Psyllid ID: psy8850

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHccccEEEEEEEEEcccccccccHHHHHHHHHHccccEEcHHHHHccccccccccccccEEcccccccccccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccEEEEEccccHHHHHHcccccHHccccccccccccccHHHHHcccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccHEHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHcccEEEEccccccccEcHHHHHHHccccEEEEEEEcEccccccEccHHHHHHHHHHcccEEEEEcccccccccccHHHHcccEEEEEHHHcccccccEEEEEcccccEEEEEEEcccccccccccccccccHEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHccccccEEEEEEEEcHHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccEEEEccc
Coil and Loop (DISEMBL)
mdysattpidprvvdkmipylrvqfgnpasrnhiygWTAEKAIEKARNEVAQLIyadpreiiwtsgatesnnLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGfrvtylkpknnglitLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGelcrskgvifhcdaaqavgkidiniqNYKVDLMSfsahkiygpkgigalyirrnprtrieaqihgggheyglrsgtlathQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYingdmnnriphnlnisfnfieGESLLMAIKDIAVssgsactsaslepsYVLRALgcndelahssirftigrfttEKEIDFTIKLLKMKVKKLRelsplwdmhkegidlNTIKWAIH
Flexible Loop (DISEMBL)
mdysattpidprvvdKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWtsgatesnnLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSsirftigrfttekEIDFTIKLLKMKVKKLRelsplwdmhkegidlntIKWAIH
Low Complexity Region (SEG)
MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH
Disordered region (IsUnstruct)
***********RVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAI*
Disordered Region (DISOPRED)
MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKW***
Disordered Region (DISEMBL)
MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH
Disordered Region (DISPRO)
***SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG**CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q1H361	405	Cysteine desulfurase OS=M	yes	N/A	0.997	0.977	0.721	1e-173
Q47EN5	405	Cysteine desulfurase OS=D	yes	N/A	0.997	0.977	0.683	1e-167
Q7MNG2	404	Cysteine desulfurase OS=V	yes	N/A	0.997	0.980	0.671	1e-167
Q8DEY7	404	Cysteine desulfurase OS=V	yes	N/A	0.997	0.980	0.669	1e-167
Q60C64	403	Cysteine desulfurase OS=M	yes	N/A	0.992	0.977	0.693	1e-166
C3LT01	404	Cysteine desulfurase OS=V	yes	N/A	0.997	0.980	0.664	1e-165
Q9KTY2	404	Cysteine desulfurase OS=V	yes	N/A	0.997	0.980	0.661	1e-165
A5F3G4	404	Cysteine desulfurase OS=V	yes	N/A	0.997	0.980	0.661	1e-165
Q8ZN40	404	Cysteine desulfurase OS=S	yes	N/A	0.997	0.980	0.659	1e-164
B5BAW6	404	Cysteine desulfurase OS=S	yes	N/A	0.997	0.980	0.659	1e-164

>sp|Q1H361|ISCS_METFK Cysteine desulfurase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=iscS PE=3 SV=1

 Score =  609 bits (1570), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 287/398 (72%), Positives = 337/398 (84%), Gaps = 2/398 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +DYSATTPIDPRV +KMIPYL   FGNPASR+H +GWTAEKA+E AR EVA+L+ ADPRE
Sbjct: 9   LDYSATTPIDPRVAEKMIPYLTEHFGNPASRSHAFGWTAEKAVENAREEVARLVNADPRE 68

Query: 61  IIWTSGATESNNLAIKGAAHFYK-KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
           I+WTSGATESNNLAIKGAA+FY   +GKHI+TVQTEHK+V+D++R+LE  G+  TYL P+
Sbjct: 69  IVWTSGATESNNLAIKGAANFYSPSKGKHIVTVQTEHKAVIDTVRELERLGYEATYLIPE 128

Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
            NGLI L + +  +  DT+L SVMLVNNEIGVIQ I  IG +CR +GVIFH DAAQA GK
Sbjct: 129 PNGLIDLDKFKAALRPDTVLASVMLVNNEIGVIQDIEAIGNICREQGVIFHVDAAQATGK 188

Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH 239
           + I++Q   VDLMSFSAHK YGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTLATH
Sbjct: 189 VHIDLQKLPVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLATH 248

Query: 240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299
           QIVGMGEAFR+AR EM  E  RI  L+ RL  GL E IEE+Y+NGD+ +R+ HNLNISFN
Sbjct: 249 QIVGMGEAFRIAREEMDSENVRIRQLRDRLLKGLQE-IEEVYVNGDLEHRVAHNLNISFN 307

Query: 300 FIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359
           F+EGESL+MA+KDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRF+IGRFTTE+EI
Sbjct: 308 FVEGESLIMAVKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFSIGRFTTEEEI 367

Query: 360 DFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           D+TI+L+K K+ KLRELSPLW+MH EG+DLN + WA H
Sbjct: 368 DYTIQLMKSKIGKLRELSPLWEMHLEGVDLNAVAWATH 405

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.
Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) (taxid: 265072)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 7

>sp|Q47EN5|ISCS_DECAR Cysteine desulfurase OS=Dechloromonas aromatica (strain RCB) GN=iscS PE=3 SV=1

 Score =  588 bits (1517), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 272/398 (68%), Positives = 331/398 (83%), Gaps = 2/398 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +DYSATTP+DPRV +KMIPYL   FGNPASR+H +GW A+ A+E+AR +VA L+ ADP+E
Sbjct: 9   LDYSATTPVDPRVAEKMIPYLCEHFGNPASRSHSFGWVADAAVEEAREQVAALVNADPKE 68

Query: 61  IIWTSGATESNNLAIKGAAHFYKK-RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
           I+WTSGATESNNLAIKGAA+FY   +GKHIITV+TEHK++LD++R++E  GF  TYL  K
Sbjct: 69  IVWTSGATESNNLAIKGAANFYASTKGKHIITVKTEHKAILDTVREMERQGFEATYLDVK 128

Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
            +GL+ L   +  I  DT+L SVM VNNE+GVIQPI E+GE+CR KG+IFH DAAQA GK
Sbjct: 129 EDGLLDLEVFKAAIRPDTVLASVMFVNNEVGVIQPIAELGEICREKGIIFHVDAAQATGK 188

Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH 239
           +DI++   KVDLMSF AHK YGPKGIGALY+RR PR R+EAQ+HGGGHE G RSGTL TH
Sbjct: 189 VDIDLSKLKVDLMSFCAHKTYGPKGIGALYVRRKPRIRLEAQMHGGGHERGFRSGTLPTH 248

Query: 240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299
           QIVGMGE FRLA+ EM EE KR+  L+ +L  GL + IE  ++NGD+  R+ HNLNISF 
Sbjct: 249 QIVGMGECFRLAKEEMAEENKRVGALRDKLLKGL-QDIEATFVNGDLTQRVAHNLNISFA 307

Query: 300 FIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359
           ++EGES++MAIKD+AVSSGSACTSASLEPSYVLRALG +DELAHSSIRF+IGRFTTE+EI
Sbjct: 308 YVEGESMIMAIKDLAVSSGSACTSASLEPSYVLRALGRDDELAHSSIRFSIGRFTTEEEI 367

Query: 360 DFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           D+ IKLL  KV KLRELSPLW+M+K+GIDL+T++WA H
Sbjct: 368 DYAIKLLHQKVGKLRELSPLWEMYKDGIDLSTVQWAAH 405

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Dechloromonas aromatica (strain RCB) (taxid: 159087)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q7MNG2|ISCS_VIBVY Cysteine desulfurase OS=Vibrio vulnificus (strain YJ016) GN=iscS PE=3 SV=1

 Score =  587 bits (1514), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 268/399 (67%), Positives = 343/399 (85%), Gaps = 3/399 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSAT P+DPRV +KM+ Y+ +   FGNPASR+H YGW AE+A++ AR ++A+L+ ADP
Sbjct: 7   LDYSATCPVDPRVAEKMVQYMTMDGTFGNPASRSHRYGWQAEEAVDTAREQIAELLNADP 66

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKGAAHFY K+GKH+IT +TEHK+VLD+ R+LE +GF VTYL+P
Sbjct: 67  REIVFTSGATESDNLAIKGAAHFYSKQGKHVITSKTEHKAVLDTCRQLEREGFEVTYLEP 126

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           ++NGLI+LS+LE  +  DT+LVS+M VNNEIGVIQ I  IGELCRS+ +IFH DAAQ+ G
Sbjct: 127 ESNGLISLSKLEAAMRDDTVLVSIMHVNNEIGVIQDIEAIGELCRSRKIIFHVDAAQSAG 186

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++Q  KVDL+S SAHKIYGPKGIGALY+RR PR R+EAQ+HGGGHE G RSGTL T
Sbjct: 187 KVAIDVQKLKVDLISLSAHKIYGPKGIGALYVRRKPRIRLEAQMHGGGHERGFRSGTLPT 246

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEAFR+A+++M+++ +  L L+ RL +G+ + +E + INGD++ R+PHNLNISF
Sbjct: 247 HQIVGMGEAFRIAKLDMEKDYQHALALRNRLLDGV-KDMEAVTINGDLDQRVPHNLNISF 305

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
            F+EGESLLM++KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF+ GRFTTE+E
Sbjct: 306 AFVEGESLLMSLKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSFGRFTTEEE 365

Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+ I+ +++ V KLR++SPLWDM+KEGIDLNT++WA H
Sbjct: 366 IDYAIEQIRVAVAKLRDMSPLWDMYKEGIDLNTVEWAHH 404

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q8DEY7|ISCS_VIBVU Cysteine desulfurase OS=Vibrio vulnificus (strain CMCP6) GN=iscS PE=3 SV=1

 Score =  587 bits (1512), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 267/399 (66%), Positives = 344/399 (86%), Gaps = 3/399 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSAT P+DPRV +KM+ Y+ +   FGNPASR+H YGW AE+A++ AR ++A+L+ ADP
Sbjct: 7   LDYSATCPVDPRVAEKMVQYMTMDGTFGNPASRSHRYGWQAEEAVDTAREQIAELLNADP 66

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKGAAHFY K+GKH+IT +TEHK+VLD+ R+LE +GF VTYL+P
Sbjct: 67  REIVFTSGATESDNLAIKGAAHFYSKQGKHVITSKTEHKAVLDTCRQLEREGFEVTYLEP 126

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           ++NGLI+LS+LE  +  DT+LVS+M VNNEIGVIQ I  IGELCRS+ +IFH DAAQ+ G
Sbjct: 127 ESNGLISLSKLEAAMRDDTVLVSIMHVNNEIGVIQDIEAIGELCRSRKIIFHVDAAQSAG 186

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++Q  KVDL+S SAHKIYGPKGIGALY+RR PR R+EAQ+HGGGHE G RSGTL T
Sbjct: 187 KVAIDVQKLKVDLISLSAHKIYGPKGIGALYVRRKPRIRLEAQMHGGGHERGFRSGTLPT 246

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEAFR+A+++M+++ +  L L+ RL +G+ + +E + INGD++ R+PHNLNISF
Sbjct: 247 HQIVGMGEAFRIAKLDMEKDYQHALALRNRLLDGV-KDMEAVTINGDLDQRVPHNLNISF 305

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
            F+EGESLLM++KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF+ GRFTTE+E
Sbjct: 306 AFVEGESLLMSLKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSFGRFTTEEE 365

Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+ I+ +++ V+KLR++SPLWDM+K+GIDLNT++WA H
Sbjct: 366 IDYAIEQIRVAVEKLRDMSPLWDMYKDGIDLNTVEWAHH 404

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Vibrio vulnificus (taxid: 672)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q60C64|ISCS_METCA Cysteine desulfurase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=iscS PE=3 SV=1

 Score =  586 bits (1510), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 274/395 (69%), Positives = 336/395 (85%), Gaps = 1/395 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +DYSATTP+DPRV +KMIP+L   FGNPASR+H +GWTAE+A+E AR EVA+L+ ADPRE
Sbjct: 7   LDYSATTPVDPRVAEKMIPFLTENFGNPASRSHTFGWTAEQAVENAREEVAKLVNADPRE 66

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           I+WTSGATES+NLAIKGAA FY+ +G+H+ITV+TEHK+VLD++R+LE+ GF VTYL+P  
Sbjct: 67  IVWTSGATESDNLAIKGAAEFYQTKGRHLITVKTEHKAVLDTMRELESSGFEVTYLEPMA 126

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGL+ L      I  DT+L SVM VNNEIGVIQ I  IG +CR  GVIFH DAAQA GK+
Sbjct: 127 NGLLDLDAFRAAIRPDTVLASVMQVNNEIGVIQDIAAIGGICREHGVIFHVDAAQATGKV 186

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
           +I+++   VDLMSFSAHK YGPKGIGALY+RR PR R++AQ+HGGGHE GLRSGTLATHQ
Sbjct: 187 EIDLEQLPVDLMSFSAHKTYGPKGIGALYVRRKPRIRLKAQMHGGGHERGLRSGTLATHQ 246

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMGEAFR+AR EM  E +RI  L+ RL  GL + +EE++INGD+  R+PHNLNISFN+
Sbjct: 247 IVGMGEAFRIAREEMAAENERIRRLRDRLLAGLAD-MEEVFINGDLEQRVPHNLNISFNY 305

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MAIKD+AVSSGSACTSASLEPSYVLRALG +DELAHSSIRFT+GR+TT +++D
Sbjct: 306 VEGESLMMAIKDLAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTLGRYTTAEDVD 365

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWA 395
           F I L+K KV +LRE+SPLW+M+K+GIDLNT++WA
Sbjct: 366 FAISLIKDKVARLREISPLWEMYKDGIDLNTVQWA 400

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|C3LT01|ISCS_VIBCM Cysteine desulfurase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=iscS PE=3 SV=1

 Score =  581 bits (1498), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 265/399 (66%), Positives = 336/399 (84%), Gaps = 3/399 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSAT P+DPRV +KM+ Y+ +   FGNPASR+H YGW AE+A++ AR ++A L+ ADP
Sbjct: 7   LDYSATCPVDPRVAEKMVQYMTMDGTFGNPASRSHRYGWQAEEAVDTAREQIAALLNADP 66

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKG AHFY K+GKHIIT +TEHK+VLD++R+LE +GF VTYL P
Sbjct: 67  REIVFTSGATESDNLAIKGVAHFYNKQGKHIITSKTEHKAVLDTMRQLEREGFEVTYLDP 126

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           ++NGLI L++LE  +  DTILVS+M VNNEIGV+Q I  IGELCRS+ V+FH DAAQ+ G
Sbjct: 127 ESNGLIDLAKLEAAMRDDTILVSIMHVNNEIGVVQDIAAIGELCRSRKVVFHVDAAQSAG 186

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++Q  KVDL+S SAHK YGPKGIGALY+RR PR R+EAQ+HGGGHE G RSGTL T
Sbjct: 187 KVAIDVQEMKVDLISLSAHKAYGPKGIGALYVRRKPRIRLEAQMHGGGHERGFRSGTLPT 246

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEAFR+A+ E++++    L L+ RL +G+ + +E + INGD++ R+PHNLN+SF
Sbjct: 247 HQIVGMGEAFRIAKEELQQDYDHALKLRNRLLDGI-KDMEAVTINGDLDQRVPHNLNVSF 305

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
            F+EGESLLMA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF+ GRFTTE E
Sbjct: 306 AFVEGESLLMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSFGRFTTEAE 365

Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+ I+L+++ V KLR +SPLWDM+K+G+DLNT++WA H
Sbjct: 366 IDYAIELIRVAVDKLRAMSPLWDMYKDGVDLNTVEWAHH 404

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9KTY2|ISCS_VIBCH Cysteine desulfurase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=iscS PE=3 SV=1

 Score =  581 bits (1497), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 264/399 (66%), Positives = 336/399 (84%), Gaps = 3/399 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSAT P+DPRV +KM+ Y+ +   FGNPASR+H YGW AE+A++ AR ++A L+ ADP
Sbjct: 7   LDYSATCPVDPRVAEKMVQYMTMDGTFGNPASRSHRYGWQAEEAVDTAREQIAALLNADP 66

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKG AHFY K+GKHIIT +TEHK+VLD++R+LE +GF VTYL P
Sbjct: 67  REIVFTSGATESDNLAIKGVAHFYNKQGKHIITSKTEHKAVLDTMRQLEREGFEVTYLDP 126

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           ++NGL+ L++LE  +  DTILVS+M VNNEIGV+Q I  IGELCRS+ V+FH DAAQ+ G
Sbjct: 127 ESNGLVDLAKLEAAMRDDTILVSIMHVNNEIGVVQDIAAIGELCRSRKVVFHVDAAQSAG 186

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++Q  KVDL+S SAHK YGPKGIGALY+RR PR R+EAQ+HGGGHE G RSGTL T
Sbjct: 187 KVAIDVQEMKVDLISLSAHKAYGPKGIGALYVRRKPRIRLEAQMHGGGHERGFRSGTLPT 246

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEAFR+A+ E++++    L L+ RL +G+ + +E + INGD++ R+PHNLN+SF
Sbjct: 247 HQIVGMGEAFRIAKEELQQDYDHALKLRNRLLDGI-KDMEAVTINGDLDQRVPHNLNVSF 305

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
            F+EGESLLMA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF+ GRFTTE E
Sbjct: 306 AFVEGESLLMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSFGRFTTEAE 365

Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+ I+L+++ V KLR +SPLWDM+K+G+DLNT++WA H
Sbjct: 366 IDYAIELIRVAVDKLRAMSPLWDMYKDGVDLNTVEWAHH 404

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|A5F3G4|ISCS_VIBC3 Cysteine desulfurase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=iscS PE=3 SV=1

 Score =  581 bits (1497), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 264/399 (66%), Positives = 336/399 (84%), Gaps = 3/399 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSAT P+DPRV +KM+ Y+ +   FGNPASR+H YGW AE+A++ AR ++A L+ ADP
Sbjct: 7   LDYSATCPVDPRVAEKMVQYMTMDGTFGNPASRSHRYGWQAEEAVDTAREQIAALLNADP 66

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKG AHFY K+GKHIIT +TEHK+VLD++R+LE +GF VTYL P
Sbjct: 67  REIVFTSGATESDNLAIKGVAHFYNKQGKHIITSKTEHKAVLDTMRQLEREGFEVTYLDP 126

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           ++NGL+ L++LE  +  DTILVS+M VNNEIGV+Q I  IGELCRS+ V+FH DAAQ+ G
Sbjct: 127 ESNGLVDLAKLEAAMRDDTILVSIMHVNNEIGVVQDIAAIGELCRSRKVVFHVDAAQSAG 186

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++Q  KVDL+S SAHK YGPKGIGALY+RR PR R+EAQ+HGGGHE G RSGTL T
Sbjct: 187 KVAIDVQEMKVDLISLSAHKAYGPKGIGALYVRRKPRIRLEAQMHGGGHERGFRSGTLPT 246

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEAFR+A+ E++++    L L+ RL +G+ + +E + INGD++ R+PHNLN+SF
Sbjct: 247 HQIVGMGEAFRIAKEELQQDYDHALKLRNRLLDGI-KDMEAVTINGDLDQRVPHNLNVSF 305

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
            F+EGESLLMA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF+ GRFTTE E
Sbjct: 306 AFVEGESLLMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSFGRFTTEAE 365

Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+ I+L+++ V KLR +SPLWDM+K+G+DLNT++WA H
Sbjct: 366 IDYAIELIRVAVDKLRAMSPLWDMYKDGVDLNTVEWAHH 404

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q8ZN40|ISCS_SALTY Cysteine desulfurase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=iscS PE=3 SV=1

 Score =  576 bits (1485), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 263/399 (65%), Positives = 343/399 (85%), Gaps = 3/399 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSATTP+DPRV +KM+ +L +   FGNPASR+H +GW AE+A++ ARN++A+L+ ADP
Sbjct: 7   LDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFGWQAEEAVDIARNQIAELVGADP 66

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 67  REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 126

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           + NG+I L++LE  +  DTILVS+M VNNEIGV+Q I  IGE+CR++G+I+H DA Q+VG
Sbjct: 127 QRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVG 186

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++   KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL  
Sbjct: 187 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRIRIEAQMHGGGHERGMRSGTLPV 246

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEA+R+A+ EM+ E+ R+  L+ RL+NG+ + IEE+Y+NGD+    P+ LN+SF
Sbjct: 247 HQIVGMGEAYRIAKEEMETEMARLRGLRNRLWNGI-KDIEEVYLNGDLEQGAPNILNVSF 305

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 306 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGMNDELAHSSIRFSLGRFTTEEE 365

Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+TI L++  + +LR+LSPLW+M+K+G+DLN+I+WA H
Sbjct: 366 IDYTIDLVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 404

Catalyzes the removal of elemental sulfur and selenium atoms from cysteine and selenocysteine to produce alanine. Functions as a sulfur delivery protein for NAD, biotin and Fe-S cluster synthesis. Transfers sulfur on 'Cys-456' of ThiI in a transpersulfidation reaction. Functions also as a selenium delivery protein in the pathway for the biosynthesis of selenophosphate.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|B5BAW6|ISCS_SALPK Cysteine desulfurase OS=Salmonella paratyphi A (strain AKU_12601) GN=iscS PE=3 SV=1

 Score =  576 bits (1485), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 263/399 (65%), Positives = 343/399 (85%), Gaps = 3/399 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSATTP+DPRV +KM+ +L +   FGNPASR+H +GW AE+A++ ARN++A+L+ ADP
Sbjct: 7   LDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFGWQAEEAVDIARNQIAELVGADP 66

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 67  REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 126

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           + NG+I L++LE  +  DTILVS+M VNNEIGV+Q I  IGE+CR++G+I+H DA Q+VG
Sbjct: 127 QRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVG 186

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++   KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL  
Sbjct: 187 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRIRIEAQMHGGGHERGMRSGTLPV 246

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEA+R+A+ EM+ E+ R+  L+ RL+NG+ + IEE+Y+NGD+    P+ LN+SF
Sbjct: 247 HQIVGMGEAYRIAKEEMETEMARLRGLRNRLWNGI-KDIEEVYLNGDLEQGAPNILNVSF 305

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 306 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGMNDELAHSSIRFSLGRFTTEEE 365

Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+TI L++  + +LR+LSPLW+M+K+G+DLN+I+WA H
Sbjct: 366 IDYTIDLVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 404

Catalyzes the removal of elemental sulfur and selenium atoms from cysteine and selenocysteine to produce alanine. Functions as a sulfur delivery protein for NAD, biotin and Fe-S cluster synthesis. Transfers sulfur on 'Cys-456' of ThiI in a transpersulfidation reaction. Functions also as a selenium delivery protein in the pathway for the biosynthesis of selenophosphate.

Salmonella paratyphi A (strain AKU_12601) (taxid: 554290)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
134095420	417	tRNA 4-thiouridine sulfurtransferase [He	0.997	0.949	0.773	0.0
152980888	417	cysteine desulfurase [Janthinobacterium	0.997	0.949	0.773	0.0
300312444	417	cysteine desulfurase [Herbaspirillum ser	0.997	0.949	0.775	0.0
398834079	417	cysteine desulfurase IscS [Herbaspirillu	0.997	0.949	0.763	0.0
409406872	417	cysteine desulfurase [Herbaspirillum sp.	0.997	0.949	0.773	0.0
399019488	417	cysteine desulfurase IscS [Herbaspirillu	0.997	0.949	0.768	0.0
329904111	417	Cysteine desulfurase [Oxalobacteraceae b	0.997	0.949	0.758	0.0
415916354	417	Cysteine desulfurase [Herbaspirillum fri	0.997	0.949	0.768	0.0
340788313	413	cysteine desulfurase [Collimonas fungivo	0.997	0.958	0.758	0.0
427401511	418	cysteine desulfurase [Massilia timonae C	0.997	0.947	0.750	0.0

>gi|134095420|ref|YP_001100495.1| tRNA 4-thiouridine sulfurtransferase [Herminiimonas arsenicoxydans] gi|133739323|emb|CAL62373.1| Cysteine desulfurase [Herminiimonas arsenicoxydans]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/397 (77%), Positives = 357/397 (89%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDYSATTPIDPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E AR +VA+L+ ADPRE
Sbjct: 22  MDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDAREQVAKLVNADPRE 81

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           IIWTSGATE NNLA+KGAA FYK +GKHIITV+TEHK+VLD++R+LE  GF  TYL+P++
Sbjct: 82  IIWTSGATEGNNLALKGAAQFYKTKGKHIITVKTEHKAVLDTVRELERQGFEATYLQPQD 141

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGLIT+ QL E I  DTILVSVMLVNNEIGVIQPI EIGELCRSKG+IFHCDAAQA GK+
Sbjct: 142 NGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIGELCRSKGIIFHCDAAQATGKV 201

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++  KVDLM+F+AHK YGPKGIGALY+RR PR RIEAQ+HGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRKPRIRIEAQMHGGGHERGLRSGTLATHQ 261

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMGEAFR+AR EM EE+ RI  L+ RL  GLM+ +EE+YINGDM++R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRIAREEMDEEIVRITALRDRLAKGLMD-MEEVYINGDMDHRVPHNLNVSFNY 320

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MAIKD+AVSSGSACTSASLEPSYVLRALG +DELAHSSIRFT GRFTTE+++D
Sbjct: 321 VEGESLIMAIKDLAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTFGRFTTEEDVD 380

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           FTIKL+K KV KLRELSPLWDM+K+GID++TI+WA H
Sbjct: 381 FTIKLIKEKVAKLRELSPLWDMYKDGIDISTIQWAAH 417

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152980888|ref|YP_001352942.1| cysteine desulfurase [Janthinobacterium sp. Marseille] gi|151280965|gb|ABR89375.1| cysteine desulfurase [Janthinobacterium sp. Marseille]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/397 (77%), Positives = 356/397 (89%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDYSATTPIDPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E AR +VA L+ ADPRE
Sbjct: 22  MDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDAREQVAALVNADPRE 81

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           IIWTSGATE NNLA+KGAA FYK +GKHIITV+TEHK+VLD++R+LE  GF  TYL+P++
Sbjct: 82  IIWTSGATEGNNLALKGAAQFYKTKGKHIITVKTEHKAVLDTVRELERQGFEATYLQPQD 141

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGLIT+ QL E I  DTILVSVMLVNNEIGVIQPI EIGELCRSKG+IFHCDAAQA GK+
Sbjct: 142 NGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIGELCRSKGIIFHCDAAQATGKV 201

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++  KVDLM+F+AHK YGPKGIGALY+RR PR RIEAQ+HGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGLRSGTLATHQ 261

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMGEAFR+AR EM EE+ RI  L+ RL  GLM+ +EE+YINGDM++R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRIAREEMDEEIVRIKGLRDRLAKGLMD-MEEVYINGDMDHRVPHNLNVSFNY 320

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MAIKD+AVSSGSACTSASLEPSYVLRALG +DELAHSSIRFT GRFTTE+++D
Sbjct: 321 VEGESLIMAIKDLAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTFGRFTTEEDVD 380

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           FTIKL+K KV KLRELSPLWDM+K+GID++TI+WA H
Sbjct: 381 FTIKLIKEKVNKLRELSPLWDMYKDGIDISTIQWAAH 417

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300312444|ref|YP_003776536.1| cysteine desulfurase [Herbaspirillum seropedicae SmR1] gi|300075229|gb|ADJ64628.1| cysteine desulfurase protein [Herbaspirillum seropedicae SmR1]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/397 (77%), Positives = 352/397 (88%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDYSATTP+DPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E+AR EVA+L+ AD RE
Sbjct: 22  MDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEEAREEVAKLVNADSRE 81

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           IIWTSGATESNNLAIKGAA FYK +GKHIITV+TEHK+VLD+ R+LE  GF  TYL+P++
Sbjct: 82  IIWTSGATESNNLAIKGAAQFYKSKGKHIITVKTEHKAVLDTFRELERIGFEATYLQPQD 141

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGL+T+ Q+   +  DTILVSVMLVNNEIGVIQP+ EIGE CRSKG+IFH DAAQA GK+
Sbjct: 142 NGLVTVEQIAAAVRPDTILVSVMLVNNEIGVIQPVPEIGEFCRSKGIIFHSDAAQATGKV 201

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++N+KVDLMSFSAHK YGPKGIGALY+RR PR RIEAQ+HGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLENWKVDLMSFSAHKSYGPKGIGALYVRRKPRVRIEAQMHGGGHERGLRSGTLATHQ 261

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMGEAFRLAR EM  EL RI  L+ RL  GL E IEE YINGDM +R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRLAREEMDSELARIRALRDRLAKGLQE-IEETYINGDMEHRVPHNLNVSFNY 320

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 380

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           FTI L+K KV KLRELSPLWDM+K+G+DL+TI+WA H
Sbjct: 381 FTIALIKSKVGKLRELSPLWDMYKDGVDLSTIQWAAH 417

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398834079|ref|ZP_10592027.1| cysteine desulfurase IscS [Herbaspirillum sp. YR522] gi|398220600|gb|EJN07044.1| cysteine desulfurase IscS [Herbaspirillum sp. YR522]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/397 (76%), Positives = 355/397 (89%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDYSATTP+DPRV DKMIPYLR QFGNPASR+H+YGW+AEKA+E+AR EVA+L+ AD RE
Sbjct: 22  MDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWSAEKAVEEAREEVARLVNADSRE 81

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           IIWTSGATESNNLAIKGAA FYK +G+HIITV+TEHK+VLD+ R+LE  GF  TYL+P++
Sbjct: 82  IIWTSGATESNNLAIKGAAQFYKTKGRHIITVKTEHKAVLDTFRELERQGFEATYLQPQD 141

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGL+++  + + + +DTILVSVMLVNNEIGVIQP+ EIGE CRSKG+IFHCDAAQA GK+
Sbjct: 142 NGLVSVDDIAKAVRADTILVSVMLVNNEIGVIQPVAEIGEFCRSKGIIFHCDAAQATGKV 201

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++ +K+DLMSFSAHK YGPKGIGALY+RR PR RIEAQIHGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLEQWKIDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQIHGGGHERGLRSGTLATHQ 261

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMGEAFRLAR EM+ EL+ I  L+ RL  GL + IEE YINGDM++R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRLAREEMESELQHIRTLRDRLARGL-QQIEETYINGDMDHRVPHNLNVSFNY 320

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 380

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           FTI L+K KV KLRELSPLWDM+K+G+DL+TIKWA H
Sbjct: 381 FTIDLIKSKVGKLRELSPLWDMYKDGVDLSTIKWAAH 417

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|409406872|ref|ZP_11255334.1| cysteine desulfurase [Herbaspirillum sp. GW103] gi|386435421|gb|EIJ48246.1| cysteine desulfurase [Herbaspirillum sp. GW103]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/397 (77%), Positives = 353/397 (88%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDYSATTP+DPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E+AR EVA+L+ AD RE
Sbjct: 22  MDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEEAREEVAKLVNADSRE 81

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           IIWTSGATESNNLAIKGAA FYK +GKHIITV+TEHK+VLD+ R+LE  GF  TYL+P++
Sbjct: 82  IIWTSGATESNNLAIKGAAQFYKSKGKHIITVKTEHKAVLDTFRELERVGFEATYLQPQD 141

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGL+T+ Q+   +  DTILVSVMLVNNEIGVIQP+ EIGE CRSKG+IFH DAAQA GK+
Sbjct: 142 NGLVTVEQIAAAVRPDTILVSVMLVNNEIGVIQPVPEIGEFCRSKGIIFHSDAAQATGKV 201

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++N+KVDLMSFSAHK YGPKGIGALY+RR PR RIEAQ+HGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLENWKVDLMSFSAHKSYGPKGIGALYVRRKPRVRIEAQMHGGGHERGLRSGTLATHQ 261

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMGEAFRLAR EM  EL  I  L+ RL  GL E IEE YINGDM++R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRLAREEMDTELAHIRALRDRLAKGLQE-IEETYINGDMDHRVPHNLNVSFNY 320

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 380

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           FTI+L+K KV KLRELSPLWDM+K+G+DL+TI+WA H
Sbjct: 381 FTIELIKSKVGKLRELSPLWDMYKDGVDLSTIQWAAH 417

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399019488|ref|ZP_10721636.1| cysteine desulfurase IscS [Herbaspirillum sp. CF444] gi|398098098|gb|EJL88391.1| cysteine desulfurase IscS [Herbaspirillum sp. CF444]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/397 (76%), Positives = 351/397 (88%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +DYSATTP+DPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E AR EVA+L+ AD RE
Sbjct: 22  LDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDAREEVAKLVNADSRE 81

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           IIWTSGATESNNLAIKGAA FYK +GKHIITV+TEHK+VLD+ R+LE  GF  TYL+P++
Sbjct: 82  IIWTSGATESNNLAIKGAAQFYKTKGKHIITVKTEHKAVLDTFRELERQGFEATYLQPQD 141

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGL+T+ Q+   +  DTIL+SVMLVNNEIGVIQP+ EIGE CRSKG+IFHCDAAQA GK+
Sbjct: 142 NGLVTVEQIAAAVRPDTILISVMLVNNEIGVIQPVPEIGEFCRSKGIIFHCDAAQATGKV 201

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++N+KVDLMSFSAHK YGPKGIGALY+RR PR RIEAQIHGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLENWKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQIHGGGHERGLRSGTLATHQ 261

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMGEAFR+AR EM  EL  I  ++ RL  GL E IEE YINGDM +R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRIAREEMDTELAHIRAMRDRLAKGLQE-IEETYINGDMEHRVPHNLNVSFNY 320

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 380

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           FTI L+K KV KLRELSPLWDM+K+GID++TI+WA H
Sbjct: 381 FTIDLIKSKVGKLRELSPLWDMYKDGIDISTIQWAAH 417

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|329904111|ref|ZP_08273677.1| Cysteine desulfurase [Oxalobacteraceae bacterium IMCC9480] gi|327548133|gb|EGF32849.1| Cysteine desulfurase [Oxalobacteraceae bacterium IMCC9480]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/397 (75%), Positives = 355/397 (89%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +DYS+TTPIDPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E+AR EVA+L+ ADPRE
Sbjct: 22  LDYSSTTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEEARAEVAKLVNADPRE 81

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           I+WTSGATESNNLAIKGAAHFYK +GKHIITV+TEHK+VLD++R+LE +GF  TYL+P++
Sbjct: 82  IVWTSGATESNNLAIKGAAHFYKTKGKHIITVKTEHKAVLDTVRELEREGFEATYLQPQD 141

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGLIT+ QL E I  DTILVSVMLVNNEIGVIQP+ EIGELCRSKG++FHCDAAQA GK+
Sbjct: 142 NGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPVDEIGELCRSKGIVFHCDAAQATGKM 201

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++  K+DLM+F+AHK YGPKGIGALY+RR PR RIE Q+HGGGHE G+RSGTL THQ
Sbjct: 202 KIDLEKTKIDLMTFTAHKSYGPKGIGALYVRRKPRIRIEPQMHGGGHERGMRSGTLPTHQ 261

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMGEAF++AR EM EE+ RI  L+ RL  GL E +EE+YINGDM +R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFKIAREEMDEEITRITALRDRLAKGLSE-MEEVYINGDMAHRVPHNLNVSFNY 320

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFT GRFTT ++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTFGRFTTNEDID 380

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           FTI L+K KV KLR+LSPLWDMHKEGID+++I+WA H
Sbjct: 381 FTINLIKEKVAKLRDLSPLWDMHKEGIDISSIQWAAH 417

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|415916354|ref|ZP_11553975.1| Cysteine desulfurase [Herbaspirillum frisingense GSF30] gi|407761523|gb|EKF70572.1| Cysteine desulfurase [Herbaspirillum frisingense GSF30]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/397 (76%), Positives = 351/397 (88%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDYSATTP+DPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E+AR EVA+L+ AD RE
Sbjct: 22  MDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEEAREEVAKLVNADSRE 81

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           IIWTSGATESNNLAIKGAA FYK +GKHIITV+TEHK+VLD+ R+LE  GF  TYL+P++
Sbjct: 82  IIWTSGATESNNLAIKGAAQFYKSKGKHIITVKTEHKAVLDTFRELERVGFEATYLQPQD 141

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGL+T+ Q+   +  DTILVSVMLVNNEIGVIQP+ EIGE CRSKG+IFH DAAQA GK+
Sbjct: 142 NGLVTVEQIAAAVRPDTILVSVMLVNNEIGVIQPVPEIGEFCRSKGIIFHSDAAQATGKV 201

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++N+KVDLMSFSAHK YGPKGIGALY+RR PR RIEAQ+HGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLENWKVDLMSFSAHKSYGPKGIGALYVRRKPRVRIEAQMHGGGHERGLRSGTLATHQ 261

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMGEAFR+AR EM  EL  I  ++ RL  GL E IEE YINGDM +R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRIAREEMDSELAHIRAMRDRLAKGLQE-IEETYINGDMEHRVPHNLNVSFNY 320

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 380

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           FTI L+K KV KLRELSPLWDM+K+G+DL+TI+WA H
Sbjct: 381 FTIDLIKSKVGKLRELSPLWDMYKDGVDLSTIQWAAH 417

Source: Herbaspirillum frisingense GSF30

Species: Herbaspirillum frisingense

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340788313|ref|YP_004753778.1| cysteine desulfurase [Collimonas fungivorans Ter331] gi|340553580|gb|AEK62955.1| Cysteine desulfurase [Collimonas fungivorans Ter331]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/397 (75%), Positives = 353/397 (88%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDYSATTPIDPRV DKMIPYLR QFGNPASR+H+YGW+AEKA+E AR +VA+L+ AD RE
Sbjct: 18  MDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWSAEKAVEDAREQVAKLVNADSRE 77

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           IIWTSGATE NNLAIKGAA+FYK +GKHIITV+TEHK+VLD +R+LE  GF  TYL+P++
Sbjct: 78  IIWTSGATEGNNLAIKGAANFYKTKGKHIITVKTEHKAVLDVVRELERQGFEATYLQPQD 137

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGLITL QLE  I  DTILVSVMLVNNEIGVIQP+ EIGELCR KG+IFHCDAAQA GK+
Sbjct: 138 NGLITLEQLEAAIRPDTILVSVMLVNNEIGVIQPVAEIGELCRQKGIIFHCDAAQATGKV 197

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++ +KVDLM+F+AHK YGPKGIGALY+RR PR R+EAQ+HGGGHE GLRSGTL THQ
Sbjct: 198 VIDLEKWKVDLMTFTAHKTYGPKGIGALYVRRKPRVRLEAQMHGGGHERGLRSGTLPTHQ 257

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMG AF +AR EM +E+ RI  L+ RL  GL ++IEE+Y+NGDM +R+PHNLN+SFN+
Sbjct: 258 IVGMGAAFEIAREEMDQEIVRIKALRDRLATGL-QTIEEVYVNGDMAHRVPHNLNVSFNY 316

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 317 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 376

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           FTI+L+K KV KLRELSPLWDM+K+GID++TI+WA H
Sbjct: 377 FTIELIKTKVAKLRELSPLWDMYKDGIDISTIQWAAH 413

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|427401511|ref|ZP_18892583.1| cysteine desulfurase [Massilia timonae CCUG 45783] gi|425719620|gb|EKU82552.1| cysteine desulfurase [Massilia timonae CCUG 45783]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/397 (75%), Positives = 351/397 (88%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +DYSATTP+DPRV D MIP+LR QFGNPASR+H YGW+AE A+E+AR  VA ++ ADPRE
Sbjct: 23  LDYSATTPVDPRVADAMIPFLREQFGNPASRSHAYGWSAEAAVEEARQNVANMVGADPRE 82

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           IIWTSGATESNNLA+KGAA FYK +GKHIITV+TEHKSVLD++R+LE  GF  TYL+P++
Sbjct: 83  IIWTSGATESNNLALKGAAQFYKTKGKHIITVKTEHKSVLDTVRELERVGFEATYLEPQD 142

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGLIT+ QLE  +  DTILVSVMLVNNEIGV+QPI E+  LCRSKG+IFHCDAAQAVGK+
Sbjct: 143 NGLITVEQLEAALRPDTILVSVMLVNNEIGVVQPIEELAALCRSKGIIFHCDAAQAVGKV 202

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++  KVDLM+F+AHK+YGPKG+GALY+RR PR R+EAQ+HGGGHE GLRSGTL THQ
Sbjct: 203 VIDLEKSKVDLMTFTAHKVYGPKGVGALYVRRKPRVRLEAQMHGGGHERGLRSGTLPTHQ 262

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           +VGMGEAFRLA+ EM+ EL RI  L+ RL  GL+E IEE+YINGDM++R+PHNLN+SFN+
Sbjct: 263 LVGMGEAFRLAKEEMEGELVRIRALRDRLAKGLLE-IEEVYINGDMDHRVPHNLNVSFNY 321

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MA+KDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE+EID
Sbjct: 322 VEGESLIMAVKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEEID 381

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           F + LLK KV KLRELSPLWDM KEGIDLN+I+WA H
Sbjct: 382 FAVDLLKSKVGKLRELSPLWDMFKEGIDLNSIQWAAH 418

Source: Massilia timonae CCUG 45783

Species: Massilia timonae

Genus: Massilia

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
UNIPROTKB|P0A6B7	404	iscS "cysteine desulfurase mon	0.997	0.980	0.656	3.1e-147
UNIPROTKB|Q9KTY2	404	iscS "Cysteine desulfurase" [V	0.997	0.980	0.661	1.3e-146
TIGR_CMR|VC_0748	404	VC_0748 "aminotransferase NifS	0.997	0.980	0.661	1.3e-146
TIGR_CMR|SO_2264	404	SO_2264 "cysteine desulfurase"	0.997	0.980	0.664	1.4e-144
UNIPROTKB|Q486Z0	404	iscS "Cysteine desulfurase" [C	0.994	0.977	0.660	3.3e-143
TIGR_CMR|CPS_1132	404	CPS_1132 "cysteine desulfurase	0.994	0.977	0.660	3.3e-143
ZFIN|ZDB-GENE-060405-1	451	nfs1 "NFS1 nitrogen fixation 1	1.0	0.880	0.614	4.5e-130
UNIPROTKB|Q9Y697	457	NFS1 "Cysteine desulfurase, mi	1.0	0.868	0.612	9.3e-130
UNIPROTKB|A5PKG4	457	NFS1 "Uncharacterized protein"	1.0	0.868	0.614	2.5e-129
UNIPROTKB|F1PAY2	457	NFS1 "Uncharacterized protein"	1.0	0.868	0.614	2.5e-129

UNIPROTKB|P0A6B7 iscS "cysteine desulfurase monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 1438 (511.3 bits), Expect = 3.1e-147, P = 3.1e-147
 Identities = 262/399 (65%), Positives = 343/399 (85%)

Query:     1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
             +DYSATTP+DPRV +KM+ ++ +   FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct:     7 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 66

Query:    59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
             REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct:    67 REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 126

Query:   119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
             + NG+I L +LE  +  DTILVS+M VNNEIGV+Q I  IGE+CR++G+I+H DA Q+VG
Sbjct:   127 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 186

Query:   179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
             K+ I++   KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL  
Sbjct:   187 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 246

Query:   239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
             HQIVGMGEA+R+A+ EM  E++R+  L+ RL+NG+ + IEE+Y+NGD+ +  P+ LN+SF
Sbjct:   247 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSF 305

Query:   299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
             N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct:   306 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 365

Query:   359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
             ID+TI+L++  + +LR+LSPLW+M+K+G+DLN+I+WA H
Sbjct:   366 IDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 404

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0097163 "sulfur carrier activity" evidence=EXP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA

GO:0031071 "cysteine desulfurase activity" evidence=IEA;IDA

GO:0009000 "selenocysteine lyase activity" evidence=IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IMP

GO:0018131 "oxazole or thiazole biosynthetic process" evidence=IMP

UNIPROTKB|Q9KTY2 iscS "Cysteine desulfurase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 1432 (509.1 bits), Expect = 1.3e-146, P = 1.3e-146
 Identities = 264/399 (66%), Positives = 336/399 (84%)

Query:     1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
             +DYSAT P+DPRV +KM+ Y+ +   FGNPASR+H YGW AE+A++ AR ++A L+ ADP
Sbjct:     7 LDYSATCPVDPRVAEKMVQYMTMDGTFGNPASRSHRYGWQAEEAVDTAREQIAALLNADP 66

Query:    59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
             REI++TSGATES+NLAIKG AHFY K+GKHIIT +TEHK+VLD++R+LE +GF VTYL P
Sbjct:    67 REIVFTSGATESDNLAIKGVAHFYNKQGKHIITSKTEHKAVLDTMRQLEREGFEVTYLDP 126

Query:   119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
             ++NGL+ L++LE  +  DTILVS+M VNNEIGV+Q I  IGELCRS+ V+FH DAAQ+ G
Sbjct:   127 ESNGLVDLAKLEAAMRDDTILVSIMHVNNEIGVVQDIAAIGELCRSRKVVFHVDAAQSAG 186

Query:   179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
             K+ I++Q  KVDL+S SAHK YGPKGIGALY+RR PR R+EAQ+HGGGHE G RSGTL T
Sbjct:   187 KVAIDVQEMKVDLISLSAHKAYGPKGIGALYVRRKPRIRLEAQMHGGGHERGFRSGTLPT 246

Query:   239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
             HQIVGMGEAFR+A+ E++++    L L+ RL +G+ + +E + INGD++ R+PHNLN+SF
Sbjct:   247 HQIVGMGEAFRIAKEELQQDYDHALKLRNRLLDGIKD-MEAVTINGDLDQRVPHNLNVSF 305

Query:   299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
              F+EGESLLMA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF+ GRFTTE E
Sbjct:   306 AFVEGESLLMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSFGRFTTEAE 365

Query:   359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
             ID+ I+L+++ V KLR +SPLWDM+K+G+DLNT++WA H
Sbjct:   366 IDYAIELIRVAVDKLRAMSPLWDMYKDGVDLNTVEWAHH 404

GO:0008150 "biological_process" evidence=ND

GO:0008483 "transaminase activity" evidence=ISS

TIGR_CMR|VC_0748 VC_0748 "aminotransferase NifS, class V" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 1432 (509.1 bits), Expect = 1.3e-146, P = 1.3e-146
 Identities = 264/399 (66%), Positives = 336/399 (84%)

Query:     1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
             +DYSAT P+DPRV +KM+ Y+ +   FGNPASR+H YGW AE+A++ AR ++A L+ ADP
Sbjct:     7 LDYSATCPVDPRVAEKMVQYMTMDGTFGNPASRSHRYGWQAEEAVDTAREQIAALLNADP 66

Query:    59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
             REI++TSGATES+NLAIKG AHFY K+GKHIIT +TEHK+VLD++R+LE +GF VTYL P
Sbjct:    67 REIVFTSGATESDNLAIKGVAHFYNKQGKHIITSKTEHKAVLDTMRQLEREGFEVTYLDP 126

Query:   119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
             ++NGL+ L++LE  +  DTILVS+M VNNEIGV+Q I  IGELCRS+ V+FH DAAQ+ G
Sbjct:   127 ESNGLVDLAKLEAAMRDDTILVSIMHVNNEIGVVQDIAAIGELCRSRKVVFHVDAAQSAG 186

Query:   179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
             K+ I++Q  KVDL+S SAHK YGPKGIGALY+RR PR R+EAQ+HGGGHE G RSGTL T
Sbjct:   187 KVAIDVQEMKVDLISLSAHKAYGPKGIGALYVRRKPRIRLEAQMHGGGHERGFRSGTLPT 246

Query:   239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
             HQIVGMGEAFR+A+ E++++    L L+ RL +G+ + +E + INGD++ R+PHNLN+SF
Sbjct:   247 HQIVGMGEAFRIAKEELQQDYDHALKLRNRLLDGIKD-MEAVTINGDLDQRVPHNLNVSF 305

Query:   299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
              F+EGESLLMA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF+ GRFTTE E
Sbjct:   306 AFVEGESLLMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSFGRFTTEAE 365

Query:   359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
             ID+ I+L+++ V KLR +SPLWDM+K+G+DLNT++WA H
Sbjct:   366 IDYAIELIRVAVDKLRAMSPLWDMYKDGVDLNTVEWAHH 404

GO:0008150 "biological_process" evidence=ND

GO:0008483 "transaminase activity" evidence=ISS

TIGR_CMR|SO_2264 SO_2264 "cysteine desulfurase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 1413 (502.5 bits), Expect = 1.4e-144, P = 1.4e-144
 Identities = 265/399 (66%), Positives = 333/399 (83%)

Query:     1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
             +DY+ATTP+DPRV +KM  Y+ +   FGNPASR+H YGW AE+A++ ARN+VA LI AD 
Sbjct:     7 LDYAATTPVDPRVAEKMFQYMTMDGIFGNPASRSHRYGWQAEEAVDVARNQVADLINADH 66

Query:    59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
             REI++TSGATESNNLAIKG AHFYKK+GKHIIT +TEHK+VLD+ R+LE +GF VTYL+P
Sbjct:    67 REIVFTSGATESNNLAIKGVAHFYKKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLEP 126

Query:   119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
             ++NG+I +++LE  +  DTILVS+M VNNEIGVI  I  IGELCRSKG+IFH DAAQ+ G
Sbjct:   127 ESNGIIPMARLEAAMRDDTILVSIMHVNNEIGVIHDIDAIGELCRSKGIIFHMDAAQSAG 186

Query:   179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
             K+ I++Q  KVDL+S S HK+YGPKGIGALY+RR PR R+EAQ+HGGGHE G+RSGTL T
Sbjct:   187 KLPIDVQATKVDLISISGHKMYGPKGIGALYVRRKPRIRLEAQMHGGGHERGMRSGTLPT 246

Query:   239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
             HQIVG+GEA  +A+ EM  +  RI  L+ +L+NG+ + IEE Y+NGDMN R   +LN+SF
Sbjct:   247 HQIVGLGEASAIAKAEMATDNVRIAKLRDKLWNGI-KHIEETYVNGDMNQRTSGSLNVSF 305

Query:   299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
             N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDE+AHSSIRF+IGRFTTE+E
Sbjct:   306 NYVEGESLMMALKDLAVSSGSACTSASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEE 365

Query:   359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
             ID  I+++   + KLRE+SPLW+M K+GIDLN ++WA H
Sbjct:   366 IDHAIEVITQSIDKLREMSPLWEMFKDGIDLNQVQWAHH 404

GO:0004123 "cystathionine gamma-lyase activity" evidence=ISS

GO:0016259 "selenocysteine metabolic process" evidence=ISS

GO:0016783 "sulfurtransferase activity" evidence=ISS

UNIPROTKB|Q486Z0 iscS "Cysteine desulfurase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
 Identities = 263/398 (66%), Positives = 333/398 (83%)

Query:     2 DYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR 59
             DYSATTP+D RV +KM+ Y+     FGNPASR+H +GW AE+A++ ARN++A+LI ADPR
Sbjct:     8 DYSATTPVDKRVAEKMMQYMTNDGHFGNPASRSHKFGWQAEEAVDIARNQIAELINADPR 67

Query:    60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
             EI++TSGATESNNLAIKGAA+FY K+GKHIIT +TEHK+VLD+ R+LE  GF VTYL P+
Sbjct:    68 EIVFTSGATESNNLAIKGAANFYNKKGKHIITCKTEHKAVLDTCRELERQGFEVTYLDPE 127

Query:   120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
              NGLI L++L + +  DTILVS+M VNNEIGVIQ I EIGE+CR++ ++FH DAAQ+ GK
Sbjct:   128 ENGLIDLNKLNDAMRDDTILVSIMQVNNEIGVIQDISEIGEMCRARKIVFHVDAAQSAGK 187

Query:   180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH 239
             I+I++Q  KVDLMS SAHK+YGPKGIGALY+ R PR R+EAQ HGGGHE G+RSGTLATH
Sbjct:   188 INIDMQALKVDLMSISAHKMYGPKGIGALYVSRKPRIRLEAQTHGGGHERGMRSGTLATH 247

Query:   240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299
             QIVGMGEA RLA+ EM ++   +  ++ RL+ GL  S+E+++INGD + R P NLN+SFN
Sbjct:   248 QIVGMGEACRLAKEEMAQDQAHVTAMRDRLWAGL-NSMEQVFINGDADKRYPGNLNVSFN 306

Query:   300 FIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359
             F+EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDE+AHSSIRF+ GRFTT +EI
Sbjct:   307 FVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDEMAHSSIRFSFGRFTTTEEI 366

Query:   360 DFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
             D+ I+L+K  +  LR++SPLW+M K+GIDL++I+WA H
Sbjct:   367 DYAIELIKGAIGHLRDMSPLWEMFKDGIDLDSIEWAAH 404

GO:0004123 "cystathionine gamma-lyase activity" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

TIGR_CMR|CPS_1132 CPS_1132 "cysteine desulfurase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
 Identities = 263/398 (66%), Positives = 333/398 (83%)

Query:     2 DYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR 59
             DYSATTP+D RV +KM+ Y+     FGNPASR+H +GW AE+A++ ARN++A+LI ADPR
Sbjct:     8 DYSATTPVDKRVAEKMMQYMTNDGHFGNPASRSHKFGWQAEEAVDIARNQIAELINADPR 67

Query:    60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
             EI++TSGATESNNLAIKGAA+FY K+GKHIIT +TEHK+VLD+ R+LE  GF VTYL P+
Sbjct:    68 EIVFTSGATESNNLAIKGAANFYNKKGKHIITCKTEHKAVLDTCRELERQGFEVTYLDPE 127

Query:   120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
              NGLI L++L + +  DTILVS+M VNNEIGVIQ I EIGE+CR++ ++FH DAAQ+ GK
Sbjct:   128 ENGLIDLNKLNDAMRDDTILVSIMQVNNEIGVIQDISEIGEMCRARKIVFHVDAAQSAGK 187

Query:   180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH 239
             I+I++Q  KVDLMS SAHK+YGPKGIGALY+ R PR R+EAQ HGGGHE G+RSGTLATH
Sbjct:   188 INIDMQALKVDLMSISAHKMYGPKGIGALYVSRKPRIRLEAQTHGGGHERGMRSGTLATH 247

Query:   240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299
             QIVGMGEA RLA+ EM ++   +  ++ RL+ GL  S+E+++INGD + R P NLN+SFN
Sbjct:   248 QIVGMGEACRLAKEEMAQDQAHVTAMRDRLWAGL-NSMEQVFINGDADKRYPGNLNVSFN 306

Query:   300 FIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359
             F+EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDE+AHSSIRF+ GRFTT +EI
Sbjct:   307 FVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDEMAHSSIRFSFGRFTTTEEI 366

Query:   360 DFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
             D+ I+L+K  +  LR++SPLW+M K+GIDL++I+WA H
Sbjct:   367 DYAIELIKGAIGHLRDMSPLWEMFKDGIDLDSIEWAAH 404

GO:0004123 "cystathionine gamma-lyase activity" evidence=ISS

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

ZFIN|ZDB-GENE-060405-1 nfs1 "NFS1 nitrogen fixation 1 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 1276 (454.2 bits), Expect = 4.5e-130, P = 4.5e-130
 Identities = 244/397 (61%), Positives = 307/397 (77%)

Query:     1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
             MD+ ATTP+DPRV+D M+PY    +GNP SR H YGW +E A+EKAR +VA LI ADPRE
Sbjct:    55 MDFQATTPMDPRVLDAMLPYQVNYYGNPHSRTHAYGWESESAMEKARKQVAGLIGADPRE 114

Query:    61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
             I++TSGATESNN++IKG A FYK +  HIIT Q EHK VLDS R LE +GF +TYL  K+
Sbjct:   115 IVFTSGATESNNMSIKGVARFYKAKKMHIITTQIEHKCVLDSCRVLETEGFDITYLPVKS 174

Query:   121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
             NGLI L QLE+ I  DT LVS+M +NNEIGV QP+ EIG LCRSK V FH DAAQAVGKI
Sbjct:   175 NGLIDLKQLEDTIRPDTSLVSIMAINNEIGVKQPVKEIGHLCRSKNVFFHTDAAQAVGKI 234

Query:   181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
              +++ ++KVDLMS SAHKIYGPKG+GAL++RR PR R+E    GGG E GLRSGT+ T  
Sbjct:   235 PVDVTDWKVDLMSISAHKIYGPKGVGALFVRRRPRVRLEPLQSGGGQERGLRSGTVPTPL 294

Query:   241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
              VG+G A  +A+ E++ + KR+  L  RL   +M  I ++ +NGD + R P  +N+SF +
Sbjct:   295 AVGLGAACEIAQQELEYDHKRVSLLANRLVQKIMSEIPDVVMNGDPDQRYPGCINLSFAY 354

Query:   301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
             +EGESLLMA+KD+A+SSGSACTSASLEPSYVLRA+G +++LAHSSIRF IGRFTTE+E+D
Sbjct:   355 VEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGADEDLAHSSIRFGIGRFTTEEEVD 414

Query:   361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
             +T +    +VK+LRE+SPLW+M +EGIDL +IKW  H
Sbjct:   415 YTAEKCIHQVKRLREMSPLWEMVQEGIDLKSIKWTQH 451

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q9Y697 NFS1 "Cysteine desulfurase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
 Identities = 243/397 (61%), Positives = 309/397 (77%)

Query:     1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
             MD  ATTP+DPRV+D M+PYL   +GNP SR H YGW +E A+E+AR +VA LI ADPRE
Sbjct:    61 MDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPRE 120

Query:    61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
             II+TSGATESNN+AIKG A FY+ R KH+IT QTEHK VLDS R LE +GF+VTYL  + 
Sbjct:   121 IIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQK 180

Query:   121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
             +G+I L +LE  I  DT LVSVM VNNEIGV QPI EIG +C S+ V FH DAAQAVGKI
Sbjct:   181 SGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKI 240

Query:   181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
              +++ + K+DLMS S HKIYGPKG+GA+YIRR PR R+EA   GGG E G+RSGT+ T  
Sbjct:   241 PLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPL 300

Query:   241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
             +VG+G A  +A+ EM+ + KRI  L +RL   +M+S+ ++ +NGD  +  P  +N+SF +
Sbjct:   301 VVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPKHHYPGCINLSFAY 360

Query:   301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
             +EGESLLMA+KD+A+SSGSACTSASLEPSYVLRA+G +++LAHSSIRF IGRFTTE+E+D
Sbjct:   361 VEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVD 420

Query:   361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
             +T++     VK+LRE+SPLW+M ++GIDL +IKW  H
Sbjct:   421 YTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0031071 "cysteine desulfurase activity" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0032324 "molybdopterin cofactor biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|A5PKG4 NFS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 244/397 (61%), Positives = 309/397 (77%)

Query:     1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
             MD  ATTP+DPRV+D M+PYL   +GNP SR H YGW +E A+E AR +VA LI ADPRE
Sbjct:    61 MDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMECARQQVASLIGADPRE 120

Query:    61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
             II+TSGATESNN+AIKG A FY+ R KH+IT QTEHK VLDS R LE +GF+VTYL  K 
Sbjct:   121 IIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFKVTYLPVKK 180

Query:   121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
             +G+I L +LE  I  DT LVSVM VNNEIGV QPI EIG++C S+ V FH DAAQAVGKI
Sbjct:   181 SGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIKEIGQICSSRKVYFHTDAAQAVGKI 240

Query:   181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
              +++ + K+DLMS S HKIYGPKG+GA+YIRR PR R+EA   GGG E G+RSGT+ T  
Sbjct:   241 PLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPL 300

Query:   241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
             +VG+G A  +A+ EM+ + KRI  L +RL   +M+S+ ++ +NGD  +  P  +N+SF +
Sbjct:   301 VVGLGAACEVAQQEMEYDHKRISKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAY 360

Query:   301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
             +EGESLLMA+KD+A+SSGSACTSASLEPSYVLRA+G +++LAHSSIRF IGRFTTE+E+D
Sbjct:   361 VEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVD 420

Query:   361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
             +T++     VK+LRE+SPLW+M ++GIDL +IKW  H
Sbjct:   421 YTVEKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

UNIPROTKB|F1PAY2 NFS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
 Identities = 244/397 (61%), Positives = 308/397 (77%)

Query:     1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
             MD  ATTP+DPRV+D M+PYL   +GNP SR H YGW +E A+E AR +VA LI ADPRE
Sbjct:    61 MDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPRE 120

Query:    61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
             II+TSGATESNN+AIKG A FY+ R KH+IT QTEHK VLDS R LE +GF+VTYL  K 
Sbjct:   121 IIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVKK 180

Query:   121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
             +G+I L +LE  I  DT LVSVM VNNEIGV QPI EIG++C S+ V FH DAAQAVGKI
Sbjct:   181 SGIIDLKELESAIQPDTSLVSVMTVNNEIGVKQPIAEIGQICSSRKVYFHTDAAQAVGKI 240

Query:   181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
              +++ + K+DLMS S HKIYGPKG+GA+YIRR PR R+EA   GGG E G+RSGT+ T  
Sbjct:   241 PLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPL 300

Query:   241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
             +VG+G A  +A+ EM+ + KRI  L  RL   +M+S+ ++ +NGD  +  P  +N+SF +
Sbjct:   301 VVGLGAACEVAQQEMEYDHKRISKLADRLTQKIMKSLPDVVMNGDPEHHYPGCINLSFAY 360

Query:   301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
             +EGESLLMA+KD+A+SSGSACTSASLEPSYVLRA+G +++LAHSSIRF IGRFTTE+E+D
Sbjct:   361 VEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVD 420

Query:   361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
             +T++     VK+LRE+SPLW+M ++GIDL +IKW  H
Sbjct:   421 YTVEKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1H361	ISCS_METFK	2, ., 8, ., 1, ., 7	0.7211	0.9974	0.9777	yes	N/A
B7MIM0	ISCS_ECO45	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
B5R5A2	ISCS_SALEP	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
Q02RW8	ISCS_PSEAB	2, ., 8, ., 1, ., 7	0.6691	0.9974	0.9801	yes	N/A
C3LT01	ISCS_VIBCM	2, ., 8, ., 1, ., 7	0.6641	0.9974	0.9801	yes	N/A
Q47EN5	ISCS_DECAR	2, ., 8, ., 1, ., 7	0.6834	0.9974	0.9777	yes	N/A
B5FR85	ISCS_SALDC	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
B7N6B7	ISCS_ECOLU	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
Q7MNG2	ISCS_VIBVY	2, ., 8, ., 1, ., 7	0.6716	0.9974	0.9801	yes	N/A
B6I5A2	ISCS_ECOSE	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
P0A6C0	ISCS_SHIFL	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
B4T0S2	ISCS_SALNS	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
A7ZPX4	ISCS_ECO24	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
Q9HXI8	ISCS_PSEAE	2, ., 8, ., 1, ., 7	0.6691	0.9974	0.9801	yes	N/A
Q8ZN40	ISCS_SALTY	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
B5RD12	ISCS_SALG2	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
A7MGX8	ISCS_CROS8	2, ., 8, ., 1, ., 7	0.6616	0.9974	0.9801	yes	N/A
Q57LG9	ISCS_SALCH	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
B7UGX6	ISCS_ECO27	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
B4TRX5	ISCS_SALSV	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
A5F3G4	ISCS_VIBC3	2, ., 8, ., 1, ., 7	0.6616	0.9974	0.9801	yes	N/A
B1XB05	ISCS_ECODH	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
Q8Z4N0	ISCS_SALTI	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	N/A	N/A
B1IWD1	ISCS_ECOLC	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
A6V0U8	ISCS_PSEA7	2, ., 8, ., 1, ., 7	0.6691	0.9974	0.9801	yes	N/A
Q8DEY7	ISCS_VIBVU	2, ., 8, ., 1, ., 7	0.6691	0.9974	0.9801	yes	N/A
B5BAW6	ISCS_SALPK	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
A9MHJ4	ISCS_SALAR	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	N/A	N/A
Q9KTY2	ISCS_VIBCH	2, ., 8, ., 1, ., 7	0.6616	0.9974	0.9801	yes	N/A
Q0TEV5	ISCS_ECOL5	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
Q60C64	ISCS_METCA	2, ., 8, ., 1, ., 7	0.6936	0.9924	0.9776	yes	N/A
B1LNI6	ISCS_ECOSM	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
B7MYG3	ISCS_ECO81	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
A8GHY3	ISCS_SERP5	2, ., 8, ., 1, ., 7	0.6541	0.9974	0.9801	yes	N/A
B5F1C0	ISCS_SALA4	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
B7UWH7	ISCS_PSEA8	2, ., 8, ., 1, ., 7	0.6691	0.9974	0.9801	yes	N/A
P0A6B7	ISCS_ECOLI	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	N/A	N/A
P0A6B9	ISCS_ECO57	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	N/A	N/A
B4TDB6	ISCS_SALHS	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
Q5PNG1	ISCS_SALPA	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
C4ZXA5	ISCS_ECOBW	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
B7LDC2	ISCS_ECO55	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
B7M7N3	ISCS_ECO8A	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
B2TXV5	ISCS_SHIB3	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
A9N1X5	ISCS_SALPB	2, ., 8, ., 1, ., 7	0.6591	0.9974	0.9801	yes	N/A
A8A336	ISCS_ECOHS	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
P0A6B8	ISCS_ECOL6	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
B5Z104	ISCS_ECO5E	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
B7NRH9	ISCS_ECO7I	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A
Q0T1Y9	ISCS_SHIF8	2, ., 8, ., 1, ., 7	0.6566	0.9974	0.9801	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.7	0.979
3rd Layer	2.8.1	0.983

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	397
PRK14012	404	PRK14012, PRK14012, cysteine desulfurase; Provisio	0.0
TIGR02006	402	TIGR02006, IscS, cysteine desulfurase IscS	0.0
COG1104	386	COG1104, NifS, Cysteine sulfinate desulfinase/cyst	0.0
PLN02651	364	PLN02651, PLN02651, cysteine desulfurase	0.0
TIGR03402	379	TIGR03402, FeS_nifS, cysteine desulfurase NifS	1e-169
TIGR03235	353	TIGR03235, DNA_S_dndA, cysteine desulfurase DndA	1e-139
TIGR03403	382	TIGR03403, nifS_epsilon, cysteine desulfurase, Nif	1e-114
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	2e-98
PRK02948	381	PRK02948, PRK02948, cysteine desulfurase; Provisio	9e-90
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	2e-59
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	5e-56
TIGR01977	376	TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa	1e-49
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	9e-42
TIGR03392	398	TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat	1e-21
PRK10874	401	PRK10874, PRK10874, cysteine sulfinate desulfinase	3e-21
PLN02855	424	PLN02855, PLN02855, Bifunctional selenocysteine ly	7e-21
PRK09295	406	PRK09295, PRK09295, bifunctional cysteine desulfur	5e-20
TIGR01976	397	TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa	2e-17
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-13
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	2e-11
TIGR04343	370	TIGR04343, egtE_PLP_lyase, ergothioneine biosynthe	6e-10
TIGR03301	355	TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin	2e-08
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	2e-08
TIGR03812	373	TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase	5e-08
COG0075	383	COG0075, COG0075, Serine-pyruvate aminotransferase	5e-07
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	8e-07
COG2008	342	COG2008, GLY1, Threonine aldolase [Amino acid tran	1e-06
cd06451	356	cd06451, AGAT_like, Alanine-glyoxylate aminotransf	3e-06
TIGR02539	370	TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRN	3e-04
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	5e-04
PLN02724	805	PLN02724, PLN02724, Molybdenum cofactor sulfurase	5e-04
PRK00451	447	PRK00451, PRK00451, glycine dehydrogenase subunit	0.001
COG1103	382	COG1103, COG1103, Archaea-specific pyridoxal phosp	0.004

>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional

 Score =  773 bits (1998), Expect = 0.0
 Identities = 276/399 (69%), Positives = 344/399 (86%), Gaps = 3/399 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSATTP+DPRV +KM+PYL +   FGNPASR+H +GW AE+A++ ARN++A LI ADP
Sbjct: 7   LDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADP 66

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKGAAHFY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 67  REIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDP 126

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           ++NG+I L +LE  +  DTILVS+M VNNEIGVIQ I  IGE+CR +G+IFH DAAQ+VG
Sbjct: 127 QSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVG 186

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++   KVDLMSFSAHKIYGPKGIGALY+RR PR R+EAQ+HGGGHE G+RSGTL T
Sbjct: 187 KVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPT 246

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEA R+A+ EM  E +RI  L+ RL+NG+ + IEE+Y+NGD+  R+P NLN+SF
Sbjct: 247 HQIVGMGEAARIAKEEMATENERIRALRDRLWNGI-KDIEEVYLNGDLEQRVPGNLNVSF 305

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 306 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 365

Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+ I+L++  + KLRELSPLW+M KEG+DLN+I+WA H
Sbjct: 366 IDYAIELVRKSIGKLRELSPLWEMFKEGVDLNSIEWAHH 404

Length = 404

>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS

 Score =  686 bits (1772), Expect = 0.0
 Identities = 279/397 (70%), Positives = 337/397 (84%), Gaps = 1/397 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +DY+ATTP+DPRV +KM+PYL  +FGNPASR+H +GW AE+A+E ARN+VA+LI AD RE
Sbjct: 7   LDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSRE 66

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           I++TSGATESNNLAIKG AHFYK +G HIIT +TEHK+VLD+ R LE +GF VTYL PK+
Sbjct: 67  IVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS 126

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           NGLI L +L+  I  DTILVS+M VNNEIGVIQ I  IGE+CR + V FH DAAQ+VGKI
Sbjct: 127 NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI 186

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            IN+   KVDLMS S HKIYGPKGIGALY+RR PR R+EA IHGGGHE G+RSGTL THQ
Sbjct: 187 PINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQ 246

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVGMGEAFR+A+ EM ++   +L L+ RL NG+ +SIEE+Y+NGD+ +R+P NLN+SFN+
Sbjct: 247 IVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGI-KSIEEVYLNGDLEHRVPGNLNVSFNY 305

Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
           +EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRFTIGRFTTE+EID
Sbjct: 306 VEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEID 365

Query: 361 FTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           + +KL+K  + KLRELSPLW+M KEG+DLN+I+WA H
Sbjct: 366 YAVKLVKSAIDKLRELSPLWEMFKEGVDLNSIEWAAH 402

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402

>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

 Score =  587 bits (1516), Expect = 0.0
 Identities = 224/385 (58%), Positives = 287/385 (74%), Gaps = 7/385 (1%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +D +ATTP+DP V++ M+PYL   FGNP+S  H +G  A KA+E+AR ++A+L+ ADP E
Sbjct: 5   LDNAATTPVDPEVLEAMLPYLTEVFGNPSSL-HSFGREARKAVEEAREQIAKLLGADPEE 63

Query: 61  IIWTSGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           II+TSGATESNNLAIKGAA  Y   ++GKHIIT   EH +VL++ R LE  GF VTYL  
Sbjct: 64  IIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV 123

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
            +NGL+ L QLEE +  DTILVS+M  NNE G IQPI EIGE+C+ +G++FH DA QAVG
Sbjct: 124 DSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVG 183

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           KI I+++   VDL+SFSAHK  GPKGIGALY+R  P  R+E  IHGGG E GLRSGT   
Sbjct: 184 KIPIDLEELGVDLLSFSAHKFGGPKGIGALYVR--PGVRLEPLIHGGGQERGLRSGTENV 241

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
             IVG G+A  +A  E++EE  R+  L+ RL +GL+E I ++Y+NGD   R+P+ LN SF
Sbjct: 242 PGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSF 301

Query: 299 NFIEGESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
             +EGESLL+A  +  IAVS+GSAC+S SLEPS+VLRA+G ++ELAH SIRF++GRFTTE
Sbjct: 302 PGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTE 361

Query: 357 KEIDFTIKLLKMKVKKLRELSPLWD 381
           +EID   + LK  +K+LRELSPLW 
Sbjct: 362 EEIDAAAEALKEIIKRLRELSPLWA 386

Length = 386

>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase

 Score =  553 bits (1426), Expect = 0.0
 Identities = 224/362 (61%), Positives = 273/362 (75%), Gaps = 2/362 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +D  ATTPIDPRV+D M+P+L   FGNP SR H+YGW +E A+EKAR +VA LI ADP+E
Sbjct: 3   LDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKE 62

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           II+TSGATESNNLAIKG  HFYK + KH+IT QTEHK VLDS R L+ +GF VTYL  K+
Sbjct: 63  IIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS 122

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           +GL+ L +L   I  DT LVSVM VNNEIGVIQP+ EIGELCR K V+FH DAAQAVGKI
Sbjct: 123 DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI 182

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            +++ +  VDLMS S HKIYGPKG+GALY+RR PR R+E  + GGG E G RSGT  T  
Sbjct: 183 PVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPL 242

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING--DMNNRIPHNLNISF 298
           +VG+G A  LA  EM  + K +  L++RL NGL   +  + +NG  D   R P  LN+SF
Sbjct: 243 VVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSF 302

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
            ++EGESLLM +K++AVSSGSACTSASLEPSYVLRALG  +E+AH S+R  +GRFTTE+E
Sbjct: 303 AYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEE 362

Query: 359 ID 360
           +D
Sbjct: 363 VD 364

Length = 364

>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS

 Score =  477 bits (1230), Expect = e-169
 Identities = 179/381 (46%), Positives = 252/381 (66%), Gaps = 6/381 (1%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +D +ATT +DP V++ M+PY    FGNP+S  H +G    KA+E+AR +VA+L+ A+P E
Sbjct: 3   LDNNATTRVDPEVLEAMLPYFTEYFGNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPDE 61

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           II+TSG TES+N AIK A     ++ +HIIT   EH +VL   + LE  G++VTYL    
Sbjct: 62  IIFTSGGTESDNTAIKSALAAQPEK-RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE 120

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
            G + L +L   I  DT LVSVM  NNE G I PI EIGE+ + +G +FH DA QAVGKI
Sbjct: 121 EGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI 180

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I+++   +D++S S HK++GPKG+GALYIR+   TR    + GG  E G R+GT     
Sbjct: 181 PIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKG--TRFRPLLRGGHQERGRRAGTENVPG 238

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVG+G+A  LA   ++EE  R+  L+ RL  GL+  I +  +NGD   R+P+ +NISF +
Sbjct: 239 IVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEY 298

Query: 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           IEGE++L+ +  + I  SSGSACTS SLEPS+VLRA+G     AH SIRF++ R+ TE++
Sbjct: 299 IEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEED 358

Query: 359 IDFTIKLLKMKVKKLRELSPL 379
           ID+ +++L   + +LR +SP 
Sbjct: 359 IDYVLEVLPPIIARLRAMSPF 379

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379

>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA

 Score =  399 bits (1028), Expect = e-139
 Identities = 170/353 (48%), Positives = 239/353 (67%), Gaps = 6/353 (1%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +D++ATTPIDP V + M+P+L  +FGNP+SR H +G  A+KA+E+AR +VA+ + AD  E
Sbjct: 2   LDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEE 61

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
           +I+TSGATESNNLAI G A   +++G KHIIT   EH +VL+ IR LE +GF VTYL   
Sbjct: 62  VIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD 121

Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
            +G I + +L + I  DT+LVS+M VNNE G IQPI EI E+  +    FH DAAQ VGK
Sbjct: 122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGK 181

Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRN--PRTRIEAQIHGGGHEYGLRSGTLA 237
           I +++   ++DL+S S HKIYGPKGIGAL IR+   P+  ++  + GGG E GLR GTL 
Sbjct: 182 ITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLP 241

Query: 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297
            H IVGMGEA  +AR   +    ++  ++ +L + L      + +NGD    IPH LN S
Sbjct: 242 VHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL--GVKLNGDPAETIPHILNFS 299

Query: 298 FNFIEGESLLMAIK-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 349
            + +  E+L++ ++ D AVS+GSAC+S+  EPS+VL+A+G + + A  +IRF+
Sbjct: 300 IDGVNSEALIVNLRADAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGAIRFS 352

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353

>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type

 Score =  337 bits (866), Expect = e-114
 Identities = 170/382 (44%), Positives = 238/382 (62%), Gaps = 9/382 (2%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
           +D +ATT +DP+V + M P+    +GNP S  H +G     AI +A +++ + I A D  
Sbjct: 3   LDNNATTMLDPKVKELMDPFFCDIYGNPNSL-HQFGTATHPAIAEALDKLYKGINARDLD 61

Query: 60  EIIWTSGATESNNLAIKGA--AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 117
           +II TS ATESNN  +KG       K    HIIT + EH +V  +   LE+ G  VTYL 
Sbjct: 62  DIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLP 121

Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 177
               G IT  Q+ E I   T LVSVM  NNE G+I PI EIGE+C+ +GV+FH DA QA+
Sbjct: 122 INEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAI 181

Query: 178 GKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237
           GKI +++Q   VD +SFSAHK +GPKG+G LYIR+     +    HGG H  G RSGTL 
Sbjct: 182 GKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKG--VELTPLFHGGEHMGGRRSGTLN 239

Query: 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297
              IV MGEA RLA   +  E   +  L+ RL + L+E + ++++ GD  +R+P+ + IS
Sbjct: 240 VPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILIS 298

Query: 298 FNFIEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355
              +EGE++L  +    IA S+GSAC S  LE + V+ A+G + ELAH++IR ++ RFTT
Sbjct: 299 IKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTT 358

Query: 356 EKEIDFTIKLLKMKVKKLRELS 377
           E+EID+TI++ K  V++LR +S
Sbjct: 359 EEEIDYTIEVFKKAVQRLRAIS 380

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation. Length = 382

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score =  297 bits (762), Expect = 2e-98
 Identities = 121/378 (32%), Positives = 177/378 (46%), Gaps = 32/378 (8%)

Query: 2   DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-E 60
           D +ATT     V+D +  Y     GN     H  G  A +A E+AR +VA+ I A    E
Sbjct: 4   DSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDEE 63

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPK 119
           II+TSG TE+ NL         K  G  I+  + EH + L   ++L    G  V  +   
Sbjct: 64  IIFTSGTTEAINLVAISLGRSLKP-GDEILVTEMEHHANLVPWQELAKRTGATVRVIPVD 122

Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
            NGL+ L  LE+ +   T LV++  V+N  G + P+ EIG+L    G +   DAAQAVG 
Sbjct: 123 PNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGH 182

Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-------HEYG-- 230
             I++Q   VD ++FS HK+YGP GIG LY RR+   ++   + GGG        E    
Sbjct: 183 RPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQETTFA 242

Query: 231 -----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284
                  +GT     I+G+G A   LA I ++   K    L   LY  L  +I  I + G
Sbjct: 243 DAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERL-LAIPGIRLYG 301

Query: 285 DMNNRIPHNLNISFNFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELA 342
               R P  ++ +F  +    +  L+  + IAV SG  C     +P  V   L       
Sbjct: 302 PPAERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCA----QPLMVRLGL------- 350

Query: 343 HSSIRFTIGRFTTEKEID 360
             ++R ++  + TE+E+D
Sbjct: 351 GGTLRASLYFYNTEEEVD 368

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional

 Score =  275 bits (705), Expect = 9e-90
 Identities = 136/368 (36%), Positives = 193/368 (52%), Gaps = 5/368 (1%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +DY+ATTP+    +          FGN  S  H  G TA   ++  R   A++I  + + 
Sbjct: 4   LDYAATTPMSKEALQTYQKAASQYFGN-ESSLHDIGGTASSLLQVCRKTFAEMIGGEEQG 62

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           I +TSG TESN LAI+   +   +  KHIIT   EH S+    + LE+ G+ VT +    
Sbjct: 63  IYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK 122

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           +GLI L  LE  I  DT+L S+   N+EIG IQPI EIG L +   V+FH D  Q  GK+
Sbjct: 123 SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKL 182

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
            I++    +D +S SAHKIYGPKG+GA+YI  NP+ R +    G  HE G R GT+    
Sbjct: 183 PIDVFEMGIDSLSVSAHKIYGPKGVGAVYI--NPQVRWKPVFPGTTHEKGFRPGTVNVPG 240

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           I     A       M+EE  R   L+      +      I + G   + +PH + ++   
Sbjct: 241 IAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKG 300

Query: 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           IEG+  ++    + IA+S+GSAC     EPS  + A+G   E A   +RF+ G+ TT+ +
Sbjct: 301 IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQ 360

Query: 359 IDFTIKLL 366
           ID TI  L
Sbjct: 361 IDTTIHAL 368

Length = 381

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score =  197 bits (504), Expect = 2e-59
 Identities = 113/392 (28%), Positives = 174/392 (44%), Gaps = 42/392 (10%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR- 59
           +D +AT+     V+D +  Y R    N     H     A    E AR  VA+ + AD   
Sbjct: 26  LDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSD 85

Query: 60  EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKP 118
           EI++T G TE+ NL  +G      K G  I+    EH S +   ++L    G +V  +  
Sbjct: 86  EIVFTRGTTEALNLVARGLGR-SLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPL 144

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
            ++GL+ L  LE+ I   T LV++  V+N  G + P+ EI EL    G +   DAAQA G
Sbjct: 145 DDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAG 204

Query: 179 KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH---------- 227
            + I++Q    D ++FS HK + GP GIG LY+R+     +E  + GGG           
Sbjct: 205 HLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGV 264

Query: 228 -----EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIY 281
                     +GT      +G+  A   L  I M+        L + L  GL   +  + 
Sbjct: 265 TLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGL-SELPGVE 323

Query: 282 ING-DMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSASLEPSYVLRAL 335
           I G    +R      +SFN ++G        L+  K IAV +G  C         + R L
Sbjct: 324 IYGPPDADRGG---IVSFN-VKGIHPHDVATLLDEKGIAVRAGHHCAQP------LHRLL 373

Query: 336 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
           G       ++IR ++  + TE+++D  ++ LK
Sbjct: 374 G-----VDATIRASLHLYNTEEDVDRLLEALK 400

Length = 405

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score =  188 bits (479), Expect = 5e-56
 Identities = 112/387 (28%), Positives = 171/387 (44%), Gaps = 39/387 (10%)

Query: 2   DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPRE 60
           D +AT+     V+D ++ Y R    N     H     A  A E AR +VA+ I A  P E
Sbjct: 4   DNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDE 63

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPK 119
           II+T   TE+ NL   G      K G  I+T   EH S +   ++L    G ++  +   
Sbjct: 64  IIFTRNTTEAINLVAYGLG-RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD 122

Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
           ++G + L  LE+ +   T LV+V  V+N +G I P+ EIGE+    GV    D AQ+ G 
Sbjct: 123 DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGH 182

Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--------EYGL 231
           + +++Q+   D ++FS HK+ GP GIG LY +      +     GGG         E   
Sbjct: 183 MPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMP-PYGGGGEMIEEVSFEETTY 241

Query: 232 R-------SGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
                   +GT      +G+G A   L +I M+        L       L   I  + + 
Sbjct: 242 ADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERL-SEIPGVRVY 300

Query: 284 GDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCND 339
           GD  +R      +SFN   I    +   +    IAV +G  C     +P  ++R LG   
Sbjct: 301 GDAEDRAG---VVSFNLEGIHPHDVATILDQYGIAVRAGHHCA----QP--LMRRLG--- 348

Query: 340 ELAHSSIRFTIGRFTTEKEIDFTIKLL 366
                ++R + G + TE+EID  ++ L
Sbjct: 349 --VPGTVRASFGLYNTEEEIDALVEAL 373

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein

 Score =  171 bits (435), Expect = 1e-49
 Identities = 120/404 (29%), Positives = 186/404 (46%), Gaps = 71/404 (17%)

Query: 2   DYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
           D +ATT P    V + M  + +   G+P    +     A + +E+ R  +A+L  A    
Sbjct: 4   DNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSA 63

Query: 60  EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKP 118
            +++T+ AT + N+A+KG      K G H+IT   EH SV   +  L+   G  +T +K 
Sbjct: 64  HVVFTNNATTALNIALKGLL----KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKC 119

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
            N GLI+  +++  I ++T L+ V   +N  G I PI EIGEL +  G+ F  DAAQ  G
Sbjct: 120 DNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAG 179

Query: 179 KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG------- 230
            I I++    +D+++F+ HK + GP+G G LYIR     +++    GG   +        
Sbjct: 180 VIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREG--IKLKPLKSGGTGSHSALIDQPS 237

Query: 231 -----LRSGTLATHQIVGMGEA------FRLARIEMKEELKRILFLQKRLYNGLMESIEE 279
                  SGTL T  I G+           +A I  KE +     L ++L NGL E I +
Sbjct: 238 ELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECM-----LTEKLLNGLRE-INK 291

Query: 280 IYINGDMN--NRIPHNLNISFNFIEGES------LLMAIKDIAVSSGSACTSASLEPSYV 331
           + I G  +  NR+     +SF  +EG        +L    DIA  +G  C          
Sbjct: 292 VKIYGPADPANRVG---VVSFT-VEGIDSEEVADILDEKFDIATRTGLHCAP-------- 339

Query: 332 LRALGCNDELAHSS--------IRFTIGRFTTEKEIDFTIKLLK 367
                    LAH +        IR ++G F TE+EI+  ++ L 
Sbjct: 340 ---------LAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALS 374

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score =  151 bits (383), Expect = 9e-42
 Identities = 110/393 (27%), Positives = 173/393 (44%), Gaps = 38/393 (9%)

Query: 4   SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
           SA T   P+ V+D +  Y R    N     H     A +A E  R +VA+ I A    EI
Sbjct: 24  SAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEI 83

Query: 62  IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKN 120
           ++T G TES NL          K G  I+  + EH + +   + L E  G  + ++   +
Sbjct: 84  VFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDD 143

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
           +G + L  LE+ +   T LV++  V+N +G + P+ EI +L    G     D AQAV  +
Sbjct: 144 DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHM 203

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------HE------ 228
            +++Q    D   FS HK+YGP GIG LY +     ++   + GG        E      
Sbjct: 204 PVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNE 263

Query: 229 --YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 285
             +   +GT     ++G+G A   L  I ++        L       L E I  + I G 
Sbjct: 264 APHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGLRIYGP 322

Query: 286 MNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDE 340
            +      + ISFN +EG        ++  + IAV SG  C     +P  ++R  G    
Sbjct: 323 RDAEDRGGI-ISFN-VEGVHPHDVGTILDEEGIAVRSGHHCA----QP--LMRRFG---- 370

Query: 341 LAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
              ++ R +   + TE++ID  ++ LK KV+K 
Sbjct: 371 -VPATCRASFYIYNTEEDIDALVEALK-KVRKF 401

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA

 Score = 95.3 bits (237), Expect = 1e-21
 Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 7/211 (3%)

Query: 4   SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
           SA T + P+ V+D    + R+  G      H    +     E AR +VA+ + A D   I
Sbjct: 22  SAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENI 81

Query: 62  IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKP 118
           +WT G TES NL  +  A    + G  II  + EH + L  I  L   +  G +V  L  
Sbjct: 82  VWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL--IPWLMVAQQTGAKVVKLPI 139

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
             + L  + QL E +   T ++++  ++N  G    +     L    G +   D AQ V 
Sbjct: 140 GADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVV 199

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALY 209
               ++Q   +D  +FS HK+YGP GIG LY
Sbjct: 200 HGPPDVQALDIDFYAFSGHKLYGPTGIGVLY 230

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398

>gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 7/211 (3%)

Query: 4   SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
           SA T + P+ V++    +  +  GN                E AR +VAQL+ A D + I
Sbjct: 25  SAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNI 84

Query: 62  IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKP 118
           +WT G TES NL  +  A    + G  II  + EH + L  +  L   +  G +V  L  
Sbjct: 85  VWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL--VPWLMVAQQTGAKVVKLPL 142

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
             + L  +  L E I   T ++++  ++N  G    +     L    G++   D AQ   
Sbjct: 143 GADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAV 202

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALY 209
               ++Q   +D  +FS HK+YGP GIG LY
Sbjct: 203 HFPADVQALDIDFYAFSGHKLYGPTGIGVLY 233

Length = 401

>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase

 Score = 93.3 bits (232), Expect = 7e-21
 Identities = 105/402 (26%), Positives = 173/402 (43%), Gaps = 41/402 (10%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
           +D +AT+     V+D +  Y      N     H     A  A E AR +VA  I A   R
Sbjct: 36  LDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSR 95

Query: 60  EIIWTSGATESNNLAIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYL 116
           EI++T  ATE+ NL     G A+   K G  +I    EH S +   + + +  G  + ++
Sbjct: 96  EIVFTRNATEAINLVAYTWGLANL--KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFV 153

Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
               + ++ + QL+E +   T LV+   V+N +G I P+ +I     + G     DA Q+
Sbjct: 154 GLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQS 213

Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG---------GH 227
           V  + +++Q    D +  S+HK+ GP GIG L+ + +    +   + GG           
Sbjct: 214 VPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHS 273

Query: 228 EYG-----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIY 281
            Y        +GT A  + +G+G A   L+ I M    +  + L   LY  L  S+  + 
Sbjct: 274 TYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKL-SSVPGVR 332

Query: 282 INGDMNNRIPHNLNI-SFNFIEG------ESLLMAIKDIAVSSGSACTSASLEPSYVLRA 334
           I G   +       + +FN +EG       + L     +A+ SG  C     +P +  R 
Sbjct: 333 IYGPKPSEGVGRAALCAFN-VEGIHPTDLSTFLDQQHGVAIRSGHHCA----QPLH--RY 385

Query: 335 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL 376
           LG N   A +S+ F    + T++E+D  I  LK  +      
Sbjct: 386 LGVNAS-ARASLYF----YNTKEEVDAFIHALKDTIAFFSSF 422

Length = 424

>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated

 Score = 90.6 bits (225), Expect = 5e-20
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 2/176 (1%)

Query: 39  AEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 97
           A + +E  R + A  I A    E+++  G TE  NL      +   + G +II  + EH 
Sbjct: 65  ATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHH 124

Query: 98  SVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156
           + +   + L    G  +  +    +G + L  L       T L+++  V+N +G   P+ 
Sbjct: 125 ANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLA 184

Query: 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR 212
           E+  L    G     D AQAV    +++Q    D   FS HK+YGP GIG LY++ 
Sbjct: 185 EMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240

Length = 406

>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 88/399 (22%), Positives = 154/399 (38%), Gaps = 55/399 (13%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
            D  A T I   V D +   L  +        +     A++ ++ AR  VA L+ ADP E
Sbjct: 21  FDNPAGTQIPQSVADAVSAALT-RSNANRGGAYESSRRADQVVDDAREAVADLLNADPPE 79

Query: 61  IIWTSGATESNNLAIKGAAHFYK--KRGKHIITVQTEHKSVLDS-IRKLENDG--FRVTY 115
           +++ + AT    L    +    +    G  +I  + +H++ +   ++  E  G   +   
Sbjct: 80  VVFGANATS---LTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWAR 136

Query: 116 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
           +      L     L   +   T LV+V   +N +G I  +  I EL  + G +   DA  
Sbjct: 137 VDEATGELHP-DDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVH 195

Query: 176 AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRN----------------PRTRIE 219
                 I++Q    D ++ SA+K +GP  +G L+ R                     R E
Sbjct: 196 YAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPERFE 254

Query: 220 AQIHGGGHEYGLRSGTLATHQ-IVGMGE-AFRLARIEMKEELKRILFLQKRLYNGLMESI 277
                G  +Y L +G +A    + G+GE A    R  +    + I   + RL   L+  +
Sbjct: 255 L----GTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGL 310

Query: 278 EE-----IYINGDMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSASLE 327
            +     +Y    +  R+P    +SF  + G         +A + I   +G         
Sbjct: 311 SDLPGVTLYGVARLAARVP---TVSFT-VHGLPPQRVVRRLADQGIDAWAGHFYAVR--- 363

Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366
              +LR LG NDE     +R  +  + T +E+D  ++ L
Sbjct: 364 ---LLRRLGLNDE--GGVVRVGLAHYNTAEEVDRLLEAL 397

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 12/157 (7%)

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
            ++    T +N  A+          G  +I     H S        E  G +   +   +
Sbjct: 20  AVFVPSGTGANEAAL----LALLGPGDEVIVDANGHGSRYWVAA--ELAGAKPVPVPVDD 73

Query: 121 N--GLITLSQLEEKICSDTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 177
              G + ++ LEE      + L+ +       GV+ P+ EI ++ +  G++   DAA A 
Sbjct: 74  AGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAG 133

Query: 178 GKIDIN---IQNYKVDLMSFSAHKIYGPKGIGALYIR 211
           G        I     D+++FS HK  G +G G + ++
Sbjct: 134 GASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 32/211 (15%)

Query: 64  TSGATESNNLAIKGA-AHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRV 113
           TSG TE+N LA+  A   + K+             I+  +T H S   + R L   G  +
Sbjct: 125 TSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---GLGL 181

Query: 114 TYLK-PKNNGLITLSQLEEKICSDTILVSVMLV--NNEIGVIQPILEIGELCRSKGVIFH 170
             +     +  I +  LEE I  +TI   V+      + G I  I E+ ++    G+  H
Sbjct: 182 RRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLH 241

Query: 171 CDAA---QAV------GKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEA 220
            DAA     +      G+ D  ++   VD ++   HK    P G G +   R+       
Sbjct: 242 VDAAFGGFLLPFLEPDGRWDFGLEG--VDSITVDGHKYGLAPIGCGVVLF-RDEEALRRI 298

Query: 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLA 251
            I     +Y L  G +    I+G     +  
Sbjct: 299 LIF---ADYYLPGGGIPNFTILGSRPGRQAL 326

Length = 460

>gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent enzyme EgtE

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 8/146 (5%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVI 168
           GF V  L   ++G + +      + +D   LV + +V +  G +QP   + ELCR+ GV 
Sbjct: 116 GFEVRELPVDDDGRLDVDGAASALRADPPALVHLTVVGSHRGTVQPAAAVAELCRAAGVP 175

Query: 169 FHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH 227
              DAAQA+G +D        D    S+ K + GP+G+G L +R     R+  ++     
Sbjct: 176 LVVDAAQALGHLDC---AVGADAYYSSSRKWLAGPRGVGVLAVRPELLERLAPRLPPPDW 232

Query: 228 EYGLRSGTLATHQIVGMGEAFRLARI 253
                +  LA  Q +  GEA   AR+
Sbjct: 233 P---EASPLAVAQRLEHGEANIAARV 255

Members of this protein family are the pyridoxal phosphate-dependent enzyme EgtE, which catalyzes the final step in the biosynthesis of ergothioneine [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 370

>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)

Query: 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHC 171
           T L         L+++EE + +D  +  V  V++E   G++ P+  I ++ RS G +   
Sbjct: 101 TDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIV 160

Query: 172 DAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 212
           DA  + G I I+I+   VD +  SA+K + G  G G +  RR
Sbjct: 161 DAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARR 202

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 48/183 (26%), Positives = 68/183 (37%), Gaps = 46/183 (25%)

Query: 62  IWTSGATESNNLAIKGAAHFYKKRGKH----------IITVQTEHKSV-------LDSIR 104
           ++TSG +ESN LA+  A    +KR K           I+     H SV          +R
Sbjct: 61  VFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVR 120

Query: 105 KLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEI 158
            +  D           +G +    LE  I  D       I+V       + G I P+ EI
Sbjct: 121 LVPVDE----------DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170

Query: 159 GELCRSKGVIFHCDAAQAVGKI--------DINIQNYKVDLMSFSAHKIYG--PKGIGAL 208
            +L     +  H DAA     +        D  I+   VD +S   HK YG  P G  A+
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIER--VDSISVDPHK-YGLVPLGCSAV 227

Query: 209 YIR 211
            +R
Sbjct: 228 LVR 230

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 64  TSGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121
            SG TE+N  A++ A +    +KR  +II  ++ H S     +  E  G  + Y     +
Sbjct: 82  VSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSF---EKAAEMLGLELRYAPLDED 138

Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174
             + +  +E+ I  +TI +  +    E+G I  I E+ ++    G+  H DAA
Sbjct: 139 YTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAA 191

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373

>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 18/149 (12%)

Query: 124 ITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
           +   ++EE +  D  + +V +V+NE   GV+ P+ EI +  +  G +   DA  ++G   
Sbjct: 117 VDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEP 176

Query: 182 INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG-----------GHEY 229
           + +  + +D+    + K +  P G+  + +       IE + H               + 
Sbjct: 177 LKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKK 236

Query: 230 GLRSGTLATHQIVGMGEAFRLARIEMKEE 258
           G    T   + I  + EA  L    + EE
Sbjct: 237 GSTPYTPPVNLIYALREALDL----ILEE 261

Length = 383

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 19/119 (15%)

Query: 64  TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS------VLD-SIRKLE-NDGFRVTY 115
           TSG TE+N  A++ A +  K    +I+  ++ H S      +L   +R+   +D +RV  
Sbjct: 82  TSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD- 140

Query: 116 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174
                     +  +E+ I  +TI +  +    E+G + PI E+ ++    G+  H DAA
Sbjct: 141 ----------VKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAA 189

Length = 371

>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 43/196 (21%)

Query: 34  IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 93
           +YG   +         +A+L        ++    T++N LA+  AAH   + G+ +I  +
Sbjct: 30  VYG--EDPTTNALEQRIAELF--GKEAALFVPSGTQANQLAL--AAHC--QPGESVICHE 81

Query: 94  TEH--------KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI------L 139
           T H               +KL         + P  +G +T   +E  I  D I      L
Sbjct: 82  TAHIYTDECGAPEFFGGGQKL--------PIVPGADGKLTPEDVEAAIRPDDIHHAPTPL 133

Query: 140 VSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQNYK--VDL 191
             +     E G + P   +  I  +C+  G+  H D A+   A+  + + ++  K  VD 
Sbjct: 134 AVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDS 193

Query: 192 MSFSAHKIYGPKGIGA 207
           +SF        KG GA
Sbjct: 194 VSFC-----LTKGGGA 204

Length = 342

>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
           G  V  ++      ++  ++ E +    I  +V L +NE   GV+ P+  IG L +    
Sbjct: 97  GADVDVVEKPWGEAVSPEEIAEALEQHDI-KAVTLTHNETSTGVLNPLEGIGALAKKHDA 155

Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQ----- 221
           +   DA  ++G     +  + VD+    + K  G P G+G +        RI+ +     
Sbjct: 156 LLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKG 215

Query: 222 ----IHGGGHEYGLRSGTLAT---HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 274
               +      +G       T   + +  + EA  L     +E L+      +RL   L 
Sbjct: 216 FYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL---EEGLENRWARHRRLAKALR 272

Query: 275 ESIEEI 280
           E +E +
Sbjct: 273 EGLEAL 278

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356

>gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 102 SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
           +++++ + G     + P+  G + + ++E++     +L  +  V+ E G +    ++ ++
Sbjct: 113 NVKEVPHTGHPEYKVDPEGYGEV-IEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKV 171

Query: 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK---IYGPKGI 205
           CR KGV    + A  VG++ ++ +    D +  S HK     GP G+
Sbjct: 172 CREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGV 218

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. Length = 370

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 47/180 (26%), Positives = 68/180 (37%), Gaps = 35/180 (19%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTI-------LVSVMLVNNEIG--VIQP--ILEI 158
           G +   L     G + L  LE  I            L+S+   +N  G  V+    + EI
Sbjct: 95  GAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREI 154

Query: 159 GELCRSKGVIFHCD------AAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGAL---- 208
             + R  G+  H D      AA A+G I   I +Y  D +S S  K  G   +G++    
Sbjct: 155 RAIAREHGIPLHLDGARLANAAVALGVIVKEITSY-ADSVSMSLSKGLG-APVGSVLAGS 212

Query: 209 --YIRRNPRTRIEAQIHGGGHEYGLR-SGTLATHQIVGMGE-AFRLAR-IEMKEELKRIL 263
             +I    R R   +  GG    G+R +G LA   +  + E   RL R       L   L
Sbjct: 213 DDFIAYARRQR---KYLGG----GMRQAGVLAAAGLRALEEGVARLGRDHATARRLAEGL 265

Length = 288

>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 37/234 (15%)

Query: 25  FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFY 82
           +GNP S++     +++  IE AR +V +   A P +   ++TSGAT +  L + G    +
Sbjct: 63  YGNPHSQSDSSMRSSD-TIESARQQVLEYFNAPPSDYACVFTSGATAA--LKLVGETFPW 119

Query: 83  KKRGKHIITVQTEHKSVLDSIRK--LENDG------FRVTYLKPKNNGL---ITLSQLEE 131
                   T++  H SVL  IR+  LE               +P N+     +    L+ 
Sbjct: 120 SSESHFCYTLEN-HNSVL-GIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQR 177

Query: 132 KICS---------DTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFH--------CDA 173
           +  S         +   L +     N  G   P+  +  +  ++   F          DA
Sbjct: 178 RNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA 237

Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGG 226
           A+  G    ++  Y  D +  S +KI+G P G+GAL +RR+    ++ +  GGG
Sbjct: 238 AKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGG 291

Length = 805

>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated

 Score = 40.5 bits (96), Expect = 0.001
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 79  AHFYKKRGKHII--TVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD 136
           A    KR K ++   V  E++ VL +   L+  G  V  + P  +G+  L  LE  +  D
Sbjct: 148 AVRITKRKKVLVSGAVHPEYREVLKTY--LKGQGIEVVEV-PYEDGVTDLEALEAAVDDD 204

Query: 137 TILVSVMLVN-NEIGVIQPILEIGELCRSKGVIF 169
           T   +V++   N  GVI+ + EI E+  + G +F
Sbjct: 205 T--AAVVVQYPNFFGVIEDLEEIAEIAHAGGALF 236

Length = 447

>gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 20/106 (18%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 103 IRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 162
           + ++ N G+    + P+      + +++++      L  +  V+ E G +    ++ ++C
Sbjct: 124 VAEVPNTGYPEYKITPEGYAE-VIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKIC 182

Query: 163 RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY---GPKGI 205
           R  GV    + A  VG++ ++ +    D +  S HK      P G+
Sbjct: 183 REYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGV 228

Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	100.0
PRK14012	404	cysteine desulfurase; Provisional	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
KOG1549|consensus	428		100.0
PLN02651	364	cysteine desulfurase	100.0
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	100.0
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	100.0
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	100.0
PRK02948	381	cysteine desulfurase; Provisional	100.0
PRK10874	401	cysteine sulfinate desulfinase; Provisional	100.0
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	100.0
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	100.0
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	100.0
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	100.0
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	100.0
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	100.0
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	100.0
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	100.0
PLN02724	805	Molybdenum cofactor sulfurase	100.0
TIGR01814	406	kynureninase kynureninase. This model describes ky	100.0
PLN02409	401	serine--glyoxylate aminotransaminase	100.0
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	100.0
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	100.0
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	100.0
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	100.0
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	100.0
PRK02769	380	histidine decarboxylase; Provisional	100.0
PTZ00094	452	serine hydroxymethyltransferase; Provisional	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	100.0
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	100.0
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	100.0
PRK03080	378	phosphoserine aminotransferase; Provisional	100.0
PLN03032	374	serine decarboxylase; Provisional	100.0
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	100.0
PRK13520	371	L-tyrosine decarboxylase; Provisional	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	100.0
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	100.0
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	100.0
PRK06207	405	aspartate aminotransferase; Provisional	100.0
PRK05957	389	aspartate aminotransferase; Provisional	100.0
PRK06108	382	aspartate aminotransferase; Provisional	100.0
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	100.0
PRK07324	373	transaminase; Validated	100.0
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	100.0
PRK08960	387	hypothetical protein; Provisional	100.0
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	100.0
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	100.0
PLN02187	462	rooty/superroot1	100.0
PRK07681	399	aspartate aminotransferase; Provisional	100.0
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	100.0
PRK08361	391	aspartate aminotransferase; Provisional	99.98
KOG0259|consensus	447		99.98
PTZ00377	481	alanine aminotransferase; Provisional	99.98
PTZ00433	412	tyrosine aminotransferase; Provisional	99.98
PLN00175	413	aminotransferase family protein; Provisional	99.98
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.98
PRK06348	384	aspartate aminotransferase; Provisional	99.97
PRK07682	378	hypothetical protein; Validated	99.97
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.97
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.97
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.97
PRK09105	370	putative aminotransferase; Provisional	99.97
PRK05764	393	aspartate aminotransferase; Provisional	99.97
KOG0257|consensus	420		99.97
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.97
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.97
PLN02656	409	tyrosine transaminase	99.97
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.97
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.97
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.97
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.97
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.97
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.97
PRK07179	407	hypothetical protein; Provisional	99.97
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.97
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.97
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.97
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.97
PRK05942	394	aspartate aminotransferase; Provisional	99.97
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.97
PRK08363	398	alanine aminotransferase; Validated	99.97
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.97
PRK07568	397	aspartate aminotransferase; Provisional	99.97
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.97
PRK08068	389	transaminase; Reviewed	99.97
PRK08912	387	hypothetical protein; Provisional	99.97
PRK06107	402	aspartate aminotransferase; Provisional	99.97
PRK07337	388	aminotransferase; Validated	99.97
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.97
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.97
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.97
PRK12414	384	putative aminotransferase; Provisional	99.97
PRK09082	386	methionine aminotransferase; Validated	99.97
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.97
PRK07550	386	hypothetical protein; Provisional	99.97
PRK07683	387	aminotransferase A; Validated	99.97
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.97
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.97
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.97
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.97
PRK06290	410	aspartate aminotransferase; Provisional	99.97
PRK08636	403	aspartate aminotransferase; Provisional	99.97
PRK06855	433	aminotransferase; Validated	99.97
PRK09148	405	aminotransferase; Validated	99.97
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.97
PRK06836	394	aspartate aminotransferase; Provisional	99.97
PRK07908	349	hypothetical protein; Provisional	99.97
PRK09265	404	aminotransferase AlaT; Validated	99.97
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.97
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.97
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.97
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.97
PLN02822	481	serine palmitoyltransferase	99.97
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.97
KOG2862|consensus	385		99.97
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.97
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.97
PRK07777	387	aminotransferase; Validated	99.96
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.96
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.96
PRK03321	352	putative aminotransferase; Provisional	99.96
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.96
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.96
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.96
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.96
PRK08175	395	aminotransferase; Validated	99.96
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.96
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.96
PLN02721	353	threonine aldolase	99.96
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.96
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.96
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.96
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.96
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.96
PLN02231	534	alanine transaminase	99.96
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.96
PLN02483	489	serine palmitoyltransferase	99.96
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.96
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.96
PRK08861	388	cystathionine gamma-synthase; Provisional	99.96
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.96
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.96
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.96
PLN02452	365	phosphoserine transaminase	99.96
PRK06767	386	methionine gamma-lyase; Provisional	99.96
PLN02263	470	serine decarboxylase	99.96
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.96
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.96
PRK13392	410	5-aminolevulinate synthase; Provisional	99.96
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.96
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.96
PLN02880	490	tyrosine decarboxylase	99.96
PRK09064	407	5-aminolevulinate synthase; Validated	99.96
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.96
PRK08249	398	cystathionine gamma-synthase; Provisional	99.96
PRK05839	374	hypothetical protein; Provisional	99.96
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.95
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.95
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.95
PLN02590	539	probable tyrosine decarboxylase	99.95
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.95
PRK09028	394	cystathionine beta-lyase; Provisional	99.95
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.95
PLN02271	586	serine hydroxymethyltransferase	99.95
PLN02672	1082	methionine S-methyltransferase	99.95
PRK06234	400	methionine gamma-lyase; Provisional	99.95
PRK13393	406	5-aminolevulinate synthase; Provisional	99.95
PRK08114	395	cystathionine beta-lyase; Provisional	99.95
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.95
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.95
PRK08045	386	cystathionine gamma-synthase; Provisional	99.95
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.95
PRK05968	389	hypothetical protein; Provisional	99.95
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.95
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.95
PRK08776	405	cystathionine gamma-synthase; Provisional	99.95
PRK08064	390	cystathionine beta-lyase; Provisional	99.95
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.95
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.95
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.95
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.95
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.95
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.95
PRK09275	527	aspartate aminotransferase; Provisional	99.95
PLN02242	418	methionine gamma-lyase	99.95
PRK07503	403	methionine gamma-lyase; Provisional	99.95
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.95
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.95
PRK07811	388	cystathionine gamma-synthase; Provisional	99.95
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.95
PRK08574	385	cystathionine gamma-synthase; Provisional	99.95
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.95
PRK12462	364	phosphoserine aminotransferase; Provisional	99.95
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.95
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.95
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.95
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.95
PRK06460	376	hypothetical protein; Provisional	99.95
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.95
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.95
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.95
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.95
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.95
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.94
PRK05939	397	hypothetical protein; Provisional	99.94
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.94
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.94
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.94
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.94
PLN02509	464	cystathionine beta-lyase	99.94
PRK08354	311	putative aminotransferase; Provisional	99.94
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.94
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.94
PRK05967	395	cystathionine beta-lyase; Provisional	99.94
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.94
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.94
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.94
PRK05367	954	glycine dehydrogenase; Provisional	99.94
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.94
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.94
PRK07671	377	cystathionine beta-lyase; Provisional	99.94
PRK07049	427	methionine gamma-lyase; Validated	99.94
PRK07050	394	cystathionine beta-lyase; Provisional	99.94
PTZ00376	404	aspartate aminotransferase; Provisional	99.94
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.94
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.93
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.93
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.93
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.93
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.93
PRK12566	954	glycine dehydrogenase; Provisional	99.93
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.93
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.93
PRK08637	388	hypothetical protein; Provisional	99.93
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.93
PLN02955	476	8-amino-7-oxononanoate synthase	99.93
PRK10534	333	L-threonine aldolase; Provisional	99.93
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.93
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.93
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.93
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.93
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.93
PRK07582	366	cystathionine gamma-lyase; Validated	99.93
PLN02368	407	alanine transaminase	99.93
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.93
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.92
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.92
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.92
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.92
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.92
KOG0256|consensus	471		99.92
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.92
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.92
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.92
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.92
PRK07505	402	hypothetical protein; Provisional	99.92
PRK04311	464	selenocysteine synthase; Provisional	99.92
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.92
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.92
PLN02397	423	aspartate transaminase	99.91
KOG0634|consensus	472		99.91
PRK02627	396	acetylornithine aminotransferase; Provisional	99.91
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.91
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.91
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.91
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.91
PRK05367	954	glycine dehydrogenase; Provisional	99.91
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.91
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.9
PRK06434	384	cystathionine gamma-lyase; Validated	99.9
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.9
PLN00144	382	acetylornithine transaminase	99.9
KOG0053|consensus	409		99.89
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.89
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.89
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.89
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.89
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.89
PLN02624	474	ornithine-delta-aminotransferase	99.88
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.88
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.88
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.88
PRK04260	375	acetylornithine aminotransferase; Provisional	99.88
KOG1368|consensus	384		99.88
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.88
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.88
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.87
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.87
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.87
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	99.87
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.87
PRK06541	460	hypothetical protein; Provisional	99.87
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.87
KOG1359|consensus	417		99.87
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.87
PRK06105	460	aminotransferase; Provisional	99.87
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.87
KOG1360|consensus	570		99.86
PRK07678	451	aminotransferase; Validated	99.86
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.86
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.86
PRK15029	755	arginine decarboxylase; Provisional	99.86
PRK06062	451	hypothetical protein; Provisional	99.86
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.86
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.86
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.86
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.86
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.86
KOG1383|consensus	491		99.86
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.86
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.86
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.85
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.85
PRK13578	720	ornithine decarboxylase; Provisional	99.85
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.85
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.84
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.84
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.84
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.84
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.84
PRK07482	461	hypothetical protein; Provisional	99.84
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.84
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.84
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.84
PRK12403	460	putative aminotransferase; Provisional	99.84
PRK05965	459	hypothetical protein; Provisional	99.84
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.84
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.84
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.84
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.84
PRK07036	466	hypothetical protein; Provisional	99.83
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.83
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.83
KOG1402|consensus	427		99.83
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.83
PRK07483	443	hypothetical protein; Provisional	99.83
PRK06149	972	hypothetical protein; Provisional	99.82
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.82
PRK07481	449	hypothetical protein; Provisional	99.82
PRK07480	456	putative aminotransferase; Validated	99.82
PRK07046	453	aminotransferase; Validated	99.82
KOG1404|consensus	442		99.82
PRK15400	714	lysine decarboxylase CadA; Provisional	99.82
PRK13237	460	tyrosine phenol-lyase; Provisional	99.82
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.81
KOG3846|consensus	465		99.81
PRK06917	447	hypothetical protein; Provisional	99.81
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.81
PRK06148	1013	hypothetical protein; Provisional	99.81
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.81
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.8
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.8
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.8
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.8
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.79
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.78
KOG2467|consensus	477		99.78
KOG1357|consensus	519		99.77
KOG0633|consensus	375		99.76
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.76
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.76
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.75
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.75
PRK08297	443	L-lysine aminotransferase; Provisional	99.75
KOG1358|consensus	467		99.75
KOG0629|consensus	510		99.74
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.73
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.71
KOG1401|consensus	433		99.69
KOG0258|consensus	475		99.68
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.68
KOG2040|consensus	1001		99.68
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.67
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.65
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.65
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.62
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.6
KOG0628|consensus	511		99.59
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.55
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.54
KOG2790|consensus	370		99.53
PRK12566	954	glycine dehydrogenase; Provisional	99.52
KOG1403|consensus	452		99.42
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.36
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.34
KOG1412|consensus	410		99.3
COG4100	416	Cystathionine beta-lyase family protein involved i	98.98
KOG2040|consensus	1001		98.93
KOG1411|consensus	427		98.76
KOG1405|consensus	484		98.65
KOG3843|consensus	432		98.29
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	98.01
KOG2142|consensus	728		95.81
PLN02672	1082	methionine S-methyltransferase	85.9
KOG0630|consensus	838		85.43
KOG1465|consensus	353		83.34

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=8.9e-62  Score=431.55  Aligned_cols=377  Identities=59%  Similarity=0.933  Sum_probs=360.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      |||++++|+.++|.++|..++...++||++ .|.+|+...+.++++|+.+++++|+++++|+||+|+|+++++++++...
T Consensus         5 lD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~   83 (386)
T COG1104           5 LDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAAL   83 (386)
T ss_pred             ccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHH
Confidence            799999999999999999999999999999 9999999999999999999999999999999999999999999998554


Q ss_pred             hhc--cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          81 FYK--KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        81 ~~~--~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      .+.  +++.+|+++.-+|++....++.+...|++|+++|++.+|.+|+++|+++++++|.+|.+.+.+|.+|++.|+++|
T Consensus        84 a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei  163 (386)
T COG1104          84 AYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEI  163 (386)
T ss_pred             hhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHH
Confidence            442  368899999999999999999997779999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
                      .++|+++|+++|+|++|++|..++|+..+++|++++|.||+.||.|+|++++++  ...+.+.+.||++..++++||.|.
T Consensus       164 ~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~--~~~~~p~i~GGgQE~g~RsGTenv  241 (386)
T COG1104         164 GEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRP--GVRLEPLIHGGGQERGLRSGTENV  241 (386)
T ss_pred             HHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEECC--CCccCceeccCcCCCCCCCCCccH
Confidence            999999999999999999999999999989999999999999999999999963  556789999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEec
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVS  316 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~  316 (397)
                      ++++++..|++...+.++...+++..++++|.+.|.+..|++.+.+.+..+.++.+.+.|++.+.+.+...|.  ||+++
T Consensus       242 ~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vS  321 (386)
T COG1104         242 PGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVS  321 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCeEEe
Confidence            9999999999999999999999999999999999998569999998888899999999999999999999998  99999


Q ss_pred             ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccc
Q psy8850         317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLW  380 (397)
Q Consensus       317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~  380 (397)
                      .|+.|+.+..+||++|.++|.+....++.||||++..++++|+|++++.|.++++++++.+|+|
T Consensus       322 tGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~~~~~  385 (386)
T COG1104         322 TGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRELSPLW  385 (386)
T ss_pred             ccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999988

>TIGR02006 IscS cysteine desulfurase IscS

Probab=100.00  E-value=1.5e-53  Score=402.18  Aligned_cols=396  Identities=70%  Similarity=1.138  Sum_probs=353.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++|+|+.+++++.+++...+++|.+..+..++...+.++++++.+++++|+++++|++++|+|+++++++.++..
T Consensus         7 ld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~   86 (402)
T TIGR02006         7 LDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAH   86 (402)
T ss_pred             eeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence            79999999999999999999877677877534555556667899999999999999888999999999999999887653


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                      ...++|++|+++.++|+++...+..+...|.+++.++.++++.+|+++++++++++++++++++++|+||.+.|+++|.+
T Consensus        87 ~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~  166 (402)
T TIGR02006        87 FYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGE  166 (402)
T ss_pred             hhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHH
Confidence            33367899999999999999888776666999999999988889999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhH
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ  240 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (397)
                      +|+++|+++++|+++++|..++++..+++|++++|+||++||.|+|+++++++....+.+...+++...+++.|+++...
T Consensus       167 l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~  246 (402)
T TIGR02006       167 ICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQ  246 (402)
T ss_pred             HHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccCCCCCCCceecCCCccCCccCCCccHHH
Confidence            99999999999999999999989888899999999999889989999999987776677766666666678889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCCcEecccCc
Q psy8850         241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSA  320 (397)
Q Consensus       241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~~  320 (397)
                      +.++.++++++.++++...++..++++++.+.|++ ++++.+.++...+.+..+.+.|+..+...+...++++.++.|..
T Consensus       247 ~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l~~i~v~~G~~  325 (402)
T TIGR02006       247 IVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKS-IEEVYLNGDLEHRVPGNLNVSFNYVEGESLIMALKDLAVSSGSA  325 (402)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCeEEEEEeCcCHHHHHHhcCCEEEechhh
Confidence            99999999998888888999999999999999998 88888876544455555567787767778888888999999999


Q ss_pred             cCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccchhhhccccccccccccC
Q psy8850         321 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH  397 (397)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (397)
                      |.+....+++.++.+|+......+.||+|++.++|++|||++++.|+++++.+++..+.|+|-+++-|+++++|+-|
T Consensus       326 c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (402)
T TIGR02006       326 CTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRELSPLWEMFKEGVDLNSIEWAAH  402 (402)
T ss_pred             cCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhccccCCccccCCCCC
Confidence            99988888999999999877778999999999999999999999999999999999999999999999999999988

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK14012 cysteine desulfurase; Provisional

Probab=100.00  E-value=1.1e-51  Score=389.83  Aligned_cols=396  Identities=70%  Similarity=1.149  Sum_probs=342.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHh--hccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLR--VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA   78 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l   78 (397)
                      ||+++++|+|+.+++++.+++.  ..++++++..+..++...+...++++.+++++|++++++++++|+|+|+++++.++
T Consensus         7 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l   86 (404)
T PRK14012          7 LDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGA   86 (404)
T ss_pred             ecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHH
Confidence            7999999999999999999987  55667765344445555678889999999999998888999999999999998877


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      .....++||+|++++.+|+++...+..+...|.+++.++.++++.+|++++++++++++++|++++++|+||.+.|+++|
T Consensus        87 ~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I  166 (404)
T PRK14012         87 AHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAI  166 (404)
T ss_pred             HHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHH
Confidence            54333678999999999999988887766669999999999889899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
                      .++||++|+++|+|++++.|..++++...++|++++|+||++||.|+|+++++++....+.+...+++...+++.++++.
T Consensus       167 ~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~  246 (404)
T PRK14012        167 GEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPT  246 (404)
T ss_pred             HHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecCCCCCCCceecCCCccCCccCCCcCH
Confidence            99999999999999999999988888878899999999998888889999999876666666566655555577889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCCcEeccc
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG  318 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g  318 (397)
                      ..++++.++++....++....++..++++++.+.|++ ++++.+.+......+..+.+.|...+..++...|+++.+..|
T Consensus       247 ~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~g  325 (404)
T PRK14012        247 HQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD-IEEVYLNGDLEQRVPGNLNVSFNYVEGESLIMALKDLAVSSG  325 (404)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCEEEEEEeCcCHHHHHHhCCCeEEEch
Confidence            9999999999988777788889999999999999998 888887654333334455566654455678888889999999


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccchhhhccccccccccccC
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH  397 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (397)
                      ..|.+....+.+.+..+++......+.||++++.++|++|+|++++.|+++++.+++.++.|+|-+++-|.++++|+||
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (404)
T PRK14012        326 SACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRELSPLWEMFKEGVDLNSIEWAHH  404 (404)
T ss_pred             hhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhccchhhccccCCCCccCCCCC
Confidence            9998877777777888888777778999999999999999999999999999999999999999999999999999999

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.6e-51  Score=377.94  Aligned_cols=358  Identities=30%  Similarity=0.454  Sum_probs=327.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||++++++.|..|.+++.+++..+++|++++.|..+....+.++++|+.+++++|+++ ++|+||.|+|+|+++++.++.
T Consensus        26 lD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~  105 (405)
T COG0520          26 LDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLG  105 (405)
T ss_pred             ecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhh
Confidence            6999999999999999999999989999988888888889999999999999999985 889999999999999999985


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHhhC-CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      .. .++||+|++++.+|+++...|..+++. |++++++|.+++|.++.++++++++++|++|.+++.+|.||.+.|+++|
T Consensus       106 ~~-~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I  184 (405)
T COG0520         106 RS-LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEI  184 (405)
T ss_pred             hh-hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHH
Confidence            32 167899999999999999999999876 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH----------  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~----------  227 (397)
                      +++||++|+++++|++|+.+..++|++.+++|++++|+|| ++||.|+|+++++++..+.+.|...||..          
T Consensus       185 ~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~  264 (405)
T COG0520         185 AELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGV  264 (405)
T ss_pred             HHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeecccccc
Confidence            9999999999999999999999999999999999999999 89999999999999999998877766532          


Q ss_pred             -----cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC
Q psy8850         228 -----EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI  301 (397)
Q Consensus       228 -----~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (397)
                           ..+|+.||+|..+.+++.++++++.+ ++.++.++.+++.+++.+.|.+ ++++.+++++......++.|.+++.
T Consensus       265 ~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~-~~~v~i~g~~~~~r~~~vsF~v~~~  343 (405)
T COG0520         265 TLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSE-LPGVEIYGPPDADRGGIVSFNVKGI  343 (405)
T ss_pred             cccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCcccCceEEEEEeCCC
Confidence                 35678999999999999999999976 6899999999999999999999 9999999876533367889999999


Q ss_pred             ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ...++...|.  +|+++.|.+|..      ..++.++..     ..+|+|++.|+|.+|||+++++|+++.+
T Consensus       344 ~~~dv~~~L~~~gI~vr~g~~ca~------p~~~~~~~~-----~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         344 HPHDVATLLDEKGIAVRAGHHCAQ------PLHRLLGVD-----ATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             CHHHHHHHHHhCCeEEEecccccc------HHHHhcCCC-----CceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence            9999999997  899999999986      456666666     4599999999999999999999998764

>KOG1549|consensus

Probab=100.00  E-value=8.3e-52  Score=368.74  Aligned_cols=380  Identities=56%  Similarity=0.911  Sum_probs=343.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++|+++.|.+++.+++...++||++ . .++|......++.|+.+|+++|+++.+|+||+|+|+++++++++..+
T Consensus        47 ld~~at~p~~~~Vldam~~~~~~~~~nPh~-~-~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~  124 (428)
T KOG1549|consen   47 LDNQATGPMDPRVLDAMLPYLLEYLGNPHS-R-SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVAR  124 (428)
T ss_pred             EecCcCCCCCHHHHHHHHHHHHHhhcCCCc-c-ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhc
Confidence            699999999999999999999999999999 4 56777788899999999999999988899999999999999999887


Q ss_pred             hhcc-CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHH
Q psy8850          81 FYKK-RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        81 ~~~~-~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                      .+.+ ...+|++.+.+|++...++..+.+.|+.++.+|++.+|.+|++.+++.|+++|++|.+.+.+|.+|++.|+++|+
T Consensus       125 ~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~  204 (428)
T KOG1549|consen  125 FFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIV  204 (428)
T ss_pred             cccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHH
Confidence            4432 223999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEec-CCCCccccccccCCccccccCCCCch
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
                      .+||++|+.+++|+||+.|..++|..++++|++++|.||++||+|+|++|+++ ...-+..+.+.||+....++.||.++
T Consensus       205 ~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr~~~~~~~~~p~~~GGgq~r~~rsGT~~~  284 (428)
T KOG1549|consen  205 KICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKRPRLRVEPPLSGGGQERGLRSGTVAT  284 (428)
T ss_pred             HHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEccCCCcccccCcccCCccccccccCCcCc
Confidence            99999999999999999999999999999999999999999999999999997 33344567888999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCCcEeccc
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG  318 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g  318 (397)
                      +....+.+|.++....+......+.++-..+...+....+++.+.+.+....+.+.++.|+......+...++.+.++.|
T Consensus       285 ~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~  364 (428)
T KOG1549|consen  285 PLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSG  364 (428)
T ss_pred             hhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhCchhhccCCcccccccceeeecccccCcchhhhhhhhhhccc
Confidence            99999999999987765555666666777777777665688878888777778899999986667788888888999999


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccchh
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDM  382 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~  382 (397)
                      ..|.....+|++.++..|.+....+.+|||+++.+++++|++++++.+.+.+..+++.+|.|-|
T Consensus       365 ~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~~s~l~~~  428 (428)
T KOG1549|consen  365 SACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLREMSPLWEM  428 (428)
T ss_pred             chhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence            9997767899999999999988999999999999999999999999999999999999999843

>PLN02651 cysteine desulfurase

Probab=100.00  E-value=2.7e-49  Score=368.75  Aligned_cols=360  Identities=62%  Similarity=0.988  Sum_probs=323.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.+++++.+++...+++|++..+..++...+.++++++.+++++|++++++++++|+|+++++++.++..
T Consensus         3 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~   82 (364)
T PLN02651          3 LDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMH   82 (364)
T ss_pred             ccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence            79999999999999999999987778887644555667778899999999999999888999999999999999887754


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                      ...++|++|++++.+|+++...+..+...|.+++.++.++++.+|+++++++++++++++++++++|+||.+.|+++|.+
T Consensus        83 ~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~  162 (364)
T PLN02651         83 FYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGE  162 (364)
T ss_pred             hccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHH
Confidence            44467899999999999998888777666999999999888889999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhH
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ  240 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (397)
                      +||++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++....+.+...+++...+++.||+|...
T Consensus       163 ~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~  242 (364)
T PLN02651        163 LCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPL  242 (364)
T ss_pred             HHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHH
Confidence            99999999999999999999999999999999999999989999999999998888888888777766778899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC--CCCCceEEEEecCCChHHHHHHhCCcEeccc
Q psy8850         241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--NRIPHNLNISFNFIEGESLLMAIKDIAVSSG  318 (397)
Q Consensus       241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g  318 (397)
                      ++++.++++++.++.+++.++..++.+++.+.|++.++++.+.++..  .+.++++.|.+++.++.++...|.+|.++.|
T Consensus       243 ~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~i~v~~g  322 (364)
T PLN02651        243 VVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKEVAVSSG  322 (364)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCCEEEEch
Confidence            99999999999887888899999999999999986367999998632  3457788999988888899999988999999


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHH
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID  360 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~  360 (397)
                      ..|.+....++..++.+|.......+.+|+|++.++|++|||
T Consensus       323 ~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        323 SACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             hhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence            999998888899999999876666789999999999999985

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=100.00  E-value=1.1e-48  Score=367.27  Aligned_cols=372  Identities=47%  Similarity=0.782  Sum_probs=326.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.|++++.+++....++|.. .+..+....+.++++++.+++++|+++++|++++|+|+++++++.++..
T Consensus         3 ld~aa~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~   81 (379)
T TIGR03402         3 LDNNATTRVDPEVLEAMLPYFTEYFGNPSS-MHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALA   81 (379)
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence            799999999999999999999877788886 5666666778899999999999999988999999999999999987642


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                      .. .++++|+++..+|+++...+..+...|.+++.+|.+++|.+|+++++++++++++++++++++|+||.+.|+++|.+
T Consensus        82 ~~-~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~  160 (379)
T TIGR03402        82 AQ-PEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGE  160 (379)
T ss_pred             hc-CCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHH
Confidence            21 34689999999999998888877667999999999888889999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhH
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ  240 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (397)
                      +|+++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++.  .+.+...++.....++.|+++...
T Consensus       161 l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~--~~~p~~~g~~~~~~~~~gt~~~~~  238 (379)
T TIGR03402       161 IAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGT--RFRPLLRGGHQERGRRAGTENVPG  238 (379)
T ss_pred             HHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCceEEEEECCCC--CCCCcccCCccCCCcCCCCccHHH
Confidence            999999999999999999999999888999999999998899999999998764  345666555555567789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEeccc
Q psy8850         241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSG  318 (397)
Q Consensus       241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g  318 (397)
                      ++++.+++++..++++...++..++++++++.|.+.++++.+.+++..+.++.+.+.++..++.++...|.  ||.+..|
T Consensus       239 ~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g  318 (379)
T TIGR03402       239 IVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSG  318 (379)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEch
Confidence            99999999999888888889999999999999984378888887654444667888888778888888876  9999999


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ..|.++...++..++.+|.......+.+|+|++.++|++|||++++.|+++++++++.
T Consensus       319 ~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~~  376 (379)
T TIGR03402       319 SACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRAM  376 (379)
T ss_pred             hhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            9999987778889999998766667899999999999999999999999999887763

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=100.00  E-value=2.4e-47  Score=358.30  Aligned_cols=372  Identities=45%  Similarity=0.699  Sum_probs=321.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++++++++.|++++.+++...++||++ .+.++......+.+.++.+.+.+++ ++++|++|+|+|+++++++.++.
T Consensus         3 ld~aa~~~~~~~v~~~~~~~~~~~~~n~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~   81 (382)
T TIGR03403         3 LDNNATTMLDPKVKELMDPFFCDIYGNPNS-LHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVY   81 (382)
T ss_pred             ccCcCCCCCCHHHHHHHHHHHHhcCcCCcc-ccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHH
Confidence            799999999999999999999988889986 6666666666777777777877887 67899999999999999998764


Q ss_pred             hh-h-ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850          80 HF-Y-KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        80 ~~-~-~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                      .. . ..++++|+++..+|+++...+..+...|.+++.+|.++++.+|+++++++++++++++++++++||||.+.|+++
T Consensus        82 ~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~  161 (382)
T TIGR03403        82 FDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKE  161 (382)
T ss_pred             HhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHH
Confidence            21 1 133578999999999999988777667999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
                      |.++|+++|+++++|++++.|..++++..+++|++++|+||++||.|+|++++++..  .+.+.+.++.....++.|+++
T Consensus       162 I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~  239 (382)
T TIGR03403       162 IGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--ELTPLFHGGEHMGGRRSGTLN  239 (382)
T ss_pred             HHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEEECCCC--CCCCcccCCCCCCCcccCCcC
Confidence            999999999999999999999888888888999999999999999999999998764  344555555444567789999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV  315 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~  315 (397)
                      ...++++.+++++..+.++...+++.++++++.+.|++ ++++.+.++...+.++++.+.+++.+..++...|.  ||.+
T Consensus       240 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v  318 (382)
T TIGR03403       240 VPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAA  318 (382)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEE
Confidence            99999999999988877888889999999999999998 89999887654455667788888778888887776  9999


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      +.|..|.+...+++.++..+|...+..++.||+|+..++|.+|||+++++|+++++++++.
T Consensus       319 ~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~~  379 (382)
T TIGR03403       319 STGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRAI  379 (382)
T ss_pred             EchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            9999998888888899999998766667899999999999999999999999999887753

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=100.00  E-value=1.5e-46  Score=355.39  Aligned_cols=357  Identities=22%  Similarity=0.338  Sum_probs=305.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++++|+|+.|++++.+++...++|++++.+..+....+..+++|+.+++++++ ++++|++|+|+|++++.++.++.
T Consensus        27 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~  106 (406)
T PRK09295         27 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWG  106 (406)
T ss_pred             EeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhh
Confidence            69999999999999999999987777876656666777788999999999999998 57789999999999999998753


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ....++||+|++++++|++....+..+. ..|++++.++.++++.+|++++++++++++++|++++++||||.+.|+++|
T Consensus       107 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i  186 (406)
T PRK09295        107 NSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEM  186 (406)
T ss_pred             hhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHH
Confidence            2223788999999999999877776654 359999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc-----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----------  227 (397)
                      .++|+++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++..+.+.+...++..           
T Consensus       187 ~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  266 (406)
T PRK09295        187 IALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTT  266 (406)
T ss_pred             HHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccc
Confidence            999999999999999999999988888889999999999988999999999998876666554333211           


Q ss_pred             ----cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC
Q psy8850         228 ----EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE  302 (397)
Q Consensus       228 ----~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (397)
                          ..+++.|+++...++++.++++++.+ +++.+.++..++++++.+.|++ ++++.+.++. .+ .+++.+.+++.+
T Consensus       267 ~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~~-~~-~~iv~~~~~~~~  343 (406)
T PRK09295        267 WAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQ-NR-LGVIAFNLGKHH  343 (406)
T ss_pred             cCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCC-CC-ceEEEEEECCcC
Confidence                14578899999999999999999876 7889999999999999999998 8899888753 22 467788887777


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ..++...|.  ||.++.|..|..      ..+..+|..     +.+|+|++.++|.+|||+++++|+++..
T Consensus       344 ~~~~~~~L~~~gI~v~~g~~c~~------~~~~~~~~~-----~~iRiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        344 AYDVGSFLDNYGIAVRTGHHCAM------PLMAYYNVP-----AMCRASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             HHHHHHHHHhCCeEEeccccchH------HHHHHHCCC-----CEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            777877776  899999988875      455555533     6899999999999999999999998754

>PRK02948 cysteine desulfurase; Provisional

Probab=100.00  E-value=7.7e-46  Score=348.13  Aligned_cols=369  Identities=36%  Similarity=0.540  Sum_probs=314.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.+++++.+++...++++.+ .+..+......++++++.+++++|+++++|++++|+|+++..++.++..
T Consensus         4 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~   82 (381)
T PRK02948          4 LDYAATTPMSKEALQTYQKAASQYFGNESS-LHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLN   82 (381)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence            799999999999999999999887788876 7777777778899999999999999888999999999999999888764


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                      ...++|++|+++..+|+++...+..+...|.+++.++.++++.+|++++++++++++++|++++++||||.+.|+++|.+
T Consensus        83 ~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~  162 (381)
T PRK02948         83 ALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGA  162 (381)
T ss_pred             hccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHH
Confidence            33356899999999999999988877777999999999888889999999999989999999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhH
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ  240 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (397)
                      +|+++|+++++|+++++|..++++..+++|++++|+||++||.|+|+++++++.  .+.+...++....+++.++++.+.
T Consensus       163 l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~--~~~~~~~~~~~~~~~~~~t~~~~~  240 (381)
T PRK02948        163 LLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQV--RWKPVFPGTTHEKGFRPGTVNVPG  240 (381)
T ss_pred             HHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCCC--CCCCcccCCCCCCCcCCCCccHHH
Confidence            999999999999999999888888888999999999998899999999998764  122223233334567789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecc
Q psy8850         241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSS  317 (397)
Q Consensus       241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~  317 (397)
                      ++++.++++...+++++..+++.++++++.+.|++ ++ .+...+......+.++.+.+++.+..++...|.  ||.++.
T Consensus       241 ~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~  319 (381)
T PRK02948        241 IAAFLTAAENILKNMQEESLRFKELRSYFLEQIQT-LPLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAIST  319 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEc
Confidence            99999999988778888999999999999999998 53 222222223344556667777667777777765  999999


Q ss_pred             cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         318 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      |..|..+..+|+..++++|...+...+++|||++.++|++|+|++++.|+++++++
T Consensus       320 g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~  375 (381)
T PRK02948        320 GSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQF  375 (381)
T ss_pred             hHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99998877778899999997554556899999999999999999999999987654

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=100.00  E-value=5.5e-46  Score=351.36  Aligned_cols=358  Identities=23%  Similarity=0.346  Sum_probs=304.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++++++|+.+.+++.+++....++++++.+..+....+.++++++.+++++|+ ++++|++++|+|+++++++.++.
T Consensus        23 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~  102 (401)
T PRK10874         23 LDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYA  102 (401)
T ss_pred             EeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhh
Confidence            79999999999999999999988778877656666777888999999999999999 77899999999999999999874


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ....++|++|++++++|++....+..+ ...|.+++.+|.+.++.+|+++++++++++|++|++++++|+||.+.|+++|
T Consensus       103 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i  182 (401)
T PRK10874        103 RPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARA  182 (401)
T ss_pred             hccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHH
Confidence            211168899999999999987666654 3449999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC------------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------------  226 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~------------  226 (397)
                      .++|+++|+++++|++|+.+..++++..+++|++++|+||++||.|+|+++++++..+.+.+...++.            
T Consensus       183 ~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (401)
T PRK10874        183 ITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTP  262 (401)
T ss_pred             HHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcceEeeccCccCC
Confidence            99999999999999999988888888778899999999998899999999999887777665442221            


Q ss_pred             --ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCCh
Q psy8850         227 --HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEG  303 (397)
Q Consensus       227 --~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (397)
                        ...+++.|++|+..++++.++++++.+ ++.+..++..++++++.+.|++ ++++.+..++.   ..++.+.+++.+.
T Consensus       263 ~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~-~~g~~~~~~~~---~~i~~~~~~~~~~  338 (401)
T PRK10874        263 QSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAK-LPGFRSFRCQD---SSLLAFDFAGVHH  338 (401)
T ss_pred             CCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCC---CcEEEEEECCcCH
Confidence              124677899999999999999998754 5777889999999999999998 88988776543   4567777777777


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .++.+.|.  ||.+..|..|..      ..+..+|..     ++||+|++.++|++|||+++++|+++++.+
T Consensus       339 ~~~~~~L~~~gI~v~~g~~~~~------~~~~~~g~~-----~~iRiS~~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        339 SDLVTLLAEYGIALRAGQHCAQ------PLLAALGVT-----GTLRASFAPYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             HHHHHHHHHCCcEEeccccchH------HHHHHhCCC-----CEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence            78877776  999999887764      445555543     789999999999999999999999987754

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=100.00  E-value=7.9e-46  Score=352.23  Aligned_cols=363  Identities=26%  Similarity=0.333  Sum_probs=309.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++++++|+.|++++.+++.....++.++.+..+....+.+.++++.++++++++ +++|++++|+|++++.++.++.
T Consensus        36 Ld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~  115 (424)
T PLN02855         36 LDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWG  115 (424)
T ss_pred             eeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhh
Confidence            799999999999999999999887777766455555566678899999999999995 5789999999999999988652


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ....++|++|++++++|++....+..+. ..|.+++.++.+.++.+|++++++.+++++++|++++++|+||.+.|+++|
T Consensus       116 ~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I  195 (424)
T PLN02855        116 LANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDI  195 (424)
T ss_pred             hhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHH
Confidence            2112688999999999999887777654 349999999998777799999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc-----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----------  227 (397)
                      +++|+++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++..+.+.+...++..           
T Consensus       196 ~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~  275 (424)
T PLN02855        196 VHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTY  275 (424)
T ss_pred             HHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCcccc
Confidence            999999999999999999998888888888999999999988999999999998887777665444321           


Q ss_pred             ---cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---CCCCceEEEEecC
Q psy8850         228 ---EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---NRIPHNLNISFNF  300 (397)
Q Consensus       228 ---~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~  300 (397)
                         ..+++.||++...++++.++++++.+ +++++.++..++++++++.|++ ++++.++++..   ....+++.|.+++
T Consensus       276 ~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-~~g~~i~~~~~~~~~~r~~~v~~~~~~  354 (424)
T PLN02855        276 APPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSS-VPGVRIYGPKPSEGVGRAALCAFNVEG  354 (424)
T ss_pred             CCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCcccccCcccEEEEEECC
Confidence               34578899999999999999998866 7999999999999999999998 88999887542   2235688888887


Q ss_pred             CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      .+..++...|.   +|.++.|.+|.+      ...+.+|..     ..+|+|++.++|.+|||+++++|+++++.+++
T Consensus       355 ~~~~~v~~~L~~~~gI~v~~g~~c~~------~~~~~~g~~-----~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~~  421 (424)
T PLN02855        355 IHPTDLSTFLDQQHGVAIRSGHHCAQ------PLHRYLGVN-----ASARASLYFYNTKEEVDAFIHALKDTIAFFSS  421 (424)
T ss_pred             cCHHHHHHHhcccCCEEEechhhhhH------HHHHHhCCC-----CeEEEEeccCCCHHHHHHHHHHHHHHHHHHHh
Confidence            77788888884   899999888764      334555544     68999999999999999999999999988765

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=100.00  E-value=4.7e-46  Score=351.45  Aligned_cols=358  Identities=23%  Similarity=0.320  Sum_probs=302.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++++++|+.+++++.+++....+++++..+..+....+.++++|+.+++++|++ +++|++|+|+|+++++++.++.
T Consensus        20 ld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~   99 (398)
T TIGR03392        20 LDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYA   99 (398)
T ss_pred             eeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhh
Confidence            799999999999999999999876778876456666677788999999999999994 7889999999999999999874


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ....++||+|++++++|++....+..+ ...|.+++.+|.+.++.+|++++++++++++++|++++++||||.+.|+++|
T Consensus       100 ~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i  179 (398)
T TIGR03392       100 RPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARA  179 (398)
T ss_pred             hccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHH
Confidence            211168899999999999976665544 4459999999998878899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC------------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------------  226 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~------------  226 (397)
                      .++|+++|+++++|++|+.+..++++..+++|++++|+||++||.|+|+++++++....+.+...++.            
T Consensus       180 ~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (398)
T TIGR03392       180 ITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIP  259 (398)
T ss_pred             HHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceEeecccccccc
Confidence            99999999999999999988888888777899999999998899899999999887766655432221            


Q ss_pred             --ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCCh
Q psy8850         227 --HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEG  303 (397)
Q Consensus       227 --~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (397)
                        ...+++.|+++...++++.++++++.+ ++.++.++..++++++.+.|++ ++++.+...+.   ..++.+.+++.+.
T Consensus       260 ~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~-l~g~~~~~~~~---~~i~~~~~~~~~~  335 (398)
T TIGR03392       260 QAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQ-LPGFRSFRCPG---SSLLAFDFAGVHH  335 (398)
T ss_pred             CCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCC---CcEEEEEeCCcCH
Confidence              124678899999999999999998855 5778889999999999999998 88888775443   4577777777777


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .++...|.  ||.+..|..|..      ..+..+|..     ++||+|++.++|.+||++++++|+++++.+
T Consensus       336 ~~l~~~L~~~gI~v~~g~~~~~------~~~~~~g~~-----~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       336 SDLAALLAESGIALRAGQHCAQ------PLMAALGVS-----GTLRASFAPYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             HHHHHHHHhCCEEEecCccchH------HHHHHhCCC-----CEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence            78888876  999999987764      445555533     789999999999999999999999987754

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=100.00  E-value=3.3e-44  Score=339.70  Aligned_cols=361  Identities=27%  Similarity=0.389  Sum_probs=302.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++.+++|+.+.+++.+++...+++++.+.+..+....+..+++++.+++++|++ +++|++++|+|+++.+++.++.
T Consensus        22 ld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~  101 (403)
T TIGR01979        22 LDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWG  101 (403)
T ss_pred             EeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhh
Confidence            699999999999999999998877778776455556666778999999999999998 6789999999999999988764


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ....++|++|++++++|++....+..+. ..|.+++.++.++++.+|++++++++++++++|++++++|+||.+.|+++|
T Consensus       102 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i  181 (403)
T TIGR01979       102 DSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEI  181 (403)
T ss_pred             hhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHH
Confidence            2222689999999999999887776554 349999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc-----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----------  227 (397)
                      .++|+++|+++++|++|+.+..++++..+++|++++|+||++||.|+|+++++++....+.+...++..           
T Consensus       182 ~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  261 (403)
T TIGR01979       182 AKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTY  261 (403)
T ss_pred             HHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecccCcccc
Confidence            999999999999999999998888888788999999999988998999999998776666554433311           


Q ss_pred             ---cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC-CCCceEEEEecCCC
Q psy8850         228 ---EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNFIE  302 (397)
Q Consensus       228 ---~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  302 (397)
                         ..+++.|+++...++++.++++++.+ +++++.++..++++++++.|++ ++++.+..+... ..++++.+.+++.+
T Consensus       262 ~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~g~~~~~~~~~~~~~~~v~~~~~~~~  340 (403)
T TIGR01979       262 NEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGLRIYGPRDAEDRGGIISFNVEGVH  340 (403)
T ss_pred             CCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCccccCceEEEEeCCcC
Confidence               13456789999999999999998865 6888999999999999999998 889988865432 33567778887767


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..++.+.|.  ||.+..|..|..      ..+..+|.     ++++|||++.+++.+||++++++|+++++.+
T Consensus       341 ~~~~~~~L~~~gI~v~~g~~~~~------~~~~~~~~-----~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       341 PHDVGTILDEEGIAVRSGHHCAQ------PLMRRFGV-----PATCRASFYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             HHHHHHHHhhCCEEEcchhhhhH------HHHHHhCC-----CCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence            778877776  899988876653      33444442     3789999999999999999999999887654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=100.00  E-value=4.6e-44  Score=332.66  Aligned_cols=348  Identities=49%  Similarity=0.770  Sum_probs=303.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++.+++|+.+++++.+++...+++|+...+..+....+.++++++.+++++++++++|++++|+|+|++.++.++..
T Consensus         2 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~   81 (353)
T TIGR03235         2 LDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLAR   81 (353)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence            79999999999999999999876667776534444555567789999999999999988999999999999999988763


Q ss_pred             hhccCC-CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHH
Q psy8850          81 FYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        81 ~~~~~g-~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                      ...++| ++|+++..+|+++...+..+...|.+++.++.++++.+|++++++++++++++|++++++||||.+.|+++|.
T Consensus        82 ~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~  161 (353)
T TIGR03235        82 AGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIA  161 (353)
T ss_pred             hcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHH
Confidence            221244 8899999999999998887766799999999988888999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCC--ccccccccCCccccccCCCCc
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRT--RIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  237 (397)
                      ++|+++|+++++|+++++|..++++..+++|++++|+||++||.|+|+++++++...  .+.+...++....+++.++++
T Consensus       162 ~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  241 (353)
T TIGR03235       162 EVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLP  241 (353)
T ss_pred             HHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCcccccccCceeeCCCCcCccccCCCC
Confidence            999999999999999999999999888899999999999889999999999987543  245555655555678889999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-CcEec
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-DIAVS  316 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~~  316 (397)
                      ...++++.++++++.++.+++.+++.++++++++.|++  +++.+..++....+.++.+.+++.+..++...|. +|.+.
T Consensus       242 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~--~g~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~~i~v~  319 (353)
T TIGR03235       242 VHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT--LGVKLNGDPAETIPHILNFSIDGVNSEALIVNLRADAAVS  319 (353)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--CCeEEeCCcccccCCEEEEEeCCcCHHHHHHHHhCCeEEE
Confidence            99999999999998878889999999999999999988  7888886655555677888888778888888887 89999


Q ss_pred             ccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850         317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTI  350 (397)
Q Consensus       317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  350 (397)
                      +|..|..+...++.++.++|.+....++.+|+|+
T Consensus       320 ~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~r~s~  353 (353)
T TIGR03235       320 TGSACSSSKYEPSHVLQAMGLDTDRARGAIRFSW  353 (353)
T ss_pred             chhhcCCCCCCCCHHHHHcCCCHHHhCccEEEeC
Confidence            9999998888888999999999877889999985

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=100.00  E-value=1.3e-44  Score=338.42  Aligned_cols=349  Identities=30%  Similarity=0.457  Sum_probs=300.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++++++|+.|++++.+.+....++|++..+..+....+.++++++.+++++|+++ ++|+|++|+|.|++.++.++.
T Consensus         3 ld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~   82 (371)
T PF00266_consen    3 LDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLL   82 (371)
T ss_dssp             EBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             eeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccc
Confidence            6999999999999999999999988898765677777788999999999999999998 789999999999999999984


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ... ++|++|++++.+|++....+..+. +.|.+++.++.+.++.+|++++++++++++++|++++.+|.+|.+.|+++|
T Consensus        83 ~~~-~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I  161 (371)
T PF00266_consen   83 NPL-KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEI  161 (371)
T ss_dssp             HHG-TTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHH
T ss_pred             ccc-ccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeecee
Confidence            221 788999999999999998888876 569999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC------------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------------  226 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~------------  226 (397)
                      .++||++|+++++|+++++|..++|+..+++|++++|+||++||.|+|+++++++..+++++...++.            
T Consensus       162 ~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~  241 (371)
T PF00266_consen  162 AKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGL  241 (371)
T ss_dssp             HHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCH
T ss_pred             hhhhhccCCceeEechhccccccccccccccceeeecccccCCCCchhhheehhhhhhccccccccccccccccchhccc
Confidence            99999999999999999999999999999999999999998899999999999988777766666554            


Q ss_pred             --ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC-CCCCCCceEEEEecCCC
Q psy8850         227 --HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNFIE  302 (397)
Q Consensus       227 --~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  302 (397)
                        ...+++.||+++..++++..+++++.+ +++++.++..++.+++.+.|.+ ++++.++++ .....+.++.+.+++.+
T Consensus       242 ~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~  320 (371)
T PF00266_consen  242 ADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEE-LPGIEVLGPDDEPRRPSIVSFNLPGSD  320 (371)
T ss_dssp             HSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTEEESSSSCGGBGTTEEEEEETTSS
T ss_pred             ccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhc-CCceeEeeecccccccceEEEeecCCC
Confidence              123567889999999999999999954 7999999999999999999999 999988763 44556788899998888


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT  362 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~  362 (397)
                      ..++...|.  +|.+..|..|..      ..+...+..     +.||+|++.++|.+|||++
T Consensus       321 ~~~~~~~L~~~~I~~~~G~~~~~------~~~~~~~~~-----~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  321 ADDVVKYLEERGIAVSTGSACAG------PSLDILGMG-----GVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             HHHHHHHHHHHTEEEEESTTTCH------HHHHHHHTT-----TEEEEE-GTTSSHHHHHHH
T ss_pred             HHHHHHHHhhcCEEEeccCcccH------HHHHHhCCC-----CEEEEeccCCCCHHHHhhC
Confidence            888888887  899999887762      233333333     8999999999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=100.00  E-value=1.9e-42  Score=324.57  Aligned_cols=352  Identities=30%  Similarity=0.451  Sum_probs=295.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++.+++|+.+++++.+++...+.+|+++.+..+....+...++++.++++++++ ++++++++|+|+|+++++.++.
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~   82 (373)
T cd06453           3 LDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG   82 (373)
T ss_pred             ccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh
Confidence            799999999999999999999887888877566777778889999999999999998 7789999999999999999887


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ... .+|++|++++++|++....+..+. ..|.+++.++.+.++.+|++++++++.+++++|++++++||||.+.|+++|
T Consensus        83 ~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i  161 (373)
T cd06453          83 RAN-KPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEI  161 (373)
T ss_pred             hcC-CCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHH
Confidence            200 178999999999999876665554 449999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc-----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----------  227 (397)
                      +++|+++|++|++|++++.+..++++..+++|++++|+||++++.|+|+++++++....+.+...++..           
T Consensus       162 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  241 (373)
T cd06453         162 GEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTY  241 (373)
T ss_pred             HHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCcccccccccccc
Confidence            999999999999999999888888777778999999999966657899999998877777665443321           


Q ss_pred             ---cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCCh
Q psy8850         228 ---EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEG  303 (397)
Q Consensus       228 ---~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (397)
                         ..++..++++...++++.++++++.+ +++++.++..++++++++.|.+ ++++.+..++... ..++.+.+++.+.
T Consensus       242 ~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~  319 (373)
T cd06453         242 ADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSE-IPGVRVYGDAEDR-AGVVSFNLEGIHP  319 (373)
T ss_pred             CCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCcccc-CCeEEEEECCcCH
Confidence               12355678888899999999998865 6888899999999999999999 8888887543322 5677888877677


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                      .++.+.|.  |+.+..|..|.+      ..++..|.     +++||++++.++|.+|+|+++++|
T Consensus       320 ~~i~~~l~~~gi~i~~g~~~~~------~~~~~~~~-----~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         320 HDVATILDQYGIAVRAGHHCAQ------PLMRRLGV-----PGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             HHHHHHHHHCCEEeccCccchh------HHHHHhCC-----CCeEEEEecCCCCHHHHHHHHhhC
Confidence            88888876  898888876654      34444432     378999999999999999999875

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=100.00  E-value=3.8e-40  Score=309.42  Aligned_cols=352  Identities=32%  Similarity=0.524  Sum_probs=288.0

Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHh
Q psy8850           1 MDYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGA   78 (397)
Q Consensus         1 ~~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l   78 (397)
                      ||+++.+ ++|+.+++++.+.+....+++....+.......+...++++.++++++++. ++|++++|+++++.+++.++
T Consensus         3 ld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~   82 (376)
T TIGR01977         3 FDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGL   82 (376)
T ss_pred             ccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhc
Confidence            6888876 788999999999988754455432333333345788899999999999864 47999999999999999987


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHHHhhC-CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                      .    ++|++|+++.++|+++...+..+... |.+++.++.+.++.+|+++++++++++++++++++++||||.+.|+++
T Consensus        83 ~----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~  158 (376)
T TIGR01977        83 L----KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEE  158 (376)
T ss_pred             c----CCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHH
Confidence            6    78999999999999998777655443 999999998888889999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC----------
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG----------  226 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~----------  226 (397)
                      |.++|+++|+++|+|+++++|..++++...++|++++|+|| ++||.|+|+++++++.  .+.+...++.          
T Consensus       159 i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~--~~~~~~~~~~~~~~~~~~~~  236 (376)
T TIGR01977       159 IGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSALIDQP  236 (376)
T ss_pred             HHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCc--CcCceecCCCcccccccccc
Confidence            99999999999999999999999988888899999999999 6788899999998765  2333322211          


Q ss_pred             --ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC-CCCCceEEEEecCCC
Q psy8850         227 --HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFNFIE  302 (397)
Q Consensus       227 --~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  302 (397)
                        ...+++.++++...++++.++++++.+ +++++.++..++++++.+.|.+ .+++.+..+.. .....++.+.+++.+
T Consensus       237 ~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~  315 (376)
T TIGR01977       237 SELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLRE-INKVKIYGPADPANRVGVVSFTVEGID  315 (376)
T ss_pred             ccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCccccCCeEEEEECCCC
Confidence              113467789999999999999998865 6888999999999999999998 88888886532 223567778887777


Q ss_pred             hHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       303 ~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      ..++...|.   ||.+..|.+|++      .....+|.   ...+.||++++.++|.+||++++++|++
T Consensus       316 ~~~~~~~L~~~~gi~v~~g~~~~~------~~~~~~g~---~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       316 SEEVADILDEKFDIATRTGLHCAP------LAHKTIGT---FATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             HHHHHHHHhccCCEEEEcccccch------HHHHHhCC---CCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence            788888885   789988887765      33333332   2247899999999999999999999975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=100.00  E-value=6.4e-40  Score=309.96  Aligned_cols=354  Identities=21%  Similarity=0.268  Sum_probs=286.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.+++++.+.+.....++.. .+.......+..+++++.+++++|+++++|++++|+++++..++.++..
T Consensus        21 l~~~~~~~~p~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~   99 (397)
T TIGR01976        21 FDNPAGTQIPQSVADAVSAALTRSNANRGG-AYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISR   99 (397)
T ss_pred             ecCCccCCCCHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHh
Confidence            689999999999999999998765555544 3444444567789999999999999877899999999999888776631


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      . .++|++|++++++|+++...+..+ ...|.+++.++.+. ++.+|++++++++++++++|++++++||||.+.|+++|
T Consensus       100 ~-~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i  178 (397)
T TIGR01976       100 R-WGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAI  178 (397)
T ss_pred             c-CCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHH
Confidence            1 168999999999999988776443 44599999999875 68899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccC---CccccccCCC
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG---GHEYGLRSGT  235 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  235 (397)
                      .++|+++|+++++|++|+.+..++++..+++|++++|+||++|+. +|+++++++..+.+.+....+   ....+++.|+
T Consensus       179 ~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt  257 (397)
T TIGR01976       179 TELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPERFELGT  257 (397)
T ss_pred             HHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCCc-eEEEEEcHHHHhhCCCccccCccCCCcchhcCCC
Confidence            999999999999999999887777877788999999999988875 899999987766655433221   2234578899


Q ss_pred             CchhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC-CCCCCceEEEEec
Q psy8850         236 LATHQIVGMGEAFRLARIE---------------MKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN  299 (397)
Q Consensus       236 ~~~~~~~~l~~al~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~  299 (397)
                      ++...++++.++++++.+.               +++..++..++++++++.|++ ++++.+..+. .....+++.+.++
T Consensus       258 ~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~  336 (397)
T TIGR01976       258 PQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSD-LPGVTLYGVARLAARVPTVSFTVH  336 (397)
T ss_pred             CCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCccCCCceEEEEeC
Confidence            9999999999999987541               566778888999999999998 7778887652 1223456677776


Q ss_pred             CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         300 FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       300 ~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                      +.+..++.+.|.  ||.+..+..|.+      ..++.+++..  ..++||||+..++|++|+++++++|
T Consensus       337 ~~~~~~l~~~L~~~gI~v~~~~~~~~------~~~~~~~~~~--~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       337 GLPPQRVVRRLADQGIDAWAGHFYAV------RLLRRLGLND--EGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             CcCHHHHHHHHHHCCeEEEeCccchH------HHHHHhCCCC--CCCeEEEEeeccCCHHHHHHHHHhC
Confidence            666778888886  899998877764      5566777542  2368999999999999999999865

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PLN02724 Molybdenum cofactor sulfurase

Probab=100.00  E-value=4.2e-39  Score=324.96  Aligned_cols=363  Identities=20%  Similarity=0.283  Sum_probs=287.7

Q ss_pred             CCCCCCCCCCH-HHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCChhHHHHHHHHH
Q psy8850           1 MDYSATTPIDP-RVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKG   77 (397)
Q Consensus         1 ~~~~~~~~~~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~i~~~~g~t~a~~~~l~~   77 (397)
                      |||++++++++ .|.+++.+++...++||++ .+..+....+.++++|+.+++++|++++  .|+||+|+|+|+++++.+
T Consensus        38 LD~Aatt~~~~~~V~~~~~~~~~~~~~np~s-~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~  116 (805)
T PLN02724         38 LDHAGATLYSESQLEAALADFSSNVYGNPHS-QSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGET  116 (805)
T ss_pred             EeCCCCCCCCHHHHHHHHHHHHhhccCCCCc-CcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHH
Confidence            79999998665 5666666777777889997 7777777888999999999999999655  489999999999999988


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--------CCCCCCH--HHHHHHh----------cCCc
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--------NNGLITL--SQLEEKI----------CSDT  137 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--------~~~~~d~--~~l~~~i----------~~~~  137 (397)
                      +..   ++|++|+++..+|.+....+..+.+.|+++..++++        ..+.+++  +++++.+          .+++
T Consensus       117 l~~---~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t  193 (805)
T PLN02724        117 FPW---SSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAY  193 (805)
T ss_pred             CCC---CCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCc
Confidence            742   678999999999999886665556669999999886        3444544  6677654          2457


Q ss_pred             eEEEEecccCcccccccHHHHHHHHHhc--------CcEEEEecccccCccccccCcccccEEEeccccccC-CCCceEE
Q psy8850         138 ILVSVMLVNNEIGVIQPILEIGELCRSK--------GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGAL  208 (397)
Q Consensus       138 ~~v~~~~~~~~tG~~~~l~~i~~l~~~~--------gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~g~g~~  208 (397)
                      ++|.+++.+|.||.+.|++.+..+++..        ++++++|++|+.|..++|+..+++|++++|+||++| |.|+|++
T Consensus       194 ~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L  273 (805)
T PLN02724        194 NLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGAL  273 (805)
T ss_pred             ceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEE
Confidence            8999999999999999999775555432        368999999999999999999999999999999666 9999999


Q ss_pred             EEecCCCCccccccccCCc-----------------cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy8850         209 YIRRNPRTRIEAQIHGGGH-----------------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLY  270 (397)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~  270 (397)
                      +++++....+.+...||+.                 ..+|+.||+|+.+++++.++++++.+ +++++.++..++.+++.
T Consensus       274 ~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~  353 (805)
T PLN02724        274 LVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVA  353 (805)
T ss_pred             EEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            9999887777777776632                 34688999999999999999999987 79999999999999999


Q ss_pred             HHHhhhcC------cEEEeCCCC-----CCCCceEEEEecCCCh-----HHHHHHh--CCcEecccCccCCCCCChhhHH
Q psy8850         271 NGLMESIE------EIYINGDMN-----NRIPHNLNISFNFIEG-----ESLLMAI--KDIAVSSGSACTSASLEPSYVL  332 (397)
Q Consensus       271 ~~l~~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~~  332 (397)
                      +.|.+ ++      ++.++++..     .....++.|.+.+.+.     .++...+  .||.++.|.+|.++.+.     
T Consensus       354 ~~L~~-l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~-----  427 (805)
T PLN02724        354 NSLRN-LKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACA-----  427 (805)
T ss_pred             HHHHh-ccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHH-----
Confidence            99998 76      577886531     2235677888776542     2222222  39999999999984221     


Q ss_pred             HhhCCCc---------------------cccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         333 RALGCND---------------------ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       333 ~~~g~~~---------------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..+|...                     ....+++|+|++.++|.+|||+++++|++.....
T Consensus       428 ~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~~  489 (805)
T PLN02724        428 KYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVST  489 (805)
T ss_pred             HHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhcC
Confidence            1222210                     1123889999999999999999999999987444

>TIGR01814 kynureninase kynureninase

Probab=100.00  E-value=1.9e-37  Score=292.94  Aligned_cols=337  Identities=15%  Similarity=0.182  Sum_probs=260.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhh-hHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGW-TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++.+++|+.+.+++.+++..+...+.. .+..+. .......++++ + +++|+++++|+|++|+|+++++++.++.
T Consensus        31 ld~~a~g~~p~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~  107 (406)
T TIGR01814        31 LDGNSLGLMPKAARNALKEELDKWAKIAIR-GHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASFY  107 (406)
T ss_pred             ecCCCcCcCcHHHHHHHHHHHHHHHHhhhc-cCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHhc
Confidence            687888899999999999888764323222 222111 11223333444 5 8999998999999999999999999874


Q ss_pred             hhhccC---CCEEEEcCCCChhhHHHHHH-HhhCCcEE----EEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCc
Q psy8850          80 HFYKKR---GKHIITVQTEHKSVLDSIRK-LENDGFRV----TYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNE  148 (397)
Q Consensus        80 ~~~~~~---g~~vl~~~~~~~s~~~~~~~-~~~~g~~v----~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~  148 (397)
                          ++   +++|++++.+|++....+.. +.+.|.++    +.++.++++.+|++++++.++   ++|++|++++++|.
T Consensus       108 ----~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~  183 (406)
T TIGR01814       108 ----KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYY  183 (406)
T ss_pred             ----CCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccc
Confidence                33   34789999999998887764 34448776    566666677889999998874   78999999999999


Q ss_pred             ccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccC--
Q psy8850         149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG--  225 (397)
Q Consensus       149 tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~--  225 (397)
                      ||.+.|+++|.++||++|+++++|++|++|..++++..+++|++++|+|| ++||+| |+++++++....+.+...++  
T Consensus       184 tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~  262 (406)
T TIGR01814       184 TGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRLAGWWG  262 (406)
T ss_pred             cceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCCCcccC
Confidence            99999999999999999999999999999999999988899999999999 666768 77777665444444433331  


Q ss_pred             --------------CccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhc----CcEEEeCCC
Q psy8850         226 --------------GHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESI----EEIYINGDM  286 (397)
Q Consensus       226 --------------~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~  286 (397)
                                    ....+++.|++|...++++.++++++.+ +++++.++..++.+++++.|++ +    +++.+.++.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~i~~~~  341 (406)
T TIGR01814       263 HARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKA-RCGGPPVLTIITPR  341 (406)
T ss_pred             CCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh-hcCCCCceEEeCCC
Confidence                          1123566899999999999999999855 6899999999999999999988 4    358887753


Q ss_pred             CC-CCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHH
Q psy8850         287 NN-RIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFT  362 (397)
Q Consensus       287 ~~-~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~  362 (397)
                      .. ..+.++.+.++ .+..++.+.|.  +|.+...                       ..+.||+|+ +.++|.+|||++
T Consensus       342 ~~~~r~~~v~~~~~-~~~~~~~~~L~~~gi~v~~~-----------------------~~~~iRiS~~~~~nt~~did~l  397 (406)
T TIGR01814       342 DHAQRGCQLSLTHP-VPGKAVFQALIKRGVIGDKR-----------------------EPSVIRVAPVPLYNTFVDVYDA  397 (406)
T ss_pred             ChhhcCCeEEEEec-CCHHHHHHHHHHCCEEEecc-----------------------CCCeEEEechhccCCHHHHHHH
Confidence            32 23556777777 56778887775  7665321                       126899999 578999999999


Q ss_pred             HHHHHHHH
Q psy8850         363 IKLLKMKV  370 (397)
Q Consensus       363 ~~~l~~~~  370 (397)
                      +++|++++
T Consensus       398 ~~~l~~~~  405 (406)
T TIGR01814       398 VNVLEEIL  405 (406)
T ss_pred             HHHHHHHh
Confidence            99998764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=100.00  E-value=5.9e-36  Score=281.58  Aligned_cols=339  Identities=14%  Similarity=0.142  Sum_probs=271.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~   79 (397)
                      |+++++.+.+++|++++.+...         .| .+....+...++++.+++++|++.+ .+++++|+|++++.++..+.
T Consensus        12 l~~pGP~~~~~~V~~a~~~~~~---------~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~   81 (401)
T PLN02409         12 LFVPGPVNIPERVLRAMNRPNE---------DH-RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL   81 (401)
T ss_pred             eccCCCCCCCHHHHHHhcCCCC---------CC-CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC
Confidence            3456777778888888765432         12 2456678999999999999999753 58899999999999998877


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l  155 (397)
                          ++||+|++++++|++.... ..+.+.|.+++.++.+.++.+|++++++++++    ++++|++++++|+||.+.|+
T Consensus        82 ----~~Gd~Vlv~~~~~~~~~~~-~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~  156 (401)
T PLN02409         82 ----SPGDKVVSFRIGQFSLLWI-DQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDL  156 (401)
T ss_pred             ----CCCCEEEEeCCCchhHHHH-HHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCH
Confidence                7999999999988876532 33445599999999886666899999999986    78999999999999999999


Q ss_pred             HHHHHH--HHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccc-----ccccCC-
Q psy8850         156 LEIGEL--CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA-----QIHGGG-  226 (397)
Q Consensus       156 ~~i~~l--~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~-----~~~~~~-  226 (397)
                      ++|.++  |+++|+++++|++++.|..++++..+++|++++|+|| +++|.|+|+++++++..+.+.+     ...++. 
T Consensus       157 ~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~  236 (401)
T PLN02409        157 AGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWAD  236 (401)
T ss_pred             HHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHH
Confidence            999999  9999999999999999999999988899999999999 7788899999999876655433     111210 


Q ss_pred             -----ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC-CCCCCceEEEEec
Q psy8850         227 -----HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN  299 (397)
Q Consensus       227 -----~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~  299 (397)
                           ....+..++++...++++.++++++.+ +++++.+++.++++++++.|++ + ++.+..+. ..+.+.++++.++
T Consensus       237 ~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~-~-g~~~~~~~~~~~s~~v~~~~~p  314 (401)
T PLN02409        237 YLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEA-W-GLKLCTKKPEWRSDTVTAVVVP  314 (401)
T ss_pred             HHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCChhhcccceEEEeCC
Confidence                 011233568999999999999998765 6999999999999999999988 5 77777643 3344556667665


Q ss_pred             -CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         300 -FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       300 -~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                       +.+..++...+.   ++.+..|...                   ..+..|||+...+++.+++.+++++|.+++.++..
T Consensus       315 ~~~~~~~l~~~l~~~~~i~i~~G~~~-------------------~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g~  375 (401)
T PLN02409        315 EGIDSAEIVKNAWKKYNLSLGLGLNK-------------------VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVGY  375 (401)
T ss_pred             CCCCHHHHHHHHHHhCCEEEEcCCCc-------------------ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence             456677776664   7888877422                   12488999999999999999999999999887653

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=100.00  E-value=1.1e-35  Score=276.93  Aligned_cols=333  Identities=16%  Similarity=0.186  Sum_probs=258.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      -++++.++|+++.+++.+....         + ......+..+++++.+++++|++++ .+++++|+|+|+.+++.++. 
T Consensus         3 ~~~~~~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~-   71 (356)
T cd06451           3 LIPGPSNVPPRVLKAMNRPMLG---------H-RSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL-   71 (356)
T ss_pred             ccCCCcCCCHHHHHHhCCCccC---------C-CCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC-
Confidence            3577778899999998654321         1 1223456788999999999999544 47889999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                         ++|++|+++.++|++... ...+...|.+++.+|.++++.+|++++++.+++ ++++|++++++||+|.+.|+++|.
T Consensus        72 ---~~g~~vl~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~  147 (356)
T cd06451          72 ---EPGDKVLVGVNGVFGDRW-ADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIG  147 (356)
T ss_pred             ---CCCCEEEEecCCchhHHH-HHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHH
Confidence               789999999888877421 122233499999999987788999999999987 899999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccc--ccccCC----------
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA--QIHGGG----------  226 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~--~~~~~~----------  226 (397)
                      ++|+++|+++++|++|++|..++++...++|++++|+|| +++|.|+|+++++++....+..  ...++.          
T Consensus       148 ~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (356)
T cd06451         148 ALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYW  227 (356)
T ss_pred             HHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhh
Confidence            999999999999999998887777777789999999999 6667789999998876554432  111110          


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGE  304 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  304 (397)
                      ....+..++++...+.++.++++++.. +++.+.++..++++++.+.|.+ + ++.+..++....+.++.+.++ +.+..
T Consensus       228 ~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (356)
T cd06451         228 GEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEA-L-GLKLLAKPELRSPTVTAVLVPEGVDGD  305 (356)
T ss_pred             cccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCcccCCCceEEEECCCCCCHH
Confidence            011245667888888899899988754 5888899999999999999998 4 777765433333444455554 34567


Q ss_pred             HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ++.+.|.   ||.+.+|..+.                   .+++||++++.++++++|++++++|++++
T Consensus       306 ~~~~~L~~~~gI~~~~g~~~~-------------------~~~~iRis~~~~~~~e~v~~~~~~l~~~~  355 (356)
T cd06451         306 EVVRRLMKRYNIEIAGGLGPT-------------------AGKVFRIGHMGEATREDVLGVLSALEEAL  355 (356)
T ss_pred             HHHHHHHHhCCEEEecccccc-------------------cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            7877775   78888764322                   13799999999999999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=100.00  E-value=8.2e-35  Score=271.62  Aligned_cols=330  Identities=15%  Similarity=0.152  Sum_probs=249.1

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      +|.|..+.+++.+++...+.      + .+..+.+..+++++.+++++|++++  .|++|+|+|+|++.++.++.    .
T Consensus         8 ~pgp~~~~~~v~~~~~~~~~------~-~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~----~   76 (363)
T TIGR02326         8 TPGPLTTSRTVKEAMLFDWC------T-WDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV----P   76 (363)
T ss_pred             cCCCCCCCHHHHHHhCCCCC------C-CChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC----C
Confidence            34555555666655544332      1 1235677889999999999999764  69999999999999999987    5


Q ss_pred             CCCEEEE-cCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC--CceEEEEecccCcccccccHHHHHHH
Q psy8850          85 RGKHIIT-VQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGEL  161 (397)
Q Consensus        85 ~g~~vl~-~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--~~~~v~~~~~~~~tG~~~~l~~i~~l  161 (397)
                      +++++++ .+.+|+....  ..+...|.+++.++.+.++.+|++++++++++  +++++++++++|+||.+.|+++|.++
T Consensus        77 ~~~~vlv~~~~~~~~~~~--~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l  154 (363)
T TIGR02326        77 KDGKLLVVINGAYGARIV--QIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKL  154 (363)
T ss_pred             CCCeEEEEeCChhhHHHH--HHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHH
Confidence            6666544 5555544321  22234499999999988888999999999875  45788999999999999999999999


Q ss_pred             HHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC-----------ccc
Q psy8850         162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG-----------HEY  229 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~-----------~~~  229 (397)
                      ||+||+++++|+++++|..++++..+++|++++|+|| ++||.|+|+++++++..+.+.+...+..           ...
T Consensus       155 ~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (363)
T TIGR02326       155 AHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNH  234 (363)
T ss_pred             HHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccC
Confidence            9999999999999999998999888899999999999 7788899999999876554332111100           001


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CChH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGE  304 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  304 (397)
                      +....+++...+.++.++++.+.+  +++++.+++.++++++++.|++ + ++.+..++....+..+++.++.   .+..
T Consensus       235 ~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (363)
T TIGR02326       235 GKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRA-L-GFEPLLDDEIQSPIITSFYSPEDPDYRFA  312 (363)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCcccCCceEEEEECCCCCCCCHH
Confidence            112235678889999999987744  3788999999999999999988 4 6666654433444556677764   3556


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ++.+.|.  ||.+.+|..+.                    .+.|||++..+++.+++++++++|++++.
T Consensus       313 ~v~~~L~~~gi~v~~g~~~~--------------------~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       313 DFYQRLKEQGFVIYPGKVSQ--------------------VDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             HHHHHHHHCCEEEECCcCCC--------------------CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            7777776  89988774321                    27899998667899999999999998753

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=100.00  E-value=7.2e-33  Score=259.16  Aligned_cols=345  Identities=14%  Similarity=0.106  Sum_probs=256.0

Q ss_pred             CCCCC--------CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-C-CcEE--EeCChh
Q psy8850           1 MDYSA--------TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-P-REII--WTSGAT   68 (397)
Q Consensus         1 ~~~~~--------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-~~i~--~~~g~t   68 (397)
                      +|+++        ++++.+++.+.+.+.+...++||++ .   +.. .+.++++++++++++|++ + +++.  +|+|||
T Consensus        37 ld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np~s-~---~~~-~~le~~~~~~la~llg~~~~~~~~~g~~TsGgT  111 (431)
T TIGR01788        37 LDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDE-Y---PQT-AEIENRCVNMLADLWHAPAKDAEAVGTSTIGSS  111 (431)
T ss_pred             hcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCccc-C---ccH-HHHHHHHHHHHHHHhCCCCCCCCCeEEEechHH
Confidence            47788        8898999999999999876777765 2   223 378999999999999998 3 4544  489999


Q ss_pred             HHHHHHHHHhHhhhc----c-----CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCce
Q psy8850          69 ESNNLAIKGAAHFYK----K-----RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTI  138 (397)
Q Consensus        69 ~a~~~~l~~l~~~~~----~-----~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~  138 (397)
                      +|+.+++.++...+.    .     .+.+|++++.+|++...+...+   |++++.+|++++ +.+|+++|+++++++|.
T Consensus       112 EAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~l---g~~v~~i~~d~~~~~vd~~~L~~~i~~~t~  188 (431)
T TIGR01788       112 EAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYF---DVELREVPMDPGRYVIDPEQVVEAVDENTI  188 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHc---CceeEEEecCCCceeeCHHHHHHHHhhCCe
Confidence            999999877642210    1     1248999999999999888877   899999999875 58999999999999999


Q ss_pred             EEEEecccCcccccccHHHHHHHHHhc------CcEEEEecccccC-------ccccccCcccccEEEeccccc-cCCCC
Q psy8850         139 LVSVMLVNNEIGVIQPILEIGELCRSK------GVIFHCDAAQAVG-------KIDINIQNYKVDLMSFSAHKI-YGPKG  204 (397)
Q Consensus       139 ~v~~~~~~~~tG~~~~l~~i~~l~~~~------gi~livD~a~~~~-------~~~~~~~~~~~d~~~~s~~K~-~g~~g  204 (397)
                      +|++++.+|.+|.+.|+++|+++|+++      |+++|+|++|+.+       ..+.++...++|++++|+||+ +||.|
T Consensus       189 lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g  268 (431)
T TIGR01788       189 GVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG  268 (431)
T ss_pred             EEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCC
Confidence            999999999999999999999999999      9999999999943       344555555789999999994 59999


Q ss_pred             ceEEEEecC--CCCccc--cccccCCc-cccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy8850         205 IGALYIRRN--PRTRIE--AQIHGGGH-EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIE  278 (397)
Q Consensus       205 ~g~~~~~~~--~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~  278 (397)
                      +|+++++++  ....+.  +...++.. ..... ++.+....++++..+..+ ..++.++.++..++++++.+.|++ .+
T Consensus       269 ~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~-~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~-~~  346 (431)
T TIGR01788       269 VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLN-FSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAK-LG  346 (431)
T ss_pred             cEEEEEeChHHcchhheecccccCCCCCCccee-cCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh-CC
Confidence            999999875  112111  11122211 11111 222222334444554444 458999999999999999999999 88


Q ss_pred             cEEEeCCCCCCCCceEEEEecC-----CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC
Q psy8850         279 EIYINGDMNNRIPHNLNISFNF-----IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG  351 (397)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~  351 (397)
                      ++.++.+..  ...+++|.+++     .+..++.+.|.  |+.+..-  -.|.           +   -.+..++|+++.
T Consensus       347 ~~el~~~~~--~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~--~~p~-----------~---~~~~~~lR~~~~  408 (431)
T TIGR01788       347 PFEIISDGS--GIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAY--TLPK-----------N---AEDIVVMRIVVR  408 (431)
T ss_pred             CEEEeeCCC--CceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCC--CCCC-----------c---cCCeEEEEEEec
Confidence            899887521  25677777763     44567777776  5433211  0110           0   012356999998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q psy8850         352 RFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       352 ~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ...+.+.++++++.|++++..+
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       409 EGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Confidence            8889999999999999998764

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=100.00  E-value=2.3e-33  Score=262.48  Aligned_cols=308  Identities=15%  Similarity=0.144  Sum_probs=239.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCC--CcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEe
Q psy8850          39 AEKAIEKARNEVAQLIYADP--REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL  116 (397)
Q Consensus        39 ~~~~~~~~~~~la~~~~~~~--~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v  116 (397)
                      ..+...++++.+++++|+++  +.+.+++|+|+++..++.++.    .++++|++..+.+++... ...+...|.+++.+
T Consensus        35 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~----~~~~~vlv~~~~~~~~~~-~~~~~~~g~~~~~i  109 (368)
T PRK13479         35 FNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV----PRDGKVLVPDNGAYGARI-AQIAEYLGIAHVVL  109 (368)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc----CCCCeEEEEeCCchHHHH-HHHHHHcCCcEEEE
Confidence            44688999999999999965  358899999999999999987    677888887665555431 23334449999999


Q ss_pred             ccCCCCCCCHHHHHHHhcC--CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEe
Q psy8850         117 KPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF  194 (397)
Q Consensus       117 ~~~~~~~~d~~~l~~~i~~--~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~  194 (397)
                      +.++++.+|++++++++++  ++++|++++++|+||.+.|+++|.++|+++|+++++|+++++|..++++..+++|++++
T Consensus       110 ~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~  189 (368)
T PRK13479        110 DTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALIS  189 (368)
T ss_pred             ECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEe
Confidence            9987778999999999875  45689999999999999999999999999999999999999998888888888999999


Q ss_pred             cccc-ccCCCCceEEEEecCCCCccccccccCCcc----------ccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHH
Q psy8850         195 SAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHE----------YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKR  261 (397)
Q Consensus       195 s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~  261 (397)
                      |+|| ++|+.|+|+++++++..+.+......+...          .+....+++...++++.++++.+.+  ++++..++
T Consensus       190 s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~  269 (368)
T PRK13479        190 SANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGAR  269 (368)
T ss_pred             cCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            9999 788889999999987655543322110000          0111236788888999999997744  37888899


Q ss_pred             HHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhC
Q psy8850         262 ILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALG  336 (397)
Q Consensus       262 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g  336 (397)
                      +.++++++++.|++ + ++.+..++....+.++.+.++.   .+..++.+.|.  ||.+.+|..+.              
T Consensus       270 ~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~--------------  333 (368)
T PRK13479        270 YANNQRTLVAGMRA-L-GFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQ--------------  333 (368)
T ss_pred             HHHHHHHHHHHHHH-c-CCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCC--------------
Confidence            99999999999998 4 6666544332334556666653   34567777776  89887763221              


Q ss_pred             CCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         337 CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       337 ~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                            .+.+|+++..+++.+|+++++++|+++++++
T Consensus       334 ------~~~iRis~~~~~t~edi~~~l~~L~~~l~~~  364 (368)
T PRK13479        334 ------VDTFRIGCIGDVDAADIRRLVAAIAEALYWM  364 (368)
T ss_pred             ------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence                  2689999766789999999999999998754

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-33  Score=250.35  Aligned_cols=336  Identities=16%  Similarity=0.212  Sum_probs=275.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      .++.+.+++|+.+|.....          +..+..+.....++.+.++..++.+. +-++++++||.|++.++.+++   
T Consensus        11 PGP~~v~~~V~~am~~~~~----------~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~---   77 (383)
T COG0075          11 PGPVPVPPRVLLAMARPMV----------GHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV---   77 (383)
T ss_pred             CCCCCCCHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc---
Confidence            4566778888888766442          23456778899999999999999984 457778999999999999999   


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC--CceEEEEecccCcccccccHHHHHH
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                       +|||+|++.....++...+ +.++++|.+++.+..+..-.+|++++++++++  +.++|.++|..++||.+.|+++|++
T Consensus        78 -~pgdkVLv~~nG~FG~R~~-~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~  155 (383)
T COG0075          78 -EPGDKVLVVVNGKFGERFA-EIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAK  155 (383)
T ss_pred             -CCCCeEEEEeCChHHHHHH-HHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHH
Confidence             8999999887766665432 44566699999999998888999999999984  5789999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc-----cccC------Ccc
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-----IHGG------GHE  228 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~-----~~~~------~~~  228 (397)
                      +|++||+++|||++.++|..++++.+|++|+++.+.+| +.+|+|+|++.++++..+.+...     +.+.      ...
T Consensus       156 ~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~  235 (383)
T COG0075         156 AAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEK  235 (383)
T ss_pred             HHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhh
Confidence            99999999999999999999999999999999999999 78899999999998876655322     1110      001


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESL  306 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  306 (397)
                      .+..+.|+++..++++..+++.+.+ |++++.++++++++++++++++  .|+.++.++....+.+..+..+. .+..++
T Consensus       236 ~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~a--lGl~~~~~~~~~s~tvta~~~P~g~~~~~~  313 (383)
T COG0075         236 KGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEA--LGLELFADPERRSPTVTAIKVPEGVDDKKV  313 (383)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCccccCcccCCCceEEEECCCCCCcHHH
Confidence            1456779999999999999998855 7999999999999999999999  68888886666777888888774 344444


Q ss_pred             HHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         307 LMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       307 ~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ...+.   ++.+.+|.                   .+..+..+||+.-.+.+..++..++.+|..++.++..
T Consensus       314 ~~~~~~~~g~~i~gg~-------------------~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~  366 (383)
T COG0075         314 RRALLKEYGVEIAGGQ-------------------GPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGV  366 (383)
T ss_pred             HHHHHHhCCEEecccc-------------------cccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence            44443   67776653                   3344689999988789999999999999999998865

>PRK02769 histidine decarboxylase; Provisional

Probab=100.00  E-value=1.1e-32  Score=254.77  Aligned_cols=321  Identities=20%  Similarity=0.216  Sum_probs=250.4

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      +....+.+........+||.+ .+..+....+...++++++++++|+++++  ..+|+|||+++..++.+....  .+++
T Consensus        35 ~~~~~~~~~~~~~~n~gnp~~-~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~--~~~~  111 (380)
T PRK02769         35 DYSALKRFFSFSINNCGDPYS-KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL--FPDG  111 (380)
T ss_pred             CHHHHHHHHHhhhccCCCccc-cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh--CCCc
Confidence            345566666666566788877 77767677889999999999999997655  589999999988776654322  4578


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC---ceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD---TILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      +|++++.+|+|...++..+   |.+...|+.+++|.+|+++|+++++++   |.+|++++++|++|.+.|+++|.++|++
T Consensus       112 ~ii~s~~~H~Sv~ka~~~l---g~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~  188 (380)
T PRK02769        112 TLYYSKDTHYSVSKIARLL---RIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKK  188 (380)
T ss_pred             EEEeCCCceehHHHHHHHc---CCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHH
Confidence            9999999999999998888   777778888888999999999999876   9999999999999999999999999999


Q ss_pred             cC---cEEEEecccccCccc-------cccCcccccEEEeccccccC-CCCceEEEEecCCCCccccccccCCccccccC
Q psy8850         165 KG---VIFHCDAAQAVGKID-------INIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS  233 (397)
Q Consensus       165 ~g---i~livD~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (397)
                      ||   +++++|++++.+..+       +++.. ++|++++|+||+++ |.|+|+++++++....+.+.............
T Consensus       189 ~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~  267 (380)
T PRK02769        189 IGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTIS  267 (380)
T ss_pred             hCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCcc
Confidence            98   699999999988774       56655 89999999999654 99999999998765544321110011112346


Q ss_pred             CCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCC
Q psy8850         234 GTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKD  312 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  312 (397)
                      |+.+...+++++++++.+ .+++.++.+++.++++++.+.|++  .++.++.++.     ...+.|+..+ .++.   ++
T Consensus       268 GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~--~g~~~~~~p~-----~~~v~f~~~~-~~~~---~~  336 (380)
T PRK02769        268 GSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA--NGIPAWRNPN-----SITVVFPCPS-ERIW---KK  336 (380)
T ss_pred             CCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEcCCC-----ceEEEEcCCC-HHHH---hC
Confidence            788888889999999987 457999999999999999999988  5777776643     3345555332 2322   22


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      -.+..-                        +..+|+++...++.+.+|.+++.|.+....
T Consensus       337 w~l~~~------------------------~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~  372 (380)
T PRK02769        337 WHLATS------------------------GNQAHIITMPHHNKQQIDSLIDELIFDLKN  372 (380)
T ss_pred             eeEccc------------------------CCEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence            222110                        257999999989999999999999887653

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=100.00  E-value=1.9e-33  Score=268.06  Aligned_cols=353  Identities=19%  Similarity=0.214  Sum_probs=267.8

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEe---CChhHHHHHHHHH
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREIIWT---SGATESNNLAIKG   77 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~i~~~---~g~t~a~~~~l~~   77 (397)
                      ++...+++.+++++...+...+  ++|.+ .|..+....+.+++ +++.++++++++++++.++   +||++|+.+++.+
T Consensus        41 ~sen~~s~~v~~~~~~~l~~~y~~g~p~s-~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~a  119 (452)
T PTZ00094         41 ASENFTSRAVLECLGSCFTNKYAEGLPGN-RYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTA  119 (452)
T ss_pred             cccccCCHHHHHHhcchhhccccCCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHH
Confidence            5666789999999999998877  89988 77777777777774 8999999999987777677   7999999999999


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHHhh-------CCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcc
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-------DGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEI  149 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-------~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t  149 (397)
                      +.    ++||+|++++.+|+++...+..+.+       .++++..++.+.+|.+|++++++++++ +++++++.  ++.+
T Consensus       120 l~----~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~~  193 (452)
T PTZ00094        120 LL----QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASAY  193 (452)
T ss_pred             hc----CCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCCC
Confidence            86    7899999999999998776543221       124455666777799999999999964 67777664  3459


Q ss_pred             cccccHHHHHHHHHhcCcEEEEecccccCccccccCc---ccccEEEecccc-ccCCCCceEEEEecCCCCccccccccC
Q psy8850         150 GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQN---YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       150 G~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~---~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      |...|+++|.++||++|+++++|++|++|..+.+...   .++|++++|+|| ++||.| |+++++++....+.......
T Consensus       194 g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~~~~~~  272 (452)
T PTZ00094        194 PRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIENKINEA  272 (452)
T ss_pred             CCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEecccchHHHHhhccc
Confidence            9999999999999999999999999999988654322   268999999999 778987 88888865543332211111


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChH
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE  304 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (397)
                      .. ..+ .|+++...++++.++++++. .+.+++.+++.+++++|.+.|.+  .++.+..+........+.+..++.+..
T Consensus       273 ~~-p~~-~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~--~g~~v~~~~~~~~~~~v~~~~~~~~~~  348 (452)
T PTZ00094        273 VF-PGL-QGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEK--RGYDLVTGGTDNHLVLVDLRPFGITGS  348 (452)
T ss_pred             cC-CCC-CCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh--CCcEEecCCCCCceEeecCCcCCCCHH
Confidence            01 112 36788889999999999885 46788899999999999999988  477776532212123334444456677


Q ss_pred             HHHHHhC--CcEec-ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC----HHHHHHHHHHHHHHHHHHHhcC
Q psy8850         305 SLLMAIK--DIAVS-SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT----EKEIDFTIKLLKMKVKKLRELS  377 (397)
Q Consensus       305 ~~~~~l~--~i~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~----~~~i~~~~~~l~~~~~~~~~~~  377 (397)
                      .+...|.  ||.+. .+..+.+               .....+.||++++.+++    ++||+++++.|.+++.......
T Consensus       349 ~~~~~L~~~gI~vs~~~~p~~~---------------~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~~~~~  413 (452)
T PTZ00094        349 KMEKLLDAVNISVNKNTIPGDK---------------SALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEIQ  413 (452)
T ss_pred             HHHHHHHHCCcEEecccCCCCC---------------cCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence            7777775  88884 4433322               11123789999987766    9999999999999999888878


Q ss_pred             ccchhh
Q psy8850         378 PLWDMH  383 (397)
Q Consensus       378 ~~~~~~  383 (397)
                      ++++++
T Consensus       414 ~~~~~~  419 (452)
T PTZ00094        414 KQVGKK  419 (452)
T ss_pred             hhcccc
Confidence            777443

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-33  Score=262.81  Aligned_cols=326  Identities=17%  Similarity=0.133  Sum_probs=241.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCc-EEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPRE-IIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~-i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.+++++.+++..-. .    .|.......+..+.+.+.+.+.+|  .++++ |++|+|+++|+..++.+++    +
T Consensus        41 ~~p~~i~~a~~~a~~~~~-~----~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~----~  111 (393)
T COG0436          41 PTPEHIIEAAIEALEEGG-T----HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL----N  111 (393)
T ss_pred             CCCHHHHHHHHHHHhccc-C----CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc----C
Confidence            568889999999887521 0    011122223344444444445545  34445 9999999999999999999    8


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC---CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI  158 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~---~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i  158 (397)
                      +||+|++++|.|+++...+..+   |.+++.++++   .++.+|+++|+++++++|++|++.+|+||||.+++   +++|
T Consensus       112 pGDeVlip~P~Y~~y~~~~~~~---gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i  188 (393)
T COG0436         112 PGDEVLIPDPGYPSYEAAVKLA---GGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAI  188 (393)
T ss_pred             CCCEEEEeCCCCcCHHHHHHhc---CCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHH
Confidence            9999999999999999999988   9999999975   36899999999999999999999999999999998   6789


Q ss_pred             HHHHHhcCcEEEEecccccCc----cccccCc----ccccEEEeccccccCCCC--ceEEEEe-cCCCCccccccccCCc
Q psy8850         159 GELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGH  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~  227 (397)
                      +++|++||++||.|++|..-.    .+..+..    ....+.+.|+||.++..|  +||++++ +++.+.+....     
T Consensus       189 ~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~-----  263 (393)
T COG0436         189 VELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLK-----  263 (393)
T ss_pred             HHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHH-----
Confidence            999999999999999997211    1111111    134677889999766656  8999988 44444433111     


Q ss_pred             cccccCCCCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE  304 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  304 (397)
                        .....+++.....+..++|+..  ...++..++.++++++.+.+.|.+ ++++.+..++..  ...++..++. .++.
T Consensus       264 --~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~-~~g~~~~~~p~G--a~Y~~~~i~~~~d~~  338 (393)
T COG0436         264 --SYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNE-IGGLSVVKPPEG--AFYLFPKIPELLDSE  338 (393)
T ss_pred             --HhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHh-cCCeeeccCCCe--eEEEEeecCCCCCHH
Confidence              1112244455555555778755  235666778999999999999999 888888875442  2334455554 5778


Q ss_pred             HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ++...|.   +|.+.||..|..                ..+.++||+++..  +.+++++++++|.++++..
T Consensus       339 ~f~~~Ll~~~gV~v~PG~~Fg~----------------~~g~~~vRis~~~--~~~~l~~a~~rl~~~~~~~  392 (393)
T COG0436         339 EFAKKLLEEAGVAVVPGSGFGE----------------PPGEGYVRLSLAT--SEETLEEALRRLARFLAEY  392 (393)
T ss_pred             HHHHHHHHhCCEEEecccccCC----------------CCCCCeEEEEEec--CHHHHHHHHHHHHHHHHhc
Confidence            8888876   899999987765                1234899999986  5699999999999988764

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=100.00  E-value=8.4e-33  Score=257.80  Aligned_cols=326  Identities=17%  Similarity=0.193  Sum_probs=243.4

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCChhHHHHHHHHHhHhh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      .+++.+++.+++++....          .+. .....+..+.+++.+++++|++++  .|++++|+|+++..++.++.  
T Consensus         5 p~p~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~--   71 (355)
T TIGR03301         5 PGPLSTSATVRDAMLVDW----------CHW-DSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV--   71 (355)
T ss_pred             CCCCCCCHHHHHHhhhhc----------cCC-CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--
Confidence            345556677777776622          111 122347889999999999999765  57889999999999999987  


Q ss_pred             hccCCCEEE-EcCCCChhh-HHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC--CceEEEEecccCcccccccHHH
Q psy8850          82 YKKRGKHII-TVQTEHKSV-LDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        82 ~~~~g~~vl-~~~~~~~s~-~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                        .++++++ +.++.|+.. ......   .|.+++.++.+.++.+|++++++.+++  +++++++++++|++|.+.|+++
T Consensus        72 --~~~~~vi~~~~~~~~~~~~~~a~~---~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~  146 (355)
T TIGR03301        72 --PRDGKLLVLINGAYGERLAKICEY---LGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEA  146 (355)
T ss_pred             --CCCCeEEEECCCchhhHHHHHHHH---cCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHH
Confidence              5666655 444545442 222233   399999999887788999999999975  4568888999999999999999


Q ss_pred             HHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC----------
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG----------  226 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~----------  226 (397)
                      |.++|++||+++|+|+++++|..++++..+++|++++|+|| ++|+.|+|+++++++..+.+........          
T Consensus       147 i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (355)
T TIGR03301       147 IAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYM  226 (355)
T ss_pred             HHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHh
Confidence            99999999999999999998888888777789999999999 6788899999999876555431111000          


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---C
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARI-E-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---I  301 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  301 (397)
                      ...+....+++...+.++.++++.+.+ + +++..++++++++++++.|++ + ++.+..++....+.++++.++.   .
T Consensus       227 ~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~  304 (355)
T TIGR03301       227 EKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRA-L-GFQPLLPERWQSPIIVSFLYPDDPDF  304 (355)
T ss_pred             hhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH-c-CCeeecCCCCCCCcEEEEECCCCCcc
Confidence            000122346788888888899987754 4 888899999999999999988 4 6665544332333445666654   3


Q ss_pred             ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +..++.+.|.  |+.+.+|..+.                    .++|||++..+++.++++++++.|+++
T Consensus       305 ~~~~~~~~l~~~gi~i~~~~~~~--------------------~~~iRis~~~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       305 DFDDFYQELKERGFVIYPGKLTL--------------------ADTFRIGTIGEIDAADIERLLEAIKDA  354 (355)
T ss_pred             hHHHHHHHHHHCCEEEECCcccc--------------------ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            4457777776  88887763211                    168999998889999999999999875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=100.00  E-value=3.7e-34  Score=265.03  Aligned_cols=332  Identities=15%  Similarity=0.118  Sum_probs=242.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchh---hhHHHHHHHHHHHHHHHhCC-CCCcEEEeCC-hhHHHHHHHHH
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG---WTAEKAIEKARNEVAQLIYA-DPREIIWTSG-ATESNNLAIKG   77 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g-~t~a~~~~l~~   77 (397)
                      ++++++.|+.|++++.+.+.... +++++.+..+   ..+.+.+.++|+.+++++++ ++++++|++| +|+|+++++.+
T Consensus         4 ~pGp~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~   82 (355)
T cd00611           4 SAGPAALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLN   82 (355)
T ss_pred             CCCCCCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHh
Confidence            57888899999999999987744 7777666666   46668999999999999998 4567999877 99999999999


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCC-C-HHHHHHHhcCCceEEEEecccCcccccccH
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI-T-LSQLEEKICSDTILVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~-d-~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l  155 (397)
                      +... .+++++|++....+.+    ...+++.|.+++.++.+++|.. + ++..+..+++++++|+++|.+|.||...+ 
T Consensus        83 l~~~-~~~~~~i~~g~~~~~~----~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-  156 (355)
T cd00611          83 LLGD-KGTADYVVTGAWSAKA----AKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-  156 (355)
T ss_pred             cCCC-CCeEEEEECCHHHHHH----HHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-
Confidence            8621 1256666654332222    3344555999999988755433 4 34444556788999999999999999743 


Q ss_pred             HHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC---c--ccc
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG---H--EYG  230 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~---~--~~~  230 (397)
                          ++++.||+++++|+++++|..++|+..++  +.+.|.||++||+|+|+++++++..+++.+......   .  ...
T Consensus       157 ----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (355)
T cd00611         157 ----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNN  230 (355)
T ss_pred             ----eecccCCCeEEEEccccccCCCCCHHHhC--EEEeecccccCCCceEEEEECHHHHhhcccCCCCcccHHHHHhcC
Confidence                45566999999999999999999998655  555779998899999999999987766554322111   0  111


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEE-EeCCCCCCCCceEEEEecCCC-hHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPHNLNISFNFIE-GESL  306 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~  306 (397)
                      ...+|+|+..++++.++++++.+  +++++.++..++++++++.|++ ++++. ...++..+.+.++.|.+++.. ..++
T Consensus       231 ~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~-~~gl~~~~~~~~~rs~~vvsf~~~~~~l~~~~  309 (355)
T cd00611         231 SLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN-SNGFYRGPVDKRARSRMNVPFRLGKEELEKEF  309 (355)
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CccccccCCCHHHcCceEEEEEcCChhhhHHH
Confidence            23689999999999999999865  5999999999999999999999 87752 111112233345666666530 1222


Q ss_pred             HHHh--CCcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         307 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       307 ~~~l--~~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ...+  .|++...+..                     ..+.+|+|+..++|.+|||+++++|+++
T Consensus       310 ~~~~~r~G~~~~~~~~---------------------~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         310 LKEAEAAGMIGLKGHR---------------------SVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             HHHHHHCCCcccCCCc---------------------ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            2222  1544322210                     1268999999999999999999999884

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=100.00  E-value=1.6e-32  Score=257.54  Aligned_cols=331  Identities=17%  Similarity=0.165  Sum_probs=245.1

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+|+++++++++.++... +++|.+..+..+....+.+.++++.+++++|++  ++.+++|+++|+.+++.++.    ++
T Consensus        29 ~~p~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~--~~~~~~g~t~a~~~al~~l~----~~  101 (387)
T PRK09331         29 GGILTPEARKALIEYGDG-YSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD--EARVTHGAREGKFAVMHSLC----KK  101 (387)
T ss_pred             CCCCCHHHHHHHHHHHhc-cCCCcccccccccccChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc----CC
Confidence            468899999999999854 455543234444555667999999999999986  57889999999999999987    79


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc--CCCCCCCHHHHHHHhcC-------CceEEEEecccCcccccccHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKICS-------DTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~--~~~~~~d~~~l~~~i~~-------~~~~v~~~~~~~~tG~~~~l~  156 (397)
                      |++|+++.++|.+...++...   |.+++.++.  ++++.+|++++++++++       ++++|++++++|++|.+.|++
T Consensus       102 gd~Vlv~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~  178 (387)
T PRK09331        102 GDYVVLDGLAHYTSYVAAERA---GLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAK  178 (387)
T ss_pred             CCEEEECCCchHHHHHHHHHc---CCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHH
Confidence            999999999999998776555   999999998  66788999999999863       689999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc-cccccCC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-EYGLRSG  234 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  234 (397)
                      +|+++|++||+++++|++|+.|..+++...+++|++++|+|| ++++.|+|+++++++....+......... ...+..+
T Consensus       179 ~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  258 (387)
T PRK09331        179 KVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGC  258 (387)
T ss_pred             HHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeeece
Confidence            999999999999999999999988888888889999999999 66677899999988765554332211100 0001112


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC---------ChHH
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGES  305 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  305 (397)
                      +......+++.++++.+.+... ..++..++.+++++.|.+ ++++.+..+.. ....++.+..+..         +...
T Consensus       259 ~~~~~~~~~~~aal~~~~~~~~-~~~~~~~~~~~l~~~L~~-l~g~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~  335 (387)
T PRK09331        259 TLRGAPLVTLMASFPHVVERVK-RWDEEVKKARWFVDELEK-IEGFKQLGEKP-RNHDLMKFETPSFDEIAKKHKRRGFF  335 (387)
T ss_pred             ecCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CCCEEEeccCc-CcCCeEEEeCCchhHHhhhccccchh
Confidence            2333344555566666554433 455567788899999999 88998885321 2244544554422         1234


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.+.|.  ||.....                      .....+|+.... ++.+|+++++++|++++++
T Consensus       336 ~~~~L~~~gI~~~~~----------------------~~~~i~ri~~~g-~t~~di~~l~~aL~~i~~~  381 (387)
T PRK09331        336 LYEELKKRGIHGIKP----------------------GATKEFKLSTYG-LTWEQVEYVADAFKEIAEK  381 (387)
T ss_pred             HHHHHHHcCceEEcc----------------------CCceEEEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence            666665  5542110                      012556776643 6899999999999988765

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=100.00  E-value=3.1e-33  Score=260.93  Aligned_cols=328  Identities=13%  Similarity=0.097  Sum_probs=244.7

Q ss_pred             CCCCCCHH-HHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeC-ChhHHHHHHHHHhHhh
Q psy8850           5 ATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTS-GATESNNLAIKGAAHF   81 (397)
Q Consensus         5 ~~~~~~~~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~-g~t~a~~~~l~~l~~~   81 (397)
                      +++.+++. |++++.+....   ..++     +..+.+.++++++.++++++++. ++|+|+. |+|.++++++.++.  
T Consensus        19 Gp~~~~~~~v~~a~~~~~~~---~~hr-----~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~--   88 (378)
T PRK03080         19 GPCKKRPGWQLEALADALLG---RSHR-----QKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLL--   88 (378)
T ss_pred             CCcCCChHHHHHHHHhhhcc---cCcC-----CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcC--
Confidence            44444555 99999865432   2222     34678899999999999999853 4688875 99999999999986  


Q ss_pred             hccC-CCEEEEcCCCChhhHHHHHHHhhCCc-EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHH
Q psy8850          82 YKKR-GKHIITVQTEHKSVLDSIRKLENDGF-RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        82 ~~~~-g~~vl~~~~~~~s~~~~~~~~~~~g~-~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                        ++ ++.|++ ..+|++.... ....+.|. +++.++.+.++.+|+++++    . ++.|+++|.+|.||.+.|+++|+
T Consensus        89 --~~~~~~vi~-~g~f~~~~~~-~~~~~~g~~~v~~~~~~~g~~~d~~~i~----~-~~~V~~~h~~t~tG~~~pi~~I~  159 (378)
T PRK03080         89 --GARRVDHLA-WESFGSKWAT-DVVKQLKLEDPRVLEADYGSLPDLSAVD----F-DRDVVFTWNGTTTGVRVPVARWI  159 (378)
T ss_pred             --CCCcceEEE-eCHHHHHHHH-HHHhhcCCCCceEeccCCCCCCCHhhcC----C-CCCEEEEecCCccceeccchhhc
Confidence              43 445554 5777774332 11134488 9999988877778877643    2 66799999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC------------
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG------------  226 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~------------  226 (397)
                      +  |++|+++++|++|++|..++|+..  +|++++|.|| ++||+|+|+++++++..+.+.+...++.            
T Consensus       160 ~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~  235 (378)
T PRK03080        160 G--ADREGLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGK  235 (378)
T ss_pred             c--ccCCCeEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCchhheeccchH
Confidence            9  889999999999999999999985  7999999999 6788999999999987776655433221            


Q ss_pred             -cccccc---CCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC-CCCCCCceEEEEec
Q psy8850         227 -HEYGLR---SGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFN  299 (397)
Q Consensus       227 -~~~~~~---~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~  299 (397)
                       ....+.   .++++...+.++.++++++.+  +++++.++..++.+++++.|++ ++++.+... +..+.+.++.+.++
T Consensus       236 ~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~i~~~~~~  314 (378)
T PRK03080        236 AIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEK-TPWATPLVADPATRSNTSVTLDFV  314 (378)
T ss_pred             HhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCCcccccCCccccCccEEEEEcC
Confidence             011222   355677778888999999976  5899999999999999999998 776666642 22233456677766


Q ss_pred             C---CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         300 F---IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       300 ~---~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +   ....++...+.  ++.+..|.++.                   ..+.+|+|+..+++.+||++++++|++++++++
T Consensus       315 ~~~~~~~~~~~~~l~~~~i~v~~g~~~~-------------------~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~  375 (378)
T PRK03080        315 DAQAAVDAAAVAKLLRENGAVDIEPYRD-------------------APNGLRIWCGPTVEPADVEALTPWLDWAFERLK  375 (378)
T ss_pred             CchHHHHHHHHHHHHHcCCeeccccccC-------------------CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            5   12234444443  77776653221                   137899999999999999999999999988776


Q ss_pred             h
Q psy8850         375 E  375 (397)
Q Consensus       375 ~  375 (397)
                      .
T Consensus       376 ~  376 (378)
T PRK03080        376 A  376 (378)
T ss_pred             h
Confidence            4

>PLN03032 serine decarboxylase; Provisional

Probab=100.00  E-value=2.1e-32  Score=250.71  Aligned_cols=315  Identities=16%  Similarity=0.173  Sum_probs=244.8

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcE--EEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI--IWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i--~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ...+++++.+++....+||.+ .+..+....+.+.++++++++++|++++++  +||+|||+|+..++.+....  .++.
T Consensus        36 ~~~~~~~~~~~~~~~~gnP~s-~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~--~~~~  112 (374)
T PLN03032         36 DYGELSQLMKYSINNLGDPFI-ESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREV--FPDG  112 (374)
T ss_pred             ChHHHHHHHHhcccCCCCCcc-cCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHh--CCCc
Confidence            446788888888877899999 888888999999999999999999987765  99999999999888865432  2446


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      +|+++..+|+|...++..+   |..++.||++++|.+|+++|++++++   +|.+|+++..+|++|.+.|+++|+++|++
T Consensus       113 ~vi~s~~~H~Sv~kaa~~l---g~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~  189 (374)
T PLN03032        113 ILYASRESHYSVFKAARMY---RMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKE  189 (374)
T ss_pred             EEEeCCCceeHHHHHHHHc---CCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHH
Confidence            8999999999999998888   78888999999999999999999987   57899999999999999999999999999


Q ss_pred             cC-----cEEEEecccccCcccc-------ccCcccccEEEeccccccC-CCCceEEEEecCCCCccc---cccccCCcc
Q psy8850         165 KG-----VIFHCDAAQAVGKIDI-------NIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIE---AQIHGGGHE  228 (397)
Q Consensus       165 ~g-----i~livD~a~~~~~~~~-------~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~---~~~~~~~~~  228 (397)
                      +|     +++|+|++++++..++       ++. .++|++++|+||++| |.|+|+++++++....+.   +++...   
T Consensus       190 ~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~---  265 (374)
T PLN03032        190 LGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSR---  265 (374)
T ss_pred             hCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCC---
Confidence            96     5899999999877664       443 269999999999777 999999999976554332   111111   


Q ss_pred             ccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLL  307 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (397)
                      ..-..|+.+....++++.+++.+ .+++.++.+++.++++++.+.|++  .++.+...+.     ...+.|+......+.
T Consensus       266 d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~--~~~~~~~~p~-----~~~V~f~~~~~~~~~  338 (374)
T PLN03032        266 DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTE--AGLTCRLNEL-----SSTVVFERPMDEAFI  338 (374)
T ss_pred             CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh--CCCcEEECCC-----ceEEEEcCCCcHhHh
Confidence            11123444545566666777765 568999999999999999999998  4666555432     334555533222221


Q ss_pred             HHhCCcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         308 MAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       308 ~~l~~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                         ++-.+..                        .++.+|+++....+.+.+|++++.|++
T Consensus       339 ---~~w~l~~------------------------~~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        339 ---KKWQLAC------------------------EGDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             ---heeeecc------------------------cCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence               1211111                        025799999988889999999998875

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=100.00  E-value=1.2e-32  Score=252.94  Aligned_cols=327  Identities=18%  Similarity=0.155  Sum_probs=245.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhh---HHHHHHHHHHHHHHHhCCCC-CcEEEeCC-hhHHHHHHHHHhHhhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWT---AEKAIEKARNEVAQLIYADP-REIIWTSG-ATESNNLAIKGAAHFY   82 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~~-~~i~~~~g-~t~a~~~~l~~l~~~~   82 (397)
                      .+|..|++++.+++..+. +.+++.+..+..   +.+.++++++.++++++.+. .++++++| ||.|+++++.++.   
T Consensus         2 ~~p~~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~---   77 (349)
T TIGR01364         2 ALPEEVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL---   77 (349)
T ss_pred             CCCHHHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC---
Confidence            578999999999998755 666655544444   44899999999999999843 35777755 9999999999998   


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC----CCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG----LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~----~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                       .+++++++......+... .+.+.+.|. +..+..++.+    .+++++++  +++++++|+++|..|+||+..|    
T Consensus        78 -~~~~~~l~i~~G~fg~r~-~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~----  148 (349)
T TIGR01364        78 -AEGKVADYIVTGAWSKKA-AKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR----  148 (349)
T ss_pred             -CCCCeEEEEECCHHHHHH-HHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc----
Confidence             678888777666655544 344555688 7777754322    45555554  3568999999999999999887    


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC-----ccccccC
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-----HEYGLRS  233 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  233 (397)
                       ++++.+++++++|+++++|..++|+..+  |++++|.||++||+|+|+++++++.++++.+......     ......+
T Consensus       149 -~l~~~~~~l~iVDavss~g~~~id~~~~--d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (349)
T TIGR01364       149 -ELPDVKNAPLVADMSSNILSRPIDVSKF--GLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMY  225 (349)
T ss_pred             -eecccCCCeEEEEccccccCccCCHHHc--cEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCC
Confidence             6777889999999999999999999854  5999999997789999999999987766654322111     0112345


Q ss_pred             CCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC-CCCCCCceEEEEecCCC-hHHHHHH
Q psy8850         234 GTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNFIE-GESLLMA  309 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~  309 (397)
                      +|||+..++++.++++++.+  +++++.++..++++++++.|++ ++++..... +..+.+.++.|.+++.. ..++...
T Consensus       226 ~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~  304 (349)
T TIGR01364       226 NTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDN-SNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKE  304 (349)
T ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHH
Confidence            79999999999999999865  5999999999999999999999 877654532 22344456677766431 1344333


Q ss_pred             hC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         310 IK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       310 l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.  |+++.+|..                     ..+.+|+|+..+++.+|||+++++|+++.++
T Consensus       305 ~~~~Gi~~~~~~~---------------------~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       305 AEERGLVSLKGHR---------------------SVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             HHHCCCcccCCcc---------------------ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            32  665544421                     1268999999999999999999999987653

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=100.00  E-value=6.1e-32  Score=253.38  Aligned_cols=328  Identities=18%  Similarity=0.184  Sum_probs=246.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      +++++++.+++++.+++....+++..  +   ....+...++++++++++|++++++++++|+++++..++.++.....+
T Consensus        28 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~  102 (371)
T PRK13520         28 MCTEPHPIARKAHEMFLETNLGDPGL--F---PGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKA  102 (371)
T ss_pred             eecCchHHHHHHHHHHHhcCCCCccc--C---ccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccC
Confidence            46678899999999988764444422  2   134556788999999999998778899999999999998876532113


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      ++++|++++++|+++.......   |.+++.+|.++++.+|+++|++++++++++|++.+++|++|.+.|+++|.++|++
T Consensus       103 ~~~~vl~~~~~h~s~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~  179 (371)
T PRK13520        103 EKPNIVVPESAHFSFDKAADML---GVELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALE  179 (371)
T ss_pred             CCceEEecCcchHHHHHHHHHc---CceEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHH
Confidence            5789999999999987766555   8999999998888899999999999888888888889999999999999999999


Q ss_pred             cCcEEEEecccccCccc-------cccCcccccEEEeccccc-cCCCCceEEEEecC-CCCccc---cccccCCcccccc
Q psy8850         165 KGVIFHCDAAQAVGKID-------INIQNYKVDLMSFSAHKI-YGPKGIGALYIRRN-PRTRIE---AQIHGGGHEYGLR  232 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~-------~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~-~~~~~~---~~~~~~~~~~~~~  232 (397)
                      +|+++++|++|+.+..+       ++....++|++++|.||+ +++.++|+++++++ ....+.   +...+..  ....
T Consensus       180 ~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~--~~~~  257 (371)
T PRK13520        180 NGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKK--QATL  257 (371)
T ss_pred             cCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCccccCCC--Ccce
Confidence            99999999999855432       233345789999999994 55666787776543 333221   1111111  1112


Q ss_pred             CCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC
Q psy8850         233 SGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK  311 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  311 (397)
                      .|+++...++++.++++.+. ++++++.++..++++++.+.|++ + ++.+...+.   .+++.+.++  +..++...|.
T Consensus       258 ~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~v~~~~~--~~~~v~~~L~  330 (371)
T PRK13520        258 TGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKE-R-GFEPVIEPV---LNIVAFDDP--NPDEVREKLR  330 (371)
T ss_pred             EeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHh-C-CCEEecCCC---ceEEEEecC--CHHHHHHHHH
Confidence            34556666788888888763 46888999999999999999998 5 776333322   345566655  4667777775


Q ss_pred             --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                        |+.+....                      ..+.+|+++..+++++||+++++.|+++++
T Consensus       331 ~~gi~v~~~~----------------------~~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        331 ERGWRVSVTR----------------------CPEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             HCCceeccCC----------------------CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence              77765421                      126799999888999999999999998764

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=6.7e-32  Score=253.38  Aligned_cols=326  Identities=17%  Similarity=0.161  Sum_probs=235.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ..++++.+.+++.+.+....        ...|.......++++++++++|+++++|++++|+++|+.+++.++.    .+
T Consensus        39 ~~~~~~~~~~a~~~~~~~~~--------~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~----~~  106 (380)
T PRK06225         39 HLGPHEEVREAMIRCIEEGE--------YCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFL----SP  106 (380)
T ss_pred             CCCCCHHHHHHHHHHHhcCC--------CCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc----CC
Confidence            34678999999999886411        1112223457889999999999998899999999999999999887    78


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC---CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG  159 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~---~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~  159 (397)
                      |++|++++++|..+...+...   |.+++.++.+.   ++.+|+++++++++++++++++++++||||.+++   +++|.
T Consensus       107 gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~  183 (380)
T PRK06225        107 GDNAVTPDPGYLIIDNFASRF---GAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFA  183 (380)
T ss_pred             CCEEEEcCCCCcchHHHHHHh---CceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence            999999999998877666666   99999998742   3579999999999999999999999999999887   77889


Q ss_pred             HHHHhcCcEEEEeccccc---CccccccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCC
Q psy8850         160 ELCRSKGVIFHCDAAQAV---GKIDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~---~~~~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
                      ++|+++|+++|+|++|..   +..+......+..+++.|++|.+|++|  +|+++++++....+.....+       .. 
T Consensus       184 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~~~-------~~-  255 (380)
T PRK06225        184 EIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVIN-------DL-  255 (380)
T ss_pred             HHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHHhc-------cc-
Confidence            999999999999999852   111111111245677889999767656  69999987665555443211       11 


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHHHHHHhC-
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAIK-  311 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~-  311 (397)
                      +.+.....+..++++.....+++..+.++++++.+.+.|++ +++..+...+.  .+.++++.++.  .+..++...|. 
T Consensus       256 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~l~~~l~~  332 (380)
T PRK06225        256 GTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDE-IEGVFLPVYPS--HGNMMVIDISEAGIDPEDLVEYLLE  332 (380)
T ss_pred             CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CcCCccccCCC--CCeEEEEEcccccCCHHHHHHHHHH
Confidence            22333333333445433334556666777778888888887 66643321111  14566677653  46677887775 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                       ||.+.+|..|.+                ..+.+++|++++.  +++++++++++|+++++++|+
T Consensus       333 ~gi~v~~g~~~~~----------------~~~~~~iR~s~~~--~~e~l~~~~~~l~~~~~~~~~  379 (380)
T PRK06225        333 RKIFVRQGTYTSK----------------RFGDRYIRVSFSI--PREQVEVFCEEFPDVVETLRT  379 (380)
T ss_pred             CCEEEcCCcccCc----------------CCCCceEEEEeCC--CHHHHHHHHHHHHHHHHHhhc
Confidence             899998865432                1123789999975  789999999999999998875

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=100.00  E-value=5.9e-32  Score=249.61  Aligned_cols=334  Identities=15%  Similarity=0.110  Sum_probs=245.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCc---chhhhHHHHHHHHHHHHHHHhCCCC-CcE-EEeCChhHHHHHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNH---IYGWTAEKAIEKARNEVAQLIYADP-REI-IWTSGATESNNLAIK   76 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~-~~i-~~~~g~t~a~~~~l~   76 (397)
                      -++++++.|+.|++++.+.+..+. +.+.+.+   ..+..+.+.+.++++.++++++.+. .++ ++++|||.|+++++.
T Consensus         7 ~~pGP~~~p~~V~~a~~~~~~~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~   85 (360)
T PRK05355          7 FSAGPAMLPEEVLEQAQQELLDWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPM   85 (360)
T ss_pred             ccCCCCCCCHHHHHHHHHHhhccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHH
Confidence            367888999999999999875532 3322222   2244555899999999999999843 344 555788889999999


Q ss_pred             HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHH-HhcCCceEEEEecccCcccccc-
Q psy8850          77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQ-  153 (397)
Q Consensus        77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~-~i~~~~~~v~~~~~~~~tG~~~-  153 (397)
                      .+.    .+|+++++......+... .+.+.+.|.. ..+..+. .+..+..++++ ++++++++|.++|..|+||.+. 
T Consensus        86 nl~----~~g~~~l~i~~G~fg~r~-~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~  159 (360)
T PRK05355         86 NLL----GGGKKADYVDTGSWSKKA-IKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH  159 (360)
T ss_pred             hcC----CCCCeEEEEECCHHHHHH-HHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceEecC
Confidence            998    677777766655555543 3444555765 6666553 56566666666 7888899999999999999998 


Q ss_pred             cHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC-----cc
Q psy8850         154 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-----HE  228 (397)
Q Consensus       154 ~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~-----~~  228 (397)
                      |+++|      +|+++++|+++++|..++|+..+  |++++|.||++||+|+|+++++++..+++.+...+..     ..
T Consensus       160 ~i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~  231 (360)
T PRK05355        160 ELPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHAD  231 (360)
T ss_pred             ccccc------CCCcEEEEcCccccCccCCHHHc--cEEEEeccccccCCceEEEEECHHHHhhcccCCChHHHHHHHHh
Confidence            66666      89999999999999999999865  6999999997789999999999988777655311100     11


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGES  305 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  305 (397)
                      ....++|+|...++++.++++++.+  +++++.++.+++++++++.|++ ++.+....++..+.+.++.|.+++. ...+
T Consensus       232 ~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~  310 (360)
T PRK05355        232 NDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDS-SDFYRNPVAPEDRSRMNVPFTLADEELDKK  310 (360)
T ss_pred             cCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCChhhcCCcEEEEEcCChHHHHH
Confidence            2234689999999999999999865  5999999999999999999999 6633332222234456677776653 2233


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +...+.  |+.+..|..                     ..+.+|+|+..++|.+|||+++++|+++++.
T Consensus       311 ~~~~~~~~Gi~~~~~~~---------------------~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        311 FLAEAKAAGLVGLKGHR---------------------SVGGMRASIYNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             HHHHHHHCCCcccCCCC---------------------ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            333332  444433210                     1278999999999999999999999997754

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=100.00  E-value=3.7e-31  Score=246.59  Aligned_cols=329  Identities=16%  Similarity=0.144  Sum_probs=237.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ..|..+++++++.++... ++++.+-.+..+....+...++++.+++++|+  +++++++|+++|+.+++.++.    ++
T Consensus        10 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~----~~   82 (361)
T cd06452          10 GGRLTPEARKALIEWGDG-YSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLC----EK   82 (361)
T ss_pred             CCCCCHHHHHHHHHHhcc-cCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhc----CC
Confidence            456788899998888844 35554323333444456788999999999998  589999999999999999887    78


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC--CCCHHHHHHHhc-------CCceEEEEecccCcccccccHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG--LITLSQLEEKIC-------SDTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~--~~d~~~l~~~i~-------~~~~~v~~~~~~~~tG~~~~l~  156 (397)
                      |++|+++.++|.+....+...   |.+++.++.+.++  .+|+++++++++       +++++|++++++||+|.+.|++
T Consensus        83 gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~  159 (361)
T cd06452          83 GDWVVVDGLAHYTSYVAAERA---GLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAK  159 (361)
T ss_pred             CCEEEEcCCcchHHHHHHHhc---CCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHH
Confidence            999999999998887655444   9999999988654  899999999886       3789999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCcc-ccccCC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHE-YGLRSG  234 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  234 (397)
                      +|.++|+++|+++|+|++|+.+..+++...+++|++++|+|| ++++.++|+++++++..+.+......+... .....+
T Consensus       160 ~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  239 (361)
T cd06452         160 KIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGC  239 (361)
T ss_pred             HHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeeecc
Confidence            999999999999999999998887777777789999999999 555667899999876655543322111100 011123


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC---------ChHH
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGES  305 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  305 (397)
                      ++.....+++.++++...+.++.+.+ ..++++++++.|++ ++++.++.... ...+++.+..+..         +..+
T Consensus       240 ~~~~~~~~~~~~al~~~~~~~~~~~~-~~~~~~~l~~~L~~-l~g~~v~~~~~-~~~n~~~~~~~~~~~~~~~~~~~~~~  316 (361)
T cd06452         240 TLRGAPLVTLMASFPHVKERVKRWDE-EVEKARWFVAELEK-IEGIKQLGEKP-KNHDLMFFETPSFDEIAKKHKRRGYF  316 (361)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-CCCeEEECCCC-CCCceEEEEcCCcchhhhhccccchh
Confidence            33334455555667665544443333 34456899999998 88888875322 2244555554421         1235


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      +.+.|.  ||.+..     +                 ....++|++... .++++++.++++|+++.
T Consensus       317 ~~~~L~~~gI~~~~-----~-----------------~~~~~~ri~~~g-~~~e~~~~l~~al~~~~  360 (361)
T cd06452         317 LYSELKKRGIHGIK-----P-----------------GLTRYFKLSTYG-LTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             HHHHHHHcCceEEc-----C-----------------CCceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence            666665  665311     0                 012678999843 58999999999998654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-31  Score=232.13  Aligned_cols=324  Identities=16%  Similarity=0.183  Sum_probs=257.9

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .+.||+|++++.+....-       .+.+.+...+....+.++.++.++.  .++.|++++|.-.++.++++++.    +
T Consensus        37 f~~pp~i~~Al~~rvdhG-------vfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T----~  105 (388)
T COG1168          37 FPTPPEIIEALRERVDHG-------VFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT----K  105 (388)
T ss_pred             CCCCHHHHHHHHHHHhcC-------CCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC----c
Confidence            467899999999998761       3444456667888999999999885  56789999999999999999998    8


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCC--CCCHHHHHHHhcC-CceEEEEecccCccccccc---HHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNG--LITLSQLEEKICS-DTILVSVMLVNNEIGVIQP---ILE  157 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~--~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~---l~~  157 (397)
                      +||.|++..|.|+.+...+..-   |-++...|.. +++  .||+++||+++.+ +.+++++++||||||.+..   +.+
T Consensus       106 ~gd~Vvi~tPvY~PF~~~i~~n---~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~  182 (388)
T COG1168         106 PGDGVVIQTPVYPPFYNAIKLN---GRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRK  182 (388)
T ss_pred             CCCeeEecCCCchHHHHHHhhc---CcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHH
Confidence            9999999999999999998877   8888888886 343  6799999998876 5699999999999999877   678


Q ss_pred             HHHHHHhcCcEEEEecccc----cCcccccc-----CcccccEEEeccccccCCCC--ceEEEEecCCC-CccccccccC
Q psy8850         158 IGELCRSKGVIFHCDAAQA----VGKIDINI-----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHGG  225 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~----~~~~~~~~-----~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~-~~~~~~~~~~  225 (397)
                      |.++|.+||+.||.|++|+    .|.-++.+     ..-+..+.+.|.+|.+...|  ++.++++++.. .+....+.  
T Consensus       183 i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~--  260 (388)
T COG1168         183 IAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLK--  260 (388)
T ss_pred             HHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHH--
Confidence            9999999999999999997    22222111     11145688899999555444  67777775542 22222111  


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CCh
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG  303 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  303 (397)
                          ....+.+|..++.+..+|.+....+++.+.+.++.+++++.+.+.+.+|++.+..+++   .+++++.++.  .+.
T Consensus       261 ----~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~g---TYL~WLD~r~l~l~d  333 (388)
T COG1168         261 ----RNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQG---TYLAWLDCRELGLDD  333 (388)
T ss_pred             ----HhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCC---ceeeeeeccccCCCh
Confidence                1223468889999999999988889999999999999999999999899999998877   6777888874  455


Q ss_pred             HHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       304 ~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .++.+.+.   +|.+..|..|...                 +.+++|+.++.  +.+-+++++++|+..++.
T Consensus       334 ~~l~~~ll~~akVal~~G~~FG~~-----------------g~gf~RlN~ac--pr~~L~eal~ri~~al~~  386 (388)
T COG1168         334 SELAEFLLEEAKVALSPGSTFGEE-----------------GSGFVRLNFAC--PRAILEEALERLKRALKK  386 (388)
T ss_pred             HHHHHHHHHhhcEeccCCCccCcC-----------------CCceEEEecCC--CHHHHHHHHHHHHHHHhc
Confidence            56666665   8999999877662                 24899999985  899999999999977764

>PRK06207 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.3e-31  Score=251.01  Aligned_cols=326  Identities=15%  Similarity=0.127  Sum_probs=233.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CC-CcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DP-REIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~-~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.+.+++.+.+....   .. .|.......+..+.+.+.+++.+|.  ++ ++|++|+|+++|+.+++.++.    +
T Consensus        53 ~p~~~~~~~~~~~~~~~~---~~-~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~----~  124 (405)
T PRK06207         53 EPTPGAFELFSAGVERGG---VQ-AYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV----A  124 (405)
T ss_pred             CCCHHHHHHHHHHHhcCC---Cc-cCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc----C
Confidence            467888888888775411   01 2222222344556666666777784  55 789999999999999999988    8


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-----CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-----NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-----~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                      +||+|++.+|+|+.+...+..+   |.+++.++.+     .++.+|+++|++++.+++++|++++|+||||.+++   ++
T Consensus       125 ~Gd~Vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~  201 (405)
T PRK06207        125 RGDKVAIVQPDYFANRKLVEFF---EGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIA  201 (405)
T ss_pred             CCCEEEEeCCCchhHHHHHHHc---CCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHH
Confidence            9999999999999988777776   9999999875     24678999999999889999999999999999998   56


Q ss_pred             HHHHHHHhcCcEEEEecccccCc----cccccC----cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGK----IDINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~----~~~~~~----~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      +|+++|++||++||+|++|+...    ....+.    ..+..+++.|++|.++.+|  +|+++.+++....+......  
T Consensus       202 ~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~~--  279 (405)
T PRK06207        202 QIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAI--  279 (405)
T ss_pred             HHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHHhH--
Confidence            78889999999999999998321    111111    1234588999999766445  89998887665555432211  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE  304 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  304 (397)
                          ...+ .+.....++..+++.....+++..+++.++++.+.+.|++ ++++.+..+.+   +.++++.++.  .+..
T Consensus       280 ----~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~g---g~fl~~~l~~~~~~~~  350 (405)
T PRK06207        280 ----VSLR-AAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRG-VEGVFVRAPQA---GSYLFPRLPRLAVSLH  350 (405)
T ss_pred             ----hccC-CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCe---eEEEEEeCcccCCCHH
Confidence                1111 2223333444455422223566677778888999999987 66766554433   4566777764  3567


Q ss_pred             HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      ++.+.+.   ||.+.+|..|..                 ...+++||+++.  +.+++++.+++|.+++++++
T Consensus       351 ~~~~~l~~~~gV~v~pG~~F~~-----------------~~~~~~Ris~~~--~~~~l~~al~rl~~~l~~~~  404 (405)
T PRK06207        351 DFVKILRLQAGVIVTPGTEFSP-----------------HTADSIRLNFSQ--DHAAAVAAAERIAQLIERYR  404 (405)
T ss_pred             HHHHHHHHhcCEEEeCchHhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhh
Confidence            7877773   899999976543                 013789999996  68999999999999887664

>PRK05957 aspartate aminotransferase; Provisional

Probab=100.00  E-value=9.6e-31  Score=245.91  Aligned_cols=326  Identities=16%  Similarity=0.155  Sum_probs=235.0

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC---CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD---PREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.+++++.+.+....  . . .|.......+....+++.+++.+|..   +++|++|+|+++++..++.++.    +
T Consensus        40 ~~~~~~~~a~~~~~~~~~--~-~-~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~----~  111 (389)
T PRK05957         40 PPPPEAIEALNNFLANPE--N-H-KYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT----D  111 (389)
T ss_pred             CCCHHHHHHHHHHHhCCC--C-C-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc----C
Confidence            578899999988775311  1 1 23333334567777888888888863   5679999999999999998876    7


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL  161 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l  161 (397)
                      +||+|++++|+|..+...+...   |.+++.++.+.++.+|++++++++++++++|++++++||||.++|   +++|+++
T Consensus       112 ~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~  188 (389)
T PRK05957        112 PGDEIILNTPYYFNHEMAITMA---GCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQI  188 (389)
T ss_pred             CCCEEEEeCCCCcCHHHHHHhc---CCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHH
Confidence            9999999999998887665554   999999999877789999999999999999999999999999998   7889999


Q ss_pred             HHhcCcEEEEecccccCcc------c-ccc-CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccc
Q psy8850         162 CRSKGVIFHCDAAQAVGKI------D-INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGL  231 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~------~-~~~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
                      |++||++||+|++|.....      + ..+ ......+++.|++|.+|.+|  +|+++++++..+.+......      .
T Consensus       189 a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~------~  262 (389)
T PRK05957        189 CAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDT------I  262 (389)
T ss_pred             HHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHHHhh------c
Confidence            9999999999999872211      1 111 11134588899999777667  89999887665555443211      1


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCceEEEEec-CCChHHHHHH
Q psy8850         232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFN-FIEGESLLMA  309 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  309 (397)
                      .. ..+......+..+++.....+++..+++.++++.+.+.|++ ++++ .+..+.+   +..+++.++ +.++.++.+.
T Consensus       263 ~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~g---g~~~~~~~~~~~~~~~~~~~  337 (389)
T PRK05957        263 LI-CPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQ-LQDRCTLHPANG---AFYCFLKVNTDLNDFELVKQ  337 (389)
T ss_pred             cc-CCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh-cCCCccccCCCe---eEEEEEeCCCCCChHHHHHH
Confidence            11 22223333333445432234566777788999999999988 6663 3333222   344566665 4567778777


Q ss_pred             hC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         310 IK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       310 l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.   ||.+.+|..|...                 ..+++||+++. .+++++++.+++|.+.++.+
T Consensus       338 l~~~~gv~v~pg~~f~~~-----------------~~~~iRis~~~-~~~~~l~~~~~~l~~~~~~~  386 (389)
T PRK05957        338 LIREYRVAVIPGTTFGMK-----------------NGCYLRIAYGA-LQKATAKEGIERLVQGLKTI  386 (389)
T ss_pred             HHHHCCEEEccchhhCCC-----------------CCCEEEEEEec-CCHHHHHHHHHHHHHHHHhh
Confidence            63   8999999765430                 13689999975 47899999999998887654

>PRK06108 aspartate aminotransferase; Provisional

Probab=100.00  E-value=8.4e-31  Score=246.55  Aligned_cols=322  Identities=16%  Similarity=0.126  Sum_probs=231.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++++.+++++.+.+....    . .|.......+....+.+.+.+.+|  +++++|++|+|+++|+.+++.++.    ++
T Consensus        37 ~~~~~~~~~~~~~~~~~~----~-~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~~  107 (382)
T PRK06108         37 PTPDFIRDAAAAALADGE----T-FYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV----GP  107 (382)
T ss_pred             CCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc----CC
Confidence            557889999888775411    1 122222223444445555555557  677899999999999999999887    78


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC---CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG  159 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~---~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~  159 (397)
                      ||.|++++|+|+.+...+...   |.+++.+|.+.   ++.+|++++++.++++++++++++++||||.+++   +++|+
T Consensus       108 gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~  184 (382)
T PRK06108        108 GDEVVAVTPLWPNLVAAPKIL---GARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAIL  184 (382)
T ss_pred             CCEEEEeCCCccchHHHHHHC---CCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHH
Confidence            999999999999988777766   99999999863   3468999999999889999999999999999987   57789


Q ss_pred             HHHHhcCcEEEEecccccCccc--------cccCc-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcc
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKID--------INIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE  228 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~--------~~~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~  228 (397)
                      ++|+++|+++|+|++|+.....        .++.. .+..+++.|++|.+|.+|  +|+++++++....+.....     
T Consensus       185 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~-----  259 (382)
T PRK06108        185 AHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIE-----  259 (382)
T ss_pred             HHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHH-----
Confidence            9999999999999998743211        11211 135688999999665444  7999998766555543321     


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLL  307 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  307 (397)
                        +.....+.....+...+++...+.+++..++++++++.+.+.|++ ++++.+..+.+   +.++++.++. .+..++.
T Consensus       260 --~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~~---g~~~~~~l~~~~~~~~~~  333 (382)
T PRK06108        260 --YNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRA-LPGVEVAKPDG---AMYAFFRIPGVTDSLALA  333 (382)
T ss_pred             --hcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCe---eEEEEEeCCCCCCHHHHH
Confidence              111223333334444555543445678888999999999999988 77776665432   3445666654 3556777


Q ss_pred             HHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         308 MAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       308 ~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +.| .  ||.+.+|..|.+                 ...+++||+++.  +++++++++++|.++++
T Consensus       334 ~~ll~~~gV~v~pg~~f~~-----------------~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        334 KRLVDEAGLGLAPGTAFGP-----------------GGEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             HHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            766 2  899998865532                 123789999997  89999999999988764

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=100.00  E-value=6.4e-30  Score=238.59  Aligned_cols=329  Identities=16%  Similarity=0.155  Sum_probs=228.4

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+...+.+.+++.++...+.+.+.- .........+...++++.+++++|++  .+.+++|+++++..++.++.    ++
T Consensus        17 ~g~~~~~~~~a~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~e~lA~~~g~~--~~~i~~g~~~a~~~~~~~l~----~~   89 (370)
T TIGR02539        17 GGVLTEAARKALVEFGDGYSVCDFC-GGRLDQITKPPIHDFLEDLAEFLGMD--EARVTHGAREGKFAVMHALC----KE   89 (370)
T ss_pred             CCCCcHHHHHHHHHHhhcccccccc-ccccccccchHHHHHHHHHHHHhCCC--ceEEECChHHHHHHHHHHhh----CC
Confidence            3456677788877776532211110 01111112335677888899999997  46678999999999999987    78


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcC-------CceEEEEecccCcccccccHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS-------DTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~-------~~~~v~~~~~~~~tG~~~~l~  156 (397)
                      ||+|+++.+.|.+....+...   |.+++.+|.+  .++.+|++++++++++       ++++|++++++||+|.+.|++
T Consensus        90 gd~Vl~~~~~h~s~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~  166 (370)
T TIGR02539        90 GDWVVLDGLAHYTSYVAAERA---GLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAG  166 (370)
T ss_pred             CCEEEECCcccHHHHHHHHHc---CCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHH
Confidence            999999999998887655444   9999999986  3578899999999863       678999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccC-CCCceEEEEecCCCCccccccccCCccc-cccCC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEY-GLRSG  234 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  234 (397)
                      +|.++|+++|+++++|++|+.|..+.+....++|+++.|+||+++ +.++|+++++++.++.+......+.... .+..+
T Consensus       167 ~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~  246 (370)
T TIGR02539       167 KVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGC  246 (370)
T ss_pred             HHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecc
Confidence            999999999999999999998876666655678999999999554 3447999999887776654432211110 01112


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC---------ChHH
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGES  305 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  305 (397)
                      +.......++.++++...+.+....+.+.. ++++++.|++ + ++.++.... ...+++.+.++..         ....
T Consensus       247 ~~~~~~~~~~~~al~~~~~~l~~~~~~~~~-~~~l~~~L~~-~-g~~~~~~~~-s~t~~v~~~~~~~~~~~~~~~~~~~~  322 (370)
T TIGR02539       247 TSRGAPIVTMMASFPHVVERVKRWDEEVKK-TRWFVAELED-I-GFIQLGQKP-KEHDLVKFETPGFHEIAQKHKRRGYF  322 (370)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-C-CcEEEccCC-CcCceEEEECCchhHHhhhhccccHH
Confidence            222234444555666544444444444444 5689999998 4 676653211 1245555665532         1235


Q ss_pred             HHHHhC--CcE-ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIA-VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       306 ~~~~l~--~i~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.+.|.  ||. +.++                       ..++||+++. ..+++|+++++++|++++++
T Consensus       323 ~~~~L~e~GI~~ir~~-----------------------~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       323 LYEELKKRGIHGIRSG-----------------------QTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             HHHHHHhCCCccccCC-----------------------cceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence            666665  664 3321                       1268999984 46999999999999988764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK07324 transaminase; Validated

Probab=100.00  E-value=8e-31  Score=244.78  Aligned_cols=316  Identities=16%  Similarity=0.160  Sum_probs=228.3

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .|+.+ +++.+.+....         .+|.......++++.++++++ +++++|++|+|+++|+.+++.++.    ++||
T Consensus        40 ~~~~~-~~~~~~~~~~~---------~~Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~----~~gd  105 (373)
T PRK07324         40 AGKNP-EAFYQELGQKK---------LTYGWIEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALV----EPGD  105 (373)
T ss_pred             cCcch-HHHHHHHhcCC---------ccCCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCC
Confidence            34556 66666665411         112222356789999999885 677899999999999999999987    7999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELC  162 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~  162 (397)
                      +|+++.|+|+.+....+..   |.+++.+|.+.  ++.+|+++++++++++++++++++|+||||.+++   +++|+++|
T Consensus       106 ~Vl~~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a  182 (373)
T PRK07324        106 HVISVYPTYQQLYDIPESL---GAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIA  182 (373)
T ss_pred             EEEEcCCCchhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence            9999999999888776666   99999999874  2458999999999999999999999999999999   78899999


Q ss_pred             HhcCcEEEEecccccCcc---ccccC-cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         163 RSKGVIFHCDAAQAVGKI---DINIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~---~~~~~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      ++||+++|+|++|..-..   ..++. ..+..+++.|++|.+|.+|  +|+++++++....+......      ...+.+
T Consensus       183 ~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~------~~~~~~  256 (373)
T PRK07324        183 RSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDY------TMICAG  256 (373)
T ss_pred             HHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCc------EEecCC
Confidence            999999999999863211   11111 1234578889999766445  69988876655555433211      011222


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC---C
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK---D  312 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~---~  312 (397)
                      ...+.++ ..+++.....++..++.++++++.+.+.|++ .+++.+..+.+   +..+++.++. .+..++...+.   |
T Consensus       257 ~~~q~~a-~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~-~~~~~~~~p~g---g~~~~i~~~~~~~~~~~~~~ll~~~g  331 (373)
T PRK07324        257 VFDDMLA-SLALEHRDAILERNRKIVRTNLAILDEWVAK-EPRVSYVKPKA---VSTSFVKLDVDMPSEDFCLKLLKETG  331 (373)
T ss_pred             hHHHHHH-HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEECCCc---eEEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            2333333 3455543445677778888889999999987 66776665533   2334455542 46677877752   8


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      |.+.+|..|..                   .+++||+++.  +++.+++.+++|+++++++
T Consensus       332 v~v~pg~~F~~-------------------~~~iRis~~~--~~~~l~~~l~rl~~~l~~~  371 (373)
T PRK07324        332 VLLVPGNRFDL-------------------EGHVRIGYCC--DTETLKKGLKKLSEFLREF  371 (373)
T ss_pred             EEEECccccCC-------------------CCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence            99999975532                   2789999985  6899999999999988754

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=100.00  E-value=2.4e-30  Score=245.24  Aligned_cols=327  Identities=16%  Similarity=0.131  Sum_probs=232.3

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      .++++++++++.+.+.....        ..|.......++|++++++++      +++++|++|+|+++|+.+++.++. 
T Consensus        68 ~~~~~~~~~a~~~al~~~~~--------~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~-  138 (430)
T PLN00145         68 FRTAPEAEDAVAAALRSGKY--------NSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLA-  138 (430)
T ss_pred             CCCCHHHHHHHHHHHHcCcC--------CCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhc-
Confidence            45678999999988864111        112223356778888888874      466789999999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l  155 (397)
                         ++||+|+++.|.|+.+.......   |.+++.+++.  .++.+|+++++++++++++++++++|+||||.++|   +
T Consensus       139 ---~~Gd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l  212 (430)
T PLN00145        139 ---QPGANILLPRPGYPLYEARAVFS---GLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHL  212 (430)
T ss_pred             ---CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHH
Confidence               79999999999999988776666   8899988864  35679999999999999999999999999999999   6


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc---c-ccc---CcccccEEEeccccccCCCC--ceEEEEec-C-CCCcc--cccc
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI---D-INI---QNYKVDLMSFSAHKIYGPKG--IGALYIRR-N-PRTRI--EAQI  222 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~---~-~~~---~~~~~d~~~~s~~K~~g~~g--~g~~~~~~-~-~~~~~--~~~~  222 (397)
                      ++|+++|+++|++||+|++|.....   + ..+   ......+++.|++|.++.+|  +|++++.+ . .....  ...+
T Consensus       213 ~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~  292 (430)
T PLN00145        213 AKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSI  292 (430)
T ss_pred             HHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHH
Confidence            7888899999999999999873211   1 111   11235688999999655556  78888742 2 21110  0000


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-  300 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  300 (397)
                      ..    .......++.....++..+++. ..+.+++..+.++++++.+.+.|++ ++++.+...+..  ...+++.++. 
T Consensus       293 ~~----~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~~~~P~g--a~y~~v~l~~~  365 (430)
T PLN00145        293 RN----YLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKE-IKCITCPHKPEG--SMFVMVKLDLS  365 (430)
T ss_pred             HH----HhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcCCCe--eeEEEeccChh
Confidence            00    0001112334444555456653 2345788889999999999999988 777654422222  3445555542 


Q ss_pred             ----C-ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         301 ----I-EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       301 ----~-~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                          . ++.++...|.   +|.+.+|..|..                   .+++||+++.  +.++++..+++|.+++.+
T Consensus       366 ~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~-------------------~~~lRis~~~--~~~~l~~al~rl~~~~~~  424 (430)
T PLN00145        366 CLSGIKDDMDFCCKLAKEESVVVLPGSALGM-------------------KNWLRITFAI--DPPSLEDGLERLKSFCLR  424 (430)
T ss_pred             hcCCCCCHHHHHHHHHHhCCEEEeCccccCC-------------------CCeEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence                2 3455665443   899999875532                   3899999984  789999999999999988


Q ss_pred             HHhc
Q psy8850         373 LREL  376 (397)
Q Consensus       373 ~~~~  376 (397)
                      +++.
T Consensus       425 ~~~~  428 (430)
T PLN00145        425 HAKL  428 (430)
T ss_pred             hccc
Confidence            8764

>PRK08960 hypothetical protein; Provisional

Probab=100.00  E-value=1e-30  Score=245.84  Aligned_cols=326  Identities=14%  Similarity=0.120  Sum_probs=230.1

Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHH
Q psy8850           1 MDYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNL   73 (397)
Q Consensus         1 ~~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~   73 (397)
                      |+.+.+. ++|+.+++++.+.+....    . .|    .......++|+.++++++      +++++|++|+|+++|+.+
T Consensus        37 l~~g~~~~~~~~~v~~a~~~~~~~~~----~-~Y----~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~  107 (387)
T PRK08960         37 LEIGEPDFTTAEPIVAAGQAALAAGH----T-RY----TAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLL  107 (387)
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHhcCC----C-cc----CCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHH
Confidence            3445555 568999999998876310    0 12    112345667777777763      678899999999999999


Q ss_pred             HHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850          74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        74 ~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~  151 (397)
                      ++.++.    ++||+|++++|+|+++...+...   |.+++.+|++.+  +.+|+++++++++++++++++++|+||||.
T Consensus       108 ~~~~~~----~~gd~vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~  180 (387)
T PRK08960        108 ASSLLV----DPGKHWLLADPGYPCNRHFLRLV---EGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGT  180 (387)
T ss_pred             HHHHhc----CCCCEEEEcCCCCcchHHHHHhc---CCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCc
Confidence            999887    79999999999999999887776   889999998753  468999999999999999999999999999


Q ss_pred             cccH---HHHHHHHHhcCcEEEEecccccCcc---ccccCcc-cccEEEeccccccCCCC--ceEEEEecCCCCcccccc
Q psy8850         152 IQPI---LEIGELCRSKGVIFHCDAAQAVGKI---DINIQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI  222 (397)
Q Consensus       152 ~~~l---~~i~~l~~~~gi~livD~a~~~~~~---~~~~~~~-~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~  222 (397)
                      ++|.   ++|+++|++||+++|+|++|.....   ...+... ...+++.|++|.+|.+|  +|+++++++....+....
T Consensus       181 ~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~  260 (387)
T PRK08960        181 LLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLA  260 (387)
T ss_pred             CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcCHHHHHHHHHHH
Confidence            9995   5677789999999999999863211   1111111 34578899999776556  899999876655544332


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-  300 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  300 (397)
                      ..      +..+ .+.....+..++++. ....+.+.++.+.++++.+.+.|++ . ++.+...+..  +.++++.+++ 
T Consensus       261 ~~------~~~~-~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~p~g--~~f~~~~~~~~  329 (387)
T PRK08960        261 QN------LYIS-ASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRE-L-GFGIAVEPQG--AFYLYADISAF  329 (387)
T ss_pred             hh------hccC-CCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcCCcCCCe--eEEEEEecccc
Confidence            11      1112 233333333345532 2345677788889999999999988 4 4443222221  4556677764 


Q ss_pred             -CChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         301 -IEGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       301 -~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                       .+..++...+ .  ||.+.+|..|...                ..+++||++++.  +.++++.++++|.+++.
T Consensus       330 ~~~~~~~~~~ll~~~gi~v~pg~~f~~~----------------~~~~~iRi~~~~--~~~~l~~al~~l~~~~~  386 (387)
T PRK08960        330 GGDAFAFCRHFLETEHVAFTPGLDFGRH----------------QAGQHVRFAYTQ--SLPRLQEAVERIARGLR  386 (387)
T ss_pred             CCCHHHHHHHHHHhCCEEEcCchHhCCC----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence             4567777664 2  8999999766430                113789999995  67888888888877653

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=100.00  E-value=1.1e-30  Score=242.42  Aligned_cols=282  Identities=21%  Similarity=0.182  Sum_probs=220.9

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChhHHHHHHHHHhHhhhc----------cCCCEEEEcCCCChhh
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFYK----------KRGKHIITVQTEHKSV   99 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~--~~~i~~~~g~t~a~~~~l~~l~~~~~----------~~g~~vl~~~~~~~s~   99 (397)
                      .|..+....+..+++++++++++|.+  ++++++|+|+|+|+.+++.++.....          ..+++|++++++|+++
T Consensus        29 ~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~  108 (345)
T cd06450          29 TWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSV  108 (345)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHH
Confidence            34555566677888999999999985  44799999999999999998764221          1245889999999999


Q ss_pred             HHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEec
Q psy8850         100 LDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA  173 (397)
Q Consensus       100 ~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~  173 (397)
                      ..++..+   |.+++.+|.++++.+|+++|++++++      +++++++++++|++|.+.|+++|+++|+++|+++|+|+
T Consensus       109 ~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~  185 (345)
T cd06450         109 EKAAAYL---DVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDA  185 (345)
T ss_pred             HHHHHHH---hcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEec
Confidence            8887776   89999999988888999999999987      78899999999999999999999999999999999999


Q ss_pred             ccccCccccccC------cccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHH
Q psy8850         174 AQAVGKIDINIQ------NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGE  246 (397)
Q Consensus       174 a~~~~~~~~~~~------~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  246 (397)
                      +|+.+..+.+..      ..++|++++|+|| +++|.|+|+++++                             .+++.+
T Consensus       186 a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-----------------------------~~~~~~  236 (345)
T cd06450         186 AYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-----------------------------ALKLWA  236 (345)
T ss_pred             hhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----------------------------HHHHHH
Confidence            999776543211      1268999999999 6778888887766                             344555


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-----CChHHHHHHhC--CcEeccc
Q psy8850         247 AFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----IEGESLLMAIK--DIAVSSG  318 (397)
Q Consensus       247 al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~--~i~~~~g  318 (397)
                      +++.+. .+++++.++..++++++.+.|.+ ++++.+..++.   ..++.+.++.     .+..++.+.|.  ++.+.++
T Consensus       237 ~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~  312 (345)
T cd06450         237 TLRRFGRDGYGEHIDRIVDLAKYLAELIRA-DPGFELLGEPN---LSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPA  312 (345)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCc---eeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEe
Confidence            666553 46889999999999999999998 88887765433   4566666654     23456777775  4544433


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHH
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKM  368 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~  368 (397)
                      ..+.                   ...++|++++.. ++.+|+|+++++|++
T Consensus       313 ~~~~-------------------~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         313 TTLG-------------------GPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             eEEC-------------------CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            1110                   237899999976 499999999999975

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=100.00  E-value=9.5e-30  Score=238.70  Aligned_cols=322  Identities=18%  Similarity=0.204  Sum_probs=235.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh--ccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY--KKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~--~~~   85 (397)
                      .+.+.+.+++..++....+++..  +.   ...+...++++.+++++|++++++++++|+++++..++.++....  .++
T Consensus        31 ~~~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  105 (373)
T TIGR03812        31 NPHPIAVKAYDMFIETNLGDPGL--FP---GTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKR  105 (373)
T ss_pred             CchHHHHHHHHHHhhcCCCCccc--Cc---cHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCC
Confidence            35566788888877654444432  21   234667889999999999987788999999999988877654211  135


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK  165 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~  165 (397)
                      |++|++++++|.++...++..   |.+++.++.+.++.+|++++++++++++..+++.+++|+||.+.|+++|.++|+++
T Consensus       106 g~~vl~~~~~h~~~~~~~~~~---G~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~  182 (373)
T TIGR03812       106 TPNIIVPESAHFSFEKAAEML---GLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALEN  182 (373)
T ss_pred             CcEEEECCcchHHHHHHHHHc---CCeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHc
Confidence            689999999999987776655   99999999988888999999999988875555555789999999999999999999


Q ss_pred             CcEEEEecccccCcc----------ccccCcccccEEEeccccc-cCCCCceEEEE-ecCCCCccc---cccccCCcccc
Q psy8850         166 GVIFHCDAAQAVGKI----------DINIQNYKVDLMSFSAHKI-YGPKGIGALYI-RRNPRTRIE---AQIHGGGHEYG  230 (397)
Q Consensus       166 gi~livD~a~~~~~~----------~~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~-~~~~~~~~~---~~~~~~~~~~~  230 (397)
                      |+++|+|++|+.+..          .+++...++|++++|+||+ ++|.++|++++ +++....+.   +...+..  ..
T Consensus       183 ~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~--~~  260 (373)
T TIGR03812       183 GIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKK--QA  260 (373)
T ss_pred             CCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcccCcccCCCC--Cc
Confidence            999999999985542          2333334789999999994 55656665554 544443332   1111110  11


Q ss_pred             ccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMA  309 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (397)
                      ...|+++...++++.++++.+ .++++++.+++.++++++++.|++ ++...+..+ .   .+++.+.++  +..++.+.
T Consensus       261 ~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~-~---~~~v~~~~~--~~~~v~~~  333 (373)
T TIGR03812       261 TITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKK-IGFEPVIEP-V---LNIVAFEVD--DPEEVRKK  333 (373)
T ss_pred             ceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEcCC-C---ceEEEEEeC--CHHHHHHH
Confidence            123577777888888899876 457888999999999999999998 643333321 1   345556555  34567777


Q ss_pred             hC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         310 IK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       310 l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      |.  |+.+....                      .++.||++++.+++++|+++++++|++
T Consensus       334 L~~~gi~v~~~~----------------------~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       334 LRDRGWYVSVTR----------------------CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             HHHCCceeccCC----------------------CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            75  77765431                      137899999999999999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PLN02187 rooty/superroot1

Probab=100.00  E-value=4.1e-30  Score=245.19  Aligned_cols=326  Identities=15%  Similarity=0.147  Sum_probs=230.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++|+++++++.+.+....   .. .|    .......++|++++++++      +++++|++|+|+++|+.+++.++.  
T Consensus        83 ~~~~~~~~~~~~~~~~~~---~~-~Y----~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~--  152 (462)
T PLN02187         83 RTCIEAEDAVVDVLRSGK---GN-SY----GPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA--  152 (462)
T ss_pred             CCCHHHHHHHHHHHhCCC---CC-CC----CCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc--
Confidence            456789999888876411   11 12    122345667888888773      578899999999999999999988  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|++++|+|+.+...+...   |.+++.++..  +++.+|+++++++++++++++++++|+||||.+++   ++
T Consensus       153 --~pGd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~  227 (462)
T PLN02187        153 --RPNANILLPRPGFPHYDARAAYS---GLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLK  227 (462)
T ss_pred             --CCCCEEEEeCCCCccHHHHHHHc---CCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHH
Confidence              89999999999999987776666   9999999874  45679999999999999999999999999999998   67


Q ss_pred             HHHHHHHhcCcEEEEecccccCc---cc-cccCcc---cccEEEeccccccCCCC--ceEEEEec-CCC----Ccccccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGK---ID-INIQNY---KVDLMSFSAHKIYGPKG--IGALYIRR-NPR----TRIEAQI  222 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~---~~-~~~~~~---~~d~~~~s~~K~~g~~g--~g~~~~~~-~~~----~~~~~~~  222 (397)
                      +|+++|++||++||+|++|....   .+ ..+..+   ...+++.|++|.++.+|  +|++++.+ +..    ..+....
T Consensus       228 ~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~  307 (462)
T PLN02187        228 KVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIK  307 (462)
T ss_pred             HHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHH
Confidence            88999999999999999997321   11 111111   23578899999766556  78888743 211    1221111


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-  300 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  300 (397)
                      ..    .. ....++.....++.++++. ..+.+++..+.++++++++.+.|++ ++.......+..  +.++++.++. 
T Consensus       308 ~~----~~-~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~-~~~~~~~~~P~g--g~fl~~~l~~~  379 (462)
T PLN02187        308 QN----LD-VTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKD-IPCVVCPKKPES--CTYLLTKLELS  379 (462)
T ss_pred             Hh----cc-ccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCCCCCE--eEEEEeecChh
Confidence            10    00 0112344555555566653 2346788889999999999999998 665432222221  3445554431 


Q ss_pred             ----C-ChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         301 ----I-EGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       301 ----~-~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                          . +..++...+ .  +|.+.+|..|..                   .++|||+++.  ++++++..+++|.+++++
T Consensus       380 ~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~-------------------~~~iRis~~~--~~e~l~~al~rL~~~l~~  438 (462)
T PLN02187        380 LMDNIKDDIDFCVKLAREENLVFLPGDALGL-------------------KNWMRITIGV--EAHMLEDALERLKGFCTR  438 (462)
T ss_pred             hCCCCCCHHHHHHHHHhhCCEEEECccccCC-------------------CCeEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence                2 344554444 3  899999865532                   3899999985  689999999999999988


Q ss_pred             HHhcC
Q psy8850         373 LRELS  377 (397)
Q Consensus       373 ~~~~~  377 (397)
                      +.++.
T Consensus       439 ~~~~~  443 (462)
T PLN02187        439 HAKKT  443 (462)
T ss_pred             hhhcc
Confidence            87655

>PRK07681 aspartate aminotransferase; Provisional

Probab=100.00  E-value=1.7e-30  Score=245.17  Aligned_cols=314  Identities=14%  Similarity=0.108  Sum_probs=225.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCC-CcEEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADP-REIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~-~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++++.+.+++.+.+....      .+.+  . .....++++.++++++      +++ ++|++|+|+++|+.+++.++. 
T Consensus        45 ~~~~~~~~~~~~~~~~~~------~~~y--~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~-  114 (399)
T PRK07681         45 PPADFVREEMVHTANQKE------SYGY--T-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYA-  114 (399)
T ss_pred             CCCHHHHHHHHHHHhccc------cCCC--C-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhC-
Confidence            357788888887765311      1111  1 1245566777766663      466 689999999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l  155 (397)
                         ++||.|++++|+|+.+...+...   |.+++.+|.+++  +.+|++++++++.+++++|++++|+||||.+++   +
T Consensus       115 ---~~Gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~  188 (399)
T PRK07681        115 ---NPGDIILVPDPGYTAYETGIQMA---GATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFF  188 (399)
T ss_pred             ---CCCCEEEECCCCccchHHHHHhc---CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHH
Confidence               89999999999999998887777   999999999753  467999999998889999999999999999999   5


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc----ccccC----cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI----DINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~----~~~~~----~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      ++|+++|++||++||+|++|+....    ...+.    ..+..+++.|++|.+|.+|  +|+++.+++..+.+.....  
T Consensus       189 ~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~--  266 (399)
T PRK07681        189 KEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKS--  266 (399)
T ss_pred             HHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHHHHh--
Confidence            7788899999999999999973211    11111    1134688899999777556  7999887766555543321  


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChH
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE  304 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  304 (397)
                           ....+.+.....+...+++.....+++.++.++++++.+.+.|++ . ++.+..+.+   +.++++.++. .+..
T Consensus       267 -----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~~---g~f~~~~l~~~~~~~  336 (399)
T PRK07681        267 -----NTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRT-F-GWNVDKPAG---SMFVWAEIPKGWTSL  336 (399)
T ss_pred             -----hcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCe---eeEEEEECCCCCCHH
Confidence                 011123333334444555443345677788889999999999998 4 665544433   4566677653 4566


Q ss_pred             HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      ++...+.   ||.+.+|..|..                 ...+++||+++.  +.+++++++++|++
T Consensus       337 ~~~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRis~~~--~~~~~~~~l~~l~~  384 (399)
T PRK07681        337 SFAYALMDRANVVVTPGHAFGP-----------------HGEGFVRIALVQ--DEEVLQQAVENIRN  384 (399)
T ss_pred             HHHHHHHHhCCEEEeCChhhCc-----------------CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence            7776663   899999865542                 013789999984  68999999999987

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=100.00  E-value=2.7e-30  Score=239.77  Aligned_cols=307  Identities=18%  Similarity=0.198  Sum_probs=228.5

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ..++|+.+++++.++......++..           ...++++.+++++++++++|++++|+++++..++.++.    ++
T Consensus        30 ~~~~~~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~----~~   94 (346)
T TIGR01141        30 PFGPPPKAKEALRAEADKLHRYPDP-----------DPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL----EP   94 (346)
T ss_pred             CCCCCHHHHHHHHHhHHHhhcCCCC-----------CHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc----CC
Confidence            3457889999999886442211111           12689999999999988899999999999999988887    78


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK  165 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~  165 (397)
                      |++|++++++|+.+.......   |.+++.++.+.++.+|++++++++.+++++|++++++||||.+.|.+++.++|+.+
T Consensus        95 gd~v~~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~  171 (346)
T TIGR01141        95 GDAVLVPPPTYSMYEISAKIH---GAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERT  171 (346)
T ss_pred             CCEEEEcCCCHHHHHHHHHHc---CCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence            999999999998776555554   99999999988888999999999888999999999999999999999999998877


Q ss_pred             --CcEEEEecccccCcc---cccc-CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850         166 --GVIFHCDAAQAVGKI---DINI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       166 --gi~livD~a~~~~~~---~~~~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
                        |+++|+|++|+....   ..+. ...+.++++.|++|++|.+|  +|+++++++..+.+......         ...+
T Consensus       172 ~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~---------~~~~  242 (346)
T TIGR01141       172 PEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAP---------FNLS  242 (346)
T ss_pred             CCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccCC---------CCCC
Confidence              999999999872111   1111 11234577899999665445  79999887665555443211         1223


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV  315 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~  315 (397)
                      .....+..++++... ++.+..+++.++++++++.|.+ ++++.+... .   +.++++.++. +..++.+.|.  ||.+
T Consensus       243 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~-~---g~~~~~~~~~-~~~~~~~~L~~~gI~v  315 (346)
T TIGR01141       243 RLAQAAAIAALRDDD-FIEKTVEEINAERERLYDGLKK-LPGLEVYPS-D---ANFVLIRFPR-DADALFEALLEKGIIV  315 (346)
T ss_pred             HHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHh-cCCCEECCC-c---CCEEEEecCC-CHHHHHHHHHHCCeEE
Confidence            333343334444322 5777889999999999999998 777765432 2   4566777765 6677877776  8999


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                      .+|..|..                 . .+++|++++   +++++++++++|+
T Consensus       316 ~~g~~f~~-----------------~-~~~iRls~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       316 RDLNSYPG-----------------L-PNCLRITVG---TREENDRFLAALR  346 (346)
T ss_pred             EeCCCcCC-----------------C-CCeEEEecC---CHHHHHHHHHHhC
Confidence            98864421                 0 388999986   7899999998873

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.98  E-value=1.6e-30  Score=244.87  Aligned_cols=318  Identities=14%  Similarity=0.133  Sum_probs=228.8

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      +++.+.+++.+.+....    . .|.    ......++++.+++++    |  +++++|++|+|+++|+.+++.++.   
T Consensus        47 ~~~~~~~~~~~~~~~~~----~-~Y~----~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---  114 (391)
T PRK08361         47 TPKNIKEAAKRALDEGW----T-HYT----PNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL---  114 (391)
T ss_pred             CCHHHHHHHHHHHhcCC----C-CCC----CCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc---
Confidence            46788888887765311    0 111    1123456666666665    4  567899999999999999999887   


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHH
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE  157 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~  157 (397)
                       ++|++|++++|+|.++...+...   |.+++.+|.+.  ++.+|++++++.++++++++++++|+||||.++|   +++
T Consensus       115 -~~g~~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~  190 (391)
T PRK08361        115 -EEGDEVIIPDPAFVCYVEDAKIA---EAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKA  190 (391)
T ss_pred             -CCCCEEEEcCCCCcccHHHHHHc---CCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHH
Confidence             78999999999999988776666   99999999875  3469999999999999999999999999999999   788


Q ss_pred             HHHHHHhcCcEEEEecccccCcc----ccccC--cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKI----DINIQ--NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY  229 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~----~~~~~--~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~  229 (397)
                      |+++|+++++++|+|++|+....    ...+.  ..+.++++.|++|.+|.+|  +|+++++++....+.....      
T Consensus       191 l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~------  264 (391)
T PRK08361        191 IADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHA------  264 (391)
T ss_pred             HHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHh------
Confidence            89999999999999999873221    11111  1246788999999777557  7999998765554432211      


Q ss_pred             cccCCCCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGES  305 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  305 (397)
                       +..+..+.....++..+++..  .+++++..+.+.++++.+.+.|++ ++++.+..+.+   +.++++.++.  .+..+
T Consensus       265 -~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~p~g---~~~~~~~l~~~~~~~~~  339 (391)
T PRK08361        265 -YIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE-MPHIKVFEPKG---AFYVFANIDETGMSSED  339 (391)
T ss_pred             -hhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHh-CCCCeecCCCE---EEEEEEECCCCCCCHHH
Confidence             001122222333333444321  124677888899999999999998 77776665533   3355666653  46778


Q ss_pred             HHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       306 ~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +...+.   +|.+.+|..|..                 ...++|||+++.  ++++++..+++|++++++
T Consensus       340 l~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~~--~~~~l~~al~~l~~~l~~  390 (391)
T PRK08361        340 FAEWLLEKARVVVIPGTAFGK-----------------AGEGYIRISYAT--SKEKLIEAMERMEKALEE  390 (391)
T ss_pred             HHHHHHHhCCEEEcCchhhCC-----------------CCCCEEEEEecC--CHHHHHHHHHHHHHHHhc
Confidence            877662   899999865532                 113789999985  678999999999888754

>KOG0259|consensus

Probab=99.98  E-value=7e-30  Score=221.57  Aligned_cols=328  Identities=16%  Similarity=0.142  Sum_probs=249.6

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      .++.+.+.+|+.+++++        .-..+|....+...+|++++++++      ..+++|++|+|-++|+++++.++. 
T Consensus        77 ~~ts~~a~~Av~~al~S--------gk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA-  147 (447)
T KOG0259|consen   77 FRTSQEAEQAVVDALRS--------GKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA-  147 (447)
T ss_pred             ccCCHHHHHHHHHHHhc--------CCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc-
Confidence            35678999999999987        333345556688899999999965      355689999999999999999998 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l  155 (397)
                         +||..|+++.|.|+-+.......   |++++.+++-  .++.+|++.+|++++++|.++++.+|+||+|.+++   +
T Consensus       148 ---~p~aNILlPrPGfp~Y~~~a~~~---~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL  221 (447)
T KOG0259|consen  148 ---NPGANILLPRPGFPLYDTRAIYS---GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHL  221 (447)
T ss_pred             ---CCCCceecCCCCCchHHHhhhhc---CceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHH
Confidence               89999999999999998776666   9999998874  57899999999999999999999999999999998   7


Q ss_pred             HHHHHHHHhcCcEEEEecccc---cCcccc-c---cCcccccEEEecccc-ccCCC-CceEEEEecCCCCccccccc-cC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQA---VGKIDI-N---IQNYKVDLMSFSAHK-IYGPK-GIGALYIRRNPRTRIEAQIH-GG  225 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~---~~~~~~-~---~~~~~~d~~~~s~~K-~~g~~-g~g~~~~~~~~~~~~~~~~~-~~  225 (397)
                      ++|+++|+++|++||.|++|.   +|.-++ .   +...-+.+.++|.+| |..|. .+||+++.+..-. ++.... .+
T Consensus       222 ~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD~~gv-f~~~~~~q~  300 (447)
T KOG0259|consen  222 KKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHDPRGV-FRDTKVVQG  300 (447)
T ss_pred             HHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEeccccc-ccchHHHHH
Confidence            899999999999999999997   333322 1   222235678899999 88773 3899998764321 111100 00


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-----
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-----  299 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----  299 (397)
                      ..........+++....|+-.-|+-.. +.+.+....++.+++..++.|++ +|++.....+..  +..+++.+.     
T Consensus       301 ~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~-IP~l~cp~kPeg--~mylmv~l~~s~~~  377 (447)
T KOG0259|consen  301 IKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKD-IPCLTCPVKPEG--CMYLMVKLNLSLFP  377 (447)
T ss_pred             HHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhc-CCCcccCcCCCc--ceEEEeccchhhhc
Confidence            000111233566666666766666543 35888899999999999999999 999885554443  334444332     


Q ss_pred             CC-ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         300 FI-EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       300 ~~-~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      ++ +..++...|.   .+.+-||..+..                   ++++|++++.  +.+.+++++++|++++.+..
T Consensus       378 ~~~dD~dFc~kL~~Eesv~~LPG~af~~-------------------~nw~Ri~i~~--~~~~leea~~Rik~Fc~RH~  435 (447)
T KOG0259|consen  378 DIEDDVDFCQKLAREESVICLPGQAFGL-------------------KNWLRIVITV--EEEMLEEAFSRIKEFCDRHS  435 (447)
T ss_pred             cccccHHHHHHHhhhcceEEeccccccC-------------------CCeEEEEEcc--ChHHHHHHHHHHHHHHHhhh
Confidence            22 3567777775   788888876654                   4999999985  78999999999999998887

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.98  E-value=8.6e-30  Score=245.24  Aligned_cols=333  Identities=18%  Similarity=0.145  Sum_probs=229.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAI   75 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l   75 (397)
                      |++++...|..+++++.+.+.......      ..|.......++|++++++++      +++++|++|+|+++|+.+++
T Consensus        82 ~~~~~~~~P~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~  155 (481)
T PTZ00377         82 DPSVSSLFPADVVARAKEYLNAIGGGT------GAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLL  155 (481)
T ss_pred             CccccccCCHHHHHHHHHHHHhCCCcc------cCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHH
Confidence            344455567888888877665422111      122333456777777777764      56789999999999999999


Q ss_pred             HHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcC------CceEEEEecccC
Q psy8850          76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNN  147 (397)
Q Consensus        76 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~  147 (397)
                      +++..   ++||+|+++.|+|+.+...+...   |.+++.+++++  ++.+|+++|++++++      +++++++.+|+|
T Consensus       156 ~~l~~---~~gD~Vlv~~P~y~~y~~~~~~~---g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~N  229 (481)
T PTZ00377        156 QLLIG---DPSDGVMIPIPQYPLYSAAITLL---GGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGN  229 (481)
T ss_pred             HHhcc---CCCCEEEECCCCchhHHHHHHHc---CCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCC
Confidence            98862   48999999999999999888877   99999999874  347899999999875      789998999999


Q ss_pred             ccccccc---HHHHHHHHHhcCcEEEEecccccCcc----c-ccc----Cccc-------ccEEEecccc-ccCCCC--c
Q psy8850         148 EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI----D-INI----QNYK-------VDLMSFSAHK-IYGPKG--I  205 (397)
Q Consensus       148 ~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~----~-~~~----~~~~-------~d~~~~s~~K-~~g~~g--~  205 (397)
                      |||.+++   +++|+++|++||++||+|++|.....    + ..+    ..+.       ..+++.|++| +++.+|  +
T Consensus       230 PTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRi  309 (481)
T PTZ00377        230 PTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRG  309 (481)
T ss_pred             CCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCce
Confidence            9999999   67899999999999999999973111    1 111    0111       2467789999 666445  7


Q ss_pred             eEEEE---ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q psy8850         206 GALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL----------ARIEMKEELKRILFLQKRLYNG  272 (397)
Q Consensus       206 g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~----------~~~~~~~~~~~~~~~~~~l~~~  272 (397)
                      |++++   +++..+.+.....       ... ..+.....++..+++.          +...+.+..++++++++.+.+.
T Consensus       310 G~~~~~~~p~~li~~l~~~~~-------~~~-~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~  381 (481)
T PTZ00377        310 GYFELTNIPPEVREQIYKLAS-------INL-CSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDE  381 (481)
T ss_pred             EEEEEeCCCHHHHHHHHHHhh-------eec-CCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88876   4444444433221       111 2344444444455531          2334555566788999999999


Q ss_pred             HhhhcCcEEEeCCCCCCCCceEEEEec--C----------C-ChHHHHHH-hC--CcEecccCccCCCCCChhhHHHhhC
Q psy8850         273 LMESIEEIYINGDMNNRIPHNLNISFN--F----------I-EGESLLMA-IK--DIAVSSGSACTSASLEPSYVLRALG  336 (397)
Q Consensus       273 l~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~-~~~~~~~~-l~--~i~~~~g~~~~~~~~~~~~~~~~~g  336 (397)
                      |++ ++++.+..+.+   +..+++.++  .          . +...+... +.  ||.+.+|..|...            
T Consensus       382 L~~-~~g~~~~~p~g---g~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~------------  445 (481)
T PTZ00377        382 LNK-IEGVSCQPVEG---AMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQK------------  445 (481)
T ss_pred             Hhc-CCCcEeecCCe---eEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCC------------
Confidence            998 77887775533   333343332  1          0 12233333 32  8999999766430            


Q ss_pred             CCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         337 CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       337 ~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                          .+.+++|++++  .+.+++++++++|.+++++..++
T Consensus       446 ----~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~~~~  479 (481)
T PTZ00377        446 ----PGTYHFRITIL--PPEEQIEEMVKKIKEFHESFMKK  479 (481)
T ss_pred             ----CCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHh
Confidence                11368999998  57899999999999998876654

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.98  E-value=7.6e-30  Score=241.52  Aligned_cols=319  Identities=13%  Similarity=0.107  Sum_probs=225.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------------CCCCcEEEeCChhHHHHHHH
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------------ADPREIIWTSGATESNNLAI   75 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~i~~~~g~t~a~~~~l   75 (397)
                      .+++.+.+++.+.+...   ... .|.    ......++|++++++++            +++++|++|+|+++|+.+++
T Consensus        50 ~p~~~~~~a~~~~~~~~---~~~-~Y~----~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~  121 (412)
T PTZ00433         50 LTPAIQTKALVEAVDSQ---ECN-GYP----PTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMAL  121 (412)
T ss_pred             CCCHHHHHHHHHHhhcC---CCC-CCC----CCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHH
Confidence            46888999988877641   011 121    12345667777777765            56788999999999999999


Q ss_pred             HHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCcccccc
Q psy8850          76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        76 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~  153 (397)
                      .++.    ++||+|+++.|+|+.+...+...   |.+++.+|.+.  ++.+|++++++++++++++|++++++||||.++
T Consensus       122 ~~~~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~  194 (412)
T PTZ00433        122 TALC----DEGDNILVPAPGFPHYETVCKAY---GIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNF  194 (412)
T ss_pred             HHhc----CCCCEEEEccCCcccHHHHHHHc---CCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCccc
Confidence            9887    79999999999999998887776   99999999863  457999999999988999999999999999998


Q ss_pred             c---HHHHHHHHHhcCcEEEEecccccCcc---c-cccCcc---cccEEEeccccccCCCC--ceEEEEe-cC-----CC
Q psy8850         154 P---ILEIGELCRSKGVIFHCDAAQAVGKI---D-INIQNY---KVDLMSFSAHKIYGPKG--IGALYIR-RN-----PR  215 (397)
Q Consensus       154 ~---l~~i~~l~~~~gi~livD~a~~~~~~---~-~~~~~~---~~d~~~~s~~K~~g~~g--~g~~~~~-~~-----~~  215 (397)
                      +   +++|+++|+++|++||+|++|.....   . ..+..+   ...+++.|++|.+|.+|  +|++++. +.     ..
T Consensus       195 s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~  274 (412)
T PTZ00433        195 SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFL  274 (412)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHH
Confidence            8   56778899999999999999873211   1 111111   23477899999665445  7888873 21     11


Q ss_pred             CccccccccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceE
Q psy8850         216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL  294 (397)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  294 (397)
                      ..+.....       . ....+.....++..++.. ....+++..++++++++.+.+.|++ ..++.+..+.+   +.++
T Consensus       275 ~~~~~~~~-------~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~g---g~f~  342 (412)
T PTZ00433        275 DGMKRLGM-------L-VCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE-CIGLSPTMPRG---SMFL  342 (412)
T ss_pred             HHHHHHhh-------c-cCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCCe---eEEE
Confidence            11111110       0 112333333434344442 2345777888999999999999987 55655444332   4455


Q ss_pred             EEEecC------CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850         295 NISFNF------IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL  365 (397)
Q Consensus       295 ~~~~~~------~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  365 (397)
                      ++.++.      .+..++.+.+.   ||.+.+|..|..                   .+++||+++.  .++++++.+++
T Consensus       343 ~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~--~~e~l~~al~~  401 (412)
T PTZ00433        343 MSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM-------------------PGFTRLTISR--PVEVLREAVER  401 (412)
T ss_pred             EEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC-------------------CCeEEEEecC--CHHHHHHHHHH
Confidence            666653      14567776653   899999875532                   2789999985  58899999999


Q ss_pred             HHHHHHHHH
Q psy8850         366 LKMKVKKLR  374 (397)
Q Consensus       366 l~~~~~~~~  374 (397)
                      |.+++..++
T Consensus       402 l~~~~~~~~  410 (412)
T PTZ00433        402 IKAFCERHK  410 (412)
T ss_pred             HHHHHHHhc
Confidence            999998765

>PLN00175 aminotransferase family protein; Provisional

Probab=99.98  E-value=1.5e-29  Score=238.90  Aligned_cols=324  Identities=16%  Similarity=0.144  Sum_probs=229.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCC-cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPR-EIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~-~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.+++++.+.+...    .. .|.......+..+.+.+.+.+.++  ++++ +|++|+|+++|+.+++.+++    +
T Consensus        67 ~~~~~~~~~~~~~~~~~----~~-~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~----~  137 (413)
T PLN00175         67 DGPDFVKEAAIQAIRDG----KN-QYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI----N  137 (413)
T ss_pred             CCCHHHHHHHHHHHhcC----CC-CcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC----C
Confidence            34778888888887641    11 232222223333334444444445  3555 69999999999999999887    7


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      +||+|++.+|.|+.+...+...   |.+++.++.+ +++.+|+++|++++.+++++|++++++||||.+++   +++|++
T Consensus       138 ~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~  214 (413)
T PLN00175        138 PGDEVILFAPFYDSYEATLSMA---GAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIAS  214 (413)
T ss_pred             CCCEEEEeCCCchhHHHHHHHc---CCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHH
Confidence            9999999999999998887776   9999999987 35689999999999989999999999999999998   567899


Q ss_pred             HHHhcCcEEEEecccccCcc---cc---ccCc-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccc
Q psy8850         161 LCRSKGVIFHCDAAQAVGKI---DI---NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGL  231 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~---~~---~~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
                      +|++||++||+|++|.....   +.   ++.. .+..+++.|++|.++.+|  +|++++++++...+.....       .
T Consensus       215 ~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~-------~  287 (413)
T PLN00175        215 LCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS-------F  287 (413)
T ss_pred             HHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHh-------h
Confidence            99999999999999974321   11   1111 245688899999666445  7999988766555433221       1


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CC-ChHHHHH
Q psy8850         232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FI-EGESLLM  308 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~  308 (397)
                      ...+.+.....++..+++.....+++.++.+.++++.+.+.|++ . ++.+..+.+   +.++++.+.  +. +..++..
T Consensus       288 ~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~g---~~f~~~~~~~~~~~~~~~~~~  362 (413)
T PLN00175        288 LTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKE-V-GFKVYPSSG---TYFVMVDHTPFGFENDIAFCE  362 (413)
T ss_pred             ccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe---eEEEEEeccccCCCCHHHHHH
Confidence            11233334444444666543445788899999999999999998 4 666554432   344566653  23 3567777


Q ss_pred             HhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         309 AIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       309 ~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      .|.   ||.+.||..|...              ...+.++|||+++.  +++++++.+++|+++++
T Consensus       363 ~ll~~~gV~v~pg~~F~~~--------------~~~~~~~iRls~~~--~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        363 YLIEEVGVAAIPPSVFYLN--------------PEDGKNLVRFAFCK--DEETLRAAVERMKTKLK  412 (413)
T ss_pred             HHHHhCCEEEeCchHhCCC--------------CCCCCCEEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence            663   8999999765420              01123789999984  79999999999998765

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.98  E-value=1.6e-29  Score=234.43  Aligned_cols=308  Identities=17%  Similarity=0.143  Sum_probs=222.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++|+.+++++.+.+....  . . .|.     .....++++.+++++++++++|++|+|+++++..++.++.    ++||
T Consensus        35 ~~p~~~~~a~~~~~~~~~--~-~-~y~-----~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~----~~gd  101 (351)
T PRK14807         35 ELPEEVIKNIQEIVKSSQ--V-N-IYP-----DPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI----NKGD  101 (351)
T ss_pred             CCCHHHHHHHHHHhhcCc--c-c-CCC-----CccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc----CCCC
Confidence            578999999988775311  0 0 111     1234789999999999998999999999999999999887    7999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKG  166 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g  166 (397)
                      +|++++|.|+.+...+...   |.+++.++.++++.+|++++++++++ +++++++++++||||.+++.+++.++|++++
T Consensus       102 ~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~  178 (351)
T PRK14807        102 VVIYPHPSFAMYSVYSKIA---GAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSR  178 (351)
T ss_pred             EEEEeCCChHHHHHHHHHc---CCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC
Confidence            9999999998877666665   99999999987778999999999975 8999999999999999999999999999988


Q ss_pred             cEEEEecccccCc--cccc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHH
Q psy8850         167 VIFHCDAAQAVGK--IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQI  241 (397)
Q Consensus       167 i~livD~a~~~~~--~~~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (397)
                      .++|+|++|....  ...+ ....+..+++.|++|.+|.+|  +|+++.+++....+......         ...+....
T Consensus       179 ~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~---------~~~~~~~q  249 (351)
T PRK14807        179 GIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP---------YNINSLSQ  249 (351)
T ss_pred             CEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccCC---------CCcCHHHH
Confidence            8999999996221  1111 112245688999999666445  78888876655544332111         11223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccC
Q psy8850         242 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGS  319 (397)
Q Consensus       242 ~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~  319 (397)
                      .++..+++.  ..+.+..+++.++++++.+.|++ ++++.+.. ++   +.++++.++  +..++.+.|.  ||.+.+..
T Consensus       250 ~~~~~~l~~--~~~~~~~~~~~~~r~~l~~~l~~-~~g~~~~~-~~---~~~~~i~~~--~~~~~~~~l~~~gV~v~~~~  320 (351)
T PRK14807        250 VIALKVLRT--GVLKERVNYILNERERLIKELSK-IPGIKVYP-SK---TNFILVKFK--DADYVYQGLLERGILVRDFS  320 (351)
T ss_pred             HHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHh-CCCcEECc-CC---ccEEEEEcC--CHHHHHHHHHHCCEEEEECC
Confidence            333344432  24566667788888899999987 77876543 22   345566665  3556666665  88886532


Q ss_pred             ccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ...                  ...+++||+++   +.++.+++++.|++++
T Consensus       321 ~~~------------------~~~~~iRis~~---~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        321 KVE------------------GLEGALRITVS---SCEANDYLINGLKELL  350 (351)
T ss_pred             CCC------------------CCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence            110                  11378999997   5789999999998753

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.2e-29  Score=238.22  Aligned_cols=290  Identities=14%  Similarity=0.087  Sum_probs=213.2

Q ss_pred             HHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEe
Q psy8850          43 IEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL  116 (397)
Q Consensus        43 ~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v  116 (397)
                      ..++++.+++++      ++++++|++|+|+++|+.+++.++.    ++||+|++++|+|+.+...+..+   |.+++.+
T Consensus        68 ~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~vlv~~p~y~~~~~~~~~~---g~~~~~~  140 (384)
T PRK06348         68 DVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL----DPGDEVIIHEPYFTPYKDQIEMV---GGKPIIL  140 (384)
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCCcchHHHHHHc---CCEEEEe
Confidence            445666666665      3577899999999999999999987    79999999999999999888877   8899888


Q ss_pred             ccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc---ccc---cC
Q psy8850         117 KPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DIN---IQ  185 (397)
Q Consensus       117 ~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~---~~~---~~  185 (397)
                      |..  +++.+|++++++++++++++|++++|+||||.+++   +++|.++|++||++||+|++|.....   ...   +.
T Consensus       141 ~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  220 (384)
T PRK06348        141 ETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLA  220 (384)
T ss_pred             cCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcC
Confidence            874  34568999999999889999999999999999998   56788889999999999999873211   111   11


Q ss_pred             c-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         186 N-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI  262 (397)
Q Consensus       186 ~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~  262 (397)
                      . .+..+++.|++|.+|.+|  +|+++++++....+......      ... +.+.....++..+++.....+++.++.+
T Consensus       221 ~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~~------~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~  293 (384)
T PRK06348        221 GMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINEG------ICF-SAPTISQRAAIYALKHRDTIVPLIKEEF  293 (384)
T ss_pred             CCcCcEEEEecchhccCCccccceeeecCHHHHHHHHHHHHh------ccC-CCCHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            1 235688899999666334  79999886655544433211      011 2333444444456654444567788888


Q ss_pred             HHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCC
Q psy8850         263 LFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGC  337 (397)
Q Consensus       263 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~  337 (397)
                      +++++++.+.|++ ++++.+..+.+   +..+++.++  +.+..++...+.   ||.+.+|..|..              
T Consensus       294 ~~r~~~~~~~L~~-~~~~~~~~p~g---g~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~--------------  355 (384)
T PRK06348        294 QKRLEYAYKRIES-IPNLSLHPPKG---SIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGE--------------  355 (384)
T ss_pred             HHHHHHHHHHHhc-CCCceeccCCe---eEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhcc--------------
Confidence            9999999999988 77766554433   345567775  356777777652   899999976532              


Q ss_pred             CccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         338 NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       338 ~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                         ..+++|||+++  .++++++..+++|+++
T Consensus       356 ---~~~~~iRi~~~--~~~~~l~~al~~l~~~  382 (384)
T PRK06348        356 ---SGEGYIRLACT--VGIEVLEEAFNRIEKM  382 (384)
T ss_pred             ---CCCCeEEEEec--CCHHHHHHHHHHHHhh
Confidence               11378999997  4789999999888754

>PRK07682 hypothetical protein; Validated

Probab=99.97  E-value=1.3e-29  Score=237.76  Aligned_cols=318  Identities=17%  Similarity=0.147  Sum_probs=226.6

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCChhHHHHHHHHHhHhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~--~~~-~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +++.+.+++.+.+....    . .|...    ....++|+++++++    |.  +++ +|++|+|+++|+.+++.+++  
T Consensus        34 ~~~~~~~~~~~~~~~~~----~-~Y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~--  102 (378)
T PRK07682         34 TPWNVREASIRSLEQGY----T-SYTAN----AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII--  102 (378)
T ss_pred             CCHHHHHHHHHHHhcCC----C-CCCCC----CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC--
Confidence            45667888877664311    1 12211    23455555555555    44  444 79999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||.|++.+|+|+.+...+...   |.+++.++.+  +++.+|++++++++.++++++++++|+||||.+++   ++
T Consensus       103 --~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~  177 (378)
T PRK07682        103 --NPGDEVLIVEPSFVSYAPLVTLA---GGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELE  177 (378)
T ss_pred             --CCCCEEEEeCCCchhhHHHHHHc---CCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHH
Confidence              79999999999999888777766   8898888875  35679999999999989999999999999999988   67


Q ss_pred             HHHHHHHhcCcEEEEecccccCccc------cccCc-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKID------INIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~------~~~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                      +|+++|++||+++|+|++|+.....      ..+.. .+..+++.|++|.+|.+|  +|+++++++..+.+.....    
T Consensus       178 ~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~----  253 (378)
T PRK07682        178 EIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQ----  253 (378)
T ss_pred             HHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHH----
Confidence            8899999999999999998833211      01111 145688999999776556  8999998776665543321    


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGES  305 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  305 (397)
                         +.....+.....+...+++.....+++.+++++++++.+.+.|++ + ++.+..+.+   +..++..++  ..+..+
T Consensus       254 ---~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~p~g---~~~~~~~~~~~~~~~~~  325 (378)
T PRK07682        254 ---YSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNE-I-GLTCHVPGG---AFYAFPSISSTGLSSEE  325 (378)
T ss_pred             ---hhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-C-CCccCCCCe---eEEEEEeccCCCCCHHH
Confidence               111123333334444555433335677888999999999999998 4 655544433   334455553  346677


Q ss_pred             HHHHh--C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       306 ~~~~l--~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +...+  + ||.+.+|..|..                 ...+++||+++.  +.+++++.+++|+++++++
T Consensus       326 ~~~~ll~~~gv~v~pg~~f~~-----------------~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~  377 (378)
T PRK07682        326 FAEQLLLEEKVAVVPGSVFGE-----------------SGEGFIRCSYAT--SLEQLQEAMKRMKRFVENK  377 (378)
T ss_pred             HHHHHHHhCCEEEcCchhhCc-----------------CCCCeEEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence            87664  2 899999865532                 113889999985  6899999999999988654

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.97  E-value=2.1e-29  Score=237.95  Aligned_cols=318  Identities=16%  Similarity=0.181  Sum_probs=230.4

Q ss_pred             CCHHHHHHHHHHHhhc-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           9 IDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++|++++++.+++... .+++.+ .+..+.  .+...++++.+++++|.+  ++++++|+++|+..++.++.    ++||
T Consensus        53 ~~~~v~~~~~~~~~~~~~~~~~s-~~~~G~--~~~~~~le~~ia~~~g~~--~~ii~~~~~~a~~~~~~~l~----~~gd  123 (393)
T TIGR01822        53 SHPDLIQAAKDALDEHGFGMSSV-RFICGT--QDIHKELEAKIAAFLGTE--DTILYASCFDANGGLFETLL----GAED  123 (393)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCc-CcccCC--hHHHHHHHHHHHHHhCCC--cEEEECchHHHHHHHHHHhC----CCCC
Confidence            4789999999998774 345555 443332  567788999999999985  56777899999999998886    7999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGEL  161 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l  161 (397)
                      +|++++++|+++...+...   +.+...++     .+|++++++++++      ++++|++++++|+||.+.|+++|+++
T Consensus       124 ~vi~~~~~~~s~~~~~~~~---~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~l  195 (393)
T TIGR01822       124 AIISDALNHASIIDGVRLC---KAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDL  195 (393)
T ss_pred             EEEEeccccHHHHHHHHhc---CCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHH
Confidence            9999999999998887665   44443333     3689999998874      78899999999999999999999999


Q ss_pred             HHhcCcEEEEecccccCcccc---------ccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccc
Q psy8850         162 CRSKGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL  231 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~~~---------~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
                      |++||+++|+|++|+.|....         +.. .++|++++|+|| +.|+. .|+++++++..+.+......    . .
T Consensus       196 a~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r-~G~~~~~~~~~~~l~~~~~~----~-~  268 (393)
T TIGR01822       196 ADKYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGAS-GGFTTARKEVVELLRQRSRP----Y-L  268 (393)
T ss_pred             HHHcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCCC-cEEEEeCHHHHHHHHHhCcc----c-e
Confidence            999999999999998665321         111 257899999999 55554 59998887665555332111    0 1


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHh
Q psy8850         232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI  310 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  310 (397)
                      ..++.+...+.+..++++.+. ..++..+++.++++++.+.|++ . ++.+..+.    ..++.+.+.+ .+..++...|
T Consensus       269 ~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~i~~~~~~~~~~l~~~L  341 (393)
T TIGR01822       269 FSNSLPPAVVGASIKVLEMLE-ASNELRDRLWANTRYFRERMEA-A-GFDIKPAD----HPIIPVMLYDAVLAQRFARRL  341 (393)
T ss_pred             ecCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH-c-CCCCCCCC----CCEEEEEeCCHHHHHHHHHHH
Confidence            123444455555667777653 4567788999999999999988 3 65544221    2344455442 3356677776


Q ss_pred             C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         311 K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       311 ~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .  ||.+. +..+..               .+.....+|++++.+++++||++++++|+++.+++
T Consensus       342 ~~~gI~v~-~~~~~~---------------~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~  390 (393)
T TIGR01822       342 LEEGIYVT-GFFYPV---------------VPKGQARIRVQISAAHTEEQLDRAVEAFTRIGREL  390 (393)
T ss_pred             HHCCeeEe-eeCCCC---------------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            5  88776 432211               01122569999999999999999999999987654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=1.2e-29  Score=236.48  Aligned_cols=304  Identities=17%  Similarity=0.140  Sum_probs=226.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .+++.+.+++.+.+......|           .....++++++++++++++++|++|+|+++++..++.++.    ++||
T Consensus        42 ~~~~~v~~a~~~~~~~~~~~p-----------~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd  106 (359)
T PRK03158         42 GPSPKVKEAIAAHLDELALYP-----------DGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL----NPGT  106 (359)
T ss_pred             CCCHHHHHHHHHHHHHhhcCC-----------CCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh----CCCC
Confidence            367889999888765421111           1246789999999999988899999999999999998887    7899


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh--c
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--K  165 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~--~  165 (397)
                      +|++++|+|+.+...+...   |.++..+|.+ ++.+|+++++++++++++++++++|+||||.++|.+++.++++.  +
T Consensus       107 ~v~~~~p~y~~~~~~~~~~---g~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~  182 (359)
T PRK03158        107 NTVMAEPTFSQYRHNAIIE---GAEVREVPLK-DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPS  182 (359)
T ss_pred             EEEEcCCCHHHHHHHHHHc---CCeEEEEecC-CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC
Confidence            9999999999987776665   9999999987 56789999999998899999999999999999999998888877  5


Q ss_pred             CcEEEEecccccCcc----cc--c-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         166 GVIFHCDAAQAVGKI----DI--N-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       166 gi~livD~a~~~~~~----~~--~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      |+++|+|++|.....    +.  . ....+..+++.|++|.+|.+|  +|+++++++..+.+......        . ..
T Consensus       183 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~--------~-~~  253 (359)
T PRK03158        183 HVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPP--------F-NT  253 (359)
T ss_pred             CcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcCC--------C-CC
Confidence            999999999863221    11  1 112246788899999777555  59999887665555433211        1 23


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcE
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIA  314 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~  314 (397)
                      +.....++.++++. .+.+++..+.++++++++.+.|++ . ++.+..+ .   +.++++.++ .+..++.+.|.  ||.
T Consensus       254 ~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~-~---g~~i~~~~~-~~~~~~~~~l~~~gv~  325 (359)
T PRK03158        254 TRIAQYAAIAALED-QAFLKECVEKNAEGLEQYYAFCKE-Y-GLFYYPS-Q---TNFIFVDTG-RDANELFEALLKKGYI  325 (359)
T ss_pred             CHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeCCC-c---CcEEEEECC-CCHHHHHHHHHHCCeE
Confidence            44444444455542 234566777788888899999988 4 6655432 2   345566654 35667777765  999


Q ss_pred             ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +.+|..|..                   ++++||+++   +.+++++++++|+++
T Consensus       326 v~~g~~f~~-------------------~~~iRi~~~---~~~~~~~l~~al~~~  358 (359)
T PRK03158        326 VRSGAALGF-------------------PTGVRITIG---LKEQNDKIIELLKEL  358 (359)
T ss_pred             EeeCCCCCC-------------------CCeEEEecC---CHHHHHHHHHHHHHh
Confidence            999865431                   278999987   699999999999875

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.97  E-value=9.7e-30  Score=239.11  Aligned_cols=315  Identities=15%  Similarity=0.113  Sum_probs=222.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~--~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++++.+.+++.+.+....   .. .|..    .....++|+.+++++    |.  +++ +|++|+|+++++..++..+. 
T Consensus        42 ~~~~~~~~~~~~~~~~~~---~~-~Y~~----~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~-  112 (383)
T TIGR03540        42 PTPKHIVEALCKAAENPE---NH-RYPS----YEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV-  112 (383)
T ss_pred             CCCHHHHHHHHHHHhCCC---CC-CCCC----CCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhC-
Confidence            357788888888765310   00 1211    123455566666554    44  444 58899999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l  155 (397)
                         ++||+|++++|+|+.+...++.+   |.+++.+|.+.+  ..+|++++++++.+++++|++++|+||||.+++   +
T Consensus       113 ---~~gd~vlv~~P~y~~~~~~~~~~---G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~  186 (383)
T TIGR03540       113 ---NPGDIVLVPDPGYPVYRIGTLFA---GGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFF  186 (383)
T ss_pred             ---CCCCEEEEeCCCCcchHHHHHhc---CCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHH
Confidence               79999999999999998887776   999999998743  457999999999889999999999999999999   5


Q ss_pred             HHHHHHHHhcCcEEEEecccccCc----cccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      ++|+++|++||+++|+|++|+...    .+..+..    .+..+++.|++|.+|.+|  +|+++.+++....+...... 
T Consensus       187 ~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~-  265 (383)
T TIGR03540       187 KELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTN-  265 (383)
T ss_pred             HHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHHHHHHHHHHHHh-
Confidence            788999999999999999997221    1122211    134577899999777666  89998877655554432211 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChH
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGE  304 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  304 (397)
                           ...+. +.....+...+++...+++++..+.++++++.+.+.|++ . ++.+..+.+   +..+++.++ +.+..
T Consensus       266 -----~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~---~~~~~~~l~~~~~~~  334 (383)
T TIGR03540       266 -----VDSGV-FQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKK-I-GIDVEKPKA---TFYVWVPVPEGYTSA  334 (383)
T ss_pred             -----cccCC-ChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCEecCCCc---ceEEEEECCCCCCHH
Confidence                 11122 223333444555443445777888899999999999998 4 676664433   344566765 34667


Q ss_pred             HHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         305 SLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       305 ~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      ++...+ .  ||.+.+|..|..                 ...+++||+++.  +++++++.++.|.+
T Consensus       335 ~~~~~ll~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~l~~~l~~l~~  382 (383)
T TIGR03540       335 EFAARLLEETGVVVTPGVGFGE-----------------YGEGYIRISLTV--PDERLEEAVARIKK  382 (383)
T ss_pred             HHHHHHHHHCCEEEecchhhCc-----------------cCCCeEEEEecC--CHHHHHHHHHHHhh
Confidence            787775 2  899999976542                 013789999974  67888888777753

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09105 putative aminotransferase; Provisional

Probab=99.97  E-value=2.2e-29  Score=234.50  Aligned_cols=309  Identities=13%  Similarity=0.105  Sum_probs=224.4

Q ss_pred             CCCCCC-CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           2 DYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         2 ~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      |.+.+. ++|+.+++++.+......      .|.  +  . ...++++.+++++|+++++|++|+|+++++.+++.++. 
T Consensus        49 ~~~~~~~~~~~~~~~a~~~~~~~~~------~Y~--~--~-~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~-  116 (370)
T PRK09105         49 NANECPLGPSPAARDAAARSAALSG------RYD--L--E-LEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFT-  116 (370)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhc------CCC--C--c-hHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHc-
Confidence            444443 568899999988765311      121  1  1 26789999999999999999999999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                         ++||+|++++|+|+.+...+...   |.+++.+|.++++.+|++++++. .++++++++++|+||||.+++.+++.+
T Consensus       117 ---~~gd~Vli~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~  189 (370)
T PRK09105        117 ---SPTAGLVTADPTYEAGWRAADAQ---GAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEW  189 (370)
T ss_pred             ---CCCCEEEEeCCChHHHHHHHHHc---CCeEEEecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHH
Confidence               78999999999999998877766   99999999987788999999887 567899999999999999999888877


Q ss_pred             HHHh--cCcEEEEecccccCc-cc--cccCcc-cccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccccc
Q psy8850         161 LCRS--KGVIFHCDAAQAVGK-ID--INIQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLR  232 (397)
Q Consensus       161 l~~~--~gi~livD~a~~~~~-~~--~~~~~~-~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (397)
                      +++.  +|+++|+|++|.... .+  .++... ...+++.|++|.+|.+|  +|+++++++..+.+...  .        
T Consensus       190 l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~--~--------  259 (370)
T PRK09105        190 LLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF--G--------  259 (370)
T ss_pred             HHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc--C--------
Confidence            7653  489999999995221 11  122111 23467789999887667  89999887665555443  1        


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-
Q psy8850         233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-  311 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  311 (397)
                      ....+.....+..++++. .+.++...+++.++++++.+.|++ + ++.+..+.    .+++.+.++ .+..++.+.|. 
T Consensus       260 ~~~~~~~~~~aa~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~~----~~f~~~~~~-~~~~~l~~~L~~  331 (370)
T PRK09105        260 HNPLPVPAAAAGLASLRD-PKLVPQRRAENAAVREDTIAWLKK-K-GYKCTPSQ----ANCFMVDVK-RPAKAVADAMAK  331 (370)
T ss_pred             CCCcCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCCcCCCC----CcEEEEeCC-CCHHHHHHHHHH
Confidence            112333333334345543 345677788899999999999998 4 65554332    334445554 45667777775 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                       ||.+  |..+..                  ..+++||+++   +++++++++++|++++
T Consensus       332 ~gI~v--~~~~~~------------------~~~~~Ris~~---~~~~~~~l~~al~~~~  368 (370)
T PRK09105        332 QGVFI--GRSWPI------------------WPNWVRVTVG---SEEEMAAFRSAFAKVM  368 (370)
T ss_pred             CCcEE--ecCCCC------------------CCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence             7777  222210                  1378999987   5889999999998765

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.3e-29  Score=239.29  Aligned_cols=318  Identities=14%  Similarity=0.124  Sum_probs=228.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++.+.+....    . .|..    ......+++.+++++      ++++++|++|+|+++|+..++.++.  
T Consensus        44 ~~~~~~~~~~~~~~~~~~----~-~Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~--  112 (393)
T PRK05764         44 DTPEHIKEAAIEALDDGK----T-KYTP----AAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALL--  112 (393)
T ss_pred             CCCHHHHHHHHHHHhcCC----C-CcCC----CCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhc--
Confidence            346788888888775411    1 1211    223566777777766      3567789999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++|+.|++++++|..+...+...   |.+++.++.+.  ++.+|++++++++.++++++++++++||||.++|   ++
T Consensus       113 --~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~  187 (393)
T PRK05764        113 --DPGDEVIIPAPYWVSYPEMVKLA---GGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELE  187 (393)
T ss_pred             --CCCCEEEecCCCCcchHHHHHHc---CCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHH
Confidence              78999999999999988777666   99999999873  4568999999999889999999999999999987   67


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc------cc-cc--CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI------DI-NI--QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~------~~-~~--~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      +|+++|++||+++++|++|+....      +. .+  ...+.++++.|++|.+|.+|  +|+++.+++..+.+...... 
T Consensus       188 ~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~-  266 (393)
T PRK05764        188 AIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSH-  266 (393)
T ss_pred             HHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHhh-
Confidence            889999999999999999873221      11 11  12246789999999767556  78888876655554433211 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC----
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI----  301 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  301 (397)
                            .....+.....++..+++...+.+++..+++.++++.+.+.|++ ++++.+..+.+   +..+++.++..    
T Consensus       267 ------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~g---~~~~~~~~~~~~~~~  336 (393)
T PRK05764        267 ------STSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNE-IPGLECPKPEG---AFYVFPNVSKLLGKS  336 (393)
T ss_pred             ------cccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhh-CCCCcccCCCc---ceEEEEecccccccc
Confidence                  11123333334444555422345677888888999999999998 76777665432   34455565532    


Q ss_pred             --ChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         302 --EGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       302 --~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                        ++.++...+ .  ||.+.+|..|..                   .+++||+++.  +++++++++++|.+++++.
T Consensus       337 ~~~~~~~~~~l~~~~gi~v~~g~~f~~-------------------~~~vRis~~~--~~~~~~~~i~~l~~~~~~~  392 (393)
T PRK05764        337 ITDSLEFAEALLEEAGVAVVPGIAFGA-------------------PGYVRLSYAT--SLEDLEEGLERIERFLESL  392 (393)
T ss_pred             cCCHHHHHHHHHHhCCEEEccccccCC-------------------CCEEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence              135666555 2  899998865532                   3899999985  7999999999999988754

>KOG0257|consensus

Probab=99.97  E-value=3.7e-30  Score=227.24  Aligned_cols=269  Identities=17%  Similarity=0.166  Sum_probs=210.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC---CCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA---DPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.|.+++++....-.   .. +|..++..++....+++++++++|.   +.++|++|.|+.+|+..++++++    +
T Consensus        44 ~~P~fv~ea~~~~~~~~~---~~-qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~----~  115 (420)
T KOG0257|consen   44 PPPKFVTEAAKNAAKEPS---TN-QYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL----N  115 (420)
T ss_pred             CCcHHHHHHHHHHhccch---hc-cccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc----C
Confidence            678899999998876521   22 6777888889999999999998884   55679999999999999999999    8


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--------CCCCCCHHHHHHHhcCCceEEEEecccCccccccc--
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--------NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--  154 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--------~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~--  154 (397)
                      +||+|++.+|.|+++.....++   |.+++.++..        +++.+|.+++|.+++++|++|++++||||||.+.+  
T Consensus       116 ~GDeVii~eP~fd~Y~~~~~ma---G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsRe  192 (420)
T KOG0257|consen  116 PGDEVIVFEPFFDCYIPQVVMA---GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSRE  192 (420)
T ss_pred             CCCEEEEecCcchhhhhHHhhc---CCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHH
Confidence            9999999999999999999999   8888888876        35789999999999999999999999999999998  


Q ss_pred             -HHHHHHHHHhcCcEEEEecccccCccc----c----ccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccc
Q psy8850         155 -ILEIGELCRSKGVIFHCDAAQAVGKID----I----NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH  223 (397)
Q Consensus       155 -l~~i~~l~~~~gi~livD~a~~~~~~~----~----~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~  223 (397)
                       +++|+++|++||+++|.|++|......    .    ....+...+-++|++|.+|..|  +|++++++.+.....+...
T Consensus       193 eLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~  272 (420)
T KOG0257|consen  193 ELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQ  272 (420)
T ss_pred             HHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHHHhh
Confidence             788999999999999999998732211    1    1223357788999999888777  8999997666665554432


Q ss_pred             cCCccccccCCCCchhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEE
Q psy8850         224 GGGHEYGLRSGTLATHQIVGMGEAFRLAR--------IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN  295 (397)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~--------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  295 (397)
                      .      +....+ ++...+..+++..-.        ..+..+.+.++++++.|.+.|.+ + |+.+..+++   .+.++
T Consensus       273 ~------~~~~~~-Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~-l-g~~v~~p~g---ayyl~  340 (420)
T KOG0257|consen  273 N------FVFTCP-TPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEE-L-GLKVTGPEG---AYYLW  340 (420)
T ss_pred             c------cccccC-cHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHh-c-CCccccCCC---ceEEE
Confidence            2      112222 222222223333222        12455889999999999999999 5 888888766   56667


Q ss_pred             EEec
Q psy8850         296 ISFN  299 (397)
Q Consensus       296 ~~~~  299 (397)
                      ..|.
T Consensus       341 adfs  344 (420)
T KOG0257|consen  341 ADFS  344 (420)
T ss_pred             Eecc
Confidence            7766

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.97  E-value=7.9e-30  Score=240.00  Aligned_cols=316  Identities=13%  Similarity=0.111  Sum_probs=221.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++++.+.+++.+.+....      .  .+|.......++|+++++++    |  ++++ +|++|+|+++|+.+++.+++ 
T Consensus        43 ~~~~~~~~~~~~~~~~~~------~--~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~-  113 (388)
T PRK07366         43 PAPAHALEAIAQSLHDPS------T--HGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVL-  113 (388)
T ss_pred             CCCHHHHHHHHHHHhCcc------c--CCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhC-
Confidence            457888888887764310      1  11111234456777777766    4  5677 69999999999999999888 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCcccccccH---
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---  155 (397)
                         ++||+|++.+|+|+.+...+...   |.+++.+|.+.+  ..+|++++++.+.++++++++++||||||.+++.   
T Consensus       114 ---~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~  187 (388)
T PRK07366        114 ---NPGDFALLLDPGYPSHAGGVYLA---GGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFF  187 (388)
T ss_pred             ---CCCCEEEEcCCCCcchHHHHHhc---CCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHH
Confidence               79999999999999998888877   999999999743  4578889988888889999999999999999995   


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc-----ccccCcc----cccEEEeccccccCCCC--ceEEEEecCCCCcccccccc
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG  224 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~----~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~  224 (397)
                      ++|+++|++||++||+|++|.-...     ...+...    ...+++.|++|.+|.+|  +|+++.++++.+.+......
T Consensus       188 ~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~~~~  267 (388)
T PRK07366        188 QEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQVKAV  267 (388)
T ss_pred             HHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHHHHHHhh
Confidence            5678899999999999999872211     1112111    23477899999766445  79998877665555433211


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC---
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---  301 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  301 (397)
                            ...++.+.....++ +++....+.+++.++.++++++++.+.|++ + ++.+..+.+   +.++++.++..   
T Consensus       268 ------~~~~~~~~~~~~a~-~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~-~-~~~~~~p~~---g~f~~~~~~~~~~~  335 (388)
T PRK07366        268 ------VDFNQYRGILNGAI-AALTGPQATVQQTVQIFRQRRDAFINALHQ-I-GWPVPLPEA---TMYVWAKLPEPWQG  335 (388)
T ss_pred             ------cccCCCHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCe---eEEEEEECCcccCC
Confidence                  11112222222222 344322346788889999999999999988 4 554433322   55667777642   


Q ss_pred             ChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       302 ~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +..++...+ .  ||.+.+|..|..                 ...++|||+++.  +.+++++.+++|.++
T Consensus       336 ~~~~~~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~~--~~~~l~~~l~rl~~~  387 (388)
T PRK07366        336 NSVEFCTQLVAQTGVAASPGSGFGK-----------------SGEGYVRFALVH--DPDILEEAVERIAAF  387 (388)
T ss_pred             CHHHHHHHHHHhCCEEEeCchHhCc-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHh
Confidence            356676655 3  899999865532                 113789999984  689999999999865

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.97  E-value=1.7e-29  Score=238.63  Aligned_cols=322  Identities=14%  Similarity=0.088  Sum_probs=227.0

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-----CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-----ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      .++++.+.+++.+.+....        ..+|.......+++++++++++     +++++|++|+|+++|+.+++.++.  
T Consensus        47 ~~~~~~~~~~~~~~~~~~~--------~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--  116 (401)
T TIGR01264        47 LPTDPEVMQAMKDSLDSGK--------YNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALA--  116 (401)
T ss_pred             CCCCHHHHHHHHHHHhccC--------CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhC--
Confidence            3567889999888775411        1112222345778888888887     677889999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++|++|++++|+|+.+...+...   |.+++.++++.  ++.+|++.+++.+.++++++++++++||||.+++   ++
T Consensus       117 --~~gd~v~i~~P~y~~~~~~~~~~---g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~  191 (401)
T TIGR01264       117 --NAGQNILVPRPGFPLYETLAESM---GIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLE  191 (401)
T ss_pred             --CCCCEEEEeCCCChhHHHHHHHc---CCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHH
Confidence              78999999999999887776666   99999988753  4679999999999888999999999999999987   67


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc----ccccCcc---cccEEEeccccccCCCC--ceEEEEecCC--CCccccccccC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI----DINIQNY---KVDLMSFSAHKIYGPKG--IGALYIRRNP--RTRIEAQIHGG  225 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~---~~d~~~~s~~K~~g~~g--~g~~~~~~~~--~~~~~~~~~~~  225 (397)
                      +|+++|+++|++||+|++|.....    ...+..+   ...+++.|++|.++.+|  +|++++++..  ...+...+...
T Consensus       192 ~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~  271 (401)
T TIGR01264       192 EILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKL  271 (401)
T ss_pred             HHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHH
Confidence            789999999999999999873211    1111111   12478899999666556  7888876421  11111100000


Q ss_pred             CccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC----
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF----  300 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----  300 (397)
                         . ......+.....++..+++. ..+.+++..+++.++++++.+.|++ ++++.+..+.+   +.++++.++.    
T Consensus       272 ---~-~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~~---g~f~~~~~~~~~~~  343 (401)
T TIGR01264       272 ---S-QRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAA-VPGLRPVMPSG---AMYMMVGIEMEHFP  343 (401)
T ss_pred             ---h-hccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCe---eeEEEEEecccccC
Confidence               0 00112333444444455542 2345778888999999999999998 76655443333   4566666542    


Q ss_pred             --CChHHHHHHh--C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         301 --IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       301 --~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                        .+..++.+.+  + ||.+.+|..|..                   .+++||+++.  +++++++.+++|.+++++
T Consensus       344 ~~~~~~~~~~~l~~~~gI~v~pg~~f~~-------------------~~~iRis~~~--~~~~l~~~l~rl~~~~~~  399 (401)
T TIGR01264       344 EFKNDVEFTERLVAEQSVFCLPGSCFEY-------------------PGFFRVVLTV--PVVMMEEACSRIQEFCER  399 (401)
T ss_pred             CCCCHHHHHHHHHHhCCEEEeCchhcCC-------------------CCeEEEEEcC--CHHHHHHHHHHHHHHHhc
Confidence              2356666665  2 899999865432                   2789999985  689999999999988764

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PLN02656 tyrosine transaminase

Probab=99.97  E-value=1.7e-29  Score=238.80  Aligned_cols=321  Identities=14%  Similarity=0.132  Sum_probs=225.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      .++|+.+++++.+.+....        ..+|.......+++++++++++      +++++|++|+|+++|+.+++.++. 
T Consensus        47 ~~~~~~~~~~~~~~~~~~~--------~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-  117 (409)
T PLN02656         47 FHTTHVAQEAVVDALQSNK--------FNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA-  117 (409)
T ss_pred             CCCCHHHHHHHHHHHhcCC--------CCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh-
Confidence            4678999999988876411        0111122345667777777763      567789999999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l  155 (397)
                         ++||+|++++|+|+.+.......   |.+++.+|++.  ++.+|+++++++++++++++++++|+||||.+++   +
T Consensus       118 ---~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~  191 (409)
T PLN02656        118 ---RPGANILLPRPGFPIYELCAAFR---HLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHL  191 (409)
T ss_pred             ---CCCCeEEEeCCCCCcHHHHHHHc---CCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHH
Confidence               79999999999999887666665   99999999853  4578999999999989999999999999999986   6


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc----ccc---cCcccccEEEeccccccCCCC--ceEEEEec--------CCCCcc
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI----DIN---IQNYKVDLMSFSAHKIYGPKG--IGALYIRR--------NPRTRI  218 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~----~~~---~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~--------~~~~~~  218 (397)
                      ++|+++|++||++||+|++|+....    ...   +......+++.|++|.++.+|  +|++++++        +....+
T Consensus       192 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~  271 (409)
T PLN02656        192 KKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERI  271 (409)
T ss_pred             HHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHH
Confidence            7889999999999999999973211    111   111234688899999655545  78888852        222222


Q ss_pred             ccccccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEE
Q psy8850         219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS  297 (397)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  297 (397)
                      .....       . .+.++.....++..+++. ....+++..+.++++++.+.+.|++ +++......+..  +..+++.
T Consensus       272 ~~~~~-------~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~~~~~~p~g--g~~~w~~  340 (409)
T PLN02656        272 KKYFD-------I-LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKE-IPCITCPHKPEG--SMAVMVK  340 (409)
T ss_pred             HHHHh-------h-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCcCCCe--EEEEEEe
Confidence            22110       0 112344445555556653 2335777888999999999999988 655432222221  3445556


Q ss_pred             ecC-----C-ChHHHH-HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         298 FNF-----I-EGESLL-MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       298 ~~~-----~-~~~~~~-~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      ++.     . +..++. ..+.  ||.+.+|..|..                   .++|||+++.  +++++++.+++|++
T Consensus       341 l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~-------------------~~~iRi~~~~--~~e~l~eal~rl~~  399 (409)
T PLN02656        341 LNLSLLEDISDDIDFCFKLAREESVIILPGTAVGL-------------------KNWLRITFAA--DPSSLEEALGRIKS  399 (409)
T ss_pred             cchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCC-------------------CCeEEEEeCC--CHHHHHHHHHHHHH
Confidence            541     1 233443 3333  899999965532                   2789999995  79999999999999


Q ss_pred             HHHHHH
Q psy8850         369 KVKKLR  374 (397)
Q Consensus       369 ~~~~~~  374 (397)
                      ++.++.
T Consensus       400 ~~~~~~  405 (409)
T PLN02656        400 FYLRHS  405 (409)
T ss_pred             HHHHhc
Confidence            887655

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=3.3e-29  Score=234.35  Aligned_cols=305  Identities=13%  Similarity=0.069  Sum_probs=222.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++|+.+++++.+.. ...      .|..     ....++++++++++++++++|++|+|+++++.+++.++.    ++||
T Consensus        65 ~~~~~v~~a~~~~~-~~~------~Yp~-----~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~----~~gd  128 (380)
T PLN03026         65 GPPPEVLEALGNMK-FPY------VYPD-----PESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVL----DPGD  128 (380)
T ss_pred             CCCHHHHHHHHhhH-hhc------cCCC-----CCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhc----CCCC
Confidence            56778888876521 101      1111     124679999999999999999999999999999998887    7999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHh-cCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQPILEIGELCRSKG  166 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g  166 (397)
                      +|++++|.|+.+.......   |.++..+|.+.++.+|++++++++ ++++++|++++|+||||.++|.+++.++++.. 
T Consensus       129 ~Vlv~~P~y~~y~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-  204 (380)
T PLN03026        129 KIIDCPPTFGMYVFDAAVN---GAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-  204 (380)
T ss_pred             EEEEcCCChHHHHHHHHHc---CCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-
Confidence            9999999998776665555   999999998777789999999998 77899999999999999999999999999865 


Q ss_pred             cEEEEecccccCc----cccccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhH
Q psy8850         167 VIFHCDAAQAVGK----IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ  240 (397)
Q Consensus       167 i~livD~a~~~~~----~~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (397)
                      ++||+|++|.-..    ........+..+++.|++|.+|..|  +|+++++++....+......         ...+...
T Consensus       205 ~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~---------~~~~~~~  275 (380)
T PLN03026        205 ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP---------YNVSVAA  275 (380)
T ss_pred             CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcCC---------CCCCHHH
Confidence            9999999986221    1111122356788999999777556  78888876655544332211         1233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHHHHhC--CcEecc
Q psy8850         241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAIK--DIAVSS  317 (397)
Q Consensus       241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~--~i~~~~  317 (397)
                      ..+..++++. .+.+++..+.+.+.++++.+.|++ ++++.+. +..   +.++++.++ +.+..++...|.  ||.+.+
T Consensus       276 q~aa~~aL~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~-p~~---~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~  349 (380)
T PLN03026        276 EVAACAALSN-PKYLEDVKNALVEERERLFGLLKE-VPFLEPY-PSD---ANFILCRVTSGRDAKKLKEDLAKMGVMVRH  349 (380)
T ss_pred             HHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHHHH-CCCCeEC-CCC---CeEEEEECCCCCCHHHHHHHHHHCCeEEEE
Confidence            4444455643 235677788899999999999998 6555442 222   456667765 346677777775  888876


Q ss_pred             cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         318 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +...                   ...+++||+++   +.+++++++++|+++
T Consensus       350 ~~~~-------------------~~~~~lRis~~---~~~~~~~l~~al~~~  379 (380)
T PLN03026        350 YNSK-------------------ELKGYIRVSVG---KPEHTDALMEALKQL  379 (380)
T ss_pred             CCCC-------------------CCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence            5321                   11378999998   578999999999754

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.97  E-value=1.1e-29  Score=246.35  Aligned_cols=322  Identities=14%  Similarity=0.117  Sum_probs=223.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++|+.+++++.+.+....      .    |.......++|+++++++      ++++++|++|+|+++++.+++.++.  
T Consensus       162 ~~p~~~~~~~~~~~~~~~------~----Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~--  229 (517)
T PRK13355        162 RTPDEVVYDMAQQLTDTE------G----YSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALL--  229 (517)
T ss_pred             CCCHHHHHHHHHHhhcCC------C----CCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhC--
Confidence            458889999888765321      1    222345678888888888      6788899999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|+++.|+|+.+...+...   |.+++.++++.  ++.+|+++++++++++++++++++|+||||.+++   ++
T Consensus       230 --~~Gd~Vli~~P~y~~y~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~  304 (517)
T PRK13355        230 --DDGDEVLIPSPDYPLWTACVNLA---GGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQ  304 (517)
T ss_pred             --CCCCEEEEcCCCCcCHHHHHHHC---CCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHH
Confidence              89999999999999998887777   99999998864  4679999999999999999999999999999999   67


Q ss_pred             HHHHHHHhcCcEEEEecccccCc----cccccCcccc---cEEEeccccccCCCC--ceEEEEec--CCCCccccccccC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGK----IDINIQNYKV---DLMSFSAHKIYGPKG--IGALYIRR--NPRTRIEAQIHGG  225 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~----~~~~~~~~~~---d~~~~s~~K~~g~~g--~g~~~~~~--~~~~~~~~~~~~~  225 (397)
                      +|+++|++||++||+|++|.-..    ....+..+..   .+++.|++|.++.+|  +|+++++.  +....+...+.- 
T Consensus       305 ~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~-  383 (517)
T PRK13355        305 QIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNM-  383 (517)
T ss_pred             HHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHH-
Confidence            88999999999999999987211    1112111112   344589999665555  78888652  221111110000 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--  300 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--  300 (397)
                        ...... ..+.....+...+++.   ..+.+... +++.+.++++.+.|++ ++++.+..+.+   ...+++.++.  
T Consensus       384 --~~~~~~-~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~~~~~r~~l~~~L~~-~~g~~~~~p~g---~fy~~~~l~~~~  455 (517)
T PRK13355        384 --LANMRL-CSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYEQRELVYNALNA-IPGISAVKPKA---AFYIFPKIDVKK  455 (517)
T ss_pred             --HhcCcC-CcChHHHHHHHHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHhc-CCCcccCCCCe---eeEEEeecCccc
Confidence              000111 2344444445456642   12233332 3445567899999988 77877665533   3334445542  


Q ss_pred             ---CChHHHHHH-hC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         301 ---IEGESLLMA-IK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       301 ---~~~~~~~~~-l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                         .+..++... |.  ||.+.+|..|..                 ..+++|||++.  .+++++++.+++|.++++.++
T Consensus       456 ~~~~~~~~~~~~ll~~~gV~v~pg~~F~~-----------------~~~~~~Ris~~--~~~~~l~~a~~rl~~~~~~~~  516 (517)
T PRK13355        456 FNIHDDEQFALDLLHDKKVLIVQGTGFNW-----------------DKPDHFRVVYL--PRLEDLEDAMDRLADFFSYYR  516 (517)
T ss_pred             CCCCCHHHHHHHHHHhCCEEEeCcchhCC-----------------CCcCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence               134444443 33  899999976642                 12378999996  589999999999999988664

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.97  E-value=3.5e-29  Score=236.85  Aligned_cols=303  Identities=16%  Similarity=0.140  Sum_probs=211.3

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEEEe
Q psy8850          38 TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVTYL  116 (397)
Q Consensus        38 ~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~~v  116 (397)
                      ...+...++++.+++++|++.+++.++++++.+.+.++.++... .++||+|+++++.|+++...+..++. .|.+++.+
T Consensus        61 g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~-~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v  139 (398)
T cd00613          61 GRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRA-YHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEV  139 (398)
T ss_pred             hHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhc-ccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEe
Confidence            44578888999999999998767877786665555444433321 02389999999999999999888743 25899999


Q ss_pred             ccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccH-HHHHHHHHhcCcEEEEecccccCccccccCcccccEEEec
Q psy8850         117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI-LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFS  195 (397)
Q Consensus       117 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l-~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s  195 (397)
                      +.++++.+|++++++++++++++|++++++ ++|.+.|+ ++|.++|++||+++|+|++|+.+....+...+++|++++|
T Consensus       140 ~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s  218 (398)
T cd00613         140 PSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGN  218 (398)
T ss_pred             ccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEee
Confidence            988777899999999999999999999985 89999885 9999999999999999999876655555555689999999


Q ss_pred             cccccCC-----CCceEEEEecCCCCccccccccCCc-----------------cccccCCCCch-----hHHHHHHHHH
Q psy8850         196 AHKIYGP-----KGIGALYIRRNPRTRIEAQIHGGGH-----------------EYGLRSGTLAT-----HQIVGMGEAF  248 (397)
Q Consensus       196 ~~K~~g~-----~g~g~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~-----~~~~~l~~al  248 (397)
                      +||+++|     +++|+++++++....+.+...++..                 ..++..++.++     .......+++
T Consensus       219 ~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l  298 (398)
T cd00613         219 LQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYI  298 (398)
T ss_pred             ccccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHH
Confidence            9995443     4578999987765554332222110                 00111223222     2222222334


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CChHHHHHHhC--CcEecccCccC
Q psy8850         249 RLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAIK--DIAVSSGSACT  322 (397)
Q Consensus       249 ~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~--~i~~~~g~~~~  322 (397)
                      +.+ .++++++.+++.++++++++.|++ +++..  ...+ .....+.+.++.   .+..++...|.  ++.+....   
T Consensus       299 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~---  371 (398)
T cd00613         299 VYLGPEGLKEIAERAHLNANYLAKRLKE-VGGVL--PFNG-PFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMY---  371 (398)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHHHh-cCCcc--cCCC-CeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccc---
Confidence            433 447888999999999999999998 65533  1111 112334555553   23556776665  44332100   


Q ss_pred             CCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         323 SASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                                       ....+.||++++.++|++|||+++++|
T Consensus       372 -----------------~~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         372 -----------------LPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             -----------------cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence                             012378999999999999999999864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.97  E-value=3.2e-29  Score=232.28  Aligned_cols=316  Identities=14%  Similarity=0.166  Sum_probs=225.5

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+++|+++++++.++...+        +    ...+...++++.+++++|.+  ++++++|+|+|+.+++.++.    ++
T Consensus        22 ~s~~~~~v~~a~~~~~~~~--------~----~~~~~~~~~~~~~a~~~g~~--~~~~~~g~t~al~~al~al~----~~   83 (363)
T TIGR01437        22 VSTVSDEVADAQKRGAQNY--------F----EIKELVNKTGEYIANLLGVE--DAVIVSSASAGIAQSVAAVI----TR   83 (363)
T ss_pred             CCCCCHHHHHHHHHHHhcC--------C----CHHHHHHHHHHHHHHhhCCC--eEEEEcCHHHHHHHHHHHHh----cC
Confidence            4568999999999987541        1    23567889999999999986  68999999999999999987    67


Q ss_pred             CC---------------EEEEcCCCChhhHHHHHH-HhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEE-EecccCc
Q psy8850          86 GK---------------HIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVS-VMLVNNE  148 (397)
Q Consensus        86 g~---------------~vl~~~~~~~s~~~~~~~-~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~-~~~~~~~  148 (397)
                      ||               +|+++.+.|..+...+.. +...|.++++++.+  +.+|+++++++++++|++++ +++++|+
T Consensus        84 Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~--~~~d~~~le~ai~~~t~ai~~v~~~~~~  161 (363)
T TIGR01437        84 GNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA--NECSAEQLEAAITEKTAAILYIKSHHCV  161 (363)
T ss_pred             CCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC--CCCCHHHHHHhcChhceEEEEEecCCCC
Confidence            76               899988666555312211 12238899988874  56899999999999999765 5677899


Q ss_pred             ccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc
Q psy8850         149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       149 tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                      +|.+.|+++|+++||+||+++|+|++|+....  ....++.|++++|+|| +.||. .|+++.+++....+.....+.  
T Consensus       162 ~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~--~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~~--  236 (363)
T TIGR01437       162 QKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ--KYYRLGADLVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKGI--  236 (363)
T ss_pred             cCCcCCHHHHHHHHHHcCCeEEEECCCCCchH--HHHHcCCCEEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCCC--
Confidence            99999999999999999999999999983221  1123468999999999 77887 699888765555443322221  


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEec----CC
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN----FI  301 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~  301 (397)
                      ...++.++   ..++++.++++.+.+...+..+...++++++.+.|.+ ++++.+..+...  .......+.|.    +.
T Consensus       237 ~~~~~~~~---~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~-i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~  312 (363)
T TIGR01437       237 GRAMKVGK---ENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNT-LKGVSASIVQDEAGRDIARAEIRFDESELGM  312 (363)
T ss_pred             cceeccCH---HHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhc-CCCeEEEEecCCCCCcCceEEEEEeccCCCC
Confidence            12233333   3477888888887653334444555567789999999 899887743221  11112223343    46


Q ss_pred             ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      +..++.+.|+  ++.+....++.+                   .+.+|+++.. ++++|+|.++++|++++
T Consensus       313 ~~~~l~~~L~~~~~~I~~r~~~~~-------------------~~~~~l~~~~-~~~~e~~~~~~~l~~~~  363 (363)
T TIGR01437       313 TAADVVQALRQGEPAIYTRGYKAN-------------------EGIIEIDPRS-VTGGQLDIIVERIREIV  363 (363)
T ss_pred             CHHHHHHHHhcCCCCEEEeeeeec-------------------CCeEEEEeec-CCHHHHHHHHHHHHHhC
Confidence            7889999996  533332222221                   3788999886 66999999999998763

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.97  E-value=1.8e-29  Score=233.51  Aligned_cols=330  Identities=16%  Similarity=0.125  Sum_probs=239.7

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEe-CChhHHHHHHHHHhHhh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWT-SGATESNNLAIKGAAHF   81 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~-~g~t~a~~~~l~~l~~~   81 (397)
                      ++++..|++|++++.+.......     ....+..+.+.++++++.++++++++++ +|+|+ +|+|.++++++.++.  
T Consensus         9 pGP~~~~~~v~~a~~~~~~~~~~-----~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~--   81 (361)
T TIGR01366         9 SGPSKVRLEQLQALTTTAASLFG-----TSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI--   81 (361)
T ss_pred             CCCcCCCHHHHHHHHhcCccccc-----cCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc--
Confidence            45566778888887643211111     1233557788999999999999999644 68885 669999999999886  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL  161 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l  161 (397)
                        .+ +.+++...+|.+...........+.++..++.+....++     ..+.+++++|+++|.+|.||.+.|+++|   
T Consensus        82 --~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~lV~~~h~et~tG~~~pi~~I---  150 (361)
T TIGR01366        82 --EK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGSAPE-----PQADPGVDVIAWAHNETSTGVAVPVRRP---  150 (361)
T ss_pred             --cc-cccEEecCHHHHHHHHHHHhhhccCCceEEecCCCCCCC-----CccCCCCCEEEEcccCCccceecccccc---
Confidence              33 455666677776666655544333367777766543333     2456789999999999999999999888   


Q ss_pred             HHhcCcEEEEecccccCccccccCcccccEEEeccccccC-CCCceEEEEecCCCCccccccccCCc-------------
Q psy8850         162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGH-------------  227 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~-------------  227 (397)
                      +|++|+++++|+++++|..++|+..  +|++++|.||++| ++|+++++++++..+++.+...++..             
T Consensus       151 ~~~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~  228 (361)
T TIGR01366       151 EGSDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDN  228 (361)
T ss_pred             cccCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhc
Confidence            5899999999999999999999884  8999999999555 55778888898777666544332210             


Q ss_pred             -cccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC-CCCCCCceEEEEec-CCC
Q psy8850         228 -EYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFN-FIE  302 (397)
Q Consensus       228 -~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~  302 (397)
                       ......++++...++++.++++++.+  +++.+.++..++.+++++.+.+ ++.+.++.. +.........+.|+ +.+
T Consensus       229 ~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~v~~v~~~~g~~  307 (361)
T TIGR01366       229 SLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQE-RPYATPFVTDPGKRSQVVGTIDFVDDID  307 (361)
T ss_pred             cccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChhhcccceEEEECCCccC
Confidence             01234567778888899999999865  4899999999999999999999 665555532 21122333445554 456


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..++...|.  ||.+.++..             .      ...+.+|+|+..++|.+||++++++|+++++++
T Consensus       308 ~~~v~~~L~~~gI~i~~~~~-------------~------l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~  361 (361)
T TIGR01366       308 AATVAKILRANGIVDTEPYR-------------K------LGRNQLRVAMFPAIDPDDVEALTECVDWVVERL  361 (361)
T ss_pred             HHHHHHHHHHCCCeeccCcc-------------c------cCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence            777877776  787754420             0      113689999999999999999999999987653

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.97  E-value=1.8e-29  Score=237.51  Aligned_cols=315  Identities=14%  Similarity=0.104  Sum_probs=221.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~--~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++++.+.+++.+.+....  . . .|..    .....++++++++++    |.  +++ +|++|+|+++|+..++.++. 
T Consensus        44 ~~~~~~~~~~~~~~~~~~--~-~-~Y~~----~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~-  114 (385)
T PRK09276         44 PTPDHIIEAMCKAVEDPE--N-H-QYPS----YEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFV-  114 (385)
T ss_pred             CCCHHHHHHHHHHHhCCC--C-C-CCCC----CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC-
Confidence            457788888888775311  0 0 1211    123455666666665    53  555 48899999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCcccccccH---
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---  155 (397)
                         ++||.|++++|+|+.+...+...   |.+++.+|.+.  ++.+|++++++.+.+++++|++++|+||||.++|.   
T Consensus       115 ---~~gd~Vl~~~P~y~~~~~~~~~~---g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~  188 (385)
T PRK09276        115 ---NPGDVVLVPDPGYPVYKIGTIFA---GGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFF  188 (385)
T ss_pred             ---CCCCEEEEcCCCCcChHHHHHHc---CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHH
Confidence               79999999999999998877776   99999999864  34579999999988899999999999999999994   


Q ss_pred             HHHHHHHHhcCcEEEEecccccCc----cccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      ++|+++|++||++||+|++|....    ....+..    .+..+++.|++|.+|.+|  +|+++++++..+.+...... 
T Consensus       189 ~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~-  267 (385)
T PRK09276        189 EEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSN-  267 (385)
T ss_pred             HHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHHhh-
Confidence            788888999999999999997321    1111111    134688899999777667  89999887665555432210 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChH
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE  304 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  304 (397)
                           . ..+.+.....+...+++....++++..+++.++++++.+.|++ + ++.+..+.+   +..+++.++. .+..
T Consensus       268 -----~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~---~~~~~v~~~~~~~~~  336 (385)
T PRK09276        268 -----V-DSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRK-L-GLEVEPPKA---TFYVWAPVPKGYTSA  336 (385)
T ss_pred             -----c-cCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCc---ceEEEEECCCCCCHH
Confidence                 0 1122223333333455433445677888899999999999998 4 666554432   3345677653 4567


Q ss_pred             HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      ++...+.   ||.+.+|..|..                 ...+++||+++.  +++++++.+++|.+
T Consensus       337 ~l~~~ll~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~l~~~l~~l~~  384 (385)
T PRK09276        337 EFATLLLDKAGVVVTPGNGFGE-----------------YGEGYFRIALTV--PDERIEEAVERIKK  384 (385)
T ss_pred             HHHHHHHHhCCEEECCchhhCC-----------------CCCCeEEEEeCC--CHHHHHHHHHHHhh
Confidence            7777652   899999865532                 013789999974  67888888777753

>PRK07179 hypothetical protein; Provisional

Probab=99.97  E-value=3.3e-29  Score=237.08  Aligned_cols=317  Identities=15%  Similarity=0.213  Sum_probs=230.8

Q ss_pred             CCHHHHHHHHHHHhhccCCCCC-CCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPAS-RNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .+|++++++.+++.++..+++. ..+..+   .+...++++.+++++|.+  .+++++||++|+..+++++.    .+|+
T Consensus        69 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~---~~~~~~le~~la~~~g~~--~~~~~~sG~~An~~~l~~l~----~~g~  139 (407)
T PRK07179         69 GHPDIIKAQIAALQEEGDSLVMSAVFLHD---DSPKPQFEKKLAAFTGFE--SCLLCQSGWAANVGLLQTIA----DPNT  139 (407)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCccccccCC---chHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHhC----CCCC
Confidence            4689999999999876545432 123222   236678889999999986  56889999999999999888    6889


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKG  166 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g  166 (397)
                      .|+++..+|.+....+...   |.++..++.     .|++++++++++ ++++|++++++||+|.+.|+++|.++|++||
T Consensus       140 ~v~~~~~~h~s~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~  211 (407)
T PRK07179        140 PVYIDFFAHMSLWEGVRAA---GAQAHPFRH-----NDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFG  211 (407)
T ss_pred             EEEEECCcCHHHHHHHHHC---CCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcC
Confidence            9999999999997766555   777765543     489999999976 5889999999999999999999999999999


Q ss_pred             cEEEEecccccCccc---------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850         167 VIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       167 i~livD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
                      +++|+|++|+.|...         ++.. ..+|++++|++|.+|+. +|+++++++....+......     ....++.+
T Consensus       212 ~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g~~-~G~l~~~~~~~~~~~~~~~~-----~~~~~t~~  284 (407)
T PRK07179        212 CVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFAGR-AGIITCPRELAEYVPFVSYP-----AIFSSTLL  284 (407)
T ss_pred             CEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhhcc-CeEEEeCHHHHHHHHHhCcC-----eeeCCCCC
Confidence            999999999865431         1111 14699999999966664 79999886554433211100     11234556


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC--CcE
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAIK--DIA  314 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~  314 (397)
                      ...++++.++++.... ..+..+++.++++++++.|++ + ++.+.+.     ..++.+.++.. +...+.+.|.  ||.
T Consensus       285 ~~~~aa~~aal~~~~~-~~~~~~~l~~~~~~l~~~L~~-~-g~~v~~~-----~~i~~l~~~~~~~~~~~~~~L~~~GI~  356 (407)
T PRK07179        285 PHEIAGLEATLEVIES-ADDRRARLHANARFLREGLSE-L-GYNIRSE-----SQIIALETGSERNTEVLRDALEERNVF  356 (407)
T ss_pred             HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCCCCCC-----CCEEEEEeCCHHHHHHHHHHHHHCCce
Confidence            6667777777877643 356788999999999999998 5 6554422     34556665432 3345655664  766


Q ss_pred             ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.  .++.+..              ....+.+||+++..+|++||++++++|++++++.
T Consensus       357 ~~--~~~~p~~--------------~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  399 (407)
T PRK07179        357 GA--VFCAPAT--------------PKNRNLIRLSLNADLTASDLDRVLEVCREARDEV  399 (407)
T ss_pred             Ee--eecCCCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence            32  2233310              1124789999999999999999999999887653

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.97  E-value=2.3e-29  Score=234.01  Aligned_cols=316  Identities=20%  Similarity=0.208  Sum_probs=227.7

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEE
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI   89 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~v   89 (397)
                      +|++++++++.++. +++... .+.......+...++++.++++++.+  ..+++++|++++..++.++.    ++||+|
T Consensus        17 ~~~v~~a~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~--~~iv~~sg~~a~~~~~~~~~----~~gd~V   88 (349)
T cd06454          17 HPEVIEAAKEALDK-YGVGAG-GSRLISGTSDLHEELEEELAEFHGKE--AALVFSSGYAANDGVLSTLA----GKGDLI   88 (349)
T ss_pred             CHHHHHHHHHHHHH-hCCCCC-CcCeecCCchHHHHHHHHHHHHhCCC--CEEEeccHHHHHHHHHHHhc----CCCCEE
Confidence            79999999999976 333222 22222234567889999999999986  35666777889888888776    789999


Q ss_pred             EEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-----CceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        90 l~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-----~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      ++++++|+++...+...   |.+++.++.     +|.+++++++++     +++++++++++|+||...|+++|+++|++
T Consensus        89 l~~~~~~~~~~~~~~~~---g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~  160 (349)
T cd06454          89 ISDSLNHASIIDGIRLS---GAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKK  160 (349)
T ss_pred             EEehhhhHHHHHHHHHc---CCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHH
Confidence            99999999987776655   888887763     478889888864     57889999999999999999999999999


Q ss_pred             cCcEEEEecccccCccc--------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         165 KGVIFHCDAAQAVGKID--------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~--------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      +|+++|+|++|+.|...        .+....+.|+++.|+||.+++.| |+++.+++....+......    . ...++.
T Consensus       161 ~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-G~i~~~~~~~~~~~~~~~~----~-~~~~~~  234 (349)
T cd06454         161 YGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG-GYIAGSKELIDYLRSYARG----F-IFSTSL  234 (349)
T ss_pred             cCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC-CEEECCHHHHHHHHHhchh----h-hccCCC
Confidence            99999999999865432        12233468999999999777665 8887776554443322111    0 112345


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHHHHhC--Cc
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAIK--DI  313 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~--~i  313 (397)
                      +...++++.++++...+ ...+.+++.++++++.+.|.+ + ++.+..++.   ..+..+.++ ..+..++.+.|.  ||
T Consensus       235 ~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~gI  308 (349)
T cd06454         235 PPAVAAAALAALEVLQG-GPERRERLQENVRYLRRGLKE-L-GFPVGGSPS---HIIPPLIGDDPAKAVAFSDALLERGI  308 (349)
T ss_pred             CHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHh-c-CCcccCCCC---CcEEEEeCCChHHHHHHHHHHHhCCc
Confidence            66667777788887654 466788999999999999988 4 555554322   223333333 234567777776  78


Q ss_pred             EecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      .+.++.....                ....+.||++++.+++++++++++++|+++
T Consensus       309 ~~~~~~~~~~----------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         309 YVQAIRYPTV----------------PRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             eEEEecCCcc----------------CCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            8776422110                112378999999889999999999999864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.97  E-value=5e-29  Score=235.41  Aligned_cols=322  Identities=16%  Similarity=0.146  Sum_probs=227.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+++++.+.+.....        ..|.......++++.++++++.      ++++|++|+|+|+|+.+++.++.  
T Consensus        48 ~~~~~~~~~~~~~l~~~~~--------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~--  117 (403)
T TIGR01265        48 RTDPEAEEAVKDALRSGKF--------NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA--  117 (403)
T ss_pred             CCCHHHHHHHHHHHhcCCC--------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC--
Confidence            5678999999888754211        0122233567788888888874      56789999999999999999987  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|++++++|+.+...+...   |.+++.++.+  .++.+|++++++++.++++++++++++||||.+++   ++
T Consensus       118 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~  192 (403)
T TIGR01265       118 --NPGANILVPRPGFPLYDTRAAFS---GLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQ  192 (403)
T ss_pred             --CCCCEEEEeCCCchhHHHHHHHc---CCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHH
Confidence              78999999999999887666555   8999998875  34679999999999989999999999999999987   78


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---c-cccCcc---cccEEEeccccccCCCC--ceEEEEec--CCCCc-ccccccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---D-INIQNY---KVDLMSFSAHKIYGPKG--IGALYIRR--NPRTR-IEAQIHG  224 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~-~~~~~~---~~d~~~~s~~K~~g~~g--~g~~~~~~--~~~~~-~~~~~~~  224 (397)
                      +|+++|+++|+++|+|++|+....   + ..+..+   ...+++.|++|.++.+|  +|++++.+  ..... +...+..
T Consensus       193 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~  272 (403)
T TIGR01265       193 KIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKN  272 (403)
T ss_pred             HHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHH
Confidence            899999999999999999873221   1 111111   23577899999655445  78888753  21111 1111000


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---  300 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---  300 (397)
                      .   ... ...++.....++..+++. ....+++..+++.++++.+.+.|+. ++++.+..+..   +..+++.++.   
T Consensus       273 ~---~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~~---g~f~~~~~~~~~~  344 (403)
T TIGR01265       273 L---LQR-ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD-IPGLVCPKPEG---AMYLMVKLELELF  344 (403)
T ss_pred             H---hhh-hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCc---eeEEEEecccccc
Confidence            0   000 012344444555556643 2345777888899999999999988 66765444333   4566676653   


Q ss_pred             ---CChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         301 ---IEGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       301 ---~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                         .+..++...+ .  ||.+.+|..|..                   .++|||+++.  +++++++.+++|.+++.++
T Consensus       345 ~~~~~~~~~~~~l~~~~gv~v~pg~~f~~-------------------~~~iRis~~~--~~~~l~~~l~~l~~~~~~~  402 (403)
T TIGR01265       345 PEIKDDVDFCEKLVREESVICLPGSAFGL-------------------PNWVRITITV--PESMLEEACSRIKEFCERH  402 (403)
T ss_pred             CCCCCHHHHHHHHHHhCCEEEeCccccCC-------------------CCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence               1456776664 2  899999975532                   3889999985  6889999999998887653

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=1.3e-29  Score=235.60  Aligned_cols=305  Identities=15%  Similarity=0.128  Sum_probs=222.7

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      .++|+.+++++.+.+.....+|.           ....++++.+++++++++++|++|+|+++++.+++.++.    ++|
T Consensus        41 ~~~~~~v~~a~~~~~~~~~~Yp~-----------~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~----~~g  105 (366)
T PRK01533         41 FGCSPRVLDELQKSWLDHALYPD-----------GGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVL----KAG  105 (366)
T ss_pred             CCCCHHHHHHHHHHHHhcCcCCC-----------CCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc----CCC
Confidence            35788999999887654221221           135679999999999999999999999999999999987    799


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH---HHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE---LCR  163 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~---l~~  163 (397)
                      |+|+++.|+|+.+...+...   |.+++.+|.++ +.+|+++++++++++++++++++|+||||.+++.+++.+   +|+
T Consensus       106 d~vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~-~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~  181 (366)
T PRK01533        106 DNIVTAGATFPQYRHHAIIE---GCEVKEVALNN-GVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGIS  181 (366)
T ss_pred             CEEEEcCCcHHHHHHHHHHc---CCEEEEeecCC-CCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCC
Confidence            99999999999998887766   99999999864 458999999999889999999999999999999765544   455


Q ss_pred             hcCcEEEEecccccCcc------ccc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCC
Q psy8850         164 SKGVIFHCDAAQAVGKI------DIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       164 ~~gi~livD~a~~~~~~------~~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
                      +++ ++|+|++|.....      ... +...+..+++.|++|.+|.+|  +|+++++++..+.+.....         ..
T Consensus       182 ~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~~---------~~  251 (366)
T PRK01533        182 ENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRL---------PF  251 (366)
T ss_pred             CCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhcC---------CC
Confidence            555 6778999862111      011 112245688999999776555  7888887665555543321         12


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--C
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--D  312 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~  312 (397)
                      ..+.....+..++++. .+..++..+...+.++++.+.++. + ++.+..+.    +.++++.++  +..++.+.|.  |
T Consensus       252 ~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~r~~~~~~l~~-~-g~~~~~~~----~nf~~~~~~--~~~~~~~~l~~~G  322 (366)
T PRK01533        252 NVSSLAQKAATIAFGD-DEFIEEIVRVNTEGLRQYESFCKE-N-EIPFYQSQ----TNFIFLPVE--NGGEIYEACAHAG  322 (366)
T ss_pred             CcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh-C-CCccCCCc----CcEEEEeCC--CHHHHHHHHHHCC
Confidence            3444555555566642 234566677778888888888887 4 55554432    456667664  4566777765  8


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      |.+++   | +                    +++||+++   +.+++++++++|+++++-.+++
T Consensus       323 I~Vr~---~-~--------------------~~iRis~~---~~~~~~~l~~al~~~~~~~~~~  359 (366)
T PRK01533        323 FIIRP---F-P--------------------NGVRITVG---TREQNEGVISVLQQHFENKKRK  359 (366)
T ss_pred             cEEcc---C-C--------------------CceEEeCC---CHHHHHHHHHHHHHHHHhcccc
Confidence            88874   1 2                    77999998   6899999999999887554443

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=1.7e-29  Score=235.02  Aligned_cols=308  Identities=13%  Similarity=0.076  Sum_probs=226.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      ++|+.+++++.+.+....   .. .|..     ....++++.++++++.++ ++|++|+|+++++.+++.++.    ++|
T Consensus        39 ~~~~~~~~~~~~~~~~~~---~~-~Y~~-----~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~----~~g  105 (356)
T PRK04870         39 RLPAELRAELGERLAEVA---LN-RYPD-----PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACA----KPG  105 (356)
T ss_pred             CCCHHHHHHHHHHhhccc---cc-cCCC-----CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhc----CCC
Confidence            578999999998875310   00 1111     135789999999999865 479999999999999999887    799


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSK  165 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~  165 (397)
                      |+|+++.|+|+.+...+...   |.+++.+|.++++.+|++++++++.+ +++++++++++||||.++|.+++.++++..
T Consensus       106 d~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~  182 (356)
T PRK04870        106 ATVLAPEPGFVMYRMSAKLA---GLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAA  182 (356)
T ss_pred             CEEEECCCCHHHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHC
Confidence            99999999999887776666   99999999987788999999999864 899999999999999999988888887776


Q ss_pred             CcEEEEecccccCcc---ccccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhH
Q psy8850         166 GVIFHCDAAQAVGKI---DINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ  240 (397)
Q Consensus       166 gi~livD~a~~~~~~---~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (397)
                      ++++|+|++|.....   ...+...+..+++.|++| +|.+|  +|+++++++..+.+......+         ..+...
T Consensus       183 ~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~~~---------~~~~~~  252 (356)
T PRK04870        183 PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPPY---------NVNVLT  252 (356)
T ss_pred             CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccCCC---------cCCHHH
Confidence            889999999862111   111222245688999999 56555  899988876555554332111         223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEeccc
Q psy8850         241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSG  318 (397)
Q Consensus       241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g  318 (397)
                      ..+...+++. .+.+++..++++++++++.+.|++ ++++.+. ++.   +.++++.++  +..++...|.  ||.+.++
T Consensus       253 q~~a~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~~~---~~~~~~~~~--~~~~~~~~l~~~gI~v~~~  324 (356)
T PRK04870        253 QATALFALEH-VDVLDAQAAQLRAERTRLAAALAA-LPGVTVF-PSA---ANFILVRVP--DAAAVFDGLKTRGVLVKNL  324 (356)
T ss_pred             HHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEEC-CCC---CeEEEEECC--CHHHHHHHHHHCCEEEEEC
Confidence            3333344443 234677788889999999999988 7787553 222   446666665  4566766665  8999987


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ..+..                 ...+++||+++   +.+++++++++|+++
T Consensus       325 ~~f~~-----------------~~~~~iRis~~---~~~~~~~l~~al~~~  355 (356)
T PRK04870        325 SGMHP-----------------LLANCLRVTVG---TPEENAQFLAALKAA  355 (356)
T ss_pred             CCCCC-----------------CCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence            65432                 11379999998   689999999999875

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.97  E-value=2.4e-29  Score=236.97  Aligned_cols=314  Identities=16%  Similarity=0.163  Sum_probs=217.1

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChhHHHHHHHHHhHhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~-~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +|+.+.+++.+.+...    .  .+  .|.......++++++++++    +  ++++ +|++|+|+++|+..++.++.  
T Consensus        49 ~p~~~~~~~~~~~~~~----~--~~--~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~--  118 (394)
T PRK05942         49 APQPVIEAAIAALADP----Q--NH--GYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYV--  118 (394)
T ss_pred             CCHHHHHHHHHHHhCC----C--Cc--cCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhC--
Confidence            4566777776665421    0  11  1122233456666666665    5  3566 48899999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|++++|+|+.+...+...   |.+++.+|.+.  ++.+|++++++.+.++++++++++|+||||.+++   ++
T Consensus       119 --~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~  193 (394)
T PRK05942        119 --NPGDVVLVPSPAYPAHFRGPLIA---GAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFE  193 (394)
T ss_pred             --CCCCEEEEcCCCCcchHHHHHHc---CCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHH
Confidence              89999999999999988777666   99999999874  3469999999999889999999999999999999   67


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc----ccc---cCc-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI----DIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~----~~~---~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      +|+++|++||++||+|++|.....    ...   +.. .+..+++.|++|.+|.+|  +|+++.+++..+.+......  
T Consensus       194 ~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~--  271 (394)
T PRK05942        194 EIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTN--  271 (394)
T ss_pred             HHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHHhh--
Confidence            888999999999999999873221    111   111 134577899999666555  89999887666555433211  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGES  305 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  305 (397)
                          . ..+.+.....++..+++...+++++.++++.++++++.+.|++ + ++.+..+.+   +.++++.++. .+..+
T Consensus       272 ----~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~---~~f~~~~~~~~~~~~~  341 (394)
T PRK05942        272 ----L-DYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGE-L-GWNIPPTKA---TMYLWVPCPVGMGSTD  341 (394)
T ss_pred             ----c-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe---eeEEEEECCCCCCHHH
Confidence                0 1122333344455666655556788889999999999999988 4 665554322   3356677763 45566


Q ss_pred             HHHH-hC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         306 LLMA-IK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       306 ~~~~-l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      +... +.  ||.+.+|..|..                 ...++|||+++.  +.+.+.+.+++|.+
T Consensus       342 ~~~~~l~~~gV~v~~g~~f~~-----------------~~~~~iRis~~~--~~~~l~~~l~~l~~  388 (394)
T PRK05942        342 FALNVLQKTGVVVTPGNAFGE-----------------GGEGYVRISLIA--DCDRLGEALDRLKQ  388 (394)
T ss_pred             HHHHHHHHCCEEEeCChhhCc-----------------CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence            6654 32  899998865432                 113799999973  45555555555543

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.97  E-value=3.5e-29  Score=236.43  Aligned_cols=325  Identities=14%  Similarity=0.108  Sum_probs=225.3

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      .++|+.+++++.+.+.....   . .|    .......++++++++++      ++++++|++|+|+++|+.+++.++. 
T Consensus        48 ~~~p~~~~~a~~~~~~~~~~---~-~Y----~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-  118 (409)
T PLN00143         48 FRTTNIAEDAIVEAVRSAKF---N-SY----APTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLA-  118 (409)
T ss_pred             CCCCHHHHHHHHHHHhCcCC---C-CC----CCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHc-
Confidence            57789999999988764110   0 12    11223456777777776      3577899999999999999999988 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l  155 (397)
                         ++||.|++..|+|+.+.......   |.++..++.+  +++.+|++++++++.++++++++++|+||||.+++   +
T Consensus       119 ---~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~  192 (409)
T PLN00143        119 ---RPEANILLPRPGFPDVETYAIFH---HLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHL  192 (409)
T ss_pred             ---CCCCEEEEcCCCCcCHHHHHHHc---CCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHH
Confidence               79999999999999998877776   9999999875  34568999999999888999999999999999999   5


Q ss_pred             HHHHHHHHhcCcEEEEecccccCc---c---cc-ccCcccccEEEeccccccCCCC--ceEEEEe-cC-CCCc---cccc
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGK---I---DI-NIQNYKVDLMSFSAHKIYGPKG--IGALYIR-RN-PRTR---IEAQ  221 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~---~---~~-~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~-~~-~~~~---~~~~  221 (397)
                      ++|+++|++||++||+|++|....   .   ++ .+......+++.|++|.++.+|  +|+++++ ++ ..+.   +...
T Consensus       193 ~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~  272 (409)
T PLN00143        193 NKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSI  272 (409)
T ss_pred             HHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHH
Confidence            678888999999999999997321   1   11 1111134588999999765555  7888884 32 2211   1111


Q ss_pred             cccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC
Q psy8850         222 IHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF  300 (397)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (397)
                      ...    ..... ..+.....++..+++. ....+++..+++++.++++.+.|.+ ++.......+..  +.++++.++.
T Consensus       273 ~~~----~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~p~g--g~f~w~~l~~  344 (409)
T PLN00143        273 KKA----LNPAP-FPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKE-IPCIMCPQKAEG--AFFALVKLNL  344 (409)
T ss_pred             HHH----HhccC-CCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCCe--eEEEEEecch
Confidence            000    00001 1233344444455542 2335677788888888889999988 654332222221  4566677652


Q ss_pred             -----C-ChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         301 -----I-EGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       301 -----~-~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                           . +..++...+ .  ||.+.+|..|..                   .+++||+++.  +.+++++.+++|.++++
T Consensus       345 ~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-------------------~~~iRi~~~~--~~~~l~~al~rl~~~l~  403 (409)
T PLN00143        345 LLLEDIEDDMEFCLKLAKEESLIILPGVTVGL-------------------KNWLRITFAV--EQSSLEDGLGRLKSFCG  403 (409)
T ss_pred             hhcCCCCCHHHHHHHHHHhCCEEEeCccccCC-------------------CCeEEEEEcC--CHHHHHHHHHHHHHHHH
Confidence                 1 345565444 3  999999965421                   3789999984  68999999999999987


Q ss_pred             HHHh
Q psy8850         372 KLRE  375 (397)
Q Consensus       372 ~~~~  375 (397)
                      ++.+
T Consensus       404 ~~~~  407 (409)
T PLN00143        404 RHAK  407 (409)
T ss_pred             Hhcc
Confidence            6654

>PRK08363 alanine aminotransferase; Validated

Probab=99.97  E-value=3.2e-29  Score=236.61  Aligned_cols=322  Identities=11%  Similarity=0.112  Sum_probs=223.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++.+.+....    . .|..    .....++++.+++++    |  +++++|++|+|+++|+.+++.++.  
T Consensus        46 ~p~~~~~~~~~~~~~~~~----~-~Y~~----~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~--  114 (398)
T PRK08363         46 QPPEHMKEAYCRAIKEGH----N-YYGP----SEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--  114 (398)
T ss_pred             CCCHHHHHHHHHHHHcCC----C-CCCC----CCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC--
Confidence            468889999988775411    1 1211    234566777777776    3  577889999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEe-ccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL-KPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v-~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||.|+++.++|+.+...+...   |.+++.+ +.++ ++.+|+++++++++++++++++++++||||.+++   ++
T Consensus       115 --~~gd~Vl~~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~  189 (398)
T PRK08363        115 --DPGDEILIPGPSYPPYTGLVKFY---GGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLK  189 (398)
T ss_pred             --CCCCEEEEcCCCCcchHHHHHHc---CCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHH
Confidence              79999999999999998877766   8888877 4543 4468999999999889999999999999999998   77


Q ss_pred             HHHHHHHhcCcEEEEecccccCccc------cccCcccccEEEeccccccCCCC--ceEEEE--ecCCCCccccccccCC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKID------INIQNYKVDLMSFSAHKIYGPKG--IGALYI--RRNPRTRIEAQIHGGG  226 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~------~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~--~~~~~~~~~~~~~~~~  226 (397)
                      +|+++|+++|+++|+|++|+.....      ..+......+++.|++|.++.+|  +|++++  +++..+.+........
T Consensus       190 ~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~  269 (398)
T PRK08363        190 EILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLA  269 (398)
T ss_pred             HHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHh
Confidence            8999999999999999998732211      11111123577899999654444  788887  4333333322221100


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CCh
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEG  303 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  303 (397)
                         .... ..+.....+...++....+.+.+..++++++++++.+.|++ ++++.+..+.+   +.++++.++.   .+.
T Consensus       270 ---~~~~-~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~g---~~~~~~~l~~~~~~~~  341 (398)
T PRK08363        270 ---RIRL-CPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE-IPGISTTKPQG---AFYIFPRIEEGPWKDD  341 (398)
T ss_pred             ---cccc-cCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhc-CCCCEecCCCe---EEEEEEEeccCCCCCH
Confidence               0011 23333344444555433446777888999999999999988 77766554432   3344445654   234


Q ss_pred             HHHHHH-hC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMA-IK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       304 ~~~~~~-l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .++... +.  ||.+.+|..|..                 ...+++||++.  .+++++++++++|++++.+
T Consensus       342 ~~~~~~~l~~~gV~v~~g~~f~~-----------------~~~~~iRis~~--~~~~~l~~~l~~l~~~~~~  394 (398)
T PRK08363        342 KEFVLDVLHEAHVLFVHGSGFGE-----------------YGAGHFRLVFL--PPVEILEEAMDRFEEFMRE  394 (398)
T ss_pred             HHHHHHHHHhCCEEEeCchhhCC-----------------CCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            555434 33  899999876532                 11378999996  4789999999999988754

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=4.7e-29  Score=232.12  Aligned_cols=308  Identities=15%  Similarity=0.115  Sum_probs=223.0

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++|+.+++++.+.+....    . .|..     ....++++++++++++++++|++|+|+++|+.+++.++.    ++||
T Consensus        37 ~~~~~~~~a~~~~~~~~~----~-~y~~-----~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~----~~gd  102 (353)
T PRK05387         37 PPSPKVLEAIRAALGDDL----R-LYPD-----PNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFF----NHDR  102 (353)
T ss_pred             CCCHHHHHHHHHHhhhhh----h-cCCC-----CcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCC
Confidence            457889999988765311    0 1211     123689999999999999999999999999999999988    7999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc-C
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK-G  166 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~-g  166 (397)
                      +|++++|+|+.+....+..   |.+++.+|.++++.+|++++++    .++++++++|+||||.++|.+++.++++.+ +
T Consensus       103 ~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~  175 (353)
T PRK05387        103 PLLFPDITYSFYPVYAGLY---GIPYEEIPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERILAANPD  175 (353)
T ss_pred             EEEEeCCCHHHHHHHHHHc---CCEEEEeecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC
Confidence            9999999998877666666   9999999998778899999874    457889999999999999999999998876 9


Q ss_pred             cEEEEecccccCc-c-cccc-CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHH
Q psy8850         167 VIFHCDAAQAVGK-I-DINI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQI  241 (397)
Q Consensus       167 i~livD~a~~~~~-~-~~~~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (397)
                      +++|+|++|.... . ...+ ...+.++++.|++|.+|.+|  +|+++.+++..+.+......      +...+.+....
T Consensus       176 ~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~------~~~~~~~~~~q  249 (353)
T PRK05387        176 SVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNS------FNSYPLDRLAQ  249 (353)
T ss_pred             cEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhcc------CCCCCcCHHHH
Confidence            9999999986211 1 1111 12245789999999665444  79998876655554433211      11223444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccC
Q psy8850         242 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGS  319 (397)
Q Consensus       242 ~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~  319 (397)
                      .++.++++. .+.+++..+++.++++++.+.|++ + ++.+.. ..   +.++++.+++.+..++.+.|.  ||.+..  
T Consensus       250 ~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-~~---~~~~~~~~~~~~~~~~~~~l~~~gi~v~~--  320 (353)
T PRK05387        250 AGAIAAIED-EAYFEETRAKVIATRERLVEELEA-L-GFEVLP-SK---ANFVFARHPSHDAAELAAKLRERGIIVRH--  320 (353)
T ss_pred             HHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCeECC-Cc---CcEEEEECCCCCHHHHHHHHHHCCEEEEE--
Confidence            555455542 234667788888999999999998 5 665432 22   345667766666777887776  887752  


Q ss_pred             ccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                       +..                ....+++||+++   +.+++++++++|++++.
T Consensus       321 -~~~----------------~~~~~~iRis~~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        321 -FNK----------------PRIDQFLRITIG---TDEEMEALVDALKEILA  352 (353)
T ss_pred             -CCC----------------CCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence             111                011378999997   57999999999998754

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.97  E-value=6.2e-29  Score=234.96  Aligned_cols=328  Identities=15%  Similarity=0.182  Sum_probs=228.0

Q ss_pred             CCCCCC-CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-----CCCCCcEEEeCChhHHHHHHH
Q psy8850           2 DYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-----YADPREIIWTSGATESNNLAI   75 (397)
Q Consensus         2 ~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~~~~i~~~~g~t~a~~~~l   75 (397)
                      |.+.+. ++|+.+.+++.+......      .|    .......++++.+++++     ++++++|++|+|+++|+.+++
T Consensus        36 ~~~~~~~~~~~~~~~a~~~~~~~~~------~Y----~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~  105 (397)
T PRK07568         36 NIGQPDIKTPEVFFEAIKNYDEEVL------AY----SHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAM  105 (397)
T ss_pred             cCCCCCCCCCHHHHHHHHHHhcCCc------Cc----CCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHH
Confidence            444443 467888888776543221      11    11234577888888887     467789999999999999999


Q ss_pred             HHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCC-C-CCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850          76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNG-L-ITLSQLEEKICSDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        76 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~-~-~d~~~l~~~i~~~~~~v~~~~~~~~tG~~  152 (397)
                      .++.    ++||+|++++|.|+.+....+..   |.+++.++.+ +++ . .+++++++++++++++|++++|+||||.+
T Consensus       106 ~~l~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~  178 (397)
T PRK07568        106 MAIC----DPGDEILVPEPFYANYNGFATSA---GVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVV  178 (397)
T ss_pred             HHhc----CCCCEEEEecCCCccHHHHHHHc---CCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCcc
Confidence            8886    78999999999998876655555   9999999986 333 2 35799999999999999999999999999


Q ss_pred             cc---HHHHHHHHHhcCcEEEEecccccCc----ccc---ccCc-ccccEEEeccccccCCCC--ceEEEEec-CCCCcc
Q psy8850         153 QP---ILEIGELCRSKGVIFHCDAAQAVGK----IDI---NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRI  218 (397)
Q Consensus       153 ~~---l~~i~~l~~~~gi~livD~a~~~~~----~~~---~~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~-~~~~~~  218 (397)
                      ++   +++|+++|+++|+++|+|++|+...    ...   ++.. .+..+++.|++|.+|.+|  +|++++++ +....+
T Consensus       179 ~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~  258 (397)
T PRK07568        179 YTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAA  258 (397)
T ss_pred             CCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHH
Confidence            97   6788999999999999999987221    111   1111 134588899999655434  78887753 333332


Q ss_pred             ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEe
Q psy8850         219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF  298 (397)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  298 (397)
                      ......       .. ..+.....++..+++....++++..+.++++++.+.+.|++ ++++.+..+.+   +.++++.+
T Consensus       259 ~~~~~~-------~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~g---~~~~~~~l  326 (397)
T PRK07568        259 MKLCQA-------RL-SPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK-IPGVVCEKPKG---AFYIIAKL  326 (397)
T ss_pred             HHHhhc-------cC-CCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCc---ceEEEEec
Confidence            221110       01 23333444454566543456778888999999999999988 66765554432   33456777


Q ss_pred             cCCChHHHHHHh--------CCcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         299 NFIEGESLLMAI--------KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       299 ~~~~~~~~~~~l--------~~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      +..+..++...+        .||.+.+|..|..              .....+++|||+++.  +.+++++++++|.+++
T Consensus       327 ~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~--------------~~~~~~~~iRls~~~--~~~~~~~~~~~l~~~l  390 (397)
T PRK07568        327 PVDDAEDFAKWLLTDFNYNGETVMVAPASGFYA--------------TPGLGKNEIRIAYVL--NEEDLKRAMEILKEAL  390 (397)
T ss_pred             CCCCHHHHHHHHHhhcccccceEEEeCchHhcC--------------CCCCCCCeEEEEEeC--CHHHHHHHHHHHHHHH
Confidence            654566776666        3789998865532              011123789999974  6899999999999988


Q ss_pred             HHHH
Q psy8850         371 KKLR  374 (397)
Q Consensus       371 ~~~~  374 (397)
                      +++.
T Consensus       391 ~~~~  394 (397)
T PRK07568        391 EKYN  394 (397)
T ss_pred             HHhh
Confidence            7654

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.97  E-value=1.2e-28  Score=231.88  Aligned_cols=318  Identities=13%  Similarity=0.124  Sum_probs=222.0

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC---CCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA---DPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~---~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +++.+.+++.+.+....    . .|..    .....++++++++++    +.   ++++|++|+|+++|+.+++.++.  
T Consensus        44 ~~~~~~~~~~~~~~~~~----~-~Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~--  112 (391)
T PRK07309         44 TPDHVKEAAKRAIDANQ----S-HYTG----MAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL--  112 (391)
T ss_pred             CCHHHHHHHHHHHhcCC----C-CCCC----CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc--
Confidence            46778888887765311    1 1111    122455666666655    43   24679999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcC---CceEEEEecccCccccccc---
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP---  154 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~---  154 (397)
                        ++||+|++.+|.|+.+...++..   |.+++.++.+. ++.+|++++++++++   +++++++++|+||||.+++   
T Consensus       113 --~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~  187 (391)
T PRK07309        113 --EPGDKVLLPAPAYPGYEPIVNLV---GAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQ  187 (391)
T ss_pred             --CCCCEEEEeCCCCcchHHHHHHc---CCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHH
Confidence              78999999999999998777766   99999999865 346899999999864   6899999999999999988   


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCcc----ccccCc--ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCC
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQN--YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~--~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      +++|+++|++||+++|+|++|+....    ..++..  .+..+++.|++|.+|.+|  +|+++++++....+.....   
T Consensus       188 ~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~---  264 (391)
T PRK07309        188 IKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQ---  264 (391)
T ss_pred             HHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHHh---
Confidence            67888999999999999999873221    112211  134588999999776445  7899988776655543211   


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC---Ch
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---EG  303 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  303 (397)
                          +...+++.....++..+++.........++++.++++++.+.|++ . ++.+..+.+   +..+++.++..   ++
T Consensus       265 ----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~p~g---g~~~~~~l~~~~~~~~  335 (391)
T PRK07309        265 ----YLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD-L-GFKIIKPDG---AFYIFAKIPAGYNQDS  335 (391)
T ss_pred             ----hcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe---eEEEEEECCCCCCCCH
Confidence                111123333444444455432222345667788888999999988 4 666554432   33455566532   34


Q ss_pred             HHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       304 ~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .++.+.+ .  ||.+.+|..|..                 ..+++|||+++.  +.+++++++++|+++++++
T Consensus       336 ~~~~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~~--~~~~l~~~i~~l~~~~~~~  389 (391)
T PRK07309        336 FKFLQDFARKKAVAFIPGAAFGP-----------------YGEGYVRLSYAA--SMETIKEAMKRLKEYMEEH  389 (391)
T ss_pred             HHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence            5666553 2  899999976543                 123899999985  6899999999999988665

>PRK08068 transaminase; Reviewed

Probab=99.97  E-value=4e-29  Score=235.18  Aligned_cols=315  Identities=12%  Similarity=0.086  Sum_probs=220.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++++.+.+++.+.+....   .. .|    .......++++++++++    |  ++++ +|++|+|+++++..++.++. 
T Consensus        45 ~~~~~~~~~~~~~~~~~~---~~-~Y----~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~-  115 (389)
T PRK08068         45 PTPEHIVEALQEAAENPA---NH-KY----SPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLM-  115 (389)
T ss_pred             CCCHHHHHHHHHHHhCCC---CC-CC----CCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhC-
Confidence            345778888888765311   00 12    11223566777777765    5  5666 79999999999999988887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCcccccccH---
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---  155 (397)
                         ++||.|++++|+|+.+...+...   |.+++.+|.+.  +..+|++++++.+.+++++|++++|+||||.+++.   
T Consensus       116 ---~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~  189 (389)
T PRK08068        116 ---NPGDTILVPDPGYPDYLSGVALA---RAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFF  189 (389)
T ss_pred             ---CCCCEEEEcCCCCcchHHHHHhc---CCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHH
Confidence               79999999999999998887776   99999999974  34679999999998889999999999999999995   


Q ss_pred             HHHHHHHHhcCcEEEEecccccCc----ccccc---C-cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGK----IDINI---Q-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~----~~~~~---~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      ++|+++|++||++||+|++|+...    .+...   . ..+..+++.|++|.+|.+|  +|+++.+++..+.+...... 
T Consensus       190 ~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~-  268 (389)
T PRK08068        190 EETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDH-  268 (389)
T ss_pred             HHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHHHHHHhh-
Confidence            578889999999999999986211    11111   1 1134588899999776556  79988877665555433211 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChH
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE  304 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  304 (397)
                           ...+.++..+.++. .++....+.+++.++++.++++.+.+.|++ + ++.+..+.+   +.++++.+++ .++.
T Consensus       269 -----~~~~~~~~~q~~~~-~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~-~-g~~~~~~~g---~~~~~v~~~~~~~~~  337 (389)
T PRK08068        269 -----LFVSLFGAIQDAAI-EALLSDQSCVAELVARYESRRNAFISACRE-I-GWEVDAPKG---SFFAWMPVPKGYTSE  337 (389)
T ss_pred             -----ccCCCChHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCe---eEEEEEECCCCCCHH
Confidence                 11223332333333 333322345778889999999999999988 4 555443322   3345677763 4667


Q ss_pred             HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      ++.+.+.   ||.+.+|..|..                 ...+++||+++.  ++++++..+++|.+
T Consensus       338 ~~~~~l~~~~gi~v~pg~~f~~-----------------~~~~~iRi~~~~--~~~~l~~al~~l~~  385 (389)
T PRK08068        338 QFADLLLEKAHVAVAPGNGFGE-----------------HGEGYVRVGLLT--DEERLREAVERIGK  385 (389)
T ss_pred             HHHHHHHHhCCEEEecchHhCc-----------------cCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence            7877763   899999865432                 113789999974  56777777776654

>PRK08912 hypothetical protein; Provisional

Probab=99.97  E-value=1.2e-28  Score=231.98  Aligned_cols=319  Identities=17%  Similarity=0.143  Sum_probs=224.1

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChhHHHHHHHHHhHhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~-~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      .|+.+.+++.+.+...    .. .|..    .....++|+++++++    |  ++++ +|++|+|+++|+.+++.++.  
T Consensus        40 ~p~~~~~~~~~~~~~~----~~-~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~--  108 (387)
T PRK08912         40 GPEDVRRAAADALLDG----SN-QYPP----MMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALV--  108 (387)
T ss_pred             CCHHHHHHHHHHHhcC----CC-CCCC----CCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc--
Confidence            4667777777765431    11 2222    123345555555554    5  4566 89999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE  157 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~  157 (397)
                        ++||+|+++.|+|+.+...+...   |.+++.++.+. ++.+|++++++.+.++++++++++++||||.++|   +++
T Consensus       109 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~  183 (387)
T PRK08912        109 --EPGDEVVLFQPLYDAYLPLIRRA---GGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELAL  183 (387)
T ss_pred             --CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHH
Confidence              78999999999999988877666   99999999864 5679999999999989999999999999999998   566


Q ss_pred             HHHHHHhcCcEEEEecccccCcc------cc-ccCc-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKI------DI-NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~------~~-~~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                      |.++|++||+++|+|++|+....      ++ .+.. .+.++++.|++|.+|.+|  +|+++++++....+......   
T Consensus       184 i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~---  260 (387)
T PRK08912        184 LAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQF---  260 (387)
T ss_pred             HHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhh---
Confidence            89999999999999999862211      11 1111 246799999999777556  79999887655554332110   


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC----CCh
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF----IEG  303 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  303 (397)
                         ...+.++ ....++..++....+.+++..++++++++++.+.|++ . ++.+..+.+   +.++++.++.    .+.
T Consensus       261 ---~~~~~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~g---~~~l~~~l~~~~~~~~~  331 (387)
T PRK08912        261 ---LTFTTPP-NLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRR-I-GFPVLPSQG---TYFLTVDLAPLGLAEDD  331 (387)
T ss_pred             ---ccccCCh-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCc---ceEEEecccccCCCCCH
Confidence               0011222 2233333444322345677888899999999999998 4 665554332   3456667653    356


Q ss_pred             HHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       304 ~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .++...+ .  ||.+.+|..|...               ....+++||+++.  +++++++.+++|.+++++
T Consensus       332 ~~~~~~l~~~~gV~v~pg~~f~~~---------------~~~~~~iRl~~~~--~~~~l~~~l~rl~~~l~~  386 (387)
T PRK08912        332 VAFCRRLVEEAGVAAIPVSAFYEE---------------DPVTSVVRFCFAK--RDATLDEAVERLAAARRR  386 (387)
T ss_pred             HHHHHHHHhcCCEEEecchhhCCC---------------CCCCCEEEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence            6777765 2  8999998765431               0123799999996  589999999999887653

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.97  E-value=9.5e-29  Score=233.42  Aligned_cols=321  Identities=12%  Similarity=0.035  Sum_probs=225.6

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +++.+.+++.+.+....    . .|.......+..+.+.+.+++.+|.  .+++|++|+|+++|+..++.++.    ++|
T Consensus        47 ~~~~~~~~~~~~~~~~~----~-~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~----~~g  117 (402)
T PRK06107         47 TPDHIKQAAVAAIERGE----T-KYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL----EAG  117 (402)
T ss_pred             CCHHHHHHHHHHHHcCC----C-CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc----CCC
Confidence            46788888888775311    1 2222222334556666666666676  56789999999999999998876    799


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCcccccccH---HHHHHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGEL  161 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---~~i~~l  161 (397)
                      |+|++++|+|+.+...+...   +..+..++++.  ++.+|++++++++.++++++++++|+||||.++|.   ++|+++
T Consensus       118 d~vl~~~p~y~~y~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~  194 (402)
T PRK06107        118 DEVIIPAPYWVSYPDMVLAN---DGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADV  194 (402)
T ss_pred             CEEEEecCCCcCHHHHHHHc---CCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHH
Confidence            99999999999887766555   77777888752  35689999999998899999999999999999985   667888


Q ss_pred             HHhc-CcEEEEecccccC---c-cccccCc-----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccc
Q psy8850         162 CRSK-GVIFHCDAAQAVG---K-IDINIQN-----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY  229 (397)
Q Consensus       162 ~~~~-gi~livD~a~~~~---~-~~~~~~~-----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~  229 (397)
                      |+++ |+++|+|++|+..   . ....+..     .+..+++.|++|.+|.+|  +|+++++++....+......     
T Consensus       195 a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~-----  269 (402)
T PRK06107        195 LLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQ-----  269 (402)
T ss_pred             HHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHHh-----
Confidence            9998 9999999998621   1 1111111     134678899999666555  69998887665555443211     


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---------
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---------  300 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  300 (397)
                        ....++.....++..+++.....+++..+.+.++++.+.+.|++ ++++.+..+.+   +..+++.++.         
T Consensus       270 --~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~~~p~g---g~~~~~~~~~~~~~~~~~~  343 (402)
T PRK06107        270 --SSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNA-IPGLSCLVPDG---AFYLYVNCAGLIGKTTPEG  343 (402)
T ss_pred             --cccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCCc---ceEEeeecccccccccccc
Confidence              11233444444444555422335677788899999999999988 66766654433   3344555421         


Q ss_pred             ---CChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         301 ---IEGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       301 ---~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                         .+..++...+ .  ||.+.+|..|..                   .+++||+++.  +.+++++++++|.+.++++
T Consensus       344 ~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~-------------------~~~iRis~~~--~~e~l~~~l~~l~~~l~~~  401 (402)
T PRK06107        344 KVLETDQDVVLYLLDSAGVAVVQGTAYGL-------------------SPYFRLSIAT--SLETLEEACARIERAVAAL  401 (402)
T ss_pred             cCCCCHHHHHHHHHHhCCEEEeCccccCC-------------------CCeEEEEeCC--CHHHHHHHHHHHHHHHHhc
Confidence               1345666554 2  899999975532                   2789999995  7999999999999988765

>PRK07337 aminotransferase; Validated

Probab=99.97  E-value=5.6e-29  Score=234.24  Aligned_cols=318  Identities=14%  Similarity=0.071  Sum_probs=221.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++.+.+....    . .|..    .....++++.+++++    |  +++++|++|+|+++|+.+++.++.  
T Consensus        43 ~~~~~~~~~~~~~~~~~~----~-~Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--  111 (388)
T PRK07337         43 TAPEPVVEAAARALRRGV----T-QYTS----ALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV--  111 (388)
T ss_pred             CCCHHHHHHHHHHHhcCC----C-CCCC----CCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc--
Confidence            457888888888775311    1 1211    223556666666665    4  477889999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|++++|+|+++...+...   |.+++.+|.+.  ++.+|++++++.+++++++|++++|+||||.+++   ++
T Consensus       112 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~  186 (388)
T PRK07337        112 --ERGDEVLMPDPSYPCNRHFVAAA---EGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELR  186 (388)
T ss_pred             --CCCCEEEEeCCCchhhHHHHHHc---CCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHH
Confidence              79999999999999998777666   88999999874  4579999999999999999999999999999998   56


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---ccccCccccc-EEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQNYKVD-LMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~~~~~d-~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +|+++|+++|+++|+|++|.....   +.....++.+ +++.|++|.+|.+|  +|+++++++....+......      
T Consensus       187 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~------  260 (388)
T PRK07337        187 RIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQN------  260 (388)
T ss_pred             HHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHH------
Confidence            788889999999999999873211   1122222233 56789999666555  79999887655554433211      


Q ss_pred             ccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC------CCh
Q psy8850         231 LRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF------IEG  303 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  303 (397)
                      ... ..+.....++..+++. ..+.+.+.++.++++++++.+.|++ + ++.+...+.  .+.++++.++.      .++
T Consensus       261 ~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~-~~~~~~~p~--~g~f~~~~~~~~~~~~~~~~  335 (388)
T PRK07337        261 LFI-CASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES-L-GFKVPVMPD--GAFYVYADCRGVAHPAAGDS  335 (388)
T ss_pred             hcc-CCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh-c-CCccccCCC--eeEEEEEecccccCCCCCCH
Confidence            111 2233333333344431 1234566788888999999999988 4 443321222  14566777763      356


Q ss_pred             HHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       304 ~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .++...+ .  ||.+.+|..|...                ...+++||+++.  +.++++..+++|.+++
T Consensus       336 ~~~~~~ll~~~gv~v~pg~~f~~~----------------~~~~~~Ri~~~~--~~~~l~~~l~rl~~~l  387 (388)
T PRK07337        336 AALTQAMLHDAGVVLVPGRDFGPH----------------APRDYIRLSYAT--SMSRLEEAVARLGKLF  387 (388)
T ss_pred             HHHHHHHHHhCCEEEeCchhhCCC----------------CCCCEEEEEecC--CHHHHHHHHHHHHHHh
Confidence            6776553 2  8999998765420                123799999995  6889999888887654

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=1.1e-28  Score=230.84  Aligned_cols=306  Identities=16%  Similarity=0.119  Sum_probs=223.8

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +++.+++++.+.......++..           ...++++.+++++++++++|++|+|+++++..++.++.    ++||+
T Consensus        46 ~~~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~----~~gd~  110 (367)
T PRK02731         46 PSPKAIEAIRAAADELHRYPDG-----------SGFELKAALAEKFGVDPERIILGNGSDEILELLARAYL----GPGDE  110 (367)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCC-----------cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc----CCCCE
Confidence            5788999988877543222221           12579999999999988899999999999999988886    78999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc--C
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK--G  166 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~--g  166 (397)
                      |++++++|..+.......   |.+++.+|.+ ++.+|++++++++++++++|++++++||||.++|.+++.++++.+  |
T Consensus       111 vl~~~p~y~~~~~~~~~~---g~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~  186 (367)
T PRK02731        111 VIYSEHGFAVYPIAAQAV---GAKPVEVPAK-DYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPD  186 (367)
T ss_pred             EEEecCCHHHHHHHHHHc---CCeEEEeccc-CCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCC
Confidence            999999998776655544   9999999884 466899999999998999999999999999999999999988874  9


Q ss_pred             cEEEEecccccCcc------ccccC-cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850         167 VIFHCDAAQAVGKI------DINIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       167 i~livD~a~~~~~~------~~~~~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
                      +++|+|++|.....      .++.. .....+++.|++|.+|.+|  +|+++++++..+.+......      +   ..+
T Consensus       187 ~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~~------~---~~~  257 (367)
T PRK02731        187 VLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQP------F---NVN  257 (367)
T ss_pred             cEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccCC------C---CCC
Confidence            99999999863221      11111 1134577889999666445  69999887655554433211      1   122


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHHHHhC--CcE
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAIK--DIA  314 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~--~i~  314 (397)
                      .....+..++++. ...+++..+.++++++++.+.|++ . ++.+.. +.   +.++++.++ ..++.++.+.|.  ||.
T Consensus       258 ~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-~~---g~~~~i~~~~~~~~~~~~~~L~~~gI~  330 (367)
T PRK02731        258 SLALAAAVAALDD-DAFVEKSRALNAEGMAWLTEFLAE-L-GLEYIP-SV---GNFILVDFDDGKDAAEAYQALLKRGVI  330 (367)
T ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCccCC-CC---ceEEEEECCCCCCHHHHHHHHHHCCEE
Confidence            3333333344432 234677788888999999999998 4 655542 22   456677774 346677877775  899


Q ss_pred             ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +.++..+..                   .++||++++   +.+++++++++|+++++
T Consensus       331 v~~~~~~~~-------------------~~~iRis~~---~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        331 VRPVAGYGL-------------------PNALRITIG---TEEENRRFLAALKEFLA  365 (367)
T ss_pred             EEeCCCCCC-------------------CCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence            988743321                   278999996   68999999999998764

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=6.8e-29  Score=231.72  Aligned_cols=306  Identities=16%  Similarity=0.161  Sum_probs=218.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEE-eCChhHHHHHHHHHhHhhhccCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW-TSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~-~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      .+++.+++++.+.+.....++..           ...++++.++++++++++++++ ++|+++++..++.++.    ++|
T Consensus        47 ~~~~~~~~~~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~----~~g  111 (361)
T PRK00950         47 GPSPKAVEAIEKELSKIHRYPEP-----------DAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFI----DPG  111 (361)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCC-----------CHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhc----CCC
Confidence            46788898888876653222211           1378999999999998889999 6788888999888876    789


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG  166 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g  166 (397)
                      ++|++++|.|+.+...++..   |.+++.++.+.++.+|++++++.++++++++++++++||||.++|.+++.++|+++|
T Consensus       112 d~vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~  188 (361)
T PRK00950        112 DEVIIPTPTFSYYEISAKAH---GAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILESTD  188 (361)
T ss_pred             CEEEEcCCChHHHHHHHHHc---CCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCC
Confidence            99999999988877665555   999999997777789999999999888999999999999999999999999999999


Q ss_pred             cEEEEecccccCcc-c-cc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHH
Q psy8850         167 VIFHCDAAQAVGKI-D-IN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQI  241 (397)
Q Consensus       167 i~livD~a~~~~~~-~-~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (397)
                      +++|+|++|..... . .. ....+..+++.|++|.+|.+|  +|+++++++....+......         ...+....
T Consensus       189 ~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~---------~~~~~~~~  259 (361)
T PRK00950        189 ALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTP---------FSLTRLSQ  259 (361)
T ss_pred             cEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcCC---------CCCCHHHH
Confidence            99999999973221 0 01 112234577889999777555  78888876554444332211         11223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccC
Q psy8850         242 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGS  319 (397)
Q Consensus       242 ~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~  319 (397)
                      .+...+++. .+.+++..++++++++++.+.|.     +.+.. +.   ..++++.++..+..++.+.|.  ||.+.+|.
T Consensus       260 ~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~l~-----~~~~~-~~---~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~  329 (361)
T PRK00950        260 AAAIAALSD-KEYIEKSIEHGIKSREYLYNELP-----FKVYP-SE---ANFVLVDVTPMTAKEFCEELLKRGVIVRDCT  329 (361)
T ss_pred             HHHHHHhcC-HHHHHHHHHHHHHHHHHHHhhcC-----eeECC-Cc---ceEEEEECCCCCHHHHHHHHHHCCEEEeeCC
Confidence            333344432 22355566666666666666553     33332 22   345667666567788887776  89998875


Q ss_pred             ccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .+..                 ..+++|||+++   +.+++++++++|++++
T Consensus       330 ~f~~-----------------~~~~~lRis~~---~~~~~~~l~~~L~~il  360 (361)
T PRK00950        330 SFRG-----------------LGDYYIRVSIG---TFEENERFLEILKEIV  360 (361)
T ss_pred             ccCC-----------------CCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence            4321                 12378999997   6789999999998864

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.97  E-value=1.2e-28  Score=228.65  Aligned_cols=312  Identities=15%  Similarity=0.102  Sum_probs=218.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++++.+.+++.+......      .|..    .....++++++++++    |  ++++ +|++|+|+++|+..++.+++ 
T Consensus        13 ~~~~~~~~~~~~~~~~~~------~Y~~----~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~-   81 (350)
T TIGR03537        13 PTPPFIRKALIDAVPEVS------QYPS----ALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI-   81 (350)
T ss_pred             CCCHHHHHHHHHHHhccC------CCCC----CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc-
Confidence            347788888887654321      1211    123345555555554    6  4566 89999999999999999887 


Q ss_pred             hhccCC---CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CC-CCCCHHHHHHHhcCCceEEEEecccCccccccc-
Q psy8850          81 FYKKRG---KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-  154 (397)
Q Consensus        81 ~~~~~g---~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~-  154 (397)
                         ++|   |+|+++.|+|+.+...+..+   |.+++.++.+ ++ ..+|++++++++.++++++++++++||||.++| 
T Consensus        82 ---~~g~~~d~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~  155 (350)
T TIGR03537        82 ---DPEEDRRRVIFGTPGYPVYERGALFA---GGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPR  155 (350)
T ss_pred             ---CCCCCCceEEEcCCCCcchHHHHHhc---CCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCH
Confidence               565   69999999999999988877   9999999986 33 458999999999989999999999999999999 


Q ss_pred             --HHHHHHHHHhcCcEEEEecccccC---ccccccCc--ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850         155 --ILEIGELCRSKGVIFHCDAAQAVG---KIDINIQN--YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       155 --l~~i~~l~~~~gi~livD~a~~~~---~~~~~~~~--~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~  225 (397)
                        +++|+++|++||+++|+|++|+..   ..+..+..  .+..+++.|++|.+|.+|  +|+++.+++....+...... 
T Consensus       156 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~-  234 (350)
T TIGR03537       156 SYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRAN-  234 (350)
T ss_pred             HHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHh-
Confidence              788899999999999999998732   21211221  234588889999766555  78888766555544433211 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChH
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE  304 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  304 (397)
                           +..+.++. ...++.+++.. .+.+.+.++++.++++.+.+.|++ . ++.+..+.+   +.++++.++. .+..
T Consensus       235 -----~~~~~~~~-~q~~~~~~l~~-~~~~~~~r~~l~~~~~~~~~~l~~-~-g~~~~~~~g---~~~~~~~~~~~~~~~  302 (350)
T TIGR03537       235 -----FGVASPDF-VQAAAKAAWSD-DNHVLERRKIFKRKRDLFIEFFNK-V-GLEYLYPDA---TFYLWVKVPSGIDAK  302 (350)
T ss_pred             -----hccCCCHH-HHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCe---EEEEEEECCCCCCHH
Confidence                 11122222 22222233331 234667788889999999999988 4 555444322   3345677764 3567


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      ++.+.|.  ||.+.+|..|...                 ..+++||++.  .+++++++++++|++
T Consensus       303 ~l~~~L~~~gv~v~~g~~f~~~-----------------~~~~~Ri~~~--~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       303 DYALRLLENGIVVAPGENFGSG-----------------EEGYVRVALV--PTLEECEEALRLWER  349 (350)
T ss_pred             HHHHHHHHCCEEEcCchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHhc
Confidence            7877775  9999998765330                 1378999986  478999999988875

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK12414 putative aminotransferase; Provisional

Probab=99.97  E-value=1.7e-28  Score=230.22  Aligned_cols=319  Identities=14%  Similarity=0.070  Sum_probs=222.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC---CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD---PREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++++.+.+++.+.+...    .. .|..........+.+++.+++++|++   +++|++|+|+++|+..++.++.    +
T Consensus        42 ~~~~~~~~~~~~~~~~~----~~-~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~----~  112 (384)
T PRK12414         42 APDPALVEGVARAMRDG----HN-QYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALV----H  112 (384)
T ss_pred             CCCHHHHHHHHHHHHhC----CC-CcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc----C
Confidence            45788899888876531    11 22222233456667777777788874   3579999999999999999887    7


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      +||+|++++|+|..+...+...   |.+++.+|.++ ++.+|++.+++++++++++|++++++||||.+++   +++|++
T Consensus       113 ~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~  189 (384)
T PRK12414        113 PGDEVIYFEPSFDSYAPIVRLQ---GATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQ  189 (384)
T ss_pred             CCCEEEEeCCCccchHHHHHHc---CCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHH
Confidence            9999999999999887777766   89999999874 5678999999999889999999999999999987   677888


Q ss_pred             HHHhcCcEEEEecccccCc----cccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccc
Q psy8850         161 LCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +|++||+++|+|++|....    ....+..    .+..+++.|++|.+|.+|  +|+++++++....+......      
T Consensus       190 ~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~------  263 (384)
T PRK12414        190 LTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQF------  263 (384)
T ss_pred             HHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhh------
Confidence            9999999999999997321    1111111    124588999999666555  78898887665554433211      


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CChHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLL  307 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  307 (397)
                       .....+.....++..+++.. ....+..+.++++++.+.+.|++ . ++.+..+.+   +.++++.++.   ....++.
T Consensus       264 -~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~~g---g~~~~~~~~~~~~~~~~~~~  336 (384)
T PRK12414        264 -MVFSADTPMQHAFAEALAEP-ASYLGLGAFYQRKRDLLARELAG-S-RFELLPSEG---SFFMLARFRHFSDESDSDFV  336 (384)
T ss_pred             -eecCCCcHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCc---ceEEEEcccccCCCCHHHHH
Confidence             01122333344443444321 12345677888999999999998 4 565554332   3345555543   2344555


Q ss_pred             -HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         308 -MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       308 -~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                       ..+.  ||.+.+|..|...               ....++|||+++.  +++++++.+++|.+
T Consensus       337 ~~~l~~~gV~v~pg~~f~~~---------------~~~~~~iRis~~~--~~~~~~~~~~rl~~  383 (384)
T PRK12414        337 LRLIRDARVATIPLSAFYTD---------------GTDTGLIRLSFSK--DDATLVEGARRLCS  383 (384)
T ss_pred             HHHHHhCCEEEecchhhcCC---------------CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence             3343  9999999766431               0113789999995  68999999888864

>PRK09082 methionine aminotransferase; Validated

Probab=99.97  E-value=8.3e-29  Score=232.70  Aligned_cols=320  Identities=14%  Similarity=0.089  Sum_probs=228.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CC-cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PR-EIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~-~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++++.+.+++.+.+....    . .|.......+..+.+.+.+.++++..  ++ +|++|+|+++|+.+++.++.    +
T Consensus        43 ~~~~~~~~~~~~~~~~~~----~-~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~----~  113 (386)
T PRK09082         43 DGPPYLVEALAYAMAAGH----N-QYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALV----R  113 (386)
T ss_pred             CCCHHHHHHHHHHHHcCC----C-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc----C
Confidence            346788888888765311    1 22222233455666777777777863  33 79999999999999999887    7


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      +||+|+++.++|+++...++..   |.+++.++.+ +++.+|+++++++++++++++++++++||||.+++   +++|.+
T Consensus       114 ~gd~Vli~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~  190 (386)
T PRK09082        114 PGDEVIVFDPSYDSYAPAIELA---GGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQ  190 (386)
T ss_pred             CCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence            9999999999999998888776   9999999997 45789999999999989999999999999999866   677899


Q ss_pred             HHHhcCcEEEEecccccCcc----ccc---cCc-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccc
Q psy8850         161 LCRSKGVIFHCDAAQAVGKI----DIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~----~~~---~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +|++||+++|+|++|+....    ...   ... .+..+++.|++|.+|.+|  +|+++++++....+......      
T Consensus       191 ~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~------  264 (386)
T PRK09082        191 LIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQY------  264 (386)
T ss_pred             HHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhh------
Confidence            99999999999999863221    111   111 245688999999766545  79999887665555443210      


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec---CCChHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN---FIEGESLL  307 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  307 (397)
                       .....+.....++...++...++++++++.++++++.+.+.|++  .++.+..+.+   +..+++.++   +.+..++.
T Consensus       265 -~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~  338 (386)
T PRK09082        265 -NTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALAN--SRFKLLPCEG---TYFQLVDYSAISDLDDVEFC  338 (386)
T ss_pred             -hcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh--CCCcccCCCe---eEEEEEeccccCCCCHHHHH
Confidence             01123333444444455423345777888899999999999988  4665544322   345566665   34567787


Q ss_pred             HHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         308 MAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       308 ~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      +.| .  +|.+.+|..|...               +.+.+++||+++.  +++++++.+++|++
T Consensus       339 ~~l~~~~~v~v~pg~~f~~~---------------~~~~~~~Ri~~~~--~~~~l~~~~~rl~~  385 (386)
T PRK09082        339 QWLTREHGVAAIPLSVFYAD---------------PFPHRLVRLCFAK--QEETLDAAAERLCQ  385 (386)
T ss_pred             HHHHHhCCEEEeCcHHhCCC---------------CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence            765 3  8999998755320               1124789999985  78899999988875

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.97  E-value=8.2e-29  Score=236.01  Aligned_cols=291  Identities=14%  Similarity=0.111  Sum_probs=215.3

Q ss_pred             HHHHHHHHHHHHhCC---CCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc
Q psy8850          42 AIEKARNEVAQLIYA---DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP  118 (397)
Q Consensus        42 ~~~~~~~~la~~~~~---~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~  118 (397)
                      ...++++.++++++.   ++++|++|+|+++|+.+++.++.    ++||.|++.+|+|+.+...+...   |.+++.+|.
T Consensus       122 g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~----~pgd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~  194 (431)
T PRK15481        122 VSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL----LPGDSVAVEDPCFLSSINMLRYA---GFSASPVSV  194 (431)
T ss_pred             CCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CCeEEeecc
Confidence            346677888888762   34589999999999999999988    89999999999999999888887   999999999


Q ss_pred             CCCCCCCHHHHHHHhcCCceEEEEe-cccCcccccccHH---HHHHHHHhc-CcEEEEecccccCcc--ccc-cC-cccc
Q psy8850         119 KNNGLITLSQLEEKICSDTILVSVM-LVNNEIGVIQPIL---EIGELCRSK-GVIFHCDAAQAVGKI--DIN-IQ-NYKV  189 (397)
Q Consensus       119 ~~~~~~d~~~l~~~i~~~~~~v~~~-~~~~~tG~~~~l~---~i~~l~~~~-gi~livD~a~~~~~~--~~~-~~-~~~~  189 (397)
                      ++++ +|++++++++++++++++++ ++|||||.+++.+   +|+++|+++ +++||+|++|+....  ... +. ..+.
T Consensus       195 ~~~g-~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~  273 (431)
T PRK15481        195 DAEG-MQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQR  273 (431)
T ss_pred             CCCC-CCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCC
Confidence            7665 89999999998888888776 9999999999965   899999999 999999999872211  011 11 1245


Q ss_pred             cEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFL  265 (397)
Q Consensus       190 d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~  265 (397)
                      .+++.|++|.+| +|  +|+++.+++....+......       .....+.....++..+++..  .+++.+.++.++++
T Consensus       274 vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~-------~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~  345 (431)
T PRK15481        274 WALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNS-------GTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQR  345 (431)
T ss_pred             EEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhc-------cccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            688999999666 35  78888876655554322111       01123444444444555432  23467788999999


Q ss_pred             HHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccC
Q psy8850         266 QKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAH  343 (397)
Q Consensus       266 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  343 (397)
                      ++.+.+.|++ . ++.+..+.+   +.++++.++. +..++...+.  ||.+.+|..|...                ..+
T Consensus       346 r~~~~~~L~~-~-~~~~~~p~g---g~f~~~~l~~-~~~~~~~~l~~~gV~v~pg~~f~~~----------------~~~  403 (431)
T PRK15481        346 RQKLARALQQ-Y-GIAIPSPGD---GLNLWLPLDT-DSQATALTLAKSGWLVREGEAFGVS----------------APS  403 (431)
T ss_pred             HHHHHHHHHH-c-CCccccCCC---eEEEEEECCC-CHHHHHHHHHHCCcEEecCCccccC----------------CCC
Confidence            9999999998 4 555433333   5566777764 4566766665  9999999766430                113


Q ss_pred             ceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         344 SSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       344 ~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +++||+++. .+++++++++++|.+++.
T Consensus       404 ~~iRis~~~-~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        404 HGLRITLST-LNDAEINRLAADLHQALN  430 (431)
T ss_pred             CeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence            689999986 569999999999998763

>PRK07550 hypothetical protein; Provisional

Probab=99.97  E-value=8.6e-29  Score=232.83  Aligned_cols=317  Identities=15%  Similarity=0.094  Sum_probs=223.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++.+.+...   ... .|..    .....++++++++++    |  .++++|++|+|+++|+.+++.++.  
T Consensus        42 ~~~~~~~~~~~~~~~~~---~~~-~Y~~----~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--  111 (386)
T PRK07550         42 PPPPELLRALAEAAADP---AAH-LYGP----VEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA--  111 (386)
T ss_pred             CCCHHHHHHHHHHHhCc---CCc-CCCC----CCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc--
Confidence            34677888877766421   011 2211    123445555555554    4  567889999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|++++|.|+.+...+...   |.+++.++.++  ++.+|+++++++++++++++++++|+||||.++|   ++
T Consensus       112 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~  186 (386)
T PRK07550        112 --GAGDEVILPLPWYFNHKMWLDML---GIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLH  186 (386)
T ss_pred             --CCCCEEEEcCCCCcchHHHHHhc---CCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHH
Confidence              79999999999998887766655   99999999974  3467999999999989999999999999999998   67


Q ss_pred             HHHHHHHhcCcEEEEecccccCc----ccccc-C--c-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGK----IDINI-Q--N-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~----~~~~~-~--~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      +|+++|++||++||+|++|+...    .+... .  . ....+++.|++|.+|.+|  +|+++++++....+......  
T Consensus       187 ~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~--  264 (386)
T PRK07550        187 ELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDT--  264 (386)
T ss_pred             HHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhh--
Confidence            89999999999999999987321    11111 1  1 123577899999555334  89999887655555433221  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGE  304 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  304 (397)
                          . ...++.....++..+++.+.++.++.++++.++++.+.+.|.+ .+++.+. +.+   +.++++.++  +.++.
T Consensus       265 ----~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~~g---~~~~~~~~~~~~~~~~  334 (386)
T PRK07550        265 ----V-AICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFAR-LPGWELL-ASG---AYFAYVRHPFPDRPSR  334 (386)
T ss_pred             ----c-ccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh-CCCceeC-CCc---eEEEEecCCCCCCCHH
Confidence                0 1123334444455566555556677788889999999999988 5565433 211   455666665  35677


Q ss_pred             HHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         305 SLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       305 ~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ++...| +  ||.+.+|..|..                 ...+++||+++. .+++++++++++|.++
T Consensus       335 ~l~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRis~~~-~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        335 EVARRLAKEAGILCLPGTMFGP-----------------GQEGYLRLAFAN-ADVAGIGELVERLRAF  384 (386)
T ss_pred             HHHHHHHHhcCEEEeCchhhCC-----------------CCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence            888775 2  899999876532                 113789999985 5699999999998765

>PRK07683 aminotransferase A; Validated

Probab=99.97  E-value=2.8e-28  Score=229.09  Aligned_cols=318  Identities=16%  Similarity=0.194  Sum_probs=225.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~--~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++++.+.+++.+.+....    . .|..    .....++|+.+++++    |.  +++ +|++|+|+++|+.+++.++. 
T Consensus        41 ~~~~~~~~a~~~~~~~~~----~-~Y~~----~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-  110 (387)
T PRK07683         41 PTPSHVKEAAKRAITENY----T-SYTH----NAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTIL-  110 (387)
T ss_pred             CCCHHHHHHHHHHHhcCC----C-CCCC----CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-
Confidence            446788899888876421    1 1211    223566677777766    43  666 89999999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                         ++||+|+++.+.|+.+...+..+   |.+++.++.+. +..+|.+++++.++++++++++++++||||.+++   ++
T Consensus       111 ---~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~  184 (387)
T PRK07683        111 ---EPGTEVILPAPIYPGYEPIIRLC---GAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQ  184 (387)
T ss_pred             ---CCCCEEEEcCCCccchHHHHHHc---CCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHH
Confidence               78999999999999988887776   99999999875 4467889999999889999999999999999988   67


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                      +|+++|+++|+++|+|++|.....   ...+..    .+..+++.|++|.+|.+|  +|+++++++..+.+.....    
T Consensus       185 ~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~----  260 (387)
T PRK07683        185 DIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQ----  260 (387)
T ss_pred             HHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHHHHHHHH----
Confidence            889999999999999999873321   111111    135688999999766445  7898888765555443211    


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGES  305 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  305 (397)
                         +.....+.....++...++.....+++.++++.++++.+.+.|.+ . ++.+..+.+   +.+++..++.  .++.+
T Consensus       261 ---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~---~~~~~~~~~~~~~~~~~  332 (387)
T PRK07683        261 ---YNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS-M-GLDVEKPTG---AFYLFPSIGHFTMSSFD  332 (387)
T ss_pred             ---hccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCCe---eEEEEEecccCCCCHHH
Confidence               111122223333333444432234667788888999999999988 4 555444332   3445555553  35566


Q ss_pred             HHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       306 ~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +...+ .  ||.+.+|..|..                 ...++|||+++.  +++++++++++|.+++.+
T Consensus       333 ~~~~ll~~~gI~v~pg~~f~~-----------------~~~~~~Ri~~~~--~~~~~~~al~~l~~~l~~  383 (387)
T PRK07683        333 FALDLVEEAGLAVVPGSAFSE-----------------YGEGYVRLSYAY--SIETLKEGLDRLEAFLQQ  383 (387)
T ss_pred             HHHHHHHhCCEEEcCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            66553 3  999999976543                 113789999985  789999999999988754

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.97  E-value=2.6e-28  Score=226.85  Aligned_cols=307  Identities=15%  Similarity=0.113  Sum_probs=216.7

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      .++|+.+++++.+.+....      .|..     ....++|+++++++++++++|++|+|+++++..++.++     .+|
T Consensus        32 ~~~p~~~~~a~~~~~~~~~------~y~~-----~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-----~~g   95 (356)
T PRK08056         32 LGMPVSLKRAIIDNLDCAE------RYPD-----VEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL-----KPR   95 (356)
T ss_pred             CCCCHHHHHHHHHHHHhcc------cCcC-----ccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-----CCC
Confidence            3578899999988775422      1111     13688999999999999999999999999999998875     356


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL  161 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l  161 (397)
                      + +++..|.|..+...++..   |.+++.+|.+++  ..+| +++++.+.+++++|++++|+||||.+++   +++|+++
T Consensus        96 ~-viv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~  170 (356)
T PRK08056         96 R-AMIVTPGFAEYRRALQQV---GCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAER  170 (356)
T ss_pred             C-EEEeCCCcHHHHHHHHHc---CCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHH
Confidence            5 566678888887776666   999999998643  3344 4566667788999999999999999999   6788999


Q ss_pred             HHhcCcEEEEecccccCcc----c-cccCcccccEEEeccccccCCCC--ceEEEEec-CCCCccccccccCCccccccC
Q psy8850         162 CRSKGVIFHCDAAQAVGKI----D-INIQNYKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRS  233 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~----~-~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~  233 (397)
                      |+++|++||+|++|.-...    . ..+...+.++++.|+||.+|.+|  +|++++++ +....+....         ..
T Consensus       171 a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~---------~~  241 (356)
T PRK08056        171 CKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQ---------MP  241 (356)
T ss_pred             HHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhC---------CC
Confidence            9999999999999852211    0 11223356789999999777555  78888743 3333332211         01


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--
Q psy8850         234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--  311 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  311 (397)
                      ...+.....+...+++. .....+..+.++++++++.+.|++ ++++.+..+ .   +..+++.++. +..++.+.|.  
T Consensus       242 ~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~-~---~~~~~~~~~~-~~~~~~~~l~~~  314 (356)
T PRK08056        242 WSINAFAALAGEVILQD-RAYQQATWQWLAEEGARFYQALCA-LPLLTVWPG-R---ANYLFLRCER-PDIDLQRALLTQ  314 (356)
T ss_pred             CchhHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEcCC-C---CcEEEEEcCC-ChHHHHHHHHHC
Confidence            12333333333334421 223566678889999999999988 777765432 2   4455666653 3566777765  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ||.+.+|..|..                 ...++|||+++   +.++.++++++|++++
T Consensus       315 gI~v~~~~~f~~-----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~  353 (356)
T PRK08056        315 RILIRSCANYPG-----------------LDSRYYRVAIR---SAAENERLLAALRNVL  353 (356)
T ss_pred             CeEEEECCCCCC-----------------CCCCEEEEEEc---CHHHHHHHHHHHHHHH
Confidence            999999875532                 11378999997   6899999999998764

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=2.6e-28  Score=227.74  Aligned_cols=310  Identities=15%  Similarity=0.116  Sum_probs=223.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++|+.+++++.+.......++..           ...++++++++++++++++|++++|+++++..++.++.    ++||
T Consensus        45 ~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~----~~gd  109 (369)
T PRK08153         45 GPSPSVIAAMREAAAEIWKYGDP-----------ENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV----EPGD  109 (369)
T ss_pred             CCCHHHHHHHHHHHHHhhcCCCC-----------ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCC
Confidence            56888999998876542222211           25689999999999988899999999999999999887    7999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHh-cCCceEEEEecccCcccccccHHHHHHHHHhc-
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQPILEIGELCRSK-  165 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~-  165 (397)
                      .|++.+|+|+.+...+...   |.+++.+|.+.++ +|++++++.+ .++++++++++|+||||.++|.+++.++++.. 
T Consensus       110 ~vlv~~p~y~~~~~~~~~~---g~~~~~vp~~~~~-~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~  185 (369)
T PRK08153        110 PVVTSLGAYPTFNYHVAGF---GGRLVTVPYRDDR-EDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALP  185 (369)
T ss_pred             EEEECCCcchHHHHHHHHc---CCeEEEeeCCCCC-CCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCC
Confidence            9999999999998777766   8999999987654 7899998766 46789999999999999999987777766543 


Q ss_pred             -CcEEEEecccccCcc---ccccC-cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850         166 -GVIFHCDAAQAVGKI---DINIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       166 -gi~livD~a~~~~~~---~~~~~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
                       |++||+|++|+....   ...+. ..+..+++.|++|.+|.+|  +|+++++++....+......         ...+.
T Consensus       186 ~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~~---------~~~s~  256 (369)
T PRK08153        186 ETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNH---------FGMNR  256 (369)
T ss_pred             CCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhcC---------CCCCH
Confidence             999999999872211   11111 1134588999999766445  69999886655544432211         12344


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHHHHHHhC--CcE
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAIK--DIA  314 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~  314 (397)
                      ....+..++++. .+.+++..+.+.++++++.+.|++ . ++.+. +..   +.++++.++.  ....++.+.+.  ||.
T Consensus       257 ~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~L~~-~-g~~~~-p~~---~~f~~~~~~~~~~~a~~l~~~l~~~Gi~  329 (369)
T PRK08153        257 IAQAAALAALKD-QAYLAEVVGKIAAARDRIAAIARA-N-GLTPL-PSA---TNFVAIDCGRDGAFARAVLDGLIARDIF  329 (369)
T ss_pred             HHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCccC-CCc---CcEEEEECCCCcccHHHHHHHHHHCCeE
Confidence            555555556642 234677788888999999999987 4 54433 212   4455555532  23567777664  888


Q ss_pred             ec-ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         315 VS-SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       315 ~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +. ++...                    ..+++|++++   +++++++++++|++++...++
T Consensus       330 v~~p~~~~--------------------~~~~iRis~~---~~~~~~~~~~al~~~~~~~~~  368 (369)
T PRK08153        330 VRMPGVAP--------------------LDRCIRVSCG---PDEELDLFAEALPEALEAARK  368 (369)
T ss_pred             EeeCCCCC--------------------CCCeEEEecC---CHHHHHHHHHHHHHHHHHhhc
Confidence            84 43210                    1378999997   689999999999999876654

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.97  E-value=3.5e-28  Score=231.07  Aligned_cols=300  Identities=16%  Similarity=0.167  Sum_probs=225.6

Q ss_pred             HHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEE
Q psy8850          41 KAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT  114 (397)
Q Consensus        41 ~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~  114 (397)
                      .....+|+.+++++    |  +++++|++|+|+++|++++++.+.    ++||.|++.+|+|+.....++.+   |.++.
T Consensus       132 ~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~----~pGd~v~vE~PtY~~~~~~~~~~---g~~~~  204 (459)
T COG1167         132 AGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLL----DPGDTVLVEDPTYPGALQALEAL---GARVI  204 (459)
T ss_pred             CCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhC----CCCCEEEEcCCCcHHHHHHHHHc---CCcEE
Confidence            45566666666665    3  466799999999999999999998    89999999999999999888888   99999


Q ss_pred             EeccCCCCCCCHHHHHHHhcC-CceEE-EEecccCcccccccH---HHHHHHHHhcCcEEEEecccccCcc----c---c
Q psy8850         115 YLKPKNNGLITLSQLEEKICS-DTILV-SVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI----D---I  182 (397)
Q Consensus       115 ~v~~~~~~~~d~~~l~~~i~~-~~~~v-~~~~~~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~----~---~  182 (397)
                      .||.|++| +|+++|++.+.. +++++ ++++.+||||.+++.   ++|.++|++||++||+|+.|+-...    +   .
T Consensus       205 ~vp~d~~G-~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~  283 (459)
T COG1167         205 PVPVDEDG-IDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLK  283 (459)
T ss_pred             ecCCCCCC-CCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChH
Confidence            99999777 899999999876 57766 566888999999997   5799999999999999999982211    1   1


Q ss_pred             ccCcccccEEEeccccccCC-CCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHH--HHHHHHHHHH
Q psy8850         183 NIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR--LARIEMKEEL  259 (397)
Q Consensus       183 ~~~~~~~d~~~~s~~K~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~--~~~~~~~~~~  259 (397)
                      .+...+..+++.||+|...| ..+||++++++..+.+......       ....++......+...+.  ....++.+++
T Consensus       284 ~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~-------~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR  356 (459)
T COG1167         284 ALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQA-------ADLGPSSLSQAALAAFLLSGHYDRHLRRLR  356 (459)
T ss_pred             hhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHHH-------hcCCCChHHHHHHHHHHHcCCHHHHHHHHH
Confidence            12223577999999995443 3589999997766665433211       111233333333333443  3455788999


Q ss_pred             HHHHHHHHHHHHHHhhhcC-cEEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC--CcEecc-cCccCCCCCChhhHHHh
Q psy8850         260 KRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFNFI-EGESLLMAIK--DIAVSS-GSACTSASLEPSYVLRA  334 (397)
Q Consensus       260 ~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~-g~~~~~~~~~~~~~~~~  334 (397)
                      +.++++++.+.+.|.++++ ...+..+.+   +.++++.++.. +...+...+.  |+.+.+ |..|....         
T Consensus       357 ~~y~~rr~~l~~~L~~~~~~~~~~~~p~g---G~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~---------  424 (459)
T COG1167         357 REYARRRDALLEALAEYLPELATWTRPEG---GLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADG---------  424 (459)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeeeecCCc---eEEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCCC---------
Confidence            9999999999999999666 455555544   56778888753 6666666655  888888 87776521         


Q ss_pred             hCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         335 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       335 ~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                            ...+++|++++. .+.+++++.+..|.+++.+..
T Consensus       425 ------~~~~~~Rl~~s~-~~~e~i~~gi~~l~~~~~~~~  457 (459)
T COG1167         425 ------DPRNGLRLSFSS-PSEEEIEEGIKRLAALLREAA  457 (459)
T ss_pred             ------CCCCeEEEEcCC-CCHHHHHHHHHHHHHHHHHHh
Confidence                  124799999997 579999999999999988764

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.97  E-value=2.2e-28  Score=230.66  Aligned_cols=322  Identities=11%  Similarity=0.018  Sum_probs=219.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC---CCCC-cEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPR-EIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~-~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      ++++.+.+++.+.+.....      |.......+..+.+.+.+.+.+|   ++++ +|++|+|+++|+.+++.++.    
T Consensus        42 ~~~~~~~~~~~~~~~~~~~------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----  111 (396)
T PRK09147         42 PTPAFIKDALAANLDGLAS------YPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI----  111 (396)
T ss_pred             CCCHHHHHHHHHHhhhhcC------CCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc----
Confidence            4577888888876643222      22111122333344444444446   4554 79999999999999999988    


Q ss_pred             cC---CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850          84 KR---GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        84 ~~---g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l  155 (397)
                      ++   |+.|+++.|.|+.+...+...   |.+++.+|++++  +.+|++++++.+.++++++++++|+||||.+++   +
T Consensus       112 ~~~~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~  188 (396)
T PRK09147        112 DRDGPGPLVVCPNPFYQIYEGAALLA---GAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDW  188 (396)
T ss_pred             CCCCCCCEEEEcCCCccchHHHHHhc---CCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHH
Confidence            78   899999999999998887777   999999999743  478999999888888999999999999999998   5


Q ss_pred             HHHHHHHHhcCcEEEEecccccCc-----cccc-c--------CcccccEEEeccccccCCCC--ceEEEEecCCCCccc
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGK-----IDIN-I--------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIE  219 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~-----~~~~-~--------~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~  219 (397)
                      ++|+++|++|+++||+|++|+...     .+.. +        ...+..+++.|++|.+|.+|  +|+++.+++..+.+.
T Consensus       189 ~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~  268 (396)
T PRK09147        189 KKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFL  268 (396)
T ss_pred             HHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHHHHHH
Confidence            678888999999999999997321     1110 0        11234588999999655445  788888766555543


Q ss_pred             cccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec
Q psy8850         220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN  299 (397)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (397)
                      ....       ......+.....+..+++.. .+.+.+.++.++++++.+.+.|++ .  +.+..+.+   +.++++.++
T Consensus       269 ~~~~-------~~~~~~~~~~q~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~-~--~~~~~p~~---g~f~~~~~~  334 (396)
T PRK09147        269 LYRT-------YHGCAMPPAVQAASIAAWND-EAHVRENRALYREKFDAVTPILAP-V--LDVQLPDA---GFYLWAKVP  334 (396)
T ss_pred             HHhh-------hcccCCCHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHH-h--cCCCCCCe---eEEEEEECC
Confidence            3211       01112233333332233321 235677788888999999999887 3  33332322   556677776


Q ss_pred             CCChHHHHHHh--C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         300 FIEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       300 ~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                       .+..++...+  + ||.+.+|..|....         .+  ...+.+++||+++.  +++++++++++|.+++
T Consensus       335 -~~~~~~~~~ll~~~gv~v~pg~~f~~~~---------~~--~~~~~~~iRi~~~~--~~~~l~~~l~rl~~~~  394 (396)
T PRK09147        335 -GDDTEFARRLYADYNVTVLPGSYLAREA---------HG--VNPGAGRVRIALVA--PLAECVEAAERIVDFC  394 (396)
T ss_pred             -CCHHHHHHHHHHhCCEEEeCCccccccc---------cC--CCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence             4566776665  2 89999997664310         00  01124789999985  6889999999998765

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.97  E-value=2.1e-28  Score=230.51  Aligned_cols=315  Identities=15%  Similarity=0.094  Sum_probs=220.4

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C---CCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~---~~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      +++.+.+++.+.+....   .. .|.     .....++++++++++    |   ++++ +|++|+|+++++..++.++. 
T Consensus        58 ~~~~~~~~l~~~~~~~~---~~-~Y~-----~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~-  127 (410)
T PRK06290         58 ADESVVEVLCEEAKKPE---NR-GYA-----DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFI-  127 (410)
T ss_pred             CCHHHHHHHHHHHhCCC---CC-CCC-----CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhC-
Confidence            56778888777653210   00 121     123456666666664    4   5565 79999999999999999888 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l  155 (397)
                         ++||.|+++.|+|+.+...++..   |.+++.+|.++  ++.+|++++++++.+++++|++++|+||||.+++   +
T Consensus       128 ---~~gd~Vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l  201 (410)
T PRK06290        128 ---NPGDVTLMTVPGYPVTGTHTKYY---GGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFY  201 (410)
T ss_pred             ---CCCCEEEEeCCCCccHHHHHHHc---CCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHH
Confidence               79999999999999998877777   99999999974  3567999999999889999999999999999999   4


Q ss_pred             HHHHHHHHhcCcEEEEecccccCc---cccc---cC-cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGK---IDIN---IQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~---~~~~---~~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      ++|+++|++||++||+|++|....   .+..   +. ..+.++++.|++|.+|.+|  +|+++.+++....+......  
T Consensus       202 ~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~--  279 (410)
T PRK06290        202 EEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDN--  279 (410)
T ss_pred             HHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHhc--
Confidence            678888999999999999998322   1111   11 1245799999999666555  79999887655554432211  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC------
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF------  300 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------  300 (397)
                          ...+.+. ....+...+++. .+.+++..+++.++++.+.+.|++ + ++.+..+.+   ...+++.++.      
T Consensus       280 ----~~~~~~~-~~q~aa~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~g---~f~l~v~lp~~~~~~~  348 (410)
T PRK06290        280 ----NDSGQFI-AIQKAGIYALDH-PEITEKIREKYSRRLDKLVKILNE-V-GFKAEMPGG---TFYLYVKAPKGTKSGI  348 (410)
T ss_pred             ----cccCCcH-HHHHHHHHHhhC-cHHHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCe---eeEEEEECCCccccCC
Confidence                1111212 222233344432 234677788899999999999998 4 666554433   3344566653      


Q ss_pred             --CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC-CCCHHHHHHHHHHHHHHHHHH
Q psy8850         301 --IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       301 --~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~-~~~~~~i~~~~~~l~~~~~~~  373 (397)
                        .+..++.+.|.   ++.+.+|..+                     ++++||+++. ..++++.++++++|.+.+.++
T Consensus       349 ~~~~~~~~~~~Ll~~~~v~~~p~~~~---------------------~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        349 KFENAEEFSQYLIKEKLISTVPWDDA---------------------GHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             CCCCHHHHHHHHHHhCCEEEECCccc---------------------cCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence              24667777775   3555554311                     2689999973 357899999999999887654

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.97  E-value=2.8e-28  Score=230.25  Aligned_cols=319  Identities=15%  Similarity=0.123  Sum_probs=218.1

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChhHHHHHHHHHhHhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~-~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +|+.+.+++.+.....   ... .|    .......++|+.+++++    +  +.++ +|++|+|+++|+.+++.+++  
T Consensus        47 ~~~~~~~~~~~~~~~~---~~~-~Y----~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~--  116 (403)
T PRK08636         47 TPQHIIDKLCESAQKP---KTH-GY----SVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT--  116 (403)
T ss_pred             CCHHHHHHHHHHhcCC---ccC-CC----CCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC--
Confidence            3555666666554320   011 12    22234455555555554    6  4566 69999999999999999988  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHH----HHHHhc---CCceEEEEecccCccccc
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQ----LEEKIC---SDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~----l~~~i~---~~~~~v~~~~~~~~tG~~  152 (397)
                        ++||.|++.+|+|+.+...+...   |.+++.+|.+  +++.+|++.    ++++++   .+++++++++|+||||.+
T Consensus       117 --~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~  191 (403)
T PRK08636        117 --NPGDVAIVPDPAYPIHSQAFILA---GGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTAT  191 (403)
T ss_pred             --CCCCEEEEcCCCCcchHHHHHhc---CCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCcc
Confidence              79999999999999998888877   9999999874  345788775    455554   468899999999999999


Q ss_pred             ccH---HHHHHHHHhcCcEEEEecccccCcc----ccccCcc----cccEEEeccccccCCCC--ceEEEEecCCCCccc
Q psy8850         153 QPI---LEIGELCRSKGVIFHCDAAQAVGKI----DINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIE  219 (397)
Q Consensus       153 ~~l---~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~----~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~  219 (397)
                      ++.   ++|+++|++|+++||+|++|+....    ...+..+    +..+++.|++|.+|.+|  +|+++.++++...+.
T Consensus       192 ~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~  271 (403)
T PRK08636        192 VEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGALK  271 (403)
T ss_pred             CCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHHHH
Confidence            995   6788899999999999999873211    1111111    23456789999665445  799888776555544


Q ss_pred             cccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec
Q psy8850         220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN  299 (397)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (397)
                      .....      ...+.+...+.++. .+++.....+++.++.+.++++.+.+.|++ . ++.+..+.+   +..+++.++
T Consensus       272 ~~~~~------~~~~~~~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~---g~~~~~~l~  339 (403)
T PRK08636        272 KIKSW------LDYGMFTPIQVAAT-IALDGDQSCVEEIRETYRKRRDVLIESFAN-A-GWELQKPRA---SMFVWAKIP  339 (403)
T ss_pred             HHHHH------hcccCChHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCc---ceEEEEECC
Confidence            33210      01122333333333 444433445777888899999999999988 4 555444333   556677776


Q ss_pred             C----CChHHHHHH-hC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         300 F----IEGESLLMA-IK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       300 ~----~~~~~~~~~-l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .    .++.++... ++  ||.+.+|..|..                 ...++|||+++  .+++++++.+++|+++++.
T Consensus       340 ~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~-----------------~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~  400 (403)
T PRK08636        340 EPARHLGSLEFSKQLLTEAKVAVSPGIGFGE-----------------YGDEYVRIALI--ENENRIRQAARNIKKFLKE  400 (403)
T ss_pred             CccCCCCHHHHHHHHHHhCCEEEecchhhCc-----------------CCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence            3    235677655 42  899999876532                 11379999997  4899999999999998866


Q ss_pred             H
Q psy8850         373 L  373 (397)
Q Consensus       373 ~  373 (397)
                      +
T Consensus       401 ~  401 (403)
T PRK08636        401 L  401 (403)
T ss_pred             h
Confidence            3

>PRK06855 aminotransferase; Validated

Probab=99.97  E-value=2.4e-28  Score=232.15  Aligned_cols=327  Identities=15%  Similarity=0.164  Sum_probs=217.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++|+.+.+++.+.+...        ..++|.......++|+++++++    |  +++++|++|+|+++|+.+++. ++  
T Consensus        48 ~~p~~~~~a~~~~~~~~--------~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~--  116 (433)
T PRK06855         48 KIPDWMKEIVAELVMDD--------KSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LL--  116 (433)
T ss_pred             CCCHHHHHHHHHHhhcC--------CCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hc--
Confidence            56888888888876431        1111222234566677776665    4  567789999999999998875 55  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhc--CCceEEEEecccCccccccc---
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQP---  154 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~--~~~~~v~~~~~~~~tG~~~~---  154 (397)
                        ++||.|++.+|+|+.+......  ..|.+++.+|.++  ++.+|+++|++++.  ++++++++++|+||||.+++   
T Consensus       117 --~~Gd~Vlv~~P~Y~~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~  192 (433)
T PRK06855        117 --RREARVIGPSPAYSTHSSAEAA--HAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEI  192 (433)
T ss_pred             --CCCCeEEEeCCCCchHHHHHHH--hcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHH
Confidence              7899999999999986533221  2278888888863  34689999999986  46789999999999999999   


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCcc----ccccCcc---cccEEEeccccccCCCC--ceEEEEecCCC-Ccccccccc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNY---KVDLMSFSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHG  224 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~---~~d~~~~s~~K~~g~~g--~g~~~~~~~~~-~~~~~~~~~  224 (397)
                      +++|+++|++||++||+|++|+....    ...+..+   ...+++.|++|.++.+|  +|++++.+... ..+......
T Consensus       193 ~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~  272 (433)
T PRK06855        193 LREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINS  272 (433)
T ss_pred             HHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHH
Confidence            46788889999999999999973211    1111111   23488899999655334  78888742111 111100000


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-  301 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  301 (397)
                      .........+ ++.....++..+++.  ..+.+++.++.++++++.+.+.|++ ++++.+..+.+   +..+++.+++. 
T Consensus       273 ~~~~~~~~~~-~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~-~~~~~~~~p~g---g~~~w~~l~~~~  347 (433)
T PRK06855        273 ILNAKMIEVC-STTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKD-VPGLKVNRTNG---AFYMTVVFEDGV  347 (433)
T ss_pred             HHHhhccccC-CChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeccCCCe---eEEEeecccccc
Confidence            0000001112 333444444455542  2345778888999999999999988 66766554433   45666666531 


Q ss_pred             ---------------------------ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC
Q psy8850         302 ---------------------------EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG  351 (397)
Q Consensus       302 ---------------------------~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~  351 (397)
                                                 ++.++...+.   ||.+.||..|.+                  ..+.+||++.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~------------------~~~~~Rls~~  409 (433)
T PRK06855        348 LNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCT------------------ELNGFRVTLL  409 (433)
T ss_pred             ccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCC------------------CCCceEEEEC
Confidence                                       2334443332   899999987643                  0145999998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q psy8850         352 RFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       352 ~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      . .+.+++++.+++|.++++++
T Consensus       410 ~-~~~~~i~~~~~~l~~~~~~~  430 (433)
T PRK06855        410 E-RDEEKFEWIYQTLAEKIEEY  430 (433)
T ss_pred             C-CcHHHHHHHHHHHHHHHHHH
Confidence            7 57999999999999998753

>PRK09148 aminotransferase; Validated

Probab=99.97  E-value=2.3e-28  Score=230.78  Aligned_cols=322  Identities=14%  Similarity=0.077  Sum_probs=220.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++|+.+.+++.+.+..    +....|..    .....++++.+++++    |  ++++ +|++|+|+++|+.+++.++. 
T Consensus        43 ~~~~~~~~~~~~~~~~----~~~~~Y~~----~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-  113 (405)
T PRK09148         43 PTPQHIVDKLCETAQD----PRTHRYSA----SKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT-  113 (405)
T ss_pred             CCCHHHHHHHHHHHcC----cccCCCCC----CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc-
Confidence            3467788887776532    11102221    223455666666655    5  4566 79999999999999999987 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHh---cCCceEEEEecccCcccccccH--
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI---CSDTILVSVMLVNNEIGVIQPI--  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i---~~~~~~v~~~~~~~~tG~~~~l--  155 (397)
                         ++||.|++++|+|+.+...+...   |.++..+|.+.++. +++++++++   .++++++++++|+||||.+++.  
T Consensus       114 ---~~gd~Vl~~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~-~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~  186 (405)
T PRK09148        114 ---APGDVILCPNPSYPIHAFGFIMA---GGVIRSVPAEPDEE-FFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDF  186 (405)
T ss_pred             ---CCCCEEEEcCCCCcccHHHHHhc---CCEEEEEeCCCCCC-CccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHH
Confidence               79999999999999998777766   99999999875432 244455444   4678999999999999999995  


Q ss_pred             -HHHHHHHHhcCcEEEEecccccCc----cccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCcccccccc
Q psy8850         156 -LEIGELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG  224 (397)
Q Consensus       156 -~~i~~l~~~~gi~livD~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~  224 (397)
                       ++|+++|++||++||+|++|+...    ....+..    .+..+++.|++|.+|.+|  +|+++.+++..+.+..... 
T Consensus       187 l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~-  265 (405)
T PRK09148        187 YKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKS-  265 (405)
T ss_pred             HHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHHHHH-
Confidence             678889999999999999997321    1111111    124567899999777556  7999887766555543221 


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC----
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF----  300 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----  300 (397)
                            ....+.+.....++..+++.....+++.++.++++++.+.+.|++ . ++.+..+..   +.++++.++.    
T Consensus       266 ------~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~~p~~---g~f~~~~l~~~~~~  334 (405)
T PRK09148        266 ------YLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGR-A-GWDIPPPAA---SMFAWAPIPEAFRH  334 (405)
T ss_pred             ------HhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-c-CCccCCCCe---eEEEEEECCCccCC
Confidence                  001122233333333455432345777888999999999999988 4 554333322   4456666653    


Q ss_pred             CChHHHHHHh--C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         301 IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       301 ~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      .+..++...+  . ||.+.+|..|..                 ...+++||+++  .+.+++++++++|.+++.++.|.
T Consensus       335 ~~~~~~~~~ll~~~gV~v~pg~~f~~-----------------~~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~~~~  394 (405)
T PRK09148        335 LGSLEFSKLLVEKADVAVAPGVGFGE-----------------HGDGYVRIALV--ENEQRIRQAARNIKRFLSSADET  394 (405)
T ss_pred             CCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCeEEEEec--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            1345666553  2 999999975532                 01378999997  47899999999999999888774

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.97  E-value=8.4e-28  Score=241.32  Aligned_cols=307  Identities=13%  Similarity=0.133  Sum_probs=231.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChh----HHHHHHHHHhHhhhccCCC----EEEEcCCCChhhHHHHHHHhhCC
Q psy8850          39 AEKAIEKARNEVAQLIYADPREIIWTSGAT----ESNNLAIKGAAHFYKKRGK----HIITVQTEHKSVLDSIRKLENDG  110 (397)
Q Consensus        39 ~~~~~~~~~~~la~~~~~~~~~i~~~~g~t----~a~~~~l~~l~~~~~~~g~----~vl~~~~~~~s~~~~~~~~~~~g  110 (397)
                      ..+.+.++++.+++++|+  +.|.|+++++    +|++++++++..   .+|+    +|+++..+|+++..++...   |
T Consensus       566 ~~~~~~~~r~~la~i~g~--~~v~f~pnaga~ge~a~~~vi~~~~~---~~Gd~~r~~vli~~~aH~sn~a~a~~~---G  637 (993)
T PLN02414        566 YQEMFEDLGDLLCEITGF--DSFSLQPNAGAAGEYAGLMVIRAYHL---SRGDHHRNVCIIPVSAHGTNPASAAMC---G  637 (993)
T ss_pred             HHHHHHHHHHHHHHHhCC--CeEEEcCCCcHHHHHHHHHHHHHHHh---ccCCCCCCEEEeCCCcCccCHHHHHHC---C
Confidence            346888999999999999  4899999999    899999998863   3366    9999999999999998886   9


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc-ccccCc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-DINIQN  186 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~-~~~~~~  186 (397)
                      ++++.+|++++|.+|+++|++++++   ++++|++++++|.+|...|+++|.++||++|+++++|+++..+.. ..+...
T Consensus       638 ~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~  717 (993)
T PLN02414        638 MKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGF  717 (993)
T ss_pred             CEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccc
Confidence            9999999999999999999999984   789999999999999999999999999999999999999987773 445567


Q ss_pred             ccccEEEecccc-ccCC-----CCceEEEEecCCCCcccccccc--CCcccccc---CCCCch---hHHHHHHHHHHHH-
Q psy8850         187 YKVDLMSFSAHK-IYGP-----KGIGALYIRRNPRTRIEAQIHG--GGHEYGLR---SGTLAT---HQIVGMGEAFRLA-  251 (397)
Q Consensus       187 ~~~d~~~~s~~K-~~g~-----~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~---~~~~~l~~al~~~-  251 (397)
                      +++|++++|.|| +++|     +|+|++++++++...+.....+  .....++.   .|+.+.   .+...+..+..++ 
T Consensus       718 ~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~  797 (993)
T PLN02414        718 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIA  797 (993)
T ss_pred             cCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHH
Confidence            899999999999 7644     4599999997655444322111  11111112   345332   1223333444443 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec------CCChHHHHHHhC--CcEecccCc
Q psy8850         252 ---RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN------FIEGESLLMAIK--DIAVSSGSA  320 (397)
Q Consensus       252 ---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~--~i~~~~g~~  320 (397)
                         .+++++..++...++.++++.|.+ ..++.+.++.+ ...+-+.+.++      +.+..++.++|.  |+....-  
T Consensus       798 ~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~-~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~--  873 (993)
T PLN02414        798 MMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNG-TCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTM--  873 (993)
T ss_pred             HHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCC-CeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeee--
Confidence               346888899999999999999987 44544443322 11233444444      245578888876  5443221  


Q ss_pred             cCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         321 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ..+                  ..+.+||+++.+.+++|+|+++++|..+..++++
T Consensus       874 ~~p------------------v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~  910 (993)
T PLN02414        874 SWP------------------VPGTLMIEPTESESKAELDRFCDALISIREEIAD  910 (993)
T ss_pred             ccc------------------cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence            111                  1388999999999999999999999999999987

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.97  E-value=5e-28  Score=227.89  Aligned_cols=322  Identities=14%  Similarity=0.122  Sum_probs=221.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++.+.+....... . .|    .......++++.++++++      +++++|++|+|+++++..++.++.  
T Consensus        46 ~~~~~v~~a~~~~~~~~~~~~-~-~y----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--  117 (394)
T PRK06836         46 PPPAAVKEALRELAEEEDPGL-H-GY----MPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL--  117 (394)
T ss_pred             CCCHHHHHHHHHHHhcCCcCc-c-cC----CCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc--
Confidence            457889998887775421111 1 12    222346667777777764      467899999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCccccccc---HHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE  157 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~  157 (397)
                        ++||.|++++++|+.+....+..   |.+++.++.+++ +.+|+++++++++++++++++++++||||.++|   +++
T Consensus       118 --~~gd~Vli~~p~~~~~~~~~~~~---g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~  192 (394)
T PRK06836        118 --NPGDEVIVFAPYFVEYRFYVDNH---GGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKA  192 (394)
T ss_pred             --CCCCEEEEcCCCCccHHHHHHHc---CCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHH
Confidence              78999999999999987766655   999999999765 679999999999999999999999999999999   466


Q ss_pred             HHHHHHh------cCcEEEEecccccCcc----ccc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCcccccccc
Q psy8850         158 IGELCRS------KGVIFHCDAAQAVGKI----DIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG  224 (397)
Q Consensus       158 i~~l~~~------~gi~livD~a~~~~~~----~~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~  224 (397)
                      |+++|++      ||+++|+|++|.....    ... ....+..+++.|++|.+|.+|  +|++++++...+. ......
T Consensus       193 l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~-~~~~~~  271 (394)
T PRK06836        193 LAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDA-DDLVAA  271 (394)
T ss_pred             HHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHHHhhh-HHHHHH
Confidence            7788998      8999999999872211    111 122345788999999666444  7898887654221 111100


Q ss_pred             CCcccccc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCCh
Q psy8850         225 GGHEYGLR-SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEG  303 (397)
Q Consensus       225 ~~~~~~~~-~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (397)
                      ........ ....+.....++...++   +.  ...+.++++++.+.+.|++ . ++.+..+.+   +..+++.++..+.
T Consensus       272 ~~~~~~~~~~~~~~~~~q~~~~~~l~---~~--~~~~~~~~~r~~l~~~L~~-~-g~~~~~~~g---g~~~~~~~~~~~~  341 (394)
T PRK06836        272 LVFANRILGFVNAPALMQRVVAKCLD---AT--VDVSIYKRNRDLLYDGLTE-L-GFECVKPQG---AFYLFPKSPEEDD  341 (394)
T ss_pred             HHHHhhccccccCCHHHHHHHHHHhC---Ch--HHHHHHHHHHHHHHHHHHh-C-CCEeecCCc---eEEEEEeCCCCCH
Confidence            00000000 00122222233223332   21  1245677788889999988 4 565554432   3455566665566


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      .++...+.  ||.+.+|..|..                   .+++||+++  .++++++..+++|++++++++
T Consensus       342 ~~~~~~l~~~gv~v~~g~~f~~-------------------~~~iRi~~~--~~~~~~~~~i~~l~~~l~~~~  393 (394)
T PRK06836        342 VAFCEKAKKHNLLLVPGSGFGC-------------------PGYFRLSYC--VDTETIERSLPAFEKLAKEYK  393 (394)
T ss_pred             HHHHHHHHhCCEEEECchhcCC-------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHHhc
Confidence            77776665  899999865532                   278999998  479999999999999987663

>PRK07908 hypothetical protein; Provisional

Probab=99.97  E-value=5.8e-28  Score=224.10  Aligned_cols=303  Identities=17%  Similarity=0.159  Sum_probs=216.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++|+.+++++.+.+.....+|.          .....++|+++++++++++++|++|+|+++|+.+++. +     +++ 
T Consensus        35 ~~~~~~~~~~~~~~~~~~~Y~~----------~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l-----~~~-   97 (349)
T PRK07908         35 TPPEWLRERLAARLGDLAAYPS----------TEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-L-----RPR-   97 (349)
T ss_pred             CCCHHHHHHHHHHhhHhhcCCC----------ccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-c-----CCC-
Confidence            4688899999988755322221          2346789999999999999999999999999998887 3     454 


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCc
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV  167 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi  167 (397)
                      .+++..|+|..+...++..   |.+++.+|.++++.+|++.+    .++++++++++++||||.++|.++|.++|++ +.
T Consensus        98 ~viv~~P~y~~~~~~~~~~---G~~i~~v~~~~~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~  169 (349)
T PRK07908         98 RAAVVHPSFTEPEAALRAA---GIPVHRVVLDPPFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQLLALRRP-GR  169 (349)
T ss_pred             eEEEeCCCChHHHHHHHHc---CCEEEeeccCcccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CC
Confidence            5666788888877666555   99999999987677888754    4578999999999999999999999999975 78


Q ss_pred             EEEEeccccc--CccccccC--cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHH
Q psy8850         168 IFHCDAAQAV--GKIDINIQ--NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQI  241 (397)
Q Consensus       168 ~livD~a~~~--~~~~~~~~--~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (397)
                      ++|+|++|+.  ...+.++.  ..+..+++.|+||.+|.+|  +|+++++++..+.+......         ...+....
T Consensus       170 ~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~---------~~~~~~~~  240 (349)
T PRK07908        170 ILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAH---------WPVGTLQL  240 (349)
T ss_pred             EEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCC---------CCccHHHH
Confidence            8999999862  11122222  1233566779999666445  69999887666655443221         12223333


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEeccc
Q psy8850         242 VGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSG  318 (397)
Q Consensus       242 ~~l~~al~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g  318 (397)
                      .++...++ ...+++++.+++++++++++.+.|++ + ++.+..+..   +.++++.+++  ...+...++  +|.+.+|
T Consensus       241 ~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~~p~~---g~~~~~~~~~--~~~~~~~l~~~gI~v~~g  313 (349)
T PRK07908        241 EAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA-V-GARVVDPAA---APFVLVRVPD--AELLRKRLRERGIAVRRG  313 (349)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh-C-CcEeccCCC---ceEEEEECCc--HHHHHHHHHhCCEEEEEC
Confidence            33333333 12235677888999999999999998 5 666665433   5566777664  456666665  8999998


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ..|..                 ...++|||++.   +++++++++++|++++.
T Consensus       314 ~~f~~-----------------~~~~~vRis~~---~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        314 DTFPG-----------------LDPDYLRLAVR---PRAEVPVLVQALAEILK  346 (349)
T ss_pred             CCCCC-----------------CCCCeEEEEeC---CCccHHHHHHHHHHHHh
Confidence            75532                 01389999996   68899999999988754

>PRK09265 aminotransferase AlaT; Validated

Probab=99.97  E-value=4.2e-28  Score=229.30  Aligned_cols=323  Identities=14%  Similarity=0.111  Sum_probs=218.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++.+.+....      .|    .......++++++++++      ++++++|++++|+++++.+++.++.  
T Consensus        49 ~~~~~i~~~~~~~~~~~~------~Y----~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~--  116 (404)
T PRK09265         49 EAPDEILRDVIRNLPTAQ------GY----SDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALL--  116 (404)
T ss_pred             CCCHHHHHHHHHHhhcCC------CC----CCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhC--
Confidence            367888888877654321      11    11234567888888887      6788899999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|++++|+|+.+...+...   |.+++.++++.  ++.+|++++++++.++++++++++|+||||.++|   ++
T Consensus       117 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~  191 (404)
T PRK09265        117 --NNGDEVLVPAPDYPLWTAAVSLS---GGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLE  191 (404)
T ss_pred             --CCCCEEEEeCCCCcChHHHHHHc---CCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHH
Confidence              78999999999999988877765   88888888763  4568999999999889999999999999999999   78


Q ss_pred             HHHHHHHhcCcEEEEecccccCc----cccccCcc---cccEEEeccccccCCCC--ceEEEEecCC--CCccccccccC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGK----IDINIQNY---KVDLMSFSAHKIYGPKG--IGALYIRRNP--RTRIEAQIHGG  225 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~----~~~~~~~~---~~d~~~~s~~K~~g~~g--~g~~~~~~~~--~~~~~~~~~~~  225 (397)
                      +|+++|+++|++||+|++|....    ....+..+   ...+++.|++|.+|.+|  +|+++.+...  ...+...+...
T Consensus       192 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~  271 (404)
T PRK09265        192 EIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDML  271 (404)
T ss_pred             HHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHH
Confidence            89999999999999999986221    11111111   13466789999765545  6888874211  11111100000


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC--
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLAR--IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--  301 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  301 (397)
                         .... ...+.....++.+++....  ..+.+..+++.++++++.+.|++ ++++.+..+.+   +..+++.++..  
T Consensus       272 ---~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~~~~~p~~---g~~l~~~~~~~~~  343 (404)
T PRK09265        272 ---ASMR-LCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNA-IPGVSCVKPKG---ALYAFPKLDPKVY  343 (404)
T ss_pred             ---hccc-cCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCCc---ceEEEEEeccccc
Confidence               0001 1233334444445553211  11112234567778889999987 77766554433   44566666531  


Q ss_pred             ---ChHH-HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         302 ---EGES-LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       302 ---~~~~-~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                         +..+ +...+.  ||.+.+|..|..                 ...+++|+++.  .+.+++++++++|.++++..+
T Consensus       344 ~~~~~~~~~~~~l~~~gv~v~pg~~F~~-----------------~~~~~~Ri~~~--~~~e~l~~~l~rl~~~l~~~~  403 (404)
T PRK09265        344 PIHDDEQFVLDLLLQEKVLLVQGTGFNW-----------------PEPDHFRIVTL--PRVDDLEEAIGRIGRFLSGYR  403 (404)
T ss_pred             CCCCHHHHHHHHHHhCCEEEECchhhCC-----------------CCCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhc
Confidence               2333 444444  899999876532                 01378999996  579999999999999887543

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.97  E-value=1.2e-27  Score=218.44  Aligned_cols=309  Identities=19%  Similarity=0.194  Sum_probs=238.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      ++|+.+++++.+.+.....+|+.           ...++++.++++++ .++++|++++|+++.+..+++++.    .+|
T Consensus        35 gp~~~~~~~~~~~~~~~~rYPd~-----------~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~----~~g   99 (356)
T COG0079          35 GPPPKVIEAIRAALDKLNRYPDP-----------DYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFV----EPG   99 (356)
T ss_pred             CCCHHHHHHHHHHHHhhccCCCC-----------cHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhh----cCC
Confidence            46789999998888754434433           46789999999999 788899999999999999999998    799


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc-
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK-  165 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~-  165 (397)
                      |.|+++.|+|..+...++..   |.+++.+|.++ +.+|++.+.+.+.+++++|++++|+||||...+.++|.+++... 
T Consensus       100 d~vl~~~Ptf~~Y~~~a~~~---g~~~~~v~~~~-~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~  175 (356)
T COG0079         100 DTVLIPEPTFSMYEIAAQLA---GAEVVKVPLKE-FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALP  175 (356)
T ss_pred             CEEEEcCCChHHHHHHHHhc---CCeEEEecccc-cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC
Confidence            99999999999999888887   99999999988 88999999999999999999999999999999988887777754 


Q ss_pred             -CcEEEEecccccCccc--cccC-cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchh
Q psy8850         166 -GVIFHCDAAQAVGKID--INIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH  239 (397)
Q Consensus       166 -gi~livD~a~~~~~~~--~~~~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (397)
                       +.+|++|++|.-...+  ..+. ..+.-+++-|++|.+|..|  +|+++.+++.++.+......|         ..+..
T Consensus       176 ~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~---------~v~~~  246 (356)
T COG0079         176 EGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPF---------NVSSP  246 (356)
T ss_pred             CCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCC---------CCCHH
Confidence             8899999999722211  1111 2234688889999887666  788888888777776654332         34445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEE-EeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEec
Q psy8850         240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVS  316 (397)
Q Consensus       240 ~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~  316 (397)
                      ...+..++++.- +.+++..+++.+.++++.+.|++ ++ +. +....    .+++.+.++......+.+.|.  ||.++
T Consensus       247 a~~aa~aal~~~-~~~~~~~~~~~~~r~rl~~~l~~-~~-~~~v~pS~----aNFvlv~~~~~~~~~l~~~L~~~giivR  319 (356)
T COG0079         247 ALAAAIAALRDA-DYLEESVERIREERERLYAALKA-LG-LFGVFPSQ----ANFVLVRVPDAEAAALAEALLKKGILVR  319 (356)
T ss_pred             HHHHHHHHcccH-HHHHHHHHHHHHHHHHHHHHHHh-CC-CCeecCCC----CcEEEEECCCccHHHHHHHHHHCCEEEE
Confidence            555554555543 57888999999999999999999 65 33 44332    566677776422446777775  88888


Q ss_pred             ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .-.. .                 ....+++||+++   ++++.++++++|.+++..
T Consensus       320 ~~~~-~-----------------~~~~~~lRitvg---t~een~~ll~AL~~~~~~  354 (356)
T COG0079         320 DCSS-V-----------------GLLPGYLRITVG---TPEENDRLLAALREVLKG  354 (356)
T ss_pred             eCCC-C-----------------CCCCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence            6422 1                 112379999998   688889999999988754

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.97  E-value=4.8e-28  Score=229.27  Aligned_cols=336  Identities=18%  Similarity=0.199  Sum_probs=232.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhH
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      .++.+++++.|++++.+.+...+  ++|.. .+..+....+.+.+ .++.+++++|++...++++ ||++|+..++.++.
T Consensus        25 ~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~-sgt~a~~~~l~~l~  102 (402)
T cd00378          25 IASENFTSPAVMEAMGSDLTNKYAEGYPGK-RYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPH-SGSQANLAVYFALL  102 (402)
T ss_pred             eccCCcCCHHHHHHhcccccccccCCCCCC-cccCCchHHHHHHHHHHHHHHHHhCCCceeeecC-CcHHHHHHHHHHhc
Confidence            46777889999999988775433  55555 33333333344444 6778899999986555554 67899999999987


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHH--HhhCCcEEEEeccCC---CCCCCHHHHHHHhc-CCceEEEEecccCcccccc
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLKPKN---NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~--~~~~g~~v~~v~~~~---~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~  153 (397)
                          ++||+|++++++|+++......  +...|.++..++.+.   ++.+|++++++++. ++++++++++++|  |...
T Consensus       103 ----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~--~~~~  176 (402)
T cd00378         103 ----EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAY--PRPI  176 (402)
T ss_pred             ----CCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCccc--CCCc
Confidence                7999999999999877654322  223377777776642   68899999999985 5899998887765  4677


Q ss_pred             cHHHHHHHHHhcCcEEEEecccccCcc-----ccccCcccccEEEecccc-ccCCCCceEEEEec-CCCCccccccccCC
Q psy8850         154 PILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR-NPRTRIEAQIHGGG  226 (397)
Q Consensus       154 ~l~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~-~~~~~~~~~~~~~~  226 (397)
                      |+++|+++|++||+++|+|++|+.+..     +..+.  ++|+++.|+|| +.|+.| |+++.++ +..+.+......  
T Consensus       177 ~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~~~l~~~~~~--  251 (402)
T cd00378         177 DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPRG-GLILTRKGELAKKINSAVFP--  251 (402)
T ss_pred             CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCCCCc-eEEEeccHHHHHHHHHHhCc--
Confidence            999999999999999999999865432     22233  57999999999 657765 7777765 554444332211  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CCh
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG  303 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  303 (397)
                          ...+++....+.++..++..... +++++.+++.++++++.+.|.+ + ++.+...+.  ..+++++.++.  .+.
T Consensus       252 ----~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~v~v~~~~~~~~~  323 (402)
T cd00378         252 ----GLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKE-R-GFKVVSGGT--DNHLVLVDLRPKGITG  323 (402)
T ss_pred             ----cccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-C-CCeEeecCC--CCeEEEEeCCccCCCH
Confidence                11234445566666666665544 6778889999999999999998 4 776653222  15666777752  344


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~~  372 (397)
                      ..+.+.|.  ||.+.++..  |...           ........+|+++...    .+.+||+++++.|++++.+
T Consensus       324 ~~~~~~l~~~gI~v~~~~~--p~~~-----------~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~  385 (402)
T cd00378         324 KAAEDALEEAGITVNKNTL--PWDP-----------SSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD  385 (402)
T ss_pred             HHHHHHHHHcCcEEcCCcC--CCCC-----------CCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence            55555555  888876432  2110           0012347899998753    3699999999999987743

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.97  E-value=5.9e-28  Score=231.45  Aligned_cols=296  Identities=14%  Similarity=0.183  Sum_probs=206.8

Q ss_pred             HHHHHHHHHHHHhC--------CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHH-HHhhCCcE
Q psy8850          42 AIEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFR  112 (397)
Q Consensus        42 ~~~~~~~~la~~~~--------~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~-~~~~~g~~  112 (397)
                      +..+++++++++++        +++++|++|+|+++|+.+++.+++    ++||.|+++.|+|+.+...+. ..   |.+
T Consensus        95 G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~----~pGD~Vlv~~P~Y~~~~~~~~~~~---G~~  167 (496)
T PLN02376         95 GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA----DPGDVFLIPSPYYAAFDRDLRWRT---GVE  167 (496)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC----CCCCEEEECCCCccchHHHHHhhC---CCE
Confidence            44556666666654        678899999999999999999998    899999999999999987665 24   999


Q ss_pred             EEEeccC--CCCCCCHHHHHHHh------cCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc-
Q psy8850         113 VTYLKPK--NNGLITLSQLEEKI------CSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI-  180 (397)
Q Consensus       113 v~~v~~~--~~~~~d~~~l~~~i------~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~-  180 (397)
                      ++.+|++  +++.+|++++++++      ..+++++++++|+||||.+++   +++|+++|++||++||+|++|+.... 
T Consensus       168 vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~  247 (496)
T PLN02376        168 IIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFA  247 (496)
T ss_pred             EEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccC
Confidence            9999996  34678999998653      247899999999999999999   56688899999999999999983211 


Q ss_pred             ---ccccCcc-----------cccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHH
Q psy8850         181 ---DINIQNY-----------KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM  244 (397)
Q Consensus       181 ---~~~~~~~-----------~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  244 (397)
                         ...+..+           +..+++.|++|.+|.+|  +|+++..++...........        .+..+.....++
T Consensus       248 ~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~--------~~~vs~~~Q~a~  319 (496)
T PLN02376        248 GGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSS--------FGLVSSQTQLML  319 (496)
T ss_pred             CCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhh--------cCCCCHHHHHHH
Confidence               1111100           12245789999666445  78888854332221111110        112333334444


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-C-------hHHHHHHhC--
Q psy8850         245 GEAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-E-------GESLLMAIK--  311 (397)
Q Consensus       245 ~~al~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~l~--  311 (397)
                      ...++   ++...+.+.++++.++++.+.+.|++  .++.+..+..   +.++++.++.. .       ..++.+.+.  
T Consensus       320 ~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~--~gi~~~~~~a---G~flwi~l~~~~~~~~~~~~e~~l~~~ll~~  394 (496)
T PLN02376        320 ASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKK--ADIACLTSNA---GLFAWMDLRHLLRDRNSFESEIELWHIIIDK  394 (496)
T ss_pred             HHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCcccCCCc---eEEEEEEchhhhccCCchhHHHHHHHHHHHc
Confidence            44443   22334666788888999999999988  3665554432   45667776531 1       134555442  


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                       +|.+.+|..|...                 .++++||+++. .++++++..+++|++++.+.++
T Consensus       395 ~gV~v~pGs~F~~~-----------------~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~~~~~  441 (496)
T PLN02376        395 VKLNVSPGSSFRCT-----------------EPGWFRICFAN-MDDDTLHVALGRIQDFVSKNKN  441 (496)
T ss_pred             CCEEEeCccccCCC-----------------CCCEEEEEeeC-CCHHHHHHHHHHHHHHHHHhhh
Confidence             8999999766430                 13799999986 4689999999999999976554

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=7.5e-28  Score=225.14  Aligned_cols=308  Identities=16%  Similarity=0.112  Sum_probs=212.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--------CCCCcEEEeCChhHHHHHHHHHhH
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--------~~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ++|+.+++++.+.+.....  .. .|.     .....++|++++++++        +++++|++|+|+++++..++.++.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~--~~-~Y~-----~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~  112 (374)
T PRK02610         41 DLPPDLKQKLAWLYQQGIE--SN-RYP-----DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATC  112 (374)
T ss_pred             CCCHHHHHHHHHHHhhccc--cc-CCC-----CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHc
Confidence            5688999999887654110  00 111     1246778889998887        778899999999999998877766


Q ss_pred             hhhccCCC-EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhc----CCceEEEEecccCcccccc
Q psy8850          80 HFYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        80 ~~~~~~g~-~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~  153 (397)
                          .+++ +|++..|+|+.+...++..   |.+++.++.++ ++.+|+++++++++    +++++|++++|+||||.++
T Consensus       113 ----~~g~~~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~  185 (374)
T PRK02610        113 ----LGGEGSILVAEPTFSMYGILAQTL---GIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPL  185 (374)
T ss_pred             ----CCCCCeEEEcCCChHHHHHHHHHc---CCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCC
Confidence                4665 8999999999998888777   99999999875 46799999999886    4799999999999999999


Q ss_pred             cHHHHHHHHH-hcCcEEEEecccccCcc--c-cccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCc
Q psy8850         154 PILEIGELCR-SKGVIFHCDAAQAVGKI--D-INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       154 ~l~~i~~l~~-~~gi~livD~a~~~~~~--~-~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                      +.+++.++++ .+|++||+|++|.-...  . ..+......+++.|++|.+|.+|  +|+++.+++..+.+......   
T Consensus       186 s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~~~---  262 (374)
T PRK02610        186 TAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRLP---  262 (374)
T ss_pred             CHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhcCC---
Confidence            9766655543 14899999999973211  1 11222233577899999666545  79998876655555433211   


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESL  306 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  306 (397)
                           . ..+.....+...+++......+.+.+. .+.++.+.+.|++ ++++.+. +..   +.++++.++. .+..++
T Consensus       263 -----~-~~~~~~q~a~~~~l~~~~~~~~~~~~~-~~~r~~l~~~L~~-~~~~~~~-p~~---g~f~~~~l~~~~~~~~~  330 (374)
T PRK02610        263 -----Y-NLPSFSQLAAQLALEHRQELLAAIPEI-LQERDRLYQALQE-LPQLRVW-PSA---ANFLYLRLSQDAALAAL  330 (374)
T ss_pred             -----C-CCCHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHHh-CCCcEeC-CCc---ceEEEEeCCCCCCHHHH
Confidence                 1 123333334445555433333433433 4447778888887 7776543 222   4466777764 356777


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+.+.  ||.+.++                        .+++||+++   +.+++++++++|++++..
T Consensus       331 ~~~l~~~gi~v~~~------------------------~~~lRls~~---~~~~~~~~l~~l~~~l~~  371 (374)
T PRK02610        331 HQALKAQGTLVRHT------------------------GGGLRITIG---TPEENQRTLERLQAALTQ  371 (374)
T ss_pred             HHHHHHCCEEEEeC------------------------CCeEEEeCC---CHHHHHHHHHHHHHHHhh
Confidence            77765  7777532                        278999997   367889999999887653

>PLN02822 serine palmitoyltransferase

Probab=99.97  E-value=1.6e-27  Score=227.80  Aligned_cols=324  Identities=14%  Similarity=0.108  Sum_probs=230.3

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      .++++++++.+++..+.....  .....+...+...++++.|+++++.+ +.|++++|++ ++..++.++.    +++|.
T Consensus       124 ~~~~i~ea~~~al~~~G~g~~--g~r~~yg~~~~~~~Lee~La~~~~~~-~~i~~s~G~~-a~~sai~a~~----~~gd~  195 (481)
T PLN02822        124 GNEKIKESCTSALEKYGVGSC--GPRGFYGTIDVHLDCETKIAKFLGTP-DSILYSYGLS-TIFSVIPAFC----KKGDI  195 (481)
T ss_pred             CCHHHHHHHHHHHHHhCCCCc--ccCccccCHHHHHHHHHHHHHHhCCC-CEEEECCHHH-HHHHHHHHhC----CCCCE
Confidence            589999999999987432111  11122345678999999999999976 5788888776 6788888777    89999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc---------CCc-eEEEEecccCcccccccHHHH
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC---------SDT-ILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~---------~~~-~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      |++....|.++..++...   +.+++.++.+     |.++++..+.         +++ ++|+++.+++++|.+.|+++|
T Consensus       196 Ii~d~~~H~s~~~~~~ls---~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i  267 (481)
T PLN02822        196 IVADEGVHWGIQNGLYLS---RSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEI  267 (481)
T ss_pred             EEEeCCccHHHHHHHHHc---CCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHH
Confidence            999999998887777666   7888988876     4444444332         234 799999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccc---------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccc
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEY  229 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~  229 (397)
                      +++|++||+++|+|++|++|...         +++....+|+++.|++|.+|..| |+++++++..+.+.....+    .
T Consensus       268 ~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G-G~i~g~~~ii~~~~~~~~~----~  342 (481)
T PLN02822        268 VRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG-GFCTGSARVVDHQRLSSSG----Y  342 (481)
T ss_pred             HHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC-eEEEcCHHHHHHHHhcCCc----e
Confidence            99999999999999999955432         12211257999999999777766 8999887665554432211    1


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC------C-
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI------E-  302 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-  302 (397)
                      .|..+.++..+ .+..++++.+.+ .++..++++++++++++.|++ .+++.+..+..   ..++.+.+++.      + 
T Consensus       343 ~fsa~lPp~~~-~Aa~~aL~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~~---spi~~l~l~~~~~~~~~~~  416 (481)
T PLN02822        343 VFSASLPPYLA-SAAITAIDVLED-NPSVLAKLKENIALLHKGLSD-IPGLSIGSNTL---SPIVFLHLEKSTGSAKEDL  416 (481)
T ss_pred             eeccccCHHHH-HHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHh-cCCcccCCCCC---CCEEEEEeCCCcccccchH
Confidence            22222233333 333367776543 367889999999999999998 66776654333   45666666532      1 


Q ss_pred             --hHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         303 --GESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       303 --~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                        ..++.+.|.   ||.+.++.....              .....+..+|++++..++++||++++++|++++..+
T Consensus       417 ~~~~~~~~~Ll~e~GV~v~~~~~~~~--------------~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~  478 (481)
T PLN02822        417 SLLEHIADRMLKEDSVLVVVSKRSTL--------------DKCRLPVGIRLFVSAGHTESDILKASESLKRVAASV  478 (481)
T ss_pred             HHHHHHHHHHHhcCCEEEEeeCCCCc--------------CCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence              245666653   788887632111              011112579999998899999999999999988765

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.97  E-value=8.2e-28  Score=224.43  Aligned_cols=320  Identities=17%  Similarity=0.184  Sum_probs=214.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhh----HHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWT----AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG   77 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~   77 (397)
                      |++..++..+++.+++.++....   |+++.+..+..    ..+.+.++++.++++++.+. .+++++ |+.|+..++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~-~l~~~s-G~~a~~~~~~~   90 (370)
T PRK05937         16 GFSRSDTLVHEVEKRYRLYCRQF---PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE-AFIVPS-GYMANLGLCAH   90 (370)
T ss_pred             CCCCCHHHHHHHHHHHHHhcccc---CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe-EEEECC-hHHHHHHHHHH
Confidence            44444444445555544443221   32212333333    66789999999999999963 355544 55666555554


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc------CCceEEEEecccCcccc
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC------SDTILVSVMLVNNEIGV  151 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~------~~~~~v~~~~~~~~tG~  151 (397)
                      +.    ++++.|+++..+|.+...++....  +..+ .++     .+|+++++++++      +++.+|++++++|++|.
T Consensus        91 ~~----~~~d~ii~d~~~H~sv~~~~~~~~--~~~~-~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~  158 (370)
T PRK05937         91 LS----SVTDYVLWDEQVHISVVYSLSVIS--GWHQ-SFR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGT  158 (370)
T ss_pred             hC----CCCCEEEEEhhhhHHHHHHHHHcC--CceE-Eec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCC
Confidence            43    678999999999999999887652  3333 233     358999999886      34668889999999999


Q ss_pred             cccHHHHHHHHHhcCcEEEEecccccCccccccC----cc---cccEEEeccccccCCCCceEEEEecCCCCcccccccc
Q psy8850         152 IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ----NY---KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHG  224 (397)
Q Consensus       152 ~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~----~~---~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~  224 (397)
                      +.|+++|.++|+++|+++++|++|+.|..+.+..    .+   +.++++.|++|.+|+.|.|+++.+ +....+..... 
T Consensus       159 i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~vl~~~-~~~~~~~~~~~-  236 (370)
T PRK05937        159 LAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAALLSSS-EVKQDLMLNSP-  236 (370)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceEEEcCH-HHHHHHHHhCC-
Confidence            9999999999999999999999999887665542    11   234667888898888887766543 22222111100 


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChH
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE  304 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (397)
                         ...+.. +.+...++++.++++.+.+......+++.++++++.+.|.. ..      .     .....+.++..+..
T Consensus       237 ---~~~~s~-~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~-~~------~-----~~~~~i~~~~~~~~  300 (370)
T PRK05937        237 ---PLRYST-GLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS-AA------P-----GCVQPIFLPGISEQ  300 (370)
T ss_pred             ---CCeecC-CCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-CC------C-----CCEEEEEeCChhHH
Confidence               112223 35556788888999988654355677888888888877754 11      0     11223455555556


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      .+...|.  ||.+..  .|.+                  ..+.||++++.++|++|||++++.|+++++++.+.
T Consensus       301 ~~~~~L~~~gi~v~~--~~~~------------------~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~~  354 (370)
T PRK05937        301 ELYSKLVETGIRVGV--VCFP------------------TGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQKN  354 (370)
T ss_pred             HHHHHHHHCCeeEEe--eCCC------------------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            6777765  776652  2322                  12689999999999999999999999998877653

>KOG2862|consensus

Probab=99.97  E-value=3.2e-27  Score=199.75  Aligned_cols=333  Identities=14%  Similarity=0.174  Sum_probs=259.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      +++.+|+.|++++.....          -.+.+...++..++.+-++..|..... ..++..+|+.|++.++..+.    
T Consensus        24 GPsnl~~~V~~A~~~~~l----------gh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l----   89 (385)
T KOG2862|consen   24 GPSNLSGRVQEAMSRPSL----------GHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL----   89 (385)
T ss_pred             CCcCCCHHHHHhhcCCcc----------ccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc----
Confidence            344456666666544332          223467788999999999999997533 48888899999999999998    


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCccccccc-HHHHHHH
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP-ILEIGEL  161 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~-l~~i~~l  161 (397)
                      .|||.|++....-.+.. +.....+.|++|..++.+......++++++++.+ ++++|++++..+.||++.| ++...++
T Consensus        90 ePgd~vLv~~~G~wg~r-a~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~l  168 (385)
T KOG2862|consen   90 EPGDNVLVVSTGTWGQR-AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGEL  168 (385)
T ss_pred             CCCCeEEEEEechHHHH-HHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHH
Confidence            89999998776555543 3455566799999999888888999999999976 6899999999999999999 6788999


Q ss_pred             HHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc-------cccC--------
Q psy8850         162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-------IHGG--------  225 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~-------~~~~--------  225 (397)
                      ||+|+++++||.+.+.|..++.++++++|+.....+| +.+|.|.+++..+++..+.++..       ++++        
T Consensus       169 c~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wg  248 (385)
T KOG2862|consen  169 CHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWG  248 (385)
T ss_pred             hhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhc
Confidence            9999999999999999999999999999999999999 78899999988887765554221       1111        


Q ss_pred             -CccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEe-CCCCCCCCceEEEEec-CC
Q psy8850         226 -GHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYIN-GDMNNRIPHNLNISFN-FI  301 (397)
Q Consensus       226 -~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~  301 (397)
                       +...+...-|++...++++.+||.++. +|+++..++++++.++++..|++  -|++.. ..+..+.+....+..+ +.
T Consensus       249 c~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~--~GLq~fv~~e~~rlptvttv~vp~gv  326 (385)
T KOG2862|consen  249 CDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEA--LGLQLFVVDEELRLPTVTTVKVPYGV  326 (385)
T ss_pred             cCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccceecChhhccCcceeeecCCCC
Confidence             112234455888999999999999884 58999999999999999999999  455543 4556677777777766 57


Q ss_pred             ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +..+++..+.   ++.+..|...                   -.+..+||.+..+ -+.+.|+..++.|+..+.+-
T Consensus       327 Dw~dVv~~~~~~~~vei~gglg~-------------------~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~  383 (385)
T KOG2862|consen  327 DWKDVVAYAMSHYVVEIGGGLGP-------------------TVGKVFRIGLLGCNANVEYIDNVVELLKLALQRK  383 (385)
T ss_pred             CHHHHHHHHHHhcCEEeccccCC-------------------CcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhc
Confidence            8888888776   4444433211                   2258899986543 56899999999998887654

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.97  E-value=3.9e-28  Score=228.82  Aligned_cols=317  Identities=12%  Similarity=0.067  Sum_probs=218.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C----CCCC-cEEEeCChhHHHHHHHHHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y----ADPR-EIIWTSGATESNNLAIKGA   78 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~----~~~~-~i~~~~g~t~a~~~~l~~l   78 (397)
                      ++|+.+++++.+.+.....      |..    .....++++++++++    +    ++++ +|++|+|+++|+.+++.++
T Consensus        41 ~~~~~~~~a~~~~~~~~~~------Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l  110 (393)
T TIGR03538        41 PTPAFVLEALRENLHGLST------YPT----TKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAV  110 (393)
T ss_pred             CCCHHHHHHHHHHhhccCC------CCC----CCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHH
Confidence            4678889998887643221      211    123455666666665    3    5564 7999999999999999988


Q ss_pred             HhhhccCCCE--EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850          79 AHFYKKRGKH--IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        79 ~~~~~~~g~~--vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                      .    ++||.  |+++.|.|+.+...+...   |.+++.+|++++  +.+|++++++++.++++++++++|+||||.+++
T Consensus       111 ~----~~gd~~~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s  183 (393)
T TIGR03538       111 I----NPGQAPLVVMPNPFYQIYEGAALLA---GAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLS  183 (393)
T ss_pred             c----CCCCcceEEecCCCCcchHHHHHhc---CCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccC
Confidence            8    78875  999999999988776666   999999998643  468999999998889999999999999999999


Q ss_pred             ---HHHHHHHHHhcCcEEEEecccccCcc-----ccc----cC-----cccccEEEeccccccCCCC--ceEEEEecCCC
Q psy8850         155 ---ILEIGELCRSKGVIFHCDAAQAVGKI-----DIN----IQ-----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPR  215 (397)
Q Consensus       155 ---l~~i~~l~~~~gi~livD~a~~~~~~-----~~~----~~-----~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~  215 (397)
                         +++|+++|++||++||+|++|.....     +..    ..     ..+..+++.|++|.++.+|  +|+++.+++..
T Consensus       184 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~  263 (393)
T TIGR03538       184 LDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEIL  263 (393)
T ss_pred             HHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHH
Confidence               57888899999999999999873211     111    00     1134588999999555445  78888876655


Q ss_pred             CccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEE
Q psy8850         216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN  295 (397)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  295 (397)
                      ..+.....       ......+.....+..+++.. .+.+++.++.++++++.+.+.|++ .  +.+..+.+   +..++
T Consensus       264 ~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~-~--~~~~~p~g---g~f~~  329 (393)
T TIGR03538       264 KAFLRYRT-------YHGCAMPIPTQLASIAAWND-EQHVRENRALYREKFAAVLEILGQ-V--LDLELPDA---GFYLW  329 (393)
T ss_pred             HHHHHHHH-------hhccCcCHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHh-h--CcccCCCe---eEEEE
Confidence            54433221       01112233333333334432 335777788889999999999987 3  22332222   55667


Q ss_pred             EEecCCChHHHHHHh--C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         296 ISFNFIEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       296 ~~~~~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +.++ .+..++.+.+  + ||.+.+|..|.....           ....+.+++||++..  +++++++++++|.++
T Consensus       330 ~~~~-~~~~~~~~~l~~~~gV~v~pg~~f~~~~~-----------~~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       330 PKVP-GDDEAFARALYEEENVTVLPGRFLAREAE-----------GVNPGEGRVRIALVA--PLEECVEAAERIRSF  392 (393)
T ss_pred             EECC-CCHHHHHHHHHHHCCEEEeCCcccccccc-----------CCCCCCCEEEEEecC--CHHHHHHHHHHHHHh
Confidence            7776 4566777665  2 999999986643100           001123789999985  689999999998764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.97  E-value=5.3e-27  Score=224.77  Aligned_cols=339  Identities=14%  Similarity=0.160  Sum_probs=225.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ..|+.+++++.+...- ......+.........+.+.++++++++++|.+...+.. ++|+.+....+..+.....++|+
T Consensus        81 ~~~p~i~~~~~~~~~~-~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~-~~GA~a~~~~l~~~r~~~~~~Gd  158 (481)
T PRK04366         81 KYNPKINEKVARLPGF-AELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQP-AAGAHGELTGLLMIRAYHEARGD  158 (481)
T ss_pred             CCCHHHHHHHHhCcch-hcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEe-CcHHHHHHHHHHHHHHHhhccCc
Confidence            5678888888765211 111111011233445678899999999999997333333 34433333222211111114444


Q ss_pred             ----EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccc-ccHHHHHHHH
Q psy8850          88 ----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI-QPILEIGELC  162 (397)
Q Consensus        88 ----~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~-~~l~~i~~l~  162 (397)
                          +|+++.++|+++...+...   |++++.+|.+.++.+|+++|++++++++++|++++++ ++|.+ .|+++|+++|
T Consensus       159 ~~~~~Vlv~~~~hp~~~~~~~~~---G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a  234 (481)
T PRK04366        159 TKRTEVIVPDSAHGTNPASAAMA---GFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAEIV  234 (481)
T ss_pred             CCCCEEEEcCCccHhHHHHHHHc---CCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHHHH
Confidence                9999999999999887665   9999999998888999999999999999999999877 89987 5899999999


Q ss_pred             HhcCcEEEEecccccCcc-ccccCcccccEEEecccc-ccCC-----CCceEEEEecCCCCcccccccc--CC-------
Q psy8850         163 RSKGVIFHCDAAQAVGKI-DINIQNYKVDLMSFSAHK-IYGP-----KGIGALYIRRNPRTRIEAQIHG--GG-------  226 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~-~~~~~~~~~d~~~~s~~K-~~g~-----~g~g~~~~~~~~~~~~~~~~~~--~~-------  226 (397)
                      |++|+++++|+++..+.. ..+...+++|++++|+|| +++|     +|+|+++++++....+.....+  +.       
T Consensus       235 ~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~  314 (481)
T PRK04366        235 HEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYD  314 (481)
T ss_pred             HHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeeccc
Confidence            999999999999985532 235567799999999999 5534     4568999987765555322211  00       


Q ss_pred             ---ccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec---
Q psy8850         227 ---HEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN---  299 (397)
Q Consensus       227 ---~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---  299 (397)
                         ...+++.++.+...+.+....+..+ .++++++.++..+++++++++|++ +..+  ... . .....+.+.++   
T Consensus       315 r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~-~~~~--~~~-~-~~~~~~~~~~~~~~  389 (481)
T PRK04366        315 RPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKD-IYDL--PYD-R-PCMHEFVLSGKKLK  389 (481)
T ss_pred             ccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hCcc--cCC-C-CeeEEEEEECcccc
Confidence               0113334443333333333333333 456888888899999999999998 4332  211 1 11123334332   


Q ss_pred             --CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         300 --FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       300 --~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                        +.+..++.+.|.  |+.+.  ....|                ....+.+|++++.++|++|||+++++|.++.++..+
T Consensus       390 ~~g~~~~~v~~~L~~~Gi~~~--~~~~p----------------~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~  451 (481)
T PRK04366        390 ETGVRTLDIAKRLLDYGFHPP--TIYFP----------------LIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKE  451 (481)
T ss_pred             ccCCCHHHHHHHHHHCCccCC--ccccc----------------cccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence              346678888886  55433  11111                001368999999999999999999999999888765

>PRK07777 aminotransferase; Validated

Probab=99.96  E-value=1.5e-27  Score=224.53  Aligned_cols=321  Identities=15%  Similarity=0.123  Sum_probs=219.6

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CC-cEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PR-EIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~-~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      |+.+.+++.+.+...    .. .|.......+..+.+.+.+.+.+|.+  ++ +|++|+|+++|+.+++.++.    ++|
T Consensus        39 ~~~~~~~~~~~~~~~----~~-~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~----~~g  109 (387)
T PRK07777         39 PPEMLEAAQEAIAGG----VN-QYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV----EPG  109 (387)
T ss_pred             CHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc----CCC
Confidence            556777777666431    11 22222222233333444444446653  44 69999999999999998887    789


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC---CCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN---GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~---~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      |+|++..+.|+.+...+...   |.+++.++.+++   +.+|++++++++.+++++|++++++||||.+++   +++|++
T Consensus       110 d~vli~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~  186 (387)
T PRK07777        110 DEVLLIEPYYDSYAAVIAMA---GAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAE  186 (387)
T ss_pred             CEEEEeCCCchhhHHHHHHC---CCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHH
Confidence            99999999999988776666   889999988653   468999999999889999999999999999987   678899


Q ss_pred             HHHhcCcEEEEecccccCcc------ccc-cCc-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccc
Q psy8850         161 LCRSKGVIFHCDAAQAVGKI------DIN-IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~------~~~-~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +|++||+++|+|++|+....      ++. +.. .+.++++.|++|.+|.+|  +|+++++++..+.+......      
T Consensus       187 ~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~~------  260 (387)
T PRK07777        187 LAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQY------  260 (387)
T ss_pred             HHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhh------
Confidence            99999999999999863211      111 111 246799999999766445  68888876655444332210      


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec---CCChHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN---FIEGESLL  307 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  307 (397)
                      ... ..+.....++..++......+++..+.++++++.+.+.|++ + ++.+..+.+   +..+++.++   ..++.++.
T Consensus       261 ~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~  334 (387)
T PRK07777        261 LTY-VGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAE-A-GFEVHDSAG---TYFLCADPRPLGYDDGTEFC  334 (387)
T ss_pred             ccc-CCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-C-CCCccCCCc---ceEEEecccccCCCCHHHHH
Confidence            001 11222233333444433345677888999999999999988 4 555554432   334455543   23567888


Q ss_pred             HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      +.|.   +|.+.+|..|...              .....+++||+++.  +++++++.+++|.+++
T Consensus       335 ~~l~~~~gv~v~pg~~f~~~--------------~~~~~~~~Ri~~~~--~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        335 RALPERVGVAAIPMSVFYDP--------------ADAWNHLVRFAFCK--RDDTLDEAIRRLRALR  384 (387)
T ss_pred             HHHHHhCCEEEeCchHhCCC--------------CcCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence            8883   8999999755420              11123789999985  7999999999998765

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.96  E-value=2.4e-28  Score=233.45  Aligned_cols=314  Identities=18%  Similarity=0.199  Sum_probs=216.6

Q ss_pred             HHHHHHHHHHHHhC--------CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcE
Q psy8850          42 AIEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFR  112 (397)
Q Consensus        42 ~~~~~~~~la~~~~--------~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~  112 (397)
                      ...+++++++++++        +++++|++|+|+++++.+++.+++    ++||.|++++|.|+.+...+.. .   |.+
T Consensus        87 G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~----~pGd~Vlv~~P~Y~~~~~~~~~~~---g~~  159 (468)
T PLN02450         87 GLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA----EPGDAFLLPTPYYPGFDRDLKWRT---GVE  159 (468)
T ss_pred             ChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC----CCCCEEEECCCCCCchHHHHhhcC---CcE
Confidence            45567777777764        577889999999999999999988    8999999999999999876663 4   899


Q ss_pred             EEEeccC--CCCCCCHHHHHHHhcC------CceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccC---
Q psy8850         113 VTYLKPK--NNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVG---  178 (397)
Q Consensus       113 v~~v~~~--~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~---  178 (397)
                      ++.+|++  ++..+|++++++++.+      +++++++++|+||||.+++   +++|+++|++||++||+|++|+..   
T Consensus       160 ~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~  239 (468)
T PLN02450        160 IVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFD  239 (468)
T ss_pred             EEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccC
Confidence            9999985  3456788999988754      7899999999999999999   467888899999999999999831   


Q ss_pred             ccc----cccC---------cccccEEEeccccccCCCC--ceEEEEecCC-CCccccccccCCccccccCCCCchhHHH
Q psy8850         179 KID----INIQ---------NYKVDLMSFSAHKIYGPKG--IGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIV  242 (397)
Q Consensus       179 ~~~----~~~~---------~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (397)
                      ..+    ....         ..+..+++.|++|.+|.+|  +|+++.+++. ...+.... .        .+..+.....
T Consensus       240 ~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~-~--------~~~~s~~~Q~  310 (468)
T PLN02450        240 SPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS-S--------FGLVSSQTQY  310 (468)
T ss_pred             CCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHh-h--------cCCCCHHHHH
Confidence            111    1110         1234688999999655444  7998887442 22221111 0        1122334444


Q ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CC------hHHHHHHh-C
Q psy8850         243 GMGEAFRLA---RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IE------GESLLMAI-K  311 (397)
Q Consensus       243 ~l~~al~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~l-~  311 (397)
                      ++..+++..   ...+.+.++++.+.++.+.+.|++ + ++.+..+..   +.++++.++. .+      ..++...+ .
T Consensus       311 a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~-~-gi~~~~~~~---g~flwi~l~~~~~~~~~~~~~~l~~~ll~  385 (468)
T PLN02450        311 LLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEA-A-GIKCLKSNA---GLFCWVDMRHLLKSNTFEAEMELWKKIVY  385 (468)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCCc---eEEEEEEchHhcCcCCchHHHHHHHHHHH
Confidence            444555421   224677788999999999999998 4 665544332   3456666642 11      12344444 2


Q ss_pred             --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH----hcCccchhhhc
Q psy8850         312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR----ELSPLWDMHKE  385 (397)
Q Consensus       312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~----~~~~~~~~~~~  385 (397)
                        ||.+.||..|...                 ..+++||+++. .+++++++.+++|++++.+..    -++..++++ -
T Consensus       386 ~~gV~v~PG~~f~~~-----------------~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~~~~~~~~~~~~~~-~  446 (468)
T PLN02450        386 EVKLNISPGSSCHCT-----------------EPGWFRVCFAN-MSEETLDLAMKRLKSFVESDSGRRINKSSHQRLK-N  446 (468)
T ss_pred             hCCEEEeCccccCCC-----------------CCCEEEEEecC-CCHHHHHHHHHHHHHHHHhccccccccchhcccc-c
Confidence              8999999766431                 13799999996 468999999999999987665    233333222 2


Q ss_pred             cccccccccc
Q psy8850         386 GIDLNTIKWA  395 (397)
Q Consensus       386 ~~~~~~~~~~  395 (397)
                      -..+--+||.
T Consensus       447 ~~~~~~~~~~  456 (468)
T PLN02450        447 LRRKTVSKWV  456 (468)
T ss_pred             ccchhhhccc
Confidence            2344456775

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.96  E-value=3e-27  Score=226.41  Aligned_cols=304  Identities=17%  Similarity=0.189  Sum_probs=221.6

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEEEe
Q psy8850          38 TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVTYL  116 (397)
Q Consensus        38 ~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~~v  116 (397)
                      ...+...+.++++++++|++.+++.+++|+|++++.++.++..   .+|++|++++++|+++...+..++. .|.+++.+
T Consensus       109 g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~---~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v  185 (447)
T PRK00451        109 GTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRI---TKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEV  185 (447)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh---cCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEe
Confidence            3456677788899999999988999999999999988887642   5789999999999999999887544 38999999


Q ss_pred             ccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE--ecccccCccccccCcccccEEEe
Q psy8850         117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC--DAAQAVGKIDINIQNYKVDLMSF  194 (397)
Q Consensus       117 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv--D~a~~~~~~~~~~~~~~~d~~~~  194 (397)
                      |.+++ .+|++++++++++++++|+++++ |+||.+.|+++|.++||++|+++++  |.. +.+... ....+++|++++
T Consensus       186 ~~~~~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~-~~~~~~~D~~~~  261 (447)
T PRK00451        186 PYEDG-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLK-PPGEYGADIVVG  261 (447)
T ss_pred             cCCCC-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCC-CcccCCCCEEEE
Confidence            99877 89999999999999999999998 8999999999999999999999998  544 344433 234568999999


Q ss_pred             ccccc-----cCCCCceEEEEecCCCCccccccccCCc-----------------cccccCCCCchh---HHH--HHHHH
Q psy8850         195 SAHKI-----YGPKGIGALYIRRNPRTRIEAQIHGGGH-----------------EYGLRSGTLATH---QIV--GMGEA  247 (397)
Q Consensus       195 s~~K~-----~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~--~l~~a  247 (397)
                      |.+|+     +|++|+|+++++++....+.+.+.++..                 ..++..++.+..   .+.  +...+
T Consensus       262 s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~  341 (447)
T PRK00451        262 EGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIY  341 (447)
T ss_pred             CCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHH
Confidence            88774     4444799999988776665443333211                 012222333322   122  22224


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEec-ccCccCC
Q psy8850         248 FRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVS-SGSACTS  323 (397)
Q Consensus       248 l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~-~g~~~~~  323 (397)
                      ++.+ .++++++.+++.++++++.+.|++ ++++.+..  +. ....+.+.++ .+..++.+.|.  ++... ++..+.+
T Consensus       342 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~--~~-~~~~~~v~~~-~~~~~~~~~L~~~gi~~~~~~~~~~~  416 (447)
T PRK00451        342 MSLLGPEGLRELAEQNHQKAHYLAERLAE-IGGVELFD--GP-FFNEFVVRLP-KPAEEVNEALLEKGILGGYDLGRYYP  416 (447)
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHhh-cCCEEecC--CC-eEEEEEEecC-CCHHHHHHHHHhcCCCCCcccccccC
Confidence            4544 457899999999999999999998 88887762  11 1122334443 35678888876  44321 1111111


Q ss_pred             CCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         324 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       324 ~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                                      . ..+++|++++.++++++|++++++|++++
T Consensus       417 ----------------~-~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        417 ----------------E-LGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             ----------------C-cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                            0 12689999998899999999999998764

>PRK03321 putative aminotransferase; Provisional

Probab=99.96  E-value=8.4e-28  Score=223.45  Aligned_cols=303  Identities=13%  Similarity=0.107  Sum_probs=217.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .+++.+++++.+.+.....+|           .....++++.+++++++++++|++++|+++++..++.++.    ++||
T Consensus        35 ~~~~~~~~a~~~~~~~~~~y~-----------~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~----~~gd   99 (352)
T PRK03321         35 GPLPSVRAAIARAAAGVNRYP-----------DMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA----GPGD   99 (352)
T ss_pred             CCCHHHHHHHHHHHHhcCcCC-----------CCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc----CCCC
Confidence            367799999988775432222           1246889999999999988899999999999999888776    7999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh--c
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--K  165 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~--~  165 (397)
                      +|+++.+.|..+....+..   |.+++.+|.++++.+|+++++++++++++++++++++||||.++|.+++.++|+.  +
T Consensus       100 ~Vli~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~  176 (352)
T PRK03321        100 EVIFAWRSFEAYPILVQVA---GATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPA  176 (352)
T ss_pred             EEEeCCCCHHHHHHHHHHc---CCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC
Confidence            9999999888776665555   9999999998667789999999998899999999999999999999999999987  5


Q ss_pred             CcEEEEecccccCcc----c--cc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         166 GVIFHCDAAQAVGKI----D--IN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       166 gi~livD~a~~~~~~----~--~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      |+++|+|++|.....    +  +. ....+..+++.|++|.+|.+|  +|+++++++..+.+.....         ..+.
T Consensus       177 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~---------~~~~  247 (352)
T PRK03321        177 DVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVAV---------PFSV  247 (352)
T ss_pred             CeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhcC---------CCCC
Confidence            999999999872211    1  11 111134577889999766445  7999988766555543321         1233


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcE
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIA  314 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~  314 (397)
                      +.....+..++++... .+.+..+++.+.++.+.+.|++ . ++.+.. +.   +.++++.++ .+..++.+.|.  ||.
T Consensus       248 s~~~q~~a~~~l~~~~-~~~~~~~~~~~~r~~~~~~L~~-~-~~~~~~-~~---g~~i~i~l~-~~~~~~~~~l~~~gI~  319 (352)
T PRK03321        248 NSLAQAAAIASLAAED-ELLERVDAVVAERDRVRAALRA-A-GWTVPP-SQ---ANFVWLPLG-ERTADFAAAAAEAGVV  319 (352)
T ss_pred             CHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHH-C-CCccCC-CC---CCEEEEeCC-CCHHHHHHHHHHCCEE
Confidence            3344443334554222 2333444555566778888887 3 544322 12   345566654 34567777775  887


Q ss_pred             ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +.+   |.                    .+.|||+++   +.+++++++++|++++.
T Consensus       320 v~~---~~--------------------~~~iRi~~~---~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        320 VRP---FA--------------------GEGVRVTIG---APEENDAFLRAARAWRA  350 (352)
T ss_pred             EEc---cC--------------------CCcEEEeeC---CHHHHHHHHHHHHHHhc
Confidence            764   11                    156999986   69999999999998753

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=2.2e-27  Score=220.94  Aligned_cols=303  Identities=12%  Similarity=0.070  Sum_probs=212.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      ..+|+.+.+++.+.......+|.           ....++++.+++++++++++|++|+|+++++.++++++.    ++|
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~Y~~-----------~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~----~~g  106 (357)
T PRK14809         42 HGPSPAAVEAIREAAERVHSYPK-----------ASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAML----DPG  106 (357)
T ss_pred             CCCCHHHHHHHHHHHhhhhcCCC-----------CCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc----CCC
Confidence            35678888998887654222221           135689999999999999999999999999999999887    799


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      |+|++++|+|+.+.......   |.+++.++++.  +..++++++++.. ++++++++++++||||.++|.+++.++++.
T Consensus       107 d~V~v~~P~y~~~~~~~~~~---g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~  182 (357)
T PRK14809        107 DTVLVPDPGFAYYGMSARYH---HGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALAER  182 (357)
T ss_pred             CEEEEeCCChHHHHHHHHHc---CCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHHh
Confidence            99999999998777655555   88888888853  3466778877765 468899999999999999998777777665


Q ss_pred             c--CcEEEEecccccCccc---cc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         165 K--GVIFHCDAAQAVGKID---IN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       165 ~--gi~livD~a~~~~~~~---~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      .  +++||+|++|......   .. ....+..+++.|++|.+|.+|  +|+++++++..+.+.....         ....
T Consensus       183 ~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~---------~~~~  253 (357)
T PRK14809        183 TDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNT---------PFAA  253 (357)
T ss_pred             CccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhCC---------CCCC
Confidence            3  7899999999732211   11 111134578899999766445  7999988766555543321         1122


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcE
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIA  314 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~  314 (397)
                      +.....+...+++. .+.+++..+.++++++++.+.|.. . .   . ++.   +.++++.++  +..++.+.+.  ||.
T Consensus       254 ~~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-~---~-~~~---g~f~~~~~~--~~~~~~~~l~~~gv~  321 (357)
T PRK14809        254 SELACRAGLAALDD-DEHVERTVETARWAREYIREELDA-P-T---W-ESA---GNFVLAEVG--DASAVAEAAQERGVI  321 (357)
T ss_pred             CHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHhcC-c-c---C-CCC---CCEEEEECC--CHHHHHHHHHHCCEE
Confidence            33322322244432 334667777888888888888865 2 1   1 112   445556554  4567777665  899


Q ss_pred             ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +.+|..|..                   .++|||+++   +.+++++++++|+++++
T Consensus       322 v~~g~~f~~-------------------~~~iRls~~---~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        322 VRDCTSFGL-------------------PECIRITCG---TREETERAVEVLNEVLA  356 (357)
T ss_pred             EEECccCCC-------------------CCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence            999865532                   278999986   47899999999988764

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.96  E-value=1e-27  Score=224.08  Aligned_cols=304  Identities=13%  Similarity=0.104  Sum_probs=209.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEEE
Q psy8850          36 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVT  114 (397)
Q Consensus        36 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v~  114 (397)
                      ++...+...++++.+++++|.+  ++++++||++|+..++.++.    ++||+|+++++.|+++...+.. +...|++++
T Consensus        56 ~r~~~p~~~~le~~la~l~g~~--~~v~~ssG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~  129 (390)
T PRK08133         56 SRFTNPTVTMFQERLAALEGAE--ACVATASGMAAILAVVMALL----QAGDHVVSSRSLFGSTVSLFEKIFARFGIETT  129 (390)
T ss_pred             ECCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEccCcchhHHHHHHHHHHHcCcEEE
Confidence            3444567888999999999976  58889999999999998887    7999999999999988776653 344599999


Q ss_pred             EeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEe
Q psy8850         115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF  194 (397)
Q Consensus       115 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~  194 (397)
                      .++.+     |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++++.+..... ...++|+++.
T Consensus       130 ~vd~~-----d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~p-l~~g~Divv~  203 (390)
T PRK08133        130 FVDLT-----DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQP-LKLGADVVIH  203 (390)
T ss_pred             EECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCc-hhhCCcEEEe
Confidence            99875     78999999999999999999999999999999999999999999999999875543222 2347899999


Q ss_pred             ccccccCCCC--c-eEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         195 SAHKIYGPKG--I-GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN  271 (397)
Q Consensus       195 s~~K~~g~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~  271 (397)
                      |++|++++.|  . |+++.+++....+......       .....+....+   .++..+ +.+..+.++..+++..+.+
T Consensus       204 S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~-------~g~~~~~~~a~---~~l~gl-~tl~~R~~~~~~~a~~la~  272 (390)
T PRK08133        204 SATKYLDGQGRVLGGAVVGSKELMEEVFGFLRT-------AGPTLSPFNAW---VFLKGL-ETLSLRMEAHSANALALAE  272 (390)
T ss_pred             ecceeecCCcceEeEEEEcCHHHHHHHHHHHHH-------hCCCCCHHHHH---HHHccc-chHHHHHHHHHHHHHHHHH
Confidence            9999665544  3 6666665443333222111       01112212211   122211 1355566777788889999


Q ss_pred             HHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccC----CCCCCh-
Q psy8850         272 GLMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACT----SASLEP-  328 (397)
Q Consensus       272 ~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~~~~-  328 (397)
                      .|++ .+++..+..+.              ...++++.|.+++.  ....+.+.|+  .+...-|..-+    |..+.+ 
T Consensus       273 ~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~~  351 (390)
T PRK08133        273 WLEA-HPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLISITANLGDTKTTITHPATTTHG  351 (390)
T ss_pred             HHHh-CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCCcceEeccCCCcceeeecCCCCCcc
Confidence            9988 77765443322              23467888888631  1345555665  33444443222    211111 


Q ss_pred             ---hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         329 ---SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       329 ---~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                         ....+..|+.+    +.||+|++.    |+.|.+++.|+++++
T Consensus       352 ~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~  389 (390)
T PRK08133        352 RLSPEARAAAGITE----GLIRVAVGL----EDVADIKADLARGLA  389 (390)
T ss_pred             cCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHHhh
Confidence               12234566654    899999997    567777777777654

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.96  E-value=3.8e-27  Score=219.46  Aligned_cols=307  Identities=15%  Similarity=0.059  Sum_probs=217.1

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      .++|+.+.+++.+.+....      .|..    . ...++++.+++++++++++|++|+|+++++.+++.++.     +|
T Consensus        34 ~~~~~~~~~a~~~~~~~~~------~Y~~----~-~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-----~g   97 (360)
T PRK07392         34 LGPPESVIAAIQSALSALR------HYPD----P-DYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-----QL   97 (360)
T ss_pred             CCCCHHHHHHHHHHHHHhh------cCCC----c-CHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-----CC
Confidence            4578899999887775422      1211    1 23588999999999999999999999999999988754     56


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCC-----CCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL-----ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL  161 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~-----~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l  161 (397)
                      +.|++..|+|+.+...+...   |.+++.+|.+.++.     .+++++++.. ++++++++++||||||.+++.++|.++
T Consensus        98 ~~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~~l~~l  173 (360)
T PRK07392         98 RAVYLITPAFGDYRRALRAF---GATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSREAILPL  173 (360)
T ss_pred             CeEEEECCCcHHHHHHHHHc---CCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHHHHHHH
Confidence            89999999999999888877   99999999975442     3566666543 468899999999999999999999999


Q ss_pred             HHhcCcEEEEecccccCcc-----c-cc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccccc
Q psy8850         162 CRSKGVIFHCDAAQAVGKI-----D-IN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLR  232 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~-----~-~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (397)
                      ++++++ +|+|++|.-...     + .. +...+..+++.|++|.+|.+|  +|+++++++..+.+.....         
T Consensus       174 ~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~~---------  243 (360)
T PRK07392        174 LEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWRD---------  243 (360)
T ss_pred             HHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhCC---------
Confidence            999986 666999873211     1 11 111234688899999666444  7999887665544432211         


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHh-C
Q psy8850         233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-K  311 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~  311 (397)
                      ....+.....++.++++. .+..++..+.++++++++.+.|++ ++++.+.. ..   ..++++.++. +..++...+ .
T Consensus       244 ~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~-~~---~~fl~~~~~~-~~~~l~~~ll~  316 (360)
T PRK07392        244 PWPVNGLAAAAAIAALAD-RDFQQQTWAWLPPAREALFQGLAS-LPGLTPLP-SA---ANFLLVQSQG-SALQLQEKLLQ  316 (360)
T ss_pred             CCCCCHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECC-CC---CCEEEEEcCC-CHHHHHHHHHh
Confidence            123344444555455542 223455566788889999999987 77876543 22   4455666653 566777664 3


Q ss_pred             --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                        ||.+.+|..|..                 ...++|||+++.   .++.+++.++|.+++
T Consensus       317 ~~gv~v~pg~~f~~-----------------~~~~~iRi~~~~---~~~~~~l~~al~~~~  357 (360)
T PRK07392        317 QHRILIRDCLSFPE-----------------LGDRYFRVAVRT---EAENQRLLEALAAIL  357 (360)
T ss_pred             hCCEEEEeCCCCCC-----------------CCCCEEEEEeCC---HHHHHHHHHHHHHHh
Confidence              899999976532                 123799999984   666777777777654

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.96  E-value=2.6e-27  Score=223.30  Aligned_cols=317  Identities=19%  Similarity=0.190  Sum_probs=221.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .++|.+++++.+++..+. .... .+...+...+...++++.++++++.+  +.+++++|++++..++..+.    ++||
T Consensus        53 ~~~~~v~~a~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~~~g~~~~~~~l~~~~----~~gd  124 (385)
T PRK05958         53 ARHPRLIAAAQQAARRYG-AGSG-GSRLVTGNSPAHEALEEELAEWFGAE--RALLFSSGYAANLAVLTALA----GKGD  124 (385)
T ss_pred             CCCHHHHHHHHHHHHhcC-CCCC-CcCcccCCcHHHHHHHHHHHHHhCCC--cEEEECcHHHHHHHHHHHhC----CCCC
Confidence            367899999999987632 1111 11211222456788999999999953  45555667777777777665    8999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      +|++++++|+++...+...   |.+++.++..     |++++++++++   ++.+++++++.|++|.+.++++|.++|++
T Consensus       125 ~V~~~~~~~~~~~~~~~~~---g~~~~~~~~~-----d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~  196 (385)
T PRK05958        125 LIVSDKLNHASLIDGARLS---RARVRRYPHN-----DVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARR  196 (385)
T ss_pred             EEEEeCccCHHHHHHHHhc---CCceEEeCCC-----CHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHH
Confidence            9999999999998877665   8888888753     88999998865   36777888899999999999999999999


Q ss_pred             cCcEEEEecccccCccc------c---ccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCC
Q psy8850         165 KGVIFHCDAAQAVGKID------I---NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT  235 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~------~---~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (397)
                      ||+++|+|++|+.+...      .   .+.....++++.|++|.+|+.| |+++.+++....+......    . ...+.
T Consensus       197 ~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-g~~~~~~~~~~~~~~~~~~----~-~~~~~  270 (385)
T PRK05958        197 HGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG-AAVLGSETLIDYLINRARP----F-IFTTA  270 (385)
T ss_pred             hCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC-cEEEcCHHHHHHHHHhCcc----c-eecCC
Confidence            99999999999755322      1   1222234588999999777766 8887775543333211100    0 11123


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC--C
Q psy8850         236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK--D  312 (397)
Q Consensus       236 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~  312 (397)
                      .+..++++..++++.+.+. .++.+++.++++++.+.|++ + ++.+..+ .   +.++.+.+++ .+..++.+.|.  |
T Consensus       271 ~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~g  343 (385)
T PRK05958        271 LPPAQAAAARAALRILRRE-PERRERLAALIARLRAGLRA-L-GFQLMDS-Q---SAIQPLIVGDNERALALAAALQEQG  343 (385)
T ss_pred             CCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCCcCCC-C---CCEEEEEeCCHHHHHHHHHHHHHCC
Confidence            4445666666788876544 56788999999999999988 4 4544332 1   4456666653 23456777776  8


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      |.+.++..+..                ..+++++||+++.+++++++++++++|+++
T Consensus       344 I~v~~~~~~~~----------------~~~~~~lRis~~~~~~~~~i~~~l~~l~~~  384 (385)
T PRK05958        344 FWVGAIRPPTV----------------PAGTSRLRITLTAAHTEADIDRLLEALAEA  384 (385)
T ss_pred             ceEecccCCCC----------------CCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence            88876422110                012378999999889999999999999875

>PRK08175 aminotransferase; Validated

Probab=99.96  E-value=1.9e-27  Score=224.18  Aligned_cols=317  Identities=15%  Similarity=0.135  Sum_probs=218.5

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChhHHHHHHHHHhHhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~-~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +++.+.+++.+.+...   ... .|    .......++++++++++    |  ++++ ++++|+|+++++.+++..+.  
T Consensus        43 ~~~~~~~~~~~~~~~~---~~~-~Y----~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~--  112 (395)
T PRK08175         43 TPPHIVEKLCEVAQRP---DTH-GY----STSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL--  112 (395)
T ss_pred             CCHHHHHHHHHHHhCC---CcC-CC----CCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC--
Confidence            3556777766655321   001 12    22233455666666654    4  3555 79999999999999988887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCcccccccH---
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQPI---  155 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~l---  155 (397)
                        ++||+|++++|+|+.+...+...   |.+++.++.+.++. +.++++++++   .+++++++++|+||||.+++.   
T Consensus       113 --~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~-~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~  186 (395)
T PRK08175        113 --DHGDTVLVPNPSYPIHIYGAVIA---GAQVRSVPLVEGVD-FFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFF  186 (395)
T ss_pred             --CCCCEEEEcCCCCcchHHHHHHc---CCeEEEEecccCCC-cHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHH
Confidence              79999999999999988877766   99999999876542 5888988876   378999999999999999996   


Q ss_pred             HHHHHHHHhcCcEEEEecccccCc----cccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      ++|+++|++||+++|+|++|+...    .+..+..    .+..+++.|++|.+|.+|  +|+++.+++....+...... 
T Consensus       187 ~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~-  265 (395)
T PRK08175        187 EKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSY-  265 (395)
T ss_pred             HHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHhh-
Confidence            688999999999999999986321    1111111    134567899999666545  79998877655554432210 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC----
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI----  301 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  301 (397)
                           ...+.. .....+...+++....++++.++.++++++++.+.|++ . ++.+..+.+   +.++++.++..    
T Consensus       266 -----~~~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~p~~---g~~i~i~l~~~~~~~  334 (395)
T PRK08175        266 -----HDYGTF-TPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHE-A-GWMVEMPKA---SMYVWAKIPEPYAAM  334 (395)
T ss_pred             -----cccCCC-cHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCCE---EEEEEEECCcccCCC
Confidence                 011222 22333333455433445777888999999999999998 5 555443322   45667777642    


Q ss_pred             ChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       302 ~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ++.++...+ .  ||.+.+|..|..                 ...+++||++.  .+.+.+++++++|.+++.+
T Consensus       335 ~~~~~~~~l~~~~gv~v~p~~~f~~-----------------~~~~~lRis~~--~~~~~~~~al~~l~~~l~~  389 (395)
T PRK08175        335 GSLEFAKKLLNEAKVCVSPGIGFGD-----------------YGDTHVRFALI--ENRDRIRQAIRGIKAMFRA  389 (395)
T ss_pred             CHHHHHHHHHHhCCEEEeCchhhCc-----------------CCCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence            356776654 2  999999865532                 11368999997  4789999999999888864

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=3.2e-27  Score=220.78  Aligned_cols=306  Identities=14%  Similarity=0.103  Sum_probs=215.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .+++.+.+++.+.......++.          ... .++++++++++++++++|++|+|+++++..++.++.    ++||
T Consensus        49 ~~~~~~~~al~~~~~~~~~Y~~----------~~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd  113 (371)
T PRK05166         49 GPSPAVRRAFADIAELLRLYPD----------PQG-RALREAIAARTGVPADRIILGNGSEDLIAVICRAVL----RPGD  113 (371)
T ss_pred             CCCHHHHHHHHHHHHHhhcCCC----------CcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc----CCCC
Confidence            4677888888765433221111          122 378999999999988899999999999999999887    7999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh--c
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--K  165 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~--~  165 (397)
                      +|++..|+|+.+...++..   |.+++.++.++++.+|+++++++++++++++++++++||||.++|.+++.++++.  +
T Consensus       114 ~vli~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~  190 (371)
T PRK05166        114 RVVTLYPSFPLHEDYPTMM---GARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPP  190 (371)
T ss_pred             EEEEcCCChHHHHHHHHHc---CCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC
Confidence            9999999999887666665   9999999998777899999999998899999999999999999998776666653  4


Q ss_pred             CcEEEEecccccCcc----c--ccc-Cc-ccccEEEeccccccCCCC--ceEEEEe-cCCCCccccccccCCccccccCC
Q psy8850         166 GVIFHCDAAQAVGKI----D--INI-QN-YKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       166 gi~livD~a~~~~~~----~--~~~-~~-~~~d~~~~s~~K~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
                      +++||+|++|.....    +  ... .. ....+++.|++|.+|.+|  +|++++. ++..+.+......        . 
T Consensus       191 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~--------~-  261 (371)
T PRK05166        191 ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTP--------F-  261 (371)
T ss_pred             CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccC--------C-
Confidence            899999999872221    1  111 11 123578999999766445  6887764 3333333222111        1 


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--C
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--D  312 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~  312 (397)
                      ..+.....++.+++.. .+.+++..+.+.++++++.+.|++ . ++.+. ++.   +.++++.++ .+..++.+.|.  |
T Consensus       262 ~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~-p~~---g~fl~~~~~-~~~~~l~~~l~~~g  333 (371)
T PRK05166        262 NVNGAAQAAALAALDD-EEHLAKGVALALAERERLKKELAE-M-GYRIA-PSR---ANFLFFDAR-RPASAVAEALLRQG  333 (371)
T ss_pred             CCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-cCeeC-CCc---CCEEEEeCC-CCHHHHHHHHHHCC
Confidence            1233333333344432 235677778888899999999998 4 55543 222   345566654 35667777775  8


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      |.+.+|..+.                   ..++|||+++   +.++.+++++.|+.++
T Consensus       334 i~v~p~~~~~-------------------~~~~iRi~~~---~~~~~~~l~~~l~~i~  369 (371)
T PRK05166        334 VIVKPWKQPG-------------------FETFIRVSIG---SPEENDHFVAALDKVL  369 (371)
T ss_pred             eEEecCCCCC-------------------CCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence            9898874211                   1389999998   5788999999888764

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.96  E-value=2.9e-27  Score=220.89  Aligned_cols=315  Identities=18%  Similarity=0.150  Sum_probs=221.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      +.++.+++++.+++..+. .... .+...+...+...++++.++++++.+ +.+++++| ++++..++.++.    ++||
T Consensus        30 ~~~~~v~~a~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~-~~i~~~~G-~~~~~~~l~~~~----~~gd  101 (360)
T TIGR00858        30 ASHPEVIQAAQQGAEQYG-AGST-ASRLVSGNSPLHEELEEELAEWKGTE-AALLFSSG-YLANVGVISALV----GKGD  101 (360)
T ss_pred             CCCHHHHHHHHHHHHhcC-CCCC-CcCcccCCcHHHHHHHHHHHHHhCCC-CEEEECch-HHHHHHHHHHhC----CCCC
Confidence            356899999999886532 2111 12111222356788999999999864 45666665 566666677665    7899


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCR  163 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~~  163 (397)
                      +|++.+++|+++...+...   |.++..++.     +|++++++++++    +++++++++++|++|...|+++|.++|+
T Consensus       102 ~v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~  173 (360)
T TIGR00858       102 LILSDALNHASLIDGCRLS---GARVRRYRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAE  173 (360)
T ss_pred             EEEEEccccHHHHHHHHhc---CCceEEecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHH
Confidence            9999999999998877765   888887764     488999998864    4789999999999999999999999999


Q ss_pred             hcCcEEEEecccccCccccc---------cCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCC
Q psy8850         164 SKGVIFHCDAAQAVGKIDIN---------IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       164 ~~gi~livD~a~~~~~~~~~---------~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
                      ++|+++|+|++|+.+....+         +...+.|+++.|++|.+|+.| |+++.+++....+......    ..+ .+
T Consensus       174 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g-G~~~~~~~~~~~~~~~~~~----~~~-~~  247 (360)
T TIGR00858       174 RYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG-AYVAGSQALIDYLINRART----LIF-ST  247 (360)
T ss_pred             HcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC-cEEEcCHHHHHHHHHhCcc----cee-cC
Confidence            99999999999986543211         112257899999999777776 8888876554444322111    001 12


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC--
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK--  311 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--  311 (397)
                      ..+...+++..++++.... .++..+++.++++++.+.|++ + ++.+..+ .   ..++++.++. .+..++.+.|.  
T Consensus       248 ~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~  320 (360)
T TIGR00858       248 ALPPAVAAAALAALELIQE-EPWRREKLLALIARLRAGLEA-L-GFTLMPS-C---TPIVPVIIGDNASALALAEELQQQ  320 (360)
T ss_pred             CCCHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHH-c-CCccCCC-C---CCEEEEEeCCHHHHHHHHHHHHHC
Confidence            2344555666677776543 356789999999999999998 5 4554422 2   3466666653 23556776665  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                      ||.+.++..+..                ...++++|++++.+++++++++++++|+
T Consensus       321 gI~v~~~~~~~~----------------~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       321 GIFVGAIRPPTV----------------PAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             CeeEeeeCCCCC----------------CCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            888876533221                0123689999999999999999999874

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PLN02721 threonine aldolase

Probab=99.96  E-value=1.6e-27  Score=221.93  Aligned_cols=312  Identities=15%  Similarity=0.176  Sum_probs=208.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc-CC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK-RG   86 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~-~g   86 (397)
                      .+++.+++++.+..   . + .. .+.+    .+...++++.++++++.+  .++++++|++++..++.++.    + +|
T Consensus        17 ~~~~~~~~a~~~~~---~-~-~~-~~~~----~~~~~~l~~~la~~~~~~--~~~~~~~Gs~a~~~~l~~~~----~~~g   80 (353)
T PLN02721         17 KPTDAMRAAMANAE---V-D-DD-VLGY----DPTALRLEEEMAKIFGKE--AALFVPSGTMGNLISVLVHC----DVRG   80 (353)
T ss_pred             CCCHHHHHHHHhcc---C-C-Cc-ccCC----CHHHHHHHHHHHHHhCCc--eeEEecCccHHHHHHHHHHc----cCCC
Confidence            56788888876531   1 1 11 1111    223688999999999986  46777888888777777665    5 89


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc-------CCceEEEEecc-cCccccccc---H
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-------SDTILVSVMLV-NNEIGVIQP---I  155 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-------~~~~~v~~~~~-~~~tG~~~~---l  155 (397)
                      |+|++++++|.+...........|.+++.+|.++++.+|+++++++++       +++++|+++++ +||+|..+|   +
T Consensus        81 d~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l  160 (353)
T PLN02721         81 SEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYT  160 (353)
T ss_pred             CeEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHH
Confidence            999999999876665211222338999999988888899999999998       58899999775 577898887   6


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc-----ccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCcccc
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      ++|.++|+++|+++|+|+++.++..     ..+....++|+++.|+||+++++..++++.+++....+.......     
T Consensus       161 ~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~~~-----  235 (353)
T PLN02721        161 DKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKRLRKTL-----  235 (353)
T ss_pred             HHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHHhHHHHHHhc-----
Confidence            7999999999999999999875431     111112267889999999554432244556655544433222110     


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEE-eCCCCCCCCceEEEEecC---CChHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI-NGDMNNRIPHNLNISFNF---IEGESL  306 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~  306 (397)
                        .+.+......+. +++..+.+.... .++..++++++.+.|++ ++++.+ ...+.   .+++++.++.   .+...+
T Consensus       236 --~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  307 (353)
T PLN02721        236 --GGGMRQVGVLAA-AALVALQENVPK-LEDDHKKAKLLAEGLNQ-IKGLRVNVAAVE---TNIVYFDITDGSRITAEKL  307 (353)
T ss_pred             --CCCeehhHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-CCCcEEecCCcc---ceEEEEEccCCccccHHHH
Confidence              111111111211 122222222222 33345678899999988 777754 33322   4566777764   356677


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      .+.|.  ++.+.++.                       ..++|++++..++++|+++++++|++++.
T Consensus       308 ~~~L~~~gi~v~~~~-----------------------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~  351 (353)
T PLN02721        308 CKSLEEHGVLLMPGN-----------------------SSRIRVVTHHQISDSDVQYTLSCFQQAAL  351 (353)
T ss_pred             HHHHHhCCcEEecCC-----------------------CceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence            77776  78887651                       26899999988999999999999998765

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.96  E-value=7.3e-28  Score=228.37  Aligned_cols=302  Identities=16%  Similarity=0.185  Sum_probs=212.0

Q ss_pred             HHHHHHHHHHHHHhC--------CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcE
Q psy8850          41 KAIEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR  112 (397)
Q Consensus        41 ~~~~~~~~~la~~~~--------~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~  112 (397)
                      .+...+|++++++++        +++++|++|+|+++|+.+++.+++    ++||.|+++.|.|+.+...+..  +.|.+
T Consensus        95 ~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~----~pGD~Vlv~~P~Y~~f~~~~~~--~~g~~  168 (447)
T PLN02607         95 HGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDLRW--RTGVK  168 (447)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHh--cCCcE
Confidence            345667777777664        567789999999999999999888    8999999999999999876552  23889


Q ss_pred             EEEeccCC--CCCCCHHHHHHHhcC------CceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc-
Q psy8850         113 VTYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI-  180 (397)
Q Consensus       113 v~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~-  180 (397)
                      ++.|+++.  ++.+|++++++++++      +++++++++|+||||.++|   +++|+++|++||+.+|+|++|+.... 
T Consensus       169 vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~  248 (447)
T PLN02607        169 IVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFS  248 (447)
T ss_pred             EEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccC
Confidence            99998873  346899999998864      7899999999999999999   57788999999999999999974221 


Q ss_pred             --c-cccC---------c-ccccEEEeccccccCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHH
Q psy8850         181 --D-INIQ---------N-YKVDLMSFSAHKIYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGM  244 (397)
Q Consensus       181 --~-~~~~---------~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  244 (397)
                        + .++.         . ....+++.|++|.+|.+|  +|+++..++ ....+.... .        .+..+......+
T Consensus       249 ~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~-~--------~~~~s~~~q~~~  319 (447)
T PLN02607        249 ASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS-S--------FTLVSSQTQHLL  319 (447)
T ss_pred             CCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHh-h--------cCCCCHHHHHHH
Confidence              1 1110         1 123477899999666445  688887422 222221111 0        111222233333


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC------C-hHHHHHHh-C--
Q psy8850         245 GEAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI------E-GESLLMAI-K--  311 (397)
Q Consensus       245 ~~al~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~l-~--  311 (397)
                      ...++   +....+...++++.+.++.+.+.|++  .++.+..+..   +.++++.++..      + ..++.+.+ .  
T Consensus       320 ~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~--~gi~~~~~~a---g~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~  394 (447)
T PLN02607        320 ASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRR--AGIECLKGNA---GLFCWMNLSPLLETPTREGELALWDSILREV  394 (447)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcccCCe---eEEEEEEchHhhcCCCchhHHHHHHHHHHhC
Confidence            34443   22334667788888899999999988  3655544322   45667776531      1 23455444 2  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccc
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLW  380 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~  380 (397)
                      ||.+.+|..|..                 ...+++||+++. .+++++++.+++|.+++++.+.++.|+
T Consensus       395 gV~v~pG~~f~~-----------------~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~~~~~~~~~  445 (447)
T PLN02607        395 KLNISPGSSCHC-----------------SEPGWFRVCFAN-MSEDTLEVALKRIHRFMDRRKTASSQQ  445 (447)
T ss_pred             CEEEcCccccCC-----------------CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            899999976543                 013899999996 468999999999999999888766554

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.96  E-value=5.6e-27  Score=217.46  Aligned_cols=305  Identities=16%  Similarity=0.161  Sum_probs=219.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .+|+.+.+++.+.+.....+|.           ....++|+++++++++++++|++|+|+++++..++.++     .+ +
T Consensus        32 ~~p~~~~~a~~~~~~~~~~Y~~-----------~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~-----~~-~   94 (354)
T PRK06358         32 GVPESLKQAITENLDKLVEYPD-----------PDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT-----KP-K   94 (354)
T ss_pred             CCCHHHHHHHHHHHHhhhcCCC-----------ccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-----CC-C
Confidence            3578899998887654221111           13578999999999999999999999999999998875     24 5


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELC  162 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~  162 (397)
                      .|++..|.|+.+...+...   |.+++.++.+.+  +.+| +++.+.+.++++++++++|+||||.+++   +++|+++|
T Consensus        95 ~v~i~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a  170 (354)
T PRK06358         95 KVLILAPTFAEYERALKAF---DAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKC  170 (354)
T ss_pred             cEEEecCChHHHHHHHHHc---CCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHH
Confidence            7999999999998777666   999999998743  4678 6666677778999999999999999998   57788889


Q ss_pred             HhcCcEEEEecccccCcc---ccc----cCcccccEEEeccccccCCCC--ceEEEEec-CCCCccccccccCCcccccc
Q psy8850         163 RSKGVIFHCDAAQAVGKI---DIN----IQNYKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLR  232 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~---~~~----~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~  232 (397)
                      ++||+++|+|++|.-...   +..    ....+..+++.|++|.+|.+|  +|++++++ .....+.....         
T Consensus       171 ~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~---------  241 (354)
T PRK06358        171 EKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMRE---------  241 (354)
T ss_pred             HhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC---------
Confidence            999999999999862211   111    112235588899999766445  78888753 33333333221         


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-
Q psy8850         233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-  311 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  311 (397)
                      ....+.....+...+++. ...+++..+.++++++++.+.|++ ++++.+..+.    ++++++.++.  ..++.+.|. 
T Consensus       242 ~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~----g~f~~~~~~~--~~~~~~~l~~  313 (354)
T PRK06358        242 PWSINTFADLAGQTLLDD-KEYIKKTIQWIKEEKDFLYNGLSE-FKGIKVYKPS----VNFIFFKLEK--PIDLRKELLK  313 (354)
T ss_pred             CCcchHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEcCCc----ceEEEEEcCc--hHHHHHHHHH
Confidence            123344444444455532 124567788889999999999988 7776666442    3456666653  356766665 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                       ||.+.+|..|..                 ...++|||+++   +.+++++++++|.+++
T Consensus       314 ~gI~v~~~~~f~~-----------------~~~~~iRls~~---~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        314 KGILIRSCSNYRG-----------------LDENYYRVAVK---SREDNKKLLKALEVIL  353 (354)
T ss_pred             CCeEEEECCCCCC-----------------CCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence             999999876532                 11378999997   6899999999998765

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.96  E-value=6.3e-28  Score=225.54  Aligned_cols=286  Identities=20%  Similarity=0.200  Sum_probs=215.9

Q ss_pred             HHHHHHHHHHHHHHhC------CCCC-cEEEeCChhHHHHHHHHHh-HhhhccCCCEEEEcCCCChhhHHHHHHHhhCCc
Q psy8850          40 EKAIEKARNEVAQLIY------ADPR-EIIWTSGATESNNLAIKGA-AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGF  111 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~------~~~~-~i~~~~g~t~a~~~~l~~l-~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~  111 (397)
                      .....+++++++++++      .+++ +|++++|+++++..++..+ .    ++++.|+++.|.|+.+...++..   |.
T Consensus        43 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~----~~~~~vlv~~P~y~~~~~~~~~~---g~  115 (363)
T PF00155_consen   43 PQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI----NPGDTVLVPDPCYPSYIEAARLL---GA  115 (363)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS----STTSEEEEEESSSTHHHHHHHHT---TS
T ss_pred             chhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccc----cccccceecCCcccccccccccc---Cc
Confidence            4467889999999998      6777 8999999999888888877 4    68999999999999999988887   99


Q ss_pred             EEEEeccC--CCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHH---HHHHHHhcCcEEEEecccccCcc
Q psy8850         112 RVTYLKPK--NNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILE---IGELCRSKGVIFHCDAAQAVGKI  180 (397)
Q Consensus       112 ~v~~v~~~--~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~---i~~l~~~~gi~livD~a~~~~~~  180 (397)
                      ++..+|++  .++.+|+++|++.+++      +++++++++++||||..++.++   |+++|++||++||+|++|+....
T Consensus       116 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~  195 (363)
T PF00155_consen  116 EVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIF  195 (363)
T ss_dssp             EEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBS
T ss_pred             eeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceecccc
Confidence            99999865  5678999999999987      6789999999999999999655   55559999999999999984332


Q ss_pred             c--------cccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHH
Q psy8850         181 D--------INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL  250 (397)
Q Consensus       181 ~--------~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~  250 (397)
                      .        ..+......+++.|++|.+|.+|  +|+++++++....+......+         ..+......+...+..
T Consensus       196 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~l~~  266 (363)
T PF00155_consen  196 GDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQRSG---------LSSSPMQAAAAAALSD  266 (363)
T ss_dssp             SSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHHHT---------TSSHHHHHHHHHHHHH
T ss_pred             CCCccCcccccccccccceeeeeccccccccccccccccchhhhhhhhhhccccc---------cccchhhHHHHHhhhc
Confidence            2        11122123588999999777555  799999876655554433221         1133333333334433


Q ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC---CcEecccCccCCC
Q psy8850         251 AR---IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSA  324 (397)
Q Consensus       251 ~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~  324 (397)
                      ..   +.+++++++++++++++.+.|.+ . ++.+..++.   +.++++.++..+..++.+.|.   ||.+.+|..+.. 
T Consensus       267 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~-  340 (363)
T PF00155_consen  267 PELVEKWLEELRERLRENRDLLREALEE-I-GITVLPPEA---GFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGV-  340 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TSEEEHHSB---SSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTS-
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHH-h-hhheeeccC---ccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCC-
Confidence            32   26788999999999999999999 4 888886654   556566665444567777775   899999865543 


Q ss_pred             CCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         325 SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                                        .++||+++ ...+++++++++++|
T Consensus       341 ------------------~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  341 ------------------PGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             ------------------TTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             ------------------CCEEEEEe-ccCCHHHHHHHHhhC
Confidence                              38999999 457999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=4.9e-27  Score=219.51  Aligned_cols=308  Identities=14%  Similarity=0.100  Sum_probs=217.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      .++|+.+++++.+.+....... . .|.     ......+++.+++++      ++++++|++|+|+++++.+++.++. 
T Consensus        38 ~~~~~~~~~al~~~l~~~~~~~-~-~Y~-----~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~-  109 (368)
T PRK03317         38 YPPSPALVADIAEAVAEAAAGL-N-RYP-----DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFG-  109 (368)
T ss_pred             CCCCHHHHHHHHHHHhhhhhhh-c-cCC-----CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhc-
Confidence            3678899999998875411110 0 121     113466778888877      4677899999999999999999988 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                         ++||.|++..|+|+.+.......   |.++..++.++++.+|++++++++.+ +++++++++|+||||.+++.+++.
T Consensus       110 ---~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~  183 (368)
T PRK03317        110 ---GPGRTALGFVPSYSMHPIIARGT---HTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVE  183 (368)
T ss_pred             ---CCCCEEEEeCCChHHHHHHHHhc---CCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence               79999999999999988777655   88888888776778999999999874 788999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCcc---c--ccc-CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccc
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKI---D--INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGL  231 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~---~--~~~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
                      ++++..++++|+|++|+....   +  ... ...+..+++.|++|.+|.+|  +|+++++++....+......       
T Consensus       184 ~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~~-------  256 (368)
T PRK03317        184 AILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRLP-------  256 (368)
T ss_pred             HHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCCC-------
Confidence            999999999999999983211   1  111 11123467789999665434  79999887665554432211       


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEE-EecCCChHHHHHHh
Q psy8850         232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI-SFNFIEGESLLMAI  310 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  310 (397)
                        ...+.....+..++++... .+.+..+++.++++.+.+.|++ . ++.+..+.    .+++.+ .+  .+...+.+.+
T Consensus       257 --~~~s~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~~~~~--~~~~~~~~~l  325 (368)
T PRK03317        257 --YHLSAVTQAAARAALRHAD-ELLASVAALRAERDRVVAWLRE-L-GLRVAPSD----ANFVLFGRF--ADRHAVWQGL  325 (368)
T ss_pred             --CCCCHHHHHHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHH-C-CCEeCCCC----CcEEEEecc--CCHHHHHHHH
Confidence              1233344444445665432 3344556678888889999988 4 66554432    222222 22  2456666666


Q ss_pred             C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         311 K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       311 ~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      .  ||.+.+..  .                    .+++||+++   +.+++++++++|++++.
T Consensus       326 ~~~Gv~v~~~~--~--------------------~~~iRi~~~---~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        326 LDRGVLIRDVG--I--------------------PGWLRVTIG---TPEENDAFLAALAEVLA  363 (368)
T ss_pred             HHCCEEEEeCC--C--------------------CCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence            5  88876421  0                    278999986   68899999999998864

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=6.4e-28  Score=223.53  Aligned_cols=281  Identities=17%  Similarity=0.166  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC-CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC
Q psy8850          43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN  121 (397)
Q Consensus        43 ~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~  121 (397)
                      ..++++++++++|+++++|++|+|+++++.+++.++.    ++| ++|+++.|+|+.+...++..   |.+++.+|.+++
T Consensus        59 ~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~----~~g~~~vli~~P~y~~y~~~~~~~---G~~~~~v~~~~~  131 (351)
T PRK01688         59 PKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVEIRTVPTLDN  131 (351)
T ss_pred             hHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCCEEEEcCCCHHHHHHHHHHc---CCEEEEeecCCC
Confidence            4688999999999999999999999999999999887    676 89999999999887776666   999999999877


Q ss_pred             CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh--cCcEEEEecccccCcccc---c-cCcccccEEEec
Q psy8850         122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKIDI---N-IQNYKVDLMSFS  195 (397)
Q Consensus       122 ~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~--~gi~livD~a~~~~~~~~---~-~~~~~~d~~~~s  195 (397)
                      +.+|++++++++ +++++|++++|+||||.+.+.+++.++++.  .+++||+|++|.-.....   + ....+..+++.|
T Consensus       132 ~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rS  210 (351)
T PRK01688        132 WQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRT  210 (351)
T ss_pred             CCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEec
Confidence            889999999988 689999999999999999997776666543  268999999986322111   1 122245688999


Q ss_pred             cccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy8850         196 AHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNG  272 (397)
Q Consensus       196 ~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~  272 (397)
                      ++|.+|..|  +|+++++++..+.+......+         ..+.....+..++++.. .+.+.+..+.+.+.++++.+.
T Consensus       211 fSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~---------~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~  281 (351)
T PRK01688        211 LSKAFALAGLRCGFTLANEEVINLLLKVIAPY---------PLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAA  281 (351)
T ss_pred             chHhhcCHHHHHhHHhCCHHHHHHHHhccCCC---------CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999777666  699998877665554432211         12222222222444421 234666777888889999999


Q ss_pred             HhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850         273 LMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI  350 (397)
Q Consensus       273 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  350 (397)
                      |++ ++++....+..   ..++++.++  +..++.+.|.  ||.++.+..+.             |     ..+++||++
T Consensus       282 L~~-~~~~~~~~ps~---~nfi~~~~~--~~~~l~~~L~~~gi~vr~~~~~~-------------~-----~~~~iRis~  337 (351)
T PRK01688        282 LKE-IPCVEQVFDSE---TNYILARFT--ASSAVFKSLWDQGIILRDQNKQP-------------G-----LSNCLRITI  337 (351)
T ss_pred             HHh-CCCCCeECCCC---CcEEEEEcC--CHHHHHHHHHHCCeEEEECCCcC-------------C-----CCCeEEEeC
Confidence            988 77764333322   445666664  4567777765  88887653221             1     137899999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy8850         351 GRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       351 ~~~~~~~~i~~~~~~l~  367 (397)
                      +   +.+++++++++|+
T Consensus       338 ~---~~~e~~~l~~al~  351 (351)
T PRK01688        338 G---TREECQRVIDALR  351 (351)
T ss_pred             C---CHHHHHHHHHhhC
Confidence            8   6899999999873

>PLN02231 alanine transaminase

Probab=99.96  E-value=1.1e-26  Score=223.93  Aligned_cols=327  Identities=17%  Similarity=0.136  Sum_probs=219.9

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      .|..+++...+.+....+..     ...|....+..++|+.+++++    |  +++++|++|+|+++|+.+++.++..  
T Consensus       141 fp~~~i~~a~~~l~~~~~~~-----~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~--  213 (534)
T PLN02231        141 FSADAIERAWQILDQIPGRA-----TGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR--  213 (534)
T ss_pred             CCHHHHHHHHHHHHhcCCcc-----ccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc--
Confidence            35566666666665422111     112333445677777777765    4  4677999999999999999998862  


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcC------CceEEEEecccCccccccc
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~  154 (397)
                       .+||.|+++.|.|+.+...+...   |.+++.++.++  ++.+|+++|++++++      +++++++.+|+||||.+++
T Consensus       214 -~~gd~Vli~~P~Y~~y~~~~~~~---g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls  289 (534)
T PLN02231        214 -SEKDGILCPIPQYPLYSASIALH---GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLA  289 (534)
T ss_pred             -CCCCEEEEeCCCChhHHHHHHHc---CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCC
Confidence             36899999999999999888877   89999999874  357999999999865      6899999999999999998


Q ss_pred             ---HHHHHHHHHhcCcEEEEecccccCc-----cccccCcc---------c-ccEEEecccc-ccCCCC--ceEEEEe--
Q psy8850         155 ---ILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNY---------K-VDLMSFSAHK-IYGPKG--IGALYIR--  211 (397)
Q Consensus       155 ---l~~i~~l~~~~gi~livD~a~~~~~-----~~~~~~~~---------~-~d~~~~s~~K-~~g~~g--~g~~~~~--  211 (397)
                         +++|+++|++||++||+|++|.--.     ....+..+         + ..+++.|++| ++|..|  +|++.+.  
T Consensus       290 ~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~  369 (534)
T PLN02231        290 EENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF  369 (534)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecC
Confidence               5678999999999999999987311     11111110         1 2366779999 666444  6888763  


Q ss_pred             -cCCCCccccccccCCccccccCCCCchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcE
Q psy8850         212 -RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR----------LARIEMKEELKRILFLQKRLYNGLMESIEEI  280 (397)
Q Consensus       212 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  280 (397)
                       ++..+.+.....       ... .++..+..+...+++          .+.++.+++.+.++++++.+.+.|++ ++++
T Consensus       370 ~~~l~~~l~k~~~-------~~~-~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~-~~gi  440 (534)
T PLN02231        370 TSDVREQIYKVAS-------VNL-CSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNS-LEGV  440 (534)
T ss_pred             CHHHHHHHHHHHh-------hhc-CCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence             333333322210       111 233343443334442          11223445678899999999999998 7888


Q ss_pred             EEeCCCCCCCCceEE--EEecCC-----------ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCc
Q psy8850         281 YINGDMNNRIPHNLN--ISFNFI-----------EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHS  344 (397)
Q Consensus       281 ~~~~~~~~~~~~~~~--~~~~~~-----------~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (397)
                      .+..+.+   +..++  +.++..           +...+...|.   ||++.||..|...                .+..
T Consensus       441 ~~~~p~G---gfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~----------------~g~~  501 (534)
T PLN02231        441 TCNKAEG---AMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQV----------------PGTW  501 (534)
T ss_pred             eecCCCe---eeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCC----------------CCCC
Confidence            7765543   23333  222211           1222333332   9999999876530                1135


Q ss_pred             eEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         345 SIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       345 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ++|+++.  .++++++..+++|.+++++.-++
T Consensus       502 ~~Rit~~--~~~e~l~eal~RL~~~~~~~~~~  531 (534)
T PLN02231        502 HFRCTIL--PQEDKIPAIVSRLTEFHKSFMDE  531 (534)
T ss_pred             eEEEEeC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            6999985  58999999999999988776543

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.96  E-value=3.7e-27  Score=219.27  Aligned_cols=289  Identities=20%  Similarity=0.208  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHHHhCCC------CCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEE
Q psy8850          42 AIEKARNEVAQLIYAD------PREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY  115 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~------~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~  115 (397)
                      ...++++.++++++..      ++++++++|+++++..++.++.    ++|++|+++.++|+++...++..   |.+++.
T Consensus        37 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~---~~~~~~  109 (350)
T cd00609          37 GLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL----NPGDEVLVPDPTYPGYEAAARLA---GAEVVP  109 (350)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHC---CCEEEE
Confidence            4555666666666543      5679999999999999999887    78999999999999999888776   899999


Q ss_pred             eccCCCCCCCH--HHHHHHhcCCceEEEEecccCcccccccHHHH---HHHHHhcCcEEEEecccccCccc-------cc
Q psy8850         116 LKPKNNGLITL--SQLEEKICSDTILVSVMLVNNEIGVIQPILEI---GELCRSKGVIFHCDAAQAVGKID-------IN  183 (397)
Q Consensus       116 v~~~~~~~~d~--~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i---~~l~~~~gi~livD~a~~~~~~~-------~~  183 (397)
                      ++.++++..+.  +.++..+.+++++|++++++||+|.+.|++++   .++|+++|+++|+|++++.+...       ..
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~  189 (350)
T cd00609         110 VPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALAL  189 (350)
T ss_pred             EecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccC
Confidence            99987776665  67777778899999999999999999996654   58999999999999999854321       12


Q ss_pred             cCcccccEEEeccccccC--CCCceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy8850         184 IQNYKVDLMSFSAHKIYG--PKGIGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK  260 (397)
Q Consensus       184 ~~~~~~d~~~~s~~K~~g--~~g~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~  260 (397)
                      ....+.|+++.|++|.++  +.++|++++++ +....+.....       +..++++.....++..+++...+++++..+
T Consensus       190 ~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  262 (350)
T cd00609         190 LDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLP-------YTTSGPSTLSQAAAAAALDDGEEHLEELRE  262 (350)
T ss_pred             cCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHH-------hcccCCChHHHHHHHHHHhCcHHHHHHHHH
Confidence            334467899999999443  44589999887 44444433221       223456667777777777765567888899


Q ss_pred             HHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCC
Q psy8850         261 RILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGC  337 (397)
Q Consensus       261 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~  337 (397)
                      ++.++++++.+.|++ .+...+..+   ..+.++++.++.. +...+.+.+.  ++.+.++..+..              
T Consensus       263 ~~~~~~~~l~~~L~~-~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~--------------  324 (350)
T cd00609         263 RYRRRRDALLEALKE-LGPLVVVKP---SGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGE--------------  324 (350)
T ss_pred             HHHHHHHHHHHHHHh-cCCccccCC---CccEEEEEecCCCChHHHHHHHHHhCCEEEeccccccc--------------
Confidence            999999999999998 554432111   2245556666543 3444555554  788887654431              


Q ss_pred             CccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         338 NDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       338 ~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                         ..+.++|+++...  .+|+++++++|+
T Consensus       325 ---~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         325 ---GGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             ---CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence               1248999999985  999999999986

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02483 serine palmitoyltransferase

Probab=99.96  E-value=1.5e-26  Score=221.74  Aligned_cols=325  Identities=16%  Similarity=0.160  Sum_probs=220.2

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +++.+.+++.+++.++.....  .....+...+...++++.+++++|.+ +.+++++ |..++..++.++.    ++||+
T Consensus       116 ~~~~~~~~~~~ai~~~g~~~~--~sr~~~g~~~~~~ele~~lA~~~g~~-~ai~~~~-G~~an~~~i~al~----~~Gd~  187 (489)
T PLN02483        116 ADEYCTPRVIESLKKYSASTC--SSRVDGGTTKLHRELEELVARFVGKP-AAIVFGM-GYATNSTIIPALI----GKGGL  187 (489)
T ss_pred             CCHHHHHHHHHHHHHhCCCCC--ccccccCCcHHHHHHHHHHHHHhCCC-cEEEECC-HHHHHHHHHHHhC----CCCCE
Confidence            344555555555555321111  22222344668899999999999965 4566655 5566777777777    89999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc-------CCc-----e-EEEEecccCcccccccH
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-------SDT-----I-LVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-------~~~-----~-~v~~~~~~~~tG~~~~l  155 (397)
                      |++++++|+++...+...   |++++.++.+     |.+++++++.       +++     + +|+++...|++|.+.++
T Consensus       188 Vi~d~~~h~s~~~~~~~~---Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l  259 (489)
T PLN02483        188 IISDSLNHNSIVNGARGS---GATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKL  259 (489)
T ss_pred             EEEcchhhHHHHHHHHHc---CCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCH
Confidence            999999999998877665   9999999865     5666666553       222     4 66777788999999999


Q ss_pred             HHHHHHHHhcCcEEEEecccccCccc---------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      ++|+++|++||+++|+|++|+.+...         .+....+.|+++.|++|.+|+.| |+++++++.++.+.....+. 
T Consensus       260 ~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G-G~i~~~~~li~~l~~~~~~~-  337 (489)
T PLN02483        260 PEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG-GYIAGSKELIQYLKRTCPAH-  337 (489)
T ss_pred             HHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc-eEEEcCHHHHHHHHHhCccc-
Confidence            99999999999999999999854321         12222257999999999778776 99988877666655432210 


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARI-----EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F  300 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~  300 (397)
                          ...+..+.....+..++++.+..     ...+..++++++++++++.|++ + ++.+.++..   ...+.+.+. .
T Consensus       338 ----~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~-~-G~~v~~~~~---sp~~~l~l~~~  408 (489)
T PLN02483        338 ----LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQK-M-GFEVLGDND---SPVMPIMLYNP  408 (489)
T ss_pred             ----cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCC---CCEEEEEECCH
Confidence                01122333444445567776542     2345678899999999999999 4 666654432   223333332 1


Q ss_pred             CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ....++.+.|.  ||.+.+..+...                +...+.+||+++..++++||++++++|+++.+.+.-+
T Consensus       409 ~~~~~~~~~Ll~~GI~v~~~~fp~~----------------p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~~~  470 (489)
T PLN02483        409 AKIPAFSRECLKQNVAVVVVGFPAT----------------PLLLARARICISASHSREDLIKALEVISEVGDLVGIK  470 (489)
T ss_pred             HHHHHHHHHHHHCCcEEeeeCCCCC----------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCce
Confidence            23345666654  888875322111                1123679999999899999999999999998766443

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.96  E-value=6.3e-27  Score=221.54  Aligned_cols=319  Identities=16%  Similarity=0.146  Sum_probs=223.7

Q ss_pred             CCHHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           9 IDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      +++.+.+++.+.+.... ..+.   +.......+...++++.++++++.+ ++|++++| ++++..++.++.    ++||
T Consensus        57 ~~~~i~~a~~~~~~~~~~~~~~---~~~~~G~~~l~~~l~~~la~~~g~~-~~i~~tsG-~~a~~~~~~~l~----~~gd  127 (397)
T PRK06939         57 NHPELIAAAKAALDSHGFGMAS---VRFICGTQDLHKELEEKLAKFLGTE-DAILYSSC-FDANGGLFETLL----GKED  127 (397)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcc---cccccCCcHHHHHHHHHHHHHhCCC-cEEEEcCh-HHHHHHHHHHhC----CCCC
Confidence            68899999999886621 1111   1111123457788999999999976 56777666 788888888876    8999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGEL  161 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l  161 (397)
                      +|++++++|+++...+...   |.++..++.     +|++++++++++      ++++|+..+.+|++|...++++|.++
T Consensus       128 ~vi~~~~~~~~~~~~~~~~---~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~l  199 (397)
T PRK06939        128 AIISDALNHASIIDGVRLC---KAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDL  199 (397)
T ss_pred             EEEEEhhhhHHHHHHHHhc---CCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHH
Confidence            9999999999998887766   777777764     488899888763      67888888899999999999999999


Q ss_pred             HHhcCcEEEEecccccCcccc------ccCc--ccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCcccccc
Q psy8850         162 CRSKGVIFHCDAAQAVGKIDI------NIQN--YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR  232 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~~~------~~~~--~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (397)
                      |++||++||+|++|+.+....      ....  .++|++++|+|| +.|+. +|+++++++..+.+.......     ..
T Consensus       200 a~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G~v~~~~~~~~~l~~~~~~~-----~~  273 (397)
T PRK06939        200 ADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GGYTAGRKEVIDWLRQRSRPY-----LF  273 (397)
T ss_pred             HHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ceEEEeCHHHHHHHHHhCccc-----cc
Confidence            999999999999997543211      1111  146899999999 54664 599998876655554321110     11


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC
Q psy8850         233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK  311 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  311 (397)
                      .++++...+.++.++++.+.. ..++.+++.++++++.+.|++ + ++.+..+ .   ..++.+.++. .+..++.+.|.
T Consensus       274 ~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~L~  346 (397)
T PRK06939        274 SNSLAPAIVAASIKVLELLEE-SDELRDRLWENARYFREGMTA-A-GFTLGPG-E---HPIIPVMLGDAKLAQEFADRLL  346 (397)
T ss_pred             cCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCCcCCC-C---CCEEEEEECCHHHHHHHHHHHH
Confidence            223333445555566776643 356788899999999999988 4 4443322 1   2333334432 23566777765


Q ss_pred             --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                        ||.+.++. +..               ...+.++||++++.++++++|++++++|++++++.
T Consensus       347 ~~gI~v~~~~-~~~---------------~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        347 EEGVYVIGFS-FPV---------------VPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             HCCceEeeeC-CCC---------------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence              88877542 211               01123689999998889999999999999988764

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.96  E-value=1.7e-26  Score=217.26  Aligned_cols=319  Identities=18%  Similarity=0.186  Sum_probs=217.5

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.+++...+...++++.++++.|.+  ..++++||++|+++++.++.    ++||+|+++...|+++...+.. +.+.|+
T Consensus        56 ~~y~R~~~p~~~~le~~lA~l~g~~--~av~~sSGt~Al~~al~~ll----~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi  129 (433)
T PRK08134         56 HVYSRISNPTVAVLEERVAALEGGV--GAIATASGQAALHLAIATLM----GAGSHIVASSALYGGSHNLLHYTLRRFGI  129 (433)
T ss_pred             ceeecCcChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCccHHHHHHHHHHHhhCCe
Confidence            3344444567899999999999987  47889999999999998886    7899999999999988776654 344599


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++++++.+     |+++++++++++|++|++++++||+|.+.|+++|+++||++|+++|+|++++.+.....+ .+++|+
T Consensus       130 ~v~~vd~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl-~~GaD~  203 (433)
T PRK08134        130 ETTFVKPG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF-EHGADL  203 (433)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCE
Confidence            99999875     799999999999999999999999999999999999999999999999999988765443 669999


Q ss_pred             EEeccccccCCCC--ceEEEEec-C-------CCCccccccccCC-ccc------------------cccCCCCchhHHH
Q psy8850         192 MSFSAHKIYGPKG--IGALYIRR-N-------PRTRIEAQIHGGG-HEY------------------GLRSGTLATHQIV  242 (397)
Q Consensus       192 ~~~s~~K~~g~~g--~g~~~~~~-~-------~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~  242 (397)
                      +++|.||++|+.|  +|.+++.. .       ....+.+...++. ...                  .......+....+
T Consensus       204 vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~  283 (433)
T PRK08134        204 VYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAW  283 (433)
T ss_pred             EEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            9999999766655  44444431 1       1111111111110 000                  0000111111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCC--ChHH
Q psy8850         243 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI--EGES  305 (397)
Q Consensus       243 ~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~  305 (397)
                      .+...++    .++.+.++..+++.++.+.|++ .|.+..+..|.               ...++++.|.+++.  ...+
T Consensus       284 l~~~gL~----tl~~R~~~~~~nA~~la~~L~~-~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~  358 (433)
T PRK08134        284 QLLQGIE----TLPLRMERHVANTRKVVAFLAS-HPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRK  358 (433)
T ss_pred             HHhcCCC----cHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCCHHHHHH
Confidence            1111111    3667788888889999999988 77654332211               23467888888641  1345


Q ss_pred             HHHHhC--CcEecccCccCC----CCCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         306 LLMAIK--DIAVSSGSACTS----ASLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~----~~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +.+.|+  .....-|...+.    ..+.+    ....+..|+.+    +.||||++.    |+.|.+++.|.+++++.++
T Consensus       359 f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~----~liRlsvGl----E~~~dli~dl~~Al~~~~~  430 (433)
T PRK08134        359 FIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGE----GTIRLSIGL----EDADDLIDDLKRALKAAEK  430 (433)
T ss_pred             HHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhhhh
Confidence            666665  334444443332    22111    12334566664    899999997    6778888888888876554


Q ss_pred             c
Q psy8850         376 L  376 (397)
Q Consensus       376 ~  376 (397)
                      .
T Consensus       431 ~  431 (433)
T PRK08134        431 A  431 (433)
T ss_pred             c
Confidence            3

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.96  E-value=4.4e-27  Score=218.08  Aligned_cols=311  Identities=14%  Similarity=0.116  Sum_probs=218.0

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g  110 (397)
                      .+.+++...+....+++.|+++.|.  +++++++|+++|+.+++.++.    ++||+|+++.+.|++....+... ...|
T Consensus        44 ~~~Y~R~~npt~~~Le~~lA~leg~--e~ivvt~gg~~Ai~~~l~all----~~Gd~Il~~~~~y~~~~~~~~~~~~~~g  117 (388)
T PRK08861         44 KYDYTRSGNPNRGLLEQTLSELESG--KGAVVTNCGTSALNLWVSALL----GPDDLIVAPHDCYGGTYRLFNTRANKGD  117 (388)
T ss_pred             CccccCCCCchHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCchHHHHHHHHHHHhcCC
Confidence            3445566667889999999999996  489999999999999999887    79999999999999877666443 3347


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      ++++.++.     .|++++++++++++++|++++|+||||.+.|+++|.++|+++|+++++|++|..+.....+ .+++|
T Consensus       118 i~v~~vd~-----~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl-~~GaD  191 (388)
T PRK08861        118 FKVQFVDQ-----SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPL-ELGAD  191 (388)
T ss_pred             eEEEEECC-----CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCc-ccCCC
Confidence            88888863     4899999999999999999999999999999999999999999999999999876543222 45899


Q ss_pred             EEEecccc-ccCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHK-IYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K-~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      ++++|+|| +.|+.+  .|+++.+++ ..+++.....       ......+....+.+...++    .+.-+.++..+++
T Consensus       192 ivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~-------~~G~~~~p~~a~l~~rgl~----Tl~lR~~~~~~~a  260 (388)
T PRK08861        192 FVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGN-------CIGATGTPFDSYMTLRGIR----TLGARMRVHEESA  260 (388)
T ss_pred             EEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHh-------ccCCCCChHHHHHHHhcCC----CHHHHHHHHHHHH
Confidence            99999999 566544  477766543 2222221110       1112222222222222222    2455677888888


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCC---hHHHHHHhC--CcEecccCccCC----
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIE---GESLLMAIK--DIAVSSGSACTS----  323 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---~~~~~~~l~--~i~~~~g~~~~~----  323 (397)
                      ..+.+.|++ .|.+..+.-|.              ...++++.|.+++ +   ...+.+.|+  .+...-|...+.    
T Consensus       261 ~~~a~~L~~-~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~-~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p  338 (388)
T PRK08861        261 QQILAYLQT-QSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG-SFEQLKVFVKALALFSLAESLGGVESLICHP  338 (388)
T ss_pred             HHHHHHHHh-CCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC-CHHHHHHHHhcCCcceEccCCCCCcceeeCC
Confidence            888999988 77664332211              2356788888863 2   234555555  444455543332    


Q ss_pred             CCCChh----hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         324 ASLEPS----YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       324 ~~~~~~----~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ..+.+.    ...+..|+.+    +.||+|++.    |++|.+++.|+++++++.|
T Consensus       339 ~~~~h~~~~~~~~~~~gi~~----~liRlsvGl----E~~~dli~Dl~~al~~~~~  386 (388)
T PRK08861        339 ASMTHRAMGEEALAEAGVSQ----QLLRLSVGL----EDAQDLIADLDQAFAKAAE  386 (388)
T ss_pred             CcccccccCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHHHHHHHh
Confidence            222211    2233556554    899999997    6788888888888887765

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.96  E-value=6.8e-27  Score=222.15  Aligned_cols=335  Identities=17%  Similarity=0.217  Sum_probs=229.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++..++|+.|++++...+...+  +++.+ .+..+....+.+++ +++.+++++|++.+.|+++ |||+|+..++.++. 
T Consensus        32 ~~~n~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~-sgt~al~~~l~~l~-  108 (416)
T PRK00011         32 ASENFVSPAVMEAQGSVLTNKYAEGYPGK-RYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPH-SGSQANAAVYFALL-  108 (416)
T ss_pred             cccCcCCHHHHHHHhchhhcccccCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCceeeecC-CchHHHHHHHHHhc-
Confidence            4566789999999988765433  44444 34334444445555 6889999999987666554 56889999999886 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHH--HhhCCcEEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~--~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~  156 (397)
                         ++||+|+++.++|+++......  ....|.+++.++.+ .++.+|++++++++++ ++++|++++.  .+|...|++
T Consensus       109 ---~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~--~~~~~~~~~  183 (416)
T PRK00011        109 ---KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGAS--AYSRPIDFK  183 (416)
T ss_pred             ---CCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCC--cCCCccCHH
Confidence               7999999999999876432211  12236788888887 4578999999999975 7898888644  356778999


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc-----ccccCcccccEEEecccc-ccCCCCceEEEEe-cCCCCccccccccCCccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEY  229 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~  229 (397)
                      +|.++|+++|+++|+|++|+.|..     +..+.  +.|++++|+|| +.|+.| |+++.+ ++..+.+......     
T Consensus       184 ~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~~~~-----  255 (416)
T PRK00011        184 RFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSAVFP-----  255 (416)
T ss_pred             HHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHHhCc-----
Confidence            999999999999999999976543     22333  67999999999 667765 777775 3444444332211     


Q ss_pred             cccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESL  306 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  306 (397)
                       ...+++....++++..++.. ..++++++.+++.++++++++.|++ + ++.+... . ...+++++.+++  .+..++
T Consensus       256 -~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~-~~~~~~~i~~~~~~~~~~~~  330 (416)
T PRK00011        256 -GIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAE-R-GFRVVSG-G-TDNHLVLVDLRSKGLTGKEA  330 (416)
T ss_pred             -cccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-C-CCeeeec-C-CCCeEEEEeCcccCCCHHHH
Confidence             11233444455555445443 3446788899999999999999998 4 6766531 1 224666777653  245677


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC----CCCHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~----~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+.|.  ||.+..+.....             ...+.....+|++...    .++.+|++++++.|++++..
T Consensus       331 ~~~L~~~GI~v~~~~~p~~-------------~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        331 EAALEEANITVNKNAVPFD-------------PRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             HHHHHHcCcEEccCcCCCC-------------CCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence            77775  888865431110             0011123568986422    35799999999999988664

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.96  E-value=1.9e-26  Score=218.00  Aligned_cols=322  Identities=19%  Similarity=0.172  Sum_probs=221.5

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      .+|++++++.+++..+...+..  ...-+...+...++++.+++++|.+  ..++.++|++|+..++..+...  .+++.
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~--s~~~~g~~~~~~~Le~~la~~~g~~--~~l~~~sG~~an~~ai~~l~~~--~~~~~  133 (402)
T TIGR01821        60 QHPEVLQAMHETLDKYGAGAGG--TRNISGTNIPHVELEAELADLHGKE--SALVFTSGYVANDATLATLAKI--IPGCV  133 (402)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcc--hhhhhCCcHHHHHHHHHHHHHhCCC--eEEEECchHHHHHHHHHHhhCC--CCCCE
Confidence            4789999999999874322211  1111122456788999999999964  5666777899999999877621  25677


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      |+.....|.+....+...   |.++..++.+     |+++++++++    +++++|++++++||+|.+.|+++|.++|++
T Consensus       134 v~~~~~~h~s~~~~~~~~---g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~  205 (402)
T TIGR01821       134 IFSDELNHASMIEGIRHS---GAEKFIFRHN-----DVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADK  205 (402)
T ss_pred             EEEcchHhHHHHHHHHHc---CCeEEEECCC-----CHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHH
Confidence            877777888887776554   7776666543     6788888775    367899999999999999999999999999


Q ss_pred             cCcEEEEecccccCcccc------ccCc--ccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         165 KGVIFHCDAAQAVGKIDI------NIQN--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~~------~~~~--~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      ||+++|+|++|+.|....      ....  ..+|+++.+++|.+|..| |+++.+++..+.+.....+    ..+ .++.
T Consensus       206 ~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~i~~~~~~~~~l~~~~~~----~~~-t~~~  279 (402)
T TIGR01821       206 YGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG-GYIAASRKLIDAIRSYAPG----FIF-TTSL  279 (402)
T ss_pred             cCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC-ceeecCHHHHHHHHHhCcC----cee-cCcC
Confidence            999999999998554211      0001  146899899999777665 8888776654444322111    111 2234


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHh--C-C
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--K-D  312 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~-~  312 (397)
                      +...+++..++++.+.+. ..+.++..++++++.+.|++ + ++.+..+.    ..++.+.++. ....++.+.|  + |
T Consensus       280 ~~~~~aaa~aaL~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~i~~i~~~~~~~a~~~~~~L~~~~G  352 (402)
T TIGR01821       280 PPAIAAGATASIRHLKES-QDLRRAHQENVKRLKNLLEA-L-GIPVIPNP----SHIVPVIIGDAALCKKVSDLLLNKHG  352 (402)
T ss_pred             CHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHH-c-CCCcCCCC----CCEEEEEeCCHHHHHHHHHHHHhcCC
Confidence            445566666888877654 55666777889999999988 4 55544332    3344554432 1245676665  2 7


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      |.+.+......                +.+...|||+++..++++||++++++|+++++++
T Consensus       353 i~v~~~~~p~~----------------~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  397 (402)
T TIGR01821       353 IYVQPINYPTV----------------PRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL  397 (402)
T ss_pred             EEEEeECCCCC----------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            88876432111                1123689999999999999999999999988654

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=2.2e-27  Score=220.50  Aligned_cols=280  Identities=17%  Similarity=0.134  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC-CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC
Q psy8850          43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN  121 (397)
Q Consensus        43 ~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~  121 (397)
                      ..++++++++++|+++++|++|+|+++++.+++.++.    ++| |+|++..|.|+.+...++..   |.+++.+|.+++
T Consensus        62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~----~~g~d~vlv~~P~y~~y~~~~~~~---g~~v~~v~~~~~  134 (354)
T PRK04635         62 PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFC----EPGQDSIACFGPTYGMYAISAETF---NVGVKALPLTAD  134 (354)
T ss_pred             HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHHHHHHc---CCEEEEEecCCC
Confidence            5778999999999999999999999999999999887    677 89999999999887666655   999999999877


Q ss_pred             CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc-CcEEEEecccccCccc---ccc-CcccccEEEecc
Q psy8850         122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK-GVIFHCDAAQAVGKID---INI-QNYKVDLMSFSA  196 (397)
Q Consensus       122 ~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~-gi~livD~a~~~~~~~---~~~-~~~~~d~~~~s~  196 (397)
                      +.+|++.+++ + +++++|++++|+||||.++|.+++.++++.. +++||+|++|.-....   .++ ...+.-+++.|+
T Consensus       135 ~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~  212 (354)
T PRK04635        135 YQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTL  212 (354)
T ss_pred             CCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEech
Confidence            7889998874 4 6899999999999999999999998888763 7999999998632211   111 111344778999


Q ss_pred             ccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy8850         197 HKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGL  273 (397)
Q Consensus       197 ~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l  273 (397)
                      ||.+|.+|  +|+++++++....+......         ...+.....+..++++.. .+.+.+..+++.++++++.+.|
T Consensus       213 SK~~~l~GlRlG~~i~~~~~~~~l~~~~~~---------~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L  283 (354)
T PRK04635        213 SKAFALAGARCGFTLANEELIEILMRVIAP---------YPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL  283 (354)
T ss_pred             HHHhhhhHHHHhhhhCCHHHHHHHHhhcCC---------CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99777555  79999887665555433211         112222222222334321 1235566777888889999999


Q ss_pred             hhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC
Q psy8850         274 MESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG  351 (397)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~  351 (397)
                      ++ ++++.+..+ .   +.++++.++  +..++.+.+.  ||.+.....  .                 ...+++||+++
T Consensus       284 ~~-~~~~~~~~~-~---g~f~~~~~~--~~~~~~~~l~~~gv~v~~~~~--~-----------------~~~~~lRis~~  337 (354)
T PRK04635        284 SM-YGGAKVLEG-N---GNYVLAKFD--DVDAVFKALWDAGIVARAYKD--P-----------------RLANCIRFSFS  337 (354)
T ss_pred             Hh-CCCceECCC-C---CcEEEEECC--CHHHHHHHHHHCCEEEEECCC--C-----------------CCCCeEEEEeC
Confidence            98 666665543 2   345566665  3556666555  787764311  0                 11378999986


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy8850         352 RFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       352 ~~~~~~~i~~~~~~l~~~  369 (397)
                         +.+++++++++|++.
T Consensus       338 ---~~e~~~~l~~al~~~  352 (354)
T PRK04635        338 ---NRAETDKLIGLIRNQ  352 (354)
T ss_pred             ---CHHHHHHHHHHHHHh
Confidence               689999999999764

>PLN02452 phosphoserine transaminase

Probab=99.96  E-value=1.1e-26  Score=213.09  Aligned_cols=333  Identities=17%  Similarity=0.127  Sum_probs=240.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCC--CCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCChhHHHHHHHHHh
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNP--ASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGA   78 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--i~~~~g~t~a~~~~l~~l   78 (397)
                      .++++..|++|++++++.+.++.+..  .......+..+.+.+.++++.|+++++.+.+.  +++..|||.++++++..+
T Consensus        12 ~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl   91 (365)
T PLN02452         12 SAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNL   91 (365)
T ss_pred             eCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhc
Confidence            46777889999999998875432111  11122335677899999999999999986442  666789999999999999


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC---CCCHHHHHHHhcCCceEEEEecccCccccc-cc
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG---LITLSQLEEKICSDTILVSVMLVNNEIGVI-QP  154 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~---~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~-~~  154 (397)
                      +    .+|+++++......+-.. .+.+.+.|...+........   .+++++++  ..++.++|.+++..+.||+. .|
T Consensus        92 ~----~~~~~~l~~~~G~fg~r~-~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnETstGv~~~~  164 (365)
T PLN02452         92 C----KPGDKADFVVTGSWSKKA-AKEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANETIHGVEFKD  164 (365)
T ss_pred             C----CCCCeEEEEECCHHHHHH-HHHHHHhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCCCCCcEecCc
Confidence            8    677888777666655543 34444556544433222222   45666542  23568999999999999995 77


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCcccccccc---CC--ccc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHG---GG--HEY  229 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~---~~--~~~  229 (397)
                      ++++.      ++++++|++++++..++|+..+++|+  +|.||++||+|+|+++++++++++..+....   +.  ...
T Consensus       165 ~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~  236 (365)
T PLN02452        165 YPDVG------NVPLVADMSSNFLSKPVDVSKYGVIY--AGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAEN  236 (365)
T ss_pred             ccccC------CCeEEEECCccccCcccCHHHcCEEE--EecccccCCCCeEEEEEcHHHHhhcccCCCchhhHHHHHhc
Confidence            77764      38999999999999999999777655  6999977999999999999877665432221   11  011


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEe-CCCCCCCCceEEEEecCC-ChHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYIN-GDMNNRIPHNLNISFNFI-EGES  305 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~  305 (397)
                      ....+||++..++++.++++++.+  +++.+.++.+++++++++.|++ .+++... .++..+....+.|.+++. ...+
T Consensus       237 ~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~-~~G~y~~~~~~~~rs~~~vsF~~~~~~~~~~  315 (365)
T PLN02452        237 DSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDE-SNGFYVCPVEKSVRSLMNVPFTLGGSELEAE  315 (365)
T ss_pred             CCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChHHhCCeEEEEEcCCchhHHH
Confidence            233479999999999999999976  6999999999999999999998 7776222 111223344556666553 3456


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      |.+.++  |+..-+|....                     +.+|+|+...++.++|+.+++.|+++.++
T Consensus       316 f~~~~~~~g~~~~~G~r~~---------------------gg~R~s~yna~~~~~v~~L~~~m~~f~~~  363 (365)
T PLN02452        316 FVKEAAKAGMVQLKGHRSV---------------------GGMRASIYNAMPLAGVEKLVAFMKDFQAK  363 (365)
T ss_pred             HHHHHHHCCCcccCCcccc---------------------CceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            666665  77777664221                     33999999999999999999999998765

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.96  E-value=4.2e-27  Score=219.99  Aligned_cols=307  Identities=16%  Similarity=0.150  Sum_probs=215.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEE
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRV  113 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v  113 (397)
                      +++...+...++++.+++++|.+  ..++++||+.|+..++.++.    ++||+|+++.+.|+++...+..... .|+++
T Consensus        55 y~r~~~pt~~~Le~~lA~l~G~~--~al~~~sG~~Ai~~~l~al~----~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~  128 (386)
T PRK06767         55 YSRLGNPTVKLFEERMAVLEGGE--EALAFGSGMAAISATLIGFL----KAGDHIICSNGLYGCTYGFLEVLEEKFMITH  128 (386)
T ss_pred             ccCCCCcchHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEE
Confidence            34344456789999999999975  45666777889999988887    7999999999999988877766543 37777


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS  193 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~  193 (397)
                      ..++..     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+.....+ ..++|+++
T Consensus       129 ~~~~~~-----d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl-~~g~Div~  202 (386)
T PRK06767        129 SFCDME-----TEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPL-ELGCDAVV  202 (386)
T ss_pred             EEeCCC-----CHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCcEEE
Confidence            766543     789999999999999999999999999999999999999999999999999855443332 34789999


Q ss_pred             eccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         194 FSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY  270 (397)
Q Consensus       194 ~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~  270 (397)
                      +|++|++++.|   .|+++++++.+..+......      ...+..+....+.....++    .+..+.++..+++.++.
T Consensus       203 ~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~------~~g~~~~~~~a~l~~~~L~----tl~~r~~~~~~~a~~la  272 (386)
T PRK06767        203 HSATKYIGGHGDVVAGVTICKTRALAEKIRPMRK------DIGGIMAPFDAWLLLRGLK----TLAVRMDRHCDNAEKIV  272 (386)
T ss_pred             ecCcceecCCCCceeEEEEeChHHHHHHHHHHHH------HhCCCCCHHHHHHHHcCCC----cHHHHHHHHHHHHHHHH
Confidence            99999554434   58888887655443211110      0011222222222222222    34556788899999999


Q ss_pred             HHHhhhcCcEEEeCCC--------CCCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCCC----CCCh----hh
Q psy8850         271 NGLMESIEEIYINGDM--------NNRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTSA----SLEP----SY  330 (397)
Q Consensus       271 ~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~~----~~~~----~~  330 (397)
                      +.|++ .|++..+..|        ....++++.|.+++.  +..++.+.|+  ++.++-|...+..    .+.+    ..
T Consensus       273 ~~L~~-~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~  351 (386)
T PRK06767        273 SFLKN-HDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAE  351 (386)
T ss_pred             HHHHc-CCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHH
Confidence            99999 8887744321        112367888888642  3567888887  6677777655432    1111    11


Q ss_pred             HHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         331 VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       331 ~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ..+..|+.+    +.||||++.    |+.|.+++.|.+++..
T Consensus       352 ~~~~~gi~~----~l~R~svGl----E~~~dl~~dl~~al~~  385 (386)
T PRK06767        352 LRQEMGIYD----NLIRLSVGL----ESWEDIVSDLEQALKK  385 (386)
T ss_pred             HHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            223455543    899999997    6677788888777653

>PLN02263 serine decarboxylase

Probab=99.96  E-value=9.3e-26  Score=209.61  Aligned_cols=293  Identities=15%  Similarity=0.125  Sum_probs=220.6

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCC--cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEE
Q psy8850          38 TAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY  115 (397)
Q Consensus        38 ~~~~~~~~~~~~la~~~~~~~~--~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~  115 (397)
                      ...+...++-+++++++|.+++  ..++|+|||+|+..++.+.+..+  +...+++++..|.|+.+++..+   |++++.
T Consensus       130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~--~~~vvy~S~~aH~Sv~KAa~ll---gi~~~~  204 (470)
T PLN02263        130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF--PDGILYASRESHYSVFKAARMY---RMECVK  204 (470)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc--CCcEEEEcCCccHHHHHHHHhc---CCcceE
Confidence            5667888899999999999764  48999999999999998776432  3458999999999999999998   999999


Q ss_pred             eccCCCCCCCHHHHHHHhcCC---ceEEEEecccCcccccccHHHHHHHHHhcCc-----EEEEecccccCccc------
Q psy8850         116 LKPKNNGLITLSQLEEKICSD---TILVSVMLVNNEIGVIQPILEIGELCRSKGV-----IFHCDAAQAVGKID------  181 (397)
Q Consensus       116 v~~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi-----~livD~a~~~~~~~------  181 (397)
                      ||.++++.+|+++|+++|.++   +.+|+.+.+++++|.+.|+++|.++|+++|+     |+|||+|++....+      
T Consensus       205 Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~  284 (470)
T PLN02263        205 VDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP  284 (470)
T ss_pred             eccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc
Confidence            999999999999999999754   5678889999999999999999999999997     99999999865443      


Q ss_pred             -cccCcccccEEEecccc-ccCCCCceEEEEecCCCCccc---cccccCCccccccCCCCchhHHHHHHHHHHHH-HHHH
Q psy8850         182 -INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIE---AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEM  255 (397)
Q Consensus       182 -~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~  255 (397)
                       +++.. ++|+++.++|| ++.|.++|++++++.....+.   +++...   ..-..++.+....+.++.+++.+ .+++
T Consensus       285 ~~df~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~---d~ti~gSR~g~~al~lW~~L~~~G~~G~  360 (470)
T PLN02263        285 KVTFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR---DATIMGSRNGHAPIFLWYTLNRKGYRGF  360 (470)
T ss_pred             ccCCCc-CccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCC---CCCcCCCCCcHHHHHHHHHHHHhCHHHH
Confidence             33333 49999999999 566889999999975432221   111111   11123444544566677777765 5689


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCCcEecccCccCCCCCChhhHHHhh
Q psy8850         256 KEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRAL  335 (397)
Q Consensus       256 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~  335 (397)
                      .++.++..++++++.+.|++ . ++..+..+.     ...+.|.......+   .++-.+..                  
T Consensus       361 ~~~i~~~~~~A~~l~~~l~~-~-g~~~~~~p~-----s~~V~f~~p~~~~~---~~gW~L~~------------------  412 (470)
T PLN02263        361 QKEVQKCLRNAHYLKDRLRE-A-GISAMLNEL-----SSTVVFERPKDEEF---VRRWQLAC------------------  412 (470)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-C-CCeEEeCCC-----ceEEEEecCchHHh---hcceEEcc------------------
Confidence            99999999999999999999 5 565554432     23344442222111   12322221                  


Q ss_pred             CCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         336 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       336 g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                            .++.+|+++....+.+.+|++++.|++..+..
T Consensus       413 ------~~~~~Hivvmphv~~~~id~fi~DL~~~~~~~  444 (470)
T PLN02263        413 ------QGNIAHVVVMPSVTIEKLDYFLKELVEKRSTW  444 (470)
T ss_pred             ------CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence                  12568999998778999999999998887643

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.96  E-value=5.1e-27  Score=222.17  Aligned_cols=319  Identities=13%  Similarity=0.122  Sum_probs=212.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++.+.+.....+..    ..+|.......++|+++++++      ++++++|++|+|+++|+.+++. +.  
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~-~~--  119 (409)
T PRK07590         47 PLPPAVIEAMHKAVDEMGTAET----FRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILD-IF--  119 (409)
T ss_pred             CCCHHHHHHHHHHHhcccccCC----ccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHH-hc--
Confidence            4578889999888765221111    111222335567788887775      5788899999999999988643 44  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcE-----------EEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccc
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFR-----------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG  150 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~-----------v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG  150 (397)
                        .+||+|++.+|+|+.+...+...   |.+           ++.+|.++++.+.++ +.   .+++++|++++|+||||
T Consensus       120 --~~gd~V~v~~P~Y~~~~~~~~~~---g~~~~~~~~~~~~~~~~v~~~~~~~~~~d-~~---~~~~k~i~l~nP~NPTG  190 (409)
T PRK07590        120 --GPDNTIAVTDPVYPVYVDTNVMA---GRTGEANEDGRYSGIVYLPCTAENNFVPE-LP---EEKVDIIYLCFPNNPTG  190 (409)
T ss_pred             --CCCCEEEEeCCCCcchHHHHHHc---CCcccccccccccceeEeecccccCCccc-Cc---ccCceEEEEeCCCCCcC
Confidence              68999999999999999888887   665           888888744323222 11   25789999999999999


Q ss_pred             ccccH---HHHHHHHHhcCcEEEEecccccCc----cccccCcc----cccEEEeccccccCCCC--ceEEEEecCCCCc
Q psy8850         151 VIQPI---LEIGELCRSKGVIFHCDAAQAVGK----IDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTR  217 (397)
Q Consensus       151 ~~~~l---~~i~~l~~~~gi~livD~a~~~~~----~~~~~~~~----~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~  217 (397)
                      .+++.   ++|+++|++||++||+|++|+...    .+..+..+    +..+++.|++|.+|.+|  +|+++++++....
T Consensus       191 ~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~~  270 (409)
T PRK07590        191 TVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKGK  270 (409)
T ss_pred             CcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHhhh
Confidence            99994   568888999999999999987221    11112111    23577899999666445  7999988766542


Q ss_pred             cc--------cccccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC
Q psy8850         218 IE--------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN  288 (397)
Q Consensus       218 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  288 (397)
                      +.        ......   ........+.....++.++++. ...++++..+.++++++++.+.|++ . ++.+..+.+ 
T Consensus       271 ~~~~~~~~~~~~~~~~---~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~~~~g-  344 (409)
T PRK07590        271 TSDGEGVSLNSLWNRR---QSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLES-A-GFEVYGGVN-  344 (409)
T ss_pred             ccccchhhhHHHHHHH---HhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHh-c-CCceecCCc-
Confidence            20        000000   0000112333334444344532 2345677888999999999999998 4 555544322 


Q ss_pred             CCCceEEEEecC-CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHH
Q psy8850         289 RIPHNLNISFNF-IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK  364 (397)
Q Consensus       289 ~~~~~~~~~~~~-~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  364 (397)
                        +..+++.++. .+..++...+.   +|.+.+|..|..                 .+.+++||++.  .+++++++.++
T Consensus       345 --~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~--~~~~~l~~~l~  403 (409)
T PRK07590        345 --APYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGP-----------------SGEGYFRLSAF--GSRENVLEAME  403 (409)
T ss_pred             --ceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCC-----------------CCCCEEEEEcc--CCHHHHHHHHH
Confidence              4567788764 35566666552   899999865532                 11378999964  47899999999


Q ss_pred             HHHHH
Q psy8850         365 LLKMK  369 (397)
Q Consensus       365 ~l~~~  369 (397)
                      +|.++
T Consensus       404 rl~~~  408 (409)
T PRK07590        404 RIKKA  408 (409)
T ss_pred             HHHhh
Confidence            98765

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.8e-26  Score=214.79  Aligned_cols=286  Identities=14%  Similarity=0.115  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC-CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-
Q psy8850          43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-  120 (397)
Q Consensus        43 ~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-  120 (397)
                      ..++++.+++++++++++|++++|+++++.+++.++.    .+| ++|++++|.|..+....+..   |.+++.+|.++ 
T Consensus        61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~----~~g~~~vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~  133 (364)
T PRK04781         61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC----VPGRDAVLVTPPVFGMYAVCARLQ---NAPLVEVPLVDG  133 (364)
T ss_pred             HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHHHHHHc---CCEEEEEecCCC
Confidence            5789999999999999999999999999999999887    677 79999999888776655555   99999999742 


Q ss_pred             -C-CCCCHHHHHHH-hcCCceEEEEecccCcccccccHHHHHHHHHh--cCcEEEEecccccCccc---cc-cCcccccE
Q psy8850         121 -N-GLITLSQLEEK-ICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKID---IN-IQNYKVDL  191 (397)
Q Consensus       121 -~-~~~d~~~l~~~-i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~--~gi~livD~a~~~~~~~---~~-~~~~~~d~  191 (397)
                       + ..+|++++++. ..++++++++++|+||||.++|.+++.++++.  ++++||+|++|.-....   .. ....+..+
T Consensus       134 ~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi  213 (364)
T PRK04781        134 ADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLA  213 (364)
T ss_pred             ccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEE
Confidence             2 35788887654 46789999999999999999998887777764  48999999998722211   11 12224568


Q ss_pred             EEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKR  268 (397)
Q Consensus       192 ~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~  268 (397)
                      ++.|++|.+|.+|  +|+++++++..+.+......         ...+.....+...+++.. .+...+..++++++++.
T Consensus       214 ~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~---------~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~  284 (364)
T PRK04781        214 VLRTLSKAHALAAARIGSLIANAELIAVLRRCQAP---------YPVPTPCAALAEQALSAPALAVTARRVAEVRAERER  284 (364)
T ss_pred             EEecChhhcccccceeeeeeCCHHHHHHHHhccCC---------CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            8999999766445  79999887766555443211         112222222222444422 12345556678888999


Q ss_pred             HHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceE
Q psy8850         269 LYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI  346 (397)
Q Consensus       269 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i  346 (397)
                      +.+.|++ ++++....+..   +.++++.++  +..++.+.+.  ||.+.++..+..                  ..+++
T Consensus       285 l~~~L~~-~~~~~~~~p~~---g~f~~~~~~--~~~~~~~~l~~~gI~v~~~~~~~~------------------~~~~~  340 (364)
T PRK04781        285 LHAALAQ-LPGVRRVYPSQ---GNFLLVRFD--DAEAAFQALLAAGVVVRDQRAAPR------------------LSDAL  340 (364)
T ss_pred             HHHHHHh-CCCCCeECCCC---CcEEEEEcC--CHHHHHHHHHHCCeEEeeCCCCCC------------------CCCeE
Confidence            9999988 77754333323   456667765  3556666665  999998753311                  13789


Q ss_pred             EEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         347 RFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       347 Ri~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ||+++   +.+++++++++|+++..
T Consensus       341 Ris~~---~~~~~~~l~~al~~~~~  362 (364)
T PRK04781        341 RITLG---TPEQNDRVLAALQRTQA  362 (364)
T ss_pred             EEeCC---CHHHHHHHHHHHHHHHh
Confidence            99998   58999999999987643

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.96  E-value=2.6e-26  Score=217.50  Aligned_cols=322  Identities=18%  Similarity=0.173  Sum_probs=216.9

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      ++|.+++++.+.+..+..+... . ..-+...+...++++.+++++|.+ +.++++ +|++|+..++..+...  .+|+.
T Consensus        61 ~~p~v~~a~~~~~~~~~~~~~~-s-~~~~~~~~~~~~Le~~la~~~g~~-~~i~~~-sG~~a~~~~i~~l~~~--~~g~~  134 (410)
T PRK13392         61 QHPDVIGAMVDALDRYGAGAGG-T-RNISGTSHPHVLLERELADLHGKE-SALLFT-SGYVSNDAALSTLGKL--LPGCV  134 (410)
T ss_pred             CCHHHHHHHHHHHHHcCCCCch-h-hhcccChHHHHHHHHHHHHHhCCC-CEEEEC-cHHHHHHHHHHHHhcC--CCCCE
Confidence            5889999999988764322211 1 111122335679999999999964 445554 5578888888866521  36788


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      |+++...|.++...+...   |.++..++.+     |.+++++.+.    +++++|++++++||+|.+.|+++|.++|++
T Consensus       135 vi~~~~~h~s~~~~~~~~---g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~  206 (410)
T PRK13392        135 ILSDALNHASMIEGIRRS---GAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADR  206 (410)
T ss_pred             EEEehhhhHHHHHHHHHc---CCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHH
Confidence            998888898887765544   8887776543     4555655553    578999999999999999999999999999


Q ss_pred             cCcEEEEecccccCccccc------cCc--ccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         165 KGVIFHCDAAQAVGKIDIN------IQN--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~~~------~~~--~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      ||+++|+|++|+.|.....      ...  -.+|+++.|++|.+|..| |+++.+++..+.+.....+    ..+ ....
T Consensus       207 ~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G-G~~~~~~~~~~~l~~~~~~----~~~-s~~~  280 (410)
T PRK13392        207 YNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG-GYIAASADLIDFVRSFAPG----FIF-TTAL  280 (410)
T ss_pred             cCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc-chhhcCHHHHHHHHHhCcc----hhc-cCcC
Confidence            9999999999985543111      001  146889999999666666 8887776655543332211    111 1223


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC---C
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAIK---D  312 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~---~  312 (397)
                      +....++..++++.... .....+++.++++++.+.|++ + ++.+..+.    .+++.+.++.. ...++.+.|.   |
T Consensus       281 ~~~~~~a~~aaL~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~i~~~~~~~~~~~~~~L~~~~G  353 (410)
T PRK13392        281 PPAVAAGATAAIRHLKT-SQTERDAHQDRVAALKAKLNA-N-GIPVMPSP----SHIVPVMVGDPTLCKAISDRLMSEHG  353 (410)
T ss_pred             CHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCCCCCCC----CCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            44556666678876543 344567788889999999988 4 65544322    33444444321 2456777662   8


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      |.+.+......                +.+..+|||+++..++++|+|+++++|.++.+++
T Consensus       354 I~v~~~~~p~~----------------~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~  398 (410)
T PRK13392        354 IYIQPINYPTV----------------PRGTERLRITPTPLHDDEDIDALVAALVAIWDRL  398 (410)
T ss_pred             EEEeeeCCCCC----------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence            88876532110                1123689999999999999999999999886543

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.96  E-value=2.4e-27  Score=220.58  Aligned_cols=307  Identities=15%  Similarity=0.135  Sum_probs=214.5

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~  111 (397)
                      +.+++...+...++++.+++++|.+  ++++++||+.|+.+++. +.    ++||+|+++++.|+++...+..+ ...|.
T Consensus        39 ~~Y~r~~~p~~~~le~~la~l~g~~--~~l~~~sG~~al~~~l~-ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~  111 (378)
T TIGR01329        39 YDYTRSGNPTRTALESLLAKLDKAD--RAFAFSSGMAALDVITR-LL----NNGDEIIAGDDLYGGTDRLLTQVVPRSGV  111 (378)
T ss_pred             CccCCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-Hh----CCCCEEEEcCCCchHHHHHHHHHHHHcCc
Confidence            3344344456889999999999984  67777888889887765 55    79999999999999887766543 34599


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      +++.++.+     |++++++++++++++|++++++||+|.+.|+++|+++||++|+++|+|++++.+.....+ .+++|+
T Consensus       112 ~v~~vd~~-----d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l-~~g~Di  185 (378)
T TIGR01329       112 VVVHVDTT-----DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL-ELGADI  185 (378)
T ss_pred             EEEEeCCC-----CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCcE
Confidence            99999874     899999999999999999999999999999999999999999999999999766543333 458999


Q ss_pred             EEecccc-ccCCCC--ceEEEEecCCC-CccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      +++|++| +.|+.+  .|+++++++.. +++.......       ....+....+-+...+    +.++.+.++..+++.
T Consensus       186 ~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~-------G~~~~~~~a~l~~~~l----~tl~~R~e~~~~na~  254 (378)
T TIGR01329       186 VYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNST-------GSGLAPFDCWLLLRGI----KTLAIRIEKQQENAR  254 (378)
T ss_pred             EEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhc-------CCcCCHHHHHHHHccC----CCHHHHHHHHHHHHH
Confidence            9999999 667655  78888865432 3333322110       0111111111111111    235667777788888


Q ss_pred             HHHHHHhhhcCcEEEe-CC-------------CCCCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccCC----CCC
Q psy8850         268 RLYNGLMESIEEIYIN-GD-------------MNNRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACTS----ASL  326 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~-~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~----~~~  326 (397)
                      .+.+.|++ .+.+..+ -+             .....++++.|.+.+.+ ..++...|+  ++.++.|...+.    ..+
T Consensus       255 ~la~~L~~-~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~  333 (378)
T TIGR01329       255 AIAMFLST-HPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSVNSLISMPCFM  333 (378)
T ss_pred             HHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCCCceeeCCCcc
Confidence            88888877 5654222 11             11134567888885434 567788887  677777765543    222


Q ss_pred             Chh----hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         327 EPS----YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       327 ~~~----~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+.    ...+..|+.+    +.||+|++.    |++|.+++.|++++++
T Consensus       334 ~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~  375 (378)
T TIGR01329       334 SHASIPAEVREERGLPE----DLVRLSVGI----EDVDDLISDLDIAFVT  375 (378)
T ss_pred             ccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHh
Confidence            211    2233555554    899999997    6778888888887764

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=1.4e-26  Score=213.00  Aligned_cols=279  Identities=16%  Similarity=0.125  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN  120 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~  120 (397)
                      ....+++++++++++.++++|++|+|+++++.+++. +.    ++++ |++.+|+|+.+...++..   |.+++.+|.+.
T Consensus        40 ~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~----~~~~-vv~~~P~y~~y~~~~~~~---G~~v~~vp~~~  110 (332)
T PRK06425         40 ISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YI----NVGN-IIIVEPNFNEYKGYAFTH---GIRISALPFNL  110 (332)
T ss_pred             cCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-Hh----CCCc-EEEeCCChHHHHHHHHHc---CCeEEEEeCCc
Confidence            357889999999999999999999999999999887 44    5654 666689999999888887   99999999875


Q ss_pred             CCCCCHHHHHHHhcCCceEEEEecccCcccccccH---HHHHHHHHhcCcEEEEecccccCcc----c-ccc-CcccccE
Q psy8850         121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI----D-INI-QNYKVDL  191 (397)
Q Consensus       121 ~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~----~-~~~-~~~~~d~  191 (397)
                      . .+|.+.+++   .+++++++++|+||||.+++.   ++|+++|+++|++||+|++|.-...    + ... ...+..+
T Consensus       111 ~-~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi  186 (332)
T PRK06425        111 I-NNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVI  186 (332)
T ss_pred             c-cCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEE
Confidence            3 345555543   478999999999999999994   6677888999999999999872211    1 011 1224568


Q ss_pred             EEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRL  269 (397)
Q Consensus       192 ~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l  269 (397)
                      ++.|++|.+|.+|  +|+++++++..+.+......         ...+......+ .... ....+++..+.++++++++
T Consensus       187 ~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~---------~~~~~~~~~~l-~~~~-~~~~~~~~~~~~~~~r~~l  255 (332)
T PRK06425        187 IGRSLTKILGIPSLRIGYIATDDYNMKISRKITEP---------WSVCDPAIDFI-RSID-LDYVAKHSLDIMENERSYL  255 (332)
T ss_pred             EEeecHHhcCCchhhheeeecCHHHHHHHHHcCCC---------CccCHHHHHHH-HHhh-hHHHHHHHHHHHHHHHHHH
Confidence            8899999777556  79999887665555432211         11111111111 1111 1223466788899999999


Q ss_pred             HHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         270 YNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       270 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      .+.|++ + ++.+..++.   +.++++.++  +..++.+.|.  ||.+.+|..|..                 .+.+++|
T Consensus       256 ~~~L~~-~-g~~~~~~~~---g~f~~~~~~--~~~~~~~~l~~~gi~v~~~~~f~~-----------------~~~~~iR  311 (332)
T PRK06425        256 INNLEA-M-GFRAAGDPS---ANFITFMIP--DAHDFYSYLLKNGILVRLLDDYEC-----------------LGEQYIR  311 (332)
T ss_pred             HHHHHH-C-CCEECCCCC---ceEEEEEcC--CHHHHHHHHHHCCeEEEECCCCCC-----------------CCCCEEE
Confidence            999998 5 565543322   445666665  5677777765  999999865532                 0137999


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      |+++   +.+++++++++|++++
T Consensus       312 is~~---~~~~~~~l~~al~~~~  331 (332)
T PRK06425        312 IAIR---RRSFNIKLVNALRNFL  331 (332)
T ss_pred             EEeC---CHHHHHHHHHHHHHHh
Confidence            9998   5899999999998764

>PLN02880 tyrosine decarboxylase

Probab=99.96  E-value=2.9e-26  Score=218.70  Aligned_cols=315  Identities=17%  Similarity=0.174  Sum_probs=224.7

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCC-------cEEEeCChhHHHHHHHHHhHhhhc-------cCCCEEEEcCCCCh
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPR-------EIIWTSGATESNNLAIKGAAHFYK-------KRGKHIITVQTEHK   97 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~i~~~~g~t~a~~~~l~~l~~~~~-------~~g~~vl~~~~~~~   97 (397)
                      .+..++.......++-+++++++|.+.+       ..++|+|||+|+..++.+......       .++-+|++++..|.
T Consensus       113 ~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~  192 (490)
T PLN02880        113 SWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHS  192 (490)
T ss_pred             ccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchH
Confidence            3444566778888999999999999864       488999999999988887654321       12346778999999


Q ss_pred             hhHHHHHHHhhCCc---EEEEeccCC--CCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850          98 SVLDSIRKLENDGF---RVTYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELCRSKG  166 (397)
Q Consensus        98 s~~~~~~~~~~~g~---~v~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g  166 (397)
                      |..+++..+   |+   +++.||++.  ++.+|+++|+++|.+      .+.+|+.+..++.+|.+.|+++|+++|++||
T Consensus       193 Sv~Kaa~~l---Glg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~  269 (490)
T PLN02880        193 ALQKACQIA---GIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNG  269 (490)
T ss_pred             HHHHHHHHc---CCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcC
Confidence            999999988   65   588899974  678999999999964      3678899999999999999999999999999


Q ss_pred             cEEEEecccccCcccc-----ccCcc-cccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC------------c
Q psy8850         167 VIFHCDAAQAVGKIDI-----NIQNY-KVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG------------H  227 (397)
Q Consensus       167 i~livD~a~~~~~~~~-----~~~~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~------------~  227 (397)
                      +++|||++|+.+....     .+..+ ++|+++.++|| ++.|.|+|++++++... .......+..            .
T Consensus       270 iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~-l~~~~~~~~~Yl~~~~~~~~~~~  348 (490)
T PLN02880        270 MWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNA-LIQSLSTNPEFLKNKASQANSVV  348 (490)
T ss_pred             CEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHH-HHHHHccCHHHhcCccccccCCC
Confidence            9999999999765422     23332 68999999999 67799999999985321 1111111000            0


Q ss_pred             ---cccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC--
Q psy8850         228 ---EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--  301 (397)
Q Consensus       228 ---~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  301 (397)
                         ......+ .. ...+.++.+++.+ .+++.++.++..++++++.+.|++ .+++.+..++.   ..++.|.++..  
T Consensus       349 ~~~~~~i~~~-rr-~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~-~~~~el~~~~~---~~iv~Fr~~~~~~  422 (490)
T PLN02880        349 DYKDWQIPLG-RR-FRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQ-DSRFEVVTPRI---FSLVCFRLVPPKN  422 (490)
T ss_pred             ChhccCcCCC-Cc-ccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecCCc---eEEEEEEEeCCCC
Confidence               0000011 11 1134454555543 557888888888999999999988 88999998755   55667776532  


Q ss_pred             Ch-------HHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHHHH
Q psy8850         302 EG-------ESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       302 ~~-------~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~  370 (397)
                      +.       .++.+.|.   .+.+....                    -.+..++|+++... +++++++.+++.|.+..
T Consensus       423 ~~~~~~~~n~~l~~~l~~~g~~~v~~t~--------------------~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~  482 (490)
T PLN02880        423 NEDNGNKLNHDLLDAVNSSGKIFISHTV--------------------LSGKYVLRFAVGAPLTEERHVTAAWKVLQDEA  482 (490)
T ss_pred             ChhhHHHHHHHHHHHHHhCCCEEEEEEE--------------------ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            11       23444443   23333221                    11236899998766 45699999999999998


Q ss_pred             HHHHhc
Q psy8850         371 KKLREL  376 (397)
Q Consensus       371 ~~~~~~  376 (397)
                      +++.++
T Consensus       483 ~~~~~~  488 (490)
T PLN02880        483 SKLLGK  488 (490)
T ss_pred             HHHHHh
Confidence            887554

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.96  E-value=6.4e-26  Score=214.84  Aligned_cols=322  Identities=18%  Similarity=0.162  Sum_probs=219.0

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      ++|.+++++.+++........  .....+...+...++++.++++++.+  ..++.++|++|+..++..+...  .+++.
T Consensus        61 ~~p~v~~a~~~~~~~~~~~~~--~s~~~~g~~~~~~~l~~~la~~~g~~--~~~~~~sG~~an~~ai~~l~~~--~~~~~  134 (407)
T PRK09064         61 QHPKVIEAMIEALDRCGAGAG--GTRNISGTNHYHVELERELADLHGKE--AALVFTSGYVSNDATLSTLAKL--IPDCV  134 (407)
T ss_pred             CCHHHHHHHHHHHHHcCCCCC--CcCcCccCHHHHHHHHHHHHHHhCCC--cEEEECcHHHHHHHHHHHHhCC--CCCCE
Confidence            378899999998876432111  11111223567888999999999964  4455566778888888876532  36677


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      |+.....|.+....+...   +.++..++.+     |++++++++.    +++++|++++++|++|.+.|+++|.++|++
T Consensus       135 i~~~~~~h~s~~~~~~~~---~~~~~~~~~~-----d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~  206 (407)
T PRK09064        135 IFSDELNHASMIEGIRRS---RCEKHIFRHN-----DVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADK  206 (407)
T ss_pred             EEEeCcchHHHHHHHHHc---CCcEEEECCC-----CHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHH
Confidence            777777787777666554   6676666543     7888888875    468899999999999999999999999999


Q ss_pred             cCcEEEEecccccCcc-c-----cccCc--ccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         165 KGVIFHCDAAQAVGKI-D-----INIQN--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       165 ~gi~livD~a~~~~~~-~-----~~~~~--~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      ||+++|+|++|+.|.. +     .....  ..+|+++.|++|.+|+.| |+++++++..+.+.....+    ..+..+ .
T Consensus       207 ~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~~~~~~~~~~~l~~~~~~----~~~t~~-~  280 (407)
T PRK09064        207 YNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG-GYIAGSAALVDAVRSYAPG----FIFTTS-L  280 (407)
T ss_pred             cCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC-ceEecCHHHHHHHHHhCcc----ccccCc-C
Confidence            9999999999985432 1     01111  146899999999777766 8888876554443322111    112222 3


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC---C
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK---D  312 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~---~  312 (397)
                      +....++..++++.+.+. ....+++.++++++.+.|++ + ++.+..+.    ..++.+.++. ....++.+.|.   |
T Consensus       281 ~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~iv~i~~~~~~~~~~l~~~L~~~~g  353 (407)
T PRK09064        281 PPAIAAAALASIRHLKES-NEERERHQERAAKLKAALDA-A-GIPVMPNE----SHIVPVMVGDPEKCKKASDMLLEEHG  353 (407)
T ss_pred             CHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCCCCCCC----CCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            334555556788876543 34567888999999999988 3 55544332    3444555543 23456776652   7


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      |.+.+.....                .+.+.+.+||+++.+++++|+++++++|+++++++
T Consensus       354 i~v~~~~~p~----------------~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~  398 (407)
T PRK09064        354 IYVQPINYPT----------------VPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL  398 (407)
T ss_pred             EEEeeECCCC----------------CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            8887642110                01123679999999999999999999999987654

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.9e-26  Score=212.45  Aligned_cols=303  Identities=19%  Similarity=0.130  Sum_probs=207.3

Q ss_pred             CCCCCC-CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           2 DYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         2 ~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      +++.+. ++|+.+.+++.+.+....   .. .|.     .....++|+++++++++++++|++|+|+++++.+++..+  
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~Y~-----~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~--   92 (337)
T PRK03967         24 DKNENPFDLPEELKEEIFEELKRVP---FN-RYP-----HITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF--   92 (337)
T ss_pred             cCCCCCCCCCHHHHHHHHHHhhcCc---cc-cCC-----CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh--
Confidence            334433 567899999988775311   01 121     124678999999999999999999999999998877653  


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                          +||+|+++.|.|+.+.......   |.+++.++.+.++.+|++++++.+ ++++++++++|+||||.+++.++|.+
T Consensus        93 ----~gd~V~v~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~  164 (337)
T PRK03967         93 ----EGKHIVITPPTFGMYSFYAKLN---GIPVIDVPLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILK  164 (337)
T ss_pred             ----CCCeEEEeCCChHHHHHHHHHc---CCeEEEeecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence                5799999999998776655555   999999999877789999999865 56889999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCcc-c-cc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCC
Q psy8850         161 LCRSKGVIFHCDAAQAVGKI-D-IN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGT  235 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~-~-~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (397)
                      +++ +++++|+|++|..... + .. .......+++.|++|.+|.+|  +|+++++++..+.+......         ..
T Consensus       165 i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~~---------~~  234 (337)
T PRK03967        165 VLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPP---------FS  234 (337)
T ss_pred             HHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcCC---------CC
Confidence            995 7999999999972211 1 11 111234578899999666445  79999887655554433211         12


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--Cc
Q psy8850         236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DI  313 (397)
Q Consensus       236 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i  313 (397)
                      .+.....++..+++.. +.+.+..+...+.++.+.+.|.+ .     ..+.+   +..+++.++      +.+.|.  ||
T Consensus       235 ~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~-~-----~~~~~---~~~~~~~~~------~~~~l~~~gi  298 (337)
T PRK03967        235 LNILTMKIVRLALDHY-DLIEERIDYIIKERERVRRELGE-Y-----AYPSD---ANFLLLKLD------AYDYLLENGI  298 (337)
T ss_pred             CCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHhcc-C-----cCCCC---CcEEEEhHH------HHHHHHHCCE
Confidence            3344444444555422 23444555666677778888766 2     11111   334444432      344443  88


Q ss_pred             EecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+.++...                    ..+++||+++   +.++.++++++|+++.+.
T Consensus       299 ~v~~~~~~--------------------~~~~~Ri~~~---~~~~~~~l~~~l~~~~~~  334 (337)
T PRK03967        299 VVRKLSGR--------------------LEGHIRVTVG---KREENDEFIKALKEIKEG  334 (337)
T ss_pred             EEEeCCCC--------------------CCCeEEEecC---CHHHHHHHHHHHHHHHHh
Confidence            88754211                    1378999997   578889999998876543

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.96  E-value=3e-26  Score=214.12  Aligned_cols=311  Identities=15%  Similarity=0.097  Sum_probs=213.7

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g  110 (397)
                      .+.+++...+...++++.++++.|.+  ..++++||++|+..++.++.    ++||+|+++.+.|+++...+.. +...|
T Consensus        55 ~~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssG~~Ai~~~l~all----~~GD~Vi~~~~~y~~~~~~~~~~~~~~G  128 (398)
T PRK08249         55 GHIYSRNTNPTVQAFEEKVRILEGAE--AATAFSTGMAAISNTLYTFL----KPGDRVVSIKDTYGGTNKIFTEFLPRMG  128 (398)
T ss_pred             CccccCCCChHHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHHHHhhCC
Confidence            34555666778899999999999976  46777888899999998887    7999999999999988766654 33448


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      ++++.++.     .|++++++++++++++|++++|+||+|.+.|+++|+++|+++|+++|+|++++.+..... ...++|
T Consensus       129 i~v~~vd~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~-l~~~~D  202 (398)
T PRK08249        129 VDVTLCET-----GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNP-LALGAD  202 (398)
T ss_pred             eEEEEcCC-----CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCc-hhhCCC
Confidence            88887764     489999999999999999999999999999999999999999999999999985543221 234799


Q ss_pred             EEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       191 ~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      +++.|++|++|+.|   .|+++.+++....+.....       ...+..+....+.+...++.    +..+.++..+++.
T Consensus       203 ivv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~-------~~g~~~s~~~a~l~l~~l~t----L~~R~~~~~~na~  271 (398)
T PRK08249        203 LVIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE-------INGATMDPMSAYLILRGMKT----LKLRVRQQQESAM  271 (398)
T ss_pred             EEeccCceecCCCCCceEEEEECCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhCcch----HHHHHHHHHHHHH
Confidence            99999999555433   3666665544444432211       11122333323322233433    3456677788888


Q ss_pred             HHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCC----CC
Q psy8850         268 RLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS----AS  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~----~~  325 (397)
                      .+.+.|++ .+.+..+.-|+              ...++++.|.+++.  ...++.+.|+  .+...-|...+.    ..
T Consensus       272 ~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~  350 (398)
T PRK08249        272 ALAKYLQT-HPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPART  350 (398)
T ss_pred             HHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCCCCCceeeCCcc
Confidence            89999988 77665332221              13467888888642  1345556665  344444543332    11


Q ss_pred             CCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         326 LEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       326 ~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +.+    ....+..|+.+    +.||+|++.    |+.|.+++.|.++++.++
T Consensus       351 ~~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~~~  395 (398)
T PRK08249        351 TSHVENTLEERAALGIPE----GLVRISVGI----EDTEDLIADLEQAFAHLE  395 (398)
T ss_pred             cccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHHhh
Confidence            211    11233455554    899999997    677777777777776543

>PRK05839 hypothetical protein; Provisional

Probab=99.96  E-value=4.5e-26  Score=213.02  Aligned_cols=313  Identities=13%  Similarity=-0.005  Sum_probs=203.0

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++++.+.+++.+......      .|..........+.+.+.+++.+|  +++++|++|+|+++|+..++.+++.  .++
T Consensus        37 ~~~~~~~~a~~~~~~~~~------~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~--~~~  108 (374)
T PRK05839         37 ETPKFIQDALKNNAHLLN------KYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLF--DKQ  108 (374)
T ss_pred             CCCHHHHHHHHHHhhccC------CCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhc--CCC
Confidence            456777777776543211      222112223344455555566657  5788999999999999988886641  036


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      |+.|+++.|+|+.+...+...   |.+++.++.+.+  +.+|+++.  .+ ++++++++++|+||||.+++   +++|++
T Consensus       109 gd~vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~d~~~~--~~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~~  182 (374)
T PRK05839        109 NPTIAYPNPFYQIYEGAAIAS---RAKVLLMPLTKENDFTPSLNEK--EL-QEVDLVILNSPNNPTGRTLSLEELIEWVK  182 (374)
T ss_pred             CCEEEECCCCchhhHHHHHhc---CCEEEEeecccccCCcCCcchh--hh-ccccEEEEeCCCCCcCcccCHHHHHHHHH
Confidence            899999999999999888776   999999999743  34444332  23 46899999999999999999   467888


Q ss_pred             HHHhcCcEEEEecccccCcc--c-ccc---------CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCC
Q psy8850         161 LCRSKGVIFHCDAAQAVGKI--D-INI---------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~--~-~~~---------~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      +|+++|++||+|++|+....  + ..+         ...+..+++.|++|.+|.+|  +|+++.+++....+......  
T Consensus       183 ~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~~~~~--  260 (374)
T PRK05839        183 LALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAYRTY--  260 (374)
T ss_pred             HHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHHHHHHhh--
Confidence            89999999999999873210  1 111         11245688999999655445  78888876555544332210  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL  306 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (397)
                          ...+. +.....++..++.. .+.++++++++.++++.+.+.|..     .  .+.+   +.++++.++  +..++
T Consensus       261 ----~~~~~-~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-----~--~p~g---g~fi~~~~~--~~~~~  322 (374)
T PRK05839        261 ----LGCAS-PLPLQKAAAVAWLD-DEHAEFFRNIYAKNLKLAREILGI-----T--IPPA---TFYVWLPVD--NDEEF  322 (374)
T ss_pred             ----cCCCC-ChHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCC-----C--CCCe---eEEEEEeCC--ChHHH
Confidence                01112 22223333233321 334566777777777777665421     1  1211   445555554  35667


Q ss_pred             HHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       307 ~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ...+.   ||.+.+|..|..               .....+++||+++.  +.+++++++++|.++++
T Consensus       323 ~~~l~~~~gi~v~pg~~f~~---------------~~~~~~~iRis~~~--~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        323 TKKLYQNEGIKVLPGSFLGR---------------NGIGKGYVRIALVY--DTPKLEKALEIIKTYLE  373 (374)
T ss_pred             HHHHHHHCCEEEeCchhhCC---------------CCCCCCeEEEEecC--CHHHHHHHHHHHHHHhh
Confidence            66662   899999865432               01123899999974  69999999999988764

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.95  E-value=9.7e-27  Score=216.69  Aligned_cols=306  Identities=18%  Similarity=0.163  Sum_probs=214.0

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~  111 (397)
                      +.+++...+...++++.+++++|.+  ..++++||++|+..++.++.    ++||+|+++.+.|+++...+... ...|.
T Consensus        32 ~~y~r~~~p~~~~le~~la~l~g~~--~a~~~~sG~~Ai~~~l~~l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~  105 (369)
T cd00614          32 YIYSRIGNPTVDALEKKLAALEGGE--AALAFSSGMAAISTVLLALL----KAGDHVVASDDLYGGTYRLFERLLPKLGI  105 (369)
T ss_pred             ceeECCCChhHHHHHHHHHHHHCCC--CEEEEcCHHHHHHHHHHHHc----CCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence            4445555678899999999999975  67788999999999999887    79999999999999988766543 34488


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++..++.+     |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++++.+... ....+++|+
T Consensus       106 ~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~-~~~~~g~Di  179 (369)
T cd00614         106 EVTFVDPD-----DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQ-RPLELGADI  179 (369)
T ss_pred             EEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcC-ChhhhCCcE
Confidence            99888865     689999999989999999999999999999999999999999999999999876542 222447899


Q ss_pred             EEeccccccCCCC---ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHKIYGPKG---IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K~~g~~g---~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      ++.|++|.+++.|   .|+++.++ +..+.+......       ..+..+....+.+...++    .+..+.++..+++.
T Consensus       180 vv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-------~g~~~~p~~a~~~l~~l~----tl~~r~~~~~~na~  248 (369)
T cd00614         180 VVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLA-------LGTILSPFDAWLLLRGLK----TLPLRMERHSENAL  248 (369)
T ss_pred             EEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHh-------hCCCCCHHHHHHHHcCCC----CHHHHHHHHHHHHH
Confidence            9999999544333   68888876 444444332211       011222222222222332    34556778888999


Q ss_pred             HHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCC----CC
Q psy8850         268 RLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS----AS  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~----~~  325 (397)
                      ++.+.|++ .+.+..+..+.              ...++++.|.+++.  ...++.+.|+  .+...-|...+.    ..
T Consensus       249 ~la~~L~~-~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~  327 (369)
T cd00614         249 KVAEFLEK-HPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESLVEHPAS  327 (369)
T ss_pred             HHHHHHHc-CCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCceeeeCCcc
Confidence            99999998 77654332221              23467888888631  1344555555  334444444332    11


Q ss_pred             CChh----hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         326 LEPS----YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       326 ~~~~----~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ..+.    ...+..|+.+    +.||+|++.    |++|.+++.|.+++
T Consensus       328 ~~~~~~~~~~~~~~g~~~----~liR~svGl----E~~~dl~~dl~~al  368 (369)
T cd00614         328 MTHSQLPPEERAAAGITP----GLVRLSVGI----EDVEDLIADLEQAL  368 (369)
T ss_pred             cccccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHhh
Confidence            1111    1233455554    899999997    67888888887764

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.95  E-value=2.2e-26  Score=217.32  Aligned_cols=320  Identities=15%  Similarity=0.102  Sum_probs=211.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh---CCCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI---YADPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++++.+.+++.+.+.+......    ..+|.......++++++++++   ++++++|++|+|+++++..+. .+.    .
T Consensus        46 ~~~~~v~~~~~~~~~~~~~~~~----~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l~-~l~----~  116 (402)
T TIGR03542        46 PLPASVIEAFHNAVDELASEET----FRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRLQ-SLF----G  116 (402)
T ss_pred             CCCHHHHHHHHHHHhccccccc----ccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHHH-Hhc----C
Confidence            4578899999988865321111    011222345678888898876   678889999999999998764 444    6


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCc-----------EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccc
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGF-----------RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~-----------~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~  153 (397)
                      +|++|++.+|+|+.+...++..   |.           +++.++.++.+.++++ +++  .+++++|++++|+||||.++
T Consensus       117 ~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~--~~~~~~i~l~nP~NPTG~~~  190 (402)
T TIGR03542       117 SDNTVAVQDPVYPAYVDSNVMA---GRAGVLDDDGRYSKITYLPCTKENNFIPD-LPE--EPKIDIIYLCSPNNPTGTVL  190 (402)
T ss_pred             CCCEEEEeCCCCcchHHHHHHc---CCccccccccccceEEEeecchhhCCCCC-ccc--cCCceEEEEeCCCCCCCccC
Confidence            8899999999999998888777   77           8888888643223332 211  25789999999999999999


Q ss_pred             c---HHHHHHHHHhcCcEEEEecccccCc----cccccCcc----cccEEEeccccccCCCC--ceEEEEecCCCCcc--
Q psy8850         154 P---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRI--  218 (397)
Q Consensus       154 ~---l~~i~~l~~~~gi~livD~a~~~~~----~~~~~~~~----~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~--  218 (397)
                      +   +++|+++|++||++||+|++|....    .+..+..+    +..+++.|++|.+|.+|  +|++++++++....  
T Consensus       191 s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~  270 (402)
T TIGR03542       191 TKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGH  270 (402)
T ss_pred             CHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHHHhhcchh
Confidence            9   6788999999999999999987321    11111111    23577899999776545  79988886654111  


Q ss_pred             --ccccccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEE
Q psy8850         219 --EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN  295 (397)
Q Consensus       219 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  295 (397)
                        .......   ......+.+.....+...+++. ....+.+..+.+.++++.+.+.|++ . ++.+..+..   +..++
T Consensus       271 ~~~~~~~~~---~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~---~~f~~  342 (402)
T TIGR03542       271 SVIQDWERR---QCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA-A-GFKVYGGEH---APYLW  342 (402)
T ss_pred             hHHHHHHHH---hhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh-c-CceecCCCc---eeEEE
Confidence              1010000   0000112232332322233321 1123455667788888999999988 4 555443322   45777


Q ss_pred             EEecC-CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         296 ISFNF-IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       296 ~~~~~-~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +.++. .++.++...+.   +|.+.+|..|..                 ...+++||++..  +++++++++++|+++
T Consensus       343 v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRis~~~--~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       343 VKTPEGISSWDFFDFLLYQYHVVGTPGSGFGP-----------------SGEGFVRFSAFG--KRENIVEACERIKEA  401 (402)
T ss_pred             EECCCCCCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEecC--CHHHHHHHHHHHHhh
Confidence            88864 35667776653   899999865532                 113789999754  789999999999865

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.95  E-value=6.8e-26  Score=213.47  Aligned_cols=320  Identities=16%  Similarity=0.135  Sum_probs=220.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++++.+.+++.+++.... .... .+.......+...++++.++++++.+ +.+++++| ++++..++.++.    ++||
T Consensus        47 ~~~~~~~~a~~~~~~~~~-~~~~-~~~~~~g~~~l~~~l~~~l~~~~g~~-~~i~~~sG-~~a~~~a~~~~~----~~gd  118 (385)
T TIGR01825        47 ADHPRLKEAAAQAIQQYG-VGAG-AVRTIAGTLRLHEELEEKLAKFKKTE-AALVFQSG-FNTNQGVLSALL----RKGD  118 (385)
T ss_pred             CCCHHHHHHHHHHHHHcC-CCCC-ccCcccCCcHHHHHHHHHHHHHhCCC-cEEEECcH-HHHHHHHHHHhC----CCCC
Confidence            378899999999886532 1111 12222233567888999999999975 35666555 678888888776    7899


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCR  163 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~~  163 (397)
                      +|++..+.|+++...+...   |.++..++     .+|++++++.+.+    ++++|++++++|++|.+.|+++|.++|+
T Consensus       119 ~vi~~~~~~~~~~~~~~~~---g~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~  190 (385)
T TIGR01825       119 IVLSDELNHASIIDGLRLT---KATKKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAE  190 (385)
T ss_pred             EEEEEccccHHHHHHHHhc---CCceEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHH
Confidence            9999999999998776654   77766654     3688888887753    6889999999999999999999999999


Q ss_pred             hcCcEEEEecccccCccc---------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCC
Q psy8850         164 SKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       164 ~~gi~livD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
                      +||+++|+|++|+.+...         ++.. .+.|+++.|++|.+|..| |+++.+++..+.+.......     ...+
T Consensus       191 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g-G~~~~~~~~~~~~~~~~~~~-----~~~~  263 (385)
T TIGR01825       191 RYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG-GYAAGHKELIEYLKNRARPF-----LFST  263 (385)
T ss_pred             HhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC-CEEecCHHHHHHHHHhCccc-----cccC
Confidence            999999999999755322         2222 467899999999666655 88887765544443221100     0112


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC--
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK--  311 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--  311 (397)
                      ..+...++++.++++.+.+. .+..+++.++++++.+.|++ + ++.+..+..    .++.+.++. .+..++...|.  
T Consensus       264 ~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~~  336 (385)
T TIGR01825       264 AQPPAVVAALAAAVDELQRS-PELMERLWDNTRFFKAGLGK-L-GYDTGGSET----PITPVVIGDEKAAQEFSRRLFDE  336 (385)
T ss_pred             CCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCCCCCCCC----CEEEEEECCHHHHHHHHHHHHHC
Confidence            23445566666777765432 34667778889999999988 4 665554322    233444432 13456766664  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ||.+..+.+...                ..+...||++++..++++++++++++|+++++++
T Consensus       337 gi~v~~~~~~~~----------------~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~  382 (385)
T TIGR01825       337 GIFAQSIVFPTV----------------PRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL  382 (385)
T ss_pred             CcEEcccCCCCC----------------CCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence            777753321110                1123689999998899999999999999988653

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PLN02590 probable tyrosine decarboxylase

Probab=99.95  E-value=1.5e-25  Score=213.67  Aligned_cols=336  Identities=13%  Similarity=0.141  Sum_probs=232.5

Q ss_pred             HHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-------cEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850          13 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-------EIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus        13 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      ....+.+.+.... |.....+..++...+...++.+++++++|.+.+       ..++++|||+|+..++.+......  
T Consensus       143 ~~~~lgd~l~sa~-n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~  221 (539)
T PLN02590        143 VAGFLGEMLNAGL-SVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKK  221 (539)
T ss_pred             HHHHHHHHHHHhc-ccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhh
Confidence            3344444444433 222214555667778889999999999999863       488999999999888877554221  


Q ss_pred             -----cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcC------CceEEEEecccCccc
Q psy8850          84 -----KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS------DTILVSVMLVNNEIG  150 (397)
Q Consensus        84 -----~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG  150 (397)
                           .++-.|++++..|.|..+++..++-...+++.||++  .++.||+++|+++|.+      .|.+|+.+..++.+|
T Consensus       222 ~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tG  301 (539)
T PLN02590        222 VGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSA  301 (539)
T ss_pred             hcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCc
Confidence                 123467789999999999998882212268889988  4578999999999965      367899999999999


Q ss_pred             ccccHHHHHHHHHhcCcEEEEecccccCcccc-cc----Cc-ccccEEEecccc-ccCCCCceEEEEecCCC--Ccc---
Q psy8850         151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDI-NI----QN-YKVDLMSFSAHK-IYGPKGIGALYIRRNPR--TRI---  218 (397)
Q Consensus       151 ~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~-~~----~~-~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~--~~~---  218 (397)
                      .+.|+++|+++|++||+|+|||+|++...... ..    .. -.+|+++.++|| ++.|.++|+++++++..  ..+   
T Consensus       302 aiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~  381 (539)
T PLN02590        302 AVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTN  381 (539)
T ss_pred             ccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcC
Confidence            99999999999999999999999999654321 11    11 158999999999 67788999999996421  111   


Q ss_pred             ccccccC---------CccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC
Q psy8850         219 EAQIHGG---------GHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN  288 (397)
Q Consensus       219 ~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  288 (397)
                      ..++...         ........+ .. ...+.++.+++.+ .+++.++.++..++++++.+.|++ .+++.++.++. 
T Consensus       382 ~~YL~~~~~~~~~~~d~~d~~i~ls-Rr-~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~-~~~fel~~~~~-  457 (539)
T PLN02590        382 PEYLEFKVSKKDTVVNYKDWQISLS-RR-FRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQ-DPSFEVVTTRY-  457 (539)
T ss_pred             HHHhCCcccccccCCCccccCCCCC-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCc-
Confidence            1111100         000111111 22 3456666777765 568999999999999999999999 89999998754 


Q ss_pred             CCCceEEEEecCC--C---hH----HHHHHhC--C-cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCC
Q psy8850         289 RIPHNLNISFNFI--E---GE----SLLMAIK--D-IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTT  355 (397)
Q Consensus       289 ~~~~~~~~~~~~~--~---~~----~~~~~l~--~-i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~  355 (397)
                        ..+++|++...  +   ..    ++.+.+.  | +.+.+..                    -.+..+||+++. ..++
T Consensus       458 --l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~--------------------~~g~~~lR~~i~n~~T~  515 (539)
T PLN02590        458 --FSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTA--------------------LSGKFVLRFAVGAPLTE  515 (539)
T ss_pred             --eEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeE--------------------ECCEEEEEEEecCCCCC
Confidence              45666665421  1   12    3333333  2 2222211                    112368999986 4478


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy8850         356 EKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +++|+.+++.|.+...++.+
T Consensus       516 ~~dv~~~~~~i~~~a~~~~~  535 (539)
T PLN02590        516 EKHVTEAWQIIQKHASKFTR  535 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            99999999999988766543

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.95  E-value=4.1e-26  Score=212.43  Aligned_cols=308  Identities=19%  Similarity=0.161  Sum_probs=212.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN  120 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~  120 (397)
                      +...++++.+++++|.+  ++++++|||+|+..++.++..   ++|++|+++.++|.++..++...   |.+++.++.++
T Consensus        18 ~~~~~~~~~la~~~~~~--~~~~~~sgt~al~~~l~~l~~---~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~   89 (352)
T cd00616          18 PKVREFEKAFAEYLGVK--YAVAVSSGTAALHLALRALGI---GPGDEVIVPSFTFVATANAILLL---GATPVFVDIDP   89 (352)
T ss_pred             HHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcCC---CCCCEEEeCCcchHHHHHHHHHc---CCeEEEEecCC
Confidence            36788999999999975  688899999999999998732   68899999999999998877766   99999999986


Q ss_pred             -CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcccccc-CcccccEEEeccc-
Q psy8850         121 -NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI-QNYKVDLMSFSAH-  197 (397)
Q Consensus       121 -~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~-~~~~~d~~~~s~~-  197 (397)
                       ++.+|++++++++++++++|++++   ++|...|+++|.++|+++|+++|+|++|+.|....+. .....|+.++|++ 
T Consensus        90 ~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~  166 (352)
T cd00616          90 DTYNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHP  166 (352)
T ss_pred             CcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCC
Confidence             788999999999988999998875   5899999999999999999999999999988654321 1112578888866 


Q ss_pred             -cccCCCCceEEEEec-CCCCccccccccCCccc---------cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         198 -KIYGPKGIGALYIRR-NPRTRIEAQIHGGGHEY---------GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       198 -K~~g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                       |+++....|+++.++ +..+.++.....+....         ++..+.++....+++    . ..+.++++.++.+++.
T Consensus       167 ~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~----~-~l~~~~~~~~~~~~~~  241 (352)
T cd00616         167 TKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGL----A-QLEKLDEIIARRREIA  241 (352)
T ss_pred             CCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHH----H-HHHhhHHHHHHHHHHH
Confidence             955432347777764 34443433222211100         011112222222222    1 1234577788889999


Q ss_pred             HHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEec---CCChHHHHHHhC--CcEecccCccCCCCCChhhHH----Hh-
Q psy8850         267 KRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN---FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVL----RA-  334 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~----~~-  334 (397)
                      +++++.|.+ ++++.+..++..  ..++++.+.++   +.+..++.+.|.  ||.+  +.+|.+....+....    .. 
T Consensus       242 ~~~~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~--~~~~~~~~~~~~~~~~~~~~~~  318 (352)
T cd00616         242 ERYKELLAD-LPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIET--RVHYPPLHHQPPYKKLLGYPPG  318 (352)
T ss_pred             HHHHHHhcC-CCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCe--eeecCccccCHhhhhccCCCcC
Confidence            999999998 888887755331  23456677766   456788888887  6643  344444211110000    00 


Q ss_pred             -hCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         335 -LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       335 -~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                       .........+.||+++..++|++||++++++|+
T Consensus       319 ~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         319 DLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             CChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence             000011224789999999999999999999874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.95  E-value=2.8e-26  Score=212.36  Aligned_cols=308  Identities=14%  Similarity=0.101  Sum_probs=209.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHH-HHhhCCcEEE
Q psy8850          36 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVT  114 (397)
Q Consensus        36 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~-~~~~~g~~v~  114 (397)
                      ++...+....+++.++++.+..  ++++++||++|+.+++.+++    ++||+|+++++.|+++...+. .+.+.|.++.
T Consensus        56 ~r~~npt~~~Le~~iA~le~~~--~~~~~~sG~~Ai~~~l~all----~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~  129 (394)
T PRK09028         56 GRRGTPTHFAFQAAIVELEGGA--GTALYPSGAAAISNALLSFL----KAGDHLLMVDSCYEPTRDLCDKILKGFGIETT  129 (394)
T ss_pred             cCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEECCCcHHHHHHHHHhhhhcceEEE
Confidence            3333345678999999998765  68999999999999999887    899999999999988876554 3344588888


Q ss_pred             EeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEe
Q psy8850         115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF  194 (397)
Q Consensus       115 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~  194 (397)
                      .++.+     +.+.++++++++|++|++++|+||+|.+.|+++|+++||++|+++++|++|+.+.. .+...+++|+++.
T Consensus       130 ~v~~~-----~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-~~Pl~~GaDivv~  203 (394)
T PRK09028        130 YYDPM-----IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-SRPFEMGVDISIQ  203 (394)
T ss_pred             EECCC-----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-CCccccCceEEEE
Confidence            77644     56889999999999999999999999999999999999999999999999997743 2334569999999


Q ss_pred             cccc-ccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         195 SAHK-IYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN  271 (397)
Q Consensus       195 s~~K-~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~  271 (397)
                      |.+| +.|...  .|+++.+++....+.....       ......+....+.+...++    .+.-+.++..+++..+.+
T Consensus       204 S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~-------~~G~~~~p~~a~l~~rgl~----TL~lR~~~~~~na~~la~  272 (394)
T PRK09028        204 AATKYIVGHSDVMLGTATANEKHWDQLREHSY-------LMGQCTSPDDVYLAMRGLR----TLGVRLAQHEKNALKVAN  272 (394)
T ss_pred             eCCeEecCCCCEEEEEEECCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHcccC----cHHHHHHHHHHHHHHHHH
Confidence            9999 555533  4655544433222221111       1112333333333323333    255677888888999999


Q ss_pred             HHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCC---hHHHHHHhC--CcEecccCccCCC----CCCh
Q psy8850         272 GLMESIEEIYINGDMN--------------NRIPHNLNISFNFIE---GESLLMAIK--DIAVSSGSACTSA----SLEP  328 (397)
Q Consensus       272 ~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---~~~~~~~l~--~i~~~~g~~~~~~----~~~~  328 (397)
                      .|++ .|.+.-+.-|+              ...++++.|.+++.+   ..++.+.|+  .+..+-|...+..    ++..
T Consensus       273 ~L~~-~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~~  351 (394)
T PRK09028        273 WLAT-RPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLILGVFGINK  351 (394)
T ss_pred             HHhc-CCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccCCCcceeECCCCcCc
Confidence            9988 77654332111              134678888886322   345666666  4455555444321    1111


Q ss_pred             hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         329 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       329 ~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ....+..|+.    ++.||||++.    |+.|.+++.|.++++..+.
T Consensus       352 ~~~~~~~~~~----~~liR~svGl----Ed~~dLi~Dl~~Al~~~~~  390 (394)
T PRK09028        352 LRTATNWDFS----KPLIRLHIGL----EDVDDLIADLEAGFERYNA  390 (394)
T ss_pred             cCchhhhcCC----CCeEEEEeCc----CCHHHHHHHHHHHHHHHHH
Confidence            1112223333    3799999997    5677777777777776654

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.95  E-value=3.4e-26  Score=214.17  Aligned_cols=308  Identities=15%  Similarity=0.133  Sum_probs=209.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEE
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRV  113 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v  113 (397)
                      +++...+...++++.+++++|++.  ..++++|+.|+..++.++.    ++||+|+++.+.|+++...+... ...|.++
T Consensus        59 y~r~~~p~~~~Le~~lA~l~G~~~--~~~~~sG~~Ai~~~l~~~l----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v  132 (398)
T PRK07504         59 YSRYSNPTVDMFEKRMCALEGAED--ARATASGMAAVTAAILCQV----KAGDHVVAARALFGSCRYVVETLLPRYGIES  132 (398)
T ss_pred             eecCCCchHHHHHHHHHHHhCCCe--eeEecCHHHHHHHHHHHHh----CCCCEEEEcCCchhHHHHHHHHHHhhcCeEE
Confidence            333344567899999999999984  3457788899988787766    79999999999999887766543 3348888


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS  193 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~  193 (397)
                      +.++     .+|+++++++++++|++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+... ....+++|+++
T Consensus       133 ~~vd-----~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~-~~~~~gaDivv  206 (398)
T PRK07504        133 TLVD-----GLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQ-KPLELGAHIVV  206 (398)
T ss_pred             EEEC-----CCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccC-CchhhCCCEEE
Confidence            8886     26899999999999999999999999999999999999999999999999999866543 22345899999


Q ss_pred             eccccccCCCC--c-eEEEEecCCCCc-cccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         194 FSAHKIYGPKG--I-GALYIRRNPRTR-IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRL  269 (397)
Q Consensus       194 ~s~~K~~g~~g--~-g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l  269 (397)
                      +|++|++++.|  . |+++.+++.... +......       ....++....+.....++.    +..+.++..+++.++
T Consensus       207 ~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~-------~g~~~s~~~A~~~l~~L~t----l~~R~~~~~~na~~l  275 (398)
T PRK07504        207 YSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRH-------TGPSLSPFNAWTLLKGLET----LPVRVRQQTESAAAI  275 (398)
T ss_pred             eeccccccCCccceEEEEEeCcHHHHHHHHHHHHH-------hCCCCCHHHHHHHHhccch----HHHHHHHHHHHHHHH
Confidence            99999554333  3 566666543322 2211111       0112222233333234443    455666777888888


Q ss_pred             HHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCC----CCCC
Q psy8850         270 YNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS----ASLE  327 (397)
Q Consensus       270 ~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~----~~~~  327 (397)
                      .+.|++ .|++..+.-|+              ...++++.|.+++.  ....+.+.|+  .+...-|...+.    ..+.
T Consensus       276 a~~L~~-~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~  354 (398)
T PRK07504        276 ADFLAG-HPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPATTT  354 (398)
T ss_pred             HHHHHc-CCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCeeeeCCCCCC
Confidence            889988 77654221111              12367888888632  1345666665  444455543332    2222


Q ss_pred             h----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         328 P----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       328 ~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +    ....+..|+.+    +.||||++.    |+.|.+++.|++++++.+
T Consensus       355 ~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~~~  397 (398)
T PRK07504        355 HKNLSPEARAELGISE----GFLRLSAGL----EDTDDLIEDLAAALKKVR  397 (398)
T ss_pred             cccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhhh
Confidence            1    23345666664    899999997    567777777777776543

>PLN02271 serine hydroxymethyltransferase

Probab=99.95  E-value=1.3e-25  Score=209.57  Aligned_cols=342  Identities=14%  Similarity=0.182  Sum_probs=245.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC----CcEEEeCChhHHHHHHHHH
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADP----REIIWTSGATESNNLAIKG   77 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~i~~~~g~t~a~~~~l~~   77 (397)
                      +|...+++.|++++...+...|  +.|....|.......++...+.+...++|+++.    .+|.. .||+.|+.+++.+
T Consensus       155 ASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp-~SGs~AN~aV~~A  233 (586)
T PLN02271        155 ASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQP-YSCTSANFAVYTG  233 (586)
T ss_pred             cccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceee-ccHHHHHHHHHHH
Confidence            4566788999999998887755  566653333333333455558889999999876    45554 3888999999999


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHH------HhhCCcEEEEec--cC-CCCCCCHHHHHH-HhcCCceEEEEecccC
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRK------LENDGFRVTYLK--PK-NNGLITLSQLEE-KICSDTILVSVMLVNN  147 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~------~~~~g~~v~~v~--~~-~~~~~d~~~l~~-~i~~~~~~v~~~~~~~  147 (397)
                      ++    +|||+|+..+.+|+++......      ....|..+..++  ++ ++|.+|.+++++ +...+|++|++.+..+
T Consensus       234 Ll----~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Say  309 (586)
T PLN02271        234 LL----LPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSY  309 (586)
T ss_pred             hc----CCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhc
Confidence            98    8999999999999888776421      122255555554  54 578999999998 6677999999988887


Q ss_pred             cccccccHHHHHHHHHhcCcEEEEecccccCccccccC---cccccEEEecccc-ccCCCCceEEEEecCCCCccccccc
Q psy8850         148 EIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ---NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIH  223 (397)
Q Consensus       148 ~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~---~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~  223 (397)
                      +  ...|++++.++|+++|+++++|.+|..|.+..+..   ..++|++++|+|| +.||.| |+++++++..........
T Consensus       310 p--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~~~g~~g  386 (586)
T PLN02271        310 P--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPKLRKQGMLL  386 (586)
T ss_pred             c--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEecccccccccCCcc
Confidence            7  77899999999999999999999999888754421   2268999999999 889998 888887653322211111


Q ss_pred             cCC---------------ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC
Q psy8850         224 GGG---------------HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMN  287 (397)
Q Consensus       224 ~~~---------------~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  287 (397)
                      ++.               ...++..|+.+ ..++++..++++... .+.++.+++..+++.|.+.|.+  .|+.++..  
T Consensus       387 s~s~~~~~~d~~~kI~~aVfPglqgGphn-~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~--~G~~vv~g--  461 (586)
T PLN02271        387 SHGDDNSHYDFEEKINFAVFPSLQGGPHN-NHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLR--RKCRLVTG--  461 (586)
T ss_pred             ccccccccHHHHHHhhcccCCccccChhH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH--CCCeEeeC--
Confidence            100               01233444444 559999999997753 5789999999999999999998  79888864  


Q ss_pred             CCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHH
Q psy8850         288 NRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEI  359 (397)
Q Consensus       288 ~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i  359 (397)
                      .+..+++.+.+..  .+.......|.  +|.+..-....              .......+.|||+....    ..++|+
T Consensus       462 gTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~--------------d~~~~~psGiRiGT~alT~rG~~e~d~  527 (586)
T PLN02271        462 GTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFG--------------DNGTISPGGVRIGTPAMTSRGCLESDF  527 (586)
T ss_pred             CCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCC--------------CCCCCCCCcccccCHHHHhcCCCcHHH
Confidence            2336777777753  35666666665  66665332111              11222347899986544    458999


Q ss_pred             HHHHHHHHHHHHH
Q psy8850         360 DFTIKLLKMKVKK  372 (397)
Q Consensus       360 ~~~~~~l~~~~~~  372 (397)
                      +++.+.|.+++..
T Consensus       528 ~~iA~~i~~~~~~  540 (586)
T PLN02271        528 ETIADFLLRAAQI  540 (586)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998873

>PLN02672 methionine S-methyltransferase

Probab=99.95  E-value=1.4e-25  Score=225.93  Aligned_cols=315  Identities=12%  Similarity=0.056  Sum_probs=222.4

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC---cEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR---EIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      .++|+.+++++.+.+...       .+.  +...+....+++++++.+|++.+   +|++++|+++++..++.++.    
T Consensus       709 ~ppPp~V~eAi~eal~~~-------~~s--~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl----  775 (1082)
T PLN02672        709 LPVPSAVKASIFESFVRQ-------NIS--ESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCV----  775 (1082)
T ss_pred             CCCCHHHHHHHHHHHhhc-------CCC--CCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHc----
Confidence            367899999998877541       111  11234568899999999998654   79999999999999999888    


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcC-CceEEEEeccc-Cccccccc---HH
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS-DTILVSVMLVN-NEIGVIQP---IL  156 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~-~~~~v~~~~~~-~~tG~~~~---l~  156 (397)
                      ++||+|+++.|+|+.+...++..   |.+++.+|+++  ++.+|++++++++++ +.+++++++|+ ||||.+++   ++
T Consensus       776 ~pGD~VLVp~PtY~~Y~~~a~~~---Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe  852 (1082)
T PLN02672        776 QEGGTLCFPAGSNGTYVSAAKFL---KANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIE  852 (1082)
T ss_pred             CCCCEEEEeCCChHHHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHH
Confidence            89999999999999999998887   99999999963  467889999999976 45688888886 99999998   56


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---c---cccC----cc------cccEEEeccccccCCCC--ceEEEEecC-CCCc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---D---INIQ----NY------KVDLMSFSAHKIYGPKG--IGALYIRRN-PRTR  217 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~---~~~~----~~------~~d~~~~s~~K~~g~~g--~g~~~~~~~-~~~~  217 (397)
                      +|+++|++||++||+|++|+.-..   +   .++.    ..      ...+++.|++|.++.+|  +|+++++++ ....
T Consensus       853 ~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~  932 (1082)
T PLN02672        853 EILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDA  932 (1082)
T ss_pred             HHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHH
Confidence            788889999999999999971111   1   0110    01      13467889999555445  799988644 4444


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI  290 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  290 (397)
                      +.... .        ...+......+..+++..       +.+.+.+.++.++++++++.+.|++ . ++.+..+.+   
T Consensus       933 l~~~~-~--------~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~-~-Gi~v~~PeG---  998 (1082)
T PLN02672        933 FHSAP-G--------LSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEA-C-GWDVLEPQG---  998 (1082)
T ss_pred             HHHhh-h--------hcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeEecCCc---
Confidence            43321 0        011111122222233321       2335667788899999999999998 4 666665433   


Q ss_pred             CceEEEEec------------------CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850         291 PHNLNISFN------------------FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT  349 (397)
Q Consensus       291 ~~~~~~~~~------------------~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (397)
                      +.++++.++                  +.++.++.+.|.   ||.+.+|..|..                   .+++||+
T Consensus       999 GFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~-------------------~g~~RIs 1059 (1082)
T PLN02672        999 GISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI-------------------PGYCRFS 1059 (1082)
T ss_pred             EEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC-------------------CCeEEEE
Confidence            334444321                  134567777764   899999864432                   3799999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         350 IGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ++.  +++++++++++|+++.+.
T Consensus      1060 fa~--~~e~LeeALerL~kf~~~ 1080 (1082)
T PLN02672       1060 FAL--EDSEFDRALKAIARFKEL 1080 (1082)
T ss_pred             ecC--CHHHHHHHHHHHHHHHHh
Confidence            985  789999999999986653

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.95  E-value=3.9e-26  Score=214.08  Aligned_cols=309  Identities=15%  Similarity=0.168  Sum_probs=213.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV  113 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v  113 (397)
                      +++...+...++++.|+++.+.+  ++++++||+.|+..++.++.    ++||+|+++.+.|+++...... +...|+++
T Consensus        58 Y~r~~~p~~~~Le~~iA~~~g~~--~~l~~~sG~~Ai~~al~~ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v  131 (400)
T PRK06234         58 YSRLGNPTSTEVENKLALLEGGE--AAVVAASGMGAISSSLWSAL----KAGDHVVASDTLYGCTFALLNHGLTRYGVEV  131 (400)
T ss_pred             ccCCCCccHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHh----CCCCEEEEecCccchHHHHHHHHHhhCCeEE
Confidence            34344567889999999999975  57889999999999888887    7999999999999988776644 33349999


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc--CcEEEEecccccCccccccCcccccE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK--GVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~--gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      +.++.+     |++++++++++++++|++++|+||+|.+.|+++|.++|+++  |+++++|++|+.+.....+ ..++|+
T Consensus       132 ~~vd~~-----d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l-~~g~Di  205 (400)
T PRK06234        132 TFVDTS-----NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL-QLGADV  205 (400)
T ss_pred             EEECCC-----CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch-hhCCcE
Confidence            999865     79999999999999999999999999999999999999997  9999999999866543222 347899


Q ss_pred             EEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR  268 (397)
Q Consensus       192 ~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~  268 (397)
                      ++.|++|.+++.|   .|+++++++..+.+......     .......+....+.....++    .++.+.++..+++.+
T Consensus       206 vv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~-----~~~g~~l~p~~a~l~~~~l~----tl~~r~~~~~~na~~  276 (400)
T PRK06234        206 VVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIK-----DMTGSVIGPFEAFLIIRGMK----TLQIRMEKHCKNAMK  276 (400)
T ss_pred             EEeeccccccCCCCceeEEEEecHHHHHHHHHHHHH-----HhcCCCCCHHHHHHHHhccC----cHHHHHHHHHHHHHH
Confidence            9999999554434   58888887654444321100     00011222222222223333    234566667788888


Q ss_pred             HHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCCC----CC
Q psy8850         269 LYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTSA----SL  326 (397)
Q Consensus       269 l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~~----~~  326 (397)
                      +.+.|++ .+.+..+..+.              ...++++.|.+++.  ...++.+.|+  .+...-|...+..    .+
T Consensus       277 ~a~~L~~-~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~  355 (400)
T PRK06234        277 VAKFLES-HPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASM  355 (400)
T ss_pred             HHHHHHc-CCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCCCceecCCccC
Confidence            8888887 67654332221              13467888888642  1346666776  5555556544332    11


Q ss_pred             Ch----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         327 EP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       327 ~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .+    ....+..|+.+    +.||+|++.    |+.+.+++.|.++++.+
T Consensus       356 ~~~~~~~~~~~~~gi~~----~l~R~svGl----E~~~dl~~dl~~al~~~  398 (400)
T PRK06234        356 THSPYTAEERKEAGISD----GLVRLSVGL----EDVDDIIADLKQALDLI  398 (400)
T ss_pred             CCCCCCHHHHHhcCCCC----CeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence            11    12233556554    899999997    56666666666666543

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.95  E-value=1.8e-25  Score=211.39  Aligned_cols=321  Identities=18%  Similarity=0.134  Sum_probs=220.4

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      .+|+|++++.+++..+......  ........+...++++.+++++|.+  ..++.+||++|+..++..+...  .+++.
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~--s~~~~~~~~~~~~le~~la~~~g~~--~~~~~~SG~~An~~ai~~l~~~--~~g~~  133 (406)
T PRK13393         60 QHPAVLAAMHEALDTCGAGAGG--TRNISGTNHYHVLLEAELADLHGKE--AALLFTSGYVSNWAALSTLGSR--LPGCV  133 (406)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhhcC--CCCCE
Confidence            4799999999999874322211  1111122346788999999999964  5666667778999999877631  26788


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      |+.....|+++..++...   |.++..++.+     |++++++.+.    +++++|++++++|++|.+.|+++|.++|++
T Consensus       134 I~~~~~~H~s~~~~~~~~---g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~  205 (406)
T PRK13393        134 ILSDELNHASMIEGIRHS---RAEKRIFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEK  205 (406)
T ss_pred             EEEccchhHHHHHHHHHc---CCeEEEeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHH
Confidence            888889999988887654   7777777643     6777877764    367899999999999999999999999999


Q ss_pred             cCcEEEEecccccCcc-cc-----ccCc--ccccEEEeccccccCCCCceEEEEecCCCCccccccccCCcccccc-CCC
Q psy8850         165 KGVIFHCDAAQAVGKI-DI-----NIQN--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR-SGT  235 (397)
Q Consensus       165 ~gi~livD~a~~~~~~-~~-----~~~~--~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  235 (397)
                      +|+++++|++|+.|.. +.     ....  ..+|+++.|++|.+|..| |+++.+++....+.....      .+. .++
T Consensus       206 ~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G-G~~~~~~~~~~~l~~~~~------~~~~t~~  278 (406)
T PRK13393        206 HGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG-GYITGSAALCDFIRSFAS------GFIFTTS  278 (406)
T ss_pred             cCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC-ceeeCCHHHHHHHHHhCc------CceecCc
Confidence            9999999999985542 11     1111  136888899999777665 888776654444332211      111 234


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC---
Q psy8850         236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK---  311 (397)
Q Consensus       236 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~---  311 (397)
                      .+....++..++++.+.+.. ...+++.++++++++.|++ + ++.+....    +.++.+.+.+ ....++...|.   
T Consensus       279 ~~p~~~aa~~aaL~~~~~~~-~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~i~~v~~~~~~~~~~l~~~L~~~~  351 (406)
T PRK13393        279 LPPAVAAGALASVRHLKASS-AERERHQDRVARLRARLDK-A-GIPHLPNP----SHIVPVMVGDPVLCKQISDELLDRY  351 (406)
T ss_pred             cCHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHHHHHHH-c-CCCcCCCC----CCeEEEEeCCHHHHHHHHHHHHHhC
Confidence            45555666668888775432 2346677889999999987 3 55444322    3344454432 12356666553   


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      |+.+.+.....                .+.+.+.|||+++.+++++|+|+++++|++++.++
T Consensus       352 Gi~v~~~~~p~----------------~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~  397 (406)
T PRK13393        352 GIYVQPINYPT----------------VPRGTERLRITPSPLHTDADIEHLVQALSEIWARL  397 (406)
T ss_pred             CEEEEeECCCC----------------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence            78877642211                01123679999999999999999999999987654

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.95  E-value=3.3e-26  Score=211.19  Aligned_cols=312  Identities=15%  Similarity=0.120  Sum_probs=217.8

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.+++...+....+++.++++-|.+  ..++++||+.|+.+++.++.    ++||+|+++...|.++...+.. +.+.|+
T Consensus        54 ~~YsR~~nPt~~~le~~la~LEg~~--~a~~~~SGmaAi~~~~~~ll----~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi  127 (395)
T PRK08114         54 LFYGRRGTLTHFSLQEAMCELEGGA--GCALYPCGAAAVANAILAFV----EQGDHVLMTGTAYEPTQDFCSKILSKLGV  127 (395)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCC--eEEEEhHHHHHHHHHHHHHc----CCCCEEEEeCCCcHHHHHHHHHHHHhcCc
Confidence            4556666778899999999998876  67888889999999998887    7999999999999998888754 455699


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcC--cEEEEecccccCccccccCcccc
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVGKIDINIQNYKV  189 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g--i~livD~a~~~~~~~~~~~~~~~  189 (397)
                      ++..++..     |.++++++++++|++|++++++||+|.+.|+++|+++||++|  +++++|++++.+.. .+...+++
T Consensus       128 ~v~~vd~~-----d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~Ga  201 (395)
T PRK08114        128 TTTWFDPL-----IGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGI  201 (395)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCC
Confidence            99998853     789999999999999999999999999999999999999984  99999999998876 77788899


Q ss_pred             cEEEecccc-ccCCC--CceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHK-IYGPK--GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       190 d~~~~s~~K-~~g~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      |+++.|.|| ++|+.  +.|+++.+++..+.+.....       ......+....+.+...++    .+.-+.++..+++
T Consensus       202 Divv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~-------~~G~~~~p~~a~l~~rgl~----TL~lR~~~~~~na  270 (395)
T PRK08114        202 DISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSY-------LMGQMVDADTAYMTSRGLR----TLGVRLRQHEESS  270 (395)
T ss_pred             cEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHH-------hccCCCCHHHHHHHHcCCC----cHHHHHHHHHHHH
Confidence            999999999 66664  46777666543222221111       1111222222222222222    2455778888899


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC-C---hHHHHHHhC--CcEecccCccCCCCC
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI-E---GESLLMAIK--DIAVSSGSACTSASL  326 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~---~~~~~~~l~--~i~~~~g~~~~~~~~  326 (397)
                      ..+.+.|++ .|.+..+.-|.              ...++++.|.+++. +   ...+.+.|+  .+...-|...+....
T Consensus       271 ~~va~~L~~-hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg~~SLi~~  349 (395)
T PRK08114        271 LKVAEWLAE-HPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLILA  349 (395)
T ss_pred             HHHHHHHHc-CCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeecccCCccceecc
Confidence            999999998 77664332221              23467888888642 2   234555555  445555554443221


Q ss_pred             ChhhHHHhhCCC--ccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         327 EPSYVLRALGCN--DELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       327 ~~~~~~~~~g~~--~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ............  ....++.||+|++.    |++|.+++.|.+++++
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~DLi~Dl~~Al~~  393 (395)
T PRK08114        350 NQPEEIAAIRPAGEVDFTGTLIRLHIGL----EDVDDLIADLAAGFAR  393 (395)
T ss_pred             CCchhhhccCChhHhcCCCCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence            001111111100  11234899999996    6777777777777764

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.95  E-value=8.9e-26  Score=213.99  Aligned_cols=334  Identities=17%  Similarity=0.134  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEE
Q psy8850          12 RVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIIT   91 (397)
Q Consensus        12 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~   91 (397)
                      .+.+++.+++..  ++  . .    |.......++++.++++++.+  ++++|+||++|+.+++.+++    ++|| |++
T Consensus        58 a~~~a~~~a~~~--g~--~-~----Y~~~~g~~~Lreaia~~~~~~--~vv~t~ggt~A~~~~~~all----~pGD-Vii  121 (460)
T PRK13238         58 AMSDRQWAAMMR--GD--E-A----YAGSRSYYRLEDAVKDIFGYP--YTIPTHQGRAAEQILFPVLI----KKGD-VVP  121 (460)
T ss_pred             hhhHHHHHHHHh--CC--c-c----cCCCCCHHHHHHHHHHHhCCC--cEEECCCHHHHHHHHHHHhC----CCCC-EEc
Confidence            466666666642  11  1 1    222346788999999999976  79999999999999999887    8999 999


Q ss_pred             cCCCChhhHHHHHHHhhCCcEEEEeccCC----------CCCCCHHHHHHHhcC----CceEEEEecccCccc-cccc--
Q psy8850          92 VQTEHKSVLDSIRKLENDGFRVTYLKPKN----------NGLITLSQLEEKICS----DTILVSVMLVNNEIG-VIQP--  154 (397)
Q Consensus        92 ~~~~~~s~~~~~~~~~~~g~~v~~v~~~~----------~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG-~~~~--  154 (397)
                      +++.|.++...+...   |.+++.++++.          .|.+|+++|++++++    ++++|++++++||+| .+++  
T Consensus       122 ~~p~~~~~~~~i~~~---G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~  198 (460)
T PRK13238        122 SNYHFDTTRAHIELN---GATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMA  198 (460)
T ss_pred             cCCcccchHHHHHHc---CCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHH
Confidence            999888888777766   99999998853          245999999999984    799999999999997 7776  


Q ss_pred             -HHHHHHHHHhcCcEEEEecccccCc-----------cccccC------cccccEEEecccc-ccCCCCceEEEEec-CC
Q psy8850         155 -ILEIGELCRSKGVIFHCDAAQAVGK-----------IDINIQ------NYKVDLMSFSAHK-IYGPKGIGALYIRR-NP  214 (397)
Q Consensus       155 -l~~i~~l~~~~gi~livD~a~~~~~-----------~~~~~~------~~~~d~~~~s~~K-~~g~~g~g~~~~~~-~~  214 (397)
                       +++|.++|++||++||+|+++....           ...++.      ....|++++|++| .+++.| |+++.++ ++
T Consensus       199 ~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l  277 (460)
T PRK13238        199 NLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDL  277 (460)
T ss_pred             HHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHH
Confidence             5789999999999999999875321           111111      1147999999999 677775 8888874 44


Q ss_pred             CCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceE
Q psy8850         215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL  294 (397)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  294 (397)
                      ...++......  ......+.++...+.++..+++...+  +.+.+...+++++|.+.|.+  .|+.+..+.+   ++.+
T Consensus       278 ~~~~~~~~~~~--~g~~t~~g~~~~~~~Ala~~l~e~~~--~~~~~~~~~~~~~l~~~L~~--~G~~~~~p~G---g~~v  348 (460)
T PRK13238        278 FTECRTLCILY--EGFPTYGGLAGRDMEALAVGLYEGMD--EDYLAYRIGQVEYLGEGLEE--AGVPIQTPAG---GHAV  348 (460)
T ss_pred             HHHhhhccccc--CCcccccCcHHHHHHHHHhhHHHhhC--hHHHHHHHHHHHHHHHHHHH--CCCCeEccCC---ceEE
Confidence            44444332111  01123455555656677666664332  22333334467999999988  5888887655   3455


Q ss_pred             EEEecCC---------ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC-CCCHHHHHH
Q psy8850         295 NISFNFI---------EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDF  361 (397)
Q Consensus       295 ~~~~~~~---------~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~-~~~~~~i~~  361 (397)
                      .+.+...         ++.++...|.   ||.+.++..|..+...+      .|.........+|+++.- .-+.+.+|.
T Consensus       349 ~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~------~~~~~~~~~~~~Rla~~rr~~~~~~~~~  422 (460)
T PRK13238        349 FVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPK------TGEQLPAPAELLRLAIPRRVYTQSHMDY  422 (460)
T ss_pred             EEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCC------CccccCCccceEEEecccccCCHHHHHH
Confidence            5554422         3456666664   89888876554422110      010011124889999883 348999999


Q ss_pred             HHHHHHHHHHHHHhcCccch
Q psy8850         362 TIKLLKMKVKKLRELSPLWD  381 (397)
Q Consensus       362 ~~~~l~~~~~~~~~~~~~~~  381 (397)
                      ++++|.++. +.++.-+++.
T Consensus       423 ~~~~l~~~~-~~~~~~~~~~  441 (460)
T PRK13238        423 VAEALKAVK-ENRESIKGLR  441 (460)
T ss_pred             HHHHHHHHH-HhHhhcCCeE
Confidence            999999876 4444444553

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.95  E-value=6.9e-26  Score=209.99  Aligned_cols=307  Identities=16%  Similarity=0.118  Sum_probs=213.3

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.+++...+....+++.++++.|.+  ++++++||++|+..++.++.    ++||+|+++++.|+++...+.. +...|+
T Consensus        42 ~~Y~r~gnPt~~~lE~~lA~l~g~~--~~~~~~sG~~Ai~~al~all----~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi  115 (377)
T TIGR01324        42 LTYGRRGTLTHFALQDAMCELEGGA--GCYLYPSGLAAVTNSILAFV----KAGDHVLMVDSAYEPTRYFCDIVLKRMGV  115 (377)
T ss_pred             CcccCCCCccHHHHHHHHHHHhCCC--cEEEECcHHHHHHHHHHHhc----CCCCEEEEcCCCcHHHHHHHHHHHHhcCc
Confidence            3444455567889999999999976  78899999999999999887    8999999999999887665433 344588


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++..++.+     +.+++++++++++++|++++++||+|.+.|+++|+++|+++|+++++|++|+.|... ....+++|+
T Consensus       116 ~v~~~d~~-----~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~-~pl~~gaDi  189 (377)
T TIGR01324       116 DITYYDPL-----IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLF-KPLEHGVDI  189 (377)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc-CccccCceE
Confidence            88877643     237899999999999999999999999999999999999999999999999988753 233568999


Q ss_pred             EEecccc-ccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR  268 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~  268 (397)
                      ++.|++| +.|..+  .|+++.+++..+.+.....       ......+....+.+...++    .+..+.++..+++..
T Consensus       190 vv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~-------~~G~~l~p~~a~~~~rgl~----tl~~R~~~~~~~a~~  258 (377)
T TIGR01324       190 SIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSY-------LMGQMVDADDAYTTLRGLR----TLGVRLKQHQESSLA  258 (377)
T ss_pred             EEecCceeccCCCCceEEEEEeCHHHHHHHHHHHH-------HhCCCCCHHHHHHHHhhhh----hHHHHHHHHHHHHHH
Confidence            9999999 555433  5777777654443332111       1112233333333333444    334456777777778


Q ss_pred             HHHHHhhhcCcEE-EeCCC-------------CCCCCceEEEEecCCC---hHHHHHHhC--CcEecccCccCCCC----
Q psy8850         269 LYNGLMESIEEIY-INGDM-------------NNRIPHNLNISFNFIE---GESLLMAIK--DIAVSSGSACTSAS----  325 (397)
Q Consensus       269 l~~~l~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~l~--~i~~~~g~~~~~~~----  325 (397)
                      +.+.|++ .|.+. ++.+.             ....++++.|.+++.+   ..++.+.|+  ++...-|...+...    
T Consensus       259 la~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~  337 (377)
T TIGR01324       259 IAKWLSE-QPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCNQP  337 (377)
T ss_pred             HHHHHHh-CCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecCCC
Confidence            8888887 66553 22221             1134678888887422   356667776  56666665544322    


Q ss_pred             -CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         326 -LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       326 -~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                       +.+.. ....|+.    ++.||+|++.    |+.|.+++.|.++++.
T Consensus       338 ~~~~~~-~~~~~~~----~~liR~svGl----E~~~dl~~dl~~al~~  376 (377)
T TIGR01324       338 ELGHRP-NIKRNLE----GPLIRVHIGL----ENVDDLKADLKAGFEA  376 (377)
T ss_pred             CCCHHH-HHhccCC----CCEEEEEeCC----CCHHHHHHHHHHHHhc
Confidence             22211 2233333    3799999997    5677777777776653

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.95  E-value=5.6e-26  Score=211.45  Aligned_cols=310  Identities=14%  Similarity=0.095  Sum_probs=214.1

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhC-Cc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g~  111 (397)
                      +.+++...+....+++.|+++.|.+  .+++++||++|+.+++.++.    ++||+|+++++.|+++...+..+... |.
T Consensus        44 ~~Y~R~~~pt~~~L~~~lA~l~g~~--~~i~~~sg~~Ai~~~l~~l~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi  117 (386)
T PRK08045         44 HDYSRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCY  117 (386)
T ss_pred             ceeeCCCCccHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence            4455556677889999999999964  69999999999999999887    79999999999999877766655433 55


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++..++.     .|++++++++++++++|++++|+||||.+.|+++|.++|+++|+++++|++|..+..... ..+++|+
T Consensus       118 ~v~~vd~-----~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~p-l~~gaDi  191 (386)
T PRK08045        118 RVLFVDQ-----GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNP-LALGADL  191 (386)
T ss_pred             EEEEeCC-----CCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCc-hhhCCCE
Confidence            7776642     589999999999999999999999999999999999999999999999999987654322 2457899


Q ss_pred             EEecccc-ccCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      ++.|++| +.|+.+  .|+++.+++ ..+.+.....       ....+.+....+.+..+++    .+..++++..+++.
T Consensus       192 vv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~-------~~g~~~~p~~~~l~~rgl~----tl~~R~~~~~~na~  260 (386)
T PRK08045        192 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN-------NIGVTGGAFDSYLLLRGLR----TLVPRMELAQRNAQ  260 (386)
T ss_pred             EEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhhhc----cHHHHHHHHHHHHH
Confidence            9999999 556554  577766432 2222221110       1111233333333333443    35667788888899


Q ss_pred             HHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC-C-hHHHHHHhC--CcEecccCccCC----CC
Q psy8850         268 RLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI-E-GESLLMAIK--DIAVSSGSACTS----AS  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~-~~~~~~~l~--~i~~~~g~~~~~----~~  325 (397)
                      .+.+.|++ .|.+..+.-|.              ...++++.|.+++. + ..++.+.|+  .+...-|...+.    ..
T Consensus       261 ~la~~L~~-~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~  339 (386)
T PRK08045        261 AIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAAT  339 (386)
T ss_pred             HHHHHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCCCCceeEeCCCC
Confidence            99999988 77664332111              13467888888641 1 245666665  344444543322    11


Q ss_pred             CCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         326 LEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       326 ~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +.+    ....+..|+.+    +.||+|++.    |+.|.+++.|.++++...
T Consensus       340 ~~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~~~  384 (386)
T PRK08045        340 MTHAGMAPEARAAAGISE----TLLRISTGI----EDGEDLIADLENGFRAAN  384 (386)
T ss_pred             cccccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHHHHHhh
Confidence            111    12223556554    899999997    567777777777776543

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.95  E-value=3.5e-26  Score=213.36  Aligned_cols=302  Identities=17%  Similarity=0.178  Sum_probs=205.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEEE
Q psy8850          36 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVT  114 (397)
Q Consensus        36 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v~  114 (397)
                      ++...+...++++.+++++|.+  .+++++||+.|+.+++.++.    ++||+|+++.+.|+++...+.. +...|.+++
T Consensus        49 ~r~~~p~~~~le~~la~l~g~~--~~~~~~sG~~Ai~~al~al~----~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~  122 (380)
T TIGR01325        49 SRYANPTVAAFEERIAALEGAE--RAVATATGMSAIQAALMTLL----QAGDHVVASRSLFGSTVGFISEILPRFGIEVS  122 (380)
T ss_pred             ecCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEecCCcchHHHHHHHHHHHhCCEEE
Confidence            3344566889999999999985  67889999999999998887    7899999999999887665543 344599999


Q ss_pred             EeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEe
Q psy8850         115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF  194 (397)
Q Consensus       115 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~  194 (397)
                      .++.+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+..... ...++|+++.
T Consensus       123 ~v~~~-----d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~p-l~~g~Divv~  196 (380)
T TIGR01325       123 FVDPT-----DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQP-LKLGADVVVY  196 (380)
T ss_pred             EECCC-----CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-hhhCCCEEEe
Confidence            98865     78999999999999999999999999999999999999999999999999975433222 2447899999


Q ss_pred             ccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         195 SAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN  271 (397)
Q Consensus       195 s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~  271 (397)
                      |++|++++.|   .|+++.+++..+.+.......       .+..+....+.+...++    .+..+.++..+++..+.+
T Consensus       197 S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~-------g~~~~p~~a~~~l~~l~----tl~~r~~~~~~~a~~la~  265 (380)
T TIGR01325       197 SATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHT-------GPAMSPFNAWVLLKGLE----TLSLRMQKQFDSALAIAE  265 (380)
T ss_pred             eccceecCCCCeEEEEEEeCHHHHHHHHHHHHhh-------CCCCCHHHHHHHHhccC----cHHHHHHHHHHHHHHHHH
Confidence            9999554433   377777765544443322110       11222222222222333    344567777888888888


Q ss_pred             HHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccC----CCCCCh--
Q psy8850         272 GLMESIEEIYINGDMN--------------NRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACT----SASLEP--  328 (397)
Q Consensus       272 ~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~----~~~~~~--  328 (397)
                      .|++ .|.+..+.-|.              ...++++.|.+++. ...++.+.|+  .+...-|...+    |..+.+  
T Consensus       266 ~L~~-~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~  344 (380)
T TIGR01325       266 WLQA-QPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADRAAAWKVLDAVELVSITNNLGDAKSTITHPATTTHGR  344 (380)
T ss_pred             HHHc-CCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcceEcccCCCCCeeeeCCCccCccc
Confidence            8888 77655332211              13467888888631 1345556665  33444443332    211111  


Q ss_pred             --hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         329 --SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       329 --~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                        ....+..|+.+    +.||||++.    |+.|.+++.|+++
T Consensus       345 ~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~a  379 (380)
T TIGR01325       345 MQPEERAAAGIGD----GLVRLSVGL----EDVDDLIADLKRA  379 (380)
T ss_pred             CCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHhh
Confidence              11223556554    899999997    5667777776654

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK05968 hypothetical protein; Provisional

Probab=99.95  E-value=3.4e-26  Score=213.74  Aligned_cols=309  Identities=15%  Similarity=0.141  Sum_probs=215.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.+++...+...++++.+++++|.+  ..++++||+.|+.+++.++.    ++||+|+++.+.|+++...+.. +...|+
T Consensus        55 ~~Y~r~~~p~~~~le~~lA~l~g~~--~av~~~sG~~Ai~~al~al~----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  128 (389)
T PRK05968         55 PIYSRGDNPTVRAFEEMLAKLEGAE--DARGFASGMAAISSTVLSFV----EPGDRIVAVRHVYPDAFRLFETILKRMGV  128 (389)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            3344444567889999999999987  34555777889998888877    7999999999999988766653 344599


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      +++.++.+     |++++++++ +++++|++++++|+++.+.|+++|.++|+++|+++|+|++++.+..... ...++|+
T Consensus       129 ~v~~vd~~-----d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p-~~~g~Di  201 (389)
T PRK05968        129 EVDYVDGR-----DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRP-ITLGVDL  201 (389)
T ss_pred             eEEEeCCC-----CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCc-hhcCCcE
Confidence            99998754     889999988 6789999999999999999999999999999999999999986643222 2347899


Q ss_pred             EEecccc-ccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR  268 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~  268 (397)
                      +++|++| +.|+.+  .|+++.+++..+++......+      ..+..+....+.+...++    .+..+.++..+++++
T Consensus       202 vv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~------~g~~~~~~~A~~~l~~L~----tl~~r~~~~~~~a~~  271 (389)
T PRK05968        202 VIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPY------LGAKLSPFEAWLLLRGLR----TLPLRMKAHEASALE  271 (389)
T ss_pred             EEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHh------CCCCCChHHHHHHHcccC----cHHHHHHHHHHHHHH
Confidence            9999999 555543  588877766554444321100      011222222222223333    345667777788999


Q ss_pred             HHHHHhhhcCcEEEeCCCC---------CCCCceEEEEec-CCChHHHHHHhC--CcEecccCccC---CCCCC-----h
Q psy8850         269 LYNGLMESIEEIYINGDMN---------NRIPHNLNISFN-FIEGESLLMAIK--DIAVSSGSACT---SASLE-----P  328 (397)
Q Consensus       269 l~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~l~--~i~~~~g~~~~---~~~~~-----~  328 (397)
                      +.+.|++ .|.+..+..+.         ...++++.|.++ +.+..++.+.|+  ++.++.|..++   |..+.     +
T Consensus       272 la~~L~~-~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~  350 (389)
T PRK05968        272 IARRLKA-HPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQ  350 (389)
T ss_pred             HHHHHHh-CCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCC
Confidence            9999998 88876554322         123458888886 334567778887  67778887777   32221     1


Q ss_pred             hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         329 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       329 ~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ....+..|+.+    +.||+|++.    |+.+.+++.|++++++.
T Consensus       351 ~~~~~~~gi~~----~liR~SvGl----E~~~dl~~dl~~al~~~  387 (389)
T PRK05968        351 PNSAARFGVSP----RSVRLHVGL----EGTEALWADLEQALAAA  387 (389)
T ss_pred             HHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHHh
Confidence            23344556554    899999997    45566666666666544

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.95  E-value=5.7e-25  Score=208.82  Aligned_cols=350  Identities=17%  Similarity=0.197  Sum_probs=239.2

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHH-HHHHHHHHHhCCCCCcEEE---eCChhHHHHHHHHH
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIE-KARNEVAQLIYADPREIIW---TSGATESNNLAIKG   77 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~i~~---~~g~t~a~~~~l~~   77 (397)
                      +|...+++.+++++...+...+  +.|.+ .+..|....+.++ .+++..+++|+...+.+.+   ..||+.|+..++.+
T Consensus        41 asen~~s~~v~~a~~s~~~~ky~~G~~g~-r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~a  119 (475)
T PLN03226         41 ASENFTSRAVMEALGSCLTNKYSEGLPGA-RYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTA  119 (475)
T ss_pred             cCCccCCHHHHHHHhhHHhccccCCCCCC-cCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHH
Confidence            5666789999999999995434  45655 3444433444444 4677788999987655443   47889999999999


Q ss_pred             hHhhhccCCCEEEEcCC---CChhhHHHHHH--HhhCCcEEEE--eccC-CCCCCCHHHHHHHhcC-CceEEEEecccCc
Q psy8850          78 AAHFYKKRGKHIITVQT---EHKSVLDSIRK--LENDGFRVTY--LKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNE  148 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~---~~~s~~~~~~~--~~~~g~~v~~--v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~  148 (397)
                      ++    ++||+|+..+.   .|.++......  +...+..+..  ++.+ +++.+|+++|++++.+ ++++|++.  .+.
T Consensus       120 L~----~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~--~S~  193 (475)
T PLN03226        120 LL----QPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG--ASA  193 (475)
T ss_pred             hC----CCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe--cCc
Confidence            98    89999998554   33333221111  0011222222  3334 5788999999998864 77776553  234


Q ss_pred             ccccccHHHHHHHHHhcCcEEEEecccccCccccccCc---ccccEEEecccc-ccCCCCceEEEEecCCCCcccc----
Q psy8850         149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQN---YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA----  220 (397)
Q Consensus       149 tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~---~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~----  220 (397)
                      +|...|+++|.++|+++|+++++|++|+.|....+...   .++|++++|+|| +.||.| |+++++++....+.+    
T Consensus       194 ~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~~~~g~~~  272 (475)
T PLN03226        194 YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMIFFRKGPKPPKGQGEGA  272 (475)
T ss_pred             CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEEEEchhhcccccCCCcc
Confidence            78899999999999999999999999998887544321   268999999999 669998 888888754322110    


Q ss_pred             ---c--cccCCccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceE
Q psy8850         221 ---Q--IHGGGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL  294 (397)
Q Consensus       221 ---~--~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  294 (397)
                         .  .........+ .++++...++++.++++++.+ +.+++.+++.++.++|++.|.+  .|+.+......  .+++
T Consensus       273 ~~d~~~~i~~a~~~~~-~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~--~G~~l~~~~t~--~hi~  347 (475)
T PLN03226        273 VYDYEDKINFAVFPGL-QGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS--KGYKLVTGGTD--NHLV  347 (475)
T ss_pred             HHHHHHHhccccCCcc-CCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh--CCCEEEcCCCC--CCEE
Confidence               0  0000001112 356888899999999998864 5788899999999999999998  68888864322  4566


Q ss_pred             EEEec--CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe----eCCCCCHHHHHHHHHHH
Q psy8850         295 NISFN--FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT----IGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       295 ~~~~~--~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~----~~~~~~~~~i~~~~~~l  366 (397)
                      .+.+.  +.+..++...|.  +|.+..+.....              ......+.||++    .+...+++|++++.+.|
T Consensus       348 lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~--------------~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i  413 (475)
T PLN03226        348 LWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGD--------------SSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFL  413 (475)
T ss_pred             EEEccCCCCCHHHHHHHHHHCCCEECCCCCCCC--------------cccCCCCCcccCcHHHHHCCCCHHHHHHHHHHH
Confidence            66663  456667777675  888776532111              112233668884    33446799999999999


Q ss_pred             HHHHHHHHhcCccc
Q psy8850         367 KMKVKKLRELSPLW  380 (397)
Q Consensus       367 ~~~~~~~~~~~~~~  380 (397)
                      .++++...+...+.
T Consensus       414 ~~~~~~~~~~~~~~  427 (475)
T PLN03226        414 HRAVTIALKIQKEH  427 (475)
T ss_pred             HHHHHHhhhhhhhc
Confidence            99998765544443

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.95  E-value=4.8e-26  Score=212.66  Aligned_cols=310  Identities=17%  Similarity=0.144  Sum_probs=213.2

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~  111 (397)
                      |.+++...+...++++.+++++|.+  ..++++||+.|+.+++.++.    ++||+|+++.+.|+++...+... ...|+
T Consensus        51 ~~y~r~~~p~~~~le~~lA~l~g~~--~av~~~sG~~Ai~~~l~al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~  124 (391)
T TIGR01328        51 YIYSRLGNPTVSNLEGRIAFLEGTE--AAVATSSGMGAIAATLLTIL----KAGDHLISDECLYGCTFALLEHALTKFGI  124 (391)
T ss_pred             CceeCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence            4444445567889999999999987  46788888999999998887    79999999999998777666554 33499


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++..++.+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+...... ..++|+
T Consensus       125 ~~~~vd~~-----d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~-~~g~Di  198 (391)
T TIGR01328       125 QVDFINMA-----IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPV-ALGVDV  198 (391)
T ss_pred             EEEEECCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCch-hcCCCE
Confidence            99999876     799999999999999999999999999999999999999999999999999866543222 348999


Q ss_pred             EEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR  268 (397)
Q Consensus       192 ~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~  268 (397)
                      +++|++|.+|+.|   .|+++.+++....+.......     ...+.++....+.....++    .+..+.++..+++.+
T Consensus       199 vv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~-----~~g~~l~~~~a~l~l~~L~----tl~~r~~~~~~na~~  269 (391)
T TIGR01328       199 VVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKD-----MTGSVISPFDAWLILRGLK----TLNIRMKRHSENAMK  269 (391)
T ss_pred             EEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHh-----CCCCCCCcHHHHHHHhCcC----cHHHHHHHHHHHHHH
Confidence            9999999655433   477777765544443211100     0011222222222212232    344567778888999


Q ss_pred             HHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCC----CCC
Q psy8850         269 LYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS----ASL  326 (397)
Q Consensus       269 l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~----~~~  326 (397)
                      +.+.|++ .|++..+.-|+              ...++++.|.+++.  ...++.+.|+  .....-|...+.    .++
T Consensus       270 la~~L~~-~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~  348 (391)
T TIGR01328       270 VAEYLKS-HPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASM  348 (391)
T ss_pred             HHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcceEecCCCCCcccCcCCCcc
Confidence            9999988 77765332221              12366888888631  1345555555  344445544332    222


Q ss_pred             Chh----hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         327 EPS----YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       327 ~~~----~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+.    ...+..|+..    +.||+|++.    |+.|.+++.|.+++..
T Consensus       349 ~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~  390 (391)
T TIGR01328       349 THAVVPKEEREAAGITD----GMIRLSVGL----EDADDLIADLKQALDA  390 (391)
T ss_pred             ccccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHHHhh
Confidence            111    1223455543    899999997    6788888888877764

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.95  E-value=1.6e-25  Score=209.50  Aligned_cols=311  Identities=14%  Similarity=0.090  Sum_probs=210.8

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~  111 (397)
                      +.+++...+...++++.|+++.|.+  ..++++||++|+.+++.++.    ++||+|+++.+.|++....+..+ ...|.
T Consensus        52 ~~y~R~~~p~~~~Le~~lA~l~g~~--~~v~~~sG~~Ai~~~l~all----~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~  125 (405)
T PRK08776         52 YDYTRSGNPTRDLLGEALAELEGGA--GGVITATGMGAINLVLNALL----QPGDTLVVPHDAYGGSWRLFNALAKKGHF  125 (405)
T ss_pred             CcccCCCChHHHHHHHHHHHHhCCC--ceEEEcCHHHHHHHHHHHHh----CCCCEEEEccCCchHHHHHHHHHHHhcCc
Confidence            4455555667788999999999975  34566777899999999887    89999999999999876655543 33478


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      +++.++..     |++++++++++++++|++++++||||.+.++++|+++|+++|+++|+|++|..+.....+ .+++|+
T Consensus       126 ~v~~v~~~-----d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl-~~gaDi  199 (405)
T PRK08776        126 ALITADLT-----DPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPL-EFGADL  199 (405)
T ss_pred             EEEEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcc-cccCCE
Confidence            88888753     889999999999999999999999999999999999999999999999999866532222 358899


Q ss_pred             EEecccc-ccCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      +++|++| +.|+.+  .|+++.+++ ..+++......       .....+....+.+...++    .++.+.++..+++.
T Consensus       200 vv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~-------~g~~~s~~~a~l~~~gl~----tl~~r~~~~~~na~  268 (405)
T PRK08776        200 VLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANA-------LGLTGSPFDAFLTLRGLR----TLDARLRVHQENAD  268 (405)
T ss_pred             EEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhhC----cHHHHHHHHHHHHH
Confidence            9999999 555543  477766543 22222211110       011223333333333333    45667888888999


Q ss_pred             HHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC-C-hHHHHHHhC--CcEecccCccCC----CC
Q psy8850         268 RLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI-E-GESLLMAIK--DIAVSSGSACTS----AS  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~-~~~~~~~l~--~i~~~~g~~~~~----~~  325 (397)
                      .+.+.|++ .|.+.-+.-|+              ...++++.|.+++. + ..++.+.|+  .+...-|...+.    ..
T Consensus       269 ~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~  347 (405)
T PRK08776        269 AIAALLDG-HAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRYFTLAESLGGVESLIAHPAS  347 (405)
T ss_pred             HHHHHHHc-CCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCCcceEccCCCCCceEEECCcc
Confidence            99999988 77665332211              23467888888641 1 245556665  334444443332    12


Q ss_pred             CCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         326 LEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       326 ~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +.+    ....+..|+.+    +.||+|++.    |++|.+++.|+++++++..
T Consensus       348 ~~h~~~~~~~~~~~gi~~----~liR~svGl----E~~~dli~dl~~al~~~~~  393 (405)
T PRK08776        348 MTHAAMTAEARAAAGISD----GLLRLSVGI----ESAEDLLIDLRAGLARAEA  393 (405)
T ss_pred             cccccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHHHHHhHH
Confidence            211    12234556554    899999997    5666666666666665543

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.95  E-value=1.9e-26  Score=215.45  Aligned_cols=307  Identities=15%  Similarity=0.142  Sum_probs=204.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.+++...+...++++.++++.|.+ +.+ ++++|+.|+.+++. +.    ++||+|+++++.|+++...+.. +...|.
T Consensus        46 ~~y~r~~~p~~~~le~~lA~l~g~~-~~v-~~~sG~~ai~~~l~-~l----~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~  118 (390)
T PRK08064         46 YDYSRSGNPTREALEDIIAELEGGT-KGF-AFASGMAAISTAFL-LL----SKGDHVLISEDVYGGTYRMITEVLSRFGI  118 (390)
T ss_pred             CcccCCCChhHHHHHHHHHHHhCCC-CeE-EECCHHHHHHHHHH-Hh----CCCCEEEEccCccchHHHHHHHHHHHcCC
Confidence            4455555678899999999999987 344 45666778887775 45    6899999999999987766654 344599


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      +++.++.+     |++++++++++++++|++++|+||||.+.|+++|.++|+++|+++++|++++.+...... .+++|+
T Consensus       119 ~v~~v~~~-----d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~-~~g~Di  192 (390)
T PRK08064        119 EHTFVDMT-----NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL-DLGADV  192 (390)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch-hhCCcE
Confidence            99999874     789999999999999999999999999999999999999999999999998866542222 458999


Q ss_pred             EEecccc-ccCCCC--ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      ++.|+|| +.|+.|  .|++++++ +..+.+......++       ...+....+.+...++    .+..+.++..+++.
T Consensus       193 vv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g-------~~~~~~~a~l~~~gl~----tl~~R~~~~~~~a~  261 (390)
T PRK08064        193 VLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFG-------AVLGVQDCWLVLRGLK----TLHVRLEHSSETAN  261 (390)
T ss_pred             EEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcC-------CCCCHHHHHHHHcccC----cHHHHHHHHHHHHH
Confidence            9999999 566655  48777764 34444443332211       0111111111111111    24567777788888


Q ss_pred             HHHHHHhhhcCcEE-EeCC-------------CCCCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccCC----CCC
Q psy8850         268 RLYNGLMESIEEIY-INGD-------------MNNRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACTS----ASL  326 (397)
Q Consensus       268 ~l~~~l~~~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~----~~~  326 (397)
                      .+.+.|++ .+.+. +.-+             .....++++.|.+++.+ ...+.+.+.  .+.++.|...+.    ..+
T Consensus       262 ~la~~L~~-~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~  340 (390)
T PRK08064        262 KIALYLQE-HPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKM  340 (390)
T ss_pred             HHHHHHhc-CCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcceEcccCCCCcceeECCccc
Confidence            88888887 55442 2211             11234568888886422 223333433  235666643332    111


Q ss_pred             Ch----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         327 EP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       327 ~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      .+    .......|+.    .+.||+|++.+.+++.++.+.++|++
T Consensus       341 ~h~~~~~~~~~~~gi~----~~liR~SvGle~~~dli~dl~~Al~~  382 (390)
T PRK08064        341 SHAAMPKEERDERGIT----DGLLRLSVGLENVDDLIADFEQALSY  382 (390)
T ss_pred             ccccCCHHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHHh
Confidence            11    1122234443    38999999997777777777766665

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.95  E-value=5.8e-26  Score=211.28  Aligned_cols=307  Identities=13%  Similarity=0.103  Sum_probs=211.2

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~  111 (397)
                      +.+++...+...++++.++++.+.  +++++++|+++|+.+++.++.    ++||+|+++.+.|+++...+..+.. .+.
T Consensus        43 ~~Y~R~~~p~~~~le~~lA~l~g~--~~v~~~~gg~~Ai~~~l~all----~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~  116 (382)
T TIGR02080        43 YDYSRSGNPTRDLLQQALAELEGG--AGAVVTNTGMSAIHLVTTALL----GPDDLLVAPHDCYGGTYRLLNALAKKGCF  116 (382)
T ss_pred             CcccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhcCe
Confidence            334555566788999999999995  479999999999999999987    7999999999999988776665433 367


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++..++.     .|++++++++++++++|++++|+||||.+.|+++|+++|+++|+++++|++|..+.....+ ..++|+
T Consensus       117 ~v~~~d~-----~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl-~~gaDi  190 (382)
T TIGR02080       117 RVLFVDQ-----GDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL-ALGADL  190 (382)
T ss_pred             EEEEECC-----CCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCE
Confidence            7777653     3799999999999999999999999999999999999999999999999999866543222 347899


Q ss_pred             EEecccc-ccCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      ++.|++| +.|+.+  .|+++.++. ..+.+......       .....+....+.+...++    .+..+.++..+++.
T Consensus       191 vv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~-------~g~~~sp~~a~l~lr~l~----tl~~R~~~~~~na~  259 (382)
T TIGR02080       191 VLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANN-------LGVTGGAFDSYLTLRGLR----TLVARMRLQQRNAQ  259 (382)
T ss_pred             EEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHc-------cCCCCCHHHHHHHHcccc----hHHHHHHHHHHHHH
Confidence            9999999 555555  577766533 32323211110       011222222222222333    34455777788888


Q ss_pred             HHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC-C-hHHHHHHhC--CcEecccCccCC----CC
Q psy8850         268 RLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI-E-GESLLMAIK--DIAVSSGSACTS----AS  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~-~~~~~~~l~--~i~~~~g~~~~~----~~  325 (397)
                      .+.+.|++ .|.+..+.-|.              ...++++.|.+++. . ..++.+.|+  .+...-|...+.    ..
T Consensus       260 ~~a~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~  338 (382)
T TIGR02080       260 AIVEYLQT-QPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHPAT  338 (382)
T ss_pred             HHHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcceEeccCCCCcceeECCCc
Confidence            99999988 77665332211              23467888888631 1 235555665  445555544332    11


Q ss_pred             CCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         326 LEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       326 ~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +.+    ....+..|+.+    +.||||++.    |+.|.+++.|.++++
T Consensus       339 ~~~~~~~~~~~~~~gi~~----~liRlsvGl----E~~~dl~~dl~~al~  380 (382)
T TIGR02080       339 MTHAAMGPEARAEAGISD----TLLRLSVGL----EDADDLIADLEQGLR  380 (382)
T ss_pred             cCcccCCHHHHHhcCCCc----CeEEEEecc----CCHHHHHHHHHHHHh
Confidence            111    12234566654    899999997    667777777777765

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=1.1e-25  Score=206.88  Aligned_cols=295  Identities=17%  Similarity=0.116  Sum_probs=210.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      ..++|+.+++++.+.+....   .. .|.     .....+++++++++++   +++++|++|+|+++++.+++.++    
T Consensus        30 ~~~~p~~~~~~~~~~~~~~~---~~-~Y~-----~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~----   96 (335)
T PRK14808         30 PFPFPEDLVDEVFRRLNSDT---LR-IYY-----DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF----   96 (335)
T ss_pred             CCCCCHHHHHHHHHHhhhhh---hh-cCC-----CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh----
Confidence            34678899999988764310   00 111     1136788999999998   78889999999999999998865    


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHH
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC  162 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~  162 (397)
                          +.|++.+|+|+.+...+...   |.+++.+|.++++.++...    + ++++++++++|+||||.+++.+++.+++
T Consensus        97 ----d~v~v~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~  164 (335)
T PRK14808         97 ----DRSVFFPPTYSCYRIFAKAV---GAKFLEVPLTKDLRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIERIL  164 (335)
T ss_pred             ----CcEEECCCCHHHHHHHHHHc---CCeEEEecCCCcCCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHHHHH
Confidence                46999999999999988888   9999999998777554332    2 3578999999999999999999999998


Q ss_pred             HhcCcEEEEecccccCc--cccc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850         163 RSKGVIFHCDAAQAVGK--IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~--~~~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
                       +++++||+|++|.-..  .... .......+++.|++|.+|.+|  +|+++++++....+......        . ..+
T Consensus       165 -~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~~--------~-~~~  234 (335)
T PRK14808        165 -KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLP--------F-NVS  234 (335)
T ss_pred             -hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcCC--------C-CCC
Confidence             5899999999987321  1111 112245688899999766445  79999887665555433211        1 223


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV  315 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~  315 (397)
                      .....+..++++. .+.+.+..+.+.+.++++.+.|++ + ++.+..+ .   ++++++.++..+..++.+.+.  ||.+
T Consensus       235 ~~~q~a~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~-~---g~f~~~~l~~~~~~~~~~~l~~~Gi~V  307 (335)
T PRK14808        235 YVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE-M-GYRITDS-R---GNFVFIFMEKEEKERLLEHLRAKNIAV  307 (335)
T ss_pred             HHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCEECCC-C---CeEEEEeCCCccHHHHHHHHHHCCeEE
Confidence            3333444556653 234566667777888899999988 4 6665543 2   456677776545567777665  8888


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +.   |                     ..++||+++   +.+++++++++|+++
T Consensus       308 ~~---~---------------------~~~~Risi~---~~~~~~~~~~~l~~~  334 (335)
T PRK14808        308 RS---F---------------------REGVRITIG---KREENDMILKELEVF  334 (335)
T ss_pred             EE---C---------------------CCCeEEecC---CHHHHHHHHHHHHhh
Confidence            62   1                     157999998   589999999999753

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.95  E-value=9.8e-26  Score=209.95  Aligned_cols=338  Identities=15%  Similarity=0.149  Sum_probs=238.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +|...+++.+++++...+...+  +.|....|.......+....+.+..+++|+++..++.. .||+.|+..++.+++  
T Consensus        56 asEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp-~Sg~~An~~v~~all--  132 (493)
T PRK13580         56 ASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQP-HSGADANLVAFWAIL--  132 (493)
T ss_pred             cccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccC-CCcHHHHHHHHHHHh--
Confidence            4566789999999998887755  56665344333344455555899999999998766665 466679999999988  


Q ss_pred             hccC-------------------------------CCEEEEcCCCChhhHHHH---HHHhhCCcEEEEeccC-CCCCCCH
Q psy8850          82 YKKR-------------------------------GKHIITVQTEHKSVLDSI---RKLENDGFRVTYLKPK-NNGLITL  126 (397)
Q Consensus        82 ~~~~-------------------------------g~~vl~~~~~~~s~~~~~---~~~~~~g~~v~~v~~~-~~~~~d~  126 (397)
                        +|                               ||+|+..+..++.+...-   ... ....+...++++ +++.+|.
T Consensus       133 --~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~-~~~~~~~~y~vd~~~g~iD~  209 (493)
T PRK13580        133 --AHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNIS-GKMFHQRSYGVDPDTGLLDY  209 (493)
T ss_pred             --cccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchh-hheeeeEecccCcccCccCH
Confidence              44                               789988877765553321   111 012566677777 5689999


Q ss_pred             HHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccC------cccccEEEecccc-c
Q psy8850         127 SQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ------NYKVDLMSFSAHK-I  199 (397)
Q Consensus       127 ~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~------~~~~d~~~~s~~K-~  199 (397)
                      ++++++++++++.|++++.+|. |...|+++|.++|+++|+++++|++|++|.+..+..      ..++|++++|+|| +
T Consensus       210 d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL  288 (493)
T PRK13580        210 DEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTL  288 (493)
T ss_pred             HHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhc
Confidence            9999999999999999999888 557899999999999999999999999887653331      1268999999999 6


Q ss_pred             cCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcC
Q psy8850         200 YGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIE  278 (397)
Q Consensus       200 ~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~  278 (397)
                      +||.| |+++++++..+.+...       ..+..|++..+.+++...++..+.+ +.+++++++.++.++|++.|.+  .
T Consensus       289 ~GP~G-G~I~~~~~l~~~L~~a-------~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~--~  358 (493)
T PRK13580        289 RGPRG-GLVLAKKEYADAVDKG-------CPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLK--R  358 (493)
T ss_pred             cCCCe-EEEEecHHHHHHHhhC-------CCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh--c
Confidence            79986 9999987655444211       1133345556677777677776643 3577899999999999999998  6


Q ss_pred             cEEEeCCCCCCCCceEEEEecCCC--hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-
Q psy8850         279 EIYINGDMNNRIPHNLNISFNFIE--GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-  353 (397)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-  353 (397)
                      |+.+....  ...+++.+.+.+..  ...+.+.|.  ||.+..-.....             ....+....|||+++.. 
T Consensus       359 G~~vv~gg--TdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptv-------------p~g~~~~srLRIg~~A~t  423 (493)
T PRK13580        359 GARLVTGG--TDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSD-------------PNGAWYTSGIRLGTPALT  423 (493)
T ss_pred             CCCccCCC--CCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCC-------------CCCCCCCceEEeccchhh
Confidence            77765321  22567777775432  234555665  777654321110             00111247799998873 


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHH
Q psy8850         354 ---TTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       354 ---~~~~~i~~~~~~l~~~~~~~  373 (397)
                         ++++||+++++.|.++++..
T Consensus       424 trg~teedi~~iad~l~~~l~~~  446 (493)
T PRK13580        424 TLGMGSDEMDEVAELIVKVLSNT  446 (493)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHhh
Confidence               46999999999999887644

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.95  E-value=9.5e-26  Score=214.30  Aligned_cols=309  Identities=17%  Similarity=0.069  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhhh-ccCCCEEEE-cCCCChhhHHHHHHHhhC-CcE
Q psy8850          42 AIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFY-KKRGKHIIT-VQTEHKSVLDSIRKLEND-GFR  112 (397)
Q Consensus        42 ~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~~-~~~g~~vl~-~~~~~~s~~~~~~~~~~~-g~~  112 (397)
                      ...++|+++++++    |  +++++|++|+|+++|+.+++.++.... .++||.|++ ..|+|+.+.......... +..
T Consensus        75 G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~  154 (416)
T PRK09440         75 GKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYR  154 (416)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecc
Confidence            3456666666665    3  678899999999999999999887200 015789999 699999987754432111 222


Q ss_pred             EEEeccCC---CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcccc---c
Q psy8850         113 VTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDI---N  183 (397)
Q Consensus       113 v~~v~~~~---~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~~---~  183 (397)
                      +..++++.   ...+|+++++  +.++++++++++|+||||.+++   +++|+++|++||++||+|++|+......   +
T Consensus       155 ~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~  232 (416)
T PRK09440        155 PNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSE  232 (416)
T ss_pred             cccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhh
Confidence            22333332   2468999997  4667899999999999999999   5678889999999999999997321111   1


Q ss_pred             cC--cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHH--HHHHHHH
Q psy8850         184 IQ--NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKE  257 (397)
Q Consensus       184 ~~--~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~--~~~~~~~  257 (397)
                      ..  ..+..+++.|++|. +.+|  +|+++++++..+.+......       ...+.+.....++..+++.  +...+.+
T Consensus       233 ~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~~~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~  304 (416)
T PRK09440        233 ATPLWNPNIILCMSLSKL-GLPGVRCGIVIADEEIIEALSNMNGI-------ISLAPGRLGPAIAAEMIESGDLLRLSET  304 (416)
T ss_pred             cCccccCCeEEEeccccc-CCCcceEEEEeCCHHHHHHHHHHHHH-------hccCCCcHHHHHHHHHhccchHHHHHHH
Confidence            11  12355888999994 4334  78888876655544332211       1112333344444445532  1122223


Q ss_pred             -HHHHHHHHHHHHHHHHhhhcCc--EEEeCCCCCCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCCCCCChhh
Q psy8850         258 -ELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTSASLEPSY  330 (397)
Q Consensus       258 -~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~  330 (397)
                       +.+.++++++.+++.|.+.+++  +.+..+.+   +.++++.++.  .+..++...+.  ||.+.+|..|.++...   
T Consensus       305 ~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~g---g~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~---  378 (416)
T PRK09440        305 VIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEG---AIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDE---  378 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCeEEecCCC---ceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCcc---
Confidence             4566777778888888774443  34344433   4566777764  45667777665  8999999766541100   


Q ss_pred             HHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         331 VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       331 ~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                             ......+++||+++.  +.+++++++++|++++++.++
T Consensus       379 -------~~~~~~~~iRis~~~--~~~~l~~~i~~l~~~~~~~~~  414 (416)
T PRK09440        379 -------DWPHAHQCIRMNYVQ--DDEEIEKGIAILAEEVEKAYA  414 (416)
T ss_pred             -------ccCCcCceEEEEecC--CHHHHHHHHHHHHHHHHHHhh
Confidence                   000013689999984  689999999999999877554

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.95  E-value=1.6e-25  Score=205.51  Aligned_cols=304  Identities=16%  Similarity=0.100  Sum_probs=227.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCc-
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGF-  111 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~--i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~-  111 (397)
                      .+..+.+.+.++++.|+++++.+.+.  +++++|||.++++++.+++.   ++|++|++..  ..+.....+.+...|. 
T Consensus        33 Rs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~---~~g~~vLv~g--~FG~r~~~eia~~~g~~  107 (374)
T TIGR01365        33 RSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG---CRGVDVLAWE--SFGKGWVTDVTKQLKLP  107 (374)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC---CCCCeEEEEC--HHHHHHHHHHHHhcCCC
Confidence            36788899999999999999985443  67799999999999999883   3677888743  3333323245555588 


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++..+..+....+++++++.    + +.|+++|..++||+..|++++...+  +++++++|++.++|..++++.  ++|+
T Consensus       108 ~v~~l~~~~g~~~~~~~ve~----~-~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d--~iDv  178 (374)
T TIGR01365       108 DVRVLEAEYGKLPDLKKVDF----K-NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH--KLDV  178 (374)
T ss_pred             CcEEEcCCCCCCCCHHHcCC----C-CCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh--HCcE
Confidence            47888777666789999973    1 2367999999999999997665322  589999999999999999888  5999


Q ss_pred             EEecccc-ccCCCCceEEEEecCCCCccccc--------cccCCc--------cccccCCCCchhHHHHHHHHHHHHHH-
Q psy8850         192 MSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ--------IHGGGH--------EYGLRSGTLATHQIVGMGEAFRLARI-  253 (397)
Q Consensus       192 ~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~l~~al~~~~~-  253 (397)
                      ++.|.+| +.+|+|+++++++++.+++.+..        +.....        ..+..+.||++..+.++..+++++.+ 
T Consensus       179 ~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~e  258 (374)
T TIGR01365       179 VTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESI  258 (374)
T ss_pred             EEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHc
Confidence            9999999 77899999999998876654321        111000        01345667777788888888887755 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC-CCCCCCceEEEEecC--C-----C-----hHHHHHHhC--CcEecc
Q psy8850         254 -EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNF--I-----E-----GESLLMAIK--DIAVSS  317 (397)
Q Consensus       254 -~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~-----~-----~~~~~~~l~--~i~~~~  317 (397)
                       |++++.++++++++.+++++++ ++.+.+... +..+.+..+.+.++.  .     +     ..++...++  |+.+.+
T Consensus       259 gGle~~~~Rh~~~a~~l~~~l~~-lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~  337 (374)
T TIGR01365       259 GGLKPLIARADDNLAVLEAFVAK-NNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDI  337 (374)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHH-CCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEec
Confidence             6999999999999999999999 654666653 344556666677643  2     2     466776765  787876


Q ss_pred             cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         318 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      |...                   ..+..+||+....++.+||+.+++.|.=+.++
T Consensus       338 G~~~-------------------~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~  373 (374)
T TIGR01365       338 GSYR-------------------DAPSGLRIWCGATVEKSDLECLCPWLDWAFAL  373 (374)
T ss_pred             cccc-------------------cCCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence            6421                   12478999999999999999999999876653

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.95  E-value=2.8e-25  Score=209.17  Aligned_cols=315  Identities=16%  Similarity=0.150  Sum_probs=210.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV  113 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v  113 (397)
                      +++...+....+++.++++.|.+  ..++++||+.|+..++.++.    ++||+|+++++.|+++...+.. +...|+++
T Consensus        58 y~r~~~p~~~~Le~~lA~leg~~--~al~~~sG~~Ai~~al~~ll----~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v  131 (431)
T PRK08248         58 YTRIMNPTTDVFEKRIAALEGGI--GALAVSSGQAAITYSILNIA----SAGDEIVSSSSLYGGTYNLFAHTLPKLGITV  131 (431)
T ss_pred             eECCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEccCchhhHHHHHHHHHHhCCEEE
Confidence            33444567888999999999965  68889999999999998887    7999999999999887766654 34459999


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS  193 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~  193 (397)
                      +.++..     |++++++++++++++|++++++||||.+.|+++|.++|+++|+++|+|++++.+....++ .+++|+++
T Consensus       132 ~~vd~~-----d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl-~~gaDivv  205 (431)
T PRK08248        132 KFVDPS-----DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPI-EHGADIVV  205 (431)
T ss_pred             EEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChh-HcCCCEEE
Confidence            999864     899999999999999999999999999999999999999999999999999855443333 46899999


Q ss_pred             eccccccCCCC--ceEEEEecCCCCcc-ccc---ccc----C------Cc-------------cccccCCCCchhHHHHH
Q psy8850         194 FSAHKIYGPKG--IGALYIRRNPRTRI-EAQ---IHG----G------GH-------------EYGLRSGTLATHQIVGM  244 (397)
Q Consensus       194 ~s~~K~~g~~g--~g~~~~~~~~~~~~-~~~---~~~----~------~~-------------~~~~~~~~~~~~~~~~l  244 (397)
                      .|++|++|+.|  +|.+++........ ...   ...    +      ..             .........+....+.+
T Consensus       206 ~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~  285 (431)
T PRK08248        206 HSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLL  285 (431)
T ss_pred             EcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999666555  55555542211000 000   000    0      00             00000011111111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCC--ChHHHH
Q psy8850         245 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI--EGESLL  307 (397)
Q Consensus       245 ~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~~  307 (397)
                      ...++    .++.+.++..+++..+.+.|++ .|.+..+.-|.               ...++++.|.+++-  ....+.
T Consensus       286 ~rgl~----tl~~R~~~~~~nA~~la~~L~~-~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~  360 (431)
T PRK08248        286 LQGLE----TLHLRMERHSENALAVAKFLEE-HEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLI  360 (431)
T ss_pred             hcCcC----cHHHHHHHHHHHHHHHHHHHHh-CCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHH
Confidence            11111    2556788889999999999998 77764332211               23467888888642  134566


Q ss_pred             HHhC--CcEecccCccCC----CCCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         308 MAIK--DIAVSSGSACTS----ASLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       308 ~~l~--~i~~~~g~~~~~----~~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +.|+  .+..+-|...+.    ..+.+    ....+..|+.+    +.||||++.    |+.|.+++.|.++++..+
T Consensus       361 ~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~----~liRlsvGl----Ed~~dL~~Dl~~Al~~~~  429 (431)
T PRK08248        361 DSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTP----GLVRLSVGT----EAIDDILDDLRQAIRQSQ  429 (431)
T ss_pred             HhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhhh
Confidence            6665  444444544332    22211    12234566664    899999997    677778888887776544

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1.5e-25  Score=213.14  Aligned_cols=293  Identities=14%  Similarity=0.089  Sum_probs=194.4

Q ss_pred             CcEEEeCChhHHHHHHHHHhHh-hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcC
Q psy8850          59 REIIWTSGATESNNLAIKGAAH-FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS  135 (397)
Q Consensus        59 ~~i~~~~g~t~a~~~~l~~l~~-~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~  135 (397)
                      ++|++|+|+++|+..++.++.. ...++||+|++++|.|+.+....... ..|.+++.++.+  .++.+|++++++++++
T Consensus       162 ~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~-g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~  240 (527)
T PRK09275        162 FDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELP-RYDLEVVHINADEENEWQYPDSELEKLRDP  240 (527)
T ss_pred             CeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHc-CCCeEEEEeecCcccCCCCCHHHHHhhcCC
Confidence            3799999999999999886321 12289999999999999998776654 225566666654  3467899999999999


Q ss_pred             CceEEEEecccCccccccc---HHHHHHHHHh--cCcEEEEecccccCcc-ccccC--cccccEEEeccccccCCCC--c
Q psy8850         136 DTILVSVMLVNNEIGVIQP---ILEIGELCRS--KGVIFHCDAAQAVGKI-DINIQ--NYKVDLMSFSAHKIYGPKG--I  205 (397)
Q Consensus       136 ~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~--~gi~livD~a~~~~~~-~~~~~--~~~~d~~~~s~~K~~g~~g--~  205 (397)
                      ++++|++++|+||||.+++   +++|+++|++  +|++||+|++|+.... ...+.  .....+++.|++|.+|.+|  +
T Consensus       241 ~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~Rl  320 (527)
T PRK09275        241 SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRL  320 (527)
T ss_pred             CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHH
Confidence            9999999999999999999   6778888964  5999999999973221 11111  1135688999999777666  7


Q ss_pred             eEEEEecC-----CCCccc-------------------------cccccCCccccccCCCCchhHHHH-----HHHHHHH
Q psy8850         206 GALYIRRN-----PRTRIE-------------------------AQIHGGGHEYGLRSGTLATHQIVG-----MGEAFRL  250 (397)
Q Consensus       206 g~~~~~~~-----~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~-----l~~al~~  250 (397)
                      |+++++++     .+..+.                         ...........+...+.+.++..+     +.++++.
T Consensus       321 G~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~  400 (527)
T PRK09275        321 GVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDE  400 (527)
T ss_pred             hhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC
Confidence            99988865     221110                         000000000111122333333332     2233443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-----------------CChHHHHHHhC--
Q psy8850         251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGESLLMAIK--  311 (397)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l~--  311 (397)
                      ..+..+..++.++++++.+.+.|..   .+....+ ..  ...+++.+..                 .++.++...|.  
T Consensus       401 ~~~~~~~~~~~~~~Rr~~l~~~Lg~---~~~~~~p-~g--~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e  474 (527)
T PRK09275        401 EDAYKKAMKDIIRRRYKALYEGLGL---PEPEDPN-NA--AYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEE  474 (527)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHcCC---CCcCCCC-Ce--eEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhc
Confidence            3445677788888888888887721   1111111 11  2333343321                 24566666665  


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELS  377 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~  377 (397)
                       +|.+.||..|..                  .++++|+|+.. .+++++.++.++|.+++.++.+..
T Consensus       475 ~gV~v~PG~~Fg~------------------~~~~vRis~a~-~~~~~~~~~~~rl~~~l~~y~~~~  522 (527)
T PRK09275        475 TGVVLLPGGGFGG------------------PEWSVRVSLAN-LNEEDYAKIGKAIRKLLDEYYEEY  522 (527)
T ss_pred             CCEEEeCchhhCC------------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence             899999976643                  13789999975 478999999999999998887643

>PLN02242 methionine gamma-lyase

Probab=99.95  E-value=1.4e-25  Score=210.58  Aligned_cols=312  Identities=14%  Similarity=0.118  Sum_probs=214.0

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hh-CC
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-EN-DG  110 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~-~g  110 (397)
                      +.+++...+...++++.+++++|.+  .+++++||++|+.+++.++.    ++||+|+++.+.|+++...+... .+ .|
T Consensus        68 ~~Y~r~~~Pt~~~LE~~lA~l~g~~--~~l~~~sG~~Ai~~al~al~----~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G  141 (418)
T PLN02242         68 YIYSRHFNPTVLNLGRQMAALEGTE--AAYCTASGMSAISSVLLQLC----SSGGHVVASNTLYGGTHALLAHFLPRKCN  141 (418)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCC--eEEEEccHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHhhhhccC
Confidence            4445555678899999999999987  57789999999999999988    89999999999998887765432 22 38


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV  189 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~  189 (397)
                      .+++.++.+     |++++++++++ ++++|++++++||||.+.++++|+++|+++|++||+|++|+...  .+...++.
T Consensus       142 ~~~~~~d~~-----d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~--~~~~~~g~  214 (418)
T PLN02242        142 ITTTFVDIT-----DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMV--LSPARLGA  214 (418)
T ss_pred             ceEEEcCCC-----CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccC--CCHHHcCC
Confidence            888777654     89999999988 59999999999999999999999999999999999999997433  23334578


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       190 d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      |+++.|++|.+++.|   .|+++.+++....+.....+.    ....|.......+.+ .+..  ...+..+.+++.+++
T Consensus       215 divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~----~~~~g~~~~~~~A~l-~~~~--l~tl~~r~~~~~~~a  287 (418)
T PLN02242        215 DVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA----LMLLGPTMNPKVAFE-LSER--LPHLSLRMKEHCRRA  287 (418)
T ss_pred             cEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh----hhccCCCCCHHHHHH-HHcC--CCcHHHHHHHHHHHH
Confidence            999999999554433   488888766555544332110    011122221222222 2221  113455778889999


Q ss_pred             HHHHHHHhhhcCcEEEeCCC-----C-----------CCCCceEEEEecCCC-hHHHHHHhC------CcEecccCccCC
Q psy8850         267 KRLYNGLMESIEEIYINGDM-----N-----------NRIPHNLNISFNFIE-GESLLMAIK------DIAVSSGSACTS  323 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~-~~~~~~~l~------~i~~~~g~~~~~  323 (397)
                      +++.+.|++ . ++.+..+.     .           ...++++.|.+.+.+ ...+.+.++      .+.+..|...+.
T Consensus       288 ~~la~~L~~-~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl  365 (418)
T PLN02242        288 MEYAKRMKE-L-GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVSLGYYETL  365 (418)
T ss_pred             HHHHHHHHh-C-CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHHHHhhcccccceeeecCCCCCce
Confidence            999999999 5 45555331     0           234677888886321 345555555      234445544432


Q ss_pred             C----CCCh----hhHHHhhCCCccccCceEEEeeCCCCCHH-HHHHHHHHHHHHHHHHH
Q psy8850         324 A----SLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEK-EIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       324 ~----~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~-~i~~~~~~l~~~~~~~~  374 (397)
                      .    .+.+    ....+..|+..    +.||||++.    | ++|.+++.|.+++++.+
T Consensus       366 ~~~p~~~~~~~~~~~~~~~~gi~~----~liRlsvGl----E~~~~dli~dl~~al~~~~  417 (418)
T PLN02242        366 MSCSGSSTSSELDPEEKAAAGISP----GLVRMSVGY----TGTLEQRWSQFEKALSAMK  417 (418)
T ss_pred             eeCCCccccccCCHHHHHhcCCCC----CeEEEEecC----CCCHHHHHHHHHHHHHHhh
Confidence            1    1111    11223455554    899999997    5 37778888888776653

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.95  E-value=2.6e-25  Score=208.54  Aligned_cols=313  Identities=14%  Similarity=0.135  Sum_probs=206.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.+++...+...++++.++++.|.+  ..++++||+.|+.+++.++.    ++||+|+++.+.|..+...... +...|+
T Consensus        57 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~~sG~~Al~~~l~~ll----~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~  130 (403)
T PRK07503         57 HFYSRISNPTLALLEQRMASLEGGE--AAVALASGMGAITATLWTLL----RPGDEVIVDQTLYGCTFAFLHHGLGEFGV  130 (403)
T ss_pred             ceeeCCCCchHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHc----CCCCEEEEccCccchHHHHHHHHHhhCCE
Confidence            3444445567889999999999987  35667788899999998876    7999999999999776654433 334599


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      +++.++.+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+.....+ .+++|+
T Consensus       131 ~v~~vd~~-----d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l-~~g~Di  204 (403)
T PRK07503        131 TVRHVDLT-----DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL-ELGADL  204 (403)
T ss_pred             EEEEeCCC-----CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCE
Confidence            99998875     799999999999999999999999999999999999999999999999999865432222 347899


Q ss_pred             EEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR  268 (397)
Q Consensus       192 ~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~  268 (397)
                      +++|++|++++.|   .|+++.+++...+++.....     ......++....+.+...++    .+..+.++..+++..
T Consensus       205 ~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~-----~~~g~~~s~~~a~l~l~~L~----tl~~r~~~~~~na~~  275 (403)
T PRK07503        205 VVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLK-----DMTGAVMSPFDAFLLMRGLK----TLALRMDRHCASAQA  275 (403)
T ss_pred             EEccccccccCCCceeEEEEEcCHHHHHHHHhhhHH-----hCcCCCCCHHHHHHHHcCcc----hHHHHHHHHHHHHHH
Confidence            9999999555433   68887666544444321100     00112222222222223333    344455666778888


Q ss_pred             HHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCC----CCC
Q psy8850         269 LYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS----ASL  326 (397)
Q Consensus       269 l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~----~~~  326 (397)
                      +.+.|++ .|.+..+..|.              ...+.++.|.+++.  ....+.+.++  .....-|...+.    .++
T Consensus       276 ~a~~L~~-~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~l~l~~~~~slG~~~sl~~~~~~~  354 (403)
T PRK07503        276 VAEWLAR-HPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASM  354 (403)
T ss_pred             HHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHHHHHhCCcceeecccCCCCccCcCCCCC
Confidence            8888887 67654332111              12356778887631  1234444444  222233332221    111


Q ss_pred             Ch----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         327 EP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       327 ~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      .+    ....+..|+.+    +.||||++.    |++|.+++.|.++++...+
T Consensus       355 ~h~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~Al~~~~~  399 (403)
T PRK07503        355 THSTYTPEERAEHGISE----GLVRLSVGL----EDVADILADLAQALDACAV  399 (403)
T ss_pred             ccccCCHHHHHhcCCCC----CeEEEEEec----CCHHHHHHHHHHHHHHHHH
Confidence            11    12234555554    899999997    5666677777776665543

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.95  E-value=2.4e-25  Score=207.78  Aligned_cols=298  Identities=12%  Similarity=0.070  Sum_probs=200.3

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeCChhHHHHHHHHHh-Hh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPREIIWTSGATESNNLAIKGA-AH   80 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~---~~~~~i~~~~g~t~a~~~~l~~l-~~   80 (397)
                      .++.+++++.+.... .      .|...    ....++++++++++    |   +++++|++|+|+++++..++..+ . 
T Consensus        41 ~~~~~~~~~~~~~~~-~------~Y~~~----~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~-  108 (364)
T PRK07865         41 VPPVIQEALAAAADA-P------GYPTT----AGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGL-  108 (364)
T ss_pred             CCHHHHHHHHHHHhh-C------CCCCc----cCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcC-
Confidence            357777887665422 1      12211    22344555555554    4   55789999999999999887776 4 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE  157 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~  157 (397)
                         ++||+|+++.|+|+.+...+..+   |.++..++       ++++++   .++++++++++++||||.+++   +++
T Consensus       109 ---~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~-------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~  172 (364)
T PRK07865        109 ---GPGDVVVIPELAYPTYEVGARLA---GATVVRAD-------SLTELG---PQRPALIWLNSPSNPTGRVLGVDHLRK  172 (364)
T ss_pred             ---CCCCEEEECCCCcccHHHHHHhc---CCEEEecC-------ChhhCC---cccceEEEEcCCCCCCCccCCHHHHHH
Confidence               68999999999999998887766   88888774       223332   257899999999999999998   467


Q ss_pred             HHHHHHhcCcEEEEecccccCcc---ccc-cC------cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKI---DIN-IQ------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~---~~~-~~------~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      |+++|+++|++||+|++|+....   +.. +.      ..+..+++.|++|.+|.+|  +|+++.+++....+...... 
T Consensus       173 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~~-  251 (364)
T PRK07865        173 VVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRKH-  251 (364)
T ss_pred             HHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHHHHHHHHh-
Confidence            88889999999999999883221   111 00      1134688999999665444  78888876655554432211 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHH
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGES  305 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (397)
                            .....+.....++..+++. .+.+++.++.+.++++.+.+.|++ . ++.+..+++   +.++++.++ .+..+
T Consensus       252 ------~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~-~~~~~  318 (364)
T PRK07865        252 ------AGMMVPAPVQAAMVAALGD-DAHVREQRERYARRRAVLRPALEA-A-GFRVDHSEA---GLYLWATRG-EDCWD  318 (364)
T ss_pred             ------cCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCCc---cEEEEEeCC-CCHHH
Confidence                  0112333344444445543 234667788889999999999988 4 655544432   334555553 34456


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                      +.+.+.  ||.+.+|..|.+                 ...+++||+++.  +++++++++++|+
T Consensus       319 ~~~~l~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~~--~~~~~~~~~~~l~  363 (364)
T PRK07865        319 TVAWLAERGILVAPGDFYGP-----------------AGAQHVRVALTA--TDERIAAAVERLA  363 (364)
T ss_pred             HHHHHHHCCEEEeCccccCc-----------------CCCCEEEEEecC--CHHHHHHHHHHhh
Confidence            666665  999999865532                 113789999985  6899999998885

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.95  E-value=1.1e-24  Score=203.94  Aligned_cols=338  Identities=14%  Similarity=0.172  Sum_probs=216.7

Q ss_pred             CCCCCC----CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHH
Q psy8850           2 DYSATT----PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG   77 (397)
Q Consensus         2 ~~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~   77 (397)
                      |.+++.    ..+|++++++.+++.++..+.......  |.......++++.++++++.+ +.+++++|. .|+..++.+
T Consensus         2 ~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~--yg~~~~~~~LE~~lA~~~g~e-~al~~~sG~-~a~~~~i~~   77 (392)
T PLN03227          2 NFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGF--YGTIDAHLELEQCMAEFLGTE-SAILYSDGA-STTSSTVAA   77 (392)
T ss_pred             CCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccc--cCChHHHHHHHHHHHHHhCCC-cEEEecCcH-HHHHHHHHH
Confidence            445544    247899999999998744222221111  333458899999999999987 455555555 455577777


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc-----------CCceEEEEeccc
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-----------SDTILVSVMLVN  146 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-----------~~~~~v~~~~~~  146 (397)
                      +.    ++||+|+++++.|+++...+...   +.+++.++.++.  -+++.+.+.+.           .++++|+++.++
T Consensus        78 l~----~~GD~Vl~~~~~h~s~~~~~~l~---~~~~~~~~~~d~--~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~  148 (392)
T PLN03227         78 FA----KRGDLLVVDRGVNEALLVGVSLS---RANVRWFRHNDM--KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLY  148 (392)
T ss_pred             hC----CCCCEEEEeccccHHHHHHHHHc---CCeEEEeCCCCH--HHHHHHHHHhhhhccccccccCCCcEEEEEcCCc
Confidence            76    89999999999999998877544   677777776521  12333333432           358899999999


Q ss_pred             CcccccccHHHHHHHHHhcCcEEEEecccccCccc---------cccC-cccccEEEeccccccCCCCceEEEEecCCCC
Q psy8850         147 NEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID---------INIQ-NYKVDLMSFSAHKIYGPKGIGALYIRRNPRT  216 (397)
Q Consensus       147 ~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~---------~~~~-~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~  216 (397)
                      |++|.+.|++++.++|++||+++|+|++|+++...         +++. ..++|++++|++|.+|+.| |++.++++..+
T Consensus       149 ~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g-g~v~~~~~~~~  227 (392)
T PLN03227        149 KNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG-GMTVGSEEVVD  227 (392)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC-cEEecCHHHHH
Confidence            99999999999999999999999999999855321         1111 1256999999999777764 77777765443


Q ss_pred             ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC-C------CCC
Q psy8850         217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD-M------NNR  289 (397)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~------~~~  289 (397)
                      .+.....+    ..+..+.++....+++ +++....+ .+++.+++.++.+++++.|++  .+.....+ +      ...
T Consensus       228 ~~~~~~~~----~~~~~~~~p~~~~aa~-~al~~~~~-~~~~~~~l~~~~~~l~~~L~~--~~~~~~~~~rg~~~~~~~~  299 (392)
T PLN03227        228 HQRLSGSG----YCFSASAPPFLAKADA-TATAGELA-GPQLLNRLHDSIANLYSTLTN--SSHPYALKLRNRLVITSDP  299 (392)
T ss_pred             HHHHhCcC----ccccCCCCHHHHHHHH-HHHHHHhc-CHHHHHHHHHHHHHHHHHHHh--cCCccccccccccccCCCC
Confidence            33221111    1111112232333444 44543332 356788889999999999975  22221111 0      011


Q ss_pred             CCceEEEEecCCC----------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHH
Q psy8850         290 IPHNLNISFNFIE----------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK  357 (397)
Q Consensus       290 ~~~~~~~~~~~~~----------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~  357 (397)
                      .+.++.+.+.+..          ..++.+.+.  |+.+.+......         ..+   .......||++++..+|++
T Consensus       300 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~---------~~~---~~~P~~~iR~~~~~~~t~e  367 (392)
T PLN03227        300 ISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVK---------KFL---QLVPPPCLRVVANASHTRE  367 (392)
T ss_pred             CCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccC---------CcC---CCCCCceEEEEecCCCCHH
Confidence            2445566664311          125555554  777653211000         000   0111377999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8850         358 EIDFTIKLLKMKVKKL  373 (397)
Q Consensus       358 ~i~~~~~~l~~~~~~~  373 (397)
                      |||+++++|+++++++
T Consensus       368 ei~~~~~~l~~~~~~~  383 (392)
T PLN03227        368 DIDKLLTVLGEAVEAI  383 (392)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999776

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.95  E-value=1.6e-25  Score=209.21  Aligned_cols=307  Identities=14%  Similarity=0.096  Sum_probs=206.0

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~  111 (397)
                      +.+++...+...++++.++++.|.+.  .++++||++|+.+++.++.    ++||+|+++.+.|+++...+... ...|+
T Consensus        53 ~~Y~r~~~p~~~~Le~~lA~~~g~~~--~i~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi  126 (388)
T PRK07811         53 YEYARTGNPTRTALEEQLAALEGGAY--GRAFSSGMAATDCLLRAVL----RPGDHIVIPNDAYGGTFRLIDKVFTRWGV  126 (388)
T ss_pred             CcccCCCCccHHHHHHHHHHHhCCCc--eEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchHHHHHHHHhCcCCCe
Confidence            33444445678899999999999874  3455677899999999987    89999999999999877665543 33488


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      +++.++.     .|++++++++++++++|++++++||+|.+.++++|+++|+++|+++|+|++++.+.....+ ..++|+
T Consensus       127 ~~~~~d~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~-~~gaDi  200 (388)
T PRK07811        127 EYTPVDL-----SDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL-ALGADV  200 (388)
T ss_pred             EEEEeCC-----CCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hhCCcE
Confidence            8888775     3899999999999999999999999999999999999999999999999999876543222 347899


Q ss_pred             EEeccccc-cCCCC--ceEEEEecCCC-CccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHKI-YGPKG--IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K~-~g~~g--~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      +++|++|+ .|+.+  .|+++++++.. ..+.......       ....+....+.....++    .+..+.++..+++.
T Consensus       201 vv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~-------g~~~s~~~a~l~~~~L~----tl~~R~~~~~~na~  269 (388)
T PRK07811        201 VVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGA-------GAVPGPFDAYLTLRGLK----TLAVRMDRHSENAE  269 (388)
T ss_pred             EEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhccC----cHHHHHHHHHHHHH
Confidence            99999994 44433  48887764322 2222211110       01111111111112222    35566777888899


Q ss_pred             HHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCC----CC
Q psy8850         268 RLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS----AS  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~----~~  325 (397)
                      .+.+.|++ .|.+..+.-|.              ...++++.|.+++.  ...++.+.|+  .+...-|...+.    ..
T Consensus       270 ~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~  348 (388)
T PRK07811        270 AVAEFLAG-HPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSA  348 (388)
T ss_pred             HHHHHHHh-CCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcceeeccCCCCcceEeCCcc
Confidence            99999988 77765332222              13467888888631  1345555555  344444443332    11


Q ss_pred             CChhhH-HHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         326 LEPSYV-LRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       326 ~~~~~~-~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +.+... .+..|+.    .+.||||++.    |+.+.+++.|.+++.
T Consensus       349 ~~~~~~~~~~~gi~----~~liR~svGl----E~~~dl~~dl~~al~  387 (388)
T PRK07811        349 MTHASTAGSQLEVP----DDLVRLSVGI----EDVADLLADLEQALG  387 (388)
T ss_pred             cCcccCCHhhcCCC----CCEEEEEeCC----CCHHHHHHHHHHHhh
Confidence            111111 1233444    3899999997    566677777776654

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.95  E-value=3.9e-25  Score=211.24  Aligned_cols=257  Identities=18%  Similarity=0.211  Sum_probs=193.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCC-------------CcEEEeCChhHHHHHHHHHhHhhhc----------------
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADP-------------REIIWTSGATESNNLAIKGAAHFYK----------------   83 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~-------------~~i~~~~g~t~a~~~~l~~l~~~~~----------------   83 (397)
                      +..++...+....+-++++++++..+             ...++|+|||+|+..++.+......                
T Consensus       121 ~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~  200 (522)
T TIGR03799       121 IETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFA  200 (522)
T ss_pred             eecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchh
Confidence            44455666788889999999985211             2378999999999998887664321                


Q ss_pred             ------cCCCEEEEcCCCChhhHHHHHHHhhCCc---EEEEeccCCCCCCCHHHHHHHhc----CCce--EEEEecccCc
Q psy8850          84 ------KRGKHIITVQTEHKSVLDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKIC----SDTI--LVSVMLVNNE  148 (397)
Q Consensus        84 ------~~g~~vl~~~~~~~s~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~i~----~~~~--~v~~~~~~~~  148 (397)
                            .++.+|++++.+|+|..++...+   |+   +++.||++++|.+|+++|+++|.    ++++  +|+.+..++.
T Consensus       201 ~~~~~~~~~~~v~~S~~~H~S~~kaa~~l---glg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~  277 (522)
T TIGR03799       201 ALKHYGYDGLAILVSERGHYSLGKAADVL---GIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTE  277 (522)
T ss_pred             hhhhccCCceEEEECCCchHHHHHHHHHc---CCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcC
Confidence                  12468999999999999888877   55   79999999999999999999986    3444  4444566789


Q ss_pred             ccccccHHHHHHHHHhcCcEEEEecccccCccccc-----cCcc-cccEEEecccc-ccCCCCceEEEEecCCC-Ccccc
Q psy8850         149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQNY-KVDLMSFSAHK-IYGPKGIGALYIRRNPR-TRIEA  220 (397)
Q Consensus       149 tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~-----~~~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~~~-~~~~~  220 (397)
                      +|.+.|+++|+++|+++|+++|+|++++.+....+     +..+ ++|++++|+|| +++|.|+|++++++... ..+..
T Consensus       278 tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~  357 (522)
T TIGR03799       278 TGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEH  357 (522)
T ss_pred             CCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhcc
Confidence            99999999999999999999999999997665433     3433 78999999999 88999999999986422 22221


Q ss_pred             ---ccc--cCC--ccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCc
Q psy8850         221 ---QIH--GGG--HEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH  292 (397)
Q Consensus       221 ---~~~--~~~--~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  292 (397)
                         ++.  +..  ...++. ++.+... +.++.+++.+. .+++++.++..++++++.+.|++ .+++.++.++.   ..
T Consensus       358 ~~~Yl~~~~~~d~~~~~le-gsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~-~~~~el~~~p~---l~  431 (522)
T TIGR03799       358 HAEYILRKGSKDLGSHTLE-GSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQ-QPDFELVTEPE---LC  431 (522)
T ss_pred             CcchhcCCCCCccccceee-cCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEecCCC---cc
Confidence               111  110  112344 3344333 45778888774 58999999999999999999998 89999998754   45


Q ss_pred             eEEEEe
Q psy8850         293 NLNISF  298 (397)
Q Consensus       293 ~~~~~~  298 (397)
                      +++|.+
T Consensus       432 iv~Fr~  437 (522)
T TIGR03799       432 LLTYRY  437 (522)
T ss_pred             EEEEEE
Confidence            666665

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.95  E-value=8.8e-26  Score=210.28  Aligned_cols=307  Identities=13%  Similarity=0.080  Sum_probs=209.5

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcE
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR  112 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~  112 (397)
                      +.+++...+...++++.+++++|.+  ++++++||+.|+..++.++.    ++||+|+++.+.|+++...+..+...|++
T Consensus        45 ~~y~r~~np~~~~lE~~lA~l~g~~--~~l~~~sG~~Ai~~~l~~ll----~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~  118 (385)
T PRK08574         45 LKYSREENPTLRPLEEALAKLEGGV--DALAFNSGMAAISTLFFSLL----KAGDRVVLPMEAYGTTLRLLKSLEKFGVK  118 (385)
T ss_pred             ceEECCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHhhccCcE
Confidence            4445555677889999999999975  67788999999999998887    79999999999999998887665445888


Q ss_pred             EEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         113 VTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       113 v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++.++      +|++++++++++ ++++|++++++||+|.+.|+++|+++||++|+++++|++++.+.....+ ..++|+
T Consensus       119 v~~~~------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~GaDi  191 (385)
T PRK08574        119 VVLAY------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-RHGADF  191 (385)
T ss_pred             EEEEC------CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh-hhCCcE
Confidence            87764      368999999998 8999999999999999999999999999999999999999876542222 357899


Q ss_pred             EEecccc-ccCCCC--ceEEEEe-cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      +++|++| +.|+..  .|+++++ ++..+.+.....       ......+....+.+...++    .+..+.++..+++.
T Consensus       192 vv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~-------~~g~~~~p~~a~l~l~~l~----tL~~R~~~~~~na~  260 (385)
T PRK08574        192 VVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR-------RLGTIMQPFEAYLVLRGLK----TLEVRFERQCRNAM  260 (385)
T ss_pred             EEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH-------hcCCCCCHHHHHHHHcccC----cHHHHHHHHHHHHH
Confidence            9999999 555432  3655554 333333322111       0011222222222223333    24556677777888


Q ss_pred             HHHHHHhhhcCcEEEeCCCC----------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCC----
Q psy8850         268 RLYNGLMESIEEIYINGDMN----------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS----  323 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~----  323 (397)
                      ++.+.|++ .|.+..+.-|.                ...++++.|.+++.  ...++.+.|+  .+...-|...+.    
T Consensus       261 ~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~~  339 (385)
T PRK08574        261 AIAEFLSE-HPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSLGGVESLATYP  339 (385)
T ss_pred             HHHHHHHc-CCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcCCcceEccCCCCCcceeeCC
Confidence            88889987 77654332211                12467888888631  1345555555  344444544332    


Q ss_pred             CCCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         324 ASLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       324 ~~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ..+.+    ....+..|+.+    +.||||++.    |+.|.+++.|.+++++
T Consensus       340 ~~~~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dli~dl~~al~~  384 (385)
T PRK08574        340 VKSAASPIPEEDRKALGITE----DLVRLSVGL----EDVEDLIEDLDQALGS  384 (385)
T ss_pred             CcCCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhc
Confidence            12211    12234556554    899999997    6677777777777653

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.95  E-value=3.3e-26  Score=211.88  Aligned_cols=308  Identities=18%  Similarity=0.130  Sum_probs=203.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .+|+.+++++.+.....        .  .+.......++++.+++++|  ++++++++||++|+.+++.++.    ++|+
T Consensus         9 ~~~~~v~~a~~~~~~~~--------~--~~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~----~~gd   72 (338)
T cd06502           9 GPTPEMLEAMAAANVGD--------D--VYGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHT----QPGG   72 (338)
T ss_pred             CCCHHHHHHHHhcccCC--------c--ccCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhc----CCCC
Confidence            47889999998765321        0  11123467889999999999  4578899999999999999887    7899


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-------CceEEEEecccCcccc--cccHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-------DTILVSVMLVNNEIGV--IQPILEI  158 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~~~~~tG~--~~~l~~i  158 (397)
                      +|++++++|.+...........|.+++.++.+. +.+|++++++++++       ++++|++++++|++|.  ..++++|
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i  151 (338)
T cd06502          73 SVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAI  151 (338)
T ss_pred             eEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHH
Confidence            999999999876543211111399999999865 67999999999975       7899999999997443  2346789


Q ss_pred             HHHHHhcCcEEEEecccccCc-----cccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccC
Q psy8850         159 GELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS  233 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (397)
                      +++|++||+++|+|++|..+.     .+......++|+++.|+||++|.+|.++++.+++..+.+.......+    . .
T Consensus       152 ~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~-~  226 (338)
T cd06502         152 SALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAG----G-G  226 (338)
T ss_pred             HHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhC----C-C
Confidence            999999999999999875321     11111123678999999997665554555566665555543321100    0 0


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC--hHHHHHHh-
Q psy8850         234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE--GESLLMAI-  310 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l-  310 (397)
                      ...+.....+...+++.  .++.++.+++.++++++.+.|++ ++ +.+...    ..+++.+.++...  ...+.+.+ 
T Consensus       227 ~~~~~~~~~a~~~~L~~--~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~----~~~~~~v~~~~~~~~~~~l~~~l~  298 (338)
T cd06502         227 MRQSGFLAAAGLAALEN--DLWLRRLRHDHEMARRLAEALEE-LG-GLESEV----QTNIVLLDPVEANAVFVELSKEAI  298 (338)
T ss_pred             hhhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHh-cC-CCcccc----cCCeEEEecCCccHHHHHHHHHHH
Confidence            01111222222233331  23456668888889999999988 53 332221    1445555554211  12333332 


Q ss_pred             ---C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         311 ---K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       311 ---~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                         . |+.+.+.                       ..++||++++..++++|++++++++++
T Consensus       299 ~~~~~gi~~~~~-----------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         299 ERRGEGVLFYAW-----------------------GEGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             HhhhCCEEEEec-----------------------CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence               1 4444321                       127899999999999999999999865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.95  E-value=8.3e-25  Score=198.34  Aligned_cols=333  Identities=14%  Similarity=0.067  Sum_probs=236.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCC--CCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCChhHHHHHHHHHh
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGN--PASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGA   78 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--i~~~~g~t~a~~~~l~~l   78 (397)
                      .++++..|++|++++++.+..+.+.  ..-..+..+..+.+.+.++++.++++++.|.+.  ++++.|||.+++++...+
T Consensus         9 ~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nl   88 (364)
T PRK12462          9 SGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNF   88 (364)
T ss_pred             cCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHc
Confidence            4677788999999999888764431  111133345677899999999999999996543  556667999999999999


Q ss_pred             HhhhccCCCEEE-EcCCCChhhHHHHHHHhhCCcEEEEeccC----CCCCCCHHHHHHHhcCCceEEEEecccCcccccc
Q psy8850          79 AHFYKKRGKHII-TVQTEHKSVLDSIRKLENDGFRVTYLKPK----NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        79 ~~~~~~~g~~vl-~~~~~~~s~~~~~~~~~~~g~~v~~v~~~----~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~  153 (397)
                      +    .+|++++ +....+.+... .+.+++.| ++..+...    ....++++++  .+.++.++|++++..+.+|+..
T Consensus        89 l----~~g~~~~~~~~tG~fg~r~-~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~~  160 (364)
T PRK12462         89 S----RPGAAAPEYVTTGYWSRKA-IGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQF  160 (364)
T ss_pred             C----CCCCcEEEEEeCCHHHHHH-HHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCceEec
Confidence            8    6778554 44444545433 34444545 44444321    1233455555  3445688999999999999999


Q ss_pred             cHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc-----c
Q psy8850         154 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----E  228 (397)
Q Consensus       154 ~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----~  228 (397)
                      |     ++.+.+++++|+|.+++++..++++..+  |+++.+.+|.+||+|+++++++++++++..+..+....     .
T Consensus       161 ~-----~~~~~~~~llvvD~sS~~~s~pid~~~~--dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p~~ldy~~~~~  233 (364)
T PRK12462        161 P-----DAAGLPDSPLIADMSSDFMSRPFDVEAY--GMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFRTHVE  233 (364)
T ss_pred             C-----cccccCCCeEEEEcCchhhCCCCChHHc--cEEEeeccccCCCCceEEEEECHHHHhhccccCCchhhHHHHHh
Confidence            7     3344469999999999999999999865  99999999966799999999999887765443221100     1


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC-CCCCCCCceEEEEecCCC-h
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLAR-I--EMKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFNFIE-G  303 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~-~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~  303 (397)
                      ......||++..++++..+++++. +  |++.+.++.+++++.+++.+++ ++++.... .+..+....+.|.+.+.. .
T Consensus       234 ~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~-~~~~~~~~~~~~~RS~mnv~f~~~~~~l~  312 (364)
T PRK12462        234 HRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDA-LNEVIDCHAHRAARSTMNVAFRFRQPRLD  312 (364)
T ss_pred             cCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChhhcCcceEEEEcCCHHHH
Confidence            223456999999999999999984 5  7999999999999999999999 77665443 333343333333333221 2


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+|.+...  |+..-.|.                     ...+.+|+|+.+.++.++++.+++.|+++.++
T Consensus       313 ~~f~~~a~~~gl~~lkGh---------------------r~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~  362 (364)
T PRK12462        313 TLFKEQSTEAGFCGLSGH---------------------RSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR  362 (364)
T ss_pred             HHHHHHHHHCCCccccCC---------------------cccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence            34444443  55444442                     22366999999999999999999999998765

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.95  E-value=1.6e-25  Score=209.59  Aligned_cols=303  Identities=15%  Similarity=0.124  Sum_probs=208.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEEE
Q psy8850          36 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVT  114 (397)
Q Consensus        36 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v~  114 (397)
                      ++...+...++++.++++.|.+  +.++++||+.|+..++.++.    ++||+|+++...|+.+...... +...|.+++
T Consensus        65 ~r~~~p~~~~le~~lA~l~g~~--~al~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~  138 (403)
T PRK07810         65 SRYGNPTVSMFEERLRLIEGAE--ACFATASGMSAVFTALGALL----GAGDRLVAARSLFGSCFVVCNEILPRWGVETV  138 (403)
T ss_pred             eCCCCchHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHHHHh----CCCCEEEEccCCcchHHHHHHHHHHHcCcEEE
Confidence            3344456889999999999976  68888999999999988887    7999999999888776655543 344599999


Q ss_pred             EeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEe
Q psy8850         115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF  194 (397)
Q Consensus       115 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~  194 (397)
                      .++.+     |++++++++++++++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+..... ...++|++++
T Consensus       139 ~vd~~-----d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~-~~~gaDivv~  212 (403)
T PRK07810        139 FVDGE-----DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRG-LPLGADVVVY  212 (403)
T ss_pred             EECCC-----CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCCh-hhcCCcEEEc
Confidence            99754     89999999999999999999999999999999999999999999999999986654322 2448999999


Q ss_pred             ccccccCCCC---ceEEEEecCCCC-ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         195 SAHKIYGPKG---IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY  270 (397)
Q Consensus       195 s~~K~~g~~g---~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~  270 (397)
                      |++|++++.|   .|+++.+++... .+......       ....++....+.+...++    .+..+.++..+++.++.
T Consensus       213 S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~-------~g~~~s~~~a~l~l~~L~----tl~~R~~~~~~~a~~~a  281 (403)
T PRK07810        213 SGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH-------TGPALSAFNAWVLLKGLE----TLALRVRHSNASALRIA  281 (403)
T ss_pred             cCCceecCCcCceeEEEEeChHHHHHHHHHHHHH-------hCCCCCHHHHHHHHhccC----cHHHHHHHHHHHHHHHH
Confidence            9999555444   488887765332 22221111       111233333333333444    34556777788888888


Q ss_pred             HHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC---C---hHHHHHHhC--CcEecccCccC----CC
Q psy8850         271 NGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI---E---GESLLMAIK--DIAVSSGSACT----SA  324 (397)
Q Consensus       271 ~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~---~---~~~~~~~l~--~i~~~~g~~~~----~~  324 (397)
                      +.|++ .|.+..+.-|.              ...++++.|.+++.   .   ..++.+.|+  .+...-|...+    |.
T Consensus       282 ~~L~~-~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~  360 (403)
T PRK07810        282 EFLEG-HPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAKSLITHPA  360 (403)
T ss_pred             HHHhc-CCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEeccCCCCcceeeCCC
Confidence            88888 77765443211              13356788888641   1   245666665  33444443332    22


Q ss_pred             CCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         325 SLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       325 ~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .+.+    .......|+.+    +.+|||++.    |+++.+++.|.+++
T Consensus       361 ~~~h~~~~~~~~~~~gi~~----~lvR~svGl----E~~~dli~dl~~Al  402 (403)
T PRK07810        361 TTTHRAMGPEGRAAIGLGD----GVVRLSVGL----EDTDDLIADLDRAL  402 (403)
T ss_pred             ccccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHhh
Confidence            2111    12233556554    899999997    66777777777654

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.95  E-value=5.2e-25  Score=200.45  Aligned_cols=314  Identities=19%  Similarity=0.161  Sum_probs=229.9

Q ss_pred             CHHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850          10 DPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +|.+++++.+.+..+. +-+.   ...-....+...++++.|++++|.+  ..++.+||-.|+..++.++.    +++|.
T Consensus        55 ~~~~~~a~~~~~~~~g~g~~g---sR~i~G~~~~h~~LE~~lA~f~g~e--~al~f~SGy~AN~~~i~~l~----~~~dl  125 (388)
T COG0156          55 HPELIEAAKAAIRRYGVGAGG---SRLISGTSDLHVELEEELADFLGAE--AALLFSSGFVANLGLLSALL----KKGDL  125 (388)
T ss_pred             CHHHHHHHHHHHHHhCCCCCC---cCcccCCcHHHHHHHHHHHHHhCCC--cEEEEcccchhHHHHHHHhc----CCCcE
Confidence            6789999999998843 2222   2222344678999999999999998  34444555579999999998    78999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHHH
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELC  162 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l~  162 (397)
                      |+.....|.|....++..   +.+++.+..+     |+++||+.+.+      +.++|+++.+.++.|.+.|+++|++++
T Consensus       126 i~~D~lnHASiidG~rls---~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~  197 (388)
T COG0156         126 IFSDELNHASIIDGIRLS---RAEVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELA  197 (388)
T ss_pred             EEEechhhhhHHHHHHhC---CCcEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHH
Confidence            999999999999888876   8888888765     89999999976      368999999999999999999999999


Q ss_pred             HhcCcEEEEecccccCcccc---------ccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccC
Q psy8850         163 RSKGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS  233 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~~~---------~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (397)
                      ++||+++++|++|+.|..-.         .+..-.+|++++|++|.+|..| |++.++....+.+......    .-| +
T Consensus       198 ~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G-g~v~g~~~~~d~L~~~ar~----~if-S  271 (388)
T COG0156         198 EKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG-GYIAGSAALIDYLRNRARP----FIF-S  271 (388)
T ss_pred             HHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC-ceeeCcHHHHHHHHHhCCc----eec-c
Confidence            99999999999999776532         2222246899999999878765 8988887665554333211    112 2


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC-
Q psy8850         234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK-  311 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-  311 (397)
                      ..++....++..++++.+.+ ...+++++.++..++++.+..  .++.+....    ..++.+.+.+ ....++...|. 
T Consensus       272 talpP~~aaa~~~al~~l~~-~~~~r~~L~~~~~~~~~~~~~--~~~~~~~s~----s~I~pv~~gd~~~a~~~s~~l~~  344 (388)
T COG0156         272 TALPPAVAAAALAALRILEE-GPERRERLQELAAFFRSLLKA--LGLVLLPSE----SPIIPVILGDEERALEASRALLE  344 (388)
T ss_pred             CCCCHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHh--cCCccCCCC----CCeeeeEeCCHHHHHHHHHHHHH
Confidence            24445555666688887764 367788888889998866655  454443222    3454555543 23445555555 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                       ||.+.+-....                .+.+...||++++..+|++||++++++|.++
T Consensus       345 ~Gi~v~~i~~PT----------------Vp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         345 EGIYVSAIRPPT----------------VPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             CCeeEeeecCCC----------------CCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence             66666432221                2344578999999999999999999999864

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.95  E-value=6.3e-25  Score=206.09  Aligned_cols=283  Identities=23%  Similarity=0.269  Sum_probs=222.3

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++.+++...+++...+....++++.     .+.......++-.+++++++.+.+ ...+|+|||+|+.+++.+....+.+
T Consensus        71 ~~~~~~~a~~~~~~~~~~nl~d~~~-----~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~  145 (460)
T COG0076          71 PTRVPPVAAELLVSALNKNLGDPDE-----SPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRK  145 (460)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCccc-----ChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHH
Confidence            4456778888888888876665544     335567788899999999999633 5999999999999999987765521


Q ss_pred             -C---------CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceE--EEEecccCcccc
Q psy8850          85 -R---------GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTIL--VSVMLVNNEIGV  151 (397)
Q Consensus        85 -~---------g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~--v~~~~~~~~tG~  151 (397)
                       .         ..+|+++...|.|+.+++..+   |+....++.++ +..+|+++++++|.+++..  |+.+.+++++|.
T Consensus       146 ~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~l---G~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~  222 (460)
T COG0076         146 RALAESGKPGGKPNIVCSETAHFSFEKAARYL---GLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGS  222 (460)
T ss_pred             HhhhcccccCCCCeEEecCcchhHHHHHHHHh---CCCceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCc
Confidence             1         237999999999999999999   99999999987 7899999999999998887  999999999999


Q ss_pred             cccHHHHHHHHHhcCcEEEEecccccCcccc-------ccCcccccEEEecccc-ccCCCCceEEEEecC-CCCcc---c
Q psy8850         152 IQPILEIGELCRSKGVIFHCDAAQAVGKIDI-------NIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRI---E  219 (397)
Q Consensus       152 ~~~l~~i~~l~~~~gi~livD~a~~~~~~~~-------~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~~~~---~  219 (397)
                      +.|+++|.++|+++++++|||+|++....++       ++..-++|+++.++|| .+.|.|+|+++.+++ ...+.   .
T Consensus       223 iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~  302 (460)
T COG0076         223 IDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFA  302 (460)
T ss_pred             cCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcc
Confidence            9999999999999999999999999666533       2222379999999999 678999999999987 33332   1


Q ss_pred             cccccC-CccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEE
Q psy8850         220 AQIHGG-GHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS  297 (397)
Q Consensus       220 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  297 (397)
                      ..+.++ .....-..++.+....+++...+..+ .+|+.++.++..++++++.+.|++ .+.+.+..++.   ...+.|.
T Consensus       303 ~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~-~~~~e~~~~p~---l~~V~fr  378 (460)
T COG0076         303 DYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEK-LGDFELVNEPE---LPIVAFR  378 (460)
T ss_pred             cccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHh-CCCcEeecCCc---cceEEEE
Confidence            222222 11122223444455677777777777 689999999999999999999999 77799888764   4566666


Q ss_pred             ecC
Q psy8850         298 FNF  300 (397)
Q Consensus       298 ~~~  300 (397)
                      .++
T Consensus       379 ~~~  381 (460)
T COG0076         379 LKD  381 (460)
T ss_pred             cCC
Confidence            643

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.95  E-value=3.7e-25  Score=210.14  Aligned_cols=289  Identities=14%  Similarity=0.130  Sum_probs=192.5

Q ss_pred             cEEEeCChhHHHHHHHHHhHh-hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--C-----CCCCHHHHHH
Q psy8850          60 EIIWTSGATESNNLAIKGAAH-FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--N-----GLITLSQLEE  131 (397)
Q Consensus        60 ~i~~~~g~t~a~~~~l~~l~~-~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~-----~~~d~~~l~~  131 (397)
                      +|++|+|+++|+..++.++.. ...++||+|++..|.|+.+....... ..|.+++.++.+.  .     +.+|.+++++
T Consensus       157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~-~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~  235 (521)
T TIGR03801       157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELP-RYDFEVVRIKADEMTEDGTHTWQYPDKELEK  235 (521)
T ss_pred             eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHh-cCCcEEEEeecccccccccccCCCCHHHHHH
Confidence            799999999999998887321 11289999999999999988776543 3377888887753  2     6789999999


Q ss_pred             HhcCCceEEEEecccCccccccc---HHHHHHHHHhc--CcEEEEecccccCcc-ccccCc--ccccEEEeccccccCCC
Q psy8850         132 KICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSK--GVIFHCDAAQAVGKI-DINIQN--YKVDLMSFSAHKIYGPK  203 (397)
Q Consensus       132 ~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~--gi~livD~a~~~~~~-~~~~~~--~~~d~~~~s~~K~~g~~  203 (397)
                      +++++++++++++|+||||.+++   +++|+++|++|  +++||+|++|+.... ..++..  .+..+++.|++|.+|.+
T Consensus       236 ~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~  315 (521)
T TIGR03801       236 LRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGAT  315 (521)
T ss_pred             hcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCc
Confidence            99899999999999999999999   56778889986  999999999973221 111111  13568899999977655


Q ss_pred             C--ceEEEEecC-----CCCcc----cccc---------------------ccCC-ccccccCCCCchhHHH-----HHH
Q psy8850         204 G--IGALYIRRN-----PRTRI----EAQI---------------------HGGG-HEYGLRSGTLATHQIV-----GMG  245 (397)
Q Consensus       204 g--~g~~~~~~~-----~~~~~----~~~~---------------------~~~~-~~~~~~~~~~~~~~~~-----~l~  245 (397)
                      |  +|+++++++     .+..+    ...+                     .... .......| .+.++..     ++.
T Consensus       316 G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g-~s~p~Q~q~al~a~~  394 (521)
T TIGR03801       316 GWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAG-LSTPQQVQMALFSLF  394 (521)
T ss_pred             hhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHH
Confidence            6  799888754     11111    0000                     0000 00011122 2333322     333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-----------------CChHHHHH
Q psy8850         246 EAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGESLLM  308 (397)
Q Consensus       246 ~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~  308 (397)
                      ++++......++..+.++++++.+.+.| . + .+... ++.  ....+.+.++.                 .++.++..
T Consensus       395 all~~~~~y~~~~~~~~~~R~~~l~~~L-g-~-~~~~~-~~~--g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~  468 (521)
T TIGR03801       395 ALMDKENAYKAETKDICRRREKLLFRGL-G-L-PLQED-PND--VAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLF  468 (521)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHHHHhc-C-C-CCcCC-CCC--eEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHH
Confidence            3444333456777788888888888887 2 2 11111 111  13344444442                 13456766


Q ss_pred             HhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         309 AIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       309 ~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      .|.   +|.+.||..|..                  .++++|||+.. .++++++++.++|.++++++.+
T Consensus       469 ~L~~e~gV~v~PG~~Fg~------------------~~~~vRisla~-l~~~~~~~~~~rl~~~~~~~~~  519 (521)
T TIGR03801       469 RLAEETGIVLLPGGGFGG------------------PEWSVRVSLAN-LNEYDYAEIGRAIRKILDEYYE  519 (521)
T ss_pred             HHHHhCCEEEeCchhcCC------------------CCCeEEEEecC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            665   899999976653                  12679999975 5789999999999999988765

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK06460 hypothetical protein; Provisional

Probab=99.95  E-value=2.6e-25  Score=206.81  Aligned_cols=309  Identities=16%  Similarity=0.132  Sum_probs=204.7

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHH-HHhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~-~~~~~g  110 (397)
                      .|.+++...+...++++.++++.|.+. .+++ +||++|+..++.++.    ++||+|+++.+.|+.....+. .+...|
T Consensus        36 ~~~y~r~~~p~~~~L~~~lA~l~g~~~-~v~~-~sG~~ai~~~l~al~----~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G  109 (376)
T PRK06460         36 KYRYSREANPTVLELTKKIVELENAEM-GVAF-SSGMGAISTTALALL----KPGNSVLVHRDMFGRSYRFFTDYLKNWG  109 (376)
T ss_pred             CcceeCCCCccHHHHHHHHHHHhCCCc-EEEe-CCHHHHHHHHHHHHh----CCCCEEEEecCCcCcHHHHHHHHHHhhC
Confidence            456677777889999999999999974 4554 666789999998887    799999999887754444333 334449


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      .++..++.+     +.+.+++.+++++++|++++++||||.+.|+++|+++|+++|+++|+|++++.+... .....++|
T Consensus       110 ~~v~~~~~~-----~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~-~~l~~~~d  183 (376)
T PRK06460        110 VNVDASNPG-----SDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQ-KPLELGAD  183 (376)
T ss_pred             cEEEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccC-ChhhcCCC
Confidence            998888765     234566666778999999999999999999999999999999999999999855321 11134689


Q ss_pred             EEEecccccc-CCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKIY-GPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       191 ~~~~s~~K~~-g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      +++.|++|++ |..+  .|+++.+++..+.+......      +.. ..+.  ..+. .+++- .+.++.+.+++.++++
T Consensus       184 ivv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~------~g~-~~~~--~~a~-~~l~~-~~~l~~r~~~~~~n~~  252 (376)
T PRK06460        184 IVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRT------LGT-SLDP--HAAY-LTLRG-IKTLKIRMDVINRNAE  252 (376)
T ss_pred             EEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHh------cCC-CCCH--HHHH-HHHhc-hhhHHHHHHHHHHHHH
Confidence            9999999954 4322  68888776655544432211      111 1111  1111 11111 2345667888889999


Q ss_pred             HHHHHHhhhcCcEEEeCCC--------------CCCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccC----CCC
Q psy8850         268 RLYNGLMESIEEIYINGDM--------------NNRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACT----SAS  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~  325 (397)
                      ++.+.|++ .|.+..+.-|              ....++++.|.+++.  ...++.+.|+  .....-|...+    |.+
T Consensus       253 ~l~~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~  331 (376)
T PRK06460        253 QIAEFLEG-HPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSVISHPAT  331 (376)
T ss_pred             HHHHHHHc-CCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCCCCCceEEeCccc
Confidence            99999998 6765433221              123567888888631  1345555554  23333332222    111


Q ss_pred             CCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         326 LEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       326 ~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.+    .......|+.+    +.||+|++.    ||.|.+++.|.+++..
T Consensus       332 ~~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~  374 (376)
T PRK06460        332 MSHRTLSLEERKIVGITD----SLLRLSVGI----EDVNDLIEDLDRALST  374 (376)
T ss_pred             cccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHh
Confidence            111    12333455554    899999997    6777778888777754

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.95  E-value=6.4e-25  Score=206.36  Aligned_cols=316  Identities=17%  Similarity=0.132  Sum_probs=207.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHH-HHHhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI-RKLENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~-~~~~~~g~  111 (397)
                      +.+++...+....+++.++++.|.+  ..++++||+.|+.+++.++.    ++||+|++++..|.++...+ ..+.+.|+
T Consensus        61 ~~Y~r~~~pt~~~le~~la~l~g~~--~~v~fsSG~~Ai~~al~~ll----~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi  134 (437)
T PRK05613         61 PIYSRLTNPTVEALENRIASLEGGV--HAVAFASGQAAETAAILNLA----GAGDHIVTSPRLYGGTETLFLVTLNRLGI  134 (437)
T ss_pred             ceeeCccChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhc----CCCCEEEECCCccHHHHHHHHHHHHhcCe
Confidence            3444455678899999999999985  45555666688888888776    78999999999999986544 33455599


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++++++ +.   .|+++++++++++|++|+++++.||+|.+.|+++|.++|+++|+++|+|++++.+... +...+++|+
T Consensus       135 ~v~~vd-~~---~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~-~p~~~GaDi  209 (437)
T PRK05613        135 EVTFVE-NP---DDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALV-RPLELGADV  209 (437)
T ss_pred             EEEEEC-CC---CCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCcccccc-ChHHhCCCE
Confidence            999998 32   2799999999999999999999999999999999999999999999999999877653 334568999


Q ss_pred             EEeccccccCCCC--ceEEEE-ecCCC-C------cccccccc-C-----------Cc----------cccccCCCCchh
Q psy8850         192 MSFSAHKIYGPKG--IGALYI-RRNPR-T------RIEAQIHG-G-----------GH----------EYGLRSGTLATH  239 (397)
Q Consensus       192 ~~~s~~K~~g~~g--~g~~~~-~~~~~-~------~~~~~~~~-~-----------~~----------~~~~~~~~~~~~  239 (397)
                      +++|+||++++.|  +|.+++ +++.. .      .+.+.... .           ..          ......+..+..
T Consensus       210 vv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~  289 (437)
T PRK05613        210 VVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPF  289 (437)
T ss_pred             EEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHH
Confidence            9999999666543  344444 33211 0      00000000 0           00          000001111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCC--C
Q psy8850         240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI--E  302 (397)
Q Consensus       240 ~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~  302 (397)
                      ..+.+...++    .+.-+.++..+++..+.+.|++ .|.+..+.-|+               ...++++.|.+++.  .
T Consensus       290 ~a~l~~rgl~----TL~lR~~~~~~nA~~lA~~L~~-hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~  364 (437)
T PRK05613        290 NAWVTAQGLD----TLSLRLERHNENAIKVAEFLNN-HEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDE  364 (437)
T ss_pred             HHHHHHcccC----cHHHHHHHHHHHHHHHHHHHHc-CCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecCCHHH
Confidence            1111111111    3566778889999999999998 77764332211               12466888888631  1


Q ss_pred             hHHHHHHhC--CcEecccCccC----CCCCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACT----SASLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~----~~~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ...+.+.|+  .....-|...+    |..+.+    ....+..|+.+    +.||||++.    |+.|.+++.|.+++++
T Consensus       365 ~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~----~liRlsvGl----E~~~dLi~Dl~~Al~~  436 (437)
T PRK05613        365 AWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQ----ATVRLSVGI----EDIDDIIADLEGGFAA  436 (437)
T ss_pred             HHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            345666665  33333443332    222211    22344667665    899999997    6777778887777653

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.95  E-value=3.2e-25  Score=206.23  Aligned_cols=302  Identities=13%  Similarity=0.048  Sum_probs=199.0

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh---CCCCCcEEEeCChhHHHHHHHHHh-Hhhhc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI---YADPREIIWTSGATESNNLAIKGA-AHFYK   83 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~   83 (397)
                      ++++.+.+++.+.... .      .|.......+...++.+.+.+.+   ++++++|++|+|+++|+..++..+ .    
T Consensus        34 ~~~~~~~~~~~~~~~~-~------~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~----  102 (357)
T TIGR03539        34 PVPPLIRAALAAAADA-P------GYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGL----  102 (357)
T ss_pred             CCCHHHHHHHHHHHhh-C------CCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcC----
Confidence            4567788888765432 1      12111112233334444444433   466789999999999999988876 5    


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      ++||.|++++|+|+++...+...   |.+++.++       +++.++   .+++++|++++++||||.+++   +++|.+
T Consensus       103 ~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~-------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~  169 (357)
T TIGR03539       103 GPGDTVVIPELAYPTYEVGALLA---GATPVAAD-------DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELRAIVA  169 (357)
T ss_pred             CCCCEEEECCCCcHHHHHHHHhc---CCEEeccC-------ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHHHHHH
Confidence            79999999999999998776655   88887764       223222   357899999999999999998   566888


Q ss_pred             HHHhcCcEEEEecccccCc---ccc---ccC----cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcc
Q psy8850         161 LCRSKGVIFHCDAAQAVGK---IDI---NIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE  228 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~---~~~---~~~----~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~  228 (397)
                      +|++||+++|+|++|....   .+.   +..    .....+++.|++|.+|.+|  +|+++++++....+......    
T Consensus       170 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~~~----  245 (357)
T TIGR03539       170 WARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKH----  245 (357)
T ss_pred             HHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHHHhh----
Confidence            8999999999999986211   111   100    1124588899999665445  68888776655554332211    


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLM  308 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (397)
                         ....++.....++.++++. ..++...++.+.++++.+.+.|++ . ++.+..+..   +.++++..+ .+..++.+
T Consensus       246 ---~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~-~-g~~~~~p~~---~~~~~~~~~-~~~~~~~~  315 (357)
T TIGR03539       246 ---AGLMVPAPVQAAMVAALGD-DGHVAEQKARYAARRAQLKPALEK-A-GFRIDHSEA---GLYLWATRG-EDAWDTVD  315 (357)
T ss_pred             ---cccCCCHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHH-c-CCCCcCCCc---cEEEEEECC-CCHHHHHH
Confidence               0112344444444455542 234667788888889999999988 4 555443322   334455544 24556766


Q ss_pred             HhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         309 AIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       309 ~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                      .|.  ||.+.+|..|..                 ...++|||+++.  +.+++++++++|
T Consensus       316 ~l~~~gV~v~pg~~f~~-----------------~~~~~iRis~~~--~~~~i~~~~~~l  356 (357)
T TIGR03539       316 RLAELGILVAPGDFYGP-----------------AGSQHVRVALTA--TDERIAAAVARL  356 (357)
T ss_pred             HHHhCCEEECCccccCC-----------------CCCCeEEEEecC--CHHHHHHHHHhh
Confidence            665  899999865432                 113799999986  689999998876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.95  E-value=9.7e-25  Score=205.06  Aligned_cols=317  Identities=15%  Similarity=0.141  Sum_probs=212.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV  113 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v  113 (397)
                      +++...+....+++.++++.|.+  ..++++||+.|+.+++.++.    ++||+|+++...|.++...+.. +.+.|+++
T Consensus        63 Ysr~~~p~~~~Le~~lA~l~g~~--~av~~sSG~aAi~~al~all----~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v  136 (436)
T PRK07812         63 YTRIMNPTQDVVEQRIAALEGGV--AALLLASGQAAETFAILNLA----GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEV  136 (436)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCC--eEEEEccHHHHHHHHHHHHh----CCCCEEEEeCCcchHHHHHHHHHhhcCeEEE
Confidence            33344456779999999999987  47888899999999999887    7999999999999888776654 34458888


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS  193 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~  193 (397)
                      +.++ +.   .|++++++++++++++|++++++||+|.+.|+++|.++||++|+++|+|++++.+..... ..+++|+++
T Consensus       137 ~~vd-d~---~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~p-l~~GaDivv  211 (436)
T PRK07812        137 SFVE-DP---DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRP-LEHGADIVV  211 (436)
T ss_pred             EEEC-CC---CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCc-hhcCCCEEE
Confidence            8885 22   289999999999999999999999999999999999999999999999999987655332 346899999


Q ss_pred             eccccccCCCC--ceEEEEecCCCCccccccccCCcc-------------------------ccccCCCCchhHHHHHHH
Q psy8850         194 FSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE-------------------------YGLRSGTLATHQIVGMGE  246 (397)
Q Consensus       194 ~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~  246 (397)
                      .|+||++|+.|  +|.+++..................                         .....+.++....+.+..
T Consensus       212 ~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r  291 (436)
T PRK07812        212 HSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQ  291 (436)
T ss_pred             EecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence            99999666555  455555322111000000000000                         000000111111111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCC--ChHHHHHH
Q psy8850         247 AFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI--EGESLLMA  309 (397)
Q Consensus       247 al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~~~~  309 (397)
                      .+    ..+..+.++..+++..+.+.|++ .|.+..+..|+               ...++++.|.+++.  ....+.+.
T Consensus       292 gl----~tL~~R~~~~~~nA~~la~~L~~-~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~  366 (436)
T PRK07812        292 GL----ETLSLRIERHVANAQRVAEFLEA-RDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNA  366 (436)
T ss_pred             Cc----CcHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHh
Confidence            11    13667788889999999999998 77764332221               23467888888641  13466666


Q ss_pred             hC--CcEecccCccC----CCCCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         310 IK--DIAVSSGSACT----SASLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       310 l~--~i~~~~g~~~~----~~~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      |+  .....-|...+    |..+.+    ....+..|+.+    +.||||++.    |++|.+++.|.++++..++
T Consensus       367 l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~----~liRlSvGl----Ed~~dli~dl~~Al~~~~~  434 (436)
T PRK07812        367 LTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTP----GLVRLAVGI----EGIDDILADLEAGFAAAKA  434 (436)
T ss_pred             CCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhhhc
Confidence            66  33344444333    222221    12234566664    899999997    6788888888888887665

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.95  E-value=2.2e-25  Score=204.97  Aligned_cols=271  Identities=17%  Similarity=0.165  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC
Q psy8850          43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG  122 (397)
Q Consensus        43 ~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~  122 (397)
                      ..++++.++++++.++++|++|+|+++++..+... .    .+| .|++.+|+|..+...+...   |.++..++     
T Consensus        49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-l----~~g-~vl~~~p~y~~~~~~~~~~---g~~~~~~~-----  114 (330)
T TIGR01140        49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-L----APG-RVLVLAPTYSEYARAWRAA---GHEVVELP-----  114 (330)
T ss_pred             HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH-h----CCC-eEEEeCCCcHHHHHHHHHc---CCEEEEeC-----
Confidence            48899999999999888999999999999987665 3    466 6999999999988776655   99988887     


Q ss_pred             CCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCccccccC----cccccEEEec
Q psy8850         123 LITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDINIQ----NYKVDLMSFS  195 (397)
Q Consensus       123 ~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~~~~~----~~~~d~~~~s  195 (397)
                        |++++++++ ++++++++++|+||||.++|   +++|+++|+++|++||+|++|.......++.    ..+.++++.|
T Consensus       115 --d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S  191 (330)
T TIGR01140       115 --DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRS  191 (330)
T ss_pred             --CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEe
Confidence              789999988 46789999999999999999   5667888999999999999997333221211    1256799999


Q ss_pred             cccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         196 AHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL  273 (397)
Q Consensus       196 ~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l  273 (397)
                      ++|.+|.+|  +|+++++++....+......         .+.+.....++...++. .+..++..++++.+++.+.+.|
T Consensus       192 ~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~~---------~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L  261 (330)
T TIGR01140       192 LTKFFGLAGLRLGFVVAHPALLARLREALGP---------WTVNGPARAAGRAALAD-TAWQAATRARLAAERARLAALL  261 (330)
T ss_pred             cchhhcCchhhhhheeCCHHHHHHHHhcCCC---------CCchHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHH
Confidence            999776445  69999987765555443211         12233333333344432 1234667889999999999999


Q ss_pred             hhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC
Q psy8850         274 MESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG  351 (397)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~  351 (397)
                      ++ ++.+.+... .   +.++++.++  +..++.+.|.  ||.+.+|..|..                 ...++|||+++
T Consensus       262 ~~-~~~~~~~~~-~---~~f~~~~~~--~~~~l~~~l~~~gi~v~pg~~f~~-----------------~~~~~iRi~~~  317 (330)
T TIGR01140       262 AR-LGGLEVVGG-T---ALFLLVRTP--DAAALHEALARRGILIRDFDNFPG-----------------LDPRYLRFALP  317 (330)
T ss_pred             Hh-CCCceECCC-C---CeEEEEEcC--CHHHHHHHHHHCCEEEEECCCCCC-----------------CCCCEEEEEec
Confidence            99 665554322 2   345556654  3567777776  999999976531                 11378999998


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy8850         352 RFTTEKEIDFTIKLLK  367 (397)
Q Consensus       352 ~~~~~~~i~~~~~~l~  367 (397)
                      .  ..++ ++++++|+
T Consensus       318 ~--~~~~-~~~~~~l~  330 (330)
T TIGR01140       318 T--DEEN-DRLEEALA  330 (330)
T ss_pred             C--HHHH-HHHHHhhC
Confidence            4  3345 88887763

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.95  E-value=6.2e-25  Score=205.21  Aligned_cols=330  Identities=18%  Similarity=0.147  Sum_probs=224.5

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCCE
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGKH   88 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~~   88 (397)
                      +++-++++.+.+.+-+       ...    .+...++++.+++++|.+  ++++++|||+|+.+++.++ .    ++||+
T Consensus        13 ~~~e~~~~~~~l~~~~-------~~~----g~~~~~le~~la~~~g~~--~~v~~~sgt~al~lal~al~~----~~Gd~   75 (379)
T PRK11658         13 GDEELAAVKEVLRSGW-------ITT----GPKNQALEQAFCQLTGNQ--HAIAVSSATAGMHITLMALGI----GPGDE   75 (379)
T ss_pred             CHHHHHHHHHHHHcCC-------ccC----CHhHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcCC----CCCCE
Confidence            4566778887776411       111    235789999999999987  6888999999999999988 5    78999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCc
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV  167 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi  167 (397)
                      |++++++|.++...+...   |.+++.++++. ++.+|++++++++++++++|+..   +++|...|+++|.++|+++|+
T Consensus        76 Viv~~~~~~~~~~~~~~~---G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~~~---~~~G~~~d~~~i~~~a~~~gi  149 (379)
T PRK11658         76 VITPSLTWVSTLNMIVLL---GATPVMVDVDRDTLMVTPEAIEAAITPRTKAIIPV---HYAGAPADLDAIRAIGERYGI  149 (379)
T ss_pred             EEECCCcHHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhcccCCeEEEEe---CCCCCcCCHHHHHHHHHHcCC
Confidence            999999999998777665   99999999985 45689999999999999998744   458999999999999999999


Q ss_pred             EEEEecccccCcccc--ccCcccccEEEecccc-ccCCCCceEEEEe-cCCCCccccccccCCccc--------------
Q psy8850         168 IFHCDAAQAVGKIDI--NIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEY--------------  229 (397)
Q Consensus       168 ~livD~a~~~~~~~~--~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~--------------  229 (397)
                      +||+|++|+.|....  .....+.++++++.+| +.++.| |+++.+ ++...+++.....|....              
T Consensus       150 ~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  228 (379)
T PRK11658        150 PVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEG-GLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAE  228 (379)
T ss_pred             eEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCc-eEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcce
Confidence            999999999876543  2334456777777778 655543 766665 344444443322221100              


Q ss_pred             cccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC--CCCCceEEEEec----CCC
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--NRIPHNLNISFN----FIE  302 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~  302 (397)
                      .+..|..  ..+..+.+++.... +++++..++.+++.+++.+.|.+ ++...+..+..  ....+.+.+.++    +.+
T Consensus       229 ~~~~G~n--~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (379)
T PRK11658        229 VLTPGYK--YNLADINAAIALVQLAKLEALNARRREIAARYLQALAD-LPFQPLSLPAWPHQHAWHLFIIRVDEERCGIS  305 (379)
T ss_pred             eeccccc--cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCcCCCCCCceeEEEEEEEECCccccCC
Confidence            0112221  11334555555443 36888889999999999999988 65433322211  112244455554    235


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhh-C-----CCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRAL-G-----CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~-g-----~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ..++.+.|.  ||..  +.+|.+....+  .++.. .     .........|.+.+....+++|++++++.|++++
T Consensus       306 r~~~~~~L~~~gI~~--~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        306 RDALMEALKERGIGT--GLHFRAAHTQK--YYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             HHHHHHHHHHCCCCC--cccCcCcccCh--hhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence            678888887  6553  33344422221  11110 0     1122235778888888899999999999999875

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.94  E-value=2.4e-25  Score=209.92  Aligned_cols=309  Identities=13%  Similarity=0.112  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcE--EEeCChhHHHHHHHHHhHhhh
Q psy8850          11 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREI--IWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus        11 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i--~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      +.+.+++.+.....        ...+|....+..++|+++++++.      +++++|  ++|+|+++|+.++++++... 
T Consensus        47 ~~l~~a~~~~~~~~--------~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~-  117 (396)
T PRK09257         47 RAVKKAEARLLETE--------TTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRA-  117 (396)
T ss_pred             HHHHHHHHHhcccc--------cCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHh-
Confidence            56777766654321        11122223456777777777752      256666  99999999999998765311 


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-C-CCCCCCHHHHHHHhc---CCceEEEEecccCccccccc---
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-K-NNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP---  154 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~-~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~---  154 (397)
                       ++||+|++.+|+|+.+...+...   |.+++.+|. + +++.+|++++++++.   +++.+++++++|||||.+++   
T Consensus       118 -~pGd~Vlv~~P~y~~~~~~~~~~---g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~  193 (396)
T PRK09257        118 -FPDAKVWVSDPTWPNHRAIFEAA---GLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQ  193 (396)
T ss_pred             -CCCCeEEECCCCcccHHHHHHHc---CCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHH
Confidence             68999999999999999888887   999999997 3 346799999999876   34567778999999999999   


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCccc-----cc---cCc-ccccEEEeccccccCCCC--ceEEEE--ec-CCCCcccc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKID-----IN---IQN-YKVDLMSFSAHKIYGPKG--IGALYI--RR-NPRTRIEA  220 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~-----~~---~~~-~~~d~~~~s~~K~~g~~g--~g~~~~--~~-~~~~~~~~  220 (397)
                      +++|+++|++||++||+|++|......     ..   +.. ....+++.|++|.+++.|  +|++++  .+ +....+..
T Consensus       194 ~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~  273 (396)
T PRK09257        194 WDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLS  273 (396)
T ss_pred             HHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHH
Confidence            567889999999999999998732110     11   111 124588899999766555  788874  21 11111111


Q ss_pred             ccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhcC--cEEEeCCCCCCCCc
Q psy8850         221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESIE--EIYINGDMNNRIPH  292 (397)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~  292 (397)
                      .+...   .....+.++.....++...++.      +.+++++.+++++++++.+.+.|++..+  ++.+..+++   +.
T Consensus       274 ~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~g---g~  347 (396)
T PRK09257        274 QLKAT---IRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQR---GM  347 (396)
T ss_pred             HHHHH---hhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccc---eE
Confidence            11000   0001112233333333333331      2345777889999999999999988222  244443322   33


Q ss_pred             eEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         293 NLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       293 ~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      .+++.+   +...+...+.  +|.+.+.                         +  ||+++. .++++|++++++|+++
T Consensus       348 ~~w~~l---~~~~~~~l~~~~~V~~~p~-------------------------~--ri~~~~-~~~~~i~~~~~~i~~~  395 (396)
T PRK09257        348 FSYSGL---TPEQVDRLREEFGVYAVGS-------------------------G--RINVAG-LNESNIDYVAEAIAAV  395 (396)
T ss_pred             EEecCC---CHHHHHHHHHcCCEEEcCC-------------------------C--eEEEee-CCHHHHHHHHHHHHhh
Confidence            333333   3333333222  6766531                         2  999975 6899999999999875

>PRK05939 hypothetical protein; Provisional

Probab=99.94  E-value=6.2e-25  Score=205.01  Aligned_cols=314  Identities=14%  Similarity=0.098  Sum_probs=206.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcE
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR  112 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~  112 (397)
                      +.+++...+....+++.++++.|.+  ..+++++|+.|+..++.++.    ++||+|+++++.|+++...+..+...|++
T Consensus        39 ~~Y~r~g~p~~~~lE~~la~leg~~--~~v~~ssG~~Ai~~~l~all----~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~  112 (397)
T PRK05939         39 FTYARQGTPTTAALEAKITKMEGGV--GTVCFATGMAAIAAVFLTLL----RAGDHLVSSQFLFGNTNSLFGTLRGLGVE  112 (397)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHc----CCCCEEEECCCccccHHHHHHHHHhcCCE
Confidence            4445555677889999999999987  34556667899999998887    89999999999999887766666666999


Q ss_pred             EEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEE
Q psy8850         113 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM  192 (397)
Q Consensus       113 v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~  192 (397)
                      ++.++..     |+++++++++++|++|++++++||+|.+.|+++|+++||++|+++++|++++.+. .++...+++|++
T Consensus       113 v~~v~~~-----d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~-~~~~~~~gaDiv  186 (397)
T PRK05939        113 VTMVDAT-----DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW-LFRPKDVGASLV  186 (397)
T ss_pred             EEEECCC-----CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc-ccCccccCCEEE
Confidence            9999864     8999999999999999999999999999999999999999999999999997664 334555689999


Q ss_pred             EeccccccCCCC--ceEEEEecCCCCc-----cccccccCC---c----c----ccccCCCCchhHHHHHHHHHHHHHHH
Q psy8850         193 SFSAHKIYGPKG--IGALYIRRNPRTR-----IEAQIHGGG---H----E----YGLRSGTLATHQIVGMGEAFRLARIE  254 (397)
Q Consensus       193 ~~s~~K~~g~~g--~g~~~~~~~~~~~-----~~~~~~~~~---~----~----~~~~~~~~~~~~~~~l~~al~~~~~~  254 (397)
                      +.|++|++++.|  +|.+++.+.....     +........   .    .    .....+..+....+.+...++    .
T Consensus       187 v~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~----t  262 (397)
T PRK05939        187 INSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAE----T  262 (397)
T ss_pred             EecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcC----c
Confidence            999999555444  3444443221110     100000000   0    0    000011111111111111222    3


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC-ChHHHHHHhC--CcEecc
Q psy8850         255 MKEELKRILFLQKRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI-EGESLLMAIK--DIAVSS  317 (397)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~  317 (397)
                      +..+.++..+++..+.+.|++ .|.+..+.-|.              ...+.++.|.+++. +...+...++  .....-
T Consensus       263 l~~R~~~~~~na~~la~~L~~-~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~~~~~~f~~~l~l~~~~~s~  341 (397)
T PRK05939        263 LALRVDRSCSNALALAQFLEA-HPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADGIDCFDFLNRLKLVIKATHL  341 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCHHHHHHHHHhCCcceEccCC
Confidence            555677777788889999988 67654332221              23467888888642 1234555554  233333


Q ss_pred             cCccCCC----CCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         318 GSACTSA----SLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       318 g~~~~~~----~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      |...+..    .+.+    ....+..|+.+    +.||||++.    |++|.+++.|.++++
T Consensus       342 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~----~lvR~svGl----Ed~~dLi~dl~~Al~  395 (397)
T PRK05939        342 GDTRTLVIPVAPTIYYEMGAERRASMGIAD----SLIRVSVGI----EDEADLIADFEQALD  395 (397)
T ss_pred             CCCCeeeecCcccccccCCHHHHHhcCCCC----CeEEEEeCC----CCHHHHHHHHHHHHh
Confidence            4333221    1111    11223455554    899999997    577778888877764

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.94  E-value=6.3e-24  Score=210.93  Aligned_cols=309  Identities=12%  Similarity=0.102  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc----cCCCEEEEcCCCChhhHHHHHHHhhCCcEEE
Q psy8850          39 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK----KRGKHIITVQTEHKSVLDSIRKLENDGFRVT  114 (397)
Q Consensus        39 ~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~----~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~  114 (397)
                      ..+.+.+++++|++++|.+. .-+..++|++|..+.+.++...+.    .++++|+++...|+++-.++...   |++++
T Consensus       528 ~lq~i~elq~~l~eltGmd~-~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~---G~~Vv  603 (939)
T TIGR00461       528 YQELIAQLEKWLCSITGFDA-ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMA---GMQVV  603 (939)
T ss_pred             HHHHHHHHHHHHHHHHCCCC-cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHC---CCEEE
Confidence            56889999999999999993 334445666666666666543221    23578999999999998777776   99999


Q ss_pred             EeccCCCCCCCHHHHHHHhcC---CceEEEEecccCccccccc-HHHHHHHHHhcCcEEEEecccccCccc-cccCcccc
Q psy8850         115 YLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP-ILEIGELCRSKGVIFHCDAAQAVGKID-INIQNYKV  189 (397)
Q Consensus       115 ~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~-l~~i~~l~~~~gi~livD~a~~~~~~~-~~~~~~~~  189 (397)
                      .+|++++|.+|+++|++++++   ++++|++++++| +|.+.| +++|+++||++|.++++|+++..+... .+...+++
T Consensus       604 ~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~Ga  682 (939)
T TIGR00461       604 PVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGA  682 (939)
T ss_pred             EeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCC
Confidence            999999999999999999974   899999999998 788877 999999999999999999999764433 34466799


Q ss_pred             cEEEecccc-cc-----CCCCceEEEEecCCCCcccccccc----C-Cccc--cccC--CCCchhHHHHHHHHHHHH-HH
Q psy8850         190 DLMSFSAHK-IY-----GPKGIGALYIRRNPRTRIEAQIHG----G-GHEY--GLRS--GTLATHQIVGMGEAFRLA-RI  253 (397)
Q Consensus       190 d~~~~s~~K-~~-----g~~g~g~~~~~~~~~~~~~~~~~~----~-~~~~--~~~~--~~~~~~~~~~l~~al~~~-~~  253 (397)
                      |++++|.|| ++     |++|+|++.+++++...+.....+    . +...  +...  .+.+.......+..+..+ .+
T Consensus       683 Di~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~  762 (939)
T TIGR00461       683 DVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNE  762 (939)
T ss_pred             CEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHH
Confidence            999999999 76     566679999997644333211110    0 0011  1111  122222233334455544 56


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC-CCCCCceEEEEec------CCChHHHHHHhC--CcEecccCccCCC
Q psy8850         254 EMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN------FIEGESLLMAIK--DIAVSSGSACTSA  324 (397)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~l~--~i~~~~g~~~~~~  324 (397)
                      |+.+..+....++.++.++|++ ..  .+..+. .....+-+.++++      +.+..++.++|.  |+..  +....| 
T Consensus       763 GL~~~a~~ailnAnYl~~rL~~-~~--~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~ha--pt~~~p-  836 (939)
T TIGR00461       763 GLPKASVVAILNANYMATRLKD-HY--PILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHA--PTLSFP-  836 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-cC--cccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeec--cccCCc-
Confidence            7899999999999999999987 32  333221 1122345666665      256788888887  4432  211111 


Q ss_pred             CCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         325 SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                                      . .+.+-|.++...+.+|||+++++|.++.+++++
T Consensus       837 ----------------v-~g~lmiepTE~eskeelD~f~~al~~I~~e~~~  870 (939)
T TIGR00461       837 ----------------V-PGTLMVEPTESESLEELDRFCDAMIAIKEEINA  870 (939)
T ss_pred             ----------------c-CCeEEEEeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence                            0 146677777778999999999999999999988

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=2.3e-24  Score=194.60  Aligned_cols=333  Identities=17%  Similarity=0.155  Sum_probs=232.8

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEE
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI   89 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~v   89 (397)
                      .++.++++.+.+.+-+.        ..   .+...++++++++++|++  ..+.++|||.|+.++++++..   ++||+|
T Consensus        14 ~~~e~~~v~~vl~sg~i--------~~---G~~v~~FE~~~ae~~G~k--~ava~~sgT~AL~laL~al~i---g~GDeV   77 (374)
T COG0399          14 GEEELAAVQEVLKSGWL--------TG---GPFVRRFEQAFAEYLGVK--YAVAVSSGTAALHLALLALAI---GPGDEV   77 (374)
T ss_pred             chHHHHHHHHHHHcCCe--------ec---ChHHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHhcCC---CCCCEE
Confidence            46778888888876321        11   236788999999999998  789999999999999996653   799999


Q ss_pred             EEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcE
Q psy8850          90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI  168 (397)
Q Consensus        90 l~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~  168 (397)
                      +++..+|.++..++...   |++++++++| +++.+|++.+|++|+++||+|+..|.   .|..++++.|.++|++||++
T Consensus        78 I~ps~TfvATan~i~~~---Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl---~G~~~dm~~i~~la~~~~l~  151 (374)
T COG0399          78 IVPSFTFVATANAVLLV---GAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRHGLP  151 (374)
T ss_pred             EecCCchHHHHHHHHHc---CCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehh---ccCCCCHHHHHHHHHHcCCe
Confidence            99999999999988888   9999999999 56899999999999999999999988   69999999999999999999


Q ss_pred             EEEecccccCccccccCcc--cccEEEecc--ccccCCCCceEEEEecCCC-CccccccccCCcc---ccc---cCCCCc
Q psy8850         169 FHCDAAQAVGKIDINIQNY--KVDLMSFSA--HKIYGPKGIGALYIRRNPR-TRIEAQIHGGGHE---YGL---RSGTLA  237 (397)
Q Consensus       169 livD~a~~~~~~~~~~~~~--~~d~~~~s~--~K~~g~~g~g~~~~~~~~~-~~~~~~~~~~~~~---~~~---~~~~~~  237 (397)
                      ||+|++|+.|...-+ +..  --|+-++||  .|.++....|.++.+++.+ ++++....-|...   ..+   ..|.. 
T Consensus       152 vIEDaAqa~Ga~y~g-k~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N-  229 (374)
T COG0399         152 VIEDAAQAHGATYKG-KKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYN-  229 (374)
T ss_pred             EEEEcchhccCeecC-cccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccc-
Confidence            999999999886432 222  235556665  5643332348888876533 3332222111111   011   11111 


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEecC--CChHHHHHHhC-
Q psy8850         238 THQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNF--IEGESLLMAIK-  311 (397)
Q Consensus       238 ~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~l~-  311 (397)
                       ..+-.+.+++... .+.++++.++-+++.+++.+.|++ ++++.+...+..  ...++..+.++.  .+...+...|+ 
T Consensus       230 -~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~-~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~  307 (374)
T COG0399         230 -YRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKG-LPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKE  307 (374)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHh
Confidence             1122233344333 235677788888889999999988 766555544332  334555556654  45678888887 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCC--------CccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGC--------NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~--------~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                       ||.  .+.++.|...  ....+..+.        ........+++.+....++++++++++.|++++..
T Consensus       308 ~gi~--~~~~~~P~~~--~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         308 AGVG--AVVYFRPLHL--QPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             CCCC--ceEEeecccc--chhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence             444  3344444211  123333322        22345688999999999999999999999988753

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.94  E-value=1.7e-25  Score=208.04  Aligned_cols=308  Identities=13%  Similarity=0.093  Sum_probs=204.5

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g  110 (397)
                      .|.+++...+....+++.++++.|.+  ..++++||+.|+.+++. +.    ++||+|+++++.|++....+... ...|
T Consensus        41 ~~~y~r~~~p~~~~Le~~la~l~g~~--~al~~~SG~~Al~~~l~-~l----~pGd~Vi~~~~~y~~t~~~~~~~~~~~g  113 (380)
T PRK06176         41 GYEYSRSGNPTRFALEELIADLEGGV--KGFAFASGLAGIHAVFS-LF----QSGDHVLLGDDVYGGTFRLFDKVLVKNG  113 (380)
T ss_pred             CCcccCCCChhHHHHHHHHHHHhCCC--CEEEECCHHHHHHHHHH-Hc----CCCCEEEEcCCChhHHHHHHHHHHHhcC
Confidence            35556666677899999999999976  35666777889987664 45    79999999999999887766543 4458


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      ++++.++..     |++++++++++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+..... ..+++|
T Consensus       114 i~v~~vd~~-----d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p-~~~gaD  187 (380)
T PRK06176        114 LSCTIIDTS-----DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNP-LLLGAD  187 (380)
T ss_pred             eEEEEcCCC-----CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCc-cccCCC
Confidence            898888754     89999999999999999999999999999999999999999999999999986543322 245899


Q ss_pred             EEEecccc-ccCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHK-IYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K-~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      ++++|++| +.|+..  .|+++.+++ ...++......       .....+....+.+...++    .+..+.++..+++
T Consensus       188 ivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~-------~G~~~~~~~~~l~~~gl~----tl~~R~~~~~~~a  256 (380)
T PRK06176        188 IVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNA-------IGGVLGPQDSWLLQRGIK----TLGLRMEAHQKNA  256 (380)
T ss_pred             EEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHH-------hcCCCCHHHHHHHHhccC----cHHHHHHHHHHHH
Confidence            99999999 445432  576776543 22222211100       001111111111111222    2345566666778


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccC----CCC
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACT----SAS  325 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~----~~~  325 (397)
                      .++.+.|++ .+.+..+..+.              ...++++.|.+++. ...++.+.|+  .+...-|...+    |..
T Consensus       257 ~~la~~L~~-~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~  335 (380)
T PRK06176        257 LCVAEFLEK-HPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGESLGGVESLVGIPAF  335 (380)
T ss_pred             HHHHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcceEccCCCCCCceeeCCcc
Confidence            888888887 66654332211              13467788888642 1234555554  33444444332    222


Q ss_pred             CCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         326 LEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       326 ~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.+    ....+..|+.+    +.||+|++.    |++|.+++.|++++++
T Consensus       336 ~~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dli~dl~~Al~~  378 (380)
T PRK06176        336 MTHACIPKEQREAAGIRD----GLVRLSVGI----EHEQDLLEDLEQAFAK  378 (380)
T ss_pred             cccccCCHHHHHhcCCCc----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            111    12234566654    899999996    6778888888877764

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.94  E-value=2.1e-24  Score=192.58  Aligned_cols=323  Identities=17%  Similarity=0.177  Sum_probs=223.3

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc-c
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK-K   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~-~   84 (397)
                      .+..+|.+++++.++..+.+.       .......+...++.+.|++..+ ..+.++|+|||++|++.+++....+.. .
T Consensus        56 lGH~hP~iv~al~~Q~~kl~h-------~sn~~~~~~~~~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~~~  127 (404)
T COG4992          56 LGHCHPALVEALKEQAEKLWH-------VSNLFYNEPQAELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDP  127 (404)
T ss_pred             cCCCCHHHHHHHHHHHHHhhh-------cccccCChHHHHHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcCCC
Confidence            456789999999999887441       1111223456778888888887 456899999999999999996554432 2


Q ss_pred             CCCEEEEcCCCChhhH-HHHHHHhhC----Cc-----EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850          85 RGKHIITVQTEHKSVL-DSIRKLEND----GF-----RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~-~~~~~~~~~----g~-----~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                      .+.+|+....+|++-. .++......    ++     .++.+|++     |+++++++++++|.+|+++.++...|++.+
T Consensus       128 ~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~~taAvivEPIQGEgGV~~~  202 (404)
T COG4992         128 EKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAAIDEDTAAVIVEPIQGEGGVIPA  202 (404)
T ss_pred             CCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-----CHHHHHHHhccCeEEEEEecccCCCCCCCC
Confidence            2346766666555443 222221110    11     24445555     899999999999999999999999999887


Q ss_pred             ----HHHHHHHHHhcCcEEEEecccccC-cc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccccc
Q psy8850         155 ----ILEIGELCRSKGVIFHCDAAQAVG-KI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHG  224 (397)
Q Consensus       155 ----l~~i~~l~~~~gi~livD~a~~~~-~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~  224 (397)
                          ++.+.++|++||+++|.|++|..- ..    ........+|+++..  | +.|+.++|+++.++.....+.+-.++
T Consensus       203 ~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tla--K~LgGG~PigA~la~~~~~~~~~~G~Hg  280 (404)
T COG4992         203 PPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLA--KALGGGFPIGAMLATEEIASAFTPGDHG  280 (404)
T ss_pred             CHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEee--ccccCCccceeeEEchhhhhcCCCCccc
Confidence                789999999999999999999732 21    122234468999888  9 77767799999985444445554444


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-Ch
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EG  303 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  303 (397)
                            .+.|.++ ..+++..++++.+.+  +.+.++.+++.++|.+.|++....+.+..+ -...+.++=+.+... ..
T Consensus       281 ------STfGGNp-LacAv~~a~l~~l~~--e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~-vRG~GLmiGiel~~~~~a  350 (404)
T COG4992         281 ------STFGGNP-LACAVALAVLEVLLE--EGLLENVREKGEYLLQRLRELKRRYPLVKE-VRGRGLMIGIELKEPYRA  350 (404)
T ss_pred             ------CCCCcCH-HHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHhhcCCceee-eecceeEEEEEecCcccH
Confidence                  3444444 555555588888876  567778888888888888772222222221 111134444555533 35


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      .++...++  ++.+...                       +.+.||+.++..++++++++++++|.+++......
T Consensus       351 ~~~~~~~~~~gvL~~~a-----------------------~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~~~  402 (404)
T COG4992         351 RDIVRALREEGVLVLPA-----------------------GPNVIRFLPPLVITEEEIDEALDALERALAAASAR  402 (404)
T ss_pred             HHHHHHHHHCCeEEecC-----------------------CCCeEEecCCccCCHHHHHHHHHHHHHHHHHhhhc
Confidence            77777776  7666543                       13799999999999999999999999999877553

>PLN02509 cystathionine beta-lyase

Probab=99.94  E-value=1.7e-24  Score=203.99  Aligned_cols=304  Identities=16%  Similarity=0.154  Sum_probs=205.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV  113 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v  113 (397)
                      +++...+...++++.++++.+.+  ..++++||+.|+.+++. +.    ++||+|+++.+.|+++...+.. +...|.++
T Consensus       127 Y~r~gnpt~~aLE~~lA~leg~e--~ai~~~SG~aAi~~il~-ll----~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v  199 (464)
T PLN02509        127 YTRSGNPTRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-LI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVV  199 (464)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCC--EEEEeCcHHHHHHHHHH-Hh----CCCCEEEEcCCchhhHHHHHHHHHHHCCeEE
Confidence            33333457888999999999865  56777888888866554 55    7999999999999998766543 33458998


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS  193 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~  193 (397)
                      +.++..     |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++++.+..... ...++|+++
T Consensus       200 ~~vd~~-----d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~p-l~~gaDivv  273 (464)
T PLN02509        200 KRVNTT-----NLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRP-LELGADIVM  273 (464)
T ss_pred             EEeCCC-----CHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCCh-hhcCCcEEE
Confidence            888643     78999999999999999999999999999999999999999999999999987764322 235899999


Q ss_pred             ecccc-ccCCCC--ceEEEEecCCC-CccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         194 FSAHK-IYGPKG--IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRL  269 (397)
Q Consensus       194 ~s~~K-~~g~~g--~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l  269 (397)
                      +|++| +.|+.+  .|+++++++.. ..+......       ..+..+....+.+...++    .+..+.++..+++.++
T Consensus       274 ~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~-------~g~~l~p~~A~l~lr~L~----tL~~R~~r~~~nA~~l  342 (464)
T PLN02509        274 HSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS-------EGSGLAPFDCWLCLRGIK----TMALRIEKQQENARKI  342 (464)
T ss_pred             ecCcccccCCCccceeEEEeccHHHHHHHHHHHHh-------cCCCcCHHHHHHHHhhhh----hHHHHHHHHHHHHHHH
Confidence            99999 555444  58887765432 111111100       011122222222223333    3456778888889999


Q ss_pred             HHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccCC----CCCCh
Q psy8850         270 YNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACTS----ASLEP  328 (397)
Q Consensus       270 ~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~----~~~~~  328 (397)
                      .+.|++ .|.+..+.-|+              ...++++.|.+.+.+ ...+.+.|+  .+...-|...+.    ..+.+
T Consensus       343 a~~L~~-~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh  421 (464)
T PLN02509        343 AMYLSS-HPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH  421 (464)
T ss_pred             HHHHhc-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHcCCcceEcccCCCCCceeeCCccccc
Confidence            999988 77764332211              134667788773211 345666666  444455543332    11211


Q ss_pred             ----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         329 ----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       329 ----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                          ....+..|+.+    +.||+|++.    |++|.+++.|.++++
T Consensus       422 ~~~~~~~~~~~Gi~~----~liRlSvGl----E~~~DLi~Dl~~Al~  460 (464)
T PLN02509        422 ASIPAEVREARGLTE----DLVRISAGI----EDVDDLISDLDIAFR  460 (464)
T ss_pred             ccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHc
Confidence                12234556654    899999997    567777777777664

>PRK08354 putative aminotransferase; Provisional

Probab=99.94  E-value=7.4e-24  Score=193.16  Aligned_cols=282  Identities=15%  Similarity=0.052  Sum_probs=181.8

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +|+.+.+++.+.+....      .|.       ....++++++++++   ++|++|+|+++|+.+++.. .    .+||.
T Consensus        21 ~p~~~~~a~~~~~~~~~------~yp-------~~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~~~-~----~~gd~   79 (311)
T PRK08354         21 PPEWLDEMFERAKEISG------RYT-------YYEWLEEEFSKLFG---EPIVITAGITEALYLIGIL-A----LRDRK   79 (311)
T ss_pred             CCHHHHHHHHHHHHHhh------cCC-------ChHHHHHHHHHHHC---CCEEECCCHHHHHHHHHHh-h----CCCCe
Confidence            46788888887765421      121       12457889999998   3699999999999987753 3    47899


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccH---HHHHHHHHhc
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGELCRSK  165 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---~~i~~l~~~~  165 (397)
                      |++..|+|+.+...++..   |.+++.++      +|++.++++++ +++++++++|+||||.+++.   ++|+++|+++
T Consensus        80 vlv~~P~y~~~~~~~~~~---g~~~~~~~------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~  149 (311)
T PRK08354         80 VIIPRHTYGEYERVARFF---AARIIKGP------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDR  149 (311)
T ss_pred             EEEeCCCcHHHHHHHHHc---CCEEeecC------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhc
Confidence            999999999999888877   88887654      57889988876 56788999999999999984   5677788999


Q ss_pred             CcEEEEecccccCccccccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHH
Q psy8850         166 GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVG  243 (397)
Q Consensus       166 gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (397)
                      |+++|+|++|............+..+++.|++|.+|.+|  +|++++   ..+.+.....         ....+..+..+
T Consensus       150 ~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~---------~~~~~~~~~~~  217 (311)
T PRK08354        150 NALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVRM---------PWSIGSTGYAF  217 (311)
T ss_pred             CcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcCC---------CccCCHHHHHH
Confidence            999999999963221111111245688999999777555  688776   2222222211         11222233333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCcc
Q psy8850         244 MGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSAC  321 (397)
Q Consensus       244 l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~  321 (397)
                      +.+.++...+.+.+..+.+.+.++.+.+.+        .. ++.   .+++.+.+.  ++.++.+.+.  ||.+.+|..|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--------~~-~~~---~~~~~~~~~--~~~~~~~~l~~~gv~v~~g~~f  283 (311)
T PRK08354        218 LEFLIEDDFEHLRKTMPLIWREKERFEKAL--------YV-KSD---ANFFIKDVG--DAEKFVEFLKRNGILVRDCTSF  283 (311)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHhc--------CC-CCC---CcEEEEECC--CHHHHHHHHHHCCeEEEecccC
Confidence            322222111122222222222222222221        11 111   334344433  4566777665  9999998654


Q ss_pred             CCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         322 TSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ..                   ++++||+++   ..++.++++++|+++
T Consensus       284 ~~-------------------~~~iRi~~~---~~~~~~~l~~al~~~  309 (311)
T PRK08354        284 GL-------------------PGYIRFSVR---DREENEKLIRALREW  309 (311)
T ss_pred             CC-------------------CCeEEEEeC---CHHHHHHHHHHHHHh
Confidence            32                   278999998   477888888888865

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.94  E-value=4.9e-24  Score=199.10  Aligned_cols=309  Identities=15%  Similarity=0.111  Sum_probs=206.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEEEEecc
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKP  118 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v~~v~~  118 (397)
                      .+....+++.++++.|..  ..+.++||+.|+.+++.+++    ++||+||++.+.|.++...... +...|+++++++.
T Consensus        60 nPtv~~lE~~la~leg~~--~av~~~SG~aAi~~al~all----~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~  133 (432)
T PRK06702         60 NPTLAAFEQKLAELEGGV--GAVATASGQAAIMLAVLNIC----SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP  133 (432)
T ss_pred             CcHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence            356888999999999986  57889999999999999887    8999999999999988887655 3555999999965


Q ss_pred             CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc
Q psy8850         119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK  198 (397)
Q Consensus       119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K  198 (397)
                      +    +|+++++++|+++|++|+++++.||++.+.|+++|+++|+++|+++++|++++.+... .....++|+++.|++|
T Consensus       134 ~----~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~~-~pl~~GADIvv~S~TK  208 (432)
T PRK06702        134 N----LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLC-QAFEHGANIIVHSTTK  208 (432)
T ss_pred             C----CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhhC-ChhhcCCCEEEEcccc
Confidence            3    6899999999999999999999999999999999999999999999999998744321 2234589999999999


Q ss_pred             -ccCCCC--ceEEEEecCCC-------Cccc---cccc---cCC----------c--cccccCCCCchhHHHHHHHHHHH
Q psy8850         199 -IYGPKG--IGALYIRRNPR-------TRIE---AQIH---GGG----------H--EYGLRSGTLATHQIVGMGEAFRL  250 (397)
Q Consensus       199 -~~g~~g--~g~~~~~~~~~-------~~~~---~~~~---~~~----------~--~~~~~~~~~~~~~~~~l~~al~~  250 (397)
                       +.|..+  .|+++.+....       ..+.   ....   ...          .  ........++....+-+...|+ 
T Consensus       209 y~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~-  287 (432)
T PRK06702        209 YIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLE-  287 (432)
T ss_pred             ccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccC-
Confidence             444322  34444322110       0000   0000   000          0  0000011222222222222332 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCC--ChHHHHHHhC--
Q psy8850         251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI--EGESLLMAIK--  311 (397)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~~~~l~--  311 (397)
                         .++.+.++..+++..+.+.|++ .|.+..+..|.               ...++++.|.+++.  ...++...|+  
T Consensus       288 ---Tl~lR~~r~~~Na~~la~~L~~-~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~  363 (432)
T PRK06702        288 ---TLHLRMERHSENALAVAKWLAD-HERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLA  363 (432)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHh-CCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCccc
Confidence               3556677778999999999998 77765443221               12467888888631  1235555555  


Q ss_pred             CcEecccCccC----CCCCChh----hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACT----SASLEPS----YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       312 ~i~~~~g~~~~----~~~~~~~----~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+...-|..-+    |.++.++    ...+..|+.+    +.||+|++.    |+.|.+++.|.++++-
T Consensus       364 ~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~----~liRlSvGl----Ed~eDLi~Dl~~Al~~  424 (432)
T PRK06702        364 TLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTS----DLIRLSVGI----EDVSDIIADLEAALVG  424 (432)
T ss_pred             eeccccCCCCcceECCCCCCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhc
Confidence            44444443222    2222221    1233455554    899999997    6778888888877653

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.94  E-value=3.2e-24  Score=201.82  Aligned_cols=316  Identities=17%  Similarity=0.140  Sum_probs=207.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~  111 (397)
                      +.+++...+...++++.|+++.|.+  ..++++||++|+.+++.++.    ++||+|+++.+.|+++...+..... .|+
T Consensus        50 ~~y~r~~~pt~~~Le~~lA~l~g~~--~~l~~ssG~~Ai~~al~al~----~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi  123 (425)
T PRK06084         50 NIYTRIMNPTNDVLEQRVAALEGGV--GALAVASGMAAITYAIQTIA----EAGDNIVSVAKLYGGTYNLLAHTLPRIGI  123 (425)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCCC--ceeEehhHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHhccccee
Confidence            3344444566789999999999965  56788899999999999888    7899999999999977766654322 377


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++..++.+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|++||+|++++.+.... ....++|+
T Consensus       124 ~v~~~d~~-----d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~-p~~~gaDi  197 (425)
T PRK06084        124 ETRFAAHD-----DIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCR-PFEHGADI  197 (425)
T ss_pred             EEEEECCC-----CHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC-hhhcCCCE
Confidence            77777643     8999999999999999999999999999999999999999999999999999765432 23458999


Q ss_pred             EEeccccccCCCC--ceEEEEe-cCC-CCcccccc----------ccCCccc----------------cccCCCCchhHH
Q psy8850         192 MSFSAHKIYGPKG--IGALYIR-RNP-RTRIEAQI----------HGGGHEY----------------GLRSGTLATHQI  241 (397)
Q Consensus       192 ~~~s~~K~~g~~g--~g~~~~~-~~~-~~~~~~~~----------~~~~~~~----------------~~~~~~~~~~~~  241 (397)
                      +++|++|++++.|  +|.+++. ... ........          .+.....                .......+....
T Consensus       198 vv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a  277 (425)
T PRK06084        198 VVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNA  277 (425)
T ss_pred             EEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            9999999554333  3444443 321 11110000          0000000                000001111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC--------------CC-CCceEEEEecCC--ChH
Q psy8850         242 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--------------NR-IPHNLNISFNFI--EGE  304 (397)
Q Consensus       242 ~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~--~~~  304 (397)
                      +.+...+    +.+..+.++..+++..+.+.|++ .|.+..+.-|.              .. .++++.|.+++.  ...
T Consensus       278 ~l~lrgl----~tl~~R~~~~~~na~~la~~L~~-~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~  352 (425)
T PRK06084        278 FLILQGL----ETLALRMERHTENALKVARYLQQ-HPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAGA  352 (425)
T ss_pred             HHHHcCc----CcHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCCHHHHH
Confidence            1111111    13667788888999999999998 77764332211              12 466888888642  134


Q ss_pred             HHHHHhC--CcEecccCccCC----CCCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK--DIAVSSGSACTS----ASLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~----~~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ++.+.|+  .+...-|...+.    ..+.+    ....+..|+.+    +.||||++.    ||.|.+++.|.+++...
T Consensus       353 ~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~----~liR~svGl----Ed~~dLi~dl~~Al~~~  423 (425)
T PRK06084        353 RFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSR----DMVRLSIGI----EHIDDIIADLAQALDAS  423 (425)
T ss_pred             HHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            5666665  344444544332    22211    12344566664    899999997    67778888888877654

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.94  E-value=1.4e-24  Score=200.75  Aligned_cols=308  Identities=14%  Similarity=0.091  Sum_probs=206.9

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHH-HHhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~-~~~~~g~  111 (397)
                      |.+++...+....+++.++.+-+.+  ..++++||+.|+.+++.++.    ++||+|+++++.|+++...+. .+.+.|+
T Consensus        56 y~YsR~gnPt~~~Le~~la~le~~~--~~v~~sSG~aAi~~~l~all----~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi  129 (395)
T PRK05967         56 YTYGTRGTPTTDALCKAIDALEGSA--GTILVPSGLAAVTVPFLGFL----SPGDHALIVDSVYYPTRHFCDTMLKRLGV  129 (395)
T ss_pred             CccCCCCChHHHHHHHHHHHHhCCC--CEEEECcHHHHHHHHHHHhc----CCCCEEEEccCCcHHHHHHHHHHHHhcCe
Confidence            4444556677888999999888755  34666668999999999887    899999999999999887653 3455599


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      ++..++.+     +.+.++++++++|++|++++|+||++.+.|+++|+++||++|+++++|++++.+.. .....+++|+
T Consensus       130 ~v~~vd~~-----~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~-~~pl~~GaDi  203 (395)
T PRK05967        130 EVEYYDPE-----IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY-FRPLDFGVDI  203 (395)
T ss_pred             EEEEeCCC-----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee-cChhHcCCCE
Confidence            99998654     45789999999999999999999999999999999999999999999999986532 2344569999


Q ss_pred             EEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR  268 (397)
Q Consensus       192 ~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~  268 (397)
                      ++.|.+|+.++.+   .|++..+++..+.+.....       ......+....+.+...++    .+.-+.++..+++..
T Consensus       204 vv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~-------~~G~~~~p~da~l~~rgl~----Tl~lR~~~~~~na~~  272 (395)
T PRK05967        204 SIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHG-------TLGLCAGPDDTYQILRGLR----TMGIRLEHHRKSALE  272 (395)
T ss_pred             EEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHH-------HcCCCCCHHHHHHHHcCcc----cHHHHHHHHHHHHHH
Confidence            9999999644433   5666655433222221111       1112333333333323333    345567777888888


Q ss_pred             HHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC---C---hHHHHHHhC--CcEecccCccCCC--
Q psy8850         269 LYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI---E---GESLLMAIK--DIAVSSGSACTSA--  324 (397)
Q Consensus       269 l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~---~---~~~~~~~l~--~i~~~~g~~~~~~--  324 (397)
                      +.+.|++ .|.+..+.-|+              ...++++.|.+++.   +   ..++.+.|+  .+...-|...+..  
T Consensus       273 lA~~L~~-hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sLi~~  351 (395)
T PRK05967        273 IARWLEG-RPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESLALH  351 (395)
T ss_pred             HHHHHHh-CCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCCcceeeee
Confidence            8888888 66653221111              13467888888632   2   345666665  3444445443321  


Q ss_pred             -CCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         325 -SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       325 -~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                       .+.+. .....|+.    ++.||||++.    |+.|.+++.|.++++.+
T Consensus       352 ~~~~~~-~~~~~~~~----~~liRlSvGl----Ed~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        352 VKLGDR-TVAKAPYA----GPVIRLQIGL----EDVPDLKADLERGFAAA  392 (395)
T ss_pred             CCCChh-HhhhccCC----CCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence             11111 11122333    3799999997    56777777777776543

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.94  E-value=7.6e-24  Score=198.65  Aligned_cols=333  Identities=16%  Similarity=0.152  Sum_probs=219.6

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGK   87 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~   87 (397)
                      .+++.++++.+.+....       +..    .+...++++.+++++|.+  +.++++|||+|+.+++.++ .    ++||
T Consensus         8 ~~~~~~~~v~~~~~~~~-------~~~----g~~~~~le~~la~~~g~~--~~v~~~sgt~al~~~l~al~~----~~Gd   70 (380)
T TIGR03588         8 IDQDDIDAVVEVLKSDF-------LTQ----GPTVPAFEEALAEYVGAK--YAVAFNSATSALHIACLALGV----GPGD   70 (380)
T ss_pred             CCHHHHHHHHHHHhcCC-------ccC----ChhHHHHHHHHHHHHCCC--eEEEEcCHHHHHHHHHHHcCC----CCCC
Confidence            35666888888775421       111    234688999999999986  4566778999999999987 4    7899


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELC  162 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~l~  162 (397)
                      +|+++.++|.++..++...   |.+++.++++ +++.+|+++++++++    +++++|++++   ++|...|+++|.++|
T Consensus        71 ~Viv~~~~~~~~~~~~~~~---G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l~  144 (380)
T TIGR03588        71 RVWTTPITFVATANCALYC---GAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAALA  144 (380)
T ss_pred             EEEeCCcchHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHHH
Confidence            9999999999998777666   9999999996 467899999999998    7889888655   589999999999999


Q ss_pred             HhcCcEEEEecccccCccccccCcccc----cEEEeccc--cccCCCCceEEEEecC-CCCccccccccCCcc-------
Q psy8850         163 RSKGVIFHCDAAQAVGKIDINIQNYKV----DLMSFSAH--KIYGPKGIGALYIRRN-PRTRIEAQIHGGGHE-------  228 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~~~~~~~~~~----d~~~~s~~--K~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~-------  228 (397)
                      ++||++||+|++|+.|.. ++...++.    |+.++|+|  |+++....|+++.+++ ..++++.....+...       
T Consensus       145 ~~~~~~lI~D~a~a~g~~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~  223 (380)
T TIGR03588       145 KKHGLKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEK  223 (380)
T ss_pred             HHcCCEEEEECCCcccCc-cCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCcccccc
Confidence            999999999999998865 34444455    99999988  7444323466666533 333333221111000       


Q ss_pred             -----ccccCCCCch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEec
Q psy8850         229 -----YGLRSGTLAT-HQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN  299 (397)
Q Consensus       229 -----~~~~~~~~~~-~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~  299 (397)
                           ..+..+.... ..+-.+.+++... .+.++++.++.+++.+++.+.|.+ ++++.+...+..  ..+....+.++
T Consensus       224 ~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~i~~~  302 (380)
T TIGR03588       224 QDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKD-LPYFTPLTIPLGSKSAWHLYPILLD  302 (380)
T ss_pred             cccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCCCCCCCCEeEEEEEEEEEC
Confidence                 0011111000 0111112222111 124677888889999999999988 776654433211  11234444554


Q ss_pred             C---CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhh-C-----CCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         300 F---IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRAL-G-----CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       300 ~---~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~-g-----~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      .   .+..++.+.|.  ||.+...  +.+....+  ..+.. +     .........|++++....+++||+++++.|++
T Consensus       303 ~~~~~~r~~l~~~L~~~gI~~~~~--~~~~~~~~--~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~  378 (380)
T TIGR03588       303 QEFGCTRKEVFEALRAAGIGVQVH--YIPVHLQP--YYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRK  378 (380)
T ss_pred             CcCCCCHHHHHHHHHHCCCCcccC--CcccccCh--hhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHH
Confidence            2   35678888887  7766643  22211111  11110 0     01123357899999998999999999999987


Q ss_pred             HH
Q psy8850         369 KV  370 (397)
Q Consensus       369 ~~  370 (397)
                      ++
T Consensus       379 ~~  380 (380)
T TIGR03588       379 VL  380 (380)
T ss_pred             hC
Confidence            63

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.94  E-value=3.7e-24  Score=202.25  Aligned_cols=316  Identities=16%  Similarity=0.138  Sum_probs=211.3

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++.+|.+.+++.+++.... .... .+.     .....++.+.++++++.+ ++++++++||++|+..+++.+..   ..
T Consensus        58 G~~~p~v~~ai~~~~~~~~-~~~~-~~~-----~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~---~g  127 (398)
T PRK03244         58 GHAHPAVVEAVTRQLATLG-HVSN-LFA-----TEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL---TG  127 (398)
T ss_pred             CCCCHHHHHHHHHHHHhcc-CccC-ccC-----CHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH---HC
Confidence            3457999999999987632 1111 111     223468899999998854 46899999999999999997663   12


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc-
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-  154 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~-  154 (397)
                      +++|+..+++|++.......+...          +.++..+|.     .|++++++.+.+++++|+++.++||+|.+.| 
T Consensus       128 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~  202 (398)
T PRK03244        128 RTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-----GDVDALAAAVDDDTAAVFLEPIQGEAGVVPPP  202 (398)
T ss_pred             CCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-----CCHHHHHHhhcCCeEEEEEecccCCCCCcCCC
Confidence            356666666666664433322110          112333333     3789999999888999999999999999988 


Q ss_pred             ---HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccC
Q psy8850         155 ---ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       155 ---l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~  225 (397)
                         +++|.++|++||+++|+|++|+. |..    ........+|++++|  | +.++.++|+++.+++..+.+.....+ 
T Consensus       203 ~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~s--K~l~~G~~ig~~~~~~~~~~~~~~~~~~-  279 (398)
T PRK03244        203 AGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLA--KGLGGGLPIGACLAFGPAADLLTPGLHG-  279 (398)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEc--hhhhCCcccEEEEEcHHHHhhccCCCCc-
Confidence               78999999999999999999862 211    112233457877665  9 54444589999987655544332111 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHH
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGES  305 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (397)
                           ...+ .+...+.+..++++.+.+  .++.+++.++.++|++.|++ +. ..+..... ..+.++.+.++......
T Consensus       280 -----~t~~-~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~v~-g~g~~~~i~~~~~~~~~  348 (398)
T PRK03244        280 -----STFG-GNPVACAAALAVLDTIAS--EGLLENAERLGEQLRAGIEA-LG-HPLVDHVR-GRGLLLGIVLTAPVAKA  348 (398)
T ss_pred             -----CCCC-CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHh-cC-CCceeeEe-eccEEEEEEEeccHHHH
Confidence                 1222 334455555577776554  35678888889999999987 42 22111110 12556677775433456


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +...+.  |+.+.+.                       ..+.||++++..++++||++++++|++++.+++
T Consensus       349 ~~~~l~~~Gv~~~~~-----------------------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~  396 (398)
T PRK03244        349 VEAAAREAGFLVNAV-----------------------APDVIRLAPPLIITDAQVDAFVAALPAILDAAA  396 (398)
T ss_pred             HHHHHHHCCeEEeec-----------------------CCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence            666665  7777642                       127899999998999999999999999997654

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.94  E-value=5.8e-24  Score=200.60  Aligned_cols=307  Identities=13%  Similarity=0.118  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEEEEecc
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKP  118 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v~~v~~  118 (397)
                      .+....+++.++++.|.+  ..++++||+.|+.+++.++.    ++||+|+++.+.|+++...+.. +...|++++.++.
T Consensus        62 ~p~~~~le~~lA~l~g~~--~al~~~SG~~Ai~~al~all----~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~  135 (427)
T PRK05994         62 NPTNAVLEERVAALEGGT--AALAVASGHAAQFLVFHTLL----QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA  135 (427)
T ss_pred             CccHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHh----CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence            456788999999999987  47788999999999999887    7999999999999988766544 3445999999886


Q ss_pred             CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc
Q psy8850         119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK  198 (397)
Q Consensus       119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K  198 (397)
                      +     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+... +...+++|+++.|++|
T Consensus       136 ~-----d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~-~pl~~gaDivv~S~tK  209 (427)
T PRK05994        136 D-----DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLI-RPIEHGADIVVHSLTK  209 (427)
T ss_pred             C-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccC-CccccCCcEEEEcCcc
Confidence            4     799999999999999999999999999999999999999999999999999866543 2334689999999999


Q ss_pred             ccCCCC--ceEEEEecCCCCccc----ccccc---C---C-cc----------------ccccCCCCchhHHHHHHHHHH
Q psy8850         199 IYGPKG--IGALYIRRNPRTRIE----AQIHG---G---G-HE----------------YGLRSGTLATHQIVGMGEAFR  249 (397)
Q Consensus       199 ~~g~~g--~g~~~~~~~~~~~~~----~~~~~---~---~-~~----------------~~~~~~~~~~~~~~~l~~al~  249 (397)
                      ++|+.|  +|.+++.........    +.+..   +   . ..                .+......+....+.+...+ 
T Consensus       210 ~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l-  288 (427)
T PRK05994        210 FLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGI-  288 (427)
T ss_pred             ccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCc-
Confidence            555433  454444311111000    00000   0   0 00                00000111111111111111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCC--ChHHHHHHhC-
Q psy8850         250 LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI--EGESLLMAIK-  311 (397)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~~~~l~-  311 (397)
                         +.++.+.++..+++..+.+.|++ .|.+..+..|.               ...++++.|.+++.  ...++.+.|+ 
T Consensus       289 ---~tL~~r~~~~~~~a~~la~~L~~-~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~l  364 (427)
T PRK05994        289 ---ETLPLRMQRHSDNALAVAEWLKG-HPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSSLKL  364 (427)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecCCHHHHHHHHHhCCc
Confidence               13666788888889999999988 77764332221               23466788888631  1335555555 


Q ss_pred             -CcEecccCccCC----CCCChh----hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         312 -DIAVSSGSACTS----ASLEPS----YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       312 -~i~~~~g~~~~~----~~~~~~----~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                       .+..+.|...+.    ..+.+.    ...+..|+.+    +.||+|++.    |+.|.+++.|.++++
T Consensus       365 ~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~----~liRlsvGl----E~~~dli~dl~~Al~  425 (427)
T PRK05994        365 FSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGP----DVVRLSIGI----EDVDDIIADLEQALA  425 (427)
T ss_pred             ceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCC----CcEEEEecc----CCHHHHHHHHHHHHh
Confidence             444455554432    222221    1223455554    899999997    667777777777765

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.94  E-value=2.2e-23  Score=210.69  Aligned_cols=306  Identities=13%  Similarity=0.159  Sum_probs=211.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeC-ChhHHHHHHHHHhHhhhccCC----CEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          39 AEKAIEKARNEVAQLIYADPREIIWTS-GATESNNLAIKGAAHFYKKRG----KHIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        39 ~~~~~~~~~~~la~~~~~~~~~i~~~~-g~t~a~~~~l~~l~~~~~~~g----~~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      .-+.+.++++++++++|.+  ++.+.+ |+++|..+.+.++.....++|    ++|++++..|+++..++..+   |+++
T Consensus       540 ~l~~i~e~q~~l~eltG~d--~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~---G~~v  614 (954)
T PRK05367        540 YRELIDQLEAWLAEITGYD--AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMA---GMKV  614 (954)
T ss_pred             HHHHHHHHHHHHHHHHCCC--CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHC---CCEE
Confidence            4478889999999999987  566655 555666555554443222333    47999999999998887776   9999


Q ss_pred             EEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccc-cCcccc
Q psy8850         114 TYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-IQNYKV  189 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~-~~~~~~  189 (397)
                      +.++++.+|.+|+++|++++++   ++.+|+++++++.++...|+++|+++||++|+++++|+++..+...+. ...+++
T Consensus       615 v~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GA  694 (954)
T PRK05367        615 VVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGA  694 (954)
T ss_pred             EEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCC
Confidence            9999998899999999999965   477888888887755568899999999999999999999986644332 335689


Q ss_pred             cEEEecccc-cc-----CCCCceEEEEecCCCCccccccccCCccc-ccc--CCCCc---hhHHHH---HHHHHHHH-HH
Q psy8850         190 DLMSFSAHK-IY-----GPKGIGALYIRRNPRTRIEAQIHGGGHEY-GLR--SGTLA---THQIVG---MGEAFRLA-RI  253 (397)
Q Consensus       190 d~~~~s~~K-~~-----g~~g~g~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~---~~~~~~---l~~al~~~-~~  253 (397)
                      |++++|+|| ++     |++|+|++++++++.    +++.+..... ...  .|...   +.+...   .+..+..+ .+
T Consensus       695 Di~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~----p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~  770 (954)
T PRK05367        695 DVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLA----PFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAE  770 (954)
T ss_pred             CEEEecCcccCCCCcCCCCCceEEEeeccccc----ccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHH
Confidence            999999999 53     444577999985433    3333322100 000  11222   111111   12223322 45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec------CCChHHHHHHhC--CcEecccCccCCCC
Q psy8850         254 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN------FIEGESLLMAIK--DIAVSSGSACTSAS  325 (397)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~--~i~~~~g~~~~~~~  325 (397)
                      ++.+..+....+++++.+.|++ ...+...++.. ...+-+.+.++      +.+..++.++|.  |+....-.  .+  
T Consensus       771 Glr~~a~~~~~~A~Yl~~~L~~-~~~~~~~~~~~-~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~--~p--  844 (954)
T PRK05367        771 GLRQATEVAILNANYIAKRLKD-HYPVLYTGANG-RVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMS--FP--  844 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hcCccccCCCC-CcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecC--Cc--
Confidence            6888888888999999999988 33333333211 11233445443      245678888876  55443211  11  


Q ss_pred             CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         326 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       326 ~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                                      ..+.+||+++.+++++|+|+++++|..+.+++.+
T Consensus       845 ----------------v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~  878 (954)
T PRK05367        845 ----------------VAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE  878 (954)
T ss_pred             ----------------cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence                            0378999999999999999999999999999988

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=3e-24  Score=197.66  Aligned_cols=272  Identities=15%  Similarity=0.069  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC
Q psy8850          44 EKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG  122 (397)
Q Consensus        44 ~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~  122 (397)
                      .++++.+++++|.+ +++|++|+|+++++.++.. +.    ++|+ |++..|+|+.+...++..   |.+++.++.+.  
T Consensus        56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~----~~g~-v~v~~P~y~~y~~~~~~~---g~~~~~v~~~~--  124 (339)
T PRK06959         56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LL----PRGR-VGIAPLAYSEYAPAFARH---GHRVVPLDEAA--  124 (339)
T ss_pred             HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hc----CCCe-EEEcCCCcHHHHHHHHHC---CCEEEeecccc--
Confidence            78999999999996 4899999999999987654 44    5666 888999999999888877   99998887653  


Q ss_pred             CCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHH---HHhcCcEEEEecccccCccccccC---cccccEEEecc
Q psy8850         123 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL---CRSKGVIFHCDAAQAVGKIDINIQ---NYKVDLMSFSA  196 (397)
Q Consensus       123 ~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l---~~~~gi~livD~a~~~~~~~~~~~---~~~~d~~~~s~  196 (397)
                          +.    +.+.++++++++|+||||.+++.+++.++   |+++++++|+|++|.-......+.   ..+..+++.|+
T Consensus       125 ----~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~Sf  196 (339)
T PRK06959        125 ----DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSV  196 (339)
T ss_pred             ----hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecC
Confidence                22    23356789999999999999997665554   567899999999988432111111   12335888999


Q ss_pred             ccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8850         197 HKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM  274 (397)
Q Consensus       197 ~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~  274 (397)
                      +|.+|.+|  +|+++++++..+.+......         ...+.....+..++++. .+..++.++++.+.++++.+.|+
T Consensus       197 SK~~gl~GlRiGy~v~~~~li~~l~~~~~~---------~~vs~~~q~a~~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~  266 (339)
T PRK06959        197 GKFFGLAGVRAGFVLAAPALLAALRDALGA---------WTVSGPARHAVRAAFAD-AAWQAAMRERLAADGARLAALLR  266 (339)
T ss_pred             hhhcCCcchheEEEecCHHHHHHHHHhcCC---------CCCcHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99777555  79999887666655443321         11233444444455542 23466778999999999999999


Q ss_pred             hhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC
Q psy8850         275 ESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR  352 (397)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~  352 (397)
                      + + ++.+..  .   +.++++.++  +..++.+.|.  ||.++.   |..                   .+++||+++.
T Consensus       267 ~-~-g~~~~~--~---~~f~~~~~~--~~~~l~~~l~~~GI~vr~---~~~-------------------~~~lRisi~~  315 (339)
T PRK06959        267 A-H-GFAVHA--T---PLFSWTDDP--RAAALHAALARRGIWTRY---FAP-------------------PPSVRFGLPA  315 (339)
T ss_pred             H-C-CCCccC--c---ceEEEEeCC--CHHHHHHHHHhCCeEEEE---CCC-------------------CCeEEEECCC
Confidence            8 4 554432  1   344455543  4567777775  888852   211                   2689999953


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhcC
Q psy8850         353 FTTEKEIDFTIKLLKMKVKKLRELS  377 (397)
Q Consensus       353 ~~~~~~i~~~~~~l~~~~~~~~~~~  377 (397)
                        +.+++++++++|+++++.+...+
T Consensus       316 --~~~e~~~l~~al~~~~~~~~~~~  338 (339)
T PRK06959        316 --DEAEWQRLEDALAECVPTLAAAS  338 (339)
T ss_pred             --CHHHHHHHHHHHHHHHHHHhhcc
Confidence              67899999999999988776543

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.94  E-value=1.2e-24  Score=202.23  Aligned_cols=306  Identities=16%  Similarity=0.140  Sum_probs=203.9

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g  110 (397)
                      .+.+++...+...++++.++++.|.+.  .++++||++|+.+++ .+.    ++||+|+++++.|+++...+.. +...|
T Consensus        43 ~~~y~r~~~pt~~~le~~la~l~g~~~--~~~~~sG~~ai~~~~-~ll----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G  115 (366)
T PRK08247         43 GFDYSRTGNPTRGVLEQAIADLEGGDQ--GFACSSGMAAIQLVM-SLF----RSGDELIVSSDLYGGTYRLFEEHWKKWN  115 (366)
T ss_pred             CccccCCCCchHHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHH-HHh----CCCCEEEEecCCcCcHHHHHHHHhhccC
Confidence            355566666788999999999999974  477888899998765 455    6899999999999987766654 33459


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      ++++.++..     |++++++++++++++|++++|+||+|.+.++++|+++|+++|+++|+|++++.+...... ..+.|
T Consensus       116 ~~v~~vd~~-----d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-~~g~d  189 (366)
T PRK08247        116 VRFVYVNTA-----SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-EEGAD  189 (366)
T ss_pred             ceEEEECCC-----CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch-hcCCc
Confidence            999988763     899999999999999999999999999999999999999999999999999755432222 34789


Q ss_pred             EEEecccc-ccCCCC--ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHK-IYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K-~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      +++.|++| +.|..+  .|+++.++ +....+......       .....+....+.....++    .+..+.++.++++
T Consensus       190 i~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~-------~g~~~s~~~a~l~~~~l~----tl~~r~~~~~~~a  258 (366)
T PRK08247        190 IVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNA-------AGAVLSPFDSWLLIRGMK----TLALRMRQHEENA  258 (366)
T ss_pred             EEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHh-------cCCCCChHHHHHHHhccC----cHHHHHHHHHHHH
Confidence            99999999 444433  47777653 233333222111       011222222222223333    2345566778999


Q ss_pred             HHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC-hHHHHHHhC--CcEecccCc----cCCCCCCh----hhHHHhh
Q psy8850         267 KRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSA----CTSASLEP----SYVLRAL  335 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~----~~~~~~~~----~~~~~~~  335 (397)
                      +.+.+.|++ .|++..+..++  .++++.|.++..+ ...+.+.+.  .+...-|..    ..|+++.+    .......
T Consensus       259 ~~l~~~L~~-~p~v~~v~~P~--~gg~~sf~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~  335 (366)
T PRK08247        259 KAIAAFLNE-QPGVTDVLYPG--RGGMLSFRLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIAN  335 (366)
T ss_pred             HHHHHHHHh-CCCeeEEecCC--cCcEEEEEECCHHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhc
Confidence            999999998 78876543332  1556667665311 123444443  223322211    12222211    1222244


Q ss_pred             CCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         336 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       336 g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      |+.+    +.+|||++.    |+++.+++.|.+++++
T Consensus       336 gi~~----~~~R~svGl----E~~~dl~~dl~~al~~  364 (366)
T PRK08247        336 GVCN----RLLRFSVGI----ENVEDLIADLKQAFKQ  364 (366)
T ss_pred             CCCC----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            5543    899999997    6777778888777764

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.94  E-value=3.2e-24  Score=199.41  Aligned_cols=305  Identities=15%  Similarity=0.131  Sum_probs=203.2

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.+++...+...++++.++++.|.+.  .+++++|+.|+..++. +.    ++||+|+++++.|+++...+.. +...|.
T Consensus        42 ~~y~r~~~p~~~~Le~~lA~l~g~~~--~~~~~sG~aai~~~~~-~l----~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~  114 (377)
T PRK07671         42 YEYSRTGNPTRAALEELIAVLEGGHA--GFAFGSGMAAITAVMM-LF----SSGDHVILTDDVYGGTYRVMTKVLNRFGI  114 (377)
T ss_pred             CCcCCCCChHHHHHHHHHHHHhCCCc--eEEeCCHHHHHHHHHH-Hh----CCCCEEEECCCccchHHHHHHHHHhcCCe
Confidence            44555666788999999999999863  4556677778876653 55    7899999999999977665553 344599


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      +++.++..     |++++++++++++++|++++|+||+|.+.|+++|.++|+++|+++++|++++.+.... ...+++|+
T Consensus       115 ~v~~v~~~-----d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~-p~~~g~Di  188 (377)
T PRK07671        115 EHTFVDTS-----NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQS-PISLGADI  188 (377)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCC-hhhhCCeE
Confidence            99988753     8999999999999999999999999999999999999999999999999987544322 22457899


Q ss_pred             EEecccc-ccCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      ++.|++| +.|+.+  .|+++++++ ..+.+.....       ...+..+....+.+...++    .+..+.++..+++.
T Consensus       189 vv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~-------~~g~~~~~~~a~l~~~~l~----tl~~R~~~~~~na~  257 (377)
T PRK07671        189 VLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQN-------STGGILGPQDSWLLLRGLK----TLGIRMEEHETNSR  257 (377)
T ss_pred             EEecCcccccCCccceeEEEEeCcHHHHHHHHHHHH-------hhcCCCCHHHHHHHHcCcC----hHHHHHHHHHHHHH
Confidence            9999999 455542  466766543 3222221110       0012222222221112222    24557778888899


Q ss_pred             HHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccCC----CCC
Q psy8850         268 RLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACTS----ASL  326 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~----~~~  326 (397)
                      .+.+.|++ .+.+..+..+.              ...++++.|.+.+. ....+...|+  .+...-|...+.    ..+
T Consensus       258 ~la~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~  336 (377)
T PRK07671        258 AIAEFLNN-HPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQYFTLAESLGAVESLISIPSQM  336 (377)
T ss_pred             HHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCCHHHHHHHHHhCCcceEccCCCCCCeEeECCCcc
Confidence            99999988 77764442221              13467888888321 1334555555  344444544322    111


Q ss_pred             Ch----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         327 EP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       327 ~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .+    ....+..|+.+    +.||||++.    |+.+.+++.|.+++
T Consensus       337 ~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al  376 (377)
T PRK07671        337 THASIPADRRKELGITD----GLIRISVGI----EDGEDLIEDLAQAL  376 (377)
T ss_pred             ccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHh
Confidence            11    12234566654    899999997    56777777777654

>PRK07049 methionine gamma-lyase; Validated

Probab=99.94  E-value=3.2e-24  Score=202.19  Aligned_cols=308  Identities=16%  Similarity=0.130  Sum_probs=208.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.+++...+....+++.|+++.+.+  ++++++||+.|+.+++.+++    ++||+|+++.+.|+.+...+.. +...|+
T Consensus        75 ~~y~R~~~Pt~~~Le~~lA~leg~~--~~iv~~sG~~Ai~~~l~al~----~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi  148 (427)
T PRK07049         75 LVYSRFNHPNSEIVEDRLAVYEGAE--SAALFSSGMSAIATTLLAFV----RPGDVILHSQPLYGGTETLLAKTFRNFGV  148 (427)
T ss_pred             ccccCCCCcCHHHHHHHHHHHhCCC--cEEEEccHHHHHHHHHHHHh----CCCCEEEEcCCCcccHHHHHHHHHHhcCc
Confidence            3334444566788999999999965  68888999999999999888    8999999999999999877543 344588


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhc-----CCceEEEEecccCcccccccHHHHHHHHHh------cCcEEEEecccccCcc
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKIC-----SDTILVSVMLVNNEIGVIQPILEIGELCRS------KGVIFHCDAAQAVGKI  180 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~------~gi~livD~a~~~~~~  180 (397)
                      +++.++..    .|++++++++.     +++++|++++|+||||.++|++++.++++.      +++++++|+++..+..
T Consensus       149 ~~v~~~~~----~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~  224 (427)
T PRK07049        149 GAVGFADG----LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVF  224 (427)
T ss_pred             EEEEEeCC----CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccccc
Confidence            87766522    46778877664     479999999999999999999999999987      8999999999764432


Q ss_pred             ccccCcccccEEEeccccccC-CCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy8850         181 DINIQNYKVDLMSFSAHKIYG-PKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKE  257 (397)
Q Consensus       181 ~~~~~~~~~d~~~~s~~K~~g-~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~  257 (397)
                      .. ....++|+++.|++|.+| ..|  +|+++.+++..+.+......       ..++.+....+.+...++.    +..
T Consensus       225 ~~-pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~-------~g~~ls~~~a~l~~r~L~t----l~~  292 (427)
T PRK07049        225 QK-PLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSA-------IGTQLDPHSCWMLGRSLET----LVL  292 (427)
T ss_pred             CC-ccccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHcCCCh----HHH
Confidence            21 123478999999999444 344  68887776544444322111       1123333444443344443    445


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCcEEEeCCCC----------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecc
Q psy8850         258 ELKRILFLQKRLYNGLMESIEEIYINGDMN----------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSS  317 (397)
Q Consensus       258 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~  317 (397)
                      +.++..++++.+.+.|++ .|.+..+.-++                ...++++.|.+++.  ....+.+.|+  .+...-
T Consensus       293 R~~~~~~~a~~la~~L~~-~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~sl  371 (427)
T PRK07049        293 RMERANRNARAVAEFLRD-HPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSL  371 (427)
T ss_pred             HHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCcccEEcccC
Confidence            566778889999999998 77664332211                13466888888641  1345556665  444455


Q ss_pred             cCccCCC----CCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         318 GSACTSA----SLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       318 g~~~~~~----~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      |...+..    .+.+    ....+..|+.+    +.||||++.    |++|.+++.|.++++
T Consensus       372 G~~~sli~~~~~~~h~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~  425 (427)
T PRK07049        372 GGTESLASHPASMTHSGVPADVRERIGVLE----STIRLSIGI----EHPDDLIADLAQALD  425 (427)
T ss_pred             CCCCceeeCCCccccccCCHHHHHhcCCCc----CeEEEEeCc----CCHHHHHHHHHHHHh
Confidence            5444321    1111    12233456654    899999997    677778888877765

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.94  E-value=2e-24  Score=201.82  Aligned_cols=307  Identities=14%  Similarity=0.099  Sum_probs=206.9

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.+++...+...++++.++++.|.+  ++++++||++|+.+++.+++    ++||+|+++++.|+++...+.. ....|+
T Consensus        57 ~~Y~r~~~pt~~~Le~~lA~l~g~~--~~l~~~sgt~Ai~~~l~al~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi  130 (394)
T PRK07050         57 WRYGLHATPTSLALAQRLAEIEGGR--HALLQPSGLAAISLVYFGLV----KAGDDVLIPDNAYGPNRDHGEWLARDFGI  130 (394)
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCCC--eEEEeccHHHHHHHHHHHHh----CCCCEEEEecCCcccHHHHHHHHHHhcCe
Confidence            4445555667889999999999965  79999999999999999887    8999999999999998865543 334499


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      +++.++..     +.++++++++++|++|++++|+||+|.+.++++|+++|+++|+++++|++|+.+... .....++|+
T Consensus       131 ~v~~vd~~-----~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~-~~l~~GaDi  204 (394)
T PRK07050        131 TVRFYDPL-----IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAF-KPFEHGVDI  204 (394)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccccccc-CHHHcCCeE
Confidence            99988753     457899999999999999999999999999999999999999999999999877642 233447899


Q ss_pred             EEecccc-ccCCCC--ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      ++.|++| +.|..+  .|++++++ +..+++......       ..++.+....+.+...++    .+..+.++..+++.
T Consensus       205 ~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~-------~G~~~~~~~a~l~lr~l~----tl~~Rl~~~~~~a~  273 (394)
T PRK07050        205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMR-------LGIGVSADDCSLVLRGLP----SLQVRLAAHDRSAL  273 (394)
T ss_pred             EEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHcCCC----cHHHHHHHHHHHHH
Confidence            9999999 544333  46666643 333333222110       011222221111111122    34446677777788


Q ss_pred             HHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC----ChHHHHHHhC--CcEecccCccCCCC--
Q psy8850         268 RLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI----EGESLLMAIK--DIAVSSGSACTSAS--  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~----~~~~~~~~l~--~i~~~~g~~~~~~~--  325 (397)
                      ++.+.|++ .+.+..+..+.              ...++++.|.+...    +..++.+.|+  ++...-|...+...  
T Consensus       274 ~la~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~  352 (394)
T PRK07050        274 EVAEWLKA-RPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLAMPY  352 (394)
T ss_pred             HHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccccCCccceEeeC
Confidence            88888888 66654332111              13456777777632    2456666666  55566665554321  


Q ss_pred             -CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         326 -LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       326 -~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                       +.+ .......    ..++.||||++.    |+.|.+++.|.+++..
T Consensus       353 ~~~~-~~~~~~~----~~~~~iR~svGl----E~~~dl~~dl~~al~~  391 (394)
T PRK07050        353 DVAS-MRTAKWP----HRGTLVRLYIGL----EDEADLIADLEQALEA  391 (394)
T ss_pred             cccc-cchhhcC----CCCCEEEEEeCc----CCHHHHHHHHHHHHHH
Confidence             100 0111122    234899999997    5666666666666654

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.1e-24  Score=205.85  Aligned_cols=316  Identities=14%  Similarity=0.109  Sum_probs=203.0

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEE--EeCChhHHHHHHHHHhHh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREII--WTSGATESNNLAIKGAAH   80 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~--~~~g~t~a~~~~l~~l~~   80 (397)
                      ++..+.+++.+++..... +   .....|....+..++|+++++++.      +++++|.  .|.|+++|+.+++..+. 
T Consensus        44 ~~~~~~~~~~~a~~~~~~-~---~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~-  118 (404)
T PTZ00376         44 GKPYVLESVRKAEKIIAE-K---NLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLK-  118 (404)
T ss_pred             CCEehhhHHHHHHHHhcc-c---cCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHH-
Confidence            344556666666543221 1   111223334567888888888752      3566787  48899999988876321 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhc---CCceEEEEecccCccccccc-
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP-  154 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~-  154 (397)
                      .+.++||+|++.+|+|+.+...+..+   |.+++.+|..  +++.+|++.+++++.   +++++++++++|||||.+++ 
T Consensus       119 ~~~~~Gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~  195 (404)
T PTZ00376        119 RFLPAGTTVYVSNPTWPNHVNIFKSA---GLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTE  195 (404)
T ss_pred             HhcCCCCEEEEcCCCchhHHHHHHHc---CCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCH
Confidence            22279999999999999999888887   9999999983  346799999999885   34678888999999999998 


Q ss_pred             --HHHHHHHHHhcCcEEEEecccccCccc---------cccCc-ccccEEEeccccccCCCC--ceEEE---EecCCCCc
Q psy8850         155 --ILEIGELCRSKGVIFHCDAAQAVGKID---------INIQN-YKVDLMSFSAHKIYGPKG--IGALY---IRRNPRTR  217 (397)
Q Consensus       155 --l~~i~~l~~~~gi~livD~a~~~~~~~---------~~~~~-~~~d~~~~s~~K~~g~~g--~g~~~---~~~~~~~~  217 (397)
                        +++|+++|++||++||+|++|......         ..+.. ....+++.|++|.++.+|  +|+++   .+++..+.
T Consensus       196 ~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~  275 (404)
T PTZ00376        196 EQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAAN  275 (404)
T ss_pred             HHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHH
Confidence              467788899999999999998622110         01111 124588899999766445  78874   33332222


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCC
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNN  288 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~  288 (397)
                      +...+...   .....+..+.....+...+++..      .+.+.+.+++++++++.+.+.|++ +.   ++.+..+.+ 
T Consensus       276 l~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~p~g-  350 (404)
T PTZ00376        276 VLSQLKLI---IRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKA-LGSPGDWEHIINQI-  350 (404)
T ss_pred             HHHHHHHH---HhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcccccccCc-
Confidence            21111000   00011122333333333444321      123556677889999999999988 42   122322322 


Q ss_pred             CCCceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850         289 RIPHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL  365 (397)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  365 (397)
                        +..+++.+   + .++.+.|.   +|.+.+|                         +  |++++. .+.+++++++++
T Consensus       351 --g~f~~~~~---~-~~~~~~L~~~~~v~v~p~-------------------------~--Ris~~~-~~~~~~~~~~~~  396 (404)
T PTZ00376        351 --GMFSFTGL---T-KEQVERLIEKYHIYLLDN-------------------------G--RISVAG-LTSKNVDYVAEA  396 (404)
T ss_pred             --eEEEecCC---C-HHHHHHHHHhCCEeecCC-------------------------C--eEEEec-cCHHhHHHHHHH
Confidence              22333333   2 35555554   6777654                         3  999975 689999999999


Q ss_pred             HHHHHH
Q psy8850         366 LKMKVK  371 (397)
Q Consensus       366 l~~~~~  371 (397)
                      |++++.
T Consensus       397 l~~~~~  402 (404)
T PTZ00376        397 IHDVVR  402 (404)
T ss_pred             HHHHHh
Confidence            998865

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.94  E-value=1.3e-23  Score=195.28  Aligned_cols=329  Identities=15%  Similarity=0.108  Sum_probs=214.7

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGK   87 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~   87 (397)
                      .+++.++++.+.+.+-        ...+  ..+...++++.++++++.+  ++++++|+|+|+.+++.++ .    ++||
T Consensus         9 ~~~~e~~a~~~~~~~~--------~~~~--~g~~~~~~e~~la~~~g~~--~~v~~~sgt~aL~~~l~al~~----~pGd   72 (376)
T TIGR02379         9 VTGQELEYIAEAISEG--------KLSG--DGPFSRRCETWLENRTGTK--KALLTPSCTAALEMAALLLDI----QPGD   72 (376)
T ss_pred             CCHHHHHHHHHHHHcC--------CccC--CcHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC----CCcC
Confidence            3567788888887651        1111  1235788899999999876  7999999999999998876 4    7999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG  166 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g  166 (397)
                      +|++++++|+++..++...   |.+++.++++++ +.+|++++++++++++++|+.   .+++|...|+++|.++|++||
T Consensus        73 ~Viv~~~t~~~~~~~~~~~---G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Iip---~~~~G~~~d~~~I~~la~~~~  146 (376)
T TIGR02379        73 EVIMPSYTFVSTANAFVLR---GAKIVFVDIRPDTMNIDETLIESAITHRTKAIVP---VHYAGVACDMDTIMALANKHQ  146 (376)
T ss_pred             EEEECCCCcHHHHHHHHHc---CCEEEEEecCCCcCCCCHHHHHHhcCcCceEEEE---eCCCCCccCHHHHHHHHHHCC
Confidence            9999999999998888766   999999999865 679999999999999999874   456899999999999999999


Q ss_pred             cEEEEecccccCccccccCccc--ccEEEecccc---c-cCCCCceEEEEe-cCCCCccccccccCCcc-c-------cc
Q psy8850         167 VIFHCDAAQAVGKIDINIQNYK--VDLMSFSAHK---I-YGPKGIGALYIR-RNPRTRIEAQIHGGGHE-Y-------GL  231 (397)
Q Consensus       167 i~livD~a~~~~~~~~~~~~~~--~d~~~~s~~K---~-~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~-~-------~~  231 (397)
                      ++||+|++|+.+.. .+....+  .|+.++|+|+   + .|+. .|+++.+ ++..++++.....|... .       .+
T Consensus       147 i~vIeDaa~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~-gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  224 (376)
T TIGR02379       147 LFVIEDAAQGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGE-GGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKY  224 (376)
T ss_pred             CEEEEECccccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCC-ceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcc
Confidence            99999999998764 2222223  3777888765   2 2334 4777776 34444444333222110 0       00


Q ss_pred             ---cCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--c-EEEeCCCCC--CCCceEEEEecC
Q psy8850         232 ---RSGT---LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE--E-IYINGDMNN--RIPHNLNISFNF  300 (397)
Q Consensus       232 ---~~~~---~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~-~~~~~~~~~--~~~~~~~~~~~~  300 (397)
                         ..|.   ++-.+.+...+.|+    .+++..++.++..++..+.|.+ ++  + ..+...+..  ...+++.+.++.
T Consensus       225 ~~~~~g~n~~~~~~~Aa~g~~qL~----~l~~~~~~r~~~~~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  299 (376)
T TIGR02379       225 TWRDIGSSYLPSELQAAYLWAQLE----QADRINQDRLATWQLYQDALKP-LEEKGIIELPSIPNGCQHNAHMFYIKLKD  299 (376)
T ss_pred             eeeeecccCCccHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHhcc-CCcCCeeeCCCCCCCCeeeeEEEEEEECC
Confidence               0111   11111111112333    3455666666667777777766 43  2 222211111  122445555543


Q ss_pred             -CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCC-------CccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         301 -IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGC-------NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       301 -~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~-------~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                       .+..++.+.|+  ||.....  +.|....+  ..+.++.       ........|.+.+....+++|++++++.|++++
T Consensus       300 ~~~r~~l~~~L~~~gI~~~~~--~~p~~~~~--~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       300 EDDRNELIKYLKEQEIMAVFH--YVPLHSSP--AGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL  375 (376)
T ss_pred             cCCHHHHHHHHHHCCCCcccc--CcCCCcch--hHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence             35678888887  7765533  33322222  1112211       112235679999998899999999999999864

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.93  E-value=6.5e-24  Score=201.95  Aligned_cols=320  Identities=18%  Similarity=0.153  Sum_probs=215.7

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      -+..+|.+.+++.+++....      .+..+....+...++++.++++++.+.+.+++++||++|+..++..+...  .+
T Consensus        50 lG~~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~--~~  121 (413)
T cd00610          50 LGHNHPEVVEALKEQLAKLT------HFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAY--TG  121 (413)
T ss_pred             cCCCCHHHHHHHHHHHHhCc------CccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHH--cC
Confidence            34478999999999986521      11111112457888999999999977779999999999999999976422  35


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCC------CCCCCHHHHHHHhcC---CceEEEEeccc
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKN------NGLITLSQLEEKICS---DTILVSVMLVN  146 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~------~~~~d~~~l~~~i~~---~~~~v~~~~~~  146 (397)
                      +++|++.++.|++.......+...          ..++..+|.+.      +...|++++++.+++   ++++++++..+
T Consensus       122 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~  201 (413)
T cd00610         122 RKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQ  201 (413)
T ss_pred             CCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEcccc
Confidence            688888888777766554443211          12355666652      223488999999876   67888898888


Q ss_pred             Cccccccc----HHHHHHHHHhcCcEEEEecccccC-cc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCC
Q psy8850         147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVG-KI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT  216 (397)
Q Consensus       147 ~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~-~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~  216 (397)
                      +++|.+.|    +++|.++|++||+++|+|++|+.. ..    ..+.....+|++++  +| +.++.++|+++++++..+
T Consensus       202 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~--sK~l~~g~~~g~~~~~~~~~~  279 (413)
T cd00610         202 GEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTL--GKGLGGGLPLGAVLGREEIMD  279 (413)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEE--cccccCccccEEEEEcHHHHH
Confidence            88999887    899999999999999999998732 11    11222234676654  59 544445899988876555


Q ss_pred             cc--ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCce
Q psy8850         217 RI--EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHN  293 (397)
Q Consensus       217 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~  293 (397)
                      .+  ....      ... ..+.+...+.+..++++.+.+  ..+.+++.++.+++++.|++ +... .+.... ...+.+
T Consensus       280 ~~~~~~~~------~~~-t~~~~~~~~~a~~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~-~~~g~~  348 (413)
T cd00610         280 AFPAGPGL------HGG-TFGGNPLACAAALAVLEVLEE--EGLLENAAELGEYLRERLRE-LAEKHPLVGDV-RGRGLM  348 (413)
T ss_pred             hhccCCCC------CCC-CCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-HHhhCCcEEEe-ecCceE
Confidence            43  1111      111 123344556666678887765  46678888888888888877 4210 111110 112456


Q ss_pred             EEEEecCC---------ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHH
Q psy8850         294 LNISFNFI---------EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT  362 (397)
Q Consensus       294 ~~~~~~~~---------~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~  362 (397)
                      +.+.+...         ....+.+.|.  ||.+.++.                       .+.+|++++..+++++|+++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~-----------------------~~~lR~~~~~~~t~~~i~~~  405 (413)
T cd00610         349 IGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG-----------------------GNVIRLLPPLIITEEEIDEG  405 (413)
T ss_pred             EEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC-----------------------CCEEEEECCCcCCHHHHHHH
Confidence            66766532         2345665554  77777652                       27899999998999999999


Q ss_pred             HHHHHHH
Q psy8850         363 IKLLKMK  369 (397)
Q Consensus       363 ~~~l~~~  369 (397)
                      +++|.++
T Consensus       406 ~~~l~~~  412 (413)
T cd00610         406 LDALDEA  412 (413)
T ss_pred             HHHHHHh
Confidence            9999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.93  E-value=6.1e-24  Score=200.32  Aligned_cols=337  Identities=18%  Similarity=0.189  Sum_probs=217.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccC--CCCCCCcchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhH
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFG--NPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      .+|...++|.+++++...+...++  .+.+ ....+......+++ +++.+++++|.+. .+++++||+.|+..++.+++
T Consensus        34 ~~sen~~~p~v~~a~~~~~~~~~~~g~~gs-r~~~G~~~~~~lE~~~~~~la~l~g~~~-alv~~~SG~~A~~~~l~al~  111 (416)
T PRK13034         34 IASENFTSPAVMEAQGSVLTNKYAEGYPGK-RYYGGCEFVDEVEALAIERAKQLFGCDY-ANVQPHSGSQANGAVYLALL  111 (416)
T ss_pred             cccccCCCHHHHHHhcchhhcCCCCCCCCC-cccCCChHHHHHHHHHHHHHHHHhCCCc-eEEecCCcHHHHHHHHHHhc
Confidence            456677899999999999633332  2333 22222222223333 4459999999872 34557899999999999997


Q ss_pred             hhhccCCCEEEEcCCCChhhHH-HHHHHhhCCcEE--EEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCccccccc
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLD-SIRKLENDGFRV--TYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~-~~~~~~~~g~~v--~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~  154 (397)
                          ++||+|+++...|.+... .... ...+...  ..++.+ .++.+|++++++++.. ++++|+++++.  .|...|
T Consensus       112 ----~~GD~Vl~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~d  184 (416)
T PRK13034        112 ----KPGDTILGMSLSHGGHLTHGAKV-SLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELD  184 (416)
T ss_pred             ----CCCCEEEEcCccceeeeecCCcc-eeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--cccccC
Confidence                899999999998877322 1111 0002222  344444 3566899999998854 68888775543  578889


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCccccccC---cccccEEEecccc-ccCCCCceEEEEecCCC-CccccccccCCccc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQ---NYKVDLMSFSAHK-IYGPKGIGALYIRRNPR-TRIEAQIHGGGHEY  229 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~---~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~-~~~~~~~~~~~~~~  229 (397)
                      +++|.++|++||+++++|++|++|....+..   ..++|++++|+|| +.|+.| |+++.+++.. ..+....+.+    
T Consensus       185 l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~~~~~~~----  259 (416)
T PRK13034        185 FARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKINSAVFPG----  259 (416)
T ss_pred             HHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHHhhcCCc----
Confidence            9999999999999999999999776533221   0158999999999 557766 7777665432 2233322211    


Q ss_pred             cccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESL  306 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  306 (397)
                       .. +.+..+..+++..++.... .+..++.+++.++.++|++.|.+ . |+.+..+.  ....++.+.+..  .+...+
T Consensus       260 -~~-~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~-~-G~~~~~~~--~~t~i~~v~~~~~~~~~~~~  333 (416)
T PRK13034        260 -LQ-GGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKE-R-GYDLVSGG--TDNHLLLVDLRPKGLSGKDA  333 (416)
T ss_pred             -cc-CCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH-c-CCEeccCC--CCCcEEEEEcCCCCCCHHHH
Confidence             11 2233444454444444433 34456789999999999999998 4 77776421  124555666543  344566


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC----CCCHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~----~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+.|.  ||.+..-....             ....+.....||++++.    .++++||++++++|.+++..
T Consensus       334 ~~~L~~~GI~v~~~~~p~-------------~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~  392 (416)
T PRK13034        334 EQALERAGITVNKNTVPG-------------DTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD  392 (416)
T ss_pred             HHHHHhCCcEEeccCCCC-------------CCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            56665  77776421000             00011113679999877    56799999999999999774

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.93  E-value=1.1e-23  Score=193.43  Aligned_cols=294  Identities=13%  Similarity=0.104  Sum_probs=204.1

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEE
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI   89 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~v   89 (397)
                      +|.++++..+.+..+.            ...+...++++.+++++|.+++++++++|+++|+..++.++.    ++||+|
T Consensus        35 ~~~~~~~~~~~~~~~~------------g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~----~~gd~V   98 (346)
T TIGR03576        35 GFKIDEEDLELLETYV------------GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE----PPGRKV   98 (346)
T ss_pred             ChhHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC----CCCCEE
Confidence            6888888888887642            123678999999999999988899999999999999999998    899999


Q ss_pred             EEc---CCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccc---ccHHHHHHHHH
Q psy8850          90 ITV---QTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI---QPILEIGELCR  163 (397)
Q Consensus        90 l~~---~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~---~~l~~i~~l~~  163 (397)
                      +++   .+.|+++...+...   |.++...       .++++++.  .+++++|+++. .+++|.+   .++++|+++|+
T Consensus        99 li~~~d~p~~~s~~~~~~l~---ga~~~~~-------~~l~~l~~--~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~  165 (346)
T TIGR03576        99 VHYLPEKPAHPSIPRSCKLA---GAEYFES-------DELSELKK--IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAK  165 (346)
T ss_pred             EECCCCCCCchhHHHHHHHc---CCEEecc-------CCHHHHhh--CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHH
Confidence            874   46888887777666   7765322       14555433  35678888865 6889988   56889999999


Q ss_pred             hcCcEEEEecccccCccc-cc---cCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850         164 SKGVIFHCDAAQAVGKID-IN---IQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       164 ~~gi~livD~a~~~~~~~-~~---~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
                      +||++|++|++|+.+... .+   ....+.|+++.|++| +.|+. .|+++++++..+.+......      +..+ .+.
T Consensus       166 ~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r-~G~v~~~~~li~~l~~~~~~------~~~s-~~~  237 (346)
T TIGR03576       166 SKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPR-GGLLAGRKELVDKIKSVGEQ------FGLE-AQA  237 (346)
T ss_pred             HcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccc-eEEEEeCHHHHHHHHHhhcC------cccC-ccH
Confidence            999999999999965421 11   122357899999999 55776 59999998766665544322      1222 344


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHH-HHHhC--CcEe
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL-LMAIK--DIAV  315 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~--~i~~  315 (397)
                      +...+..++|+...  .+...+.+.++.+.+.+.+.+ +.   +...+    .+++.+.++..++.++ ...|.  +|.+
T Consensus       238 ~~~~aa~~aL~~~~--~~~~~~~l~~r~~~~~~~l~~-~~---~~~~~----~~f~~~~~~~~~~~~~~~~ll~~~gV~v  307 (346)
T TIGR03576       238 PLLAAVVRALEEFE--LSRIRDAFKRKEEVYLRLFDK-LN---VERTP----TGFVIKGVEEEKLIEIGLDLLRNYGIIT  307 (346)
T ss_pred             HHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHh-CC---CCcCC----CeEEEEeCCCCCHHHHHHHHHHhCCEEE
Confidence            45555567776533  245567777777777777765 32   22222    2355566653333333 34443  8999


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHH---HHHHHHHHHHHHH
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK---EIDFTIKLLKMKV  370 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~---~i~~~~~~l~~~~  370 (397)
                      .++..+..                  .++++||+++.  +++   ++++++++|++.+
T Consensus       308 ~~~~~f~~------------------~~~~vRis~~~--~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       308 ITAVGMPG------------------ASKTLRFDLAA--KDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             eCCcccCC------------------CCCeEEEEEec--ChHHhcCHHHHHHHHHhcc
Confidence            98754321                  13799999984  333   7999999998754

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.93  E-value=1.3e-23  Score=198.32  Aligned_cols=311  Identities=17%  Similarity=0.141  Sum_probs=203.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV  113 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v  113 (397)
                      +++...+...++++.++++.|.+  ..++++||+.|+..++.++.    ++||+|+++++.|+++...+.. +...|.++
T Consensus        51 ysr~~~p~~~~le~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v  124 (418)
T TIGR01326        51 YSRLMNPTTDVLEQRIAALEGGV--AALAVASGQAAITYAILNLA----QAGDNIVSSSYLYGGTYNLFKHTLKRLGIEV  124 (418)
T ss_pred             eECCCChhHHHHHHHHHHHhCCC--eEEEEccHHHHHHHHHHHHh----CCCCEEEEECCCcHHHHHHHHHHHHHcCcEE
Confidence            33444556789999999999975  68889999999999998887    7899999999999887766544 33459999


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS  193 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~  193 (397)
                      +.++.+     |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++++.+... +....++|+++
T Consensus       125 ~~v~~~-----d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~-~~l~~g~Divv  198 (418)
T TIGR01326       125 RFVDPD-----DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLC-RPIDHGADIVV  198 (418)
T ss_pred             EEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcC-CchhcCCeEEE
Confidence            998854     899999999999999999999999999999999999999999999999999866432 22234799999


Q ss_pred             eccccccCCCC--ceEEEEecCCCC-ccccccccC-Ccc------------------------ccccCCCCchhHHHHHH
Q psy8850         194 FSAHKIYGPKG--IGALYIRRNPRT-RIEAQIHGG-GHE------------------------YGLRSGTLATHQIVGMG  245 (397)
Q Consensus       194 ~s~~K~~g~~g--~g~~~~~~~~~~-~~~~~~~~~-~~~------------------------~~~~~~~~~~~~~~~l~  245 (397)
                      .|++|++++.|  +|++++++.... .......-. ...                        .....+..+....+-+.
T Consensus       199 ~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~  278 (418)
T TIGR01326       199 HSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLL  278 (418)
T ss_pred             ECccccccCCccceEEEEEecccccccccccccccCCCCccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999666545  677777543211 110000000 000                        00000000000111010


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCC-C-hHHHHH
Q psy8850         246 EAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI-E-GESLLM  308 (397)
Q Consensus       246 ~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-~-~~~~~~  308 (397)
                      ..++    .+..+.++..++...+.+.|.+ .+++..+.-|+               ...++++.|.+++. . ..++.+
T Consensus       279 ~~l~----tl~~R~~~~~~~a~~la~~L~~-~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~  353 (418)
T TIGR01326       279 QGLE----TLSLRMERHVENALKVAEFLEA-HPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFID  353 (418)
T ss_pred             CCcc----cHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecCCHHHHHHHHH
Confidence            1111    2344456666777888888888 77765332211               23466888888642 1 345666


Q ss_pred             HhC--CcEecccCccCC----CCCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         309 AIK--DIAVSSGSACTS----ASLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       309 ~l~--~i~~~~g~~~~~----~~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .|+  ....+-|...+.    ..+.+    ....+..|+.+    +.||||++.    |++|.+++.|.+++
T Consensus       354 ~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~Al  417 (418)
T TIGR01326       354 ALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTP----GLIRLSVGI----ENIDDIIADLEQAL  417 (418)
T ss_pred             hCCcceeccccCCCCceeeCCCCCCcccCCHHHHHhcCCCC----CeEEEEecC----CCHHHHHHHHHHhh
Confidence            666  444444443332    11111    12234566664    899999997    56777777777654

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.93  E-value=7.8e-24  Score=196.89  Aligned_cols=331  Identities=19%  Similarity=0.173  Sum_probs=217.7

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEE
Q psy8850          11 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHII   90 (397)
Q Consensus        11 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl   90 (397)
                      ++.++++.+.+.+-+      ....    .....++++.+++++|.+  .++.++|||.|+.+++.++..   ++|++|+
T Consensus         5 ~e~~~~v~~~l~s~~------~~~~----g~~~~~fE~~~a~~~g~~--~~~~~~sgt~Al~~al~~l~~---~~gdeVi   69 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGW------LSTY----GPYVEEFEKEFAEYFGVK--YAVAVSSGTSALHLALRALGL---GPGDEVI   69 (363)
T ss_dssp             HHHHHHHHHHHHHTC------CSSS----SHHHHHHHHHHHHHHTSS--EEEEESSHHHHHHHHHHHTTG---GTTSEEE
T ss_pred             HHHHHHHHHHHHhCC------ccCC----CHHHHHHHHHHHHHhCCC--eEEEeCChhHHHHHHHHhcCC---CcCceEe
Confidence            466777777776621      1110    246888999999999977  899999999999999999765   6899999


Q ss_pred             EcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEE
Q psy8850          91 TVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIF  169 (397)
Q Consensus        91 ~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~l  169 (397)
                      ++...++++..++...   |.++++++++ +++.+|++++++++++++++|+++|.   -|...++++|.++|+++|++|
T Consensus        70 ~p~~t~~~~~~ai~~~---G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~l  143 (363)
T PF01041_consen   70 VPAYTFPATASAILWA---GAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIPL  143 (363)
T ss_dssp             EESSS-THHHHHHHHT---T-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-EE
T ss_pred             cCCCcchHHHHHHHHh---ccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCcE
Confidence            9999999999999988   9999999999 78999999999999999999999987   699999999999999999999


Q ss_pred             EEecccccCcccccc-CcccccEEEeccc--cccCCCCceEEEEecCCC-CccccccccCCc---cccccCC---CCchh
Q psy8850         170 HCDAAQAVGKIDINI-QNYKVDLMSFSAH--KIYGPKGIGALYIRRNPR-TRIEAQIHGGGH---EYGLRSG---TLATH  239 (397)
Q Consensus       170 ivD~a~~~~~~~~~~-~~~~~d~~~~s~~--K~~g~~g~g~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~---~~~~~  239 (397)
                      |.|++|+.|...-+. ....-|+.++||+  |.......|+++.+++.. ++++.+...+..   ...+...   ..| .
T Consensus       144 IeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n-~  222 (363)
T PF01041_consen  144 IEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYN-F  222 (363)
T ss_dssp             EEE-TTTTT-EETTEETTSSSSEEEEESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B--
T ss_pred             EEccccccCceeCCEeccCCCCceEecCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcc-c
Confidence            999999988753221 1113488888885  644433358888876532 233222111110   0001000   011 1


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC---CCCceEEEEecCC---ChHHHHHHhC-
Q psy8850         240 QIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN---RIPHNLNISFNFI---EGESLLMAIK-  311 (397)
Q Consensus       240 ~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~l~-  311 (397)
                      .+-.+.+++-.. .+.+++..++.+++.+++.+.|.+ ++++.....+..   ...+.+.+.+++.   +..++.+.|. 
T Consensus       223 rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~  301 (363)
T PF01041_consen  223 RMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAG-IPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRA  301 (363)
T ss_dssp             B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTT-GTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCcccccccccccccccccccccccccccchHHHHHHHHHH
Confidence            111122222221 235677888888999999999999 888766544332   2345667777653   5778888887 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhC--------CCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALG--------CNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g--------~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                       ||...... ..+....  ..++...        .........|.+.+....+.++++++++.|+
T Consensus       302 ~GI~~~~~~-~~pl~~~--~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  302 RGIETRPHY-PKPLHRQ--PVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             TTBEEBCST-SSCGGGS--GGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             CCCcccccc-cCchhhh--HHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence             78777654 1111000  1111111        0112235789999999999999999999875

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.93  E-value=1.7e-23  Score=206.48  Aligned_cols=311  Identities=12%  Similarity=0.129  Sum_probs=211.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeC-ChhHHHHHHHHHhHhhhc----cCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          39 AEKAIEKARNEVAQLIYADPREIIWTS-GATESNNLAIKGAAHFYK----KRGKHIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        39 ~~~~~~~~~~~la~~~~~~~~~i~~~~-g~t~a~~~~l~~l~~~~~----~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      .-+.+.++++++++++|.+.  +.+.+ +|++|..++++++...+.    ..+++|+++...|+++...+...   |+++
T Consensus       541 ~lq~i~elq~~l~eLtGmd~--~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~---GieV  615 (954)
T PRK12566        541 YRAMIDELEAWLCAITGFDA--ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMA---GMRV  615 (954)
T ss_pred             HHHHHHHHHHHHHHHHCCCe--EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHC---CCEE
Confidence            34688899999999999984  45555 666777677777653221    23578999999998887665554   9999


Q ss_pred             EEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccc-cCcccc
Q psy8850         114 TYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-IQNYKV  189 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~-~~~~~~  189 (397)
                      +.+|++++|.+|+++|+++++   +++++|.++++++-++...|+++|+++||++|+++++|+++..+...++ ...+++
T Consensus       616 v~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GA  695 (954)
T PRK12566        616 VIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGA  695 (954)
T ss_pred             EEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCC
Confidence            999999899999999999997   6788899999988877777799999999999999999999987776665 467899


Q ss_pred             cEEEecccc-ccCCCCceEEEEec-CCCCccccccccCC---c-cccccCCCC-c--hhHHHHHHHHHHHHHH-H--HHH
Q psy8850         190 DLMSFSAHK-IYGPKGIGALYIRR-NPRTRIEAQIHGGG---H-EYGLRSGTL-A--THQIVGMGEAFRLARI-E--MKE  257 (397)
Q Consensus       190 d~~~~s~~K-~~g~~g~g~~~~~~-~~~~~~~~~~~~~~---~-~~~~~~~~~-~--~~~~~~l~~al~~~~~-~--~~~  257 (397)
                      |++++|+|| +++|.|.|..++.. ...+.+.+++.++.   . ..+-+.++. +  +.+...+..+..++.. |  +.+
T Consensus       696 Di~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~eLk~  775 (954)
T PRK12566        696 DVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQLAD  775 (954)
T ss_pred             CEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHHHHH
Confidence            999999999 66677666655544 22333333333221   0 000011222 1  1121112233333322 2  444


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec------CCChHHHHHHhC--CcEecccCccCCCCCChh
Q psy8850         258 ELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN------FIEGESLLMAIK--DIAVSSGSACTSASLEPS  329 (397)
Q Consensus       258 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~  329 (397)
                      .......+++++.+.|.+ ..++.. .+......+-+.+.+.      +.+..++.++|.  |+....  ...+      
T Consensus       776 aa~~ailnAnYla~rL~~-~~~v~~-~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt--~~fP------  845 (954)
T PRK12566        776 ASEVAILSANYLANQLGG-AFPVLY-RGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPT--MSFP------  845 (954)
T ss_pred             HHHHHHHHHHHHHHHhHh-hCCCCc-CCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeE--Eeec------
Confidence            444456788999999977 334333 2211111233334433      245577888876  444322  1111      


Q ss_pred             hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       330 ~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                                  ..+.+||+++.+++++|||+++++|+.+.+++++.
T Consensus       846 ------------v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~v  880 (954)
T PRK12566        846 ------------VPGTLMVEPTESESKAELDRFVEAMLSIRAEIGKV  880 (954)
T ss_pred             ------------cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence                        13789999999999999999999999999998774

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.93  E-value=6.3e-25  Score=198.35  Aligned_cols=219  Identities=18%  Similarity=0.199  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN  120 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~  120 (397)
                      ..+.++++.+++++|++ +.+++++|+|.|+..++.++.    ++||+|+++.++|.+...++...   |.+++.++.+.
T Consensus        59 g~i~~~~~~~A~~~ga~-~~~~~~~Gst~a~~~~l~al~----~~gd~Vlv~~~~h~s~~~~~~~~---g~~~~~v~~~~  130 (294)
T cd00615          59 GPIKEAQELAARAFGAK-HTFFLVNGTSSSNKAVILAVC----GPGDKILIDRNCHKSVINGLVLS---GAVPVYLKPER  130 (294)
T ss_pred             hHHHHHHHHHHHHhCCC-CEEEEcCcHHHHHHHHHHHcC----CCCCEEEEeCCchHHHHHHHHHC---CCEEEEecCcc
Confidence            36889999999999986 346669999999999999887    79999999999999999888776   88999887753


Q ss_pred             C------CCCCHHHHHHHhcC--CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccC-----ccccccCcc
Q psy8850         121 N------GLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG-----KIDINIQNY  187 (397)
Q Consensus       121 ~------~~~d~~~l~~~i~~--~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~-----~~~~~~~~~  187 (397)
                      +      +.+|++++++++++  ++++++++++ |++|.+.|+++|+++|+++|+++++|++|+..     ..+.+....
T Consensus       131 ~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~  209 (294)
T cd00615         131 NPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA  209 (294)
T ss_pred             CcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhc
Confidence            2      37899999999964  6889999987 78999999999999999999999999999842     233344445


Q ss_pred             cccEEEecccc-ccCCCCceEEEEecCCCCc--cccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         188 KVDLMSFSAHK-IYGPKGIGALYIRRNPRTR--IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILF  264 (397)
Q Consensus       188 ~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~  264 (397)
                      ++|+++.|+|| +.|+.+.|+++++++....  +....      ..+..++++...++++..+++++.....++.++..+
T Consensus       210 ~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~------~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~  283 (294)
T cd00615         210 GADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEAL------NLHQSTSPSYLILASLDVARAMMALEGKELVEELIE  283 (294)
T ss_pred             CCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHH------HHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            89999999999 6666666887777542221  11111      224467888899999999998876555667788888


Q ss_pred             HHHHHHHHHh
Q psy8850         265 LQKRLYNGLM  274 (397)
Q Consensus       265 ~~~~l~~~l~  274 (397)
                      +.+.+++.|.
T Consensus       284 ~~~~~r~~l~  293 (294)
T cd00615         284 LALYARQEIN  293 (294)
T ss_pred             HHHHHHHHHh
Confidence            8888888775

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.93  E-value=1.1e-23  Score=194.06  Aligned_cols=308  Identities=20%  Similarity=0.182  Sum_probs=210.0

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g  110 (397)
                      .+.+++...+....+++.|+++-|.+  ..++++||..|+.+++.+++    ++||+|+++...|..+...+.. +.+.|
T Consensus        46 ~~~Y~R~gnPt~~~le~~la~Le~g~--~a~~~~SGmaAi~~~l~~ll----~~Gd~iv~~~~~Y~~t~~~~~~~l~~~g  119 (386)
T PF01053_consen   46 GYIYSRYGNPTVRALEQRLAALEGGE--DALLFSSGMAAISAALLALL----KPGDHIVASDDLYGGTYRLLEELLPRFG  119 (386)
T ss_dssp             SCSBTTTC-HHHHHHHHHHHHHHT-S--EEEEESSHHHHHHHHHHHHS-----TTBEEEEESSSSHHHHHHHHHCHHHTT
T ss_pred             CcceeccccccHHHHHHHHHHhhccc--ceeeccchHHHHHHHHHhhc----ccCCceEecCCccCcchhhhhhhhcccC
Confidence            46667777889999999999999985  68889999999999999888    7899999999999999988886 45569


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcC-cEEEEecccccCccccccCcccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG-VIFHCDAAQAVGKIDINIQNYKV  189 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g-i~livD~a~~~~~~~~~~~~~~~  189 (397)
                      +++..++..     |++++++++++++++|+++.|.||+..+.|++.|+++||++| +++++|++.+.+.. .+...+++
T Consensus       120 v~v~~~d~~-----d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~-~~pL~~Ga  193 (386)
T PF01053_consen  120 VEVTFVDPT-----DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYN-QNPLELGA  193 (386)
T ss_dssp             SEEEEESTT-----SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTT-C-GGGGT-
T ss_pred             cEEEEeCch-----hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceee-eccCcCCc
Confidence            999999765     899999999999999999999999999999999999999998 99999999886643 23334589


Q ss_pred             cEEEeccccccCCCC---ceEEEEec--CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHKIYGPKG---IGALYIRR--NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILF  264 (397)
Q Consensus       190 d~~~~s~~K~~g~~g---~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~  264 (397)
                      |+++.|.+|++++.+   .|++++++  +....+.....       ....+.+....+.+...++    .+.-+.++..+
T Consensus       194 Divv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~-------~~G~~~~p~da~ll~rgl~----Tl~~R~~~~~~  262 (386)
T PF01053_consen  194 DIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRR-------LLGATLSPFDAWLLLRGLR----TLPLRMERQNE  262 (386)
T ss_dssp             SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHH-------HHT-B--HHHHHHHHHHHT----THHHHHHHHHH
T ss_pred             eEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhh-------hcCccchHHHHHHHhcCCC----cHHHHHHHHHH
Confidence            999999999555444   57777764  23222222110       0111222222222222222    35667888889


Q ss_pred             HHHHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCC--hHHHHHHhC--CcEecccCccC----
Q psy8850         265 LQKRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIE--GESLLMAIK--DIAVSSGSACT----  322 (397)
Q Consensus       265 ~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~l~--~i~~~~g~~~~----  322 (397)
                      ++..+.+.|++ .|.+.-+..|.              ...++++.|.+++..  ...+.+.|+  .....-|...+    
T Consensus       263 nA~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~  341 (386)
T PF01053_consen  263 NAEALAEFLEE-HPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSLGGVESLISH  341 (386)
T ss_dssp             HHHHHHHHHHT-STTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-SSSS-EEEE
T ss_pred             HHHHHHHHHHh-CCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhcCCccccccc
Confidence            99999999999 77775332221              133568888887532  356666766  23444444332    


Q ss_pred             CCCCC----hhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         323 SASLE----PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       323 ~~~~~----~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      |..+.    +....+..|+.+    +.||+|++.    |+.+.+++.|+++++
T Consensus       342 p~~~~h~~~~~e~~~~~Gi~~----~liRlSvGl----Ed~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  342 PASTSHRSLSPEERAEAGISD----GLIRLSVGL----EDPDDLIADLEQALE  386 (386)
T ss_dssp             TTCTTTTTSCHHHHHHTTS-T----TEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred             ccchhhccCChhhhhccCCCC----CeeEEEecc----CCHHHHHHHHHHhcC
Confidence            21111    123356677765    899999997    778888888887764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK08637 hypothetical protein; Provisional

Probab=99.93  E-value=9.1e-24  Score=198.60  Aligned_cols=320  Identities=13%  Similarity=0.078  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-----CCC---CcEEEeCChhHHHHHHHHHhHhhh
Q psy8850          11 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-----ADP---REIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus        11 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~---~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      +-+.+++.+.+.... .+    ...+|.......++|+.+++++.     ..+   ++|++|+|+++|+.+++.++.   
T Consensus        19 ~~~~~~~~~~~~~~~-~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~---   90 (388)
T PRK08637         19 PMYLSSLQDLLNDLT-PD----EIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV---   90 (388)
T ss_pred             cchHHHHHHHHHhhc-cc----cccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc---
Confidence            356666666555421 11    11223334456777777776652     222   468999999999999999888   


Q ss_pred             ccCCCEEEEcCCCChhhHHHHH-HHhhCCcEEEEeccC-CCCCCCHHHHHHHhc----CCceEEEEecccCcccccccH-
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIR-KLENDGFRVTYLKPK-NNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPI-  155 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~-~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l-  155 (397)
                       ++||.|++.+|+|+.+...+. ..   |.+++.+|.. +++.+|+++++++++    +.+.++++++||||||.+++. 
T Consensus        91 -~~gd~Vlv~~P~y~~~~~~~~~~~---g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~  166 (388)
T PRK08637         91 -DQGDTVLLPDHNWGNYKLTFNTRR---GAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEK  166 (388)
T ss_pred             -CCCCEEEEcCCCCccHHHHHHHhc---CCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHH
Confidence             799999999999999987654 34   8999999983 455689999999886    455677888999999999984 


Q ss_pred             --HHHHHHHHh-----cCcEEEEecccccCc----cccc----cCcc-ccc--EEEeccccccCCCC--ceEEEEec---
Q psy8850         156 --LEIGELCRS-----KGVIFHCDAAQAVGK----IDIN----IQNY-KVD--LMSFSAHKIYGPKG--IGALYIRR---  212 (397)
Q Consensus       156 --~~i~~l~~~-----~gi~livD~a~~~~~----~~~~----~~~~-~~d--~~~~s~~K~~g~~g--~g~~~~~~---  212 (397)
                        ++|+++|++     |+++||+|++|....    ...+    +... +..  +.+.|++|.++.+|  +|++++..   
T Consensus       167 ~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~  246 (388)
T PRK08637        167 EATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAG  246 (388)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccC
Confidence              567777765     899999999986221    1111    1111 121  23459999555445  78887653   


Q ss_pred             ---CCCCccccccccCCccccccCCCCchhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhc---CcEEEeC
Q psy8850         213 ---NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKEELKRILFLQKRLYNGLMESI---EEIYING  284 (397)
Q Consensus       213 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~  284 (397)
                         +..+.+.......   ........+.....++..+++.  +..++.+....++++.+.+.+.|.. .   +++.+..
T Consensus       247 ~~~~l~~~~~~~~~~~---~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~-~~~~~~~~~~~  322 (388)
T PRK08637        247 SSQTVKEALEKKVKGL---IRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYD-GKYDDAWQAYP  322 (388)
T ss_pred             CcHHHHHHHHHHHHHH---hhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCccccc
Confidence               2222222110000   0001112333444444455532  2233455566677777788888866 3   1344444


Q ss_pred             CCCCCCCceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHH
Q psy8850         285 DMNNRIPHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDF  361 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~  361 (397)
                      +.+   +.++++.+++.++.++.+.+.   ||.+...                       .++++||+++. .+.+++++
T Consensus       323 ~~~---g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~~-----------------------~~~~iRi~~~~-~~~~~i~~  375 (388)
T PRK08637        323 FNS---GYFMCLKLKGVDAEELRVHLLEKYGIGTIAL-----------------------NETDLRIAFSC-VEEEDIPE  375 (388)
T ss_pred             ccc---eEEEEecCChHHHHHHHHHHhhhcceEEEec-----------------------cCCceEEEeec-CCHHHHHH
Confidence            322   445666666445567777762   6765421                       13789999986 67999999


Q ss_pred             HHHHHHHHHHHH
Q psy8850         362 TIKLLKMKVKKL  373 (397)
Q Consensus       362 ~~~~l~~~~~~~  373 (397)
                      ++++|.++++.+
T Consensus       376 ~~~~l~~~~~~~  387 (388)
T PRK08637        376 LFDSIYKAIKDL  387 (388)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988765

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.93  E-value=1.2e-23  Score=193.32  Aligned_cols=267  Identities=13%  Similarity=0.050  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCC
Q psy8850          44 EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL  123 (397)
Q Consensus        44 ~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~  123 (397)
                      ..+++.|+++++.  ++|++|+|+++|+.+++.  .    .+||+|++.+|+|+.+...++.+   |.+++.+|.+    
T Consensus        52 ~~Lr~~ia~~~~~--~~I~it~Gs~~al~~~~~--~----~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~v~~~----  116 (330)
T PRK05664         52 DGLEAAARAYYGA--PQLLPVAGSQAAIQALPR--L----RAPGRVGVLSPCYAEHAHAWRRA---GHQVRELDEA----  116 (330)
T ss_pred             HHHHHHHHHHhCC--CCEEECcCHHHHHHHHHH--c----cCCCEEEEcCCChHHHHHHHHHc---CCeEEEechh----
Confidence            6789999999986  489999999999988753  3    58999999999999999888887   9999988754    


Q ss_pred             CCHHHHHHHhcCCceEEEEecccCcccccccH---HHHHHHHHhcCcEEEEecccccCcc--c-cccCcccccEEEeccc
Q psy8850         124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI--D-INIQNYKVDLMSFSAH  197 (397)
Q Consensus       124 ~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~--~-~~~~~~~~d~~~~s~~  197 (397)
                          ++++++ ++++++++++|+||||.+++.   ++|+++|+++|++||+|++|.....  + .++...+..+++.|++
T Consensus       117 ----~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfS  191 (330)
T PRK05664        117 ----EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFG  191 (330)
T ss_pred             ----hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeecc
Confidence                355555 367888999999999999995   4566667899999999999863321  1 1222123458899999


Q ss_pred             cccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8850         198 KIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME  275 (397)
Q Consensus       198 K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~  275 (397)
                      |.+|.+|  +|+++++++....+......         ...+.....+...+++.. ...++.++.+.++++++.+.|++
T Consensus       192 K~~gl~GlRiG~~v~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~r~~l~~~L~~  261 (330)
T PRK05664        192 KFFGLAGARLGFVLAEPALLRALAELLGP---------WTVSGPTRWLAQAALADT-PWQRRQRERLLAASQRLAALLRR  261 (330)
T ss_pred             ccccCCCcceEEEEeCHHHHHHHHHhcCC---------CCCCHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9766445  79999887665555433211         112223333444555432 23566788888999999999998


Q ss_pred             hcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC
Q psy8850         276 SIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF  353 (397)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~  353 (397)
                       + ++.   +.+ ....++++.++  +..++.+.|.  ||.+..   |..                   .++|||+++. 
T Consensus       262 -~-~~~---~~~-~~~~f~~~~~~--~~~~~~~~l~~~gi~v~~---f~~-------------------~~~iRis~~~-  310 (330)
T PRK05664        262 -H-GLT---PAG-GCALFQWVRTE--DAAALHEFLARRGILTRL---FEQ-------------------PASLRFGLPA-  310 (330)
T ss_pred             -C-CCc---ccC-CcceEEEEecC--CHHHHHHHHHHCCeEEEE---CCC-------------------CCeEEEECCC-
Confidence             4 432   111 11234444443  5667777765  888852   111                   2789999985 


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy8850         354 TTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       354 ~~~~~i~~~~~~l~~~~~~  372 (397)
                       +.++++++.++|+++.++
T Consensus       311 -~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        311 -DEADWARLDQALLAYRKE  328 (330)
T ss_pred             -CHHHHHHHHHHHHHHHhh
Confidence             678899999999877654

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.93  E-value=2.1e-23  Score=194.23  Aligned_cols=323  Identities=15%  Similarity=0.090  Sum_probs=227.4

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh-------
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF-------   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~-------   81 (397)
                      -+|+++++..+.+.++...+.  ....-........++++.|++++|.+  ..++.++|..|+..++.++...       
T Consensus       117 ~~p~v~~a~~~ai~~yG~g~~--gSrl~~G~~~~h~~LE~~LA~f~g~e--~all~sSGy~AN~~~i~aL~~~~~~~~~~  192 (476)
T PLN02955        117 SHPTISNAAANAAKEYGMGPK--GSALICGYTTYHRLLESSLADLKKKE--DCLVCPTGFAANMAAMVAIGSVASLLAAS  192 (476)
T ss_pred             CCHHHHHHHHHHHHHcCCCCC--CcCccccChHHHHHHHHHHHHHHCCC--cEEEECChHHHHHHHHHHHhhcccccccc
Confidence            478999999999987542222  12222233457889999999999987  5777788888999998887311       


Q ss_pred             ---hccCCCEEEEcCCCChhhHHHHHHHhhC-CcEEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCccccccc
Q psy8850          82 ---YKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        82 ---~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g~~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~  154 (397)
                         ..++++.|+.....|.|....+...... +.++..++.+     |+++|++++..   +.++|+++...++.|.+.|
T Consensus       193 ~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiap  267 (476)
T PLN02955        193 GKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAP  267 (476)
T ss_pred             ccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCC
Confidence               0145678999999999999998876443 4777777766     89999988853   4578889999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCcccc---------ccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccC
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~~---------~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      +++|.++|++||+.+|+|++|++|....         ++. .+.|+++.|++|.+|..| |++.++++..+.+...... 
T Consensus       268 L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~~G-Gfi~gs~~~~~~l~~~~~~-  344 (476)
T PLN02955        268 MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCHG-GFIACSKKWKQLIQSRGRS-  344 (476)
T ss_pred             HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccchhccC-ceeecHHHHHHHHHHhCCC-
Confidence            9999999999999999999999665422         221 267899999999888765 8998887655544432111 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChH
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE  304 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  304 (397)
                         ..|. +..+....++..++++.+... +.+++++.++.+++++.+     ++.+    .   ..++.+.+.. ....
T Consensus       345 ---~ifS-talpp~~aaa~laal~l~~~~-~~~r~~L~~n~~~fr~~~-----G~~~----~---sPI~pI~ig~~~~a~  407 (476)
T PLN02955        345 ---FIFS-TAIPVPMAAAAYAAVVVARKE-KWRRKAIWERVKEFKALS-----GVDI----S---SPIISLVVGNQEKAL  407 (476)
T ss_pred             ---Ceec-ccccHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhc-----CCCC----C---CCEEEEEeCCHHHHH
Confidence               1111 234445555666788877543 346677777777777632     2221    1   3455555543 2345


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      .+.+.|.  |+.+.+-.+..                .+.+...+||+++..++++||++++++|.++.+.+..+
T Consensus       408 ~~~~~L~~~Gi~v~~i~yPt----------------VP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~~~~  465 (476)
T PLN02955        408 KASRYLLKSGFHVMAIRPPT----------------VPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFDNTA  465 (476)
T ss_pred             HHHHHHHHCCCEEEEECCCC----------------CCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhhcce
Confidence            5677775  77776543221                12334679999999999999999999999987666443

>PRK10534 L-threonine aldolase; Provisional

Probab=99.93  E-value=7.1e-24  Score=195.66  Aligned_cols=301  Identities=14%  Similarity=0.153  Sum_probs=197.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .|+|.+.+++.+......      .    |.......++++.|++++|.++  +.+++||++++..++.++.    .+|+
T Consensus        11 ~p~~~~~~a~~~~~~~~~------~----Y~~~~~~~~L~~~la~~~g~~~--~~v~~~g~~a~~~~l~~~~----~~gd   74 (333)
T PRK10534         11 RPSRAMLEAMMAAPVGDD------V----YGDDPTVNALQDYAAELSGKEA--ALFLPTGTQANLVALLSHC----ERGE   74 (333)
T ss_pred             CCCHHHHHHHHhccCCCc------c----cCCCHHHHHHHHHHHHHhCCCe--EEEeCchHHHHHHHHHHhc----CCCC
Confidence            378899999876443211      1    1224468899999999999874  4678888888888877766    7899


Q ss_pred             EEEEcCCCChhhHHH--HHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHH---
Q psy8850          88 HIITVQTEHKSVLDS--IRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPIL---  156 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~--~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~---  156 (397)
                      +|+++.+.|......  ....  .+.+++.++.+.++.+|+++|++++++      ++++|++++++  +|.+.|.+   
T Consensus        75 ~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~  150 (333)
T PRK10534         75 EYIVGQAAHNYLYEAGGAAVL--GSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLK  150 (333)
T ss_pred             eeEEechhhhhHhcCCchHHh--cCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHH
Confidence            999888877543322  1222  136778888777788999999999976      58899998655  69999965   


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---ccccC--cccccEEEeccccccCCCCce-EEEEecCCCCccccccccCCcccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQ--NYKVDLMSFSAHKIYGPKGIG-ALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~--~~~~d~~~~s~~K~~g~~g~g-~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +|.++|++||++|++|++|.++..   .....  ....|.++.|+||.+|.. .| +++.+++..+.+......+     
T Consensus       151 ~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~-~G~~~~~~~~~i~~~~~~~~~~-----  224 (333)
T PRK10534        151 QAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP-VGSLLVGNRDYIKRARRWRKMT-----  224 (333)
T ss_pred             HHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc-ccceEEcCHHHHHHHHHHHHHh-----
Confidence            556789999999999999774321   11110  012466667899966653 46 5767776655554332210     


Q ss_pred             ccCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHH
Q psy8850         231 LRSGTLAT--HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLM  308 (397)
Q Consensus       231 ~~~~~~~~--~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (397)
                        .+..+.  ....+..++++.    ..+..++..+.++++.+.|++ + ++.+..+ .   .+++.+.++..+..++.+
T Consensus       225 --~~~~~~~~~~~a~~~~~l~~----~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~-~---~nfv~~~~~~~~~~~~~~  292 (333)
T PRK10534        225 --GGGMRQAGILAAAGLYALKH----NVARLQEDHDNAAWLAEQLRE-A-GADVMRQ-D---TNMLFVRVGEEQAAALGE  292 (333)
T ss_pred             --CCchhhHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHh-C-CCccCCC-C---ceEEEEECCchhHHHHHH
Confidence              001111  112211223332    123334455567899999998 4 6665543 2   456666665334556666


Q ss_pred             HhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         309 AIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       309 ~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      .|.  ||.+.++                         ..+|++...-++++++++++++|++++.
T Consensus       293 ~l~~~gi~v~~~-------------------------~~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        293 YMRERNVLINAS-------------------------PIVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             HHHHcCeeecCC-------------------------ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            665  8888765                         3578877655789999999999987654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.93  E-value=2.9e-23  Score=208.89  Aligned_cols=324  Identities=12%  Similarity=0.076  Sum_probs=234.7

Q ss_pred             CCCCCCC----CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHH
Q psy8850           2 DYSATTP----IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG   77 (397)
Q Consensus         2 ~~~~~~~----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~   77 (397)
                      |+.+.+.    .|+.+.+++.+...-+-.+.-. +.-.+...-+.+.+++..++++.|++++++.++.++|.+.++++++
T Consensus       106 ~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPY-qaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a  184 (993)
T PLN02414        106 SYIGMGYYNTHVPPVILRNILENPGWYTQYTPY-QAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMC  184 (993)
T ss_pred             cccCCCCCCccCCHHHHHHHHhChHHHhhcCCC-chHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHH
Confidence            5566666    7888878887655422211111 1111234446788999999999999999999999999999988887


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHH
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~  156 (397)
                      ... ..+++++|++++.+|+++...+....+ .|++++.+|.+...         ...+.+..++ .+..|.+|.+.|++
T Consensus       185 ~~~-~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~---------~~~~~v~~vl-vq~P~~~G~v~dv~  253 (993)
T PLN02414        185 NNI-LKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD---------YSSGDVCGVL-VQYPATDGEVLDYA  253 (993)
T ss_pred             Hhc-ccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc---------cccCceEEEE-EecCCCCeEEcCHH
Confidence            643 112458899999999999999887654 49999999875311         1122333443 44445689999999


Q ss_pred             HHHHHHHhcCcEEEEecccccCcccc-ccCcccccEEEeccccccCCCC-----ceEEEEecCCCCccccccccCC----
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKIDI-NIQNYKVDLMSFSAHKIYGPKG-----IGALYIRRNPRTRIEAQIHGGG----  226 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~~-~~~~~~~d~~~~s~~K~~g~~g-----~g~~~~~~~~~~~~~~~~~~~~----  226 (397)
                      +|+++||++|+++++ +++..+...+ +..++++|+++++.|||++|.|     .|+++++++....+...+.|+.    
T Consensus       254 ~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~PgriVG~s~d~~  332 (993)
T PLN02414        254 EFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSS  332 (993)
T ss_pred             HHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCcccCcccCCC
Confidence            999999999999999 8888777666 4778899999999999765444     7999999876554443333321    


Q ss_pred             -------------ccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC
Q psy8850         227 -------------HEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN  287 (397)
Q Consensus       227 -------------~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  287 (397)
                                   +..+++.++.|.....++.+++...      ..|++++.+++.+++.++.+.|++  .++.+..++ 
T Consensus       333 g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~--~G~~~~~~~-  409 (993)
T PLN02414        333 GKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKK--LGFQVQSLP-  409 (993)
T ss_pred             CCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhh--cCCccCCCC-
Confidence                         1234668899987777776666533      247899999999999999999987  567765542 


Q ss_pred             CCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850         288 NRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL  365 (397)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  365 (397)
                        ....+.|.++  +..++.+.|.  ||.+...                       ..+.+|+|+..++|++|||+++++
T Consensus       410 --~f~~vt~~~~--~~~~v~~~L~~~gI~l~~~-----------------------~~~~lrvs~~e~~T~edId~L~~~  462 (993)
T PLN02414        410 --FFDTVKVKCS--DADAIADAAAKVGINLRVV-----------------------DANTVTVSFDETTTLEDVDKLFKV  462 (993)
T ss_pred             --CcCeEEEecC--CHHHHHHHHHHCCCeeEEe-----------------------cCCeEEEEeeccCCHHHHHHHHHH
Confidence              2446666654  4567777776  6655421                       126799999999999999999999


Q ss_pred             HHH
Q psy8850         366 LKM  368 (397)
Q Consensus       366 l~~  368 (397)
                      |..
T Consensus       463 l~~  465 (993)
T PLN02414        463 FAG  465 (993)
T ss_pred             Hcc
Confidence            973

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.93  E-value=9.6e-24  Score=194.96  Aligned_cols=302  Identities=17%  Similarity=0.130  Sum_probs=201.7

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhC-C
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-G  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g  110 (397)
                      .+.+++...+...+++++++++.+.+  ++++++||++|+.+++. +.    ++||+|+++.+.|......+...... +
T Consensus        45 ~~~Y~R~~~p~~~~le~~lA~leg~~--~~v~~~sG~aAi~~~l~-~l----~~GD~VI~~~~~yg~~~~~~~~~~~~~~  117 (364)
T PRK07269         45 GFDYTRTKNPTRAKLEETLAAIESAD--YALATSSGMSAIVLAFS-VF----PVGSKVVAVRDLYGGSFRWFNQQEKEGR  117 (364)
T ss_pred             CcceeCCCCccHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHH-Hh----CCCCEEEEecCCcCchHHHHHHHHhcCc
Confidence            34555666678899999999999865  79999999999999885 44    79999999999998877554544332 3


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      .++.+       .+|+++++++++++|++|++++|+||+|.+.|+++|+++|+++|+++++|++++.+... .....++|
T Consensus       118 ~~~~~-------~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~-~pl~~gaD  189 (364)
T PRK07269        118 FHFTY-------ANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQ-RPIELGAD  189 (364)
T ss_pred             EEEEe-------cCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-CchhhCCc
Confidence            33222       24899999999999999999999999999999999999999999999999998755432 22345899


Q ss_pred             EEEeccccc-cCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKI-YGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K~-~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      ++++|++|+ .|...  .|+++.+++ ..+++.....       ......+....+-+...|+    .++.+.++..+++
T Consensus       190 ivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~-------~~G~~~s~~~a~l~~~~L~----tL~~r~~~~~~na  258 (364)
T PRK07269        190 IVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLN-------TTGAVLSPFDSYLLMRGLK----TLSLRMERSTANA  258 (364)
T ss_pred             EEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHH-------HhCCCCCHHHHHHHHcCCC----cHHHHHHHHHHHH
Confidence            999999994 44332  477776543 3233321110       0011222222222222333    3566778889999


Q ss_pred             HHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccC----CCCCCh----hhHHHhh
Q psy8850         267 KRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACT----SASLEP----SYVLRAL  335 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~----~~~~~~----~~~~~~~  335 (397)
                      .++.+.|++ .|.+..+.-++  .++++.|.+.+. ....+.+.++  .+..+-|...+    |..+.+    .......
T Consensus       259 ~~~a~~L~~-~p~v~~v~ypg--~gg~~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~  335 (364)
T PRK07269        259 QEVVAFLKK-SPAVKEVLYTG--KGGMISFKVADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSY  335 (364)
T ss_pred             HHHHHHHHh-CCCccEEeCCC--cCcEEEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhc
Confidence            999999988 77754443222  266778877531 1234555555  33344333222    221111    1222345


Q ss_pred             CCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         336 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       336 g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      |+.+    +.||+|++.    |+++.+++.|.+++
T Consensus       336 Gi~~----~liRlsvGl----E~~~dli~dl~~al  362 (364)
T PRK07269        336 GLTD----DLLRLSIGI----EDARDLIADLKQAL  362 (364)
T ss_pred             CCCC----CeEEEEecc----CCHHHHHHHHHHHh
Confidence            5554    899999997    67777777777765

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.93  E-value=5.1e-23  Score=193.76  Aligned_cols=320  Identities=15%  Similarity=0.184  Sum_probs=204.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|.+.+++.+++....... . .     ...+...++.+.|+++.+.  +++++++||++|++.+++++......+
T Consensus        45 lGh~~p~v~~a~~~~~~~~~~~~-~-~-----~~~~~~~~la~~l~~~~~~--~~v~~~~sGseA~~~al~~ar~~~~~~  115 (389)
T PRK01278         45 LGHAHPHLVEALKEQAEKLWHVS-N-L-----YRIPEQERLAERLVENSFA--DKVFFTNSGAEAVECAIKTARRYHYGK  115 (389)
T ss_pred             CCCCCHHHHHHHHHHHHhcCccc-c-c-----cCChHHHHHHHHHHhhCCC--CEEEEcCCcHHHHHHHHHHHHHHHHhc
Confidence            34568999999999987622111 1 1     1123456788888887743  589999999999999999775433344


Q ss_pred             CC----EEEEcCCCChhhHHHHHHHhhCCcEEE-EeccCCCC----CCCHHHHHHHhcCCceEEEEecccCcccc-ccc-
Q psy8850          86 GK----HIITVQTEHKSVLDSIRKLENDGFRVT-YLKPKNNG----LITLSQLEEKICSDTILVSVMLVNNEIGV-IQP-  154 (397)
Q Consensus        86 g~----~vl~~~~~~~s~~~~~~~~~~~g~~v~-~v~~~~~~----~~d~~~l~~~i~~~~~~v~~~~~~~~tG~-~~~-  154 (397)
                      |+    +|++.++.|++................ ..|..++.    ..|++++++++++++++|+++.+++++|. .+| 
T Consensus       116 G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~  195 (389)
T PRK01278        116 GHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPD  195 (389)
T ss_pred             CCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcCCCH
Confidence            44    899999888888766554421100000 01111111    25899999999889999999999999984 444 


Q ss_pred             --HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC
Q psy8850         155 --ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       155 --l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                        +++|.++|++||+++|+|++|+ ++..    ..+.....+|+++  ++| +.++..+|+++++++..+.+.....+  
T Consensus       196 ~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t--~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~--  271 (389)
T PRK01278        196 EFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMA--VAKGIGGGFPLGACLATEEAAKGMTPGTHG--  271 (389)
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEE--EehhccCCcceEEEEEcHHHHhccCCCCCC--
Confidence              7899999999999999999987 2211    1112233567654  559 54333489999987665554332211  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEEecCCCh
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFNFIEG  303 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (397)
                          ...+ .+....++..++++.+.+  ....+++.++.+++++.|++.   .+++  ..... ..+.++.+.+.. +.
T Consensus       272 ----~t~~-~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~v~-g~G~~~~i~~~~-~~  340 (389)
T PRK01278        272 ----STYG-GNPLAMAVGNAVLDVILA--PGFLDNVQRMGLYLKQKLEGLVDRFPDV--IEEVR-GKGLLLGLKCVV-PN  340 (389)
T ss_pred             ----CCCC-ccHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHhhCCCc--eeeEe-cccEEEEEEEec-CH
Confidence                2223 344555555577877643  234455666666666666541   2221  11111 113344555542 46


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .++...|.  ||.+.++.                       .+.+||+++..++++++++++++|.+++++
T Consensus       341 ~~~~~~l~~~GV~~~p~~-----------------------~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~  388 (389)
T PRK01278        341 RDLVQALRDEGLLTVGAG-----------------------DNVVRLLPPLIITEEEIDEALERLERAAES  388 (389)
T ss_pred             HHHHHHHHHCCeEEeecC-----------------------CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence            67776665  78776651                       278999998888999999999999988764

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.93  E-value=5.1e-23  Score=194.69  Aligned_cols=313  Identities=16%  Similarity=0.176  Sum_probs=209.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc----
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK----   83 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~----   83 (397)
                      ..+|.+.+++.+++.... ...+   .   ...+...++++.++++++.+  .+++++||++|++.+++.+.....    
T Consensus        57 h~~~~i~~a~~~~~~~~~-~~~~---~---~~~~~~~~l~~~l~~~~~~~--~~~~~~SGs~A~e~al~~a~~~~~~~~g  127 (401)
T PRK00854         57 HCHPKILAAMVEQAGRLT-LTSR---A---FRNDQLAPLYEELAALTGSH--KVLPMNSGAEAVETAIKAVRKWGYEVKG  127 (401)
T ss_pred             CCCHHHHHHHHHHHhhcc-cccc---c---cCCHHHHHHHHHHHhhCCCC--EEEEeCCcHHHHHHHHHHHHHHHHhccC
Confidence            458999999999997632 1111   0   11346778999999998864  799999999999999998754210    


Q ss_pred             --cCCCEEEEcCCCChhhHHHHHHHhh----------CCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850          84 --KRGKHIITVQTEHKSVLDSIRKLEN----------DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~~~~~~~~~----------~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~  151 (397)
                        ..+++|++....|++.......+..          ....+..+|.     .|++++++++.+++++|++++++||+|.
T Consensus       128 ~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~~~~~aii~e~~~~~~G~  202 (401)
T PRK00854        128 VPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAITPNTVAFLVEPIQGEAGV  202 (401)
T ss_pred             CCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCCeEEEEEccccCCCCC
Confidence              1225666666666554433332210          0122333433     3899999999999999999999999999


Q ss_pred             ccc----HHHHHHHHHhcCcEEEEecccc-cCccc--c--ccCcccccEEEecccc-ccCC-CCceEEEEecCCCCcccc
Q psy8850         152 IQP----ILEIGELCRSKGVIFHCDAAQA-VGKID--I--NIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRIEA  220 (397)
Q Consensus       152 ~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~--~--~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~  220 (397)
                      +.|    +++|.++|++||+++|+|++|+ +|...  +  +.....+|++++|  | +.|. ..+|+++.+++....+..
T Consensus       203 ~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~~~~~l~~  280 (401)
T PRK00854        203 IIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSEVLGVLKP  280 (401)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHHHHhcccC
Confidence            987    8999999999999999999998 44322  1  1222357888876  9 5443 237889988776665543


Q ss_pred             ccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC
Q psy8850         221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF  300 (397)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (397)
                      ...+      ...+ .+....++..++|+.+.+  ....++++++.+++.+.|++ +.. ...... ...+.++.+.+..
T Consensus       281 ~~~~------~t~~-~~~~~~aa~~a~L~~l~~--~~~~~~~~~~~~~l~~~L~~-~~~-~~~~~~-~g~g~~~~i~~~~  348 (401)
T PRK00854        281 GQHG------STFG-GNPLACAVARAALKVLTE--EGMIENAAEMGAYFLEGLRS-IRS-NIVREV-RGRGLMLAVELEP  348 (401)
T ss_pred             CCCC------CCCC-cCHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHh-hcc-CceEEE-eccceEEEEEEec
Confidence            2211      1222 244555666678876654  34678888889999999987 432 111110 1114444555532


Q ss_pred             --CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         301 --IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       301 --~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                        .+..++.+.|.  ||.+.+.                       ..+.+|++++..+++++|++++++|++++.
T Consensus       349 ~~~~~~~~~~~L~~~GV~v~~~-----------------------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        349 EAGGARQYCEALKERGLLAKDT-----------------------HDHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             CchhHHHHHHHHHHCCeEEecC-----------------------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence              23566777765  6766421                       127899999988999999999999998763

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.93  E-value=3.2e-23  Score=182.29  Aligned_cols=335  Identities=19%  Similarity=0.217  Sum_probs=245.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHH-HHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIE-KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||....++.|++++-..+...|  +.|.. .|..|-...+.++ .+.+...++||++-.++... ||++|+..+..+++ 
T Consensus        33 ASEN~~S~aV~~A~gS~ltnKYAEGyPgk-RyYgGce~VD~vE~laierak~LFga~~anVQPh-SGs~AN~av~~All-  109 (413)
T COG0112          33 ASENFTSPAVMEAQGSDLTNKYAEGYPGK-RYYGGCEYVDEVEELAIERAKKLFGAEYANVQPH-SGSQANQAVYLALL-  109 (413)
T ss_pred             eccccCCHHHHHHHhhhhhhccccCCCCc-cccCCCeeHHHHHHHHHHHHHHHhCCCccccCCC-CchHHHHHHHHHHc-
Confidence            3455678999999999888755  68877 4444445554444 48899999999986666654 56689999999999 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCC--cEEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDG--FRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g--~~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~  156 (397)
                         +|||+|+-.+..|+++........-.|  ++++.++++ +++.+|.|++++.+.+ +|++|+.-...++  ...|++
T Consensus       110 ---~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~SaY~--r~id~~  184 (413)
T COG0112         110 ---QPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYS--RPIDFK  184 (413)
T ss_pred             ---CCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECccccc--cccCHH
Confidence               899999988887777765542211112  567777888 6799999999998765 8999987544333  667899


Q ss_pred             HHHHHHHhcCcEEEEecccccCc-----cccccCcccccEEEecccc-ccCCCCceEEEEec-CCCCccccccccCCccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR-NPRTRIEAQIHGGGHEY  229 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~-~~~~~~~~~~~~~~~~~  229 (397)
                      ++.++|.+.|+++++|.+|-.|.     .+-.+.  .+|+++.|.|| +.||.| |+++.++ ++..++....+.+.   
T Consensus       185 ~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~--~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aVFPg~---  258 (413)
T COG0112         185 RFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP--HADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAVFPGL---  258 (413)
T ss_pred             HHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC--ccceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhhcCCcc---
Confidence            99999999999999999997443     332333  49999999999 999986 9998886 45555655444332   


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESL  306 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  306 (397)
                         .|.|..+.+++...++++..+ +++++.+++..+++.|.+.|.+  .|+.+++.  .+..+++.+.+.  +.+..+.
T Consensus       259 ---qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~--~G~~vvsG--gTdnHl~lVDl~~~~~~Gk~a  331 (413)
T COG0112         259 ---QGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKE--RGFKVVSG--GTDNHLVLVDLRSKGLTGKKA  331 (413)
T ss_pred             ---CCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH--cCCeEecC--CccceEEEEEcccCCCCHHHH
Confidence               246777888988888887755 6899999999999999999999  89998873  334667777776  4466676


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~~  372 (397)
                      ...|.  +|.+......+.             ...+.-.+.|||..+..    ..+++++++.+.|.+++..
T Consensus       332 e~~L~~~~It~NKN~iP~D-------------~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         332 EAALERAGITVNKNAIPFD-------------PESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             HHHHHHcCEeeccCCCCCC-------------CCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence            66665  666654322111             01123347799986644    3488998888888877654

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.93  E-value=1.9e-23  Score=193.80  Aligned_cols=294  Identities=14%  Similarity=0.100  Sum_probs=191.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV  113 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v  113 (397)
                      +++...+...+++++++++.  . ++.++++||+.|+..++.++.    ++||+|+++++.|+.+...+.. +...|+++
T Consensus        45 y~ry~~p~~~~Le~~lA~l~--~-~~~v~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v  117 (366)
T PRK07582         45 YGRASNPTWRALEAALGELE--G-AEALVFPSGMAAITAVLRALL----RPGDTVVVPADGYYQVRALAREYLAPLGVTV  117 (366)
T ss_pred             eECCCCccHHHHHHHHHHHc--C-CCEEEECCHHHHHHHHHHHhc----CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEE
Confidence            44445567889999999999  2 356777888889999998887    7999999999999888765543 34459999


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccc--cCccccccCcccccE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA--VGKIDINIQNYKVDL  191 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~--~~~~~~~~~~~~~d~  191 (397)
                      +.++.++.+    +    .+.+++++|++++++||+|.+.|+++|+++|+++|+++++|++|+  .+..+++   +++|+
T Consensus       118 ~~v~~~~~~----~----~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~---~g~Di  186 (366)
T PRK07582        118 REAPTAGMA----E----AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLE---LGADL  186 (366)
T ss_pred             EEECCCChH----H----HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchh---cCCcE
Confidence            999876322    1    334689999999999999999999999999999999999999985  3333433   47899


Q ss_pred             EEecccc-ccCCCC--ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K-~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      ++.|++| +.|+.|  +|+++.++ +....+.....       .....++....+.+...++    .++.+.++..+++.
T Consensus       187 vv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~-------~~g~~~~~~~a~l~~r~l~----tl~~R~~~~~~na~  255 (366)
T PRK07582        187 VVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRL-------LAGAIPGPFEAWLAHRSLG----TLGLRFARQCANAL  255 (366)
T ss_pred             EEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHH-------HhCCCCCHHHHHHHHhccc----cHHHHHHHHHHHHH
Confidence            9999999 666666  58877753 33232322111       1112233333232223333    24556678888999


Q ss_pred             HHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCChHHHHHHhC--Cc---EecccCccCCCCCCh
Q psy8850         268 RLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIEGESLLMAIK--DI---AVSSGSACTSASLEP  328 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~--~i---~~~~g~~~~~~~~~~  328 (397)
                      .+.+.|++ .|.+..+.-|.              ...++++.|.++  +..+..+.+.  ++   ...-|...+..  . 
T Consensus       256 ~la~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--~~~~~~~~~~~l~~~~~~~s~G~~~sl~--~-  329 (366)
T PRK07582        256 AVAELLAG-HPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--DAAAAERFVAASRLVVAATSFGGVHTSA--D-  329 (366)
T ss_pred             HHHHHHHh-CCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--CHHHHHHHHHhCCcceecccCCCccchh--h-
Confidence            99999988 77764332111              125778888886  3444444443  22   22333322210  0 


Q ss_pred             hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         329 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       329 ~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                        .....+.  ...++.||+|++....++.++.+.++|.
T Consensus       330 --~~~~~~~--~~~~~liR~svGlE~~~dli~dl~~al~  364 (366)
T PRK07582        330 --RRARWGD--AVPEGFVRLSCGIEDTDDLVADLERALD  364 (366)
T ss_pred             --hHHHcCC--CCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence              0111221  1224899999998665555555555554

>PLN02368 alanine transaminase

Probab=99.93  E-value=1e-23  Score=197.44  Aligned_cols=230  Identities=16%  Similarity=0.137  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEE
Q psy8850          42 AIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY  115 (397)
Q Consensus        42 ~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~  115 (397)
                      ...++|+++++++    |  +++++|++|+|+++|+.+++.++..   ++||+|++++|+|+.+...+...   |.+++.
T Consensus       108 G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~---~pGd~Vli~~P~Y~~y~~~~~~~---g~~~v~  181 (407)
T PLN02368        108 GLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR---GEKDGVLVPVPQYPLYSATISLL---GGTLVP  181 (407)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC---CCCCEEEEeCCCCccHHHHHHHc---CCEEEE
Confidence            4455666666665    6  4677999999999999999988762   48999999999999999888877   899999


Q ss_pred             eccCC--CCCCCHHHHHHHhcC------CceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc----
Q psy8850         116 LKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI----  180 (397)
Q Consensus       116 v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~----  180 (397)
                      ++++.  ++.+|++++++++++      +++++++++|+||||.+++   +++|+++|++||++||+|++|.....    
T Consensus       182 v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~  261 (407)
T PLN02368        182 YYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDER  261 (407)
T ss_pred             EecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence            99874  367999999999874      6899999999999999999   46788889999999999999873211    


Q ss_pred             c-cccC-----------cccccEEEecccccc-CCCC--ceEEEE---ecCCCCccccccccCCccccccCCCCchhHHH
Q psy8850         181 D-INIQ-----------NYKVDLMSFSAHKIY-GPKG--IGALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV  242 (397)
Q Consensus       181 ~-~~~~-----------~~~~d~~~~s~~K~~-g~~g--~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (397)
                      + ..+.           .....+++.|++|.+ |.+|  +|++++   +++....+.... .      ... ..+.....
T Consensus       262 ~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-~------~~~-~~~~~~Q~  333 (407)
T PLN02368        262 PFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-S------IAL-SPNVSGQI  333 (407)
T ss_pred             CcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-c------ccC-CCCcHHHH
Confidence            1 1110           112457889999954 5555  788875   443433333321 0      111 23444444


Q ss_pred             HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC
Q psy8850         243 GMGEAFRL----------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM  286 (397)
Q Consensus       243 ~l~~al~~----------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  286 (397)
                      ++.++++.          ..++..++.+.++++++.+.+.|.+ ++++.+..++
T Consensus       334 aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~-~~g~~~~~P~  386 (407)
T PLN02368        334 FMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNS-CKNVVCNFTE  386 (407)
T ss_pred             HHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEeCCCC
Confidence            45556642          1223456788999999999999999 8888776543

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.93  E-value=7.5e-23  Score=174.62  Aligned_cols=342  Identities=16%  Similarity=0.168  Sum_probs=249.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcch-hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||.+|.+..|..+.+..++.....++...-..+.- ......+-..+-.+++-+.|+.+.+++++++.+--+..++.+..
T Consensus        35 LdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aal  114 (407)
T COG3844          35 LDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAAL  114 (407)
T ss_pred             eeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHh
Confidence            45667776664444444444333232221101211 22233456668999999999998999999999887777776665


Q ss_pred             hhhccCCCEEEEcCC-CChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQT-EHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~-~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      +.  .+|+.||+++. .+++-...++-+.    ++..+..+-.+.+.+.++++++++++.+|+++++++-||...++..|
T Consensus       115 r~--~~~r~vIv~E~~~fpTdly~a~g~~----~~~~~~~~~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~ai  188 (407)
T COG3844         115 RP--QEGRRVIVSEGDNFPTDLYIAEGLA----DLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAI  188 (407)
T ss_pred             cc--CCCceEEeecCCCCCcchhhhcchh----hhhcccccceeeeChHHHHHhhccceEEEEeccccccccceeeHHHH
Confidence            43  34677777665 4455554444332    22222344456678889999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-c-cCCCCceEEEEecCCCCccccccccCCc---------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-I-YGPKGIGALYIRRNPRTRIEAQIHGGGH---------  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~---------  227 (397)
                      -+++|++|+++++|-+|+.|.++.++...++|+-+++.+| + .||.+.+++++.++..+...+...||..         
T Consensus       189 T~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~  268 (407)
T COG3844         189 TALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEE  268 (407)
T ss_pred             HHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhh
Confidence            9999999999999999999999999999999999999999 4 5566689999988877766655555421         


Q ss_pred             -------cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcC--cEEEeCCCCC-CCCceEEE
Q psy8850         228 -------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIE--EIYINGDMNN-RIPHNLNI  296 (397)
Q Consensus       228 -------~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~-~~~~~~~~  296 (397)
                             ..+|..|+++.....++..+|+...+ .+.+++++-..+.+++.+.++..-+  ++.+..+... ..+.-+.+
T Consensus       269 ~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~  348 (407)
T COG3844         269 VYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSL  348 (407)
T ss_pred             ccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeE
Confidence                   24677889999999999999998765 5899999999999999998887334  5667766432 33444444


Q ss_pred             EecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCCHHHHHHHHHHHHHHHHHH
Q psy8850         297 SFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       297 ~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..+  ...++.+.|.  ||..-                       ...++.+|+.++ .|++-+||=.+++.|.++++..
T Consensus       349 ~hp--~~~~V~qaLi~rGVigD-----------------------~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         349 YHP--HGYQVMQALIDRGVIGD-----------------------FREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             ecC--cHHHHHHHHHHcCcccc-----------------------ccCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence            444  5677877775  54332                       123489999987 5689999999999999998764

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.92  E-value=1.3e-22  Score=176.54  Aligned_cols=316  Identities=17%  Similarity=0.155  Sum_probs=213.1

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g  110 (397)
                      .+.+.+...+....++++|+.+=|--  .-+.+.||+.|+..++..+.    ++||+|+.+..-|.++...+... .+.|
T Consensus        53 G~iYsRi~NPT~~vlE~RiAaLEGG~--aa~a~aSG~AA~~~ai~~la----~aGD~iVss~~LYGGT~~lf~~tl~~~G  126 (426)
T COG2873          53 GNIYTRIMNPTTDVLEERIAALEGGV--AALAVASGQAAITYAILNLA----GAGDNIVSSSKLYGGTYNLFSHTLKRLG  126 (426)
T ss_pred             CceeeeccCchHHHHHHHHHHhhcch--hhhhhccchHHHHHHHHHhc----cCCCeeEeeccccCchHHHHHHHHHhcC
Confidence            34445566677888999999887643  35667889999999999998    89999999999999999998876 5669


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      +++++++.+     |++.++++|+++||+|+++...||.+.+.|++.|+++||++|+++|||.+.+.+.+ +...+.++|
T Consensus       127 i~v~fvd~~-----d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-~rP~~hGAD  200 (426)
T COG2873         127 IEVRFVDPD-----DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-CRPIEHGAD  200 (426)
T ss_pred             cEEEEeCCC-----CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee-cchhhcCCC
Confidence            999999876     79999999999999999999999999999999999999999999999999886633 223344899


Q ss_pred             EEEeccccccCCCC--ceEEEEecCCCC-----ccc------cccccCCccccc----------------cCCCCchhHH
Q psy8850         191 LMSFSAHKIYGPKG--IGALYIRRNPRT-----RIE------AQIHGGGHEYGL----------------RSGTLATHQI  241 (397)
Q Consensus       191 ~~~~s~~K~~g~~g--~g~~~~~~~~~~-----~~~------~~~~~~~~~~~~----------------~~~~~~~~~~  241 (397)
                      +++.|.+|+.|+.|  +|-+++......     +++      +.++|-.....|                ...+.+....
T Consensus       201 IVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnA  280 (426)
T COG2873         201 IVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNA  280 (426)
T ss_pred             EEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHH
Confidence            99999999766555  455555422111     111      111111000000                0011111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCCC--hH
Q psy8850         242 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFIE--GE  304 (397)
Q Consensus       242 ~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~  304 (397)
                      +.+...+|    .+.-++++..+++..+.+.|++ .|.+.++.-++               ...+.++.|.+++..  ..
T Consensus       281 fl~lqGlE----TL~LRmerH~~NA~~vA~~L~~-HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~  355 (426)
T COG2873         281 FLLLQGLE----TLSLRMERHCENALKVAEFLEN-HPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGK  355 (426)
T ss_pred             HHHHhchh----hhHHHHHHHHHhHHHHHHHHhc-CCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChHHHHH
Confidence            11111222    2445678889999999999998 78776664321               133456777776531  24


Q ss_pred             HHHHHhC------CcEecccCccCCCCCCh----hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK------DIAVSSGSACTSASLEP----SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       305 ~~~~~l~------~i~~~~g~~~~~~~~~~----~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ++.+.|+      +|-=......-|.+..+    ..-....|+.+    ..||+|++.    |+++.++..|+++++.
T Consensus       356 ~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~----~~IRlSVGI----Ed~~DiiaDl~qAl~~  425 (426)
T COG2873         356 KFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTP----DLIRLSVGI----EDIDDIIADLEQALEA  425 (426)
T ss_pred             HHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCC----CcEEEEecc----CCHHHHHHHHHHHHhc
Confidence            4444443      32222222222222222    23456666665    899999995    7888888888877653

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.92  E-value=3.9e-23  Score=193.22  Aligned_cols=313  Identities=18%  Similarity=0.150  Sum_probs=213.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK  119 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~  119 (397)
                      .....++++.++++++.+  ++++|+||++|+.+++.+++    ++||+| ++++.|.++...+...   |.+++.++++
T Consensus        52 ~~g~~~Leeaia~~~g~~--~vv~t~~Gt~Al~la~~al~----~pGD~V-~~~~~f~~~~~~i~~~---Ga~pv~v~i~  121 (431)
T cd00617          52 SKSFYDLEDAVQDLFGFK--HIIPTHQGRGAENILFSILL----KPGRTV-PSNMHFDTTRGHIEAN---GAVPVDLVID  121 (431)
T ss_pred             CCCHHHHHHHHHHHHCCC--eEEEcCCHHHHHHHHHHHhC----CCCCEE-ccCCcccchHHHHHhC---CCEeEEEecc
Confidence            335789999999999986  79999999999999999887    899987 5888888888877777   9999999886


Q ss_pred             C----------CCCCCHHHHHHHhcCC----ceEEEEecccCcc-cccccH---HHHHHHHHhcCcEEEEecccccCc--
Q psy8850         120 N----------NGLITLSQLEEKICSD----TILVSVMLVNNEI-GVIQPI---LEIGELCRSKGVIFHCDAAQAVGK--  179 (397)
Q Consensus       120 ~----------~~~~d~~~l~~~i~~~----~~~v~~~~~~~~t-G~~~~l---~~i~~l~~~~gi~livD~a~~~~~--  179 (397)
                      .          .|.+|+++|+++++++    +++|+++.++||+ |..+++   ++|.++|++||++||.|+++..+.  
T Consensus       122 ~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~  201 (431)
T cd00617         122 EAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAY  201 (431)
T ss_pred             cccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhh
Confidence            2          3559999999999865    7899999999998 888874   578999999999999999976431  


Q ss_pred             ---------cccccC------cccccEEEecccc-ccCCCCceEEEEecC-CCCccccccccCCccccccCCCCchhHHH
Q psy8850         180 ---------IDINIQ------NYKVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIV  242 (397)
Q Consensus       180 ---------~~~~~~------~~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (397)
                               ....+.      ....|.+++|++| ..++.| |+++.+++ +..+++.....  .......|..+...+.
T Consensus       202 ~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~~~~~~~~~--~~~~~~~gG~~~r~~~  278 (431)
T cd00617         202 FIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYEEARQRVVL--YEGFVTYGGMAGRDME  278 (431)
T ss_pred             hhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHHHHHHhccc--cCCccccccccHHHHH
Confidence                     111111      1147899999999 666664 88888864 55554432110  1111234555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---------CChHHHHHHhC--
Q psy8850         243 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---------IEGESLLMAIK--  311 (397)
Q Consensus       243 ~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~--  311 (397)
                      ++..+++...+  ....++..+++++|.+.|.+  .|+.+..+.+   .+.+.+..+.         .++.++...|.  
T Consensus       279 A~A~gL~e~~~--~~~l~~~~~~r~~l~~~L~~--~G~~v~~P~G---gh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e  351 (431)
T cd00617         279 ALAQGLREAVE--EDYLRHRVEQVRYLGDRLDE--AGVPIVEPAG---GHAVFIDAREFLPHIPQEQFPAQALAAELYLE  351 (431)
T ss_pred             HHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH--CCCCccCCCc---ceEEEEEhHHhcCCCCcccCcHHHHHHHHHHH
Confidence            66556654322  12333334456899999998  4777776544   4555555442         13566665554  


Q ss_pred             -CcEec-ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC-CCCHHHHHHHHHHHHHHHHHHHhcCccc
Q psy8850         312 -DIAVS-SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMKVKKLRELSPLW  380 (397)
Q Consensus       312 -~i~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~-~~~~~~i~~~~~~l~~~~~~~~~~~~~~  380 (397)
                       ||... .|....+...+....       ....-..+|+.++- .-|.+++|.++++|..+.++-.... ++
T Consensus       352 ~gV~~~~~g~~~~~~~~~~~~~-------~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~~~-~~  415 (431)
T cd00617         352 AGVRAVELGIFSAGRDPNTGEN-------KYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERREDIR-GL  415 (431)
T ss_pred             cCeeEEeecceecccCCCCCcc-------cCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHhhCC-Ce
Confidence             67643 344322210000000       00012789999873 4689999999999999888754433 54

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.92  E-value=6.9e-23  Score=186.18  Aligned_cols=311  Identities=16%  Similarity=0.155  Sum_probs=220.9

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g  110 (397)
                      .+.+++...+....+++.++++-|.+  ..+.++||..|+..++.++.    ++||+|++++..|+++...+... .+.|
T Consensus        54 ~~~Y~R~~nPT~~~lE~~~a~LEg~~--~~~afsSGmaAI~~~~l~ll----~~GD~vl~~~~~YG~t~~~~~~~l~~~g  127 (396)
T COG0626          54 GYDYSRTGNPTRDALEEALAELEGGE--DAFAFSSGMAAISTALLALL----KAGDHVLLPDDLYGGTYRLFEKILQKFG  127 (396)
T ss_pred             CcccccCCCccHHHHHHHHHHhhCCC--cEEEecCcHHHHHHHHHHhc----CCCCEEEecCCccchHHHHHHHHHHhcC
Confidence            45555666678889999999998876  68888899999999999888    78999999999999999988876 4559


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV  189 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~  189 (397)
                      +++++++..     +.+++++++. ++|++|+++.|+||+..+.|+++|+++||++|+.+++|++.+.+... +...+++
T Consensus       128 i~~~~~d~~-----~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q-~PL~~Ga  201 (396)
T COG0626         128 VEVTFVDPG-----DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQ-RPLELGA  201 (396)
T ss_pred             eEEEEECCC-----ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccccc-ChhhcCC
Confidence            999888755     5667777777 59999999999999999999999999999999999999998876653 2234489


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCCccc-cccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIE-AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL  265 (397)
Q Consensus       190 d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~  265 (397)
                      |+++.|.+|..++.+   .|+++.+++...... .....      ...+.+.....+-+...++.    +.-+.++..++
T Consensus       202 DIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~------~~G~~l~p~dA~l~lRGlkT----L~~Rm~~~~~n  271 (396)
T COG0626         202 DIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRA------NTGAVLSPFDAWLLLRGLRT----LALRMERHNEN  271 (396)
T ss_pred             CEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHh------hcCCCCCHHHHHHHHhccch----HHHHHHHHHHH
Confidence            999999999554433   465555544322221 11100      01122332333333233332    44567777888


Q ss_pred             HHHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecC-CChHHHHHHhC--CcEecccCccCCCC---
Q psy8850         266 QKRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNF-IEGESLLMAIK--DIAVSSGSACTSAS---  325 (397)
Q Consensus       266 ~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~---  325 (397)
                      +..+.+.|++ .|.+.-+.-|+              ...++++.|.+.+ ....++.+.|+  .+..+.|...+...   
T Consensus       272 A~~IA~~L~~-~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l~~~a~SlGgveSLi~~pa  350 (396)
T COG0626         272 ALKIAEFLAD-HPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLFKLAESLGGVESLISHPA  350 (396)
T ss_pred             HHHHHHHHhc-CCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCccEEeccCCCccccccccc
Confidence            8888888888 77765432222              1257888888886 44566777776  55666666554422   


Q ss_pred             -CC----hhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         326 -LE----PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       326 -~~----~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                       +.    +.......|+.+    +.||+|++.    |+++.+++.|+++++.+
T Consensus       351 ~~th~~~~~~~r~~~Gi~~----~LvRlSVGl----Ed~eDLi~Dl~~Al~~~  395 (396)
T COG0626         351 TMTHASIPLEERAKAGITD----GLVRLSVGL----EDVEDLIADLEQALAKA  395 (396)
T ss_pred             ccCcccCCHhHHHhcCCCC----CeEEEEecC----CCHHHHHHHHHHHHHhh
Confidence             21    223445677775    999999997    77888888888877654

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=169.29  Aligned_cols=336  Identities=15%  Similarity=0.171  Sum_probs=234.8

Q ss_pred             CCCHHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      -.+++.++++-++.+.+. .+-.. .-.......+.+.++.+.+++++|.+  .+.+|+|+-+|=.+++.+++    ++|
T Consensus        28 iLt~eArkal~E~gDGYSvCD~C~-~Grldei~kPpI~~F~~dlaeFlg~D--~~R~t~GARe~KfavMhal~----~~g  100 (382)
T COG1103          28 ILTEEARKALLEWGDGYSVCDFCL-EGRLDEITKPPIKDFLEDLAEFLGMD--EVRVTAGAREAKFAVMHALC----KEG  100 (382)
T ss_pred             cCCHHHHHHHHHhcCCcchhhhhc-cCccccccCCcHHHHHHHHHHHhCCc--eeeecccchhhHHHHHHHhc----cCC
Confidence            457888888888765422 11110 01111122345666667799999988  69999999999999999999    899


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcC-------CceEEEEecccCcccccccHHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS-------DTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~-------~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                      |-|++...+|.+++-+++..   |.++..||..  ++..++++...+.|++       .+.+.+++++...-|.+.|.+.
T Consensus       101 d~vV~D~~aHYttyvAAEra---gl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakk  177 (382)
T COG1103         101 DWVVVDSLAHYTTYVAAERA---GLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKK  177 (382)
T ss_pred             CEEEEcCcchHHHHHHHHhc---CCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHH
Confidence            99999999999999888877   9999999965  4677889888877742       3678899999999999999999


Q ss_pred             HHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc---cccccC
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH---EYGLRS  233 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~  233 (397)
                      ++++|++||+++++.++|..|.+|.+....++||+++|.|| +....++|++.++.++.+..-... +...   .--...
T Consensus       178 va~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~S-g~~~~~KEvellG  256 (382)
T COG1103         178 VAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRS-GRAFPKKEVELLG  256 (382)
T ss_pred             HHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhc-ccccccceeeeec
Confidence            99999999999999999999999999999999999999999 655555899999876554432211 0000   000112


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--
Q psy8850         234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--  311 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  311 (397)
                      ++.--..+..+.+++-...+.+.++-+.+. .+.++.+.|++ +.|+.-.+..+.. ..++.|..+..  .++.+.-.  
T Consensus       257 CT~rGapivTlmASfP~V~eRVkrWdeEv~-kaR~fv~elEk-igg~~qlG~rPk~-HdLm~Fetp~f--~eIakk~~r~  331 (382)
T COG1103         257 CTVRGAPIVTLMASFPHVVERVKRWDEEVE-KARWFVAELEK-IGGVKQLGERPKN-HDLMKFETPVF--HEIAKKHKRK  331 (382)
T ss_pred             ccccCchHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHH-hhhHHHhCCCCcc-cceeeecCchH--HHHHHhCcCC
Confidence            333334566666777776665555555444 47788888988 8777666654322 34555554432  22222222  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCcccc--CceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELA--HSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.++-             .-|+..|+..-..  ..++.+|+.. .+.|+++..+++++++++++
T Consensus       332 gyFlY-------------~ELK~RgI~GI~~G~Tk~~K~svyG-l~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         332 GYFLY-------------EELKKRGIHGIQPGQTKYFKLSVYG-LSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             ceeeH-------------HHHHhcCccccccCceeEEEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence            22221             1122222221111  2578888875 68999999999999998865

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.92  E-value=1.8e-22  Score=188.67  Aligned_cols=332  Identities=17%  Similarity=0.122  Sum_probs=213.6

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEE
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI   89 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~v   89 (397)
                      .++-++++.+.+..-        ...+  ..+...++++.++++++.+  ++++++|+++|+.+++.++..   ++||+|
T Consensus        10 ~~~~~~~~~~~l~~~--------~~~g--~~~~~~~~e~~la~~~g~~--~~v~~~sgt~al~~~l~~~~~---~~Gd~V   74 (375)
T PRK11706         10 VGTELDYIQQAMSSG--------KLCG--DGGFTRRCQQWLEQRFGSA--KVLLTPSCTAALEMAALLLDI---QPGDEV   74 (375)
T ss_pred             CHHHHHHHHHHHHcC--------CccC--CCHHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHhCC---CCCCEE
Confidence            455577777777541        1111  1235678888999999885  799999999999988776522   789999


Q ss_pred             EEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcE
Q psy8850          90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI  168 (397)
Q Consensus        90 l~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~  168 (397)
                      +++.++|+++..++...   |.+++.++++++ +.+|++++++++++++++|++++   ++|...++++|.++|++||++
T Consensus        75 iv~~~t~~~~~~~~~~~---G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~~la~~~~i~  148 (375)
T PRK11706         75 IMPSYTFVSTANAFVLR---GAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPVH---YAGVACEMDTIMALAKKHNLF  148 (375)
T ss_pred             EECCCCcHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHHHHHHHcCCE
Confidence            99999999998888776   999999999865 57899999999999999998764   589999999999999999999


Q ss_pred             EEEecccccCccccccCcc--cccEEEeccc--cccCCCCceEEEEe-cCCCCccccccccCCcc-c---------c-cc
Q psy8850         169 FHCDAAQAVGKIDINIQNY--KVDLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGHE-Y---------G-LR  232 (397)
Q Consensus       169 livD~a~~~~~~~~~~~~~--~~d~~~~s~~--K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~-~---------~-~~  232 (397)
                      ||+|++|+.+... +....  ..|+-++|+|  |.+++...|.++.+ ++...++......|... .         . ..
T Consensus       149 vIeD~a~a~g~~~-~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  227 (375)
T PRK11706        149 VVEDAAQGVMSTY-KGRALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVD  227 (375)
T ss_pred             EEEECcccccccc-CCeeeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeee
Confidence            9999999977631 21111  2477888887  85544323555554 33443333322211000 0         0 01


Q ss_pred             CCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCc---EEEeCCCCC--CCCceEEEEecC-CChHH
Q psy8850         233 SGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEE---IYINGDMNN--RIPHNLNISFNF-IEGES  305 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~--~~~~~~~~~~~~-~~~~~  305 (397)
                      .|......  .+.+++-.. .+.+++..++.+++.+++.+.|.+ +++   +.+...+..  ...+++.+.++. .+..+
T Consensus       228 ~g~~~~~~--~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  304 (375)
T PRK11706        228 IGSSYLPS--ELQAAYLWAQLEAADRINQRRLALWQRYYDALAP-LAEAGRIELPSIPDDCKHNAHMFYIKLRDLEDRSA  304 (375)
T ss_pred             cccccCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCeeecCCCCCCCceeeEEEEEEECCcCCHHH
Confidence            12211111  111122111 123566777777888888888877 652   332221111  123345555542 35678


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCC-------CccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGC-------NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~-------~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      +.+.|.  ||.....  +.|....  ..++..+.       ........+.+.+....+++|++++++.|++++
T Consensus       305 l~~~L~~~gI~~~~~--~~p~~~~--~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        305 LINFLKEAGIMAVFH--YIPLHSS--PAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             HHHHHHHCCCCcccc--CCccCcc--hhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence            888887  7766533  2232111  12222211       123345778888888889999999999999864

>KOG0256|consensus

Probab=99.92  E-value=3.2e-23  Score=182.00  Aligned_cols=294  Identities=17%  Similarity=0.219  Sum_probs=208.9

Q ss_pred             HHHHHHHHHHHHhC--------CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          42 AIEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        42 ~~~~~~~~la~~~~--------~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      ++..+++++++++.        .+|+++++++|+|.|+++++..|.    .||+..+++.|.|+++......  +.|.++
T Consensus       122 Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa----dpgdafLvPtPyY~gfdrdl~~--rTgvei  195 (471)
T KOG0256|consen  122 GLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA----DPGDAFLVPTPYYPGFDRDLRW--RTGVEI  195 (471)
T ss_pred             CchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc----CCCceeeecCCCCCccccccee--ccCceE
Confidence            56677788877764        578899999999999999999888    8999999999999999766543  238999


Q ss_pred             EEeccCC--CCCCCHHHHHHHhcC------CceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcccc
Q psy8850         114 TYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDI  182 (397)
Q Consensus       114 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~~  182 (397)
                      +.|.+.+  ++.++.+++|+++.+      +.+.+++++|+||.|.+.+   +..+..+|.+++|.||+|++|+.....-
T Consensus       196 vpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~  275 (471)
T KOG0256|consen  196 VPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDK  275 (471)
T ss_pred             EEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCc
Confidence            9998873  568999999998853      5789999999999999998   4567778899999999999998433210


Q ss_pred             -----------ccC-cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchh---HHHHHH
Q psy8850         183 -----------NIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH---QIVGMG  245 (397)
Q Consensus       183 -----------~~~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~  245 (397)
                                 +.. ..+..-+++|.+|-+|.+|  .|+++..++........+..        .+..+..   .++.+.
T Consensus       276 ~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmss--------f~~vSs~tQ~~la~LL  347 (471)
T KOG0256|consen  276 SEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSS--------FGLVSSQTQYLLASLL  347 (471)
T ss_pred             cCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhh--------ccCCcHHHHHHHHHHh
Confidence                       111 2234467899999777667  67777765433222222211        1112222   222232


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CC------hHHHHHHhC---CcEe
Q psy8850         246 EAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IE------GESLLMAIK---DIAV  315 (397)
Q Consensus       246 ~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~l~---~i~~  315 (397)
                      .--++....+++..++++...+++.++|++  .|+.+.....   +.+.++.+.. .+      ..++.+.+.   ++.+
T Consensus       348 SD~~f~~~yl~en~~Rl~~rh~~~~~gLk~--lgI~cl~s~A---GlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnl  422 (471)
T KOG0256|consen  348 SDEEFTREYLRENNKRLRIRHRYIVEGLKA--LGIPCLKSNA---GLFCWVDLRKLLTSLTFEGELELWERILDNVKLNL  422 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHh--cCCceeecCC---eeEEEEEhHHhcCcCChHHHHHHHHHHHHhhcccc
Confidence            222333446888899999999999999999  6888776543   4555666642 11      123334433   7888


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +||..|.=.                 -++|+|+|+.. +.++.++-++++|+..+..
T Consensus       423 SpG~s~~C~-----------------EpGWFRvcFAn-~~~~t~~~am~Ri~~~~~~  461 (471)
T KOG0256|consen  423 SPGSSCHCH-----------------EPGWFRVCFAN-MSEETLEVAMRRLKQFLDS  461 (471)
T ss_pred             CCCCcceec-----------------CCCeEEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence            999766321                 13999999997 5677777799999998873

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.92  E-value=1.8e-22  Score=189.75  Aligned_cols=314  Identities=16%  Similarity=0.140  Sum_probs=207.3

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc--
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK--   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~--   84 (397)
                      ++.++.+.+++.+++.... ...+ .     ...+...++++.++++++.+  ++++++||++|+..++..+.....+  
T Consensus        42 G~~~p~v~~a~~~~~~~~~-~~~~-~-----~~~~~~~~l~~~la~~~g~~--~~~~~~sg~~a~~~a~~~~~~~~~~~~  112 (379)
T TIGR00707        42 GHAHPKLVEALKEQLEKLV-HVSN-L-----YYTEPQEELAEKLVEHSGAD--RVFFCNSGAEANEAALKLARKYTGDKG  112 (379)
T ss_pred             CCCCHHHHHHHHHHHhhcc-cccc-c-----cCCHHHHHHHHHHHhhCCCC--EEEEeCCcHHHHHHHHHHHHHHhhccC
Confidence            3556899999999887632 1111 1     12356788999999999876  8999999999999999865322111  


Q ss_pred             -CCCEEEEcCCCChhhHHHHHHHhhCCcEE----EEeccCCCCC----CCHHHHHHHhcCCceEEEEecccCcccccc-c
Q psy8850          85 -RGKHIITVQTEHKSVLDSIRKLENDGFRV----TYLKPKNNGL----ITLSQLEEKICSDTILVSVMLVNNEIGVIQ-P  154 (397)
Q Consensus        85 -~g~~vl~~~~~~~s~~~~~~~~~~~g~~v----~~v~~~~~~~----~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~-~  154 (397)
                       ++++|++.+++|+.+.......   +...    ...+...+..    .|++++++.+++++++|+++++++++|... +
T Consensus       113 ~~~~~vi~~~~~yh~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~  189 (379)
T TIGR00707       113 KEKKKIIAFENSFHGRTMGALSA---TGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPAS  189 (379)
T ss_pred             CCCCeEEEECCCcCCccHHHHHh---cCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCC
Confidence             3689999999887766554443   2111    1122221111    289999999988999999988877788653 3


Q ss_pred             ---HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccccccC-CCCceEEEEecCCCCccccccccC
Q psy8850         155 ---ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       155 ---l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~  225 (397)
                         +++|.++|++||+++|+|++|+ ++..    +.+......|+++  ++|.++ +.++|+++++++....+.....+ 
T Consensus       190 ~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~riG~~~~~~~~~~~~~~~~~~-  266 (379)
T TIGR00707       190 AEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIIT--LAKGLGGGVPIGATLAKEEVAEAFTPGDHG-  266 (379)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEE--EcccccCCcccEEEEEcHHHHhhhcCCCCC-
Confidence               7899999999999999999987 3221    1112223456664  569444 33589999987665555432211 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHH
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGES  305 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (397)
                           ... +.+...+.+..++++.+..  .++.+++.++++++++.|++......+  ......+.++.+.++. +..+
T Consensus       267 -----~~~-~~~~~~~~aa~aaL~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~g~~~~~~~~~-~~~~  335 (379)
T TIGR00707       267 -----STF-GGNPLACAAALAVLEVIEK--ERLLENVKEKGDYFKERLEELGKNYPN--KEVRGKGLMLGIELEA-PCKD  335 (379)
T ss_pred             -----CCC-CCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhhCCC--CccccCceEEEEEecC-cHHH
Confidence                 111 2355566666678876643  356677788888888887762111111  1111124456666653 3567


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +.+.|.  ||.+.++.                       .+++|++++...+++++++++++|+++
T Consensus       336 ~~~~l~~~Gv~v~~~~-----------------------~~~lRi~~~~~~t~~~i~~~~~~l~~~  378 (379)
T TIGR00707       336 IVKKALEKGLLVNCAG-----------------------PKVLRFLPPLIITKEEIDEAVSALEEA  378 (379)
T ss_pred             HHHHHHHCCcEEeeCC-----------------------CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence            777775  88887631                       278999998878999999999999875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.92  E-value=2.3e-23  Score=182.31  Aligned_cols=312  Identities=17%  Similarity=0.218  Sum_probs=210.7

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +-+.|+++++|.+.-..         ....|...+....+++.++++++.  +.++|++|||+|+.+++.+.+    +|+
T Consensus        10 ~g~~~~m~eam~~a~~~---------~~~~YG~D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~----~~~   74 (342)
T COG2008          10 AGPTPEMREALAAANAV---------GDDVYGEDPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHC----QPG   74 (342)
T ss_pred             CCCCHHHHHHHHhcccc---------CCCCCCCCHHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhc----CCC
Confidence            35678899998876531         112344566889999999999998  589999999999999999998    899


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccH---HH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPI---LE  157 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l---~~  157 (397)
                      ..|++....|-.....-..-.-.+.....+....+|.++++++++.+..      .+.+++..+.+|..|+++|+   ++
T Consensus        75 ~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~  154 (342)
T COG2008          75 ESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEA  154 (342)
T ss_pred             CeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHH
Confidence            9999999988777665433222234444444457899999999998863      24566677777788999995   56


Q ss_pred             HHHHHHhcCcEEEEeccccc---CccccccCcc--cccEEEeccccccCCCCceEEEEecCCCCcccc--ccccCCcccc
Q psy8850         158 IGELCRSKGVIFHCDAAQAV---GKIDINIQNY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA--QIHGGGHEYG  230 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~---~~~~~~~~~~--~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~--~~~~~~~~~~  230 (397)
                      |.++||++|++|++|++--+   -....+...+  ++|+++++++|.++.++.++++.+.+..+++..  ...|+     
T Consensus       155 i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~Gg-----  229 (342)
T COG2008         155 ISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGG-----  229 (342)
T ss_pred             HHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhcc-----
Confidence            78889999999999988421   1111222222  799999999995554445888888776665432  22221     


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMA  309 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (397)
                          ...-..+++. +.+-.+.+. ......+-.+++.+|.+.+.+ .+|+.+..++.   .+++.+.++.   ..+ ..
T Consensus       230 ----l~~k~r~laA-~~~~~l~~~~~~~~~~Han~mA~~La~~~~~-~~G~~~~~~~~---tN~vf~~l~~---~~i-~~  296 (342)
T COG2008         230 ----LMRKARFLAA-QGLYALEDDVWRLAADHANAMAARLAEGLEA-KPGVKLAFPVE---TNMVFVRLPE---SAI-EA  296 (342)
T ss_pred             ----cHhhhhHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHhhhh-cCCceeccCCc---ccEEEEECCh---HHH-HH
Confidence                2222333333 233333333 344456666779999999997 68998887633   4555555553   222 22


Q ss_pred             hC--CcEecccCccCCCCCChhhHHHhhCCCccccC-ceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         310 IK--DIAVSSGSACTSASLEPSYVLRALGCNDELAH-SSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       310 l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      +.  +.....|.....                   + ..+|+..+..+++++||++++.+++++
T Consensus       297 l~~~~~~~~~~~~~~~-------------------~~~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         297 LRLAGALFYRGVLIGA-------------------HGEIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             HHhhchhheeeeeccC-------------------CCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            22  332222211111                   1 368999999999999999999998764

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.92  E-value=2.4e-22  Score=189.43  Aligned_cols=312  Identities=17%  Similarity=0.205  Sum_probs=204.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|.|.+++.+++..... ..+   .   ...+...++.+.|+++.+.  +.+++++||++|++.+++.+..+..   
T Consensus        55 Gh~~p~v~~ai~~~~~~~~~-~~~---~---~~~~~~~~l~~~l~~~~~~--~~~~~~~SGseA~e~Alk~a~~~~~~~~  125 (396)
T PRK04073         55 GHRHPKIIQALKDQADKVTL-TSR---A---FHSDQLGPWYEKVAKLTGK--DMVLPMNTGAEAVETAIKAARRWAYDVK  125 (396)
T ss_pred             CCCCHHHHHHHHHHHhhccc-ccc---c---cCCHHHHHHHHHHHhcCCC--CeEEEcCChHHHHHHHHHHHHHHhhhcc
Confidence            45789999999999876321 111   0   1123456788888888764  4899999999999999997653211   


Q ss_pred             ---cCCCEEEEcCCCChhh-HHHHHHHhhCCc---------EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccc
Q psy8850          84 ---KRGKHIITVQTEHKSV-LDSIRKLENDGF---------RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG  150 (397)
Q Consensus        84 ---~~g~~vl~~~~~~~s~-~~~~~~~~~~g~---------~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG  150 (397)
                         ..+++|+....+|++. ..++......+.         .+..+|.+     |++++++++.+++++|++++++||+|
T Consensus       126 g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~~~~viiep~~~~~G  200 (396)
T PRK04073        126 GVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAITPNTAAFLVEPIQGEAG  200 (396)
T ss_pred             CCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHhcccCeEEEEEcCccCCCC
Confidence               1236677766655554 344333211010         12233332     78999999988999999999999999


Q ss_pred             cccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccccccCC--CCceEEEEecCCCCccc
Q psy8850         151 VIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGP--KGIGALYIRRNPRTRIE  219 (397)
Q Consensus       151 ~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~--~g~g~~~~~~~~~~~~~  219 (397)
                      .+.|    +++|.++|++||+++|+|++|+ +|..    ..+.....+|++++|  |.+|.  ..+|+++++++..+.+.
T Consensus       201 ~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~s--K~lg~gg~~ig~~~~~~~i~~~~~  278 (396)
T PRK04073        201 INIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILG--KALGGGVFPISCVAANRDILGVFT  278 (396)
T ss_pred             CccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEec--ccccCCCCcceEEEEcHHHHhhhc
Confidence            9887    7899999999999999999998 3321    123333457888765  94333  34799999876655543


Q ss_pred             cccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec
Q psy8850         220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN  299 (397)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (397)
                      ....      ....+. +....++..++|+.+.+  ..+.++..++++++.+.|++ +.. ....... ..+.++.+.++
T Consensus       279 ~~~~------~~t~~~-~~~~~aaa~aaL~~~~~--~~l~~~~~~~~~~l~~~L~~-l~~-~~i~~~~-~~g~~~~~~~~  346 (396)
T PRK04073        279 PGSH------GSTFGG-NPLACAVSIAALEVLEE--EKLPERSLELGEYFKEQLKE-IDN-PMIKEVR-GRGLFIGVELN  346 (396)
T ss_pred             CCCC------CCCCCC-CHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHh-hcC-Cccccee-cceEEEEEEec
Confidence            2211      122233 44455555578877654  34567778889999999987 521 1111111 11344555554


Q ss_pred             CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         300 FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       300 ~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                       .+..++...|.  ||.+.+.                       ..++|||+++..++++++++++++|++++
T Consensus       347 -~~~~~~~~~l~~~Gv~~~~~-----------------------~~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        347 -EPARPYCEALKEEGLLCKET-----------------------HETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             -chHHHHHHHHHHCCeEEecC-----------------------CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence             24556766665  7776531                       12789999998899999999999998865

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.92  E-value=2.7e-22  Score=188.56  Aligned_cols=321  Identities=17%  Similarity=0.206  Sum_probs=206.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++|.+.++.|+++++++.+++..+ .+... ....+ ........+++.+++++|++.  .++++|++.|+.+++.++  
T Consensus        85 ~tNlg~s~l~~~vieAv~~~~~~y-~~l~~-~l~~g-~~g~r~~~le~~lA~l~gae~--alvv~sg~aAi~l~l~~l--  157 (454)
T TIGR00474        85 HTNLGRAPLAEEAIEAVTDAARGY-SNLEY-DLETG-KRGSRYSHVEGLLCELTGAED--ALVVNNNAAAVLLALNTL--  157 (454)
T ss_pred             eccCCCCCCCHHHHHHHHHHHhcc-cchhc-ccccc-ccchHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHh--
Confidence            356778889999999999998863 23221 11111 122457889999999999973  556788888998888654  


Q ss_pred             hhccCCCEEEEcCCCChhh---HHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcc--c--ccc
Q psy8850          81 FYKKRGKHIITVQTEHKSV---LDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--G--VIQ  153 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~---~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t--G--~~~  153 (397)
                         .+|++|++++.+|..+   ......+...|++++.++.+  +..++++++++++++|++|++++++|++  |  ...
T Consensus       158 ---~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~  232 (454)
T TIGR00474       158 ---AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEV  232 (454)
T ss_pred             ---CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCC
Confidence               5899999999886432   22223344459999998765  3358999999999999999999999984  6  478


Q ss_pred             cHHHHHHHHHhcCcEEEEeccccc---------Ccccc--ccCcccccEEEeccccc-cCCCCceEEEEecCCCCccccc
Q psy8850         154 PILEIGELCRSKGVIFHCDAAQAV---------GKIDI--NIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQ  221 (397)
Q Consensus       154 ~l~~i~~l~~~~gi~livD~a~~~---------~~~~~--~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~  221 (397)
                      |+++|+++||+||+++++|.+.+.         +..+.  +....++|++++|++|+ +|| ..|+++++++.++.++..
T Consensus       233 dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~~G~i~g~~~~i~~l~~~  311 (454)
T TIGR00474       233 SIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-QAGIIVGKKELIERLKKN  311 (454)
T ss_pred             CHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-eEEEEEECHHHHHhhhhc
Confidence            999999999999999999986431         12221  33456899999999995 556 479999987665544321


Q ss_pred             cccCCccccccCCCCchhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhhc-CcE--EEeCCC
Q psy8850         222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARI------------EMKEELKRILFLQKRLYNGLMESI-EEI--YINGDM  286 (397)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~------------~~~~~~~~~~~~~~~l~~~l~~~~-~~~--~~~~~~  286 (397)
                      ...    ..++.   +-..++++.+++....+            -+....++..+++..+.+.|++.+ +++  .+....
T Consensus       312 ~l~----r~lr~---~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~  384 (454)
T TIGR00474       312 PLT----RALRV---DKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGL  384 (454)
T ss_pred             hhH----HHHhh---ChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcC
Confidence            110    11111   12233444444443321            122335566777888888887611 332  333332


Q ss_pred             ---------CCCCC-ceEEEEecCCChHHHHHHhC--C--cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC
Q psy8850         287 ---------NNRIP-HNLNISFNFIEGESLLMAIK--D--IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR  352 (397)
Q Consensus       287 ---------~~~~~-~~~~~~~~~~~~~~~~~~l~--~--i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~  352 (397)
                               ....+ ..+.+...+.+..++.+.|+  .  |..+.                        ..+.+.+-+-.
T Consensus       385 ~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r~------------------------~~~~~~ld~r~  440 (454)
T TIGR00474       385 SQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLRELPPPIIGRI------------------------EDDRFLLDLRT  440 (454)
T ss_pred             CcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCCCEEEEE------------------------ECCEEEEEeCc
Confidence                     11222 22233333456788888887  2  22221                        12555565553


Q ss_pred             CCCHHHHHHHHHHH
Q psy8850         353 FTTEKEIDFTIKLL  366 (397)
Q Consensus       353 ~~~~~~i~~~~~~l  366 (397)
                       ..++|++.+++.|
T Consensus       441 -~~~~~~~~~~~~~  453 (454)
T TIGR00474       441 -LLEDEEELLIEAL  453 (454)
T ss_pred             -CCHHHHHHHHHHh
Confidence             4678988888776

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK07505 hypothetical protein; Provisional

Probab=99.92  E-value=3.4e-22  Score=188.82  Aligned_cols=323  Identities=13%  Similarity=0.082  Sum_probs=197.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-c-cC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-K-KR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-~-~~   85 (397)
                      ..+|+|++++.+++... ++... .........+...++++.|+++++.   ..++.++|++|+..++..+.... + ++
T Consensus        60 ~~~p~v~~A~~~~l~~~-g~~~~-~~~~~~~~~~~~~~l~~~la~~~~~---~~~~~~sG~~a~~~ai~~~~~~~~~~~~  134 (402)
T PRK07505         60 DTHPAIIEGAVDALKRT-GSLHL-SSSRTRVRSQILKDLEEALSELFGA---SVLTFTSCSAAHLGILPLLASGHLTGGV  134 (402)
T ss_pred             CCCHHHHHHHHHHHHHh-CCCCC-CccchhhhhHHHHHHHHHHHHHhCC---CEEEECChHHHHHHHHHHHHhcccCCCC
Confidence            34899999999999763 22111 1111112456788999999999987   34555567789988887544211 1 23


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK  165 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~  165 (397)
                      ++.|+.....|++.... ......+.+++.+|.+     |++++++++.++++++++++|+||+|.+.|+++|.++|++|
T Consensus       135 ~~vi~~~~~~H~s~~~~-~~~~~~~~~v~~~~~~-----d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~  208 (402)
T PRK07505        135 PPHMVFDKNAHASLNIL-KGICADETEVETIDHN-----DLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQEKY  208 (402)
T ss_pred             CCEEEEchhhhHhHHhh-hhhhhcCCeEEEeCCC-----CHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHHHc
Confidence            33445555566654322 2222235677888764     89999999987888899999999999999999999999999


Q ss_pred             CcEEEEecccccCc---c----ccc-cC--cccccEEEeccccccCCCCceEEEE-ecCCCCccccccccCCccccccCC
Q psy8850         166 GVIFHCDAAQAVGK---I----DIN-IQ--NYKVDLMSFSAHKIYGPKGIGALYI-RRNPRTRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       166 gi~livD~a~~~~~---~----~~~-~~--~~~~d~~~~s~~K~~g~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
                      |+++|+|++|+.+.   .    ..+ ..  ..+..+++.|++|.+|+.| |++++ +++..+.+......    ..+ .+
T Consensus       209 ~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G-g~~~~~~~~~~~~~~~~~~~----~t~-~~  282 (402)
T PRK07505        209 GLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG-GVIMLGDAEQIELILRYAGP----LAF-SQ  282 (402)
T ss_pred             CCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC-eEEEeCCHHHHHHHHHhCCC----cee-CC
Confidence            99999999985321   1    111 11  1234577889999666544 77665 33333333322211    111 23


Q ss_pred             CCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC-
Q psy8850         235 TLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK-  311 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-  311 (397)
                      .++...+++..++++...+ .+.+..+++.++.+.+.+.+..  +      ..... ..+..+.++. ....++.+.|. 
T Consensus       283 ~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~------~~g~~-~~i~~~~~~~~~~~~~~~~~l~~  353 (402)
T PRK07505        283 SLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPT--E------QSGSF-LPIRLIYIGDEDTAIKAAKQLLD  353 (402)
T ss_pred             CCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHh--c------CCCCC-CCEEEEEeCCHHHHHHHHHHHHH
Confidence            4555667777677775432 3444444444444443332222  1      11111 1122223332 12456666665 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                       ||.+.+......                ....++|||+++..++++|+++++++|++++++
T Consensus       354 ~Gi~v~~~~~p~~----------------~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        354 RGFYTSPVFFPVV----------------AKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             CCCeEeeecCCCC----------------CCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence             888876522110                012368999999999999999999999988743

>PRK04311 selenocysteine synthase; Provisional

Probab=99.92  E-value=5.3e-22  Score=187.12  Aligned_cols=322  Identities=15%  Similarity=0.145  Sum_probs=212.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +|.+.++.++++.+++.+++..+. +... ....+ ........+++.+++++|++  ..++++|++.|+.+++.++   
T Consensus        91 tNlg~s~l~~~v~eav~~~~~~~~-~le~-~l~~g-~~g~r~~~~e~~lA~l~Gae--~a~vv~sgtaAl~l~l~~l---  162 (464)
T PRK04311         91 TNLGRALLSEAAIEAVTEAARGYS-NLEY-DLATG-KRGSRDRALAALLCALTGAE--DALVVNNNAAAVLLALNAL---  162 (464)
T ss_pred             ccCCCCCCCHHHHHHHHHHHhccc-cccc-chhhc-ccchHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHh---
Confidence            566778899999999999987632 2221 11111 11245678999999999987  5778888999999888764   


Q ss_pred             hccCCCEEEEcCCCChhhH---HHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCc--cc--cccc
Q psy8850          82 YKKRGKHIITVQTEHKSVL---DSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IG--VIQP  154 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~---~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~--tG--~~~~  154 (397)
                        .+|++|++++.+|..+.   .....+...|++++.++.+.  ..++++++++++++|++|++++++|+  +|  ...|
T Consensus       163 --~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~--~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~d  238 (464)
T PRK04311        163 --AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN--RTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVS  238 (464)
T ss_pred             --CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC--CCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCC
Confidence              58899999988766321   11223344599999997643  35799999999999999999999998  35  5679


Q ss_pred             HHHHHHHHHhcCcEEEEecccccC---------ccc--cccCcccccEEEeccccc-cCCCCceEEEEecCCCCcccccc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVG---------KID--INIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQI  222 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~---------~~~--~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~  222 (397)
                      +++|+++||+||+++++|++++.-         ..+  .+....++|++++|++|+ +|| ..|+++++++..+.++..-
T Consensus       239 l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~~li~~l~~~~  317 (464)
T PRK04311        239 LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGKKELIARLKKHP  317 (464)
T ss_pred             HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEcHHHHHHHhhch
Confidence            999999999999999999964311         111  122235899999999995 556 5799999987665543211


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHHHHH---------H---HHHHHHHHHHHHHHHHHHHhhhcC--c--EEEeCC-
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARI---------E---MKEELKRILFLQKRLYNGLMESIE--E--IYINGD-  285 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~---------~---~~~~~~~~~~~~~~l~~~l~~~~~--~--~~~~~~-  285 (397)
                      ..    ..+   ..+-..+.++.+++....+         .   +....++..++++.+.+.|+. ..  +  ..+... 
T Consensus       318 ~~----r~l---r~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~-~~~~~~~~~~~~~~  389 (464)
T PRK04311        318 LK----RAL---RVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKA-ALGAAFAVEVVPSF  389 (464)
T ss_pred             hH----HHH---hcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHh-ccCCCeeEEEEEcc
Confidence            10    111   1223445555555553321         1   223356777788888888877 32  2  234422 


Q ss_pred             --------CCCCCCceEEEEe--cCCChHHHHHHhCC----cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC
Q psy8850         286 --------MNNRIPHNLNISF--NFIEGESLLMAIKD----IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG  351 (397)
Q Consensus       286 --------~~~~~~~~~~~~~--~~~~~~~~~~~l~~----i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~  351 (397)
                              +....+ -+.+.+  ...+..++...|+.    |..+..                        .+.+.+-+-
T Consensus       390 ~~~gggs~p~~~~~-~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r~~------------------------~~~~~ld~r  444 (464)
T PRK04311        390 SQVGGGSLPVDRLP-SAAVTLTPKDRSLEALAARLRLLPPPVIGRIE------------------------DGRLLLDLR  444 (464)
T ss_pred             CccCCCCCcCCCCC-eEEEEEeCCCCCHHHHHHHHhcCCCCEEEEEE------------------------CCEEEEEeC
Confidence                    111112 223333  34567888888872    333211                        255666655


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy8850         352 RFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       352 ~~~~~~~i~~~~~~l~~~~  370 (397)
                      . ..++|++.++++|++++
T Consensus       445 ~-~~~~~~~~~~~~~~~~~  462 (464)
T PRK04311        445 T-LEEEDEERLAAALLEAL  462 (464)
T ss_pred             c-CCHHHHHHHHHHHHHHh
Confidence            4 57899999999998875

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.92  E-value=2.2e-22  Score=190.44  Aligned_cols=316  Identities=17%  Similarity=0.206  Sum_probs=206.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-c---
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-K---   83 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-~---   83 (397)
                      ..+|.|.+++.+.+.... ...+ .+     ..+...++++.++++++.+  .+++++||++|++.+++.+.... +   
T Consensus        47 h~~p~v~~a~~~~~~~~~-~~~~-~~-----~~~~~~~~~~~l~~~~~~~--~~~~~~SGs~A~e~al~~~~~~~~~~~~  117 (400)
T PTZ00125         47 HCHPKILAALINQAQKLT-LTSR-AF-----YNDVLGLAEKYITDLFGYD--KVLPMNSGAEAGETALKFARKWGYEVKG  117 (400)
T ss_pred             cCCHHHHHHHHHHHHhcc-cccc-cc-----cCHHHHHHHHHHHhCCCCC--EEEEeCCcHHHHHHHHHHHHHHHHhccC
Confidence            468999999999986522 1111 11     1346788899999888764  79999999999999999765321 1   


Q ss_pred             --cCCCEEEEcCCCChhhHHHHHHHhhC-Cc---------EEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCccc
Q psy8850          84 --KRGKHIITVQTEHKSVLDSIRKLEND-GF---------RVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIG  150 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~~~~~~~~~~-g~---------~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG  150 (397)
                        ..+++|++.+..|++........... ..         .+..++     ..|++++++.+. +++++|++++++|++|
T Consensus       118 ~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~le~~l~~~~~~~v~~ep~~~~~G  192 (400)
T PTZ00125        118 IPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVD-----YNDVEALEKLLQDPNVAAFIVEPIQGEAG  192 (400)
T ss_pred             CCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeC-----CCCHHHHHHHhCCCCeEEEEEcCccCCCC
Confidence              13467777777666655443322111 00         111222     238999999996 6799999999999999


Q ss_pred             cccc----HHHHHHHHHhcCcEEEEecccc-cCc----cccccCcccccEEEecccc-ccCCC-CceEEEEecCCCCccc
Q psy8850         151 VIQP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHK-IYGPK-GIGALYIRRNPRTRIE  219 (397)
Q Consensus       151 ~~~~----l~~i~~l~~~~gi~livD~a~~-~~~----~~~~~~~~~~d~~~~s~~K-~~g~~-g~g~~~~~~~~~~~~~  219 (397)
                      .+.|    +++|.++|++||+++|+|++|+ +|.    ...+.....+|++++|  | +.++. ++|+++++++..+.+.
T Consensus       193 ~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~~~~~~~~  270 (400)
T PTZ00125        193 VIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLANDDVMLVIK  270 (400)
T ss_pred             CccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcHHHHhhcc
Confidence            9998    8999999999999999999986 331    1222233457888765  9 54442 5899999877655544


Q ss_pred             cccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEE
Q psy8850         220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNI  296 (397)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~  296 (397)
                      ....+      ...+ .+.....+..++++.+.++  .+.++..++.+++++.|++.   .+.+.....    .+.++.+
T Consensus       271 ~~~~~------~t~~-~~~~~~~aa~~~l~~i~~~--~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~----~g~~~~v  337 (400)
T PTZ00125        271 PGEHG------STYG-GNPLACAVAVEALEVLKEE--KLAENAQRLGEVFRDGLKELLKKSPWVKEIRG----KGLLNAI  337 (400)
T ss_pred             CCCCC------CCCC-cCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhcCCCeEEEec----ccEEEEE
Confidence            32211      1122 2334455555677776542  34556666777777777661   122211211    1445556


Q ss_pred             EecC---CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         297 SFNF---IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       297 ~~~~---~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      .++.   ....++...|.  ||.+.++.                       .+.|||+++..++++++++++++|.+++.
T Consensus       338 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~lRi~~~~~~~~~~i~~~l~~l~~~l~  394 (400)
T PTZ00125        338 VFDHSDGVNAWDLCLKLKENGLLAKPTH-----------------------DNIIRFAPPLVITKEQLDQALEIIKKVLK  394 (400)
T ss_pred             EEccCcchHHHHHHHHHHHCCeEEeecC-----------------------CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence            6653   23455666664  77776531                       27899999888999999999999999988


Q ss_pred             HHHh
Q psy8850         372 KLRE  375 (397)
Q Consensus       372 ~~~~  375 (397)
                      ++.+
T Consensus       395 ~~~~  398 (400)
T PTZ00125        395 SFDS  398 (400)
T ss_pred             HHhc
Confidence            7643

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.92  E-value=7.3e-22  Score=182.51  Aligned_cols=259  Identities=18%  Similarity=0.230  Sum_probs=186.9

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCC-------CcEEEeCChhHHHHHHHHHhHhhhc----------cCCCEEEEcCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADP-------REIIWTSGATESNNLAIKGAAHFYK----------KRGKHIITVQT   94 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~i~~~~g~t~a~~~~l~~l~~~~~----------~~g~~vl~~~~   94 (397)
                      .+..++...+...++-+++++++|.+.       ...++|+|||+++..++.+...+..          .++..|++++.
T Consensus        70 ~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~  149 (373)
T PF00282_consen   70 TWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQ  149 (373)
T ss_dssp             STTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETT
T ss_pred             ccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccc
Confidence            344466777888899999999999882       2489999999999998877654321          12347899999


Q ss_pred             CChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC---C---ceEEEEecccCcccccccHHHHHHHHHhcCcE
Q psy8850          95 EHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---D---TILVSVMLVNNEIGVIQPILEIGELCRSKGVI  168 (397)
Q Consensus        95 ~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---~---~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~  168 (397)
                      .|+|..+++..+   |+.++.||+++++.+|+++|++++.+   +   +-+|+.+..++.+|.+.|+++|+++|++++++
T Consensus       150 aH~S~~Kaa~~l---Glg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~w  226 (373)
T PF00282_consen  150 AHYSIEKAARIL---GLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIW  226 (373)
T ss_dssp             S-THHHHHHHHT---TSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-E
T ss_pred             cccHHHHhccee---eeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhcccccee
Confidence            999999999998   99999999999999999999998854   2   44788999999999999999999999999999


Q ss_pred             EEEecccccCcc-cc-----ccCcccccEEEecccc-ccCCCCceEEEEecCCCC-c-c--c-cccccCC-------ccc
Q psy8850         169 FHCDAAQAVGKI-DI-----NIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT-R-I--E-AQIHGGG-------HEY  229 (397)
Q Consensus       169 livD~a~~~~~~-~~-----~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~-~-~--~-~~~~~~~-------~~~  229 (397)
                      +|||++++.... ..     ...--.+|+++.++|| ++.|.++|+++++++... . +  . .++....       ...
T Consensus       227 lHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~  306 (373)
T PF00282_consen  227 LHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYG  306 (373)
T ss_dssp             EEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEE
T ss_pred             eeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccc
Confidence            999999986332 11     1111268999999999 566889999999875321 1 1  1 1111000       000


Q ss_pred             ccc-CCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEe
Q psy8850         230 GLR-SGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF  298 (397)
Q Consensus       230 ~~~-~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  298 (397)
                      ... .++. -...+.++.+++.+ .+++.++.++..++++++.+.|++ .+.+.+..++.   ..+++|++
T Consensus       307 ~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~-~~~~el~~~~~---~~~vcFr~  372 (373)
T PF00282_consen  307 DYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRK-DPRFELVNEPD---LNIVCFRY  372 (373)
T ss_dssp             EGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEEESSTTS---SSEEEEEE
T ss_pred             cccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEcCCC---ceEEEEEe
Confidence            011 1122 34456666677644 678999999999999999999999 88899888655   45555554

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PLN02397 aspartate transaminase

Probab=99.91  E-value=1.4e-22  Score=192.01  Aligned_cols=311  Identities=15%  Similarity=0.122  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-CC-----CCcEEE--eCChhHHHH--HHHHHhHh
Q psy8850          11 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-AD-----PREIIW--TSGATESNN--LAIKGAAH   80 (397)
Q Consensus        11 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~-----~~~i~~--~~g~t~a~~--~~l~~l~~   80 (397)
                      +.+.+++.+...... ++   .....|....+..++|+++++++. ..     +++|..  +.+++.+..  ..+..+. 
T Consensus        65 p~~~~~~~~a~~~~~-~~---~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~-  139 (423)
T PLN02397         65 PVVLNVVRKAEQRLL-AG---SRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARF-  139 (423)
T ss_pred             cccchHHHHHHHHhh-cc---CCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHh-
Confidence            355566666543321 11   111123445577888898888763 21     123321  334444433  3333333 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-C-CCCCCCHHHHHHHhc---CCceEEEEecccCccccccc-
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-K-NNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP-  154 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~-~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~-  154 (397)
                         .+||+|++++|+|+.+...+...   |.+++.+|. + +++.+|++.+++.+.   ++++++++++||||||.+++ 
T Consensus       140 ---~pGd~Vlv~~P~y~~y~~~~~~~---g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~  213 (423)
T PLN02397        140 ---YPGSTIYIPNPTWGNHHNIFRDA---GVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTP  213 (423)
T ss_pred             ---CCCCEEEEeCCCchhHHHHHHHc---CCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCH
Confidence               58999999999999999888887   999999987 3 346789998888775   46789999999999999998 


Q ss_pred             --HHHHHHHHHhcCcEEEEecccccCcc--------cc-ccCcc-cccEEEeccccccCCCC--ceEEE--Ee-cCCCCc
Q psy8850         155 --ILEIGELCRSKGVIFHCDAAQAVGKI--------DI-NIQNY-KVDLMSFSAHKIYGPKG--IGALY--IR-RNPRTR  217 (397)
Q Consensus       155 --l~~i~~l~~~~gi~livD~a~~~~~~--------~~-~~~~~-~~d~~~~s~~K~~g~~g--~g~~~--~~-~~~~~~  217 (397)
                        +++|+++|++||++||+|++|.....        +. .+... ...+++.|++|.+++.|  +|+++  .. ++....
T Consensus       214 e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~  293 (423)
T PLN02397        214 EQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVR  293 (423)
T ss_pred             HHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHH
Confidence              46688889999999999999872211        11 11111 23577899999777555  68875  32 222121


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCC
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNN  288 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~  288 (397)
                      +...+...   ........+.....+...+++..      .+.+++..+.++++++.+.+.|++ +.   ++.+..+++ 
T Consensus       294 ~~~~~~~~---~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~-~~~~~~~~~~~p~g-  368 (423)
T PLN02397        294 VKSQLKLI---ARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEA-RGSPGDWSHITKQI-  368 (423)
T ss_pred             HHHHHHHH---HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCcccCCc-
Confidence            11111000   00001122333333333344321      123667788999999999999998 52   144333322 


Q ss_pred             CCCceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850         289 RIPHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL  365 (397)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  365 (397)
                        +.++++.   .+ .++...|.   +|.+..+                         +  |+++.. .+.+++++++++
T Consensus       369 --g~fl~~~---l~-~~~~~~Ll~~~~V~v~~~-------------------------~--Ri~~~~-~~~~~i~~~~~~  414 (423)
T PLN02397        369 --GMFSFTG---LN-KEQVDRMTKEYHIYMTRD-------------------------G--RISMAG-LSSKNVPYLADA  414 (423)
T ss_pred             --eEEEecC---CC-HHHHHHHHHhCCEEECCC-------------------------C--eEEEee-CCHHHHHHHHHH
Confidence              2233333   33 34666664   6776522                         3  999974 589999999999


Q ss_pred             HHHHHH
Q psy8850         366 LKMKVK  371 (397)
Q Consensus       366 l~~~~~  371 (397)
                      |+++++
T Consensus       415 i~~~~~  420 (423)
T PLN02397        415 IHAVVT  420 (423)
T ss_pred             HHHHHh
Confidence            999974

>KOG0634|consensus

Probab=99.91  E-value=4.8e-22  Score=176.08  Aligned_cols=307  Identities=16%  Similarity=0.116  Sum_probs=210.3

Q ss_pred             hHHHHHHHHHHHHHHHhC----CCCC---cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCC
Q psy8850          38 TAEKAIEKARNEVAQLIY----ADPR---EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDG  110 (397)
Q Consensus        38 ~~~~~~~~~~~~la~~~~----~~~~---~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g  110 (397)
                      ....+..++...+.+..+    .++.   ++.+|+|.|.++..++..++    ++||.|++....|++...+++.+   |
T Consensus        97 g~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~----N~gd~vlie~~ty~~AL~s~~a~---g  169 (472)
T KOG0634|consen   97 GQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI----NRGDHVLIEEYTYPSALQSMEAL---G  169 (472)
T ss_pred             ccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh----cCCCceEEecccchHHHHhcccc---C
Confidence            334456666666666555    2322   59999999999999999999    89999999999888888777777   9


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcC---------Cce-EEEEecccCcccccccH---HHHHHHHHhcCcEEEEeccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICS---------DTI-LVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAV  177 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~---------~~~-~v~~~~~~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~  177 (397)
                      .+++.|+.|++| +++|.|++.+..         ++. +.+++..+||||...++   ++|.++||+|++++|+|+.|.+
T Consensus       170 v~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~  248 (472)
T KOG0634|consen  170 VKIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYF  248 (472)
T ss_pred             ceEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccce
Confidence            999999998888 789999998752         243 55899999999999996   5799999999999999999863


Q ss_pred             Cccc--------------------------cccCcccccEEEeccccccCCC-CceEEEEecCCCCccccccccCCcccc
Q psy8850         178 GKID--------------------------INIQNYKVDLMSFSAHKIYGPK-GIGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       178 ~~~~--------------------------~~~~~~~~d~~~~s~~K~~g~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      -...                          ++++.-+..+-.-||+|+.+|. .+|++.+++..++++.....       
T Consensus       249 Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae-------  321 (472)
T KOG0634|consen  249 LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAE-------  321 (472)
T ss_pred             eeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcc-------
Confidence            2211                          1111114456678999977763 37888888655555432211       


Q ss_pred             ccCCCCchhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCceEEEEec-----
Q psy8850         231 LRSGTLATHQIVGMGEAFRLA-----RIEMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFN-----  299 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-----  299 (397)
                      .....++.....-+.+.++.+     .+++.+++..+..++..+..+|.+++|.. ..+.++.  .+.++++.++     
T Consensus       322 ~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~--aGmFiwv~i~~~~~~  399 (472)
T KOG0634|consen  322 VATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPK--AGMFIWVEIPYINFD  399 (472)
T ss_pred             eeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCC--cceEEEEEecccccc
Confidence            111112222222233344433     23577788899999999999999988875 3333322  2567778775     


Q ss_pred             ---CCC-hHHHHHHh--C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         300 ---FIE-GESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       300 ---~~~-~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                         ..+ .+++...+  + ||.+.+|..|...            ....+..-++|++++. .+.+++++.++++..++++
T Consensus       400 ~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~------------p~~s~~kiffRls~a~-a~~e~l~~g~~rf~~~ike  466 (472)
T KOG0634|consen  400 TKKSINQIEEIIFIKAVKNGVKLVCGSWFMVD------------PESSWSKIFFRLSIAF-AEPEKLDEGIERFGSVIKE  466 (472)
T ss_pred             cccchHHHHHHHHHHHHHCCeEEecCceeEEc------------CccCCCcceEEEEeec-CCHHHHHHHHHHHHHHHHH
Confidence               122 12222222  2 9999999877641            0011122489999997 4688999999999999887


Q ss_pred             HH
Q psy8850         373 LR  374 (397)
Q Consensus       373 ~~  374 (397)
                      .-
T Consensus       467 ~f  468 (472)
T KOG0634|consen  467 HF  468 (472)
T ss_pred             Hh
Confidence            53

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.91  E-value=9.2e-22  Score=186.06  Aligned_cols=315  Identities=16%  Similarity=0.163  Sum_probs=200.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc---
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK---   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~---   84 (397)
                      +.+|.+.+++.+.+.... .... .     ...+...++.+.++++.+.  +++++++||++|++++++.+.....+   
T Consensus        55 ~~~p~v~~a~~~~~~~~~-~~~~-~-----~~~~~~~~la~~l~~~~~~--~~v~~~~gg~eA~~~al~~a~~~~~~~~~  125 (396)
T PRK02627         55 HCHPKLVEAIQEQAAKLI-HTSN-L-----YYIEPQEELAEKLVELSGM--DKVFFCNSGAEANEAAIKLARKYGHKKGI  125 (396)
T ss_pred             CCCHHHHHHHHHHHhhcc-cccc-c-----cCCHHHHHHHHHHHhhcCC--CEEEECCCcHHHHHHHHHHHHHHhcccCC
Confidence            446899999999887532 1111 1     1145667788888888765  58999999999999999976532211   


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEE---EEeccCCCC----CCCHHHHHHHhcCCceEEEEecccCcccc-ccc--
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRV---TYLKPKNNG----LITLSQLEEKICSDTILVSVMLVNNEIGV-IQP--  154 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v---~~v~~~~~~----~~d~~~l~~~i~~~~~~v~~~~~~~~tG~-~~~--  154 (397)
                      ++++|++..+.|+..........  +...   ...+...+.    ..|++++++++.+++++|++++++|++|. .+|  
T Consensus       126 ~~~~ii~~~~~yhg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~  203 (396)
T PRK02627        126 EKPEIITAENSFHGRTLATLSAT--GQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKE  203 (396)
T ss_pred             CCCeEEEECCCcCcccHHHHHhc--CCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccCCHH
Confidence            12678888887766554433331  1111   111211111    12899999999889999999999999994 444  


Q ss_pred             -HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccccccC-CCCceEEEEecCCCCccccccccCCc
Q psy8850         155 -ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       155 -l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                       +++|.++|++||+++|+|++|+ ++..    ..+.....+|+++  ++|.++ +..+|+++++++..+.+......   
T Consensus       204 ~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t--~sK~~~~G~rig~~~~~~~~~~~~~~~~~~---  278 (396)
T PRK02627        204 YLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMT--LAKGLGGGVPIGAVLAKEKVADVFTPGDHG---  278 (396)
T ss_pred             HHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEE--EcchhhCCcccEEEEEcHHHHhccCCCCCC---
Confidence             7899999999999999999987 3221    1122233467665  559444 33489999987655544332111   


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEEecCCChH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFNFIEGE  304 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (397)
                         ... ..+.....+..++++.+.+  .+..++++++.+++++.|.+.   ++.+....    ..+.++++.++ .+..
T Consensus       279 ---~t~-~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~i~~~-~~~~  347 (396)
T PRK02627        279 ---STF-GGNPLACAAALAVIEIIEE--EGLLENAAEVGEYLRAKLRELLEKYPGIKEVR----GLGLMIGIELD-RPAA  347 (396)
T ss_pred             ---CCC-CCCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeec----cCcEEEEEEec-CcHH
Confidence               112 2344555555577776543  234555556666666655541   22221111    12445666663 3566


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ++...+.  ||.+.++.                       .+++|++++..++++++++++++|.+++++
T Consensus       348 ~~~~~l~~~Gv~v~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~  394 (396)
T PRK02627        348 EIVKKALEKGLLINVTG-----------------------DNVLRLLPPLIISKEEIDEAVDRLEEVLKE  394 (396)
T ss_pred             HHHHHHHHCCeEEeecC-----------------------CCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence            7776665  78887641                       267999998778999999999999998865

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.91  E-value=2.4e-21  Score=178.28  Aligned_cols=328  Identities=17%  Similarity=0.177  Sum_probs=216.9

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      ..+..+|.|++++++++.... ..+. .+.    ..+...++.+.|.+++..+ ...++|+++|++|++++++. .+.++
T Consensus        69 ~~GH~hP~Vv~Av~~q~~~~~-h~~~-~~~----~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKi-Ar~~T  141 (447)
T COG0160          69 NLGHNHPRVVEAVKRQLAKLN-HTHT-RDL----YYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKI-ARAYT  141 (447)
T ss_pred             ccCCCCHHHHHHHHHHHHHhh-cccC-Ccc----cchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHH-HHHHh
Confidence            345679999999999988733 1111 111    1145667777777777763 44699999999999999994 55666


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhC-----C-----cEEEEeccCCCC------------CCCHHHHHHHhc------C
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLEND-----G-----FRVTYLKPKNNG------------LITLSQLEEKIC------S  135 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~-----g-----~~v~~v~~~~~~------------~~d~~~l~~~i~------~  135 (397)
                      ++...|.+....|..+..++......     |     ..+..+|.....            .-..+.+++.+.      +
T Consensus       142 gr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~  221 (447)
T COG0160         142 GRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPE  221 (447)
T ss_pred             CCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCC
Confidence            76666666666667777666654322     1     136666665321            112344555442      2


Q ss_pred             CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCCCCc
Q psy8850         136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGPKGI  205 (397)
Q Consensus       136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~  205 (397)
                      ++.+++++.++...|.+.|    ++++.++|++||+++|+|++|+. |..    .+......+|++++|  | +.++..+
T Consensus       222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~a--K~ig~G~Pl  299 (447)
T COG0160         222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLA--KSLGGGLPL  299 (447)
T ss_pred             ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEec--ccccCCCce
Confidence            5789999999999999877    78999999999999999999972 221    223333468999998  9 7666668


Q ss_pred             eEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC
Q psy8850         206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD  285 (397)
Q Consensus       206 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  285 (397)
                      |.++.+++... ..+-.++      ++.+.++. .+++..+.|+.+.+  +.+.++..++.++|+++|.+.-....++++
T Consensus       300 ~avv~r~ei~~-~~~g~~~------~Tf~GNpv-a~Aaa~AvL~vie~--e~L~~~a~~~G~~l~~~L~~l~~~~~~Igd  369 (447)
T COG0160         300 SAVVGRAEIMD-WPPGGHG------GTFGGNPV-ACAAALAVLDVIEE--ENLLERAAELGEYLRDRLEELQEKHPLIGD  369 (447)
T ss_pred             eEEeccHHhcc-cCCcccC------CCCCcCHH-HHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHhhcCceec
Confidence            99999987666 3333322      22344444 44444488887766  478888888888998888762233334433


Q ss_pred             CCCCCCceEEEEecCC-----Ch----HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850         286 MNNRIPHNLNISFNFI-----EG----ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT  354 (397)
Q Consensus       286 ~~~~~~~~~~~~~~~~-----~~----~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~  354 (397)
                      .- ..+.++-+.+...     +.    ..+...+.  |+.+...                 |.    .++.|||.++..+
T Consensus       370 VR-G~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~-----------------G~----~~nviRi~PPL~i  427 (447)
T COG0160         370 VR-GLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTC-----------------GP----HGNVLRILPPLTI  427 (447)
T ss_pred             cc-ccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEecc-----------------CC----CCcEEEEeCCccc
Confidence            21 1234445555421     22    23333333  6544432                 11    1389999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy8850         355 TEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       355 ~~~~i~~~~~~l~~~~~~~  373 (397)
                      +++++|.+++.|.+++.++
T Consensus       428 s~e~~d~~l~il~~al~~~  446 (447)
T COG0160         428 SDEELDEGLDILEEALKEA  446 (447)
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            9999999999999998764

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.91  E-value=2.5e-22  Score=187.28  Aligned_cols=311  Identities=17%  Similarity=0.148  Sum_probs=205.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCC-CcEEEeCChh-HHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEe
Q psy8850          39 AEKAIEKARNEVAQLIYADP-REIIWTSGAT-ESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL  116 (397)
Q Consensus        39 ~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t-~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v  116 (397)
                      .......+++.+++++|++. +..++++|+| .++.+++.++... ..++++|+++...|.++..++..+   |++++.+
T Consensus       103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~-~~~gd~VI~p~~th~S~~kAi~~~---G~~pv~V  178 (444)
T TIGR03531       103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK-RPKAKYVIWPRIDQKSCIKAISTA---GFEPRVI  178 (444)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc-CCCCCEEEEECcChHHHHHHHHHc---CCeEEEe
Confidence            34577789999999999873 3488899999 6888887765421 125799999999999999999988   9999999


Q ss_pred             cc---CCCCCCCHHHHHHHhcC---CceEEEEeccc-CcccccccHHHHHHHHHhcCcEEEEecccccCcccc-----cc
Q psy8850         117 KP---KNNGLITLSQLEEKICS---DTILVSVMLVN-NEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI-----NI  184 (397)
Q Consensus       117 ~~---~~~~~~d~~~l~~~i~~---~~~~v~~~~~~-~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~-----~~  184 (397)
                      +.   ++++.+|+++++++|++   +..++++.+++ +++|...|+++|+++|++||+++|+|++|+.+....     ..
T Consensus       179 d~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g  258 (444)
T TIGR03531       179 ETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKA  258 (444)
T ss_pred             eeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhcc
Confidence            95   35678999999999986   34455554443 445688999999999999999999999999755321     11


Q ss_pred             Ccc-cccEEEecccc-ccCCCCceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         185 QNY-KVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKR  261 (397)
Q Consensus       185 ~~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~  261 (397)
                      ... .+|++++|+|| +..|.+.|+++.+++ ....+.....+.         ..+.....+...++....++++++.++
T Consensus       259 ~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g~---------~~~s~~~~~~~~ll~~G~~g~~~li~~  329 (444)
T TIGR03531       259 IKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGR---------ASASPSLDVLITLLSLGSKGYLELLKE  329 (444)
T ss_pred             ccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccCC---------CCChHHHHHHHHHHHhCHHHHHHHHHH
Confidence            112 36999999999 555655666667433 333333322110         112233333444555556788999999


Q ss_pred             HHHHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEEEEec---CCChHHHHHHhC-----C-cEecccCccCCCCCChh
Q psy8850         262 ILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFN---FIEGESLLMAIK-----D-IAVSSGSACTSASLEPS  329 (397)
Q Consensus       262 ~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~-----~-i~~~~g~~~~~~~~~~~  329 (397)
                      ..++++++.+.|.+ +.   |..+...+.+...  +.+.+.   +.+...+...|.     | ..+.+|..-.-    ..
T Consensus       330 ~~~~a~~l~~~L~~-l~~~~~~~~~~~~~n~is--~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~----~~  402 (444)
T TIGR03531       330 RKEMYKYLKELLQK-LAERHGERLLDTPENPIS--SAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSKTV----GG  402 (444)
T ss_pred             HHHHHHHHHHHHHH-HHHhhCcEeecCCCCcee--EEEecccccccCHHHHHHHHHhCCCCCceeecCCCceEE----CC
Confidence            99999999998877 42   3455544333322  233333   334556666663     2 12333321000    01


Q ss_pred             hHHHhhCCC-ccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         330 YVLRALGCN-DELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       330 ~~~~~~g~~-~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ..+..+|.. ..+...++-+....-++.+|||.++++|.++
T Consensus       403 ~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       403 CEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             EEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence            122233322 2223457777777778999999999999876

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.91  E-value=2.4e-21  Score=182.31  Aligned_cols=318  Identities=15%  Similarity=0.197  Sum_probs=202.9

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|.|.+++.+++...... .. .     ...+...++.+.|+++.+.  +.++|++||++|++.+++.+.....  
T Consensus        49 lGh~~p~v~~a~~~~~~~~~~~-~~-~-----~~~~~~~~la~~L~~~~~~--~~~~f~~SGseA~e~Alk~ar~~~~~~  119 (397)
T TIGR03246        49 LGHAHPELVKALIEQADKLWHI-GN-G-----YTNEPVLRLAKKLVDATFA--DKVFFCNSGAEANEAALKLARRYALDK  119 (397)
T ss_pred             CCCCCHHHHHHHHHHHHhcccc-cC-c-----cCCHHHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence            4456899999999998763211 10 1     1133467889999998764  4899999999999999997643321  


Q ss_pred             --cCCCEEEEcCCCC-hhhHHHHHHHhhC---------CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850          84 --KRGKHIITVQTEH-KSVLDSIRKLEND---------GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        84 --~~g~~vl~~~~~~-~s~~~~~~~~~~~---------g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~  151 (397)
                        ..+++|+..+..| .++..++......         ...+..+|.+     |++++++++.+++++|+++.++++.|.
T Consensus       120 ~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~aavi~Epi~~~~G~  194 (397)
T TIGR03246       120 HGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAAAKALISDKTCAVIVEPIQGEGGV  194 (397)
T ss_pred             CCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC-----CHHHHHHHhccCeEEEEEecccCCCCC
Confidence              1234565555544 4444333322100         0123334433     899999999889999999988888886


Q ss_pred             ccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc
Q psy8850         152 IQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ  221 (397)
Q Consensus       152 ~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~  221 (397)
                      +.|    +++|.++|++||+++|+|++|. +|..    ........+|++++  +| +.|+..+|+++++++....+...
T Consensus       195 ~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~--~K~lggG~pigav~~~~~i~~~~~~~  272 (397)
T TIGR03246       195 VPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTS--AKALGGGFPIGAMLTTTEIAAHLKVG  272 (397)
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEe--ehhhhCCcceeEEEEcHHHHHhccCC
Confidence            653    7999999999999999999984 2211    11112235788765  59 54434479988887665544322


Q ss_pred             cccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-EEEeCCCCCCCCceEEEEecC
Q psy8850         222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE-IYINGDMNNRIPHNLNISFNF  300 (397)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~  300 (397)
                      ..      ....+ .+....++..++++.+.+  +++.++++++.+++++.|++ +.. ..++... ...+.++.+.+..
T Consensus       273 ~~------~~t~~-~~p~~~aaa~a~l~~~~~--~~l~~~~~~~~~~l~~~L~~-l~~~~~~~~~v-rg~G~~~~i~~~~  341 (397)
T TIGR03246       273 TH------GTTYG-GNPLACAVAGKVLDLVNT--PELLAGVKQRHDLFVDGLEK-INARYNVFSEI-RGKGLLIGAVLTE  341 (397)
T ss_pred             Cc------CCCCC-CCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHH-HHhcCCCeEee-ecCceEEEEEEcC
Confidence            11      12223 233445555577877643  56788888899999998887 421 1111111 1113444454432


Q ss_pred             ---CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         301 ---IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       301 ---~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                         .....+...|.  |+.+.+.                       +.+.+|++++..+++++|++++++|.+++.++
T Consensus       342 ~~~~~~~~~~~~l~~~Gv~~~~~-----------------------g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~~  396 (397)
T TIGR03246       342 AYQGKAKQFVNAAAEEGVIALIA-----------------------GPNVVRFAPSLVISDDDIDEGLARFERAIEQV  396 (397)
T ss_pred             chhhHHHHHHHHHHHCCeEEeec-----------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence               12445655554  6665431                       12789999999999999999999999988653

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.91  E-value=9.6e-23  Score=186.05  Aligned_cols=330  Identities=19%  Similarity=0.235  Sum_probs=207.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc---EEEeCChhHHHHHHHHHh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE---IIWTSGATESNNLAIKGA   78 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---i~~~~g~t~a~~~~l~~l   78 (397)
                      +|...+++.+++++...+...+  +.|....|.......+...-+.+.++++|++++++   -+=..||+.|+.+++.++
T Consensus        27 aSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aL  106 (399)
T PF00464_consen   27 ASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMAL  106 (399)
T ss_dssp             TT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHH
T ss_pred             CcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHH
Confidence            4556778999999988887655  35554233333333445555899999999998653   222458889999999999


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHHHh-------hCCcEEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCcc
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRKLE-------NDGFRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEI  149 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~~-------~~g~~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t  149 (397)
                      +    +|||+|+..+..++++...-....       ...+++..++++ +++.+|.+++++.+.+ +|++|++....+| 
T Consensus       107 l----~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~-  181 (399)
T PF00464_consen  107 L----KPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSYP-  181 (399)
T ss_dssp             T-----TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTS-
T ss_pred             H----hhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhcc-
Confidence            9    899999988877655543211110       014688888988 6889999999998875 8999999766544 


Q ss_pred             cccccHHHHHHHHHhcCcEEEEecccccCc-----cccccCcccccEEEecccc-ccCCCCceEEEEe------------
Q psy8850         150 GVIQPILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR------------  211 (397)
Q Consensus       150 G~~~~l~~i~~l~~~~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~------------  211 (397)
                       ...|++++.++|++.|++|++|.+|-.|.     .+-.+.  .+|++++|.|| +.||.| |+++.+            
T Consensus       182 -~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~--~ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~  257 (399)
T PF00464_consen  182 -RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFP--YADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKE  257 (399)
T ss_dssp             -S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCC--TSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-E
T ss_pred             -CccCHHHHHHHHHhcCcEEEecccccccceehheecCccc--cceEEEeeccccccccCc-eEEEEcCCccccCCcccc
Confidence             56789999999999999999999997433     332333  48999999999 999986 999988            


Q ss_pred             --cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC
Q psy8850         212 --RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN  288 (397)
Q Consensus       212 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  288 (397)
                        .++.+++....+.+      ..|.+....++++..+++... ..++++.+++.++++.|.+.|.+  .|+.++..  .
T Consensus       258 ~~~~l~~~I~~avfP~------~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~--~G~~v~~g--g  327 (399)
T PF00464_consen  258 IDEELAEKIDSAVFPG------LQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQE--RGFKVVTG--G  327 (399)
T ss_dssp             EEHHHHHHHHHHHTTT------T-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TT-EEGGG--S
T ss_pred             cHHHHHHHhccccCCC------cccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhh--CCcEEEEC--C
Confidence              22223333333221      234567788999988888764 35789999999999999999999  79998863  3


Q ss_pred             CCCceEEEEec--CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHH
Q psy8850         289 RIPHNLNISFN--FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEID  360 (397)
Q Consensus       289 ~~~~~~~~~~~--~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~  360 (397)
                      +..+++.+.+.  +.+..+..+.|.  ||.+..-.....              ..+.....|||+....    ..++|++
T Consensus       328 Td~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d--------------~~~~~~sGlRlGT~~lT~rG~~e~dm~  393 (399)
T PF00464_consen  328 TDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGD--------------RSPFVPSGLRLGTPALTRRGMKEEDMK  393 (399)
T ss_dssp             -SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTT--------------STTTT-SEEEEESHHHHHTT--HHHHH
T ss_pred             CCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCC--------------CCCCCCCEEEECCHHHHhCCCCHHHHH
Confidence            44678888875  356677777775  776653211100              1112237899996432    4588888


Q ss_pred             HHHHHH
Q psy8850         361 FTIKLL  366 (397)
Q Consensus       361 ~~~~~l  366 (397)
                      ++.+.|
T Consensus       394 ~iA~~I  399 (399)
T PF00464_consen  394 EIAELI  399 (399)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            877654

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.91  E-value=1.2e-21  Score=198.24  Aligned_cols=287  Identities=14%  Similarity=0.109  Sum_probs=215.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEecc
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKP  118 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~  118 (397)
                      -+.+.+++..++++.|+++.++.+..++|.+.+.++.++.. ..+++++|++++.+||++...+.... ..|++++.++.
T Consensus       120 Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~-~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~  198 (954)
T PRK05367        120 LEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRV-SKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDA  198 (954)
T ss_pred             HHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhh-ccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecC
Confidence            35677899999999999999999999999999988887642 11124899999999999999887754 45999999997


Q ss_pred             CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc
Q psy8850         119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK  198 (397)
Q Consensus       119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K  198 (397)
                      +.+    .+      .+++..+++. ..|.+|.+.|+++|+++||++|+++++|+.+.......+..++++|++++|.||
T Consensus       199 ~~d----~~------~~~~~~vlvq-~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qk  267 (954)
T PRK05367        199 AKA----LD------HDDVFGVLLQ-YPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQR  267 (954)
T ss_pred             ccC----CC------cccEEEEEEe-cCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcc
Confidence            642    11      2355555444 457889999999999999999999999997754444446778899999999999


Q ss_pred             c-----cCCCCceEEEEecCCCCccccccccCC-----------------ccccccCCCCchhHHHHHHHHH-----HHH
Q psy8850         199 I-----YGPKGIGALYIRRNPRTRIEAQIHGGG-----------------HEYGLRSGTLATHQIVGMGEAF-----RLA  251 (397)
Q Consensus       199 ~-----~g~~g~g~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~al-----~~~  251 (397)
                      |     +|+++.|+++++++....+.+.+.|+.                 +..+++.+++|.....++.+.+     .++
T Consensus       268 fg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~  347 (954)
T PRK05367        268 FGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYH  347 (954)
T ss_pred             cCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            7     444469999999887666655554431                 1135667788876543333333     223


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCCh
Q psy8850         252 -RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEP  328 (397)
Q Consensus       252 -~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~  328 (397)
                       ..|++++.++...++.++.+.|++  .++.+..+.  . ...+.+.++ .+..++.++|.  ||.+..-          
T Consensus       348 g~~Gl~~Ia~~~~~la~~l~~~L~~--~G~~~~~~~--~-f~~~~~~~~-~~~~~i~~~l~~~gi~~~~~----------  411 (954)
T PRK05367        348 GPEGLKAIARRVHRLAAILAAGLRA--LGLEVVHDS--F-FDTLTVEVG-GDAAAVLARALAAGINLRRV----------  411 (954)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHh--cCcccCCCC--C-CCeEEEeCC-CCHHHHHHHHHHCCceeccc----------
Confidence             457999999999999999999987  677766442  2 345566654 36778887776  6655211          


Q ss_pred             hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         329 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       329 ~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                                   ..+.+|+|+..++|++|||+++++|.
T Consensus       412 -------------~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        412 -------------DDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             -------------cCCEEEEEecccCCHHHHHHHHHHHc
Confidence                         12679999999999999999999997

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.91  E-value=3.5e-21  Score=182.01  Aligned_cols=313  Identities=15%  Similarity=0.176  Sum_probs=207.0

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh-----hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEe
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF-----YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL  116 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~-----~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v  116 (397)
                      ...++++.++++++.+  .+++++|||+|+.+++.++...     ..++||+|+++.++|+++..++...   |.+++.+
T Consensus        64 ~~~~fe~~lA~~~g~~--~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~---G~~pv~v  138 (438)
T PRK15407         64 FNDAFEKKLAEFLGVR--YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQN---GLVPVFV  138 (438)
T ss_pred             hHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHc---CCEEEEE
Confidence            4678999999999986  6899999999999998876311     1268999999999999999888776   9999999


Q ss_pred             ccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccc--cCcccccEEE
Q psy8850         117 KPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN--IQNYKVDLMS  193 (397)
Q Consensus       117 ~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~--~~~~~~d~~~  193 (397)
                      +++ .++.+|++++++++++++++|+++++   .|...++++|.++|+++|++||+|++|+.|...-+  ...+ -|+.+
T Consensus       139 dvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~-gd~~~  214 (438)
T PRK15407        139 DVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTF-GDIAT  214 (438)
T ss_pred             ecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeecc-CceEE
Confidence            987 57789999999999999999999875   68888999999999999999999999998876433  1122 27788


Q ss_pred             eccc--c-ccCCCCceEEEEecCCCCccccccccCCcc---------------------------ccc---cCCCCchhH
Q psy8850         194 FSAH--K-IYGPKGIGALYIRRNPRTRIEAQIHGGGHE---------------------------YGL---RSGTLATHQ  240 (397)
Q Consensus       194 ~s~~--K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~---~~~~~~~~~  240 (397)
                      +||+  | +..+.| |+++.+++........+.+.+..                           ..+   ..|. | ..
T Consensus       215 fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-n-~r  291 (438)
T PRK15407        215 LSFYPAHHITMGEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGY-N-LK  291 (438)
T ss_pred             EeCCCCCCccccCc-eEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccccc-c-cC
Confidence            8876  5 444444 89988866443321111111100                           000   0111 1 01


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCc-EEEeCCCCCC--CCceEEEEecC---CChHHHHHHhC--
Q psy8850         241 IVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEE-IYINGDMNNR--IPHNLNISFNF---IEGESLLMAIK--  311 (397)
Q Consensus       241 ~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~l~--  311 (397)
                      +-.+.+++-.. .+.++++.++.+++.+++.+.|.+ +++ +.+...+...  ..+.+.+.++.   .+..++.+.|.  
T Consensus       292 msel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Rd~l~~~L~~~  370 (438)
T PRK15407        292 ITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLAS-LEDFLILPEATPNSDPSWFGFPITVKEDAGFTRVELVKYLEEN  370 (438)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCcCCCCCeeEEEEEEEEECCcCCCCHHHHHHHHHHC
Confidence            11122222222 224667778888888899999987 664 3222222221  12234444442   34678888887  


Q ss_pred             CcEecccCccC-CCCCChhhHHHhhCC--------CccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACT-SASLEPSYVLRALGC--------NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       312 ~i~~~~g~~~~-~~~~~~~~~~~~~g~--------~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ||.....  +. +....  ..++..+.        ........|-+.+....+++|+++++++|++++.
T Consensus       371 GI~~~~~--~~~~~~~~--p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        371 KIGTRLL--FAGNLTRQ--PYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             CCCcccc--CCCccccC--hhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            6654432  21 21111  12222111        1122356788888877899999999999999874

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.90  E-value=1.1e-21  Score=165.54  Aligned_cols=312  Identities=16%  Similarity=0.081  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHHHHHhCC--CCCcEEEeCChhHHHHHHHHHhHhhhccC--CCEEEEcCCCChhhHHHHHHHhhCCcEEEE
Q psy8850          40 EKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKR--GKHIITVQTEHKSVLDSIRKLENDGFRVTY  115 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~~--g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~  115 (397)
                      ...++.+.+.+.+.+|.  .+++|.+|+|++.|...+...+...+...  +..++=..|+|-++..+.-.    +--.+.
T Consensus        77 ~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~----~d~fVs  152 (417)
T COG3977          77 AVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLE----EDLFVS  152 (417)
T ss_pred             hHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccC----ccceee
Confidence            45677778888888875  56689999999999998888776544221  22344456667666533110    111222


Q ss_pred             ecc----CC----CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcccccc
Q psy8850         116 LKP----KN----NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDINI  184 (397)
Q Consensus       116 v~~----~~----~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~~~~  184 (397)
                      +..    .+    ..++|.++++  +.+.+.+||++-|.||||.+..   +.++.++|++||+++++|.+|+.+...+.+
T Consensus       153 ~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iif  230 (417)
T COG3977         153 AKPNIELLPAGQFKYHVDFEHLH--IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIF  230 (417)
T ss_pred             ccCCcccccccceeeccCHHHcc--cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceec
Confidence            211    12    2367777774  5688999999999999999877   456778899999999999999976643333


Q ss_pred             Ccc-----cccEEEeccccccCCC-CceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy8850         185 QNY-----KVDLMSFSAHKIYGPK-GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE  258 (397)
Q Consensus       185 ~~~-----~~d~~~~s~~K~~g~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~  258 (397)
                      .+.     ..-+.|+|++|++-|. .+|+++.+.+....+...    +......++.........+...=++.+-.-.-+
T Consensus       231 sd~~~~w~~NiilC~SLSK~GLPG~R~GIiIane~viqaitnm----n~iisLap~~~G~Aia~~mie~gdl~rlseqVI  306 (417)
T COG3977         231 SDATPLWNENIILCMSLSKLGLPGSRCGIIIANEKVIQAITNM----NGIISLAPGRMGPAIAAEMIESGDLLRLSEQVI  306 (417)
T ss_pred             ccccccCCCCEEEEeehhhcCCCCcceeEEEccHHHHHHHHhc----cceeeecCCCccHHHHHHHhhcchHHHHHHHhh
Confidence            322     4568899999954432 389999987654443321    111112222222222222211111111111223


Q ss_pred             HHHHHHHHHHHHHHHhhhcCc--EEEeCCCCCCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCCCCCChhhHH
Q psy8850         259 LKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTSASLEPSYVL  332 (397)
Q Consensus       259 ~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~  332 (397)
                      +-.++++.+...+.|+.+++.  +.+..+++   ..++|++|.+  ++..+++++|+  |+.+.||..|.+|-.      
T Consensus       307 rPFY~~~~q~~~~~l~~~lp~~~~~iHkpEG---AIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~------  377 (417)
T COG3977         307 RPFYRNRVQTTIAILRRYLPEYRCLIHKPEG---AIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLD------  377 (417)
T ss_pred             hHHHHHHHHHHHHHHHHhcCccceeeecCCc---ceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCC------
Confidence            344444444444444444443  34455554   4566777764  56889999998  999999999988421      


Q ss_pred             HhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         333 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       333 ~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                          .+.+..+.++|++...  +++.|++.+.+|.+.++++-+.
T Consensus       378 ----~ewpH~hqC~Rmn~~~--~~~~ie~Gva~lae~ve~~yq~  415 (417)
T COG3977         378 ----KEWPHTHQCMRMNYVP--EPEKIEKGVAILAEEVERAYQE  415 (417)
T ss_pred             ----CCCCCccceEEEecCC--CHHHHHHHHHHHHHHHHHHHhc
Confidence                1223356899999986  7999999999999988876543

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.90  E-value=1e-21  Score=181.73  Aligned_cols=303  Identities=17%  Similarity=0.137  Sum_probs=199.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.+++...+...++++.++++.|.+  ..+.++||+.|+.+++.++.    ++||+|+++...|..+...... +...|+
T Consensus        56 ~~Y~r~~~P~~~~lE~~la~leg~~--~av~~sSG~aAi~~al~all----~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi  129 (384)
T PRK06434         56 YIYTRWGNPTVQAFEEKYAVLENAE--HALSFSSGMGAITSAILSLI----KKGKRILSISDLYGQTFYFFNKVLKTLGI  129 (384)
T ss_pred             cceeCCCChhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEecCccchHHHHHHHHHHhcCc
Confidence            3444455678899999999999986  57888999999999999887    8999999998888777766633 444599


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      +++++++++...++       +. +++++|+++++.||++.+.|+++|.++||+++  +++|++++.+.... ....++|
T Consensus       130 ~v~fvd~~~~~~~~-------l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~-pl~~gaD  199 (384)
T PRK06434        130 HVDYIDTDRLNSLD-------FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQN-PLDLGAD  199 (384)
T ss_pred             EEEEECCCChhhee-------ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCC-chhcCCC
Confidence            99999987432222       22 37899999999999999999999999999998  56799987554321 2235899


Q ss_pred             EEEecccc-ccCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHK-IYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K-~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      ++++|.+| +.|+.+  .|+++.+++ ..+++.......       ....+....+-+...+    +.++.+.++..+++
T Consensus       200 ivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~-------G~~~~~~~A~l~~~gL----~tL~~R~~r~~~~a  268 (384)
T PRK06434        200 VVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTL-------GSNPDPIQAYLALRGL----KTLGLRMEKHNKNG  268 (384)
T ss_pred             EEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhCC----CcHHHHHHHHHHHH
Confidence            99999999 555443  466666543 222222111010       0111211111111112    24667788889999


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------CCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccCC----CCCCh---
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------NRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACTS----ASLEP---  328 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~----~~~~~---  328 (397)
                      ..+.+.|++ .|.+..+.-|+        ...++++.|.+++. ...++.+.|+  .+..+-|...+.    ..+.+   
T Consensus       269 ~~~a~~L~~-~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~  347 (384)
T PRK06434        269 MELARFLRD-SKKISNVYYPDTEIGKKVLRGFGGMLSFELRSMEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSSL  347 (384)
T ss_pred             HHHHHHHHc-CCCccEEECCChHHHHHhcCCCCceEEEEECCHHHHHHHHHhCCcceEccCCCCCCeeeECCCccccccC
Confidence            999999998 77664332222        23467888888642 1335555555  344444543322    12111   


Q ss_pred             -hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         329 -SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       329 -~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                       ....+..|+.+    +.||||++.    |+++.+++.|.+++.
T Consensus       348 ~~e~~~~~gi~~----~liRlsvGl----Ed~~dLi~dl~~Al~  383 (384)
T PRK06434        348 SPEERERLGISD----NLVRFSIGI----EDIDDLIKDIENALS  383 (384)
T ss_pred             CHHHHHhcCCCc----CeEEEEeCc----CCHHHHHHHHHHHhc
Confidence             12234566654    899999997    667777777777653

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.90  E-value=3.2e-21  Score=182.84  Aligned_cols=331  Identities=14%  Similarity=0.126  Sum_probs=207.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|.+.+++++++..... ..    ..+ ...+...++.+.|++++....+.+.|++||++|++.+++....++.  
T Consensus        56 lGh~~p~v~~ai~~q~~~~~~-~~----~~~-~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~  129 (423)
T PRK05964         56 HGHNHPYIDQAIREQLDRLDH-VI----FAG-FTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNR  129 (423)
T ss_pred             CCCCCHHHHHHHHHHHhhCCC-cc----ccc-cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence            346689999999999876221 00    001 1123456778888888753345799999999999999996543311  


Q ss_pred             --cCCCEEEEcCCCChhhHHHHHHHhhCC----------cEEEEeccCCC--CCCCHHHHHHHhc---CCceEEEEec-c
Q psy8850          84 --KRGKHIITVQTEHKSVLDSIRKLENDG----------FRVTYLKPKNN--GLITLSQLEEKIC---SDTILVSVML-V  145 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~~~~~~~~~~g----------~~v~~v~~~~~--~~~d~~~l~~~i~---~~~~~v~~~~-~  145 (397)
                        ..+.+|+....+|++.......+...+          ..+..++...+  ...+++++++.+.   +++.+|+++. +
T Consensus       130 ~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i  209 (423)
T PRK05964        130 GEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLV  209 (423)
T ss_pred             CCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence              134677777777777654443322110          11233343311  1122788888884   4577888887 5


Q ss_pred             cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCC
Q psy8850         146 NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNP  214 (397)
Q Consensus       146 ~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~  214 (397)
                      ++.+|...+    +++|.++|++||+++|+|+++. +|..    ..+.....+|++++|  | +.|+ .++|+++.+++.
T Consensus       210 ~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~~p~~av~~~~~i  287 (423)
T PRK05964        210 QGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLS--KGLTGGYLPLAATLCTAEI  287 (423)
T ss_pred             ccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeeeee--hhhhcCcccceEEEEcHHH
Confidence            888888775    7899999999999999999986 3221    112233468887766  9 5444 458888888766


Q ss_pred             CCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceE
Q psy8850         215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL  294 (397)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  294 (397)
                      .+.+............... ..+...+++..++++.+.+  ..+.++..++.+++++.|++ +.....+.+ ....+.++
T Consensus       288 ~~~~~~~~~~~~~~~~~T~-~~np~~~aaa~a~l~~l~~--~~~~~~~~~~g~~l~~~l~~-l~~~~~i~~-vrg~Gl~~  362 (423)
T PRK05964        288 FEAFYSDDRAKAFMHSPSY-TANPLACAAANASLDLFED--EPVLERVAALSAGLAEGLEP-FRDLPGVAD-VRVLGAIG  362 (423)
T ss_pred             HHhhhcCCcccccccCCCC-CcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHh-hccCCCeEE-eecccEEE
Confidence            5544321000000001111 2455667777788887764  35677888888888888877 433222211 11124555


Q ss_pred             EEEecCCC----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         295 NISFNFIE----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       295 ~~~~~~~~----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      .+.+.+.+    ...+...|.  |+.+.+.                        ++.+|++++..+|++|||+++++|++
T Consensus       363 ~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~------------------------~~~lR~~p~l~~t~edId~~v~~l~~  418 (423)
T PRK05964        363 AVELDRPVLERDGPALRAFALERGVLLRPL------------------------GNTIYLMPPYIITAEELDRITDAIVE  418 (423)
T ss_pred             EEEeccCcchhHHHHHHHHHHHCCeEEEec------------------------CCEEEEeCCcccCHHHHHHHHHHHHH
Confidence            66665432    345555554  6666532                        26799999999999999999999999


Q ss_pred             HHHHH
Q psy8850         369 KVKKL  373 (397)
Q Consensus       369 ~~~~~  373 (397)
                      +++++
T Consensus       419 al~~~  423 (423)
T PRK05964        419 VADEL  423 (423)
T ss_pred             HHhhC
Confidence            98763

>PLN00144 acetylornithine transaminase

Probab=99.90  E-value=1.1e-20  Score=176.32  Aligned_cols=316  Identities=16%  Similarity=0.164  Sum_probs=201.0

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc-
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK-   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~-   84 (397)
                      .+..+|++.+++.+++.... ....      ....+...++.+.|++..+  .+.++|++||++|++.+++.......+ 
T Consensus        29 lGh~~p~v~~ai~~q~~~~~-~~~~------~~~~~~~~~la~~l~~~~~--~~~v~f~~sGseA~e~AlklAr~~~~~~   99 (382)
T PLN00144         29 LGHGDPDWVKAVAEQAGTLA-HVSN------VYHTIPQVELAKRLVASSF--ADRVFFCNSGTEANEAAIKFARKYQRVR   99 (382)
T ss_pred             CCCCCHHHHHHHHHHHHhcC-Cccc------cccCHHHHHHHHHHHhcCC--CCeEEEeCCcHHHHHHHHHHHHHHHhcc
Confidence            34678999999999998622 1111      0112345567777777654  358999999999999999965433211 


Q ss_pred             ----C------CCEEEEcCCCChhhHHHHHHHhhC-Cc---------EEEEeccCCCCCCCHHHHHHHhc-CCceEEEEe
Q psy8850          85 ----R------GKHIITVQTEHKSVLDSIRKLEND-GF---------RVTYLKPKNNGLITLSQLEEKIC-SDTILVSVM  143 (397)
Q Consensus        85 ----~------g~~vl~~~~~~~s~~~~~~~~~~~-g~---------~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~  143 (397)
                          +      +.+|+....+|++.......+... ..         .+..+|.+     |++.+++.+. .++++|+++
T Consensus       100 ~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~~~aavi~e  174 (382)
T PLN00144        100 APDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYG-----NLEAARKLIQKGKTAAVFVE  174 (382)
T ss_pred             CCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCC-----CHHHHHHhcCCCCeEEEEEc
Confidence                0      356777676666655433332110 00         12333332     7899998885 468899999


Q ss_pred             cccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCCCCceEEEEecC
Q psy8850         144 LVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN  213 (397)
Q Consensus       144 ~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~  213 (397)
                      ..+||.|...+    +++|.++|++||+++|+|++++. +..    +.+...+.+|++++|  | +.++..+|+++++++
T Consensus       175 P~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~s--K~l~~G~pig~v~~~~~  252 (382)
T PLN00144        175 PVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLA--KPLAGGLPIGAVLVTEK  252 (382)
T ss_pred             cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEec--ccccCCcceEEEEEcHH
Confidence            99999665443    68999999999999999999872 221    112344568866665  9 554445899999877


Q ss_pred             CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCC
Q psy8850         214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRI  290 (397)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~  290 (397)
                      ..+.+.+...+      ... ..+....++..++++++.+  .++.+++.++.+++++.|.+.   .+.+.-+.  .  .
T Consensus       253 ~~~~~~~~~~~------~T~-~~~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vr--g--~  319 (382)
T PLN00144        253 VASAINPGDHG------STF-AGGPLVCNAALAVLDKISK--PGFLASVAKKGEYLRELLRRKLGGNPHVKEVR--G--V  319 (382)
T ss_pred             HHhccCCCCCC------CCC-CCCHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhhCCCceeee--c--C
Confidence            66665432211      122 2344555666678888865  344455555555555554431   23221111  1  2


Q ss_pred             CceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         291 PHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      +.++++.+. .+...+...+.  |+.+.++.                      .++.||++++..++++++++++++|.+
T Consensus       320 G~~~~l~l~-~~~~~~~~~~~~~Gv~i~~~~----------------------~~~~lrl~p~~~~~~~~i~~~~~~l~~  376 (382)
T PLN00144        320 GLLVGIQLD-VPAGPLVDACRDSGLLVLTAG----------------------KGDVVRLVPPLVISEAELEQAVEILAD  376 (382)
T ss_pred             ceEEEEEec-CccHHHHHHHHHCCeEEeecC----------------------CCCEEEEeCCCccCHHHHHHHHHHHHH
Confidence            566777773 34456666654  88776541                      027899999988899999999999999


Q ss_pred             HHHHH
Q psy8850         369 KVKKL  373 (397)
Q Consensus       369 ~~~~~  373 (397)
                      ++.++
T Consensus       377 ~l~~~  381 (382)
T PLN00144        377 CLPAL  381 (382)
T ss_pred             HHHhc
Confidence            98653

>KOG0053|consensus

Probab=99.89  E-value=6.6e-22  Score=177.29  Aligned_cols=309  Identities=15%  Similarity=0.108  Sum_probs=209.1

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhC-Cc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g~  111 (397)
                      +.+++...+....++..++++.|++  ..+..+||..|+..++..+.    +.|++|+.....|..+...+...... |+
T Consensus        69 ~~Ysr~~nPt~~~le~~iaal~ga~--~~l~fsSGmaA~~~al~~L~----~~g~~iV~~~~~Y~gT~~~l~~~~~~~gi  142 (409)
T KOG0053|consen   69 YDYSRSGNPTRDVLESGIAALEGAA--HALLFSSGMAAITVALLHLL----PAGDHIVATGDVYGGTLRILRKFLPKFGG  142 (409)
T ss_pred             cccccCCCCchHHHHHHHHHHhCCc--eEEEecccHHHHHHHHHHhc----CCCCcEEEeCCCcccHHHHHHHHHHHhCc
Confidence            4444555567888999999999988  57888888889999999888    78999999999999999988876554 99


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccE
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL  191 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~  191 (397)
                      +...++.+     +++++++++++++++|++++|.||+..+.|++++.++||++|+.|+||++.+.+. -.+...+++|+
T Consensus       143 e~~~vd~~-----~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~-~~~pL~lGADI  216 (409)
T KOG0053|consen  143 EGDFVDVD-----DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPY-NQDPLPLGADI  216 (409)
T ss_pred             eeeeechh-----hHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCccc-ccChhhcCCCE
Confidence            99988877     7999999999999999999999999999999999999999999999999987663 23444568999


Q ss_pred             EEeccccccCCCC---ceEEEEe-cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHKIYGPKG---IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       192 ~~~s~~K~~g~~g---~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      ++.|.+|++|+..   .|.++.+ .+...++.....       ...+.++.....-+...++.+    .-+.++..+++.
T Consensus       217 V~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~-------~lg~~~~p~~~~ll~Rglktl----~lRi~~~~ena~  285 (409)
T KOG0053|consen  217 VVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE-------DLGWCEDPFDLFLLSRGLKTL----HLRINKHSENAL  285 (409)
T ss_pred             EEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH-------HhcCCCCHHHHHHHhcCcchh----hhhHHHHHHHHH
Confidence            9999999655443   4777775 333333322211       111234433333332333222    223444455555


Q ss_pred             HHHHHHhhhcCcEEEeCCC--------------CCCCCceEEEE-ecC-CChHHHHHHhC--CcEecccCccCCCC----
Q psy8850         268 RLYNGLMESIEEIYINGDM--------------NNRIPHNLNIS-FNF-IEGESLLMAIK--DIAVSSGSACTSAS----  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~-~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~----  325 (397)
                      .+.+.|++ .+.++.+--+              .....+.+.+. +-. ..+.++...|+  ....+-|..++..+    
T Consensus       286 ~~A~~Le~-~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~~~a~kf~~~LK~~~~a~SlG~~eSL~~~p~~  364 (409)
T KOG0053|consen  286 KIALLLEA-HPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNEEHAKKFYDALKLFTKAPSLGGNESLAEPPAI  364 (409)
T ss_pred             HHHHHhhh-CCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCHHHHHHHHHhhhhhhcccCcCccchhhcchhh
Confidence            56666666 4555422111              11112222222 221 23456777776  35555555443311    


Q ss_pred             C---ChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         326 L---EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       326 ~---~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +   .+.......|+++    +.||+|++.    |++|.++..+.++++.+
T Consensus       365 mth~~~~e~~~~~Gi~~----~LVRvSVGi----Ed~~dL~~d~~~Al~~~  407 (409)
T KOG0053|consen  365 MTHASELEEREKFGIDP----NLVRVSVGI----EDIEDLIKDFQQALEKA  407 (409)
T ss_pred             hccCCCHHHHHhcCCCC----CcEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            1   1223344666665    899999995    77888888888877654

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.89  E-value=1.4e-20  Score=177.91  Aligned_cols=318  Identities=17%  Similarity=0.217  Sum_probs=199.1

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|++.+++.+.+......  . .. +.   .+...++.+.|+++.+.  +.+++++||++|++.+++....+..  
T Consensus        54 lGh~~p~v~~a~~~~~~~~~~~--~-~~-~~---~~~~~~l~~~l~~~~~~--~~~~~~~sGseA~e~a~klar~~~~~~  124 (403)
T PRK05093         54 LGHCHPALVKALKEQGEKLWHI--S-NV-FT---NEPALRLAKKLIDATFA--ERVFFANSGAEANEAAFKLARRYACDR  124 (403)
T ss_pred             CCCCCHHHHHHHHHHHHhcCcc--c-Cc-cC---CHHHHHHHHHHHhhCCC--CEEEEeCchHHHHHHHHHHHHHHHhhc
Confidence            3457899999999998753211  0 10 11   12345888888888754  4899999999999999996543221  


Q ss_pred             --cCCCEEEEcCCCChhh-HHHHHHHh---------hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850          84 --KRGKHIITVQTEHKSV-LDSIRKLE---------NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~-~~~~~~~~---------~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~  151 (397)
                        ..+++|+..+..|++. ..++....         ....++..+|.+     |++++++.+.+++++|+++.+++..|.
T Consensus       125 ~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~aaiiiep~~~~gg~  199 (403)
T PRK05093        125 HGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVIDDHTCAVVVEPIQGEGGV  199 (403)
T ss_pred             CCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhcCCeEEEEEecccCCCCC
Confidence              1235566556555554 43333210         001123334433     789999999888999999955444454


Q ss_pred             ccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEeccccccC-CCCceEEEEecCCCCccccc
Q psy8850         152 IQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQ  221 (397)
Q Consensus       152 ~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~  221 (397)
                      ..+    +++|.++|++||+++|+|++|+. +..    +.......+|+.  |++|.++ +..+|+++++++..+.+...
T Consensus       200 ~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--s~sK~l~~G~rig~vv~~~~i~~~l~~~  277 (403)
T PRK05093        200 IPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPIGAMLTTAEIASHFKVG  277 (403)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCCC
Confidence            433    79999999999999999999872 111    111223356765  5569443 33389999987765555432


Q ss_pred             cccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cEEEeCCCCCCCCceEEEEecC
Q psy8850         222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFNF  300 (397)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~  300 (397)
                      ..+      ...+. +....++..++++.+.+  .++.+++.++++++.+.|++ +. .+.+.... ...+.++.+.++.
T Consensus       278 ~~~------~t~~~-~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~-~~~G~~~~~~l~~  346 (403)
T PRK05093        278 THG------STYGG-NPLACAVAEAVFDIINT--PEVLEGVKARRQRFVDGLQK-INQKYGVFSEI-RGMGLLIGAELKP  346 (403)
T ss_pred             CCC------CCCCC-CHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHH-HHhhCCCeEeE-eeCceEEEEEecC
Confidence            221      12233 33445555577777643  45667888889999999987 42 11111111 0113455566542


Q ss_pred             C---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         301 I---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       301 ~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .   ...++...+.  |+.+.++                       +.+.+|++++..++++++++++++|.+++.++
T Consensus       347 ~~~~~~~~~~~~l~~~Gv~v~~~-----------------------g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~  401 (403)
T PRK05093        347 QYKGRARDFLNAAAEEGVMVLVA-----------------------GPDVLRFAPSLVIEEADIDEGLARFEKAVAKV  401 (403)
T ss_pred             cchhHHHHHHHHHHHCCeEEecC-----------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            1   2456666654  7776642                       12789999998889999999999999988653

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.89  E-value=1.5e-20  Score=176.45  Aligned_cols=308  Identities=17%  Similarity=0.185  Sum_probs=193.8

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +..+|.+.+++.+++..... ...      ....+...++.+.+++..+.  +.+++++||++|++.+++... .+ ..+
T Consensus        44 G~~~p~v~~a~~~~~~~~~~-~~~------~~~~~~~~~la~~l~~~~~~--~~~~~~~sG~~a~~~A~~~a~-~~-~g~  112 (377)
T PRK02936         44 GHCHPTVTKAVQEQLDDIWH-VSN------LFTNSLQEEVASLLAENSAG--DLVFFCNSGAEANEAALKLAR-KH-TGK  112 (377)
T ss_pred             CCCCHHHHHHHHHHHHhccc-ccc------ccCCHHHHHHHHHHHhcCCC--CEEEEeCCcHHHHHHHHHHHH-Hh-cCC
Confidence            46789999999999976321 111      01123445556666655443  479999999999999998543 22 233


Q ss_pred             CEEEEcCCCChhh-HHHHHHHhhCCc---------EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc--
Q psy8850          87 KHIITVQTEHKSV-LDSIRKLENDGF---------RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--  154 (397)
Q Consensus        87 ~~vl~~~~~~~s~-~~~~~~~~~~g~---------~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~--  154 (397)
                      ++|++.++.|++. ............         .+..+|.+     |++++++.+.+++++|+++.+++++|...+  
T Consensus       113 ~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~  187 (377)
T PRK02936        113 SKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMNEEVAAVMLEVVQGEGGVIPADP  187 (377)
T ss_pred             CeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCC-----CHHHHHHhccCCeEEEEEecccCCCCCccCCH
Confidence            5677766655544 333332211010         12223322     789999999989999999999999887654  


Q ss_pred             --HHHHHHHHHhcCcEEEEeccccc-Ccc--ccc--cCcccccEEEeccccccC-CCCceEEEEecCCCCccccccccCC
Q psy8850         155 --ILEIGELCRSKGVIFHCDAAQAV-GKI--DIN--IQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       155 --l~~i~~l~~~~gi~livD~a~~~-~~~--~~~--~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                        +++|.++|++||+++|+|++|.. +..  .+.  .....+|+++  ++|.++ +..+|+++.+++..+.+.....   
T Consensus       188 ~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G~~ig~v~~~~~~~~~~~~~~~---  262 (377)
T PRK02936        188 AFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVT--VAKGLGNGIPVGAMIGKKELGTAFGPGSH---  262 (377)
T ss_pred             HHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEE--EcccccCCCccEEEEEcHHHHhhccCCCC---
Confidence              89999999999999999999862 211  111  1223467664  569444 2237888888766555433211   


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEEecCCCh
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFNFIEG  303 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (397)
                         .... ..+...+++..++++.+..  ..+.+++.++.+++++.|++.   ++.+..+..    .+.++++.++. +.
T Consensus       263 ---~~t~-~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~----~g~~~~i~~~~-~~  331 (377)
T PRK02936        263 ---GSTF-GGNPLAMAAAKEVLQVIKQ--PSFLEEVQEKGEYFLQKLQEELEHLECVKNIRG----KGLMIGIECTE-EV  331 (377)
T ss_pred             ---CCCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEee----cceEEEEEecc-hH
Confidence               1122 2455566666678877643  344566666777777776652   233222211    14466777753 24


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ..+...+.  |+.+.++.                       .++|||+++..++++++++++++|.++
T Consensus       332 ~~~~~~l~~~gv~v~~~g-----------------------~~~lRi~p~~~~~~~~i~~~i~~l~~~  376 (377)
T PRK02936        332 APVIEQLREEGLLVLSAG-----------------------PNVIRLLPPLVVTKEELDQAVYLLKKV  376 (377)
T ss_pred             HHHHHHHHHCCeEEecCC-----------------------CCEEEEECCcccCHHHHHHHHHHHHHh
Confidence            55666654  77775431                       278999998889999999999999875

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.89  E-value=1.9e-20  Score=176.70  Aligned_cols=319  Identities=14%  Similarity=0.157  Sum_probs=203.0

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|.|.+++.+++...... ..     + ...+...++.+.|+++.+.  +.+++++||++|++.+++.......  
T Consensus        53 lGh~~p~v~~A~~~~~~~~~~~-~~-----~-~~~~~~~~la~~l~~~~~~--~~v~~~~sGseA~e~Alk~ar~~~~~~  123 (406)
T PRK12381         53 LGHAHPALREALNEQASKFWHT-GN-----G-YTNEPVLRLAKKLIDATFA--DRVFFCNSGAEANEAALKLARKYAHDR  123 (406)
T ss_pred             CCCCCHHHHHHHHHHHhhcccc-cC-----c-cCCHHHHHHHHHHHhhCCC--CeEEEcCCcHHHHHHHHHHHHHHHhhc
Confidence            4456899999999998763211 11     1 1123456788888888754  4899999999999999997543210  


Q ss_pred             --cCCCEEEEcCCCChhhHHHHHHHhhC-Cc---------EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850          84 --KRGKHIITVQTEHKSVLDSIRKLEND-GF---------RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~~~~~~~~~~-g~---------~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~  151 (397)
                        .++.+|+..+..|++.......+... ..         .+..+|.     .|++++++.+.+++++|+++. .+++|-
T Consensus       124 ~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~aaviiEP-v~~~gg  197 (406)
T PRK12381        124 YGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAY-----NDLNSASALIDDQTCAVIVEP-IQGEGG  197 (406)
T ss_pred             CCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCC-----CCHHHHHHhccCCeeEEEEeC-CcCCCC
Confidence              13466777677666665443333110 01         1122222     378999999988899998875 555554


Q ss_pred             -cc-c---HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccc
Q psy8850         152 -IQ-P---ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA  220 (397)
Q Consensus       152 -~~-~---l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~  220 (397)
                       +. |   +++|.++|++||+++|+|++|. +|..    ........+|++  +++| +.|+..+|+++++++..+.+..
T Consensus       198 ~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~--t~sK~l~gG~~ig~~~~~~~~~~~~~~  275 (406)
T PRK12381        198 VIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVL--TTAKALGGGFPIGAMLTTEKCASVMTV  275 (406)
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEE--EehhhhhCCCceEEEEEcHHHHhhcCC
Confidence             33 2   7899999999999999999985 2221    111223357775  5559 5443448999988766555543


Q ss_pred             ccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cEEEeCCCCCCCCceEEEEec
Q psy8850         221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFN  299 (397)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~  299 (397)
                      ...+      ... ..+....++..++++.+.+  .++.++++++.+++.+.|++ +. ...+.... ...+.++.+.++
T Consensus       276 ~~~~------~t~-~~~pl~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~v-rg~Gl~~~~~l~  344 (406)
T PRK12381        276 GTHG------TTY-GGNPLASAVAGKVLELINT--PEMLNGVKQRHDWFVERLNT-INARYGLFSEI-RGLGLLIGCVLN  344 (406)
T ss_pred             CCCC------CCC-CCCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHH-HHhhCCCEEEE-ecCeEEEEEEec
Confidence            2211      122 2344555555577777653  45778888899999998887 42 12111111 111445555554


Q ss_pred             CC---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         300 FI---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       300 ~~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      ..   ....+...+.  |+.+.+.                       +.+.||++++..+++++|++++++|.+++.++.
T Consensus       345 ~~~~~~~~~~~~~l~~~Gv~v~~~-----------------------g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~  401 (406)
T PRK12381        345 AEYAGKAKQISQEAAKAGVMVLIA-----------------------GPNVVRFAPALNISEEEITTGLDRFARACERFV  401 (406)
T ss_pred             CchhhHHHHHHHHHHHCCcEEeeC-----------------------CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHH
Confidence            31   2345555554  7776532                       126899999988999999999999999998765


Q ss_pred             h
Q psy8850         375 E  375 (397)
Q Consensus       375 ~  375 (397)
                      +
T Consensus       402 ~  402 (406)
T PRK12381        402 S  402 (406)
T ss_pred             h
Confidence            4

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.89  E-value=4.7e-20  Score=172.69  Aligned_cols=319  Identities=18%  Similarity=0.196  Sum_probs=199.4

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|++.+++.+++.... ....      ....+...++.+.+.+..+  .+.++|++||++|++.+++.+.....  
T Consensus        50 lGh~~p~v~~a~~~q~~~~~-~~~~------~~~~~~~~~la~~l~~~~~--~~~v~f~~SGseA~e~Aik~ar~~~~~~  120 (395)
T PRK03715         50 LGHCNPGMVEALAAQAEKLI-NPSP------AFYNEPMAKLAGLLTQHSC--FDKVFFANSGAEANEGAIKLARKWGRKH  120 (395)
T ss_pred             CCCCCHHHHHHHHHHHHhcc-cccc------cccCHHHHHHHHHHhhccC--CCEEEEeCCcHHHHHHHHHHHHHHhhcc
Confidence            44568999999999987632 1111      0112334455555555433  34799999999999999997653211  


Q ss_pred             -cCCCEEEEcCC-CChhhHHHHHHHhhCCcEEEEeccCCC----CCCCHHHHHHHhcCCceEEEEecccCccccccc---
Q psy8850          84 -KRGKHIITVQT-EHKSVLDSIRKLENDGFRVTYLKPKNN----GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---  154 (397)
Q Consensus        84 -~~g~~vl~~~~-~~~s~~~~~~~~~~~g~~v~~v~~~~~----~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---  154 (397)
                       ..+.+|+..+. .|.++..++........+....|....    ...|++++++.+.+++++|+++.+++..|.+.|   
T Consensus       121 ~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~  200 (395)
T PRK03715        121 KNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATRE  200 (395)
T ss_pred             CCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHH
Confidence             12245655555 445555554433211111111121111    124789999999888999999999999998877   


Q ss_pred             -HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc
Q psy8850         155 -ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       155 -l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                       ++++.++|++||+++|+|++++ +|..    ..+.....+|++++|  | +.|+.++|.++++++.. .+.+...    
T Consensus       201 ~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~~~i~-~~~~~~~----  273 (395)
T PRK03715        201 FMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLG--KGIGGGVPLAALLAKAEVA-VFEAGDQ----  273 (395)
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeeh--hhhhCCcceEEEEEccccc-cccCCCc----
Confidence             8999999999999999999987 2221    112223368988776  9 65544578888887653 2211111    


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEEEEecCCChH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFNFIEGE  304 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (397)
                        ..+.+ .+...+++..++++.+.+  +++.++..++.++|++.|++ +.   ++..+.    ..+.++.+.+......
T Consensus       274 --~~T~~-g~pl~~aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~~-l~~~~~i~~vr----G~Glm~~i~l~~~~~~  343 (395)
T PRK03715        274 --GGTYN-GNPLMTAVGVAVISQLLA--PGFLEGVRARGEYLKEKLLE-LSEERGLEGER----GEGLLRALLLGKDIGP  343 (395)
T ss_pred             --CCCCC-CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-HhhcCCcCeEE----cceeEEEEEecCchHH
Confidence              11222 234556666688888764  56778888888888888876 31   221111    1245666666542223


Q ss_pred             HHHHHhC-----CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK-----DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       305 ~~~~~l~-----~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .+...+.     |+.+...                       ..+.|||+++..+|++|||+++++|+++++++
T Consensus       344 ~~~~~~~~~~~~Gi~~~~~-----------------------~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~  394 (395)
T PRK03715        344 QIVEKARDMQPDGLLLNAP-----------------------RPNLLRFMPALNVTTEEIDQMIAMLRSVLDKL  394 (395)
T ss_pred             HHHHHHHhccCCCEEEeec-----------------------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence            3332222     5554321                       12789999999999999999999999998764

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.89  E-value=2e-20  Score=177.93  Aligned_cols=327  Identities=18%  Similarity=0.139  Sum_probs=200.4

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +..+|.|.+++.+++..... ...     +....+...++.+.|+++++-..+.++|++||++|++.+++. .+.++++ 
T Consensus        58 Gh~~p~v~~a~~~q~~~~~~-~~~-----~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~Alkl-Ar~~tgr-  129 (433)
T PRK08117         58 GHRHPKVVQAIKEQADKLMH-GPS-----GVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKL-AKHVTKR-  129 (433)
T ss_pred             CCCCHHHHHHHHHHHHhccC-ccc-----cccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHH-HHHhcCC-
Confidence            45789999999999876321 110     011234567888899998843345799999999999999994 4444444 


Q ss_pred             CEEEEcCC-CChhhHHHHHHHhh-----CC-----cEEEEeccCCCCC------------CCHHHHHHHhc-----CCce
Q psy8850          87 KHIITVQT-EHKSVLDSIRKLEN-----DG-----FRVTYLKPKNNGL------------ITLSQLEEKIC-----SDTI  138 (397)
Q Consensus        87 ~~vl~~~~-~~~s~~~~~~~~~~-----~g-----~~v~~v~~~~~~~------------~d~~~l~~~i~-----~~~~  138 (397)
                      .+|+.... .|..+..+......     .+     ..+..+|......            -+++++++.++     +++.
T Consensus       130 ~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a  209 (433)
T PRK08117        130 PYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVA  209 (433)
T ss_pred             CeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEE
Confidence            45555554 44444444322110     00     1123444432111            14566777654     3578


Q ss_pred             EEEEecccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc--cc--ccCcccccEEEecccc-ccCCCCceEE
Q psy8850         139 LVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI--DI--NIQNYKVDLMSFSAHK-IYGPKGIGAL  208 (397)
Q Consensus       139 ~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~--~~--~~~~~~~d~~~~s~~K-~~g~~g~g~~  208 (397)
                      +|+++.+....|.+.|    ++++.++|++||+++|+|++|+. |..  .+  ......+|++  +++| +.++..+|++
T Consensus       210 avi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~--t~sK~lg~G~pigav  287 (433)
T PRK08117        210 AVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIM--TIAKGIASGLPLSAV  287 (433)
T ss_pred             EEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEe--ehhhhccCCCcceeE
Confidence            9999999999999988    89999999999999999999983 111  11  1112346765  5559 5443347888


Q ss_pred             EEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cEEEeCCCC
Q psy8850         209 YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMN  287 (397)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~  287 (397)
                      +.+++....+.....+      ...+ .+...+++..++++.+.+  +.+.+++.++.+++++.|++ +. ...+... .
T Consensus       288 ~~~~~i~~~~~~~~~~------~T~~-~np~~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~-l~~~~~~~~~-v  356 (433)
T PRK08117        288 VASKELMEQWPLGSHG------TTFG-GNPVACAAALATLEVIKE--EKLLDNANEMGAYALERLEV-LKEKHPVIGD-V  356 (433)
T ss_pred             EEcHHHHhhccCCCCC------CCCC-cCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-HHhcCCceee-e
Confidence            8887655444322111      1222 345556666688887754  35667777778888887776 32 1111111 1


Q ss_pred             CCCCceEEEEecCCC-------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         288 NRIPHNLNISFNFIE-------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       288 ~~~~~~~~~~~~~~~-------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      ...+.++.+.|...+       ...+...+.  |+.+.+.                 |    ...+.+|++++..+|+++
T Consensus       357 rg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----------------g----~~~~~lRl~p~~~~t~~~  415 (433)
T PRK08117        357 RGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLC-----------------G----NAGNVLRMIPPLTVTKEE  415 (433)
T ss_pred             ecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeec-----------------C----CCCCEEEEeCCccCCHHH
Confidence            122345555663211       123333333  6655431                 0    013789999998999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy8850         359 IDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       359 i~~~~~~l~~~~~~~~~  375 (397)
                      |++++++|.++++++.+
T Consensus       416 i~~~~~~l~~~l~~~~~  432 (433)
T PRK08117        416 IDEGLDILDEALTEYEA  432 (433)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999987643

>PLN02624 ornithine-delta-aminotransferase

Probab=99.88  E-value=2.3e-20  Score=178.54  Aligned_cols=315  Identities=14%  Similarity=0.104  Sum_probs=200.0

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-cc-
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-KK-   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-~~-   84 (397)
                      +..+|.|.+++.+++.... ...+      ....+...++.+.|+++++.  +.++|++||++|++.+++....+. .+ 
T Consensus        90 Gh~~p~v~~ai~~ql~~~~-~~~~------~~~~~~~~~la~~L~~~~~~--~~~~f~~SGseA~e~AlklAr~~~~~~~  160 (474)
T PLN02624         90 GHCHPKIIKALTEQAEKLT-LSSR------AFYNDKFPEFAEYLTSMFGY--DMVLPMNTGAEGVETAIKLARKWGYEKK  160 (474)
T ss_pred             CCCCHHHHHHHHHHHHhcC-Cccc------ccCCHHHHHHHHHHHhhcCC--CeEEEeCChHHHHHHHHHHHHHHHHhhc
Confidence            3568999999999998732 1111      11134567788899998864  489999999999999999544321 11 


Q ss_pred             ----CCCEEEEcCCCChhhHHHHHHHhh-CC---------cEEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccC
Q psy8850          85 ----RGKHIITVQTEHKSVLDSIRKLEN-DG---------FRVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNN  147 (397)
Q Consensus        85 ----~g~~vl~~~~~~~s~~~~~~~~~~-~g---------~~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~  147 (397)
                          .+.+|+.....|++.......+.. ..         ..+..+|.+     |++.+++.++   +++++|+++.+++
T Consensus       161 g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~iaaiiiEpv~~  235 (474)
T PLN02624        161 GIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFG-----DLDALEKIFEEDGDRIAAFLFEPIQG  235 (474)
T ss_pred             CCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCC-----CHHHHHHHHHhCCCCEEEEEECCccC
Confidence                123566666666555333222211 00         112333332     7889998885   4688999999999


Q ss_pred             ccccccc----HHHHHHHHHhcCcEEEEecccc-cCc----cccccCcccccEEEecccc-ccCC-CCceEEEEecCCCC
Q psy8850         148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRT  216 (397)
Q Consensus       148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~----~~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~  216 (397)
                      ++|.+.|    +++|.++|++||+++|+|++|+ +|.    ...+.....+|++++|  | +.++ ..+|+++.+++...
T Consensus       236 ~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~pigav~~~~~i~~  313 (474)
T PLN02624        236 EAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILG--KALGGGVIPVSAVLADKDVML  313 (474)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEec--ccccCCCCcceeeeecHHHHh
Confidence            9999988    8999999999999999999997 321    1222234467888876  9 5443 34788888765544


Q ss_pred             ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCc-EEEeCCCCCCCCc
Q psy8850         217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEE-IYINGDMNNRIPH  292 (397)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~  292 (397)
                      .+.+...+      ...+ .+....++..++++.+.+  .++.++..++.+++++.|.+.   ++. +..+..    .+.
T Consensus       314 ~~~~~~~~------~T~~-g~pl~~aaa~aaLe~l~~--~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg----~G~  380 (474)
T PLN02624        314 CIKPGEHG------STFG-GNPLASAVAMAALQVVQD--EKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRG----RGL  380 (474)
T ss_pred             HhccCCcC------CCCC-CCHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe----eEE
Confidence            43322211      1223 344555555578877654  245556666666776666551   221 221211    133


Q ss_pred             eEEEEecCC-----ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850         293 NLNISFNFI-----EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL  365 (397)
Q Consensus       293 ~~~~~~~~~-----~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  365 (397)
                      ++.+.+...     ...++...|.  ||.+.++.                       ++.|||+++..+++++|++++++
T Consensus       381 ~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~-----------------------~~~lR~~p~l~~t~e~id~~l~~  437 (474)
T PLN02624        381 LNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTH-----------------------DTIIRLAPPLSISEDELQECSKA  437 (474)
T ss_pred             EEEEEecCCCcChHHHHHHHHHHHhCCeEEecCC-----------------------CCEEEEECCccCCHHHHHHHHHH
Confidence            444455421     1235555554  77776531                       37899999988999999999999


Q ss_pred             HHHHHHHH
Q psy8850         366 LKMKVKKL  373 (397)
Q Consensus       366 l~~~~~~~  373 (397)
                      |+++++.-
T Consensus       438 L~~~l~~~  445 (474)
T PLN02624        438 LSDVLEHD  445 (474)
T ss_pred             HHHHHHHH
Confidence            99887543

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.88  E-value=4.2e-20  Score=174.55  Aligned_cols=312  Identities=17%  Similarity=0.189  Sum_probs=207.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-----
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-----   82 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-----   82 (397)
                      ..+|+|.+++.+.+.... ...+   .   ...+...++.+.|+++++.+  .+++++||++|++.+++.+....     
T Consensus        53 h~~p~v~~a~~~~~~~~~-~~~~---~---~~~~~~~~l~~~l~~~~~~~--~~~~~~SGs~A~e~ai~~a~~~~~~~~~  123 (401)
T TIGR01885        53 HCHPKIVKALTEQAQKLT-LSSR---A---FYNDVFGEFAEYVTKLFGYD--KVLPMNTGAEAVETAIKLARKWGYKVKG  123 (401)
T ss_pred             CCCHHHHHHHHHHHHhcc-cccc---c---cCCHHHHHHHHHHHhhcCCC--EEEEeCccHHHHHHHHHHHHHHhhhhcC
Confidence            458999999999987622 1111   1   12356788999999999854  79999999999999999765321     


Q ss_pred             -ccCCCEEEEcCCCChh-hHHHHHHHhh------CC---cEEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCc
Q psy8850          83 -KKRGKHIITVQTEHKS-VLDSIRKLEN------DG---FRVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNE  148 (397)
Q Consensus        83 -~~~g~~vl~~~~~~~s-~~~~~~~~~~------~g---~~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~  148 (397)
                       ...+++|+.....|++ +..++.....      .+   ..+..++.+     |++++++++.   ++..+|+++.++++
T Consensus       124 ~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~avi~E~v~~~  198 (401)
T TIGR01885       124 IPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHGPNVCAFIVEPIQGE  198 (401)
T ss_pred             CCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcCCCEEEEEEeCccCC
Confidence             1235678878877664 4554443211      01   123334333     7899998885   46778899999999


Q ss_pred             cccccc----HHHHHHHHHhcCcEEEEecccc-cCcc--c--cccCcccccEEEecccc-ccCC-CCceEEEEecCCCCc
Q psy8850         149 IGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI--D--INIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTR  217 (397)
Q Consensus       149 tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~--~--~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~  217 (397)
                      +|.+.|    +++|.++|++||+++|+|++|. +|..  .  .+...+.+|++++|  | +.++ ..+|+++.+++....
T Consensus       199 ~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig~v~~~~~i~~~  276 (401)
T TIGR01885       199 AGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYPVSAVLADDDVMLT  276 (401)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEee--ccccCCCCCcEEEEEcHHHHhh
Confidence            999988    8999999999999999999975 2211  1  22233467888766  9 5432 247888888765554


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEE
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS  297 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  297 (397)
                      +.....+      ...+. +.....+..++++.+.+  ..+.++..++.+++++.|++ +. ..++... ...+.++.+.
T Consensus       277 ~~~~~~~------~t~~~-~p~~~~aa~a~L~~i~~--~~l~~~~~~~~~~~~~~L~~-l~-~~~~~~~-~g~g~~~~i~  344 (401)
T TIGR01885       277 IKPGEHG------STYGG-NPLACAVAVAALEVLEE--EKLAENAEKLGEIFRDQLKK-LP-KPIITEV-RGRGLLNAIV  344 (401)
T ss_pred             ccCCCCC------CCCCC-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHh-cc-CCceeEE-eecCeeEEEE
Confidence            4332111      12222 34555555678887765  24567888889999999998 53 1222111 1124455555


Q ss_pred             ecCC----ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         298 FNFI----EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       298 ~~~~----~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ++..    +..++...|.  ||.+.++                       ..+.+||+++..+++++|++++++|++++
T Consensus       345 ~~~~~~~~~~~~l~~~l~~~Gv~v~~~-----------------------~~~~lRi~p~l~~t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       345 IDESKTGRTAWDLCLKLKEKGLLAKPT-----------------------HGNIIRLAPPLVITEEQLDEGLEIIKKVI  400 (401)
T ss_pred             eccCcchhHHHHHHHHHHhCCEEEEec-----------------------CCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence            5432    3455666664  7776543                       12789999998899999999999998875

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.88  E-value=2.6e-20  Score=176.74  Aligned_cols=326  Identities=16%  Similarity=0.123  Sum_probs=209.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc-
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK-   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~-   84 (397)
                      .+..+|.|.+++.+++......      . .+...+...++.+.|++++....+.++|++||++|++.+++... .+++ 
T Consensus        96 lGH~~p~v~~Ai~~ql~~l~~~------~-~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr-~~t~~  167 (459)
T PRK11522         96 VGHRNPVVVSAVQNQLAKQPLH------S-QELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAK-AYQSP  167 (459)
T ss_pred             cCCCCHHHHHHHHHHHhhCccc------c-cccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHH-HHhcc
Confidence            3467899999999999763211      1 11123456677888888876544579999999999999999654 3332 


Q ss_pred             C-CCEEEEcCCCChhhHHHHHHHh-hCCcE---------EEEeccCCCCCCCHHHHHHHhc------CCceEEEEecccC
Q psy8850          85 R-GKHIITVQTEHKSVLDSIRKLE-NDGFR---------VTYLKPKNNGLITLSQLEEKIC------SDTILVSVMLVNN  147 (397)
Q Consensus        85 ~-g~~vl~~~~~~~s~~~~~~~~~-~~g~~---------v~~v~~~~~~~~d~~~l~~~i~------~~~~~v~~~~~~~  147 (397)
                      + +.+|+....+|++......... ....+         +..+|.     .|.+++++++.      +++.+|+++.++.
T Consensus       168 ~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~~~~iAavIvEpv~g  242 (459)
T PRK11522        168 RGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-----GNIEAMRTALSECKKTGDDVAAVILEPIQG  242 (459)
T ss_pred             CCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-----CCHHHHHHHHHHhhccCCcEEEEEEecccC
Confidence            2 3567777766666554333221 11111         122222     26788888775      3578999999999


Q ss_pred             ccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCCCC
Q psy8850         148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRT  216 (397)
Q Consensus       148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~  216 (397)
                      ..|.+.|    ++++.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+ .++|.++++++...
T Consensus       243 ~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggG~~Pigav~~~~~i~~  320 (459)
T PRK11522        243 EGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLA--KALGGGVMPIGATIATEEVFS  320 (459)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEec--hhhhCCCccceeEEEcHHHHH
Confidence            9999887    8999999999999999999985 3221    112223368988766  9 5543 35788888866544


Q ss_pred             ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cEE-EeCCCCCCCCceE
Q psy8850         217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE-EIY-INGDMNNRIPHNL  294 (397)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~-~~~~~~~~~~~~~  294 (397)
                      .+...    ......+.+. |...+++..++++.+.+  +.+.++..++.++|++.|++ +. ... ++... ...+.++
T Consensus       321 ~~~~~----~~~~~~T~~g-np~~~Aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~-l~~~~~~~i~~V-rG~Gl~~  391 (459)
T PRK11522        321 VLFDN----PFLHTTTFGG-NPLACAAALATINVLLE--QNLPAQAEQKGDYLLDGFRQ-LAREYPDLVQEA-RGKGMLM  391 (459)
T ss_pred             HhccC----CcccCCCCCC-CHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHH-HHHhCCCceeeE-EeceeEE
Confidence            33210    0001112222 45555666688888765  35778888888888888877 31 111 11110 0114556


Q ss_pred             EEEecCCC-hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         295 NISFNFIE-GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       295 ~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      -+.+...+ ...+...+.  |+.+.+..                     ...+.+|+.++..++++|+|+++++|.++++
T Consensus       392 giel~~~~~~~~i~~~l~~~Gvl~~~~~---------------------~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~  450 (459)
T PRK11522        392 AIEFVDNEIGYNFASEMFRQRVLVAGTL---------------------NNAKTIRIEPPLTLTIEQCEQVLKAARKALA  450 (459)
T ss_pred             EEEecCchHHHHHHHHHHHCCeEEEecC---------------------CCCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence            66665322 344555554  77765321                     0137899999999999999999999999998


Q ss_pred             HHHhc
Q psy8850         372 KLREL  376 (397)
Q Consensus       372 ~~~~~  376 (397)
                      ++.+.
T Consensus       451 ~~~~~  455 (459)
T PRK11522        451 AMRVS  455 (459)
T ss_pred             HHHHh
Confidence            87653

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.88  E-value=5.6e-20  Score=174.25  Aligned_cols=327  Identities=15%  Similarity=0.134  Sum_probs=201.7

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|.|.+++.+++..... ..     ..+...+...++.+.|++..+..-+.++|++||++|++.+++.. +.++++
T Consensus        55 lGh~~p~v~~Ai~~ql~~~~~-~~-----~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklA-r~~tgr  127 (443)
T PRK08360         55 VGHNNPRVVKAIKEQTDKLIH-YT-----PIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFA-RAYTKR  127 (443)
T ss_pred             cCCCCHHHHHHHHHHHHhccC-cc-----ccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHH-HHhcCC
Confidence            446789999999999986321 11     11111334567788888887654457999999999999999954 445444


Q ss_pred             CCEEEEcCCCChhh-HHHHHHHhhC-------C--cEEEEeccCCCCC------------CCHHHHHHHhc-----CCce
Q psy8850          86 GKHIITVQTEHKSV-LDSIRKLEND-------G--FRVTYLKPKNNGL------------ITLSQLEEKIC-----SDTI  138 (397)
Q Consensus        86 g~~vl~~~~~~~s~-~~~~~~~~~~-------g--~~v~~v~~~~~~~------------~d~~~l~~~i~-----~~~~  138 (397)
                       .+|+.....|++. ..+.......       +  ..+..+|.+....            .+++.+++++.     ++++
T Consensus       128 -~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iA  206 (443)
T PRK08360        128 -RKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVA  206 (443)
T ss_pred             -CeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeE
Confidence             5666655555444 4443322100       0  1234444432110            12445666663     4689


Q ss_pred             EEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCCCCceEE
Q psy8850         139 LVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGPKGIGAL  208 (397)
Q Consensus       139 ~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~  208 (397)
                      +|+++..++++|.+.|    ++++.++|++||+++|+|++|+ ++...    .......+|++++  +| +.++..+|++
T Consensus       207 Avi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitl--sK~l~~G~pigav  284 (443)
T PRK08360        207 ALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITL--GKPLGGGLPISAT  284 (443)
T ss_pred             EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEe--cccccCCceeEEE
Confidence            9999999999998877    7899999999999999999987 32211    1122345788766  59 4433347999


Q ss_pred             EEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC
Q psy8850         209 YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN  288 (397)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  288 (397)
                      +++++....+....      ..+..+.++ ....+..++++.+.+  .++.++..++.++|++.|++......+..+. .
T Consensus       285 ~~~~~i~~~~~~~~------~~~T~~~~p-~~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v-r  354 (443)
T PRK08360        285 IGRAEIMDSLPPLA------HAFTLSGNP-VASAAALAVIEEIEE--KNLLKRAEKLGNYTKKRLEEMKKKHELIGDV-R  354 (443)
T ss_pred             EEcHHHHhhhcCCC------CCCCCCcCH-HHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHhCCCeeee-e
Confidence            98876555543221      112233333 445555578887765  2466777777777777776511111122111 1


Q ss_pred             CCCceEEEEecCCC---------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHH
Q psy8850         289 RIPHNLNISFNFIE---------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK  357 (397)
Q Consensus       289 ~~~~~~~~~~~~~~---------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~  357 (397)
                      ..+.++-+.|....         ...+...+.  |+.+.+.                       ..+.+|++++..++++
T Consensus       355 g~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~-----------------------~~~~lr~~P~l~~t~~  411 (443)
T PRK08360        355 GIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF-----------------------SGNVLRIQPPLTIEKE  411 (443)
T ss_pred             ccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec-----------------------CCCEEEEeCCCCCCHH
Confidence            12445555553211         123444443  6665421                       1278999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy8850         358 EIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       358 ~i~~~~~~l~~~~~~~~~  375 (397)
                      |||++++++.++++++++
T Consensus       412 ~id~~~~~l~~~l~~~~~  429 (443)
T PRK08360        412 VLDEGLDILEEAIEDVEE  429 (443)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999988865

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.88  E-value=1.8e-19  Score=168.85  Aligned_cols=309  Identities=19%  Similarity=0.236  Sum_probs=191.1

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      +. +|++++++.+++.....++..           ...++++.+++.+...++ .+++++||++|+..+++.... + .+
T Consensus        44 G~-~p~v~~a~~~~~~~~~~~~~~-----------~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~-~-~~  109 (375)
T PRK04260         44 GF-HPQVQQALQKQAGLIWHSPNL-----------YLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARK-A-TG  109 (375)
T ss_pred             CC-CHHHHHHHHHHHHhcCcccCc-----------cCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHH-h-cC
Confidence            45 788999999998763322211           223455666665543334 368999999999999886542 2 23


Q ss_pred             CCEEEEcCCCC-hhhHHHHHHHhhC------CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc----
Q psy8850          86 GKHIITVQTEH-KSVLDSIRKLEND------GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP----  154 (397)
Q Consensus        86 g~~vl~~~~~~-~s~~~~~~~~~~~------g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~----  154 (397)
                      +++|++.+..| .++..+.......      +..+..++..  -..|++++++++.+++.+|+++.+++++|.+.+    
T Consensus       110 ~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~  187 (375)
T PRK04260        110 KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA--IFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKDF  187 (375)
T ss_pred             CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe--CCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHH
Confidence            46676665554 4454444332110      1111111110  124899999998888899999999999998866    


Q ss_pred             HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccccccC-CCCceEEEEecCCCCccccccccCCcc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHE  228 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~  228 (397)
                      ++++.++|+++|+++|+|++|. ++..    ........+|++  |++|.++ +..+|+++++++....+......    
T Consensus       188 l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~----  261 (375)
T PRK04260        188 VKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKSSLGGAFGYGSHG----  261 (375)
T ss_pred             HHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCCCCCC----
Confidence            7999999999999999999986 2211    111223467866  5669443 33479999987655544322111    


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL  306 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (397)
                        ... ..+.....+..++++.+..  .+++..+....+++.+.+.+.+ .+.+..+..    .+.++++.++ .+..++
T Consensus       262 --~t~-~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~----~g~~~~~~~~-~~~~~~  332 (375)
T PRK04260        262 --STF-GGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQD-KETVTTVRG----LGYMIGIETT-ADLSQL  332 (375)
T ss_pred             --CCC-CcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh-CCCeeEEec----cceEEEEEec-CcHHHH
Confidence              112 2234455555567766543  2344444444555555555544 332222211    2556667764 345677


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      .+.+.  |+.+.+.                       ..+.+|++++..++++++++++++|+++
T Consensus       333 ~~~l~~~Gi~v~~~-----------------------~~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        333 VEAARDKGLIVLTA-----------------------GTNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             HHHHHhCCCEEecC-----------------------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence            77765  7877543                       1277999999889999999999999875

>KOG1368|consensus

Probab=99.88  E-value=5.7e-21  Score=161.10  Aligned_cols=315  Identities=19%  Similarity=0.223  Sum_probs=215.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+.|..+++++|.++.....      .|    ...+...++++..++++|-+  ..+|++|||.++.++++.-+.   ++
T Consensus        31 vT~PTdeMr~am~eA~vgDd------Vy----GeD~tt~rLE~~vA~l~GKE--AgLFv~SGTmgNllaIm~Hc~---~r   95 (384)
T KOG1368|consen   31 VTVPTDEMRRAMAEASVGDD------VY----GEDPTTNRLEQRVAELFGKE--AGLFVPSGTMGNLLAIMVHCH---QR   95 (384)
T ss_pred             ccCChHHHHHHHhhcccCcc------cc----cCCccHHHHHHHHHHHhCcc--ceeeecccccccHHHHHHHhc---CC
Confidence            34567788888887764311      11    12335678899999999966  689999999999999887764   68


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC--------CceEEEEecccCccc-ccccHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--------DTILVSVMLVNNEIG-VIQPIL  156 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--------~~~~v~~~~~~~~tG-~~~~l~  156 (397)
                      |.+|++.+.+|.-.........-.|+.++.+...++|.++++++|+++..        -|++|++++.++.+| .++|++
T Consensus        96 g~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle  175 (384)
T KOG1368|consen   96 GSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLE  175 (384)
T ss_pred             CceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHH
Confidence            99999999988766655444333488899999889999999999999962        378999999999887 889965


Q ss_pred             ---HHHHHHHhcCcEEEEeccccc-----CccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc--cccC
Q psy8850         157 ---EIGELCRSKGVIFHCDAAQAV-----GKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ--IHGG  225 (397)
Q Consensus       157 ---~i~~l~~~~gi~livD~a~~~-----~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~--~~~~  225 (397)
                         ++.++|+++|+.+++|++--+     ..++..--.-.+|.+...++| +..|.| ++++++++.+.+.+.+  ..||
T Consensus       176 ~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVG-SViVG~k~FI~kA~~~RKalGG  254 (384)
T KOG1368|consen  176 ELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVG-SVIVGSKDFIDKARHFRKALGG  254 (384)
T ss_pred             HHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcc-cEEEccHHHHHHHHHHHHHhcC
Confidence               577889999999999988432     112222111157888888889 777876 8888888776654322  1221


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEE--EecCCCh
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI--SFNFIEG  303 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  303 (397)
                               +.--.++++. +++--+.+-++ ..+.-..++..|.+.+.. .+++.+..+...  ..++.+  .-+..+.
T Consensus       255 ---------GmRQsGvLaa-aaLval~~~~~-~L~~dHk~A~~lAe~~~~-~~~i~v~v~a~e--tNiv~~~l~q~~~~~  320 (384)
T KOG1368|consen  255 ---------GMRQSGVLAA-AALVALDENVP-LLRADHKRAKELAEYINT-PEEIRVEVPAVE--TNIVNMVLCQARLTA  320 (384)
T ss_pred             ---------chhHHHHHHH-HHHHHhhcchH-HHHHHHHHHHHHHHHhcc-ccceeeecchhh--cceeeeecccccCCH
Confidence                     2222223322 12221222233 334445567777777776 666776654221  223332  3356788


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH-HHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK-MKVKKL  373 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~-~~~~~~  373 (397)
                      ..+.+.+.  |+.+..|..                       ..+|+.+....+++++|.+.+.+. .++.++
T Consensus       321 ~~l~~~~~k~gi~lm~~~s-----------------------~r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q~  370 (384)
T KOG1368|consen  321 EELCKFLEKNGILLMGGAS-----------------------RRIRIVLHHQVTDEDVEYVKSVLSKKFLKQL  370 (384)
T ss_pred             HHHHHHHHHCCeEEeeccc-----------------------cceEEEEEEecCHHHHHHHHHHHHHHHHhhc
Confidence            88888887  777766521                       458999999999999999999995 444443

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.88  E-value=5.1e-19  Score=170.68  Aligned_cols=336  Identities=17%  Similarity=0.107  Sum_probs=226.3

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--------cC------------------
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--------KR------------------   85 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--------~~------------------   85 (397)
                      .+..++.......++-+++++++|.+.....+|+|||+|+..++...+....        ++                  
T Consensus       114 ~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~  193 (608)
T TIGR03811       114 AYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKE  193 (608)
T ss_pred             ccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccc
Confidence            4445666778888999999999999877788999999999988876553210        00                  


Q ss_pred             ----------------------------CCEEEEcCCCChhhHHHHHHHhhCCc---EEEEeccCCCCCCCHHHHHHHhc
Q psy8850          86 ----------------------------GKHIITVQTEHKSVLDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKIC  134 (397)
Q Consensus        86 ----------------------------g~~vl~~~~~~~s~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~i~  134 (397)
                                                  --+|+++...|.|..+++..+   |+   +++.||+++++.||+++|+++|.
T Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il---GlG~~~vv~VpvD~~~rmd~~~L~~~I~  270 (608)
T TIGR03811       194 IMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII---GIGLDQVIPVPVDSNYRMDINELEKIIR  270 (608)
T ss_pred             ccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc---CCCcccEEEeecCCCCcCCHHHHHHHHH
Confidence                                        016899999999999999988   65   69999999999999999999986


Q ss_pred             C------CceEEEEecccCcccccccHHHHHHHH---HhcCc--EEEEecccccCc---c--------ccc---------
Q psy8850         135 S------DTILVSVMLVNNEIGVIQPILEIGELC---RSKGV--IFHCDAAQAVGK---I--------DIN---------  183 (397)
Q Consensus       135 ~------~~~~v~~~~~~~~tG~~~~l~~i~~l~---~~~gi--~livD~a~~~~~---~--------~~~---------  183 (397)
                      +      .+-+|+.+..++.+|.+.|+++|+++|   +++|+  ++|||+|++...   .        |++         
T Consensus       271 ~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~  350 (608)
T TIGR03811       271 KLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEY  350 (608)
T ss_pred             HHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccc
Confidence            4      245788889999999999999999999   67888  699999999642   1        100         


Q ss_pred             -----------------cCc-ccccEEEecccc-ccCCCCceEEEEecCCCCcc----cccccc-C-Ccc---c-cccCC
Q psy8850         184 -----------------IQN-YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI----EAQIHG-G-GHE---Y-GLRSG  234 (397)
Q Consensus       184 -----------------~~~-~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~----~~~~~~-~-~~~---~-~~~~~  234 (397)
                                       +.. -.+|+++..+|| ++.|.++|++++++......    .+++.. + ...   . ....|
T Consensus       351 ~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~leg  430 (608)
T TIGR03811       351 GVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEG  430 (608)
T ss_pred             cccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceec
Confidence                             001 168999999999 67788999999997632111    122211 0 000   0 01122


Q ss_pred             CCchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh-----cCcEEE--eCCCCCCCCceEEEEec--CCC
Q psy8850         235 TLATHQIVGMGEAFRLA---RIEMKEELKRILFLQKRLYNGLMES-----IEEIYI--NGDMNNRIPHNLNISFN--FIE  302 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~---~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~--~~~~~~~~~~~~~~~~~--~~~  302 (397)
                      +.+-...++++.+++.+   .+++.++.++..++++++.+.|++.     -+.+.+  ..++.   ..+++|.+.  +.+
T Consensus       431 SR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pd---lniV~Fr~~~~g~~  507 (608)
T TIGR03811       431 SKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPD---FNMVDYVFNEKGND  507 (608)
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCC---cceEEEEEecCCCc
Confidence            22234466677777775   5689999999999999999999872     133444  34333   456666664  221


Q ss_pred             ----hHHHHHHhC-CcEecc------------cCccCC-CCCChhhHHHhhCCCcc-----ccCceEEEeeC--CCCCHH
Q psy8850         303 ----GESLLMAIK-DIAVSS------------GSACTS-ASLEPSYVLRALGCNDE-----LAHSSIRFTIG--RFTTEK  357 (397)
Q Consensus       303 ----~~~~~~~l~-~i~~~~------------g~~~~~-~~~~~~~~~~~~g~~~~-----~~~~~iRi~~~--~~~~~~  357 (397)
                          .+++.+++. ...+..            ..+... -...+....+.+|+...     ..-..+|-++-  +.++++
T Consensus       508 ~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~  587 (608)
T TIGR03811       508 DLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKE  587 (608)
T ss_pred             cHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEecCcccCChh
Confidence                233333332 122221            111111 01122346777787743     23356888753  335678


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8850         358 EIDFTIKLLKMKVKKL  373 (397)
Q Consensus       358 ~i~~~~~~l~~~~~~~  373 (397)
                      .++.+.+.|++.+.+.
T Consensus       588 ~~~~~~~~~~~~~~~~  603 (608)
T TIGR03811       588 NFDEYAPKIKAAMQEK  603 (608)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            8999999988887554

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.88  E-value=9e-20  Score=174.70  Aligned_cols=334  Identities=18%  Similarity=0.146  Sum_probs=202.5

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCChhHHHHHHHHHhHhhh--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAHFY--   82 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~i~~~~g~t~a~~~~l~~l~~~~--   82 (397)
                      .+..+|.|.+++.+++..... .+. ..  + ...+...++.+.|.+++. .+.+.++|++||++|++.+++......  
T Consensus       103 lGh~hp~v~~Av~~ql~~~~~-~~~-~~--~-~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~  177 (504)
T PLN02760        103 LGGSEPRLVAAATEQLNKLPF-YHS-FW--N-RTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNA  177 (504)
T ss_pred             cCCCCHHHHHHHHHHHhhccc-eec-cc--c-cCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHh
Confidence            346789999999999976221 000 00  0 123455677788777753 333569999999999999999764321  


Q ss_pred             -cc-CCCEEEEcCCCChhh-HHHHHHHhh------CCc---EEEEeccCCCCC-------------CCHHHHHHHhc---
Q psy8850          83 -KK-RGKHIITVQTEHKSV-LDSIRKLEN------DGF---RVTYLKPKNNGL-------------ITLSQLEEKIC---  134 (397)
Q Consensus        83 -~~-~g~~vl~~~~~~~s~-~~~~~~~~~------~g~---~v~~v~~~~~~~-------------~d~~~l~~~i~---  134 (397)
                       .. .+.+|+..+..|++. ..++.....      .+.   .+..++.+....             ...+++++++.   
T Consensus       178 ~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~  257 (504)
T PLN02760        178 LGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEG  257 (504)
T ss_pred             cCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence             11 134566555555444 433332210      010   122233221000             01245777663   


Q ss_pred             -CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEeccc-ccCccc----cccCcccccEEEecccc-ccCC-
Q psy8850         135 -SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQ-AVGKID----INIQNYKVDLMSFSAHK-IYGP-  202 (397)
Q Consensus       135 -~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~-~~~~~~----~~~~~~~~d~~~~s~~K-~~g~-  202 (397)
                       +++.+|+++.+....|.+.|    ++++.++|++||+++|+|+++ ++|...    .+.....+|+++++  | +.|+ 
T Consensus       258 ~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlg--K~lggG~  335 (504)
T PLN02760        258 PETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLA--KALSSAY  335 (504)
T ss_pred             CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEec--ccccCCc
Confidence             35789999999999999888    899999999999999999999 454431    12223468988877  9 5443 


Q ss_pred             CCceEEEEecCCCCcccccccc-CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEE
Q psy8850         203 KGIGALYIRRNPRTRIEAQIHG-GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY  281 (397)
Q Consensus       203 ~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  281 (397)
                      .++|.++++++..+.+...... +.....++.+. +...+++..++|+.+.+  +++.++.+++.++|++.|++ +....
T Consensus       336 ~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~g-nPl~~Aaala~Le~i~~--~~l~~~~~~~g~~l~~~L~~-l~~~~  411 (504)
T PLN02760        336 MPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSG-HPVSCAVALEALKIYKE--RNIPEHVNKIAPRFQDGIKA-FSGSP  411 (504)
T ss_pred             cccceEeecHHHHhhhhcccccccCcccCCCCCC-CHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-HhcCC
Confidence            2478888887766555321100 01112233444 44555555588888766  36788888888888888877 43222


Q ss_pred             EeCCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         282 INGDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      ++.. -...+.++-+.+....            ...+...+.  |+.+.+.                        ++.+|
T Consensus       412 ~v~~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~------------------------g~~lr  466 (504)
T PLN02760        412 IIGE-IRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA------------------------GDNIM  466 (504)
T ss_pred             Ceee-EEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec------------------------CCEEE
Confidence            2211 1112345555553211            122333333  6665432                        25789


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ++++..+|++|||+++++|.+++.++.+
T Consensus       467 l~Ppl~it~eeid~~~~~l~~al~~~~~  494 (504)
T PLN02760        467 MSPPLIITPEEVDELISIYGKALKATEE  494 (504)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999877644

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.87  E-value=3.9e-21  Score=159.58  Aligned_cols=162  Identities=23%  Similarity=0.324  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhH-HHHHHHhhCCcEEEEeccCCC
Q psy8850          43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVL-DSIRKLENDGFRVTYLKPKNN  121 (397)
Q Consensus        43 ~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~-~~~~~~~~~g~~v~~v~~~~~  121 (397)
                      +.++++.++++++.+.+++.+++|+|+|+.+++.++.    +++++|+++++.|+++. ......   |.+++.++.+.+
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~---g~~~~~v~~~~~   74 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL----GPGDEVIVDANGHGSRYWVAAELA---GAKPVPVPVDDA   74 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC----CCCCEEEEeecccceehhhHHHhc---CCEEEEeccCCC
Confidence            4678999999997666789999999999999999987    67899999999999998 444333   999999998765


Q ss_pred             CCCCH--HHHHHHh-cCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcccc---ccCcccccEEEec
Q psy8850         122 GLITL--SQLEEKI-CSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI---NIQNYKVDLMSFS  195 (397)
Q Consensus       122 ~~~d~--~~l~~~i-~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~---~~~~~~~d~~~~s  195 (397)
                      +..+.  +.+++.. .++++++++++++|++|...|+++|+++|+++|+++|+|++++.+....   +....++|+++.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s  154 (170)
T cd01494          75 GYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFS  154 (170)
T ss_pred             CccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEE
Confidence            43333  2554433 5689999999999999999999999999999999999999999777654   4555589999999


Q ss_pred             cccccCCCCceEEEEe
Q psy8850         196 AHKIYGPKGIGALYIR  211 (397)
Q Consensus       196 ~~K~~g~~g~g~~~~~  211 (397)
                      +||++|+.|.|+++++
T Consensus       155 ~~K~~~~~~~G~l~~~  170 (170)
T cd01494         155 LHKNLGGEGGGVVIVK  170 (170)
T ss_pred             cccccCCCceEEEEeC
Confidence            9996565788999874

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.87  E-value=7.2e-20  Score=172.54  Aligned_cols=318  Identities=15%  Similarity=0.089  Sum_probs=201.3

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc-c
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK-K   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~-~   84 (397)
                      .+..+|.|.+++.+++......  + .    +...+...++.+.|++++....+.++|++||++|++++++....... .
T Consensus        89 lGh~hp~v~~Av~~ql~~l~~~--~-~----~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~  161 (442)
T TIGR03372        89 VGHRNPNVIAAVENQLAKQPLH--S-Q----ELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPR  161 (442)
T ss_pred             cCCCCHHHHHHHHHHHHhCCCc--c-c----ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhc
Confidence            4567899999999999763211  1 1    11234567788888888764445799999999999999996543221 1


Q ss_pred             CCCEEEEcCCCChhhHHHHHHH-hhC----C-----cEEEEeccCCCCCCCHHHHHHHhc------CCceEEEEecccCc
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKL-END----G-----FRVTYLKPKNNGLITLSQLEEKIC------SDTILVSVMLVNNE  148 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~-~~~----g-----~~v~~v~~~~~~~~d~~~l~~~i~------~~~~~v~~~~~~~~  148 (397)
                      .+.+|+.....|++.......+ ...    +     ..+..+|.+     |.+++++.+.      +++.+|+++.+...
T Consensus       162 gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~  236 (442)
T TIGR03372       162 GKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGE  236 (442)
T ss_pred             CCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCC
Confidence            3456777777666654333322 110    0     112334433     6777777664      35789999999999


Q ss_pred             cccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCCCCc
Q psy8850         149 IGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTR  217 (397)
Q Consensus       149 tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~  217 (397)
                      .|.+.|    ++++.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+ ..+|.++++++..+.
T Consensus       237 gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lg~G~~Pigavv~~~~i~~~  314 (442)
T TIGR03372       237 GGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLA--KALGGGVMPIGATIATEAVFSV  314 (442)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeeh--hhhcCCcccceEEEecHHHHHh
Confidence            999888    8999999999999999999985 3322    112223368998865  9 6544 347888888765544


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cC-cEEEeCCCCCCCCce
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IE-EIYINGDMNNRIPHN  293 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~-~~~~~~~~~~~~~~~  293 (397)
                      +...    ......+.+. |...+++..++|+.+.+  .++.++..++.++|++.|++.   .+ .+.-+.    ..+.+
T Consensus       315 ~~~~----~~~~~~T~~g-np~~~Aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vR----G~Gl~  383 (442)
T TIGR03372       315 LFDN----PFLHTTTFGG-NPLACAAALATINELLE--KNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEAR----GKGLL  383 (442)
T ss_pred             hhcc----CccccCCCCC-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe----cceEE
Confidence            4210    0001112222 44555555588888765  345667777777777777661   22 111111    12456


Q ss_pred             EEEEecCC-ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         294 LNISFNFI-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       294 ~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +-+.+... ....+...+.  |+.+.+..   +                  ..+.+||.++..+|++|+|+++++|.++
T Consensus       384 ~giel~~~~~~~~i~~~l~~~Gvl~~~~~---~------------------~~~~lr~~Ppl~~t~~~id~~~~~l~~~  441 (442)
T TIGR03372       384 MAIEFRDNEIGYAFAKELFQQNILVAGTL---N------------------NAKSIRIEPPLTITIEQCALVIKAAKDA  441 (442)
T ss_pred             EEEEeCChHHHHHHHHHHHHCCcEEeecC---C------------------CCCEEEEECCcccCHHHHHHHHHHHHHh
Confidence            66666532 2345555554  77664320   0                  1278999999999999999999999875

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.87  E-value=3.5e-21  Score=176.55  Aligned_cols=229  Identities=21%  Similarity=0.270  Sum_probs=171.8

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN  121 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~  121 (397)
                      .+.+.++.+++.+|++ ...++++|+|.++..++.+++    ++||+|+++..+|.|...++...   |+++++++...+
T Consensus        67 ~I~eAe~~aA~~fGAd-~t~flvnGsT~g~~a~i~a~~----~~gd~VLv~RN~HkSv~~alil~---ga~Pvyi~p~~~  138 (417)
T PF01276_consen   67 IIKEAEELAARAFGAD-KTFFLVNGSTSGNQAMIMALC----RPGDKVLVDRNCHKSVYNALILS---GAIPVYIPPEDN  138 (417)
T ss_dssp             HHHHHHHHHHHHHTES-EEEEESSHHHHHHHHHHHHHT----TTTCEEEEETT--HHHHHHHHHH---TEEEEEEEEEE-
T ss_pred             HHHHHHHHHHHhcCCC-eEEEEecCchHHHHHHHHHhc----CCCCEEEEcCCcHHHHHHHHHHc---CCeEEEecCCcc
Confidence            7889999999999998 368889999999999999998    89999999999999999999988   999999977521


Q ss_pred             -----CCCCH-----HHHHHHhcCC-----ceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccC----cccc
Q psy8850         122 -----GLITL-----SQLEEKICSD-----TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG----KIDI  182 (397)
Q Consensus       122 -----~~~d~-----~~l~~~i~~~-----~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~----~~~~  182 (397)
                           +.+++     +.+++++++.     ++++++++|++ -|.+.++++|+++|+++|++|+||+||+.-    ..+.
T Consensus       139 ~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~  217 (417)
T PF01276_consen  139 EYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPR  217 (417)
T ss_dssp             TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGT
T ss_pred             ccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCcc
Confidence                 25667     8999998753     34588988854 499999999999999999999999999832    2233


Q ss_pred             ccCccccc-------EEEecccc-ccCCCCceEEEEecCC-C--CccccccccCCccccccCCCCchhHHHHHHHHHHHH
Q psy8850         183 NIQNYKVD-------LMSFSAHK-IYGPKGIGALYIRRNP-R--TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA  251 (397)
Q Consensus       183 ~~~~~~~d-------~~~~s~~K-~~g~~g~g~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~  251 (397)
                      +....++|       +++.|.|| +.+....+++.++... .  +++...+      .-+.+++|++..++++..+..++
T Consensus       218 ~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l------~~~~TTSPSY~lmASlD~a~~~m  291 (417)
T PF01276_consen  218 SALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEAL------SMHQTTSPSYPLMASLDVARAQM  291 (417)
T ss_dssp             TCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHH------HHHS-SS--HHHHHHHHHHHHHH
T ss_pred             chhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHH------HHHcCCChHHHHHHHHHHHHHHH
Confidence            44456889       99999999 7788788999999765 2  2222222      22446678889999999998888


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHH---hhhcCcEEEeCCC
Q psy8850         252 -RIEMKEELKRILFLQKRLYNGL---MESIEEIYINGDM  286 (397)
Q Consensus       252 -~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~~~~~~  286 (397)
                       ...-+++.++..++...+++.|   .+ ..++.++.++
T Consensus       292 ~~~~G~~l~~~~i~~a~~~R~~i~~~~~-~~~~~~~~~~  329 (417)
T PF01276_consen  292 EEEEGRELLEEAIELAEEFRKKINRLND-IWGFKVLGPE  329 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHCC-T-SSEESS-S
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhcCC-CceEecCCcc
Confidence             5555777788888888888888   44 6677777653

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=99.87  E-value=7.4e-20  Score=160.12  Aligned_cols=331  Identities=16%  Similarity=0.156  Sum_probs=223.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccCCCC--CCCcchhhhHHHHHHHHHHHHHHHhCCCCCc-EEE-eCChhHHHHHHHHHhH
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQFGNPA--SRNHIYGWTAEKAIEKARNEVAQLIYADPRE-IIW-TSGATESNNLAIKGAA   79 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-i~~-~~g~t~a~~~~l~~l~   79 (397)
                      +++...|++|++..++.+..+.+-..  ......+........++++.+++++++|.+. |.| ..|+|....++...|.
T Consensus        11 aGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl   90 (365)
T COG1932          11 AGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLL   90 (365)
T ss_pred             CCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhh
Confidence            45556789999998888877554111  1112224566788999999999999999774 555 5577778999999988


Q ss_pred             hhhccCCCE--EEEcCCCChhhHHHHHHHhhCCc--EEEEeccCC--CC-CCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850          80 HFYKKRGKH--IITVQTEHKSVLDSIRKLENDGF--RVTYLKPKN--NG-LITLSQLEEKICSDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        80 ~~~~~~g~~--vl~~~~~~~s~~~~~~~~~~~g~--~v~~v~~~~--~~-~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~  152 (397)
                          .++..  |.+..++-.+...+-    +.+.  ++.......  .+ -++++...  +.++...|.+++..+.+|+.
T Consensus        91 ----~~~~~~yv~~g~Ws~~a~~eA~----~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~  160 (365)
T COG1932          91 ----GKRGTDYVDTGAWSEFAIKEAK----KVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVE  160 (365)
T ss_pred             ----cccCceeEeeeehhHhHHHHHH----HhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccceE
Confidence                34332  555544444443332    2232  222222112  22 22333322  44456779999999999998


Q ss_pred             ccH-HHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccc----cccC--
Q psy8850         153 QPI-LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ----IHGG--  225 (397)
Q Consensus       153 ~~l-~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~----~~~~--  225 (397)
                      .+- ..+.   .  +.++++|.++.....++|+.  ..|++.++.+|.+||.|.++++++++++++.+..    ++..  
T Consensus       161 v~~~p~~~---~--~~~~v~D~SS~ilsr~iDvs--k~dviyagaQKnlGpaGltvvIvr~~~l~r~~~~~~P~if~y~~  233 (365)
T COG1932         161 VPELPDIG---S--DGLLVADASSAILSRPIDVS--KYDVIYAGAQKNLGPAGLTVVIVRPDLLERAESYTLPSIFDYLT  233 (365)
T ss_pred             ccCCCCCC---C--CceEEEecccHHhcCCCChh--HcceEEEehhhccCccceEEEEEcHHHHhcccccCCchHhhchh
Confidence            772 2221   1  28999999999999999988  6899999999999999999999999988887554    2221  


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC-
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE-  302 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  302 (397)
                      ....+...+||++..+..+...++++.+  |++.+.++..+.++.|++.+++ .+.+.....+..+....++|.+.+.+ 
T Consensus       234 ~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~-s~fy~~~v~~~~RS~mnV~f~~~~~~l  312 (365)
T COG1932         234 HADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDK-SDFYRNLVAKANRSRMNVTFTLVDAEL  312 (365)
T ss_pred             hhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCccccccchhhccceeEEEEcCcHHH
Confidence            1123455778888999988899999976  6999999999999999999999 43333333333443333444444322 


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ...++..+.  |+..-.| +-                    ..+.+|+++...++.++++.+++.|+.+.+++
T Consensus       313 d~~fv~eae~~gl~~lkG-hr--------------------~vgGmRasiynA~~~e~veaL~~fm~~f~~~~  364 (365)
T COG1932         313 DKGFVAEAEAAGLIYLKG-HR--------------------SVGGLRASIYNAVPLEDVEALTDFMDWFEETY  364 (365)
T ss_pred             HHHHHHHHHHcCCceecc-cc--------------------CCCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence            233443333  5555544 11                    22559999999999999999999999987764

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.87  E-value=3.5e-19  Score=158.15  Aligned_cols=314  Identities=12%  Similarity=0.104  Sum_probs=214.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeC-ChhHHHHHHHHHhHhhhc----cCCCEEEEcCCCChhhHHHHHHHhhCCcEEE
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTS-GATESNNLAIKGAAHFYK----KRGKHIITVQTEHKSVLDSIRKLENDGFRVT  114 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~-g~t~a~~~~l~~l~~~~~----~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~  114 (397)
                      .+.+.+++++|++..|.+  .+.+.+ +|+++-.+-+..+...+.    ..+++||+++..|+++-.++.+.   |++|+
T Consensus       108 l~li~~Lq~~L~~ITG~D--avsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~---G~~VV  182 (496)
T COG1003         108 LELIYELQEWLKEITGMD--AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMA---GFKVV  182 (496)
T ss_pred             HHHHHHHHHHHHHhcCCc--eeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhc---CceEE
Confidence            468889999999999988  455544 444555555554443322    24589999999999999999988   99999


Q ss_pred             EeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcccc-ccCcccccEEE
Q psy8850         115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI-NIQNYKVDLMS  193 (397)
Q Consensus       115 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~-~~~~~~~d~~~  193 (397)
                      .|+++++|.+|+++|++++.++++++.+++|++-.=.-.++.+|+++.|++|..|..|+++--+.+.. ...++++|++-
T Consensus       183 ~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~H  262 (496)
T COG1003         183 VVKCDENGNVDLDDLRAKAEDNLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVH  262 (496)
T ss_pred             EEecCCCCCccHHHHHHHhccceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEE
Confidence            99999999999999999999999999999997653344569999999999999999999986433321 23345899999


Q ss_pred             ecccc-cc-----CCCCceEEEEecCCCCcccc-cc--ccCC-c-c--cc-----ccCCCCchhHHHHHHHHHHHH-HHH
Q psy8850         194 FSAHK-IY-----GPKGIGALYIRRNPRTRIEA-QI--HGGG-H-E--YG-----LRSGTLATHQIVGMGEAFRLA-RIE  254 (397)
Q Consensus       194 ~s~~K-~~-----g~~g~g~~~~~~~~~~~~~~-~~--~~~~-~-~--~~-----~~~~~~~~~~~~~l~~al~~~-~~~  254 (397)
                      +.+|| ++     |++|.|-+.++.++...+.. ..  .++. . .  ..     ....--++..+.-.++.+..+ .+|
T Consensus       263 lNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~G  342 (496)
T COG1003         263 LNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGADG  342 (496)
T ss_pred             eecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHHH
Confidence            99999 63     34468888888766554432 10  1111 0 0  00     000001112222222333333 457


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec------CCChHHHHHHhCCcEecccCccCCCCCCh
Q psy8850         255 MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN------FIEGESLLMAIKDIAVSSGSACTSASLEP  328 (397)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~i~~~~g~~~~~~~~~~  328 (397)
                      +++..+...-++.++..+|+..++   +.-.+.....+-+.++.+      +.+..++.++|...-+.+=...+|..   
T Consensus       343 L~~ase~AvLNANYia~rL~~~y~---~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPli---  416 (496)
T COG1003         343 LKQASEVAVLNANYIARRLKGYYP---VPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFPLI---  416 (496)
T ss_pred             HHHHHHHHHHhHHHHHHHhhhcCc---cccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCccc---
Confidence            888888888899999999987332   322111123455555554      56778999888733232211111100   


Q ss_pred             hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy8850         329 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELS  377 (397)
Q Consensus       329 ~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~  377 (397)
                                   =.+.+-|-++...+.+++|+++++|.++.++.++.-
T Consensus       417 -------------V~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~  452 (496)
T COG1003         417 -------------VAGTLMIEPTESESKEELDRFIDAMIAIREEADAVP  452 (496)
T ss_pred             -------------cccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence                         027788888888899999999999999999998864

>PRK06541 hypothetical protein; Provisional

Probab=99.87  E-value=1.7e-19  Score=171.65  Aligned_cols=334  Identities=13%  Similarity=0.093  Sum_probs=204.1

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh--c
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY--K   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~--~   83 (397)
                      .+..+|.+.+++++++.... ...  .  ..+ ..+...++.+.|++++..+.+.++|++||++|++.+++.....+  +
T Consensus        66 lGh~~p~v~~Av~~q~~~~~-~~~--~--~~~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~  139 (460)
T PRK06541         66 VGHGRAELAEAAAKQAGTLA-FFP--L--WSY-AHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLT  139 (460)
T ss_pred             CCCCCHHHHHHHHHHHhhCc-Ccc--c--ccc-CCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhc
Confidence            34678999999999997621 100  0  111 12345667778888765444579999999999999999654332  1


Q ss_pred             c--CCCEEEEcCCCChhhHHHHHHHhh-C----C-----cEEEEeccCCCCC-----CC--------HHHHHHHhc----
Q psy8850          84 K--RGKHIITVQTEHKSVLDSIRKLEN-D----G-----FRVTYLKPKNNGL-----IT--------LSQLEEKIC----  134 (397)
Q Consensus        84 ~--~g~~vl~~~~~~~s~~~~~~~~~~-~----g-----~~v~~v~~~~~~~-----~d--------~~~l~~~i~----  134 (397)
                      +  .+.+|+....+|++.......+.. .    +     ..+..+|.+....     -+        ++.+++.+.    
T Consensus       140 g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  219 (460)
T PRK06541        140 GKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGP  219 (460)
T ss_pred             CCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            1  246677666666555433322210 0    0     1123333322110     11        366777774    


Q ss_pred             CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEeccc-ccCccc----cccCcccccEEEecccc-ccCCC-
Q psy8850         135 SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQ-AVGKID----INIQNYKVDLMSFSAHK-IYGPK-  203 (397)
Q Consensus       135 ~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~-~~~~~~----~~~~~~~~d~~~~s~~K-~~g~~-  203 (397)
                      +++.+|+++.+++++|.+.|    +++|.++|++||+++|+|+++ ++|...    .......+|++++|  | +.++. 
T Consensus       220 ~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~g--K~l~~G~~  297 (460)
T PRK06541        220 DTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCA--KGITSGYS  297 (460)
T ss_pred             CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEec--ccccCCcc
Confidence            35778899988999999888    899999999999999999999 554321    11123358988765  9 55432 


Q ss_pred             CceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEe
Q psy8850         204 GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN  283 (397)
Q Consensus       204 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  283 (397)
                      .+|+++++++....+....  .........+. +...+++..++++.+.+  +.+.+++.++.++|.+.|++ +....++
T Consensus       298 pigav~~~~~i~~~~~~~~--~~~~~~~T~~g-np~~~aaala~l~~l~~--~~~~~~~~~~g~~l~~~L~~-l~~~~~v  371 (460)
T PRK06541        298 PLGAMIASDRLFEPFLDGP--TMFLHGYTFGG-HPVSAAVALANLDIFER--EGLLDHVRDNEPAFRATLEK-LLDLPIV  371 (460)
T ss_pred             ceeEEEEcHHHHHHhhcCC--CccccCCCCCC-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-hhcCCCe
Confidence            4799998876655443211  00001122332 33445555577777654  35678888999999999987 5322221


Q ss_pred             CCCCCCCCceEEEEecCCC-------h--------HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceE
Q psy8850         284 GDMNNRIPHNLNISFNFIE-------G--------ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI  346 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i  346 (397)
                      ... ...+.++.+.|....       .        ..+...+.  |+.+.+..                     .+.+.|
T Consensus       372 ~~v-rg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---------------------~g~~~l  429 (460)
T PRK06541        372 GDV-RGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADD---------------------RGDPVV  429 (460)
T ss_pred             EEE-EecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecC---------------------CCCCEE
Confidence            110 011445556653210       0        12333333  66665310                     112689


Q ss_pred             EEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         347 RFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       347 Ri~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ||+++..+|++|||+++++|.+++.++..
T Consensus       430 rl~Ppl~~t~~~id~~~~~l~~~l~~~~~  458 (460)
T PRK06541        430 QLAPPLISGQEEFDEIEQILRSVLTEAWA  458 (460)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999987654

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.87  E-value=1.7e-20  Score=165.00  Aligned_cols=309  Identities=14%  Similarity=0.105  Sum_probs=177.1

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHH--HHHHhHh--------hhccCCCEEEEcCCCChhhHHHHHHHh
Q psy8850          38 TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNL--AIKGAAH--------FYKKRGKHIITVQTEHKSVLDSIRKLE  107 (397)
Q Consensus        38 ~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~--~l~~l~~--------~~~~~g~~vl~~~~~~~s~~~~~~~~~  107 (397)
                      ...+.+.++|+.+++++|+++++|+...+++-.+..  +..++..        |...+.-+.|++.|.|.-++...+.+ 
T Consensus        66 G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~-  144 (425)
T PF12897_consen   66 GGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHF-  144 (425)
T ss_dssp             S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHC-
T ss_pred             CccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhh-
Confidence            455789999999999999999999987777654322  2222221        22244568899999888777666666 


Q ss_pred             hCCcEEEEeccCCCCCCCHHHHHHHhcC--CceE-EEEecccCcccccccHHHHHHHHH----hcCcEEEEecccccCcc
Q psy8850         108 NDGFRVTYLKPKNNGLITLSQLEEKICS--DTIL-VSVMLVNNEIGVIQPILEIGELCR----SKGVIFHCDAAQAVGKI  180 (397)
Q Consensus       108 ~~g~~v~~v~~~~~~~~d~~~l~~~i~~--~~~~-v~~~~~~~~tG~~~~l~~i~~l~~----~~gi~livD~a~~~~~~  180 (397)
                        |++.+.||.+++| +|.|.+|+++.+  ..|. .|++..+||||.+++-+.+.+++.    ..+..|++|++|.+-++
T Consensus       145 --Giemi~VpM~~dG-PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL  221 (425)
T PF12897_consen  145 --GIEMIPVPMTEDG-PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHL  221 (425)
T ss_dssp             --T-EEEEEEEETTE-E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BS
T ss_pred             --CcEEEecCCCCCC-CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeec
Confidence              9999999999999 699999999865  4554 489999999999999877777764    56999999999986655


Q ss_pred             cc--------ccC-------cccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHH
Q psy8850         181 DI--------NIQ-------NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM  244 (397)
Q Consensus       181 ~~--------~~~-------~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  244 (397)
                      .-        ++.       ..+..+...|.+| .+.+.|++++..+.+.++.+...+.-      ...|.--..++.-.
T Consensus       222 ~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~------~tIgpdKvNQLRHv  295 (425)
T PF12897_consen  222 YDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSV------QTIGPDKVNQLRHV  295 (425)
T ss_dssp             SSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHH------H-S---HHHHHHHH
T ss_pred             cccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcC------ceeCccHHHHHHHH
Confidence            11        110       0134577889999 67777899999997766655443211      11211112222211


Q ss_pred             --HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC---c-EEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850         245 --GEAFR-LARIEMKEELKRILFLQKRLYNGLMESIE---E-IYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV  315 (397)
Q Consensus       245 --~~al~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~  315 (397)
                        ....+ -+..+|++..+.++-..+.+.+.|++.+.   + -.+..+.+   ++++.+...+-.+..+++..+  ||.+
T Consensus       296 rff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~G---GYFIsld~~~G~AkrvV~lakeAGV~L  372 (425)
T PF12897_consen  296 RFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKG---GYFISLDVLDGTAKRVVELAKEAGVAL  372 (425)
T ss_dssp             HHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SB---SS-EEEEESTT-HHHHHHHHHHTTEE-
T ss_pred             HHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCC---ceEEEEecCCChHHHHHHHHHHhCcee
Confidence              11222 23344555555555555555555555444   3 34444544   778888887777778887776  9999


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .+-....|           +|.++.  .+.|||+++. .+.+|++.+++.+.-|++..
T Consensus       373 T~AGAtfP-----------yg~DP~--D~nIRiAPS~-P~leel~~Am~~~~~cv~la  416 (425)
T PF12897_consen  373 TPAGATFP-----------YGKDPR--DSNIRIAPSY-PSLEELETAMDVFATCVKLA  416 (425)
T ss_dssp             --TTTTSG-----------GG--TT--S-EEEE--SS-S-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCC-----------CCCCCC--CCcEEecCCC-CCHHHHHHHHHHHHHHHHHH
Confidence            88444443           222221  2789999996 78999999999999887543

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>KOG1359|consensus

Probab=99.87  E-value=6.9e-20  Score=154.29  Aligned_cols=316  Identities=18%  Similarity=0.174  Sum_probs=221.7

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      .+|+++++-+++++.+...+.+-.+-.++  +.+...++..|+++.+-+  +.++.+++-.|+..++-++.    .|.|-
T Consensus        82 shPeii~a~~~aleeyGaGlssvrfIcGt--q~iHk~LE~kiAqfh~rE--D~ilypscfdANag~feail----~pedA  153 (417)
T KOG1359|consen   82 SHPEIINAGQKALEEYGAGLSSVRFICGT--QDIHKLLESKIAQFHGRE--DTILYPSCFDANAGAFEAIL----TPEDA  153 (417)
T ss_pred             CChHHHHHHHHHHHHhCCCccceeEEecc--hHHHHHHHHHHHHHhCCC--ceEEeccccccchHHHHHhc----Chhhh
Confidence            47899999999999866555543444444  568889999999999966  56666777788888888877    78899


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      |+-.+..|.|....+..+++.            +.+|+-+++..+.+    +.++|.-....++.|-+.|+++|.+++++
T Consensus       154 vfSDeLNhASIIdGirLckry------------~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~k  221 (417)
T KOG1359|consen  154 VFSDELNHASIIDGIRLCKRY------------RHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKK  221 (417)
T ss_pred             hhccccccchhhhhhHHHhhh------------ccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHHHh
Confidence            999999999999888877532            34567777765543    56788888888999999999999999999


Q ss_pred             cCcEEEEecccccCccc---------cccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCC
Q psy8850         165 KGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~---------~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
                      ||.++++|++|+.|...         ++.. -++|++..++.| ++|..| |+..+++.+...+++....    +-|. +
T Consensus       222 YgaLlfiDecHaTgf~G~tGrGt~E~~~vm-~~vdiinsTLgKAlGga~G-Gyttgp~~li~llrqr~Rp----ylFS-n  294 (417)
T KOG1359|consen  222 YGALLFIDECHATGFFGETGRGTAEEFGVM-GDVDIINSTLGKALGGASG-GYTTGPKPLISLLRQRSRP----YLFS-N  294 (417)
T ss_pred             cCcEEEEeecccceeecCCCCChHHHhCCC-CcceehhhhhhhhhcCCCC-CCccCChhHHHHHHhcCCc----eeec-C
Confidence            99999999999855432         2222 278999999999 666665 9999988766555332211    1111 2


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC--
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK--  311 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--  311 (397)
                      +.+...+....++++.+.. -.+..++.+.+.+++++.++.  .|+.+.+..-   + +..+-+.+ .-+.++.+.|.  
T Consensus       295 slppavV~~a~ka~dllm~-s~~~i~~~~a~~qrfr~~me~--aGftIsg~~h---P-I~pv~lGda~lA~~~ad~lLk~  367 (417)
T KOG1359|consen  295 SLPPAVVGMAAKAYDLLMV-SSKEIQSRQANTQRFREFMEA--AGFTISGASH---P-ICPVMLGDARLASKMADELLKR  367 (417)
T ss_pred             CCChhhhhhhHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHh--cCceecCCCC---C-ccceecccHHHHHHHHHHHHhc
Confidence            3333333333456665543 255677888889999999987  8988887432   2 22222222 12334444443  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      |+.+-.-++.                ..+.+...||+.++..+++||||++++++.++.+-+.
T Consensus       368 Gi~Vigfs~P----------------vVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~  414 (417)
T KOG1359|consen  368 GIYVIGFSYP----------------VVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN  414 (417)
T ss_pred             CceEEeecCC----------------cCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence            7766532211                1233457799999999999999999999999876554

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.87  E-value=4.9e-19  Score=167.14  Aligned_cols=327  Identities=15%  Similarity=0.133  Sum_probs=199.1

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      +..+|.+.+++++++.... ....     .....+...++.+.|++++.-. .+.++|++||++|++.+++... .+++ 
T Consensus        55 Gh~~p~v~~ai~~ql~~l~-~~~~-----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr-~~tg-  126 (425)
T PRK07495         55 GHRHPRVIAAVKAQLDRFT-HTCH-----QVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIAR-AATG-  126 (425)
T ss_pred             CCCCHHHHHHHHHHHhhcc-Cccc-----CccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHH-HhhC-
Confidence            5678999999999997632 1110     1112335566777888877533 2479999999999999999644 4434 


Q ss_pred             CCEEEEcCCCChhhHHHHHHH-hh-----CC-----cEEEEeccCCC-CCCC----HHHHHHHhc-----CCceEEEEec
Q psy8850          86 GKHIITVQTEHKSVLDSIRKL-EN-----DG-----FRVTYLKPKNN-GLIT----LSQLEEKIC-----SDTILVSVML  144 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~-~~-----~g-----~~v~~v~~~~~-~~~d----~~~l~~~i~-----~~~~~v~~~~  144 (397)
                      +.+|+....+|++.......+ ..     .+     ..+..+|.+.+ ..++    ++++++.+.     +++++|+++.
T Consensus       127 r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EP  206 (425)
T PRK07495        127 RSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEP  206 (425)
T ss_pred             CCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence            356666666565554332221 10     01     12344555421 1122    445576653     3578999998


Q ss_pred             ccCcccccc-c---HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCCCCceEEEEecCC
Q psy8850         145 VNNEIGVIQ-P---ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNP  214 (397)
Q Consensus       145 ~~~~tG~~~-~---l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~  214 (397)
                      ++..+|.+. |   +++|.++|++||+++|+|++++ +|...    .+.....+|++++|  | +.++..+|+++++++.
T Consensus       207 v~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tls--K~l~~G~pigav~~~~~i  284 (425)
T PRK07495        207 VQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMA--KGLAGGFPLAAVTGRAEI  284 (425)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeeh--hhhcCCccceEEEEcHHH
Confidence            888888654 3   7899999999999999999987 22211    11122356776665  9 5544458999998776


Q ss_pred             CCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceE
Q psy8850         215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL  294 (397)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  294 (397)
                      .+.+.+...      ....+ .+...+++..++++.+.+  ..+.++.+++.++|++.|++....+..+.... ..+.++
T Consensus       285 ~~~~~~~~~------~~T~~-~~pl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-G~Gl~~  354 (425)
T PRK07495        285 MDAPGPGGL------GGTYG-GNPLGIAAAHAVLDVIEE--EDLCERANQLGNRLKQRLASLRETVPEIADIR-GPGFMN  354 (425)
T ss_pred             HhccCCCCc------CCCCC-CCHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHhhCCCeeeee-cCceEE
Confidence            655543221      12223 344445555588888865  34666777777777777765111111111100 114566


Q ss_pred             EEEecCCC--------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHH
Q psy8850         295 NISFNFIE--------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK  364 (397)
Q Consensus       295 ~~~~~~~~--------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  364 (397)
                      .+.+...+        ...+...+.  |+.+....                     ..++.|||.++..++++++|++++
T Consensus       355 ~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g---------------------~~~~~~r~~Ppl~it~~~id~~~~  413 (425)
T PRK07495        355 AVEFNDADSGLPSAEFANRVRLKALEKGLILLTCG---------------------VHGNVIRFLAPITIQDDVFAEALD  413 (425)
T ss_pred             EEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecC---------------------CCCCEEEEeCCCccCHHHHHHHHH
Confidence            66664321        123333333  66654310                     012789999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy8850         365 LLKMKVKKLR  374 (397)
Q Consensus       365 ~l~~~~~~~~  374 (397)
                      +|.+++++++
T Consensus       414 ~l~~~l~~~~  423 (425)
T PRK07495        414 ILEASILEAS  423 (425)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>PRK06105 aminotransferase; Provisional

Probab=99.87  E-value=1.8e-19  Score=171.71  Aligned_cols=334  Identities=13%  Similarity=0.094  Sum_probs=204.3

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|++.+++.+++.... ...    ..+....+...++.+.|++++..+.+.++|++||++|++++++.......  
T Consensus        62 lGh~~p~i~~Ai~~q~~~~~-~~~----~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~  136 (460)
T PRK06105         62 LGFSEQRLVEAAARQMKKLP-FYH----TFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNAL  136 (460)
T ss_pred             CCCCCHHHHHHHHHHHHhCC-Cee----cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence            34678999999999997621 100    11111234556788888888765445799999999999999996542210  


Q ss_pred             --cCCCEEEEcCCCChhhH-HHHHHHhhC------C---cEEEEeccCCCCC-------------CCHHHHHHHhc----
Q psy8850          84 --KRGKHIITVQTEHKSVL-DSIRKLEND------G---FRVTYLKPKNNGL-------------ITLSQLEEKIC----  134 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~-~~~~~~~~~------g---~~v~~v~~~~~~~-------------~d~~~l~~~i~----  134 (397)
                        ..+.+|+.....|++.. .+.......      +   ..+..+|......             ...+++++++.    
T Consensus       137 g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~  216 (460)
T PRK06105        137 GRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGP  216 (460)
T ss_pred             CCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCC
Confidence              12356666555555443 332211100      1   1122233221100             02466777773    


Q ss_pred             CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-C
Q psy8850         135 SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-K  203 (397)
Q Consensus       135 ~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~  203 (397)
                      +++.+|+++.++...|.+.|    ++.+.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+ .
T Consensus       217 ~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~g--K~lggG~~  294 (460)
T PRK06105        217 DTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMS--KQLSSSYQ  294 (460)
T ss_pred             CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeee--cccccCcc
Confidence            46789999999988898877    8999999999999999999984 4432    122334468999887  9 6553 2


Q ss_pred             CceEEEEecCCCCccccccc-cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEE
Q psy8850         204 GIGALYIRRNPRTRIEAQIH-GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI  282 (397)
Q Consensus       204 g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  282 (397)
                      ++|+++++++....+.+... .+......+.+. |....++..++|+.+.+  +++.++..++.++|++.|++ +....+
T Consensus       295 P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~g-npl~~aaa~a~L~~i~~--~~l~~~v~~~g~~l~~~L~~-l~~~~~  370 (460)
T PRK06105        295 PLSAVLMNEKVYDPIADESGKIGTFGHGFTASG-HPVAAAVALENLAIIEE--RDLVGNAAERGARLQARLRA-LADHPL  370 (460)
T ss_pred             cceEEEEcHHHHHHHhcccccCcccccCCCCCC-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-hhcCCC
Confidence            47888888765444332110 000111223333 34445555578888876  46778888888888888877 432222


Q ss_pred             eCCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEE
Q psy8850         283 NGDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF  348 (397)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  348 (397)
                      +.. -...+.++.+.+....            ...+...+.  |+.+.+.                        ++.+|+
T Consensus       371 v~~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~------------------------g~~i~l  425 (460)
T PRK06105        371 VGE-VRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM------------------------GDTLAF  425 (460)
T ss_pred             eEE-EEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec------------------------CCEEEE
Confidence            211 1112444455553110            123333333  6655431                        268999


Q ss_pred             eeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         349 TIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       349 ~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +++..+|++|||+++++|.++++++++
T Consensus       426 ~Ppl~it~~eid~~~~~l~~~l~~~~~  452 (460)
T PRK06105        426 CPPLIITAAQVDEMVDRFGRALDDVAA  452 (460)
T ss_pred             ECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988765

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.87  E-value=2.2e-19  Score=162.26  Aligned_cols=314  Identities=20%  Similarity=0.205  Sum_probs=205.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ..+|.|.+++++++.+        ...++. ..+..-++.+.++++++.- +.+.|++|||+|...+++. .+.++++ +
T Consensus        69 H~~p~V~~Av~~~l~~--------G~~fg~-Pte~Ei~~Aell~~~~p~~-e~vrfvnSGTEAtmsAiRl-ARa~TgR-~  136 (432)
T COG0001          69 HAHPAVVEAVQEQLER--------GLSFGA-PTELEVELAELLIERVPSI-EKVRFVNSGTEATMSAIRL-ARAYTGR-D  136 (432)
T ss_pred             CCCHHHHHHHHHHHHh--------cCCCCC-CCHHHHHHHHHHHHhcCcc-cEEEEecchhHHHHHHHHH-HHHhhCC-C
Confidence            4578999999999987        222221 2345667778888888863 4899999999999999994 5566554 7


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCC-----------------cEEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccC
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDG-----------------FRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNN  147 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g-----------------~~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~  147 (397)
                      +|+..+.+|+.....+-.-...|                 -.+..+|+|     |++.+++++.+   +..+|+++....
T Consensus       137 kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g~~IAaVIvEPv~g  211 (432)
T COG0001         137 KIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEYGDDIAAVIVEPVAG  211 (432)
T ss_pred             eEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHcCCcEEEEEeccccC
Confidence            88888888887766544321111                 123344554     89999998875   688999999998


Q ss_pred             ccccccc----HHHHHHHHHhcCcEEEEecccccCcccc----ccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850         148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKIDI----NIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI  218 (397)
Q Consensus       148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~~~----~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~  218 (397)
                      ..|.+.|    ++.|.++|+++|+++|.|++......++    +...+.+|+.++.  | +.|+..+|++.++++..+.+
T Consensus       212 n~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlttlG--KiIGGGlP~ga~gGr~eiM~~~  289 (432)
T COG0001         212 NMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTTLG--KIIGGGLPIGAFGGRAEIMEQL  289 (432)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhhhh--hhhcCCcceeeeccHHHHHhhh
Confidence            8999888    7899999999999999999987444432    2233367888877  9 77777799999998877755


Q ss_pred             ccccccCCccccccCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcEEEeCCCCCCCCceE
Q psy8850         219 EAQIHGGGHEYGLRSGTL--ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNL  294 (397)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~  294 (397)
                      .+.-      .-+..||.  |...+++-.++++.+.+. +...+++.++.++|++.|++..  -++.+...   ....++
T Consensus       290 ~p~g------~vyqaGT~sgnplamaAG~atl~~l~~~-~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~---~~gsm~  359 (432)
T COG0001         290 APLG------PVYQAGTLSGNPLAMAAGLATLEELMTE-EGVYERLDALGERLAEGLRAAAERHGIPLTVN---RVGSMF  359 (432)
T ss_pred             CCCC------CccccCCCCCcHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe---eecceE
Confidence            4432      11222332  345666666788877641 1134455555555555554421  23333322   125566


Q ss_pred             EEEecCCCh-----------H---HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         295 NISFNFIEG-----------E---SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       295 ~~~~~~~~~-----------~---~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      .+.|.....           .   .+...+.  ||.+.|+.+                       ...-+|..  +++++
T Consensus       360 ~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~-----------------------ea~flS~a--hte~d  414 (432)
T COG0001         360 GIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQF-----------------------EAGFLSTA--HTEED  414 (432)
T ss_pred             EEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCccc-----------------------cceeeecc--cCHHH
Confidence            777654211           1   1222221  566655421                       22334444  69999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy8850         359 IDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       359 i~~~~~~l~~~~~~~~~  375 (397)
                      ||+.++++.++++++.+
T Consensus       415 i~~~~~a~~~~~~~~~~  431 (432)
T COG0001         415 IDRTLEAADEAFKELAG  431 (432)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999888754

>KOG1360|consensus

Probab=99.86  E-value=1.6e-19  Score=158.18  Aligned_cols=324  Identities=19%  Similarity=0.188  Sum_probs=229.1

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      -+|+|++++.+.+..+.+....-....|  ......+++..|+++..-+. .++|++. --|++..+..|...  -||-+
T Consensus       186 ~Hp~V~~A~~~tl~~hG~GAGGTRNIsG--~s~~hv~LE~eLA~LHqK~a-ALlFsSC-fVANDstLftLak~--lpgce  259 (570)
T KOG1360|consen  186 RHPEVLDAMHDTLDRHGAGAGGTRNISG--HSKHHVRLEAELADLHQKEA-ALLFSSC-FVANDSTLFTLAKK--LPGCE  259 (570)
T ss_pred             CChHHHHHHHHHHHHcCCCcCCccccCC--CCchhhhHHHHHHHHhcCcc-eeeeeee-eeccchHHHHHHHH--CCCcE
Confidence            4799999999999885432211011111  13456778999999998663 4555544 46888888877754  37788


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      |+-.+..|.|....++..   +..=..+..+     |+++|++++.+    .|++|-++.+++++|.++|+++|.+++++
T Consensus       260 i~SD~gNHASMI~GIrns---~v~K~IFrHN-----D~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~  331 (570)
T KOG1360|consen  260 IFSDEGNHASMIQGIRNS---RVPKHIFRHN-----DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHK  331 (570)
T ss_pred             EeccccchHHHHHHhhhc---CCcceeeccC-----CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHH
Confidence            888888888888777655   4433333333     89999999864    57899999999999999999999999999


Q ss_pred             cCcEEEEecccccCccc--------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         165 KGVIFHCDAAQAVGKID--------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~--------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      ||++-++|++|++|...        -+-..-..|++++++.|.+|-.| |++.....+.+-++.+..|    .-|+.+- 
T Consensus       332 yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG-GYIAat~~LvDmiRSyAaG----FIFTTSL-  405 (570)
T KOG1360|consen  332 YGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG-GYIAATRKLVDMIRSYAAG----FIFTTSL-  405 (570)
T ss_pred             hCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc-ceehhhhhHHHHHHHhcCc----eEEecCC-
Confidence            99999999999855432        22222268999999999988876 9999888777777766655    2233333 


Q ss_pred             chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC-hHHHHHHhC---
Q psy8850         237 ATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE-GESLLMAIK---  311 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~---  311 (397)
                      +...+.+...+++.+.. +-..+++..+++..++++.|.+  .|+.+...+    .+++.+.+.+.. ..++.+.|.   
T Consensus       406 PP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~--~GiPVi~~p----SHIiPv~vgda~l~~~~sd~Li~~h  479 (570)
T KOG1360|consen  406 PPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLME--LGIPVIPNP----SHIIPVRVGDAALAKQASDILISKH  479 (570)
T ss_pred             ChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--cCCcccCCC----cceeeeeccCHHHHHHHHHHHHHhc
Confidence            33444444467777754 3456677788889999999998  688887665    356566654322 233333332   


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +|.+..-.+..                ...+...+||.++..+|++.++.+++.|..++.++.
T Consensus       480 ~iYvQaINyPT----------------V~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~  526 (570)
T KOG1360|consen  480 NIYVQAINYPT----------------VARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG  526 (570)
T ss_pred             CeEEEeccCCc----------------ccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            67665432111                123446799999999999999999999999988764

>PRK07678 aminotransferase; Validated

Probab=99.86  E-value=2.1e-19  Score=170.88  Aligned_cols=336  Identities=13%  Similarity=0.130  Sum_probs=202.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc--
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK--   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~--   84 (397)
                      +..+|+|.+++.+++......+      ..+ ..+...++.+.|+++++.. +.++|++||++|++.+++.....+..  
T Consensus        62 Gh~~p~v~~ai~~q~~~~~~~~------~~~-~~~~~~~lae~l~~~~~~~-~~v~f~~sGseA~e~AlklAr~~t~~~g  133 (451)
T PRK07678         62 GYGRKELAEAAYEQLKTLSYFP------LTQ-SHEPAIKLAEKLNEWLGGE-YVIFFSNSGSEANETAFKIARQYHAQKG  133 (451)
T ss_pred             CCCCHHHHHHHHHHHHhcCccc------ccc-CCHHHHHHHHHHHHhCCCC-CEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence            5678999999999987632111      011 1234567888888887653 47999999999999999965543211  


Q ss_pred             --CCCEEEEcCCCChhhHHHHHHHh-hC---------CcEEEEeccCCCCCC---------C---HHHHHHHhc----CC
Q psy8850          85 --RGKHIITVQTEHKSVLDSIRKLE-ND---------GFRVTYLKPKNNGLI---------T---LSQLEEKIC----SD  136 (397)
Q Consensus        85 --~g~~vl~~~~~~~s~~~~~~~~~-~~---------g~~v~~v~~~~~~~~---------d---~~~l~~~i~----~~  136 (397)
                        .+.+|+.....|++......... ..         ...+..+|.+.....         +   ++.+++.+.    ++
T Consensus       134 ~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  213 (451)
T PRK07678        134 EPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSET  213 (451)
T ss_pred             CCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCc
Confidence              23567776666665543322221 00         012233333221111         1   233566663    46


Q ss_pred             ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CCc
Q psy8850         137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KGI  205 (397)
Q Consensus       137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g~  205 (397)
                      +.+|+++.++...|.+.|    ++++.++|++||+++|+|+++. +|..-    .+.....+|+++++  | +.|+ ..+
T Consensus       214 iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~g--K~lggG~~Pi  291 (451)
T PRK07678        214 IAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMA--KGITSAYLPL  291 (451)
T ss_pred             eEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEee--cccccCCcce
Confidence            889999999988888876    7899999999999999999985 43321    22233468999887  9 6554 358


Q ss_pred             eEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC
Q psy8850         206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD  285 (397)
Q Consensus       206 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  285 (397)
                      |.++++++..+.+.+....+......+.+. |...+++..++|+.+.+  +.+.++..++.++|++.|++.+....++..
T Consensus       292 ~av~~~~~i~~~~~~~~~~~~~~h~~T~~g-np~~~aaa~a~l~~l~~--~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~  368 (451)
T PRK07678        292 SATAVKKEIYEAFKGKGEYEHFRHVNTFGG-NPAACALALKNLEIMEN--ENLIERSAQLGELLLEQLKEELGEHPLVGD  368 (451)
T ss_pred             eEEEEcHHHHHHHhccCcccccccCCCCCc-CHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            999999776554432110000111223333 34555555588888765  356677777777777777542222111111


Q ss_pred             CCCCCCceEEEEecCC-------C---hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC
Q psy8850         286 MNNRIPHNLNISFNFI-------E---GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF  353 (397)
Q Consensus       286 ~~~~~~~~~~~~~~~~-------~---~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~  353 (397)
                       ....+.++.+.+...       +   ...+...+.  |+.+.+.....+                 ..++.|||+++..
T Consensus       369 -vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~-----------------~~~~~lrl~Ppl~  430 (451)
T PRK07678        369 -IRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVA-----------------GYNNVLTLSPPLV  430 (451)
T ss_pred             -EEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCcccc-----------------CCCCEEEEECCCc
Confidence             011144555555311       1   123444443  776653211000                 1137899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q psy8850         354 TTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       354 ~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +|++|||+++++|.++++++
T Consensus       431 it~~eid~~~~~l~~~l~~~  450 (451)
T PRK07678        431 ISSEEIAFIVGTLKTALERI  450 (451)
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999998765

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.86  E-value=6.2e-19  Score=167.78  Aligned_cols=326  Identities=16%  Similarity=0.137  Sum_probs=200.9

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .+..+|+|.+++.+++.... ....     .....+...++.+.|++.+... .+.++|++||++|++.+++.. +.+++
T Consensus        70 lGh~~p~v~~ai~~q~~~~~-~~~~-----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tg  142 (443)
T PRK06058         70 VGNSAPRVVEAVREQVARFT-HTCF-----MVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIA-RSYTG  142 (443)
T ss_pred             cCCCCHHHHHHHHHHHHhcc-Cccc-----cccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhhC
Confidence            34678999999999997621 1111     1111245567778888887532 247999999999999999954 34434


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhh------CCc-----EEEEeccCCCC-C-----C--------CHHHHHHHhc-CCce
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLEN------DGF-----RVTYLKPKNNG-L-----I--------TLSQLEEKIC-SDTI  138 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~------~g~-----~v~~v~~~~~~-~-----~--------d~~~l~~~i~-~~~~  138 (397)
                      + ++|+....+|++.......+..      .++     .+..+|..... .     .        .++.+++.+. ++++
T Consensus       143 r-~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iA  221 (443)
T PRK06058        143 R-QAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLA  221 (443)
T ss_pred             C-CeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceE
Confidence            4 6777777777766644332210      011     12223321100 0     0        1233444443 5788


Q ss_pred             EEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCCCCceEE
Q psy8850         139 LVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGPKGIGAL  208 (397)
Q Consensus       139 ~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~  208 (397)
                      +|+++.++...|.+.|    +++|.++|++||+++|.|+++. +|...    .......+|+++++  | +.|+..+|++
T Consensus       222 avi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~g--K~l~~G~Pi~av  299 (443)
T PRK06058        222 AVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTA--KGIAGGLPLSAV  299 (443)
T ss_pred             EEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEc--ccccCCCccEEE
Confidence            9999988877787765    7999999999999999999986 32211    12223467999887  9 6554458999


Q ss_pred             EEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC
Q psy8850         209 YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN  288 (397)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  288 (397)
                      +++++..+.+.....+      .+.+ .|...+++..++|+.+.+  .++.++..++.++|.+.|++......++.+- .
T Consensus       300 ~~~~~i~~~~~~~~~~------~T~~-gnpl~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-r  369 (443)
T PRK06058        300 TGRAEIMDAPHPGGLG------GTYG-GNPVACAAALAAIETIEE--DDLVARARQIEALMTDRLRALAAEDDRIGDV-R  369 (443)
T ss_pred             EEcHHHHhhccCCCCC------CCCC-CCHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHhhCCcEEee-e
Confidence            9987765555433221      2233 344555565578887765  3567788888888888887621111222111 1


Q ss_pred             CCCceEEEEecCC----Ch----HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         289 RIPHNLNISFNFI----EG----ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       289 ~~~~~~~~~~~~~----~~----~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      ..+.++.+.+...    +.    ..+...+.  |+.+.++..+                     +++||+.++..+|+++
T Consensus       370 g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~---------------------~~~lr~~Ppl~~t~~~  428 (443)
T PRK06058        370 GRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTY---------------------GNVIRLLPPLVIGDEL  428 (443)
T ss_pred             ccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCC---------------------CCEEEEECCCccCHHH
Confidence            1144555555321    11    22333333  7777543110                     2789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKVKK  372 (397)
Q Consensus       359 i~~~~~~l~~~~~~  372 (397)
                      ||+++++|.+++++
T Consensus       429 i~~~~~~l~~~l~~  442 (443)
T PRK06058        429 LREGLDVLEAALAD  442 (443)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999865

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.86  E-value=5.4e-19  Score=167.52  Aligned_cols=331  Identities=15%  Similarity=0.128  Sum_probs=202.5

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|.+.+++.+++....-. .  .+..   ..+...++.+.|++++....+.++|++||++|++.+++....+..  
T Consensus        60 lGh~~p~v~~ai~~ql~~l~~~-~--~~~~---~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~  133 (442)
T PRK13360         60 AGHGRPEIVEAVRAQAGELDYA-P--AFQM---GHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRAR  133 (442)
T ss_pred             cCCCCHHHHHHHHHHHHhCCCc-c--cCCc---CCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence            3567899999999998763211 1  1111   123456788888888753345799999999999999996553321  


Q ss_pred             --cCCCEEEEcCCCChhhHHH-HHHHhh------CC---cEEEEeccCCC---CCC----------CHHHHHHHhc----
Q psy8850          84 --KRGKHIITVQTEHKSVLDS-IRKLEN------DG---FRVTYLKPKNN---GLI----------TLSQLEEKIC----  134 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~~~-~~~~~~------~g---~~v~~v~~~~~---~~~----------d~~~l~~~i~----  134 (397)
                        ..+.+|+....+|++.... ......      .+   ..+..+|....   ...          .++++++++.    
T Consensus       134 g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~  213 (442)
T PRK13360        134 GEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDA  213 (442)
T ss_pred             CCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCC
Confidence              1235777777766665432 211110      00   12333443311   001          1457777774    


Q ss_pred             CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEeccc-ccCcc----ccccCcccccEEEecccc-ccCC-C
Q psy8850         135 SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQ-AVGKI----DINIQNYKVDLMSFSAHK-IYGP-K  203 (397)
Q Consensus       135 ~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~-~~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~  203 (397)
                      +++.+|+++.++...|.+.|    +++|.++|++||+++|+|+++ ++|..    ..+.....+|+++++  | +.|+ .
T Consensus       214 ~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~g--K~l~gG~~  291 (442)
T PRK13360        214 STIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCA--KGLTNGAI  291 (442)
T ss_pred             CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeeee--eccccCcc
Confidence            45789999999999999988    899999999999999999998 44432    122233468988776  9 5443 3


Q ss_pred             CceEEEEecCCCCccccccccC-CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEE
Q psy8850         204 GIGALYIRRNPRTRIEAQIHGG-GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI  282 (397)
Q Consensus       204 g~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  282 (397)
                      .+|.++++++..+.+....... .....++.+ .+...+++..++++.+.+  ..+.++..++.+++++.|++ +.....
T Consensus       292 P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~-g~pl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~l~~-l~~~~~  367 (442)
T PRK13360        292 PMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYS-GHPLACAAALATLDLYER--EGLLTRAARLAPYWEDALHS-LRDAPH  367 (442)
T ss_pred             ceEEEEEcHHHHHHhhcCCccccccccCCCCC-CCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-hhcCCC
Confidence            4788888866544332110000 001122333 355566666688888765  35677888888888888876 432211


Q ss_pred             eCCCCCCCCceEEEEecCC------ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850         283 NGDMNNRIPHNLNISFNFI------EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT  354 (397)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~  354 (397)
                      +.+. ...+.+..+.+...      ...++...+.  |+.+...                        ++.+||+++..+
T Consensus       368 v~~v-rG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~------------------------~~~lr~~Ppl~~  422 (442)
T PRK13360        368 VIDI-RNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT------------------------GDILALSPPLII  422 (442)
T ss_pred             eeee-eccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec------------------------CCEEEEeCCCcc
Confidence            1110 01122333444211      1224444443  6666432                        267999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy8850         355 TEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       355 ~~~~i~~~~~~l~~~~~~~  373 (397)
                      |++|||+++++|.++++++
T Consensus       423 t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        423 EEAQIDELFDILAQALKET  441 (442)
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998654

>PRK15029 arginine decarboxylase; Provisional

Probab=99.86  E-value=3.4e-19  Score=175.04  Aligned_cols=222  Identities=15%  Similarity=0.114  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-  120 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-  120 (397)
                      .+.++++.++++||++ ...++++|+|.++.+++.+++    ++||+|+++.++|.|...++...   |+++++++..- 
T Consensus       206 ~I~eAq~~aA~~fgA~-~t~FlvNGST~gn~a~i~a~~----~~gd~Vlv~RN~HKSv~~al~L~---ga~Pvyl~P~~~  277 (755)
T PRK15029        206 AFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLILT---GAKPVYMVPSRN  277 (755)
T ss_pred             HHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHHHc---CCeEEEeccccc
Confidence            6889999999999997 479999999999999999988    89999999999999999998888   99999996542 


Q ss_pred             -C---CCCC-----HHHHHHHhcCC----------ceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCc--
Q psy8850         121 -N---GLIT-----LSQLEEKICSD----------TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK--  179 (397)
Q Consensus       121 -~---~~~d-----~~~l~~~i~~~----------~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~--  179 (397)
                       .   +.++     ++.+++++.+.          ++++++++|++ -|.+.+++.|+++|+++|++|++|+||+...  
T Consensus       278 ~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F  356 (755)
T PRK15029        278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF  356 (755)
T ss_pred             ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECcccccccc
Confidence             2   3455     89999988542          23888888754 5999999999999999999999999998322  


Q ss_pred             ---ccc--cc-----Cccccc-EEEecccc-ccCCCCceEEEEecC--CCC--ccccccccCCccccccCCCCchhHHHH
Q psy8850         180 ---IDI--NI-----QNYKVD-LMSFSAHK-IYGPKGIGALYIRRN--PRT--RIEAQIHGGGHEYGLRSGTLATHQIVG  243 (397)
Q Consensus       180 ---~~~--~~-----~~~~~d-~~~~s~~K-~~g~~g~g~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (397)
                         .+.  .+     ...++| +++.|.|| +.+....+++.++..  ...  ++...+      .-+.+++|++..+++
T Consensus       357 ~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l------~~~qSTSPSY~LmAS  430 (755)
T PRK15029        357 NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY------MMHATTSPLYAICAS  430 (755)
T ss_pred             CccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHH------HHHcCCCcHHHHHHH
Confidence               121  11     114788 99999999 777777788888654  111  222222      124456788889999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCc
Q psy8850         244 MGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEE  279 (397)
Q Consensus       244 l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~  279 (397)
                      +..+..++.. .-.+..++..+.+..+++.+.+ +++
T Consensus       431 LD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~-~~~  466 (755)
T PRK15029        431 NDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMAR-LYK  466 (755)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-ccc
Confidence            9888888764 4566777777888888888877 543

>PRK06062 hypothetical protein; Provisional

Probab=99.86  E-value=4.8e-19  Score=168.30  Aligned_cols=327  Identities=16%  Similarity=0.137  Sum_probs=199.8

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +..+|.|.+++.+++..... ..   .  . ...+...++.+.|+++.....+.++|++||++|++.+++... .+++ +
T Consensus        68 Gh~~p~v~~Ai~~q~~~~~~-~~---~--~-~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr-~~tg-r  138 (451)
T PRK06062         68 GHQHPKVVAAIQEQAARLCT-VA---P--A-HANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMAR-LHTG-R  138 (451)
T ss_pred             CCCCHHHHHHHHHHHHhcCC-cC---C--c-cCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHH-HhhC-C
Confidence            46789999999999876221 00   1  1 123455778888888875444589999999999999999644 4434 3


Q ss_pred             CEEEEcCCCChhhH-HHHHHHhhC---C-----cEEEEeccCCCCC------CC-------HHHHHHHhc----CCceEE
Q psy8850          87 KHIITVQTEHKSVL-DSIRKLEND---G-----FRVTYLKPKNNGL------IT-------LSQLEEKIC----SDTILV  140 (397)
Q Consensus        87 ~~vl~~~~~~~s~~-~~~~~~~~~---g-----~~v~~v~~~~~~~------~d-------~~~l~~~i~----~~~~~v  140 (397)
                      .+|+.....|++.. .+.......   .     ..+..++.+....      -|       ++++++++.    +++.+|
T Consensus       139 ~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAav  218 (451)
T PRK06062        139 PKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAI  218 (451)
T ss_pred             ceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence            56666665555554 443332110   0     0122222221110      12       577787774    457899


Q ss_pred             EEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEE
Q psy8850         141 SVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALY  209 (397)
Q Consensus       141 ~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~  209 (397)
                      +++.++...|.+.|    ++++.++|++||+++|+|++++ +|..    ..+.....+|+++++  | +.|+ ..+|.++
T Consensus       219 iiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~g--K~lggG~~Pigav~  296 (451)
T PRK06062        219 LLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFA--KGVNSGYVPLGGVA  296 (451)
T ss_pred             EEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeeec--hhhhcCCcCcEEEE
Confidence            99999999999888    8999999999999999999987 3222    112223468988876  9 6543 2578888


Q ss_pred             EecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCcEEEeCCCCC
Q psy8850         210 IRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ-KRLYNGLMESIEEIYINGDMNN  288 (397)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~  288 (397)
                      ++++..+.+...    ......+.+. +...+++..++|+.+.+  ..+.++..++. ++|++.|++......++.. -.
T Consensus       297 ~~~~i~~~~~~~----~~~~~~T~~g-npl~~Aaa~a~L~~l~~--~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~-vr  368 (451)
T PRK06062        297 ISEAIAATFADR----PYPGGLTYSG-HPLACAAAVATINAMEE--EGIVENAARIGAEVLGPGLRELAERHPSVGE-VR  368 (451)
T ss_pred             EcHHHHHHhccC----CCCCCCCCCC-CHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhcCCcEEe-Ee
Confidence            887654444321    0112223333 34555555688888765  34566666665 4666666551111111111 00


Q ss_pred             CCCceEEEEecCCC---------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC
Q psy8850         289 RIPHNLNISFNFIE---------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG  351 (397)
Q Consensus       289 ~~~~~~~~~~~~~~---------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~  351 (397)
                      ..+.++.+.+....               ...+...+.  |+.+.+                        .++.+|++++
T Consensus       369 G~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~------------------------~~~~lrl~pp  424 (451)
T PRK06062        369 GLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFV------------------------NGNRIHVVPP  424 (451)
T ss_pred             ccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEee------------------------cCCEEEEECC
Confidence            11445555553110               123333333  554432                        1378999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         352 RFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       352 ~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ..++++|||++++++.++++++..-
T Consensus       425 l~~t~~eid~~~~~l~~~l~~~~~~  449 (451)
T PRK06062        425 CTVTEDEVREGLAILDAALAVADAA  449 (451)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999887653

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.86  E-value=9.7e-19  Score=166.17  Aligned_cols=328  Identities=15%  Similarity=0.187  Sum_probs=203.2

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|.|.+++++++.... ....     .+...+...++.+.|++..+...+.+.|++||++|++.+++... .+++ 
T Consensus        67 lGh~~p~i~~Ai~~ql~~~~-~~~~-----~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr-~~tg-  138 (457)
T PRK05639         67 TGYSHPKLVKAVQEQVALIQ-HSMI-----GYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSK-FSTR-  138 (457)
T ss_pred             cCCCCHHHHHHHHHHHHhcc-cccc-----CccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHH-HhcC-
Confidence            34678999999999987621 1111     11112345678888888876444579999999999999999644 4434 


Q ss_pred             CCEEEEcCCCChhhH-HHHHHHhh-----CCc-----EEEEeccCCCCC--------CCH--------HHHHHHh-----
Q psy8850          86 GKHIITVQTEHKSVL-DSIRKLEN-----DGF-----RVTYLKPKNNGL--------ITL--------SQLEEKI-----  133 (397)
Q Consensus        86 g~~vl~~~~~~~s~~-~~~~~~~~-----~g~-----~v~~v~~~~~~~--------~d~--------~~l~~~i-----  133 (397)
                      +.+|+....+|++.. .+......     .+.     .+..+|.+....        -+.        +.+++.+     
T Consensus       139 r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~  218 (457)
T PRK05639        139 RPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVV  218 (457)
T ss_pred             CCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhc
Confidence            356666665555544 33332210     011     244555542110        022        3455544     


Q ss_pred             -cCCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC
Q psy8850         134 -CSDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP  202 (397)
Q Consensus       134 -~~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~  202 (397)
                       .+++.+|+++.++...|.+.|    ++++.++|++||+++|+|++++ +|..    ..+.....+|+++++  | +.|+
T Consensus       219 ~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~g--K~l~gG  296 (457)
T PRK05639        219 PPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFG--KGVASG  296 (457)
T ss_pred             CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEec--hhhcCC
Confidence             346889999999998898776    7899999999999999999987 2211    112223468999966  9 6655


Q ss_pred             CCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEE
Q psy8850         203 KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI  282 (397)
Q Consensus       203 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  282 (397)
                      .++|+++++++..+...     +.  ..++.+. +...+++..++++.+.+  ..+.++..++.++|++.|++......+
T Consensus       297 ~pi~av~~~~~i~~~~~-----~~--~~~T~~g-~p~~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~  366 (457)
T PRK05639        297 MGLSGVIGRKELMDLTS-----GS--ALLTPAA-NPVISAAAEATLEIIEE--ENLLKNALKVGEFIKKRLLEMKESFEV  366 (457)
T ss_pred             CcceeEEehHHHHhhcC-----CC--cccCCCc-CHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            66899999877655211     11  1123333 44455555578887765  456677777788888887762122222


Q ss_pred             eCCCCCCCCceEEEEecCC---C----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC
Q psy8850         283 NGDMNNRIPHNLNISFNFI---E----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF  353 (397)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~---~----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~  353 (397)
                      ..+- ...+.++.+.+...   .    ...+...+.  |+.+.+..                     ..++.||+.++..
T Consensus       367 ~~~V-rG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g---------------------~~~~~lr~~Ppl~  424 (457)
T PRK05639        367 IGDV-RGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSYG---------------------MFGNVIRITPPLV  424 (457)
T ss_pred             EEee-ccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecC---------------------CCCCEEEEeCCCc
Confidence            2211 11144555555321   1    123333333  66664320                     1137899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHh
Q psy8850         354 TTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       354 ~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +|++|+|+++++|.++++.+.+
T Consensus       425 it~~~id~~~~~l~~~l~~~~~  446 (457)
T PRK05639        425 ITKEIAEKGLEIMERAIKDALA  446 (457)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987743

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.86  E-value=5.3e-19  Score=167.12  Aligned_cols=324  Identities=16%  Similarity=0.151  Sum_probs=196.9

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      +..+|.+.+++.+++.... ....     .....+...++.+.|+++.... .+.++|++||++|++.+++... .++++
T Consensus        55 Gh~~p~v~~ai~~ql~~~~-~~~~-----~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr-~~tgr  127 (421)
T PRK09792         55 GHRHPDLVAAVEQQLQQFT-HTAY-----QIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIAR-AHTGR  127 (421)
T ss_pred             CCCCHHHHHHHHHHHHhcc-Cccc-----CccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHH-HhcCC
Confidence            4678999999999988622 1111     1111234456777777776532 2479999999999999999654 44343


Q ss_pred             CCEEEEcCCCChhhH-HHHHHHhh-----CCc-----EEEEeccCC--CCC---CCHHHHHHHhc-----CCceEEEEec
Q psy8850          86 GKHIITVQTEHKSVL-DSIRKLEN-----DGF-----RVTYLKPKN--NGL---ITLSQLEEKIC-----SDTILVSVML  144 (397)
Q Consensus        86 g~~vl~~~~~~~s~~-~~~~~~~~-----~g~-----~v~~v~~~~--~~~---~d~~~l~~~i~-----~~~~~v~~~~  144 (397)
                       .+|+....+|++.. .+......     .+.     .+..+|+..  .+.   -+++.+++.+.     +++++|+++.
T Consensus       128 -~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EP  206 (421)
T PRK09792        128 -PGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEP  206 (421)
T ss_pred             -CeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEcc
Confidence             56766666565554 33332110     011     133344432  111   13477888775     4678999999


Q ss_pred             ccCcccccc-c---HHHHHHHHHhcCcEEEEecccc-cCcc--ccccC--cccccEEEecccc-ccCCCCceEEEEecCC
Q psy8850         145 VNNEIGVIQ-P---ILEIGELCRSKGVIFHCDAAQA-VGKI--DINIQ--NYKVDLMSFSAHK-IYGPKGIGALYIRRNP  214 (397)
Q Consensus       145 ~~~~tG~~~-~---l~~i~~l~~~~gi~livD~a~~-~~~~--~~~~~--~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~  214 (397)
                      +++++|... |   +++|.++|++||+++|+|++++ ++..  .+...  ...+|++++|  | +.++..+|+++++++.
T Consensus       207 vq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~g--K~l~~G~pigav~~~~~i  284 (421)
T PRK09792        207 VQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMA--KSLAGGMPLSGVVGNANI  284 (421)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEee--hhhcCCCceEEEEEcHHH
Confidence            999999765 5   7899999999999999999987 2221  11111  2357876655  9 6554568999998766


Q ss_pred             CCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceE
Q psy8850         215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL  294 (397)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  294 (397)
                      .+.+.+...+      .+.+. +...+++..++++.+.++  +..++++++.+++.+.|++....+..+.. ....+.++
T Consensus       285 ~~~~~~~~~~------~T~~g-npl~~aaa~a~l~~l~~~--~~~~~~~~~g~~l~~~l~~l~~~~p~v~~-vrG~Gl~~  354 (421)
T PRK09792        285 MDAPAPGGLG------GTYAG-NPLAVAAAHAVLNIIDKE--SLCERANQLGQRLKNTLIDAKESVPAIAA-VRGLGSMI  354 (421)
T ss_pred             HhccCCCCcC------CCCCC-CHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHhCCCcce-ecccceEE
Confidence            5555432211      22233 334455555788877653  45556666666666666541111111211 11225667


Q ss_pred             EEEecCCC--------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHH
Q psy8850         295 NISFNFIE--------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK  364 (397)
Q Consensus       295 ~~~~~~~~--------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  364 (397)
                      .+.|++.+        ...+...+.  |+.+.+.   .                  ..++.||+.++..+++++|+++++
T Consensus       355 ~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~---g------------------~~~~~irl~P~l~i~~~ei~~~~~  413 (421)
T PRK09792        355 AAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTC---G------------------AYGNVIRFLYPLTIPDAQFDAAMK  413 (421)
T ss_pred             EEEecCCccCCcchHHHHHHHHHHHHCCcEEeec---C------------------CCCCEEEEeCCCcCCHHHHHHHHH
Confidence            77775321        123443333  6666321   0                  113889999999899999999999


Q ss_pred             HHHHHHH
Q psy8850         365 LLKMKVK  371 (397)
Q Consensus       365 ~l~~~~~  371 (397)
                      +|.+++.
T Consensus       414 ~l~~~l~  420 (421)
T PRK09792        414 ILQDALS  420 (421)
T ss_pred             HHHHHHh
Confidence            9998874

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.86  E-value=1.5e-18  Score=164.45  Aligned_cols=326  Identities=15%  Similarity=0.113  Sum_probs=197.6

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CC-cEEE-eCChhHHHHHHHHHhHhh
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PR-EIIW-TSGATESNNLAIKGAAHF   81 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~-~i~~-~~g~t~a~~~~l~~l~~~   81 (397)
                      .+..+|.|.+++++++.... ..+.    .. ...+...++.+.|++.+..+  .+ .++| ++||++|++.+++... .
T Consensus        53 lGh~~p~v~~ai~~ql~~~~-~~~~----~~-~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr-~  125 (425)
T PRK09264         53 YGHNNPVLKQALIDYLQRDG-ITHG----LD-MHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLAR-K  125 (425)
T ss_pred             CCCCCHHHHHHHHHHHHhcc-cccc----cc-cCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHH-H
Confidence            35678999999999987521 1111    11 11234566777777765322  22 4666 5899999999999644 4


Q ss_pred             hccCCCEEEEcCCCChhhH-HHHHHHhh----C--C---cEEEEeccCCCC---CCCHHHHHHHhc------CCceEEEE
Q psy8850          82 YKKRGKHIITVQTEHKSVL-DSIRKLEN----D--G---FRVTYLKPKNNG---LITLSQLEEKIC------SDTILVSV  142 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~-~~~~~~~~----~--g---~~v~~v~~~~~~---~~d~~~l~~~i~------~~~~~v~~  142 (397)
                      +++ +.+|+....+|++.. .+......    .  +   ..+..+|.+...   .-|++++++.+.      +++.+|++
T Consensus       126 ~tg-r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~  204 (425)
T PRK09264        126 VTG-RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIV  204 (425)
T ss_pred             hcC-CCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEE
Confidence            434 356666666565554 33332211    0  1   134455554211   126788888875      24689999


Q ss_pred             ecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCc----cccccCcccccEEEeccccccCC--CCceEEEEe
Q psy8850         143 MLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHKIYGP--KGIGALYIR  211 (397)
Q Consensus       143 ~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~----~~~~~~~~~~d~~~~s~~K~~g~--~g~g~~~~~  211 (397)
                      +.+....|.+.+    +++|.++|++||+++|+|++++ +|.    ...+...+.+|++++|  |.+|+  ..+|+++++
T Consensus       205 Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~--K~l~~~G~pigav~~~  282 (425)
T PRK09264        205 ETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLS--KSISGYGLPMALVLIK  282 (425)
T ss_pred             ecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEec--cccCCCccceEEEEEc
Confidence            999988887654    7999999999999999999986 221    1223233468888776  94443  336999998


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCC
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMN  287 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al-~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~  287 (397)
                      ++. ..+.....+      ...+ .+....++..+++ +.+.+  .++.++++++.++|++.|++.   .+.+ +...  
T Consensus       283 ~~i-~~~~~~~~~------~T~~-gnp~~~aaa~a~l~~~~~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~-~~~v--  349 (425)
T PRK09264        283 PEL-DVWKPGEHN------GTFR-GNNLAFVTATAALEEYWSD--DAFEKEVKAKGELVRERLEEIAAKYPGL-GAEV--  349 (425)
T ss_pred             hhh-hccCCCccC------CCCC-CCHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHhCCCc-eecc--
Confidence            764 232221111      1122 2334444454666 44333  356777777777777777651   2222 1111  


Q ss_pred             CCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHH
Q psy8850         288 NRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK  364 (397)
Q Consensus       288 ~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  364 (397)
                      ...+.++.+.++... ...+...+.  |+.+.+...                     ....||++++..+++++|+++++
T Consensus       350 rg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~---------------------~~~~lr~~p~l~~t~~ei~~~~~  408 (425)
T PRK09264        350 RGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGP---------------------EDEVVKLLPPLTIDEEELEEGLD  408 (425)
T ss_pred             eecccEEEEEecChHHHHHHHHHHHHCCCEEeccCC---------------------CCCEEEEeCCCCCCHHHHHHHHH
Confidence            112455567765321 334555544  776654210                     12789999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy8850         365 LLKMKVKKLRE  375 (397)
Q Consensus       365 ~l~~~~~~~~~  375 (397)
                      +|.++++++.+
T Consensus       409 ~l~~~l~~~~~  419 (425)
T PRK09264        409 ILEEAVAEVLA  419 (425)
T ss_pred             HHHHHHHHHHh
Confidence            99999987743

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.86  E-value=8e-19  Score=165.43  Aligned_cols=323  Identities=14%  Similarity=0.096  Sum_probs=197.7

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEE-eCChhHHHHHHHHHhHhh
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--P-REIIW-TSGATESNNLAIKGAAHF   81 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~-~~i~~-~~g~t~a~~~~l~~l~~~   81 (397)
                      .+..+|.|.+++.+++.... ..    +.. ....+...++.+.|++....+  . +.++| ++||++|++.+++... .
T Consensus        49 lGh~~p~v~~ai~~ql~~~~-~~----~~~-~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr-~  121 (412)
T TIGR02407        49 YGHNNPKLKQALIDYLADDG-II----HSL-DMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLAR-K  121 (412)
T ss_pred             CCCCCHHHHHHHHHHHhhcc-ce----ecc-ccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHh-h
Confidence            35678999999999987521 11    111 111344566777777764322  1 24666 5899999999999654 4


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhh-----C--C---cEEEEeccCCCCC---CCHHHHHHHhc------CCceEEEE
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLEN-----D--G---FRVTYLKPKNNGL---ITLSQLEEKIC------SDTILVSV  142 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~-----~--g---~~v~~v~~~~~~~---~d~~~l~~~i~------~~~~~v~~  142 (397)
                      +++ +.+|+....+|++..........     .  +   ..+..+|.+....   -+++.+++.+.      +++.+|++
T Consensus       122 ~tg-r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~  200 (412)
T TIGR02407       122 VTG-RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVIL  200 (412)
T ss_pred             hcC-CCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEe
Confidence            433 45677666666555443332211     0  1   1334445432111   24677888875      35689999


Q ss_pred             ecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCc----cccccCcccccEEEecccc-ccC-CCCceEEEEe
Q psy8850         143 MLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHK-IYG-PKGIGALYIR  211 (397)
Q Consensus       143 ~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~----~~~~~~~~~~d~~~~s~~K-~~g-~~g~g~~~~~  211 (397)
                      +.+++++|.+.+    +++|.++|++||+++|+|++++ +|.    ...+...+.+|++++|  | +.+ ...+|+++++
T Consensus       201 Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~--K~lg~~G~pigav~~~  278 (412)
T TIGR02407       201 ETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLS--KSISGYGLPLALTLIK  278 (412)
T ss_pred             ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEec--hhccCCccceeEEEEc
Confidence            999999998654    7899999999999999999986 332    1223344578988776  9 443 3348999998


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCC
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMN  287 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~  287 (397)
                      ++. ..+.....+      ... ..+...+++..++++. +.+  .++.++..++.+++++.|+..   ++++... .+ 
T Consensus       279 ~~~-~~~~~~~~~------~T~-~gnpl~~aaa~a~l~~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~-vr-  346 (412)
T TIGR02407       279 PEL-DVWKPGEHN------GTF-RGNNLAFVTATAALEYYWSD--DAFEKAVQRKSEIIQERLDRIVAEYPELIKQ-VR-  346 (412)
T ss_pred             hhh-hccCCCccC------CCC-CccHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHhhCCCceEe-ee-
Confidence            764 333221111      112 2344445555577874 443  345666666667776666541   3322211 11 


Q ss_pred             CCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHH
Q psy8850         288 NRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK  364 (397)
Q Consensus       288 ~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  364 (397)
                       ..+.++.+.++... ...+...+.  |+.+.+..                     ..++.||++++..++++|++++++
T Consensus       347 -g~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~---------------------~~~~~lr~~p~l~~t~~~i~~~~~  404 (412)
T TIGR02407       347 -GRGLMQGIECGDGDLAGKIAKAAFENGLIIETSG---------------------PNDEVIKLLPPLTIDEETLQQGLD  404 (412)
T ss_pred             -cceeEEEEEecChHHHHHHHHHHHHCCCEEeccC---------------------CCCCEEEEECCCCCCHHHHHHHHH
Confidence             12456677776422 345555554  77775421                     012789999999999999999999


Q ss_pred             HHHHHHHH
Q psy8850         365 LLKMKVKK  372 (397)
Q Consensus       365 ~l~~~~~~  372 (397)
                      +|.+++++
T Consensus       405 ~l~~~l~~  412 (412)
T TIGR02407       405 ILEQAVEE  412 (412)
T ss_pred             HHHHHHhC
Confidence            99998753

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.86  E-value=9.1e-19  Score=166.29  Aligned_cols=326  Identities=16%  Similarity=0.193  Sum_probs=199.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .+..+|.|.+++.+++.... ....     .+...+...++.+.|++++... .+.++|++||++|++.+++.. +.+++
T Consensus        56 lGH~~p~v~~Ai~~ql~~~~-~~~~-----~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklA-r~~tg  128 (445)
T PRK08593         56 VGHAPPRVVEAIKAQADKFI-HYTP-----AYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFA-RAYTG  128 (445)
T ss_pred             CCCCCHHHHHHHHHHHHhcc-Cccc-----cccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHH-HHhhC
Confidence            34678999999999987622 1111     0112345677888888887543 247999999999999999954 34444


Q ss_pred             CCCEEEEcCCCChhh-HHHHHHHhhC----------CcEEEEeccCCCC-----CCC-------HHHHHHHhc-----CC
Q psy8850          85 RGKHIITVQTEHKSV-LDSIRKLEND----------GFRVTYLKPKNNG-----LIT-------LSQLEEKIC-----SD  136 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~-~~~~~~~~~~----------g~~v~~v~~~~~~-----~~d-------~~~l~~~i~-----~~  136 (397)
                      + .+|+.....|++. ..++......          ...+..+|.++..     ..+       ++++++.+.     ++
T Consensus       129 r-~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (445)
T PRK08593        129 R-PYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADE  207 (445)
T ss_pred             C-CeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCc
Confidence            4 4566555555554 4443322100          0123344443211     011       244554442     56


Q ss_pred             ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCCCCce
Q psy8850         137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGPKGIG  206 (397)
Q Consensus       137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g  206 (397)
                      +.+|+++.+++..|.+.|    ++++.++|++||+++|+|+++. +|...    .+.....+|+++++  | +.|+..+|
T Consensus       208 iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~g--K~l~~G~p~g  285 (445)
T PRK08593        208 VACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFG--KSLAGGMPMS  285 (445)
T ss_pred             eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeec--ccccCCcccE
Confidence            889999999999998876    8999999999999999999984 43221    12223357888766  9 55444478


Q ss_pred             EEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CcEEEeCC
Q psy8850         207 ALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI-EEIYINGD  285 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~  285 (397)
                      +++++++..+.+....      ..+..+ .+...+++..++++.+.+  .++.++..++.++|++.|++ + ....++..
T Consensus       286 av~~~~~i~~~~~~~~------~~~T~~-~~pl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~-l~~~~~~v~~  355 (445)
T PRK08593        286 AIVGRKEIMESLEAPA------HLFTTG-ANPVSCAAALATIDMIED--ESLLQRSAEKGEYARKRFDQ-WVSKYNFVGD  355 (445)
T ss_pred             EEEEcHHHHhhhccCC------CCCCCC-CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-HHhcCCcEEE
Confidence            9999876655443211      112333 344555656688888765  35677777777788777765 3 11111211


Q ss_pred             CCCCCCceEEEEecCC------C---hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850         286 MNNRIPHNLNISFNFI------E---GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT  354 (397)
Q Consensus       286 ~~~~~~~~~~~~~~~~------~---~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~  354 (397)
                      - ...+.++.+.+...      +   ...+...+.  |+.+.+.                       ..+.+|+.++..+
T Consensus       356 v-rG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-----------------------~~~~lr~~p~l~~  411 (445)
T PRK08593        356 V-RGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV-----------------------AGNVLRFQPPLVI  411 (445)
T ss_pred             E-eccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc-----------------------CCCEEEEECCCcc
Confidence            0 11133334444211      1   123444443  6655321                       1278999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHh
Q psy8850         355 TEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       355 ~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      |++|||++++++.++++++.+
T Consensus       412 t~~~id~~~~~l~~~l~~~~~  432 (445)
T PRK08593        412 TYEQLDTALNTIEQAFTALEA  432 (445)
T ss_pred             CHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999988755

>KOG1383|consensus

Probab=99.86  E-value=5.6e-19  Score=158.25  Aligned_cols=312  Identities=19%  Similarity=0.181  Sum_probs=218.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCc-EEEeCChhHHHHHHHHHhHhhhcc-C---CCEEEEcCCCChhhHHHHHHHhhCCcEEE
Q psy8850          40 EKAIEKARNEVAQLIYADPRE-IIWTSGATESNNLAIKGAAHFYKK-R---GKHIITVQTEHKSVLDSIRKLENDGFRVT  114 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~-i~~~~g~t~a~~~~l~~l~~~~~~-~---g~~vl~~~~~~~s~~~~~~~~~~~g~~v~  114 (397)
                      .....++-..++.+++.+++. -..|.|+|+++.+..+........ +   ...++++...|.++..+.+.+   ++++.
T Consensus       119 ~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf---~v~l~  195 (491)
T KOG1383|consen  119 RKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYF---EVELR  195 (491)
T ss_pred             HHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhE---EEEEE
Confidence            456677888999999997553 556779999855555544332212 1   256777766666665555555   99999


Q ss_pred             EeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh-cCcEEEEecccccCcc--------cccc
Q psy8850         115 YLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-KGVIFHCDAAQAVGKI--------DINI  184 (397)
Q Consensus       115 ~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~-~gi~livD~a~~~~~~--------~~~~  184 (397)
                      .||++ .++.+|+..+...+.++|.+++.+.+++|+|.+.|+++|.++.-+ +++++++|++.+....        ++|+
T Consensus       196 ~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdF  275 (491)
T KOG1383|consen  196 EVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDF  275 (491)
T ss_pred             eeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCcccccc
Confidence            99999 688999999999999999999999999999999999999999999 9999999999884443        4677


Q ss_pred             CcccccEEEecccc-ccCCCCceEEEEecCCCCcc----ccccccCCccccccCCCCchhHHHHHHH-HHHHHHHHHHHH
Q psy8850         185 QNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI----EAQIHGGGHEYGLRSGTLATHQIVGMGE-AFRLARIEMKEE  258 (397)
Q Consensus       185 ~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~-al~~~~~~~~~~  258 (397)
                      ...++..++.+.|| .+.|.|+|+++-+.+.+..-    .....|+.....-..|+.+..++++.++ .+.+..+|+.+.
T Consensus       276 r~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~  355 (491)
T KOG1383|consen  276 RVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYREN  355 (491)
T ss_pred             CCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHH
Confidence            77788999999999 78899999998876543322    2223333332222223333344444444 456667899999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCCcEecccCccCCCCCChhhHHHhhCCC
Q psy8850         259 LKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCN  338 (397)
Q Consensus       259 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~g~~  338 (397)
                      .+++.+.+..|++.+++ +.++.+.+.+.   -.+..+.-...+-.++.+.|+.    -|           |.+.++.+.
T Consensus       356 ~~~ive~~~~l~egie~-i~~i~i~gkp~---vs~~~~~s~~~~i~elsd~l~~----~G-----------W~lnalq~P  416 (491)
T KOG1383|consen  356 TQNIVETARKLREGIEN-IKGIKIVGKPL---VSFILFGSNDVNIFELSDLLRK----KG-----------WILNALQFP  416 (491)
T ss_pred             HHHHHHHHHHHHHhhhc-cccceecCCCc---EEEEEccCCccchhhhhHHHHh----cC-----------cCccccCCC
Confidence            99999999999999999 99999998743   1122222222333444444431    11           233333322


Q ss_pred             ccccCceEEEeeCCCCCHHH-HHHHHHHHHHHHHHHHhcCc
Q psy8850         339 DELAHSSIRFTIGRFTTEKE-IDFTIKLLKMKVKKLRELSP  378 (397)
Q Consensus       339 ~~~~~~~iRi~~~~~~~~~~-i~~~~~~l~~~~~~~~~~~~  378 (397)
                           ..+.+++......++ .|+++..|.++++++.+.-+
T Consensus       417 -----~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~p~  452 (491)
T KOG1383|consen  417 -----AAIHICVTRVHAREDVADRFVADIRKVVEELKSLPE  452 (491)
T ss_pred             -----CceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhCCC
Confidence                 467777775544444 68999999999999876543

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.86  E-value=1.8e-18  Score=163.87  Aligned_cols=321  Identities=13%  Similarity=0.103  Sum_probs=194.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      +..+|.|.+++++++.... ....     .....+...++.+.|++++.. ..+.++|++||++|++.+++.. +.++++
T Consensus        48 Gh~~p~v~~a~~~ql~~~~-~~~~-----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr  120 (420)
T TIGR00700        48 GHSHPRVVDAVRTQVAEFT-HTCF-----MVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYTGR  120 (420)
T ss_pred             CCCCHHHHHHHHHHHHhcc-Cccc-----cccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhcCC
Confidence            4678999999999997622 1111     111123455677778887742 2357999999999999999954 444444


Q ss_pred             CCEEEEcCCCChhhH-HHHHHHhh-----CCc-----EEEEeccCCCCC-------C----CHHHHHHHhc-----CCce
Q psy8850          86 GKHIITVQTEHKSVL-DSIRKLEN-----DGF-----RVTYLKPKNNGL-------I----TLSQLEEKIC-----SDTI  138 (397)
Q Consensus        86 g~~vl~~~~~~~s~~-~~~~~~~~-----~g~-----~v~~v~~~~~~~-------~----d~~~l~~~i~-----~~~~  138 (397)
                       .+|+....+|++.. .+......     .+.     .+..+|......       .    +++.+++.+.     +++.
T Consensus       121 -~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA  199 (420)
T TIGR00700       121 -PGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVA  199 (420)
T ss_pred             -CcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEE
Confidence             45665555555544 44332111     011     123333321100       0    2456776652     4678


Q ss_pred             EEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccccC-cc----ccccCcccccEEEecccc-ccCCCCceEE
Q psy8850         139 LVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVG-KI----DINIQNYKVDLMSFSAHK-IYGPKGIGAL  208 (397)
Q Consensus       139 ~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~-~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~  208 (397)
                      +|+++.++..+|.+.|    +++|.++|++||+++|+|++++.. ..    ..+.....+|++++  +| +.++..+|++
T Consensus       200 avi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~l--sK~l~~G~pig~v  277 (420)
T TIGR00700       200 ALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITT--AKSLADGLPLSGV  277 (420)
T ss_pred             EEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEe--eccccCCcceEEE
Confidence            9999999999998877    789999999999999999998722 21    11222235787765  59 5544458999


Q ss_pred             EEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCC
Q psy8850         209 YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGD  285 (397)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~  285 (397)
                      +++++....+.....+      ...+. +...+++..++++.+.+  ..+.++..++.+++++.|++.   ++.+..+..
T Consensus       278 ~~~~~i~~~~~~~~~~------~T~~~-~pl~~aaa~a~l~~l~~--~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg  348 (420)
T TIGR00700       278 TGRAEIMDAPAPGGLG------GTYAG-NPLACAAALAVLAIIES--EGLIERARQIGRLVTDRLTTLKAVDPRIGDVRG  348 (420)
T ss_pred             EecHHHHhhcCCCCcC------CCCCc-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhCCCEEEeec
Confidence            9987765555432211      22233 34445555577887654  234445555555555555441   333322222


Q ss_pred             CCCCCCceEEEEecCC----C----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850         286 MNNRIPHNLNISFNFI----E----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT  355 (397)
Q Consensus       286 ~~~~~~~~~~~~~~~~----~----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  355 (397)
                      .    +.++.+.+.+.    +    ...+...+.  ||.+.++..+                     +++|||+++..++
T Consensus       349 ~----G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f---------------------~~~lRl~p~l~~~  403 (420)
T TIGR00700       349 L----GAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF---------------------GNIIRFLPPLTIG  403 (420)
T ss_pred             c----ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC---------------------CCEEEEECCCCcC
Confidence            1    45556655321    1    123443333  7888765321                     2789999988789


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8850         356 EKEIDFTIKLLKMKVK  371 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~~  371 (397)
                      ++++++++++|.+++.
T Consensus       404 ~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       404 DELLSEGLDILCAILA  419 (420)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998863

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.86  E-value=6.8e-19  Score=167.00  Aligned_cols=330  Identities=14%  Similarity=0.104  Sum_probs=202.4

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|.+.+++++++......+   ...   ...+...++.+.|++++....+.++|++||++|++.+++.......   
T Consensus        64 Gh~~p~v~~ai~~ql~~l~~~~---~~~---~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g  137 (445)
T PRK09221         64 GHGRPEIVEAVARQAATLDYAP---AFQ---MGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARG  137 (445)
T ss_pred             CCCCHHHHHHHHHHHHhccCcc---ccc---cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence            4678999999999987632111   111   1123456678888888754345799999999999999996554321   


Q ss_pred             -cCCCEEEEcCCCChhhHHHHHHHhh-----CC-----cEEEEeccCC---C--CC--------CCHHHHHHHhc----C
Q psy8850          84 -KRGKHIITVQTEHKSVLDSIRKLEN-----DG-----FRVTYLKPKN---N--GL--------ITLSQLEEKIC----S  135 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~~~~~~~~-----~g-----~~v~~v~~~~---~--~~--------~d~~~l~~~i~----~  135 (397)
                       ..+.+|+....+|++.....-.+..     .+     ..+..+|...   .  ..        -..+++++.+.    +
T Consensus       138 ~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  217 (445)
T PRK09221        138 QGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDAS  217 (445)
T ss_pred             CCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCC
Confidence             1235677777766655432221110     00     1123333321   0  00        01356777764    4


Q ss_pred             CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CC
Q psy8850         136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KG  204 (397)
Q Consensus       136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g  204 (397)
                      ++.+|+++.+++..|.+.|    ++++.++|++||+++|+|++++ +|..    ..+.....+|++++|  | +.|+ ..
T Consensus       218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~g--K~l~gG~~P  295 (445)
T PRK09221        218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFA--KGLTNGAIP  295 (445)
T ss_pred             cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEec--cccccCccc
Confidence            6789999999999999888    8999999999999999999985 4421    122223457988877  9 5432 34


Q ss_pred             ceEEEEecCCCCcccccccc-CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEe
Q psy8850         205 IGALYIRRNPRTRIEAQIHG-GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN  283 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  283 (397)
                      +|.++++++..+.+...... ......++.+. +...+++..++++.+.+  ..+.++..++.++|++.|++ +.....+
T Consensus       296 i~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~-~pl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~~-l~~~~~v  371 (445)
T PRK09221        296 MGAVIASDEIYDAFMQGPEYAIEFFHGYTYSA-HPVACAAGLATLDIYRE--EDLFERAAELAPYFEDAVHS-LKGLPHV  371 (445)
T ss_pred             ceeeEEcHHHHHhhccCcccccccccccCCCc-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHh-hccCCCE
Confidence            78888886654443211000 00112233333 33445555578888765  35678889999999998887 5322211


Q ss_pred             CCCCCCCCceEEEEecCC------ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850         284 GDMNNRIPHNLNISFNFI------EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT  355 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~------~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  355 (397)
                      .+ -...+.+..+.+...      ....+.+.+.  |+.+..+                        ++.+||+++..++
T Consensus       372 ~~-vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~------------------------~~~lr~~Ppl~~t  426 (445)
T PRK09221        372 ID-IRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT------------------------GDTIALSPPLIIE  426 (445)
T ss_pred             EE-EecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec------------------------CCEEEEECCccCC
Confidence            11 011133334444321      1234555443  6666432                        2689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8850         356 EKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~~~~  373 (397)
                      ++|||+++++|++++.++
T Consensus       427 ~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        427 KAQIDELVDALGDALRAV  444 (445)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999998764

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.85  E-value=8e-19  Score=166.72  Aligned_cols=331  Identities=11%  Similarity=0.081  Sum_probs=204.3

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|.|.+++++++..... ...  .  + ...+...++.+.|+++.+...+.++|++||++|++.+++.....+.  
T Consensus        68 lGh~~p~v~~Ai~~ql~~~~~-~~~--~--~-~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~r  141 (453)
T PRK06943         68 FGHANPRINAALKDQLDTLEH-AML--A--G-CTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNR  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHhcCC-ccc--c--c-cCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence            356789999999999976321 110  0  0 1123456788888888764445799999999999999997643221  


Q ss_pred             --cCCCEEEEcCCCChhhHHHHHHHhh-C----C-----cEEEEeccCCC-CC-----------CCHHHHHHHhc---CC
Q psy8850          84 --KRGKHIITVQTEHKSVLDSIRKLEN-D----G-----FRVTYLKPKNN-GL-----------ITLSQLEEKIC---SD  136 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~~~~~~~~~-~----g-----~~v~~v~~~~~-~~-----------~d~~~l~~~i~---~~  136 (397)
                        ..+.+|+....+|++.....-.+.. .    +     ..+..+|.... +.           -+++++++.+.   ++
T Consensus       142 g~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  221 (453)
T PRK06943        142 GRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGK  221 (453)
T ss_pred             CCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence              1246677777766665433222110 0    0     11233433221 10           12467777774   46


Q ss_pred             ceEEEEec-ccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CC
Q psy8850         137 TILVSVML-VNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KG  204 (397)
Q Consensus       137 ~~~v~~~~-~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g  204 (397)
                      +.+|+++. ++...|.+.|    ++.+.++|++||+++|+|+++. +|..-    .+.....+|+++++  | +.|+ ..
T Consensus       222 iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~g--Kgl~gG~~P  299 (453)
T PRK06943        222 IAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLS--KGISGGYLP  299 (453)
T ss_pred             eEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeee--hhhccCccc
Confidence            88999998 4888888765    7899999999999999999986 43321    12233469999998  9 6554 35


Q ss_pred             ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850         205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  284 (397)
                      +|.++++++..+.+......+......+.+ .|...+++..++|+.+.+  +++.++..++.++|.+.|++ +.....+.
T Consensus       300 i~av~~~~ei~~~~~~~~~~~~~~~~~T~~-gnpl~~aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~~-l~~~~~v~  375 (453)
T PRK06943        300 LSLVLSRDAIFAAFYDDDVTRGFLHSHSYT-GNPLACRAALATLDLFAE--DDVLARNARKSARLRAALAP-LAAHPQVR  375 (453)
T ss_pred             ceEEEEcHHHHHhhcccCccCCccCCCCCC-CCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HhcCCCEE
Confidence            899999877655443210000001112222 244556666688888765  45667777788888888876 42211111


Q ss_pred             CCCCCCCceEEEEecC-CC-----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850         285 DMNNRIPHNLNISFNF-IE-----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE  356 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~-~~-----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~  356 (397)
                      . -...+.++.+.+.. .+     ...+...+.  |+.+.+.                        ++.+||+++..+|+
T Consensus       376 ~-vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~------------------------g~~l~~~Ppl~it~  430 (453)
T PRK06943        376 H-LRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPI------------------------GTTVYLMPPYVLDD  430 (453)
T ss_pred             e-EeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEeCCCcCCH
Confidence            1 11224555666641 11     122333333  6665431                        25699999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy8850         357 KEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       357 ~~i~~~~~~l~~~~~~~  373 (397)
                      +|||+++++|.++++++
T Consensus       431 ~eid~~~~~l~~al~~~  447 (453)
T PRK06943        431 DEIAWLAERTRATLDAT  447 (453)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999875

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=2.6e-18  Score=162.40  Aligned_cols=319  Identities=16%  Similarity=0.126  Sum_probs=197.3

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      +..+|.+.+++.+++.... ....     .....+...++.+.++++... ..+.++|++||++|++.+++... .++++
T Consensus        55 Gh~~p~v~~ai~~ql~~~~-~~~~-----~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr-~~tgr  127 (421)
T PRK06777         55 GHRHPKVVAAVRQQLDQFT-HTAY-----QIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIAR-AYTGR  127 (421)
T ss_pred             CCCCHHHHHHHHHHHhhcc-cccc-----cccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHH-HhhCC
Confidence            4678999999999998632 1111     111123345677778887653 23579999999999999999654 44343


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhC--Cc---------EEEEeccCCC--C---CCCHHHHHHHhc-----CCceEEEEec
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLEND--GF---------RVTYLKPKNN--G---LITLSQLEEKIC-----SDTILVSVML  144 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~--g~---------~v~~v~~~~~--~---~~d~~~l~~~i~-----~~~~~v~~~~  144 (397)
                       .+|+....+|++.......+...  ..         .+..++.++.  +   .-+++.+++.+.     +++.+|+++.
T Consensus       128 -~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Ep  206 (421)
T PRK06777        128 -PGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEP  206 (421)
T ss_pred             -CeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence             56766666665554333322110  01         1222232211  1   113566777764     3578999999


Q ss_pred             ccCccccc-cc---HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCCCCceEEEEecCC
Q psy8850         145 VNNEIGVI-QP---ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNP  214 (397)
Q Consensus       145 ~~~~tG~~-~~---l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~  214 (397)
                      +++..|.. .|   +++|.++|++||+++|+|++++. +..    ........+|++++  +| +.++..+|+++++++.
T Consensus       207 v~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~--sK~l~~G~pigav~~~~~i  284 (421)
T PRK06777        207 IQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITM--AKSLGGGMPISAVVGRAEV  284 (421)
T ss_pred             ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEee--ehhhcCCCceEEEEEcHHH
Confidence            99988864 44   78999999999999999999872 211    11112235787755  59 5443448999998766


Q ss_pred             CCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CcEEEeCCCCCCC
Q psy8850         215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI----EEIYINGDMNNRI  290 (397)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~  290 (397)
                      .+.+.+...      ....+ .+...+++..++++.+.+  +++.++.+++.+++++.|++ +    +.+..+...    
T Consensus       285 ~~~~~~~~~------~~T~~-~~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~-l~~~~~~i~~vrg~----  350 (421)
T PRK06777        285 MDAPAPGGL------GGTYA-GNPLAVAAALAVLDVIAE--EKLCQRALILGAHLVEVLEK-AKASCPAIVDIRAR----  350 (421)
T ss_pred             HhccCCCCC------CCCCC-cCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-HHHhCCCeEEecCc----
Confidence            555543221      12233 344555666678887665  56778888888888888876 3    322222221    


Q ss_pred             CceEEEEecCC----ChHHHHHHh----C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHH
Q psy8850         291 PHNLNISFNFI----EGESLLMAI----K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID  360 (397)
Q Consensus       291 ~~~~~~~~~~~----~~~~~~~~l----~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~  360 (397)
                      +.++.+.+...    +..++...+    .  |+.+.++..+                     ++++||+++...++++++
T Consensus       351 G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~---------------------g~~lr~~ppl~i~~~~i~  409 (421)
T PRK06777        351 GSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVH---------------------GNVIRFLYPLTIPDAQFS  409 (421)
T ss_pred             eEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCC---------------------CCEEEEeCCCCCCHHHHH
Confidence            33444445321    122233222    2  7877665211                     268999999889999999


Q ss_pred             HHHHHHHHHH
Q psy8850         361 FTIKLLKMKV  370 (397)
Q Consensus       361 ~~~~~l~~~~  370 (397)
                      +++++|.+++
T Consensus       410 ~~~~~l~~~l  419 (421)
T PRK06777        410 KALNILTRLL  419 (421)
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.85  E-value=4.7e-19  Score=172.30  Aligned_cols=226  Identities=16%  Similarity=0.089  Sum_probs=171.5

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHH-HHHHhhCCcEEEEeccCC
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-IRKLENDGFRVTYLKPKN  120 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~-~~~~~~~g~~v~~v~~~~  120 (397)
                      .+.+.++.+|+.||++ ...++++|+|.+|.+++.+++    ++||+|++..++|.|...+ +.+.   |+++++++...
T Consensus       175 ~i~eAq~~AA~~fgAd-~tyFlvNGTS~gn~a~i~a~~----~~Gd~VLvdRN~HKSv~hgaLiLs---Ga~PVYl~P~~  246 (720)
T PRK13578        175 AAKDAQKHAAKVFNAD-KTYFVLNGTSASNKVVTNALL----TPGDLVLFDRNNHKSNHHGALIQA---GATPVYLETAR  246 (720)
T ss_pred             HHHHHHHHHHHHhCCC-ceEEEeCChhHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHHHHc---CCeEEEeeccc
Confidence            5788999999999998 468999999999999999988    8999999999999999985 7777   99999987652


Q ss_pred             --C---CCCCHHH-----HHHHhcCC----------ceEEEEecccCcccccccHHHHHHH-HHhcCcEEEEecccccCc
Q psy8850         121 --N---GLITLSQ-----LEEKICSD----------TILVSVMLVNNEIGVIQPILEIGEL-CRSKGVIFHCDAAQAVGK  179 (397)
Q Consensus       121 --~---~~~d~~~-----l~~~i~~~----------~~~v~~~~~~~~tG~~~~l~~i~~l-~~~~gi~livD~a~~~~~  179 (397)
                        .   +.++.+.     ++++|.+.          .+++++++++ .-|.+++++.|+++ ++.++ +|++|+||+...
T Consensus       247 n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~  324 (720)
T PRK13578        247 NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNARQVVDKIGHLCD-YILFDSAWVGYE  324 (720)
T ss_pred             cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHHHHHHHhhccCC-cEEEeCcchhhh
Confidence              2   3566555     88888654          4788888775 45999999999998 68888 999999998322


Q ss_pred             --cc------cccCccccc----EEEecccc-ccCCCCceEEEEecCCCC---------ccccccccCCccccccCCCCc
Q psy8850         180 --ID------INIQNYKVD----LMSFSAHK-IYGPKGIGALYIRRNPRT---------RIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       180 --~~------~~~~~~~~d----~~~~s~~K-~~g~~g~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  237 (397)
                        .+      ......++|    +++.|.|| +.+....+++.+++..+.         ++...+      .-+.+++|+
T Consensus       325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al------~m~qSTSPs  398 (720)
T PRK13578        325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAF------MLHASTSPF  398 (720)
T ss_pred             ccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHH------HHHcCCChH
Confidence              11      111234788    99999999 777777888888764432         122111      113456777


Q ss_pred             hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hhhcCcEEEeC
Q psy8850         238 THQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGL-MESIEEIYING  284 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~  284 (397)
                      +..++++..+...+.. .-..+.+...+.+..+++.| +. .+++.++.
T Consensus       399 Y~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~-~~~~~~~~  446 (720)
T PRK13578        399 YPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILAR-CKLIRPFI  446 (720)
T ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHh-CCCeeecc
Confidence            8888888777777654 45667777888888888888 44 77777664

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=1.9e-18  Score=164.49  Aligned_cols=328  Identities=13%  Similarity=0.117  Sum_probs=199.4

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|.|.+++.+++..... ..+      ....+...++.+.|+++++...+.++|++||++|++.+++... .++++
T Consensus        85 lGh~~p~v~~Ai~~ql~~~~~-~~~------~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr-~~tgr  156 (459)
T PRK06082         85 LGYGHPHVIEKVKEQMAKLPF-SPR------RFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLAR-HITGN  156 (459)
T ss_pred             cCCCCHHHHHHHHHHHHhCCC-ccC------ccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHH-HhcCC
Confidence            345789999999999976321 111      1123456788888999886444589999999999999999544 44344


Q ss_pred             CCEEEEcCCCChh-hHHHHHHHhhC----C-----cEEEEeccCCCC-----CC------CHHHHHHHhc--CCceEEEE
Q psy8850          86 GKHIITVQTEHKS-VLDSIRKLEND----G-----FRVTYLKPKNNG-----LI------TLSQLEEKIC--SDTILVSV  142 (397)
Q Consensus        86 g~~vl~~~~~~~s-~~~~~~~~~~~----g-----~~v~~v~~~~~~-----~~------d~~~l~~~i~--~~~~~v~~  142 (397)
                       .+|+.....|++ +..++......    +     ..+..+|.....     ..      +++.+++.+.  .++.+|++
T Consensus       157 -~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIv  235 (459)
T PRK06082        157 -FKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIA  235 (459)
T ss_pred             -CEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence             555555554444 44444322110    0     112333322110     01      1355777775  36789999


Q ss_pred             ecccCccccccc---HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCC-CCceEEEEec
Q psy8850         143 MLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRR  212 (397)
Q Consensus       143 ~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~  212 (397)
                      +.+++..+.+.|   ++++.++|++||+++|+|++++. |..    ........+|+++++  | +.|+ ..+|.+++++
T Consensus       236 EPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~g--Kgl~gG~~P~~av~~~~  313 (459)
T PRK06082        236 EAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIG--KGLGGGLVPIAAMITKD  313 (459)
T ss_pred             CCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEec--ccccCCCCcceEEEEcH
Confidence            988876444455   79999999999999999999872 221    112223468999865  9 6554 2578888886


Q ss_pred             CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCc
Q psy8850         213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH  292 (397)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  292 (397)
                      +......    . .... ++.+. +...+++..++++.+.+  +++.++..++.++|++.|++......++..- ...+.
T Consensus       314 ~i~~~~~----~-~~~~-~T~~g-npl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rG~Gl  383 (459)
T PRK06082        314 KYNTAAQ----I-SLGH-YTHEK-SPLGCAAALATIEVIEQ--EGLLEKVKADSQFMRERLLEMKAKYPLIGDV-RGIGL  383 (459)
T ss_pred             HHHhhcc----C-CCCC-CCCCc-CHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHhhCCCeeee-eeccc
Confidence            5432221    1 0111 23333 44455555578887765  3567788888888888887621212222111 11245


Q ss_pred             eEEEEecCCC---------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHH
Q psy8850         293 NLNISFNFIE---------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDF  361 (397)
Q Consensus       293 ~~~~~~~~~~---------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~  361 (397)
                      ++.+.|....         ...+...+.  |+.+.+.                       .++.+|++++..+++++||+
T Consensus       384 ~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-----------------------~~~~i~~~Ppl~it~~eid~  440 (459)
T PRK06082        384 LWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS-----------------------QGNVIQLSPPLIITREELTQ  440 (459)
T ss_pred             eeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec-----------------------CCCEEEEeCCCccCHHHHHH
Confidence            5566664211         112332222  5555421                       13789999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC
Q psy8850         362 TIKLLKMKVKKLRELS  377 (397)
Q Consensus       362 ~~~~l~~~~~~~~~~~  377 (397)
                      +++++.+++.++.+++
T Consensus       441 ~~~~l~~~l~~~~~~~  456 (459)
T PRK06082        441 ALAILEEAIAKICQDF  456 (459)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999998875543

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.84  E-value=4.8e-18  Score=161.54  Aligned_cols=326  Identities=15%  Similarity=0.084  Sum_probs=196.3

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCc-EEEeCChhHHHHHHHHHhHhhh
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PRE-IIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~-i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      .+..+|.|.+++.+++.... .    .+. .+...+...++.+.|++++...  ... +++++||++|++.+++... .+
T Consensus        53 lGh~~p~i~~ai~~q~~~~~-~----~~~-~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr-~~  125 (442)
T TIGR00709        53 LGHNHPNMKQKILDYLQSGL-P----LHT-LDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAK-TY  125 (442)
T ss_pred             CCCCCHHHHHHHHHHHHhcc-C----ccc-cccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHH-Hh
Confidence            35678999999999987621 0    111 1122345667788888887532  124 4556999999999999544 44


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhh-----CC-----cEEEEeccCCCCCC--------C----HHHHHHHhc------
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLEN-----DG-----FRVTYLKPKNNGLI--------T----LSQLEEKIC------  134 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~-----~g-----~~v~~v~~~~~~~~--------d----~~~l~~~i~------  134 (397)
                      ++ +.+|+....+|++.......+..     .+     ..+..+|.......        +    .+.+++.+.      
T Consensus       126 tg-r~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (442)
T TIGR00709       126 TG-RTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGV  204 (442)
T ss_pred             cC-CCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCC
Confidence            44 45677666666666544443311     01     12333443321111        1    122344442      


Q ss_pred             CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCC
Q psy8850         135 SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKG  204 (397)
Q Consensus       135 ~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g  204 (397)
                      +++.+|+++.+++..|.+.+    ++++.++|++||+++|.|+++. +|..    ..+.....+|++++|  | +.++..
T Consensus       205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~~G~P  282 (442)
T TIGR00709       205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMS--KAVGGGLP  282 (442)
T ss_pred             CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEc--ccccCCcc
Confidence            46789999999988887754    7899999999999999999987 3321    111223468999976  9 655455


Q ss_pred             ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850         205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  284 (397)
                      +|+++++++ ...+....      ...+.+ .|...+++..++++.+.+  ..+.++.+++.++|++.|++......++.
T Consensus       283 igav~~~~~-~~~~~~~~------~~~T~~-gnpla~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~v~  352 (442)
T TIGR00709       283 LAVLLIAPE-FDAWQPAG------HTGTFR-GNQLAMVTGTEALNYWKD--DNLAQNAQERGERITSFLDDMIKEHPCIG  352 (442)
T ss_pred             cEEEEEchH-HhccCCCc------CCCCCC-cCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            899998876 33332211      112233 344455555578887655  35667788888888888876111222222


Q ss_pred             CCCCCCCceEEEEecCCC---------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         285 DMNNRIPHNLNISFNFIE---------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      + -...+.++.+.|....               ...+...+.  |+.+.+..                     ..++.||
T Consensus       353 ~-vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~---------------------~~~~~l~  410 (442)
T TIGR00709       353 N-VRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGG---------------------REGEVFR  410 (442)
T ss_pred             e-eeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecC---------------------CCCCEEE
Confidence            1 1122455556663210               122333332  66654321                     0137899


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.++..+|++|+|++++++.+++.++
T Consensus       411 ~~Ppl~it~~ei~~~~~~l~~~l~~~  436 (442)
T TIGR00709       411 LLCPITIDQEECEEGISRFKQAVEEA  436 (442)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999776

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.84  E-value=2.7e-18  Score=163.92  Aligned_cols=326  Identities=14%  Similarity=0.149  Sum_probs=193.2

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .+..+|.|.+++++++..... ..     ......+...++.+.|+++++... +.++|++||++|++.+++.. +.+++
T Consensus        68 lGh~~p~v~~ai~~q~~~~~~-~~-----~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tg  140 (451)
T PRK06918         68 VGHSHPKVKEALHKQVDQYIH-TG-----FNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIA-RKYTK  140 (451)
T ss_pred             CCCCCHHHHHHHHHHHHhccC-cc-----ccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHH-HHHhC
Confidence            346789999999999876321 00     001113456778888888876432 47999999999999999964 44444


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhh-C-------C---cEEEEeccCC-----CCCCC-------HHHHHHHh-----cCC
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLEN-D-------G---FRVTYLKPKN-----NGLIT-------LSQLEEKI-----CSD  136 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~-~-------g---~~v~~v~~~~-----~~~~d-------~~~l~~~i-----~~~  136 (397)
                      + .+|+....+|++.......+.. .       +   ..+..+|...     .+...       ++.+++.+     .++
T Consensus       141 r-~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (451)
T PRK06918        141 R-QGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPET  219 (451)
T ss_pred             C-CcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCc
Confidence            4 5566666555555433322211 0       0   1123333321     11000       22344433     146


Q ss_pred             ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc--ccccCcc--cccEEEecccc-ccCCCCce
Q psy8850         137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI--DINIQNY--KVDLMSFSAHK-IYGPKGIG  206 (397)
Q Consensus       137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~--~~~~~~~--~~d~~~~s~~K-~~g~~g~g  206 (397)
                      +.+|+++.++...|.+.|    +++|.++|++||+++|+|+++. ++..  .+.+..+  .+|+++  ++| +.++..+|
T Consensus       220 iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t--~sK~l~~G~pig  297 (451)
T PRK06918        220 IAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLIT--VSKSLGAGVPIS  297 (451)
T ss_pred             eEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEe--eehhhcCCCccE
Confidence            789999988877787666    6889999999999999999987 2221  1222222  378665  559 55444589


Q ss_pred             EEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEe
Q psy8850         207 ALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYIN  283 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~  283 (397)
                      +++++++..+.+.+...+      ...+ .+.....+..++++.+.+  ..+.++.+++.+++.+.|++.   .+.+..+
T Consensus       298 ~v~~~~~i~~~~~~~~~~------~T~~-g~~l~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~v  368 (451)
T PRK06918        298 GVIGRKEIMDESAPGELG------GTYA-GSPLGCAAALAVLDIIEK--ENLNDRAIELGKVVMNRFEEMKNKYNCIGDV  368 (451)
T ss_pred             EEEEcHHHHhccCCCCcC------cCCC-cCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHhhCCCceee
Confidence            999987765555432211      2222 334445554577777754  234555666666666666551   2221112


Q ss_pred             CCCCCCCCceEEEEec-C----CC----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC
Q psy8850         284 GDMNNRIPHNLNISFN-F----IE----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR  352 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~~-~----~~----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~  352 (397)
                      ...    +.++.+.+. +    .+    ...+...+.  |+.+.++..+                     ++.+||+++.
T Consensus       369 rg~----G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~---------------------~~~lrl~p~l  423 (451)
T PRK06918        369 RGL----GAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTY---------------------GNVIRVLMPL  423 (451)
T ss_pred             ccc----eeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCC---------------------CCEEEEECCC
Confidence            111    333344342 1    11    123333333  7877765211                     2789999988


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         353 FTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       353 ~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      .+++++|++++++|.+++.++.+
T Consensus       424 ~~t~~~id~~l~~l~~~l~~~~~  446 (451)
T PRK06918        424 VITDEQLEEGLTIIEESLQACYE  446 (451)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999987743

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.84  E-value=1.2e-18  Score=164.09  Aligned_cols=330  Identities=13%  Similarity=0.084  Sum_probs=201.1

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|++.+++.+++.... ....     .....+...++.+.|+++.+...+.++|++||++|++.+++....+..  
T Consensus        54 lGh~~p~i~~ai~~q~~~~~-~~~~-----~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~  127 (422)
T PRK05630         54 HGHGHPRLKAAAHKQIDTMS-HVMF-----GGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQ  127 (422)
T ss_pred             CCCCCHHHHHHHHHHHHhCC-Cccc-----CCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence            35678999999999998632 1110     001123456778888888754445899999999999999996543321  


Q ss_pred             --cCCCEEEEcCCCChhhH-HHHHHHhhC-------C---cEEEEeccCCCCCCC-------HHHHHHHhcCCceEEEEe
Q psy8850          84 --KRGKHIITVQTEHKSVL-DSIRKLEND-------G---FRVTYLKPKNNGLIT-------LSQLEEKICSDTILVSVM  143 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~-~~~~~~~~~-------g---~~v~~v~~~~~~~~d-------~~~l~~~i~~~~~~v~~~  143 (397)
                        ..+.+|+....+|++.. .+.......       +   ..+..+|.......+       .+.+++.+.+++.+|+++
T Consensus       128 g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvi~E  207 (422)
T PRK05630        128 GHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDETVAAIIIE  207 (422)
T ss_pred             CCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhhceEEEEEe
Confidence              12356777666666544 332221100       0   112333332111111       245566666789999999


Q ss_pred             cc-cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEe
Q psy8850         144 LV-NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIR  211 (397)
Q Consensus       144 ~~-~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~  211 (397)
                      .. +...|.+.|    ++++.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+ ..+|+++++
T Consensus       208 Pi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~g--K~l~gG~~p~~av~~~  285 (422)
T PRK05630        208 PIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVG--KALTGGFMSFAATLCT  285 (422)
T ss_pred             chhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeeee--chhhcCccccceeecc
Confidence            85 888887665    6899999999999999999985 2221    112233468999776  9 6443 347888888


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCC
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP  291 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  291 (397)
                      ++..+.+......+......+. ..+...+++..++++.+.+.  ...+++.++.++|++.|++ +.....+.+ -...+
T Consensus       286 ~~i~~~~~~~~~~~~~~h~~T~-~g~Pla~aaa~aaL~~l~~~--~~~~~~~~~g~~l~~~L~~-l~~~~~v~~-vRg~G  360 (422)
T PRK05630        286 DKVAQLISTPNGGGALMHGPTF-MANPLACAVAHASLEIIETG--MWRKQVKRIEAELIAGLSP-LAHLPGVAD-VRVLG  360 (422)
T ss_pred             HHHHHHHhccCCCCccccCCCC-cCCHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHH-hhcCCCeee-eeccc
Confidence            7655443211000000011122 24555666666888888653  4556777777888877765 322111111 11124


Q ss_pred             ceEEEEecCC-ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         292 HNLNISFNFI-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       292 ~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      .++.+.+... +...+...+.  |+.+.+.                        ++.+||.++..+|++|||+++++|.+
T Consensus       361 l~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~------------------------g~~l~~~PpL~it~~~i~~~~~~l~~  416 (422)
T PRK05630        361 AIGVVEMEQPVDMEEATQAAVDHGVWLRPF------------------------GRLVYVMPPYITTSEQIAQICAALAA  416 (422)
T ss_pred             cEEEEEECCcccHHHHHHHHHHCCeEEEec------------------------CCEEEEECCccCCHHHHHHHHHHHHH
Confidence            5666666532 2345555554  6666431                        27899999999999999999999999


Q ss_pred             HHHH
Q psy8850         369 KVKK  372 (397)
Q Consensus       369 ~~~~  372 (397)
                      +++.
T Consensus       417 al~~  420 (422)
T PRK05630        417 AVKA  420 (422)
T ss_pred             HHhc
Confidence            8854

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.84  E-value=2e-18  Score=164.48  Aligned_cols=332  Identities=14%  Similarity=0.129  Sum_probs=205.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh----
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY----   82 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~----   82 (397)
                      +..+|.|.+++.+++..... ..  ..  + ...+...++.+.|++++....+.++|++||++|++.+++.....+    
T Consensus        71 Gh~~p~v~~Ai~~ql~~l~~-~~--~~--~-~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g  144 (460)
T PRK06916         71 GHQVPELDEAIREQLNKIAH-ST--LL--G-LANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKG  144 (460)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-cc--cc--c-cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence            56789999999999986321 11  00  1 112345678888888876444579999999999999999655322    


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhC-C---------cEEEEeccCCC-----C-C------CCHHHHHHHhc---CCc
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLEND-G---------FRVTYLKPKNN-----G-L------ITLSQLEEKIC---SDT  137 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~-g---------~~v~~v~~~~~-----~-~------~d~~~l~~~i~---~~~  137 (397)
                      ...+.+|+....+|++.......+... .         ..+..+|....     + .      -+++++++.+.   +++
T Consensus       145 ~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~i  224 (460)
T PRK06916        145 KPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEI  224 (460)
T ss_pred             CCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcE
Confidence            122467777777666654333322110 0         11233433210     0 0      13566777775   468


Q ss_pred             eEEEEec-ccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCc
Q psy8850         138 ILVSVML-VNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGI  205 (397)
Q Consensus       138 ~~v~~~~-~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~  205 (397)
                      .+|+++. ++...|.+.|    ++.+.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+ ..+
T Consensus       225 AAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~g--K~l~gG~~Pi  302 (460)
T PRK06916        225 AAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAG--KGLTGGYLPI  302 (460)
T ss_pred             EEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeee--hhhhcCcccc
Confidence            8999998 5888888765    7899999999999999999976 3222    112223468999877  9 6554 358


Q ss_pred             eEEEEecCCCCccccccc-cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850         206 GALYIRRNPRTRIEAQIH-GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       206 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  284 (397)
                      |+++++++..+.+..... ........+.+. |...+++..++++.+.+  ..+.++++++.+++++.|++ +.....+.
T Consensus       303 ~av~~~~ei~~~~~~~~~~~~~~~~~~T~~g-npl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~l~~-l~~~~~v~  378 (460)
T PRK06916        303 AITVTTDEIYNAFYGDYEEQKTFFHGHSYTG-NPLGCAVALANLELYEK--TNLIEQVARKTEYVATQLED-LFALKHVG  378 (460)
T ss_pred             ceeeecHHHHHHhhccccccCccccCCCCCC-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-hhcCCCeE
Confidence            999998765544321100 000011122333 44555555678887765  45678888888888888877 43222121


Q ss_pred             CCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850         285 DMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI  350 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  350 (397)
                      + -...+.++-+.+....            ...+...+.  |+.+.+.                        ++.+|+.+
T Consensus       379 ~-vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~------------------------g~~l~~~P  433 (460)
T PRK06916        379 D-IRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL------------------------GNTIVFMP  433 (460)
T ss_pred             E-eecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec------------------------CCEEEEeC
Confidence            1 1112344455553210            123433333  6666432                        26899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         351 GRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       351 ~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +..++++|||+++++|.++++++.+
T Consensus       434 pl~it~~~id~~~~~l~~~l~~~~~  458 (460)
T PRK06916        434 PLASTIDELDEMLRILYKAISDVTE  458 (460)
T ss_pred             CcccCHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999987654

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.84  E-value=7.1e-18  Score=160.03  Aligned_cols=323  Identities=18%  Similarity=0.153  Sum_probs=199.0

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .+..+|.+.+++.+++.... ....     .....+...++.+.|++++..+ .+.++|++||++|++.+++... .+++
T Consensus        68 lGh~~p~v~~Ai~~ql~~~~-~~~~-----~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr-~~tg  140 (441)
T PRK05769         68 VGHAHPKVVKAVKEQAEKFL-HYSL-----TDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIAR-YHTG  140 (441)
T ss_pred             cCCCCHHHHHHHHHHHHhcc-CccC-----cccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHH-HHhC
Confidence            34568999999999997622 1110     0011234567888888887532 3579999999999999999544 4444


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhh--C---------CcEEEEeccCCCCC-------------CCHHHHHH-Hh-----c
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLEN--D---------GFRVTYLKPKNNGL-------------ITLSQLEE-KI-----C  134 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~--~---------g~~v~~v~~~~~~~-------------~d~~~l~~-~i-----~  134 (397)
                       +++|+....+|++.......+..  .         ...+..+|.+....             -+++.+++ .+     .
T Consensus       141 -r~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~  219 (441)
T PRK05769        141 -RKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPP  219 (441)
T ss_pred             -CCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCC
Confidence             46677766666665543332210  0         01233444422110             01344665 22     2


Q ss_pred             CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc--c--ccCcccccEEEecccc-ccCCCC
Q psy8850         135 SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID--I--NIQNYKVDLMSFSAHK-IYGPKG  204 (397)
Q Consensus       135 ~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~--~--~~~~~~~d~~~~s~~K-~~g~~g  204 (397)
                      +++.+|+++.+....|.+.|    ++++.++|++||+++|+|++++ +|...  +  ......+|++++|  | +.++.+
T Consensus       220 ~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~--K~l~~G~p  297 (441)
T PRK05769        220 EEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLA--KAIAGGLP  297 (441)
T ss_pred             CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEc--ccccCCcc
Confidence            46789999999999999888    8999999999999999999987 32211  1  1112357888765  9 554445


Q ss_pred             ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850         205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  284 (397)
                      +|+++++++..... ...+      ....+. +...+++..++++.+.+   ++.++..++.++|++.|++......+..
T Consensus       298 ~gav~~~~~i~~~~-~~~~------~~T~~g-~p~~~aaa~a~L~~l~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~  366 (441)
T PRK05769        298 LGAVIGRAELMFLP-PGSH------ANTFGG-NPVAAAAALATLEELEE---GLLENAQKLGEYLRKELKELKEKYEFIG  366 (441)
T ss_pred             cEEEEEehhhhhcC-CCCC------CCCCCc-CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            78888887654322 1111      122233 44455555578887764   6778888888888888876211122221


Q ss_pred             CCCCCCCceEEEEecCCC-------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850         285 DMNNRIPHNLNISFNFIE-------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT  355 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~-------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  355 (397)
                      . ....+.++.+.|....       ...+...+.  |+.+.+.                       +.+.+|++++..+|
T Consensus       367 ~-vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~-----------------------~~~~lr~~p~l~~t  422 (441)
T PRK05769        367 D-VRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGA-----------------------GKSAIRIIPPLIIT  422 (441)
T ss_pred             e-eecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecC-----------------------CCCEEEEeCCCCCC
Confidence            1 1112445555663221       123333332  6665431                       12679999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8850         356 EKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~~~~  373 (397)
                      ++|||+++++|.+++.++
T Consensus       423 ~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        423 EEEADIGLEILEEAIKEL  440 (441)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998653

>PRK07482 hypothetical protein; Provisional

Probab=99.84  E-value=2e-18  Score=164.59  Aligned_cols=334  Identities=12%  Similarity=0.062  Sum_probs=202.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|+|.+++++++.... ..+    .......+...++.+.|++++....+.++|++|||+|++.+++....+..   
T Consensus        65 Gh~~p~v~~Av~~q~~~~~-~~~----~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g  139 (461)
T PRK07482         65 GYGRTEVAEAIAEQAKELA-YYH----TYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLG  139 (461)
T ss_pred             CCCCHHHHHHHHHHHHhcC-ccc----cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence            4678999999999998631 101    01011234567788888888754445799999999999999996643221   


Q ss_pred             -cCCCEEEEcCCCChhhHHHHHHHhh-------CC---cEEEEeccCC--CC-----------CCCHHHHHHHhc----C
Q psy8850          84 -KRGKHIITVQTEHKSVLDSIRKLEN-------DG---FRVTYLKPKN--NG-----------LITLSQLEEKIC----S  135 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~~~~~~~~-------~g---~~v~~v~~~~--~~-----------~~d~~~l~~~i~----~  135 (397)
                       ..+.+|+....+|++.......+..       .+   ..+..++...  ..           .-+++++++.+.    +
T Consensus       140 ~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  219 (461)
T PRK07482        140 RPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPD  219 (461)
T ss_pred             CCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence             1246777776666664332221110       01   1122232221  10           013577787773    4


Q ss_pred             CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CC
Q psy8850         136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KG  204 (397)
Q Consensus       136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g  204 (397)
                      ++.+|+++.++...|.+.|    +++|.++|++||+++|+|+++. +|-.    ..+.....+|+++++  | +.|+ .+
T Consensus       220 ~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~P  297 (461)
T PRK07482        220 TIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVA--KGLTSAYAP  297 (461)
T ss_pred             cEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEc--cccccCccc
Confidence            5889999999988888765    7899999999999999999987 3322    122233468999987  9 6554 25


Q ss_pred             ceEEEEecCCCCccccccc-cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEe
Q psy8850         205 IGALYIRRNPRTRIEAQIH-GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN  283 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  283 (397)
                      +|.++++++..+.+..... .+......+.+ .|...+++..++++.+.+  +++.++.+++.++|.+.|++......++
T Consensus       298 i~av~~~~~i~~~~~~~~~~~~~~~h~~T~~-gnpl~~Aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~v  374 (461)
T PRK07482        298 LSGSIVGEKVWDVLEQGSDEHGAIGHGWTYS-GHPICAAAALANLDILER--ENLVGNAAEVGAYFRARLRAAFGDHPLV  374 (461)
T ss_pred             cceeeecHHHHHHHhcccccCCccccCCCCC-cCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence            7888888665433321100 01111122233 344555666688888765  4566777777788888776521221111


Q ss_pred             CCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850         284 GDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT  349 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (397)
                      .. -...+.++-+.+....            ...+...+.  |+.+.++.                      .++.+|+.
T Consensus       375 ~~-vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~----------------------~~~~i~~~  431 (461)
T PRK07482        375 GE-VRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP----------------------HGDILGFA  431 (461)
T ss_pred             EE-EeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC----------------------CCCEEEEe
Confidence            11 0112445556664211            123333333  65553210                      12789999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         350 IGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ++..++++||++++++|.++++++
T Consensus       432 Ppl~it~~ei~~~~~~l~~~l~~~  455 (461)
T PRK07482        432 PPLVLTRAEADEIVAIAKDAVDEV  455 (461)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999876

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.84  E-value=2.1e-18  Score=164.10  Aligned_cols=312  Identities=17%  Similarity=0.109  Sum_probs=193.3

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +..+|.|.+++++++....      .+.   ...+...+++++|++++... +.+++++||++|++.+++.... ++ ++
T Consensus        63 Gh~~p~v~~ai~~q~~~~~------~~~---~~~~~~~~lae~l~~~~~~~-~~v~~~~sGseA~e~Alk~ar~-~~-gr  130 (423)
T TIGR00713        63 GHAHPRVVEAVKEALERGT------SYG---APTEAEILLAKEIISRVPSV-EMVRFVNSGTEATMSAVRLARG-YT-GR  130 (423)
T ss_pred             CCCCHHHHHHHHHHHHhCC------cCC---CCCHHHHHHHHHHHHhCCcc-cEEEEeCCHHHHHHHHHHHHHH-hh-CC
Confidence            4678999999999997621      111   12345688999999988653 5899999999999999996443 33 45


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCc-----------------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEeccc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGF-----------------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVN  146 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~-----------------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~  146 (397)
                      ++|+...++|++...........+.                 .+..+|.     .|++++++++.   +++++|+++...
T Consensus       131 ~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~aavi~ep~~  205 (423)
T TIGR00713       131 DKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEEVFEEYGEEIAGVIVEPVA  205 (423)
T ss_pred             CEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCC-----CCHHHHHHHHHHcCCcEEEEEEeCCC
Confidence            8899999988887544332110010                 1111221     27899999887   568899887666


Q ss_pred             Cccccccc----HHHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCc
Q psy8850         147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR  217 (397)
Q Consensus       147 ~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~  217 (397)
                      +.+|.+.|    +++|.++|++||+++|+|++|.....    ........+|++  +++| +.++..+|+++++++..+.
T Consensus       206 ~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~~G~pig~v~~~~~i~~~  283 (423)
T TIGR00713       206 GNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIGGGLPVGAFGGRREIMER  283 (423)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhcCCCceeeeeEHHHHHHh
Confidence            66898877    68999999999999999999963221    111122346765  4669 4433347999998766555


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEE-eCCCCCCCCceE
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYI-NGDMNNRIPHNL  294 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~  294 (397)
                      +....   ........ ..+...+++..++++.+.+  .+++..+....+++.|.+.+++ . ++.. ....    +.++
T Consensus       284 ~~~~~---~~~~~~T~-~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~v~~~----g~~~  353 (423)
T TIGR00713       284 LAPEG---PVYQAGTL-SGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLED-T-GIPHTVNRV----GSMF  353 (423)
T ss_pred             hCcCC---CeeeccCC-CCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh-c-CCCeEEEee----ccEE
Confidence            54210   00011122 2344555555578887764  2444555555555666665655 3 2222 1111    3444


Q ss_pred             EEEecCC-----------Ch---HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         295 NISFNFI-----------EG---ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       295 ~~~~~~~-----------~~---~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      .+.+...           +.   ..+...+.  |+.+.++.                       .+.+|+++.  +++++
T Consensus       354 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~l~~~--~t~~~  408 (423)
T TIGR00713       354 SLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQ-----------------------FEACFLSAA--HTEED  408 (423)
T ss_pred             EEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCC-----------------------ccceeeECC--CCHHH
Confidence            4444311           11   13444443  66664321                       145788876  68999


Q ss_pred             HHHHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKVKK  372 (397)
Q Consensus       359 i~~~~~~l~~~~~~  372 (397)
                      +++++++|.+++++
T Consensus       409 i~~~~~~l~~~l~~  422 (423)
T TIGR00713       409 IENTIEAAEEVFAE  422 (423)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998865

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.84  E-value=2.2e-18  Score=162.56  Aligned_cols=329  Identities=12%  Similarity=0.058  Sum_probs=203.8

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|+|.+++++++.+.. ....     .....+...++.+.|++.+....+.++|++||++|++.+++.....+.   
T Consensus        59 Gh~~p~v~~ai~~q~~~~~-~~~~-----~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g  132 (429)
T PRK06173         59 GYNHPRLNAAATNQLAKMS-HIMF-----GGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKG  132 (429)
T ss_pred             CCCCHHHHHHHHHHHHhcC-Cccc-----cccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhC
Confidence            4668999999999987632 1111     011124456788888888754445799999999999999996553321   


Q ss_pred             -cCCCEEEEcCCCChhhH-HHHHHHh-----hCC-----cEEEEeccCCCC------CCCHHHHHHHhc---CCceEEEE
Q psy8850          84 -KRGKHIITVQTEHKSVL-DSIRKLE-----NDG-----FRVTYLKPKNNG------LITLSQLEEKIC---SDTILVSV  142 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~-~~~~~~~-----~~g-----~~v~~v~~~~~~------~~d~~~l~~~i~---~~~~~v~~  142 (397)
                       ..+.+|+....+|++.. .++....     +.+     ..+..+|.....      .-+++.+++.+.   +++.+|++
T Consensus       133 ~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~  212 (429)
T PRK06173        133 EVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALIL  212 (429)
T ss_pred             CCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence             12356777777666643 3322111     000     012333332110      114666777774   46889999


Q ss_pred             ecc-cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEE
Q psy8850         143 MLV-NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYI  210 (397)
Q Consensus       143 ~~~-~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~  210 (397)
                      +.+ +...|.+.|    ++++.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+ ..++.+++
T Consensus       213 EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~g--K~l~gG~~p~~a~~~  290 (429)
T PRK06173        213 EPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIG--KALTGGYLTLSATIT  290 (429)
T ss_pred             cchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEEee--hhhhCCccccceEEe
Confidence            986 888888755    7899999999999999999985 2221    122223468988865  9 6443 34688888


Q ss_pred             ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q psy8850         211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI  290 (397)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  290 (397)
                      +++..+.+.+.. ........+.+ .+...+++..++++.+.+.  ...+++.++.++|++.|++ +.+...+.. ....
T Consensus       291 ~~~i~~~~~~~~-~~~~~~~~T~~-g~p~~~aaa~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~-~~~~~~v~~-vRg~  364 (429)
T PRK06173        291 TEAIAQTICSGE-AKCFMHGPTFM-ANPLACAIAAESIRLLLES--PWQQNIQRIEAQLKQELAP-AAEFDSVAE-VRVL  364 (429)
T ss_pred             cHHHHHHHhcCC-CCccccCCCCC-cCHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHH-hhcCCCeee-eecc
Confidence            765544332100 00000111122 3456666666888887653  4577888888888888876 322222211 0112


Q ss_pred             CceEEEEecCC-ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         291 PHNLNISFNFI-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       291 ~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                      +.++.+.+... ....+...+.  |+.+.+.                        ++.|||.++..++++|+|+++++|.
T Consensus       365 Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~------------------------g~~l~~~Ppl~it~~ei~~~~~~l~  420 (429)
T PRK06173        365 GAIGVVEMKEPVNMATLQPRFVEHGIWVRPF------------------------GKLVYIMPPFIISPDELSQLTSGLL  420 (429)
T ss_pred             ceEEEEEeCCcccHHHHHHHHHHCCeEEEec------------------------CCEEEEeCCccCCHHHHHHHHHHHH
Confidence            44556666532 2345666664  7766532                        2689999999999999999999999


Q ss_pred             HHHHHH
Q psy8850         368 MKVKKL  373 (397)
Q Consensus       368 ~~~~~~  373 (397)
                      +++.++
T Consensus       421 ~~l~~~  426 (429)
T PRK06173        421 RVLKQE  426 (429)
T ss_pred             HHHHHH
Confidence            998653

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.84  E-value=1.3e-18  Score=163.91  Aligned_cols=328  Identities=9%  Similarity=0.066  Sum_probs=201.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|.+.+++++++.+..... .     .....+...++.+.|+++.+...+.++|++||++|++.+++.....+.   
T Consensus        58 Gh~~p~i~~Ai~~q~~~~~~~~-~-----~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g  131 (428)
T PRK07986         58 GYNHPQLNAAMKSQIDAMSHVM-F-----GGITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG  131 (428)
T ss_pred             CCCCHHHHHHHHHHHhhcCCcc-c-----cccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence            4668999999999987632110 0     011123456677888887754445799999999999999996543221   


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhC---------C--cEEEEeccCCCC------CCCHHHHHHHhc---CCceEEEEe
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLEND---------G--FRVTYLKPKNNG------LITLSQLEEKIC---SDTILVSVM  143 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~---------g--~~v~~v~~~~~~------~~d~~~l~~~i~---~~~~~v~~~  143 (397)
                      .++.+|+....+|++.......+...         +  ..+..+|.....      .-|++++++.+.   +++.+|+++
T Consensus       132 ~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~E  211 (428)
T PRK07986        132 EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILE  211 (428)
T ss_pred             CCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence            12467777777666644322221100         0  112233322110      125677888775   357788898


Q ss_pred             cc-cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEe
Q psy8850         144 LV-NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIR  211 (397)
Q Consensus       144 ~~-~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~  211 (397)
                      .+ +...|.+.+    +++|.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+ ..+|.++++
T Consensus       212 pi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~g--K~l~gG~~p~~av~~~  289 (428)
T PRK07986        212 PIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILCLG--KALTGGTMTLSATLTT  289 (428)
T ss_pred             chhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCEEEec--hhhhCCcccCcchhch
Confidence            85 677776543    7899999999999999999985 2221    112233468998765  9 6544 357888888


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCC
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP  291 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  291 (397)
                      ++..+.+..... +........+ .+...+++..++++.+.+  .++.++..++.++|++.|++ +.....+.+ -...+
T Consensus       290 ~~i~~~~~~~~~-~~~~~~~T~~-g~p~~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~l~~-l~~~~~i~~-vRg~G  363 (428)
T PRK07986        290 REVAETISNGEA-GCFMHGPTFM-GNPLACAVANASLSLLES--GDWQQQVAAIEAQLREELAP-LRDAPMVAD-VRVLG  363 (428)
T ss_pred             HHHHHHhhcCCC-CccccCCCCC-cCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-HhcCCCEEe-Eeccc
Confidence            765554432110 0000112222 345666666688888765  35678888888888888877 422221211 11113


Q ss_pred             ceEEEEecCC-ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         292 HNLNISFNFI-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       292 ~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      .++.+.+... ....+...+.  |+.+.+.                        ++.||+.++..+|++||++++++|.+
T Consensus       364 l~~~ve~~~~~~~~~~~~~l~~~Gl~~~~~------------------------g~~i~~~Ppl~it~~ei~~~~~~l~~  419 (428)
T PRK07986        364 AIGVVETTRPVNMAALQRFFVEQGVWIRPF------------------------GKLIYLMPPYIILPEQLQRLTAAVNR  419 (428)
T ss_pred             eEEEEEeCCcccHHHHHHHHHHCCcEEEec------------------------CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4555555432 2345555554  6666432                        26899999999999999999999999


Q ss_pred             HHHH
Q psy8850         369 KVKK  372 (397)
Q Consensus       369 ~~~~  372 (397)
                      ++++
T Consensus       420 ~l~~  423 (428)
T PRK07986        420 AVQD  423 (428)
T ss_pred             HHhh
Confidence            9853

>PRK12403 putative aminotransferase; Provisional

Probab=99.84  E-value=3.4e-18  Score=162.91  Aligned_cols=332  Identities=17%  Similarity=0.143  Sum_probs=196.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh---
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY---   82 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~---   82 (397)
                      .+..+|.|.+++.+++......  + .. .+ ...+...++.+.|+++++...+.++|++||++|++.+++.....+   
T Consensus        68 lGh~hp~v~~A~~~q~~~~~~~--~-~~-~~-~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~  142 (460)
T PRK12403         68 LGYGRKDLAAAAARQMEQLPYY--N-MF-FH-TTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVL  142 (460)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCe--e-cc-cc-cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhh
Confidence            3456899999999999873210  0 00 00 123456778888988887444579999999999999999765432   


Q ss_pred             ccCC-CEEEEc-CCCChhhHHHHHHHhhCC--------cEEEEeccCCC----CCC--------CHHHHHHHhc----CC
Q psy8850          83 KKRG-KHIITV-QTEHKSVLDSIRKLENDG--------FRVTYLKPKNN----GLI--------TLSQLEEKIC----SD  136 (397)
Q Consensus        83 ~~~g-~~vl~~-~~~~~s~~~~~~~~~~~g--------~~v~~v~~~~~----~~~--------d~~~l~~~i~----~~  136 (397)
                      .+++ .+|+.. ...|.++..++.......        ..+..+|....    +.+        +.+++++.+.    ++
T Consensus       143 g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~  222 (460)
T PRK12403        143 GKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAEN  222 (460)
T ss_pred             CCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCc
Confidence            1222 334433 334555555544321100        01233332210    001        1355666552    45


Q ss_pred             ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCC-Cc
Q psy8850         137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPK-GI  205 (397)
Q Consensus       137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~-g~  205 (397)
                      +.+|+++.++...|.+.|    ++++.++|++||+++|+|++++ +|..    ..+.....+|+++++  | +.|+. .+
T Consensus       223 iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~g--K~lggG~~Pi  300 (460)
T PRK12403        223 VAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIA--KGLTSGYVPM  300 (460)
T ss_pred             eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEc--ccccccccce
Confidence            789999999998998887    8999999999999999999986 3222    112223468999866  9 65542 57


Q ss_pred             eEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCcEEEeC
Q psy8850         206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL-FLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       206 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~  284 (397)
                      |.++++++..+.+...  +.......+.+ .+...+++..++|+.+.+  +.+.++.. ++.++|++.|++......++.
T Consensus       301 ga~v~~~~i~~~~~~~--~~~~~~~~T~~-gnPl~~Aaala~L~~i~~--~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~  375 (460)
T PRK12403        301 GGLVLSKRIAEALVEQ--GGVFAHGLTYS-GHPVAAAVAIANLKALRD--EGVVTRVKDDTGPYLQRCLREVFGDHPLVG  375 (460)
T ss_pred             EEEEECHHHHHHHhcC--CCccccCCCCC-CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            8888886554433211  11011112222 345566666688888765  23566664 667777776654111221221


Q ss_pred             CCCCCCCceEEEEecCCC--------hHHHHHHh------CCcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850         285 DMNNRIPHNLNISFNFIE--------GESLLMAI------KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI  350 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l------~~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  350 (397)
                      .- ...+.++.+.|....        ...+...+      +|+.+.+.                        ++.+|+++
T Consensus       376 ~v-rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~------------------------~~~~~l~P  430 (460)
T PRK12403        376 EV-QGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST------------------------LGRMIMAP  430 (460)
T ss_pred             eE-eecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec------------------------CCEEEEEC
Confidence            11 111445555553210        01121111      16555421                        15689999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         351 GRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       351 ~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +..+|++|+|+++++|.+++.++.
T Consensus       431 pl~it~~eid~~~~~l~~al~~~~  454 (460)
T PRK12403        431 ALVAGRAEIDELVDKTRIAVDRTA  454 (460)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998884

>PRK05965 hypothetical protein; Provisional

Probab=99.84  E-value=4e-18  Score=162.42  Aligned_cols=332  Identities=13%  Similarity=0.116  Sum_probs=204.7

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|+|.+++.+++..... ... .+  + ...+...++.+.|++++..+.+.++|++||++|++.+++.....+.   
T Consensus        61 Gh~~p~i~~Ai~~q~~~~~~-~~~-~~--~-~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g  135 (459)
T PRK05965         61 GYGQESIVEAAAEQMRELPY-ATG-YF--H-FGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATG  135 (459)
T ss_pred             CCCCHHHHHHHHHHHHhcCC-ccc-cc--c-cCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcC
Confidence            45689999999999976221 000 00  1 1123456788888888754445799999999999999996543321   


Q ss_pred             -cCCCEEEEcCCCChhhHH-HHHHHhh------CC---cEEEEeccCC--CC--CCC--------HHHHHHHhc----CC
Q psy8850          84 -KRGKHIITVQTEHKSVLD-SIRKLEN------DG---FRVTYLKPKN--NG--LIT--------LSQLEEKIC----SD  136 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~-~~~~~~~------~g---~~v~~v~~~~--~~--~~d--------~~~l~~~i~----~~  136 (397)
                       ..+.+|+....+|++... +......      .+   ..+..++...  ..  .-|        ++++++.+.    ++
T Consensus       136 ~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  215 (459)
T PRK05965        136 RPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADN  215 (459)
T ss_pred             CCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCc
Confidence             124567777766666543 2222110      01   1122333221  00  012        256777774    46


Q ss_pred             ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCc
Q psy8850         137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGI  205 (397)
Q Consensus       137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~  205 (397)
                      +.+|+++.++...|.+.|    ++++.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+ ..+
T Consensus       216 iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi  293 (459)
T PRK05965        216 VAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVA--KGLTSGYVPM  293 (459)
T ss_pred             eEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEec--hhhccCCcce
Confidence            789999999988898766    7899999999999999999987 3322    112223468999998  9 6655 368


Q ss_pred             eEEEEecCCCCccccccc-cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850         206 GALYIRRNPRTRIEAQIH-GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       206 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  284 (397)
                      |.++++++....+..... .+......+.+. +...+++..++|+.+.+  +++.++..++.++|.+.|++ +....++.
T Consensus       294 ~av~~~~~i~~~~~~~~~~~~~~~h~~T~~g-npl~~Aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~l~~-l~~~~~v~  369 (459)
T PRK05965        294 GAVLMSDHVYQGIADGAGAAAPVGHGYTYSA-HPVSAAVGLEVLRLYHE--GGLLANGQKAGPRFAAGLDA-LRAHPLVG  369 (459)
T ss_pred             eEEEEcHHHHHHHhccccccccccccCCCCC-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHh-hccCCCEE
Confidence            999998776544432100 000111223333 34455555578888765  45777888888888888877 43222222


Q ss_pred             CCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850         285 DMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI  350 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  350 (397)
                      + -...+.++-+.+....            ...+...+.  |+.+.+.                       +.+.||+.+
T Consensus       370 ~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~-----------------------g~~~i~~~P  425 (459)
T PRK05965        370 D-VRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAF-----------------------GDGVLGFAP  425 (459)
T ss_pred             E-EeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEec-----------------------CCcEEEEEC
Confidence            1 1122444555553210            122333333  6666421                       126799999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         351 GRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       351 ~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +..++++||++++++|.+++.++
T Consensus       426 pL~it~~ei~~~~~~l~~~l~~~  448 (459)
T PRK05965        426 ALCCTEGEFDLIFERTRKTLDDV  448 (459)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.84  E-value=5.6e-18  Score=159.08  Aligned_cols=321  Identities=15%  Similarity=0.167  Sum_probs=195.0

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh--c
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY--K   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~--~   83 (397)
                      .+..+|.+.+++.+++..... ... .     ...+...++.+.|+++.+.. +.++|++||++|++.+++....++  +
T Consensus        54 lGh~~p~v~~ai~~q~~~~~~-~~~-~-----~~~~~~~~la~~L~~~~~~~-~~v~f~~sGseA~e~AlklAr~~~~~~  125 (408)
T PRK04612         54 LGHNDPDLVAALTEQAGKLWH-TSN-V-----FYSAPPLKLAEELVTASRFA-EKVFLCNSGTEANEAAIKLVRKWASSQ  125 (408)
T ss_pred             CCCCCHHHHHHHHHHHHhccc-ccc-c-----cCCHHHHHHHHHHHhhCCCC-CEEEEcCchHHHHHHHHHHHHHHHHhh
Confidence            346789999999999876321 110 0     11233456777777776432 579999999999999999655432  1


Q ss_pred             c---CCCEEEEcCCCChhhHHHHHHHhh-C----Cc-----EEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcc
Q psy8850          84 K---RGKHIITVQTEHKSVLDSIRKLEN-D----GF-----RVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEI  149 (397)
Q Consensus        84 ~---~g~~vl~~~~~~~s~~~~~~~~~~-~----g~-----~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t  149 (397)
                      +   .+.+|+....+|++.......... .    +.     .+..+|.     .|++.+++.+.+ ++.+|+++..+...
T Consensus       126 g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aavi~eP~~~~g  200 (408)
T PRK04612        126 GRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-----NDVEALEAAMAGGDVAAVMLEPIQGEG  200 (408)
T ss_pred             CCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-----CCHHHHHHhhCCCCEEEEEECCccCCC
Confidence            1   134677777766665443322211 0    11     1122222     278899988864 56666776555444


Q ss_pred             ccccc----HHHHHHHHHhcCcEEEEecccc-cCccc--ccc--CcccccEEEecccc-ccCCCCceEEEEecCCCCccc
Q psy8850         150 GVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID--INI--QNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIE  219 (397)
Q Consensus       150 G~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~--~~~--~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~  219 (397)
                      |.+.+    +++|.++|++||+++|+|++++ +|...  +..  ....+|++++  +| +.++..+|+++++++..+.+.
T Consensus       201 g~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~--~K~l~~G~piga~~~~~~~~~~~~  278 (408)
T PRK04612        201 GVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTL--AKALGGGFPIGAMLAGPKVAETMQ  278 (408)
T ss_pred             CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEE--cchhcCCCceEEEEECHHHHhhhc
Confidence            44443    7899999999999999999987 22211  111  1123555555  59 544334788888765444433


Q ss_pred             cccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cEEEeCCCCCCCCceEEEEe
Q psy8850         220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISF  298 (397)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~  298 (397)
                      ....      ....+ .+.....+..++++.+.+  +++.+++.++.+++.+.|++ +. .+.+..... ..+.++-+.+
T Consensus       279 ~~~~------~~t~~-~~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~l~~-l~~~~~~i~~vr-g~Gl~~~i~~  347 (408)
T PRK04612        279 FGAH------GTTFG-GNPLAAAVARVALRKLAS--PQIAANVARQSAALRAGLEA-LNAEFGVFAQVR-GRGLMLGAVL  347 (408)
T ss_pred             CCCc------CCCCC-CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-HHhhCCCeeeee-ccceEEEEEe
Confidence            2211      12223 345555666678887765  46778888888888888876 32 122221111 1144555565


Q ss_pred             cCC---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         299 NFI---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       299 ~~~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ...   ....+...+.  |+.+.+.                       +.+.||+.++..++++||++++++|.+++.++
T Consensus       348 ~~~~~~~a~~i~~~l~~~Gvlv~~~-----------------------g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~  404 (408)
T PRK04612        348 APAHAGQAGAILDLAAEHGLLLLQA-----------------------GPDVLRFVPALNLTDAELADGLARLRLALADY  404 (408)
T ss_pred             cCchhhHHHHHHHHHHHCCeEEeeC-----------------------CCCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence            421   1344555554  6666432                       12789999999999999999999999999775


Q ss_pred             Hh
Q psy8850         374 RE  375 (397)
Q Consensus       374 ~~  375 (397)
                      .+
T Consensus       405 ~~  406 (408)
T PRK04612        405 VA  406 (408)
T ss_pred             hh
Confidence            43

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.84  E-value=8.2e-18  Score=154.99  Aligned_cols=303  Identities=14%  Similarity=0.126  Sum_probs=193.9

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|.+.+++.+++....- ... .     ...+...++.+.++++.+.  +.+++++|||+|++++++.... + ..
T Consensus        38 lGh~~p~v~~ai~~ql~~~~~-~~~-~-----~~~~~~~~la~~l~~~~~~--~~v~~~~SGseA~e~Alklar~-~-~g  106 (364)
T PRK04013         38 LGHNHPEWVEEMSEQLEKLVV-AGP-M-----FEHEEKEEMLEELSKWVNY--EYVYMGNSGTEAVEAALKFARL-Y-TG  106 (364)
T ss_pred             CCCCCHHHHHHHHHHHHhcCC-ccC-C-----cCCHHHHHHHHHHHhhcCC--CEEEEeCchHHHHHHHHHHHHH-H-hC
Confidence            446789999999999986321 111 1     1134567788888888764  4899999999999999997654 3 23


Q ss_pred             CCEEEEcCCCChhhHHHHHHHh-h----CCc-----EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc-
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLE-N----DGF-----RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-  154 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~-~----~g~-----~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~-  154 (397)
                      +++|+....+|++.....-.+. .    .+.     .+..+|.+     |++.+++.+.+++++|++++.+...|...+ 
T Consensus       107 r~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~  181 (364)
T PRK04013        107 RKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFN-----DVEAAKEAITKETAAVIFEPIQGEGGIVPAK  181 (364)
T ss_pred             CCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCC-----CHHHHHHHhcCCcEEEEEcCCcCCCCCcCCC
Confidence            4778877777776654433211 0    011     12223322     788999999889999999999988887654 


Q ss_pred             ---HHHHHHHHHhcCcEEEEeccccc---Ccc-ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC
Q psy8850         155 ---ILEIGELCRSKGVIFHCDAAQAV---GKI-DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       155 ---l~~i~~l~~~~gi~livD~a~~~---~~~-~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                         ++++.++|++||+++|+|++++.   |.. ..+.....+|+++++  | +.|+..+|.++.+.+..    +..    
T Consensus       182 ~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~g--K~lggG~P~~a~~~~~~~~----~~~----  251 (364)
T PRK04013        182 EEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMG--KGIGNGVPVSLTLTNFDVE----RGK----  251 (364)
T ss_pred             HHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEec--ccccCCceeEEEEeccccc----CCC----
Confidence               89999999999999999999872   211 112223468999987  9 65545578888875531    111    


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL  306 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (397)
                        ...+.+ .|...+++..++++.+.+  +++.++.++.   + +.+..  +.   +.+ -...+.++-+.+.. +...+
T Consensus       252 --~~~T~~-gnp~~~aaa~a~l~~i~~--~~l~~~~~~~---l-~~l~~--~~---v~~-vRG~Gl~~gve~~~-~~~~i  315 (364)
T PRK04013        252 --HGSTFG-GNPLACKAVAVTLRILRR--ERLVEKAGEK---F-IEIKG--ER---VVT-TRGRGLMIGIVLKK-PVGKY  315 (364)
T ss_pred             --cCCCCC-cCHHHHHHHHHHHHHHHh--ccHHHHHHHH---H-HHhcc--Cc---cee-eeeCcEEEEEEeCC-cHHHH
Confidence              112233 344555555578888765  2333333332   2 22222  21   111 11124455556643 23455


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ...+.  |+.+.+.                       +.+.+||.++..++++++++++++|.+++.++
T Consensus       316 ~~~~~~~Gll~~~~-----------------------g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~  361 (364)
T PRK04013        316 VEELQNRGYLVHTA-----------------------GQRVIRLLPPLIISKDTMEEAKSAIEGVINDI  361 (364)
T ss_pred             HHHHHhCCcEEeeC-----------------------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence            55544  6666432                       12789999999999999999999999998754

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.84  E-value=3.6e-18  Score=162.59  Aligned_cols=331  Identities=9%  Similarity=0.068  Sum_probs=198.0

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-----CCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-----DPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +..+|.+.+++++++..... ...    ... ..+...++.+.|++++..     ..+.++|++||++|++.+++....+
T Consensus        79 Gh~~p~i~~Ai~~q~~~l~~-~~~----~~~-~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~  152 (472)
T PRK08742         79 GHAEPRIGAAIAAQAGELEQ-VML----AGF-THEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHY  152 (472)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-ccc----ccc-CCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHH
Confidence            46789999999999875221 110    011 123456777888887743     2347999999999999999966543


Q ss_pred             hc----cCCCEEEEcCCCChhhHHHHHHHhhC-C---------cEEEEeccCCCCC------------CCHHHHHHHhc-
Q psy8850          82 YK----KRGKHIITVQTEHKSVLDSIRKLEND-G---------FRVTYLKPKNNGL------------ITLSQLEEKIC-  134 (397)
Q Consensus        82 ~~----~~g~~vl~~~~~~~s~~~~~~~~~~~-g---------~~v~~v~~~~~~~------------~d~~~l~~~i~-  134 (397)
                      +.    ..+.+|+....+|++........... .         ..+..+|......            -+++.+++.+. 
T Consensus       153 ~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~  232 (472)
T PRK08742        153 FHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ  232 (472)
T ss_pred             HHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh
Confidence            21    12356776666666654333222110 0         1123344321110            12566777764 


Q ss_pred             --CCceEEEEec-ccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccC
Q psy8850         135 --SDTILVSVML-VNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYG  201 (397)
Q Consensus       135 --~~~~~v~~~~-~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g  201 (397)
                        +++.+|+++. +++..|.+.|    ++.+.++|++||+++|+|+++. +|..-    .+.....+|+++++  | +.|
T Consensus       233 ~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~g--Kgl~g  310 (472)
T PRK08742        233 SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLS--KGLTG  310 (472)
T ss_pred             CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEc--ccccC
Confidence              4688999998 5778887665    7899999999999999999986 33321    22233468999998  9 655


Q ss_pred             C-CCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcE
Q psy8850         202 P-KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI  280 (397)
Q Consensus       202 ~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  280 (397)
                      + ..+|.++++++..+.+......+......+.+. +...+++..++++.+.+  +++.++..++.++|++.++. +...
T Consensus       311 G~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~g-npl~~Aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~~~~-~~~~  386 (472)
T PRK08742        311 GFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTG-NPLACAAALATLDIFAD--DDVIARNQPTAARMTQLAAQ-IGEH  386 (472)
T ss_pred             CCCCcceeeccHHHHHHhhccCccCccCcCCCCCc-cHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHH-HhcC
Confidence            4 258999988766444321100010111122222 44556666688888765  34555666666666655544 3222


Q ss_pred             EEeCCCCCCCCceEEEEecCC-C-------h----HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceE
Q psy8850         281 YINGDMNNRIPHNLNISFNFI-E-------G----ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI  346 (397)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~-~-------~----~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i  346 (397)
                      .++.+ -...+.++-+.|... .       .    ..+...+.  |+.+.+.                        ++.|
T Consensus       387 ~~i~d-vRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~------------------------g~vi  441 (472)
T PRK08742        387 PHVAD-VRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL------------------------GDVL  441 (472)
T ss_pred             CCeee-EeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec------------------------CCEE
Confidence            22211 111244555665321 1       0    12333332  6665431                        2789


Q ss_pred             EEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         347 RFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       347 Ri~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      ||.++..++++|||+++++|.++++++-
T Consensus       442 ~~~PpL~it~~ei~~~~~~l~~~l~~~~  469 (472)
T PRK08742        442 YWMPPYCVDEAQLALLADTTRHAIDEAV  469 (472)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999997753

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.84  E-value=4.2e-18  Score=162.20  Aligned_cols=330  Identities=11%  Similarity=0.103  Sum_probs=203.8

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh---c
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY---K   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~---~   83 (397)
                      +..+|.|.+++++++..... .    ...+ ...+...++.+.|++++....+.++|++||++|++.+++....++   .
T Consensus        62 Gh~~p~v~~Ai~~ql~~l~~-~----~~~~-~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g  135 (466)
T PRK07030         62 GHANPRINQRIKDQVDQLEH-V----ILAG-FSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRG  135 (466)
T ss_pred             CCCCHHHHHHHHHHHHhcCC-c----cccc-cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhC
Confidence            56789999999999976211 0    0001 113456678888888775444579999999999999999664331   1


Q ss_pred             -cCCCEEEEcCCCChhhHHHHHHHhhC-----C-----cEEEEeccCCCCC------------CCHHHHHHHhc---CCc
Q psy8850          84 -KRGKHIITVQTEHKSVLDSIRKLEND-----G-----FRVTYLKPKNNGL------------ITLSQLEEKIC---SDT  137 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~~~~~~~~~-----g-----~~v~~v~~~~~~~------------~d~~~l~~~i~---~~~  137 (397)
                       ..+.+|+....+|++.......+...     +     ..+..+|......            -+++++++.+.   +++
T Consensus       136 ~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~i  215 (466)
T PRK07030        136 KPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEI  215 (466)
T ss_pred             CCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCce
Confidence             12356766666666654333222110     0     1123333322110            12466777774   467


Q ss_pred             eEEEEec-ccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCc
Q psy8850         138 ILVSVML-VNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGI  205 (397)
Q Consensus       138 ~~v~~~~-~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~  205 (397)
                      .+|+++. ++...|.+.|    ++++.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+ ..+
T Consensus       216 AAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~Pi  293 (466)
T PRK07030        216 AAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLS--KALTGGYLPL  293 (466)
T ss_pred             EEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeee--hhccCCcccc
Confidence            8999998 5888888766    7899999999999999999976 3322    112234468999997  9 6554 358


Q ss_pred             eEEEEecCCCCccccccc-cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850         206 GALYIRRNPRTRIEAQIH-GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       206 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  284 (397)
                      |.++++++..+.+..... .+......+.+ .|...+++..++|+.+.+  .++.++..++.++|++.|++ +.....+.
T Consensus       294 ~av~~~~ei~~~~~~~~~~~~~~~h~~T~~-gnpla~aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~~-l~~~~~v~  369 (466)
T PRK07030        294 AAVLTTDTVYQAFYDDYPTLRAFLHSHSYT-GNPLACAAALATLDIFEQ--DNVIENNRALARRMAEATAH-LADHPHVA  369 (466)
T ss_pred             eEEEecHHHHHHHhcccccccccccCCCCC-CCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HhcCCCEE
Confidence            999998776544321100 00001112222 344556666678888866  45677888888888888877 42221111


Q ss_pred             CCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850         285 DMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI  350 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  350 (397)
                      . -...+.++.+.+....            ...+...+.  |+.+.+.                        ++.+|+.+
T Consensus       370 ~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~------------------------g~~i~~~P  424 (466)
T PRK07030        370 E-VRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL------------------------GSVVYFLP  424 (466)
T ss_pred             E-eEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec------------------------CCEEEEEC
Confidence            1 1112445555553211            013333332  6665431                        26799999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         351 GRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       351 ~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +..++++||++++++|.++++++
T Consensus       425 pl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        425 PYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             CccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987

>PRK07036 hypothetical protein; Provisional

Probab=99.83  E-value=4.8e-18  Score=161.98  Aligned_cols=338  Identities=14%  Similarity=0.156  Sum_probs=204.6

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|+|.+++.+++....-..   .+  .....+...++.+.|+++.....+.++|++||++|++.+++.......   
T Consensus        66 Gh~~p~v~~Ai~~q~~~~~~~~---~~--~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g  140 (466)
T PRK07036         66 GYGREEMADAIADQARRLPYYT---PF--GDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRG  140 (466)
T ss_pred             CCCCHHHHHHHHHHHHhCcccc---cc--cccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcC
Confidence            4668999999999987621000   01  001134456778888887654445799999999999999996543211   


Q ss_pred             -cCCCEEEEcCCCChhhHHHHHHHh-hCC---------cEEEEeccCCC----CCC--------CHHHHHHHhc----CC
Q psy8850          84 -KRGKHIITVQTEHKSVLDSIRKLE-NDG---------FRVTYLKPKNN----GLI--------TLSQLEEKIC----SD  136 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~~~~~~~-~~g---------~~v~~v~~~~~----~~~--------d~~~l~~~i~----~~  136 (397)
                       ..+.+|+....+|++.......+. ..+         ..+..+|....    ...        .++.+++.+.    ++
T Consensus       141 ~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  220 (466)
T PRK07036        141 RPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADN  220 (466)
T ss_pred             CCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCc
Confidence             123677777766666543322221 100         11333333211    001        1244555553    46


Q ss_pred             ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc--c--c-cCcccccEEEecccc-ccCC-CC
Q psy8850         137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID--I--N-IQNYKVDLMSFSAHK-IYGP-KG  204 (397)
Q Consensus       137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~--~--~-~~~~~~d~~~~s~~K-~~g~-~g  204 (397)
                      +.+|+++.++...|.+.|    ++.+.++|++||+++|+|++++ +|..-  +  . .....+|+++++  | +.|+ ..
T Consensus       221 iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~g--K~l~gG~~P  298 (466)
T PRK07036        221 IAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFA--KGLTSGYQP  298 (466)
T ss_pred             eEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEc--cccccCccc
Confidence            889999999988898877    8999999999999999999985 43321  1  1 223468999887  9 6554 25


Q ss_pred             ceEEEEecCCCCccccc-cccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEe
Q psy8850         205 IGALYIRRNPRTRIEAQ-IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN  283 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  283 (397)
                      +|.++++++..+.+... ..+.......+.+. +...+++..++|+.+.+  .++.++..++.++|++.|++ +....++
T Consensus       299 i~av~~~~~i~~~~~~~~~~~~~~~~~~T~~g-npl~~aaa~a~Le~i~~--~~l~~~~~~~g~~l~~~L~~-l~~~~~v  374 (466)
T PRK07036        299 LGAVIISERLLDVISGPNAKGNVFTHGFTYSG-HPVACAAALKNIEIMER--EGLCEHVREVGPYFEERLAS-LRELPLV  374 (466)
T ss_pred             cEEEEEcHHHHHHHhcccCcCcccccCCCCCC-CHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-hccCCCE
Confidence            89999987765544321 00100111122333 44556666688887765  45777888888888888866 4322211


Q ss_pred             CCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850         284 GDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT  349 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (397)
                      .. -...+.++.+.|....            ...+...+.  |+.+.+.                        ++.+|++
T Consensus       375 ~~-vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~------------------------~~~~~l~  429 (466)
T PRK07036        375 GD-VRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL------------------------EHLCVLS  429 (466)
T ss_pred             EE-EEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec------------------------CCEEEEe
Confidence            11 0112455566663211            112333332  5555431                        2678999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHHHhcCccc
Q psy8850         350 IGRFTTEKEIDFTIKLLKMKVKKLRELSPLW  380 (397)
Q Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~  380 (397)
                      ++..+|++|||+++++|.++++++.+...+.
T Consensus       430 Ppl~it~~~id~~~~~l~~al~~~~~~~~~~  460 (466)
T PRK07036        430 PPLIITRAQIDEIVAILRAAIEETADELAAH  460 (466)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998886544443

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.83  E-value=2.4e-18  Score=158.40  Aligned_cols=306  Identities=18%  Similarity=0.159  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHH-HHHHhhCCcEEEEecc
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-IRKLENDGFRVTYLKP  118 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~-~~~~~~~g~~v~~v~~  118 (397)
                      .+...++++.+++++|.+  .+++++|||.|++++....+    ++||+|  +.+.|.....+ +...   |...+.++.
T Consensus        70 ~~s~~~lE~~va~~~G~~--~av~v~sGT~Al~ll~~l~l----~pGDeV--psn~~f~Tt~ahIe~~---Gav~vDi~~  138 (450)
T TIGR02618        70 SRNFYHLERTVRELYGFK--YVVPTHQGRGAENLLSQIAI----KPGDYV--PGNMYFTTTRYHQEKN---GATFVDIII  138 (450)
T ss_pred             CCcHHHHHHHHHHHHCCC--eEEEcCCHHHHHHHHHHhCC----CCcCEE--CCceeHHHHHHHHHhC---CeEEEeeec
Confidence            345788999999999988  79999999999887655554    789977  55666555554 5444   766655543


Q ss_pred             C----------CCCCCCHHHHHHHhcC----CceEEEEecccCcc-ccccc---HHHHHHHHHhcCcEEEEecccccCcc
Q psy8850         119 K----------NNGLITLSQLEEKICS----DTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI  180 (397)
Q Consensus       119 ~----------~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~t-G~~~~---l~~i~~l~~~~gi~livD~a~~~~~~  180 (397)
                      +          .+|.+|+++++++|++    ++++|+++.++|.. |...|   ++++.++|++||++||.|+++.++..
T Consensus       139 dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA  218 (450)
T TIGR02618       139 DEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENA  218 (450)
T ss_pred             ccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhCh
Confidence            2          3688999999999986    34577888787765 78755   68999999999999999999987542


Q ss_pred             cc-----------cc----C--cccccEEEecccc-ccCCCCceEEEEecC-CCCccccc--cccCCccccccCCCCchh
Q psy8850         181 DI-----------NI----Q--NYKVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQ--IHGGGHEYGLRSGTLATH  239 (397)
Q Consensus       181 ~~-----------~~----~--~~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~  239 (397)
                      .+           ++    .  .-.+|.+++|++| .+++.| |++..+++ +.++++..  ..+|.    ...|.....
T Consensus       219 ~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~eG~----~tyGgla~r  293 (450)
T TIGR02618       219 YFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVVFEGM----PSYGGLAGR  293 (450)
T ss_pred             hhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhhcCCc----cccCchhhh
Confidence            21           11    0  1158999999999 777876 77775544 44444333  22221    223444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec----CCC-----hHHHHHHh
Q psy8850         240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN----FIE-----GESLLMAI  310 (397)
Q Consensus       240 ~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~l  310 (397)
                      .+.++..+++...+  ..+.++.....++|.+.|.+  .|+.+..+.+   ++.+.+...    .++     ...+...|
T Consensus       294 ~~~ala~gL~e~~~--~~y~~~r~~~a~~La~~L~~--~Gvpv~~p~g---gh~V~vda~~~lph~~~~~~p~~al~~~l  366 (450)
T TIGR02618       294 DMEAMAIGIREAVD--YEYIEHRVKQVRYLGDKLKA--AGVPIVEPVG---GHAVFLDARRFLPHIPQDQFPAQSLAASI  366 (450)
T ss_pred             hHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHH--CCCcccCCCC---cceEEEEhHHhCCCCChhhChHHHHHHHH
Confidence            66666667776544  24555666678899999998  4887765544   455555432    232     34444444


Q ss_pred             C---CcE-ecccCccCCCCCChhhHHHhhCCCcccc--CceEEEeeC-CCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy8850         311 K---DIA-VSSGSACTSASLEPSYVLRALGCNDELA--HSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKLRELS  377 (397)
Q Consensus       311 ~---~i~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~--~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~~~~~  377 (397)
                      -   ||. +.-|+.......+.         .....  -..+|+.++ -.-|.+.+|..+++|..+.++-..+.
T Consensus       367 y~~~gir~~e~g~~~~~~~~~~---------~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~~~  431 (450)
T TIGR02618       367 YVETGVRSMERGIVSAGRNNVT---------GEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDDIR  431 (450)
T ss_pred             HHHhCccEEeecceecccCCCC---------CcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhhcC
Confidence            3   432 22232211100000         00111  267999987 33579999999999998887765554

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.83  E-value=1.1e-17  Score=159.34  Aligned_cols=325  Identities=14%  Similarity=0.099  Sum_probs=197.4

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC---CcEEEe-CChhHHHHHHHHHhHhhh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP---REIIWT-SGATESNNLAIKGAAHFY   82 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~i~~~-~g~t~a~~~~l~~l~~~~   82 (397)
                      +..+|.|.+++++++......     +.. ....+...++.+.|.+++..+.   +.++|+ +||++|++.+++... .+
T Consensus        78 Gh~~p~v~~Ai~~ql~~~~~~-----~~~-~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr-~~  150 (464)
T PRK06938         78 GHNHPVVIEAIQQVLADELPL-----HTL-DLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVK-TA  150 (464)
T ss_pred             CCCCHHHHHHHHHHHHhhhcc-----ccc-ccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHH-Hh
Confidence            467899999999998642210     100 1112344566677777664321   256665 799999999999644 44


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhh-C-------C--cEEEEeccCCCCC------------CCHHHHHHHhcC-----
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLEN-D-------G--FRVTYLKPKNNGL------------ITLSQLEEKICS-----  135 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~-~-------g--~~v~~v~~~~~~~------------~d~~~l~~~i~~-----  135 (397)
                      ++ +.+|+....+|++.......+.. .       +  ..+..+|.+....            .+++.+++.+.+     
T Consensus       151 tg-r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  229 (464)
T PRK06938        151 TG-RSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGV  229 (464)
T ss_pred             hC-CCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCC
Confidence            34 45666666656555433332211 0       0  1234454432110            136778887753     


Q ss_pred             -CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCC
Q psy8850         136 -DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKG  204 (397)
Q Consensus       136 -~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g  204 (397)
                       ++.+|+++.++...|.+.|    ++++.++|++||+++|.|+++. +|..    ..+.....+|+++++  | +.|+..
T Consensus       230 ~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~g--KglggG~P  307 (464)
T PRK06938        230 VLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLS--KAIGGSLP  307 (464)
T ss_pred             CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEee--ccccCCCc
Confidence             5789999999988888766    7899999999999999999986 3321    112223468999998  9 665556


Q ss_pred             ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850         205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  284 (397)
                      +|.++++++. ..+.+..      ...+.+. |...+++..++|+.+.+  .++.++.+++.++|.+.|++......++.
T Consensus       308 lsAv~~~~~~-~~~~~~~------~~~T~~g-npla~Aaa~a~L~~l~~--~~l~~~~~~~G~~l~~~L~~l~~~~~~i~  377 (464)
T PRK06938        308 LAVVVYREWL-DTWQPGA------HAGTFRG-NQMAMAAGSATLRYIKE--HRLAEHAAAMGERLREHLRQLQRDYPQLG  377 (464)
T ss_pred             eEEEeehhHh-hccCCCC------CCCCCCc-CHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence            8999988653 3332211      1122333 34455555578887765  45667777778888887776212222221


Q ss_pred             CCCCCCCceEEEEecCCC---------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         285 DMNNRIPHNLNISFNFIE---------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      .- ...+.++.+.|....               ...+...+.  |+.+.++.                     ..++.||
T Consensus       378 ~V-rG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g---------------------~~~~~l~  435 (464)
T PRK06938        378 DV-RGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGG---------------------RHGSVVR  435 (464)
T ss_pred             ee-eccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecC---------------------CCCCEEE
Confidence            11 112445556663210               112333332  66654321                     0137899


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.++..+|++|++++++++.+++.++
T Consensus       436 ~~Ppl~it~~eid~~~~~l~~~l~~~  461 (464)
T PRK06938        436 FLPPLIITAEQIDEVAEIFAEAVAAA  461 (464)
T ss_pred             EECCCccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998765

>KOG1402|consensus

Probab=99.83  E-value=3.7e-18  Score=146.18  Aligned_cols=314  Identities=16%  Similarity=0.163  Sum_probs=212.4

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhh-HHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-cc
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWT-AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-KK   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-~~   84 (397)
                      +..+|.++++++++.+...        ..++. ......+..+.+.++++.+  .+.-++.|.+|++.+++..+.|- ..
T Consensus        74 Ghchpki~~aLqeq~~kLt--------lssrafYnd~~~~f~~~vt~lf~~~--kvlpmnTGaEa~Eta~KLaR~wgy~~  143 (427)
T KOG1402|consen   74 GHCHPKIIKALQEQADKLT--------LSSRAFYNDVLGEFAEYVTKLFGYD--KVLPMNTGAEAVETACKLARKWGYRK  143 (427)
T ss_pred             CCCCHHHHHHHHHHHhHhh--------hhhHHHhhhhHHHHHHHHHHhcCcc--eeeecccchhHHHHHHHHHHHHHHhh
Confidence            3568999999999887632        11111 1357788899999999987  68888988999999999665332 11


Q ss_pred             ---C--CCEEEEcCCCChh-hHHHH---------HHHhhC-CcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccC
Q psy8850          85 ---R--GKHIITVQTEHKS-VLDSI---------RKLEND-GFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNN  147 (397)
Q Consensus        85 ---~--g~~vl~~~~~~~s-~~~~~---------~~~~~~-g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~  147 (397)
                         |  ..+|+.....|.+ +..++         +.++.. ...+..||++     |.++|+.++.+ +.+.++++.++.
T Consensus       144 K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~-----d~eale~~l~~~~vaaFivEPIQG  218 (427)
T KOG1402|consen  144 KNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG-----DAEALEVALKSPNVAAFIVEPIQG  218 (427)
T ss_pred             ccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC-----CHHHHHHHhcCCCeeEEEeecccc
Confidence               1  2344444444332 22222         111111 1124455554     89999999875 788999999999


Q ss_pred             ccccccc----HHHHHHHHHhcCcEEEEecccccCc-----cccccCcccccEEEecccc-ccC-CCCceEEEEecCCCC
Q psy8850         148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHK-IYG-PKGIGALYIRRNPRT  216 (397)
Q Consensus       148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K-~~g-~~g~g~~~~~~~~~~  216 (397)
                      ..|++.|    +++..++|++|++++|.|++|+.-.     +..+.....+|++.+.  | +.| ....+.++++++.+.
T Consensus       219 EaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilg--KalSGG~~Pvsavl~~~~im~  296 (427)
T KOG1402|consen  219 EAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILG--KALSGGVYPVSAVLADDDIML  296 (427)
T ss_pred             ccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEe--ccccCCeeeeEEEEecHHHHh
Confidence            9999888    7999999999999999999997322     2445666689999988  9 544 445788888887776


Q ss_pred             ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-EE-EeCCCCCCCCceE
Q psy8850         217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE-IY-INGDMNNRIPHNL  294 (397)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~-~~~~~~~~~~~~~  294 (397)
                      .+++--+|      .+.|..+ .+.....++|+.+.+  +++.++...+...|+..|.+ ++. +. +... ....+.+.
T Consensus       297 ~~~pgeHg------sTyggNp-Lg~~vaiAalevi~e--ekL~era~~lG~~l~~~L~~-l~~~~p~~v~~-VRGrGl~~  365 (427)
T KOG1402|consen  297 NIKPGEHG------STYGGNP-LGCAVAIAALEVIVE--EKLVERAAKLGEILRDQLNK-LQKKFPHVVKE-VRGRGLLN  365 (427)
T ss_pred             ccCCCccc------cccCCCh-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh-ccccccchhhe-eeccceEE
Confidence            66665544      4445544 444444489998877  78889999999999999988 532 10 0111 11113344


Q ss_pred             EEEec-----CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         295 NISFN-----FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       295 ~~~~~-----~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                      .+.+.     +.++.++...++  |+...+..                       ++.|||.++..++++|+++.+++|.
T Consensus       366 ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH-----------------------~~IiRfaPPL~I~e~dl~eg~e~i~  422 (427)
T KOG1402|consen  366 AIVINPSKTSGQDAWDVCLALKENGLLAKPTH-----------------------GNIIRFAPPLVISEEDLREGIEAIE  422 (427)
T ss_pred             EEEeccccccchhHHHHHHcccccccccCCCC-----------------------CCeEEecCCcccCHHHHHHHHHHHH
Confidence            44443     233445555554  44444321                       3789999999999999999999999


Q ss_pred             HHHH
Q psy8850         368 MKVK  371 (397)
Q Consensus       368 ~~~~  371 (397)
                      +.+.
T Consensus       423 k~i~  426 (427)
T KOG1402|consen  423 KTIA  426 (427)
T ss_pred             HHhc
Confidence            8764

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.83  E-value=1.5e-17  Score=157.87  Aligned_cols=322  Identities=15%  Similarity=0.139  Sum_probs=189.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      +..++.+.+++.+++.... .... ..   .. .+...++.+.+++..+.+. +.++|++||++|++.+++.. +.++++
T Consensus        56 Gh~~~~i~~a~~~~~~~~~-~~~~-~~---~~-~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alkla-r~~~~r  128 (425)
T PRK08088         56 GHLHPKVVAAVEAQLKKLS-HTCF-QV---LA-YEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR  128 (425)
T ss_pred             CCCCHHHHHHHHHHHhhCC-Cccc-cc---cC-CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHH-HHHhCC
Confidence            4568999999999997622 1111 00   01 1233467777777776443 47999999999999999964 444455


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhC------Cc-----EEEE--eccCCCCCCC----HHHHHHHhc-----CCceEEEEe
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLEND------GF-----RVTY--LKPKNNGLIT----LSQLEEKIC-----SDTILVSVM  143 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~------g~-----~v~~--v~~~~~~~~d----~~~l~~~i~-----~~~~~v~~~  143 (397)
                      ++.|.+ .++|++.......+...      |.     .+..  +|.+.++ .+    ++++++++.     ++.++|+++
T Consensus       129 ~~iv~~-~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~~~~~~~aavi~E  206 (425)
T PRK08088        129 SGVIAF-TGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG-VSEDDAIASIERIFKNDAAPEDIAAIIIE  206 (425)
T ss_pred             CeEEEE-CCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccC-ccHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence            444444 66666655444443210      11     0111  2222221 22    456888775     457888999


Q ss_pred             cccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCCCCceEEEEecC
Q psy8850         144 LVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN  213 (397)
Q Consensus       144 ~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~  213 (397)
                      .+....|.+.+    +++|.++|++||+++|+|++|+. +..    .++.....+|+  .|++| +.++..+|+++++++
T Consensus       207 pi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi--~s~sK~l~~G~rig~v~~~~~  284 (425)
T PRK08088        207 PVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADL--TTFAKSIAGGFPLAGVTGRAE  284 (425)
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCE--EEEeccccCCCcceeeEecHH
Confidence            88877787666    78999999999999999999873 221    11122224554  56669 544344899999877


Q ss_pred             CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCC
Q psy8850         214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRI  290 (397)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~  290 (397)
                      ..+.+.....      ....+ .+....++..+.++....  ++..+++++..+++++.|.+.   .+.+..+...    
T Consensus       285 ~~~~~~~~~~------~~t~~-~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~----  351 (425)
T PRK08088        285 VMDAIAPGGL------GGTYA-GNPIACAAALAVLKVFEQ--ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL----  351 (425)
T ss_pred             HHhhcCCCCC------CCCCC-cCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc----
Confidence            6555543221      12222 344455555567766543  233334444444444443331   3432222211    


Q ss_pred             CceEEEEecC-CC--------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHH
Q psy8850         291 PHNLNISFNF-IE--------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI  359 (397)
Q Consensus       291 ~~~~~~~~~~-~~--------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i  359 (397)
                      +.++++.+.. .+        ...+...+.  |+.+.++..+                     .+.||++++..+++++|
T Consensus       352 G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~---------------------~~~iRl~~~~~~t~~ei  410 (425)
T PRK08088        352 GAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPY---------------------YNVLRILVPLTIEDAQI  410 (425)
T ss_pred             ceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCC---------------------CCEEEEECCCCcCHHHH
Confidence            4566777631 11        344554443  6665542111                     27899999988899999


Q ss_pred             HHHHHHHHHHHHHH
Q psy8850         360 DFTIKLLKMKVKKL  373 (397)
Q Consensus       360 ~~~~~~l~~~~~~~  373 (397)
                      ++.+++|.+++...
T Consensus       411 ~~~i~~l~~~l~~~  424 (425)
T PRK08088        411 RQGLEIIAQCFDEA  424 (425)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998754

>PRK07483 hypothetical protein; Provisional

Probab=99.83  E-value=1e-17  Score=158.82  Aligned_cols=339  Identities=15%  Similarity=0.134  Sum_probs=200.2

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|.|.+++++++.... ..+. .    ....+...++.+.|+++.....+.++|++||++|++.+++.....+.  
T Consensus        44 lGh~~p~v~~av~~ql~~~~-~~~~-~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~  117 (443)
T PRK07483         44 LGHSHPRVIAAIHAQIDRLA-YAHT-S----FFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEI  117 (443)
T ss_pred             cCCCCHHHHHHHHHHHHhcc-Cccc-c----ccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhc
Confidence            34678999999999998631 0011 0    01123456778888887754345899999999999999996543320  


Q ss_pred             --cCCCEEEEcCCCChhhH-HHHHHHhhC------C---cEEEEeccCCCCC-C------------CHHHHHHHhc----
Q psy8850          84 --KRGKHIITVQTEHKSVL-DSIRKLEND------G---FRVTYLKPKNNGL-I------------TLSQLEEKIC----  134 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~-~~~~~~~~~------g---~~v~~v~~~~~~~-~------------d~~~l~~~i~----  134 (397)
                        ..+.+|+....+|++.. .+.......      +   ..+..++...... .            .++++++++.    
T Consensus       118 g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (443)
T PRK07483        118 GQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGP  197 (443)
T ss_pred             CCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence              12356666555555554 333321100      0   1122233221110 0            1356776553    


Q ss_pred             CCceEEEEecccC-ccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCC
Q psy8850         135 SDTILVSVMLVNN-EIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPK  203 (397)
Q Consensus       135 ~~~~~v~~~~~~~-~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~  203 (397)
                      +++.+|+++.++. ..|.+.|    ++.+.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+.
T Consensus       198 ~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~gG~  275 (443)
T PRK07483        198 DTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIA--KGLGAGY  275 (443)
T ss_pred             CceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeeh--hhhccCc
Confidence            4678999999886 3577665    7899999999999999999986 3322    112223468999987  9 65542


Q ss_pred             -CceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEE
Q psy8850         204 -GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI  282 (397)
Q Consensus       204 -g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  282 (397)
                       .+|.++++++..+.+....  +......+.+. |...+++..++++.+.+  .++.++..++.++|++.|++......+
T Consensus       276 ~Pi~av~~~~~i~~~~~~~~--~~~~h~~T~~g-npl~~aaa~a~l~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~  350 (443)
T PRK07483        276 QPIGAVLASDRIYDAIADGS--GFFQHGHTYLG-HATACAAALAVQRVIAE--DGLLANVRARGEQLRARLRERLGQHPH  350 (443)
T ss_pred             cccEEEEEcHHHHHHHhcCC--CccccCCCCCC-CHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence             5899999876554443210  00011122333 44555566688888765  456777777788888777652122211


Q ss_pred             eCCCCCCCCceEEEEecCC-------C-----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEE
Q psy8850         283 NGDMNNRIPHNLNISFNFI-------E-----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF  348 (397)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  348 (397)
                      +.+- ...+.++-+.+...       +     ...+...+.  |+.+.+.....+                ...++.|||
T Consensus       351 i~~v-RG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~----------------~~~~~~l~~  413 (443)
T PRK07483        351 VGDI-RGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTID----------------GVRGDHVLL  413 (443)
T ss_pred             eeeE-eecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCcccc----------------CCCCCEEEE
Confidence            1110 11144455555311       0     123333333  777654211000                001378999


Q ss_pred             eeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         349 TIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       349 ~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      .++..++++++|+++++|.+++.++.
T Consensus       414 ~PpL~it~~eid~~~~~l~~~l~~~~  439 (443)
T PRK07483        414 APPFIITAAQIDEIVERLGDAIDAAL  439 (443)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998754

>PRK06149 hypothetical protein; Provisional

Probab=99.82  E-value=1.5e-17  Score=171.81  Aligned_cols=324  Identities=14%  Similarity=0.132  Sum_probs=199.9

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|.|.+++.+++.....+  + .+     ..+...++.+.|++++.-..+.++|++||++|++.+++.. +.++++
T Consensus       597 lGh~hp~v~~Ai~~q~~~l~~~--~-~~-----~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklA-r~~tgr  667 (972)
T PRK06149        597 LGHGHPRLAAAAARQWSLLNTN--S-RF-----HYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLA-WAASGR  667 (972)
T ss_pred             cCCCCHHHHHHHHHHHHhcccc--c-cc-----cCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHH-HHhcCC
Confidence            4557899999999998763211  1 11     1245677888888888543458999999999999999954 344454


Q ss_pred             CCEEEEcCCCChh-hHHHHHHHhh----CC------cEEEEeccCCC--CC---CC-----HHHHHHHhc------CCce
Q psy8850          86 GKHIITVQTEHKS-VLDSIRKLEN----DG------FRVTYLKPKNN--GL---IT-----LSQLEEKIC------SDTI  138 (397)
Q Consensus        86 g~~vl~~~~~~~s-~~~~~~~~~~----~g------~~v~~v~~~~~--~~---~d-----~~~l~~~i~------~~~~  138 (397)
                       .+|+....+|++ +..+......    .+      ..+..++....  +.   .+     .+++++.+.      +++.
T Consensus       668 -~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iA  746 (972)
T PRK06149        668 -RDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLA  746 (972)
T ss_pred             -CeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceE
Confidence             455555555554 4333222110    00      01233332211  11   11     234444332      3678


Q ss_pred             EEEEecccCccccccc----HHHHHHHHHhcCcEEEEeccc-ccCccc-----cccCcccccEEEecccc-ccCCCCceE
Q psy8850         139 LVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQ-AVGKID-----INIQNYKVDLMSFSAHK-IYGPKGIGA  207 (397)
Q Consensus       139 ~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~-~~~~~~-----~~~~~~~~d~~~~s~~K-~~g~~g~g~  207 (397)
                      +|+++.+....|.+.|    ++++.++|++||+++|+|+++ ++|...     .......+|+++++  | +.|+..+|+
T Consensus       747 avI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~g--K~lg~G~Pl~a  824 (972)
T PRK06149        747 GFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMA--KGMGNGHPLGA  824 (972)
T ss_pred             EEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEec--ccccCCeeeEE
Confidence            9999999988898888    899999999999999999998 454432     11123468999776  9 655556899


Q ss_pred             EEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CcEEEeCCC
Q psy8850         208 LYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI-EEIYINGDM  286 (397)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~  286 (397)
                      ++++++..+.+...  + .  .....+ .|...+++..++|+.+.+  +++.++.+++.++|++.|++ + ....+++.-
T Consensus       825 v~~~~~i~~~~~~~--~-~--~~sT~~-gnP~~~aaala~L~~i~~--e~l~~~~~~~G~~l~~~L~~-l~~~~~~i~~v  895 (972)
T PRK06149        825 VITRREIAEALEAE--G-Y--FFSSTG-GSPVSCRIGMAVLDVLRE--EKLQENARRVGDHLKARLEA-LADRHPLIGAV  895 (972)
T ss_pred             EEEcHHHHhhhccC--C-c--ccCCCC-CCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HHHhCCCeEEE
Confidence            99998766555431  1 0  011122 344555555578888765  45677787778888888876 3 111122110


Q ss_pred             CCCCCceEEEEecCC------C---hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850         287 NNRIPHNLNISFNFI------E---GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT  355 (397)
Q Consensus       287 ~~~~~~~~~~~~~~~------~---~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  355 (397)
                       ...+.++-+.|...      .   ...+...+.  |+.+.+..                     ...+.|||.++..++
T Consensus       896 -rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g---------------------~~~~vl~~~Ppl~it  953 (972)
T PRK06149        896 -HGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTG---------------------DHLNILKIKPPLCLD  953 (972)
T ss_pred             -eecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecC---------------------CCCCEEEEECCCcCC
Confidence             11244555555311      1   123444443  77665421                     012789999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy8850         356 EKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~~~  372 (397)
                      ++++|+++++|.+++.+
T Consensus       954 ~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        954 RESADFFVDMLDRVLTE  970 (972)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999999864

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.82  E-value=3.7e-18  Score=156.31  Aligned_cols=332  Identities=16%  Similarity=0.162  Sum_probs=210.3

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCChhHHHHHHHHHhHhhhcc-
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAHFYKK-   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~i~~~~g~t~a~~~~l~~l~~~~~~-   84 (397)
                      +...+++.+++.+++....-     .+..+....+ -.++.++|+++.. -+-+.++|++|||+|++.+++.....+.. 
T Consensus        59 Gh~~~~i~~Ai~~Q~~~l~~-----~~~~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~  132 (449)
T COG0161          59 GHGRPEIAEAIKKQLDKLPH-----VMFGGFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRAR  132 (449)
T ss_pred             CcCCHHHHHHHHHHHHhCCc-----hhhcccCCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhc
Confidence            35678999999999987321     1122222233 6778888889888 34668999999999999999976654432 


Q ss_pred             --C-CCEEEEcCCCChh-hHHHHHHHhhCC----------cEEEEeccCC------CCC------CCHHHHHHHhc----
Q psy8850          85 --R-GKHIITVQTEHKS-VLDSIRKLENDG----------FRVTYLKPKN------NGL------ITLSQLEEKIC----  134 (397)
Q Consensus        85 --~-g~~vl~~~~~~~s-~~~~~~~~~~~g----------~~v~~v~~~~------~~~------~d~~~l~~~i~----  134 (397)
                        + +.+++.-...|++ +..++.......          ..+..+|...      .+.      -.+++||++|.    
T Consensus       133 G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~  212 (449)
T COG0161         133 GQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGP  212 (449)
T ss_pred             CCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCc
Confidence              2 2346655555544 444433221000          1122233221      111      12567777775    


Q ss_pred             CCceEEEEecccCc-cccccc----HHHHHHHHHhcCcEEEEecccc-cCcc--cc--ccCcccccEEEecccc-c-cCC
Q psy8850         135 SDTILVSVMLVNNE-IGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI--DI--NIQNYKVDLMSFSAHK-I-YGP  202 (397)
Q Consensus       135 ~~~~~v~~~~~~~~-tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~--~~--~~~~~~~d~~~~s~~K-~-~g~  202 (397)
                      ++..+++++..... +|+++|    ++++.++|++|||++|.|++-. +|..  .+  +.....+|+++.+  | + .|.
T Consensus       213 ~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~a--KGLT~GY  290 (449)
T COG0161         213 ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLA--KGLTGGY  290 (449)
T ss_pred             ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeec--ccccccc
Confidence            46789999988877 788776    7999999999999999999854 3332  11  1222468999988  9 5 455


Q ss_pred             CCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEE
Q psy8850         203 KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI  282 (397)
Q Consensus       203 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  282 (397)
                      ..+|.++++++..+.+..-. .+.+..+++.+.++....+++ +.|+.+++  +.+.++.++...+|.+.|.+.+.+...
T Consensus       291 ~Pl~a~l~~~~I~~~~~~~~-~~~f~HG~TYsghPlacAaAl-a~L~i~e~--e~l~~~~~~~~~~l~~~L~~~l~~~p~  366 (449)
T COG0161         291 LPLSAVLTSDRIYEAFSDGD-AGAFMHGHTYSGNPLACAAAL-ANLDILEE--EDLLERVAEIGAYLQAGLQAALADHPL  366 (449)
T ss_pred             hhhHhHhhhHHHHHHHhccc-CCeeccCCccccCHHHHHHHH-HHHHHHHh--cCHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            56899999877665553322 333445566656555555555 77887775  556677778888888888762332222


Q ss_pred             eCCCCCCCCceEEEEecC-CC---------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850         283 NGDMNNRIPHNLNISFNF-IE---------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI  350 (397)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  350 (397)
                      +++- ...+.+..+.+.. ..         ...+...+.  |+.+++.                        +..+=+++
T Consensus       367 VgdV-R~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~------------------------g~~i~~~P  421 (449)
T COG0161         367 VGDV-RGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL------------------------GDVIYLMP  421 (449)
T ss_pred             EEEe-eccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec------------------------CCEEEEcC
Confidence            3221 1113344444432 11         233444442  7888765                        26788999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         351 GRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       351 ~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ++.+|++||+++++++.+.+++..+
T Consensus       422 Pliit~~eid~l~~~l~~al~~~~~  446 (449)
T COG0161         422 PLIITREEIDELVDALREALDETLA  446 (449)
T ss_pred             CccCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999987654

>PRK07481 hypothetical protein; Provisional

Probab=99.82  E-value=1.6e-17  Score=157.96  Aligned_cols=332  Identities=15%  Similarity=0.155  Sum_probs=198.5

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhHhhhc-
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYK-   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~~~~~-   83 (397)
                      .+..+|++.+++++++...... ..  . .+ ...+...++.+.|+++++. ..+.++|++||++|++.+++.....+. 
T Consensus        56 lGh~~p~v~~Ai~~ql~~~~~~-~~--~-~~-~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~  130 (449)
T PRK07481         56 VGHNREEVKEAIVRQLDELEYY-ST--F-DG-TTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKV  130 (449)
T ss_pred             CCCCCHHHHHHHHHHHHhccce-ec--c-cc-cCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHh
Confidence            3467899999999998762210 00  0 00 1124556788888888742 234799999999999999996543321 


Q ss_pred             ---cCCCEEEEcCCCChhhHHHHHHHhh-CC---------cEEEEeccCCC-----CCCCHHH--------HHHHhc---
Q psy8850          84 ---KRGKHIITVQTEHKSVLDSIRKLEN-DG---------FRVTYLKPKNN-----GLITLSQ--------LEEKIC---  134 (397)
Q Consensus        84 ---~~g~~vl~~~~~~~s~~~~~~~~~~-~g---------~~v~~v~~~~~-----~~~d~~~--------l~~~i~---  134 (397)
                         ..+.+|+....+|++.......+.. ..         ..+..++.+..     +.-|++.        +|+.+.   
T Consensus       131 ~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~  210 (449)
T PRK07481        131 RGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQG  210 (449)
T ss_pred             cCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcC
Confidence               1235677777766664432222210 00         11222332211     0013333        344442   


Q ss_pred             -CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-
Q psy8850         135 -SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-  202 (397)
Q Consensus       135 -~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-  202 (397)
                       +++.+|+++.++...|.+.|    ++++.++|++||+++|.|+++. +|..    ..+.....+|+++++  | +.|+ 
T Consensus       211 ~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~  288 (449)
T PRK07481        211 PDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLA--KGITSGY  288 (449)
T ss_pred             CCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEe--ecccCCC
Confidence             46889999999988898776    7899999999999999999976 3322    122233468999987  9 6554 


Q ss_pred             CCceEEEEecCCCCccccccc-cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cE
Q psy8850         203 KGIGALYIRRNPRTRIEAQIH-GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE-EI  280 (397)
Q Consensus       203 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~  280 (397)
                      ..+|+++++++..+.+..... .+......+.+. |...+++..++++.+.+  .++.++.+++.++|.+.|++ +. ..
T Consensus       289 ~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~g-npl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~-l~~~~  364 (449)
T PRK07481        289 VPLGATMVNARIADAFEANADFGGAIMHGYTYSG-HPVACAAALATLDIVVR--EDLPANAAKRGAYLLEGLQP-LKERF  364 (449)
T ss_pred             cCceEEEEcHHHHHHHhccCccccccccCCCCCC-CHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH-HhhcC
Confidence            258999998765444432110 000011122223 34455555578887765  45677778888888888876 32 12


Q ss_pred             EEeCCCCCCCCceEEEEecCC-------C-----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceE
Q psy8850         281 YINGDMNNRIPHNLNISFNFI-------E-----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI  346 (397)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i  346 (397)
                      .++... ...+.++.+.+...       +     ...+...+.  |+.+.+.                        ++.+
T Consensus       365 ~~i~~v-rG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~------------------------g~~i  419 (449)
T PRK07481        365 ELVGDV-RGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS------------------------GTKI  419 (449)
T ss_pred             CCeEEE-eecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec------------------------CCEE
Confidence            222111 11144555555311       1     122333332  6665432                        2568


Q ss_pred             EEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         347 RFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       347 Ri~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ||+++..+|++|||+++++|.++++++
T Consensus       420 ~l~Ppl~it~~eid~~~~~l~~~l~~~  446 (449)
T PRK07481        420 ILSPPLVIQREDVDRIVDALDAGLSAV  446 (449)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            999999899999999999999999764

>PRK07480 putative aminotransferase; Validated

Probab=99.82  E-value=1.3e-17  Score=158.64  Aligned_cols=332  Identities=15%  Similarity=0.120  Sum_probs=198.7

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|.|.+++++++.......   .. .+ ...+...++.+.|+++++...+.++|++||++|++.+++....++.  
T Consensus        64 lGh~~p~v~~Ai~~q~~~~~~~~---~~-~~-~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~  138 (456)
T PRK07480         64 VGYGRKELADAAARQMRELPYYN---TF-FK-TTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALK  138 (456)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCcc---cc-cc-cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence            34668999999999998631100   00 00 1234567788888888764445899999999999999996543321  


Q ss_pred             --cCCCEEEEcCCCChhhHHHHHHHhh-------CC---cEEEEeccCCCC----CCC--------HHHHHHHhc----C
Q psy8850          84 --KRGKHIITVQTEHKSVLDSIRKLEN-------DG---FRVTYLKPKNNG----LIT--------LSQLEEKIC----S  135 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~~~~~~~~~-------~g---~~v~~v~~~~~~----~~d--------~~~l~~~i~----~  135 (397)
                        ..+.+|+....+|++.......+..       .+   ..+..++.+...    ..+        ++.+++.+.    +
T Consensus       139 g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  218 (456)
T PRK07480        139 GKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGAD  218 (456)
T ss_pred             CCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCC
Confidence              1235677766666554422211110       01   011222221100    001        356665552    4


Q ss_pred             CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CC
Q psy8850         136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KG  204 (397)
Q Consensus       136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g  204 (397)
                      ++.+|+++.++...|.+.|    ++.+.++|++||+++|+|+++. +|..-    .+.....+|+++++  | +.|+ ..
T Consensus       219 ~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~gG~~P  296 (456)
T PRK07480        219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIA--KGLTSGYIP  296 (456)
T ss_pred             cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeee--hhhccCCcc
Confidence            6789999999988898777    7899999999999999999985 43321    22233468998887  9 6553 24


Q ss_pred             ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCcEEEe
Q psy8850         205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI-LFLQKRLYNGLMESIEEIYIN  283 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~  283 (397)
                      +|.++++++..+.+...  .+......+.+ .|...+++..++|+.+.+  ..+.++. .++.++|.+.|++ +....++
T Consensus       297 i~av~~~~~i~~~~~~~--~~~~~~~~T~~-gnpl~~Aaa~a~L~~l~~--~~l~~~~~~~~g~~l~~~l~~-l~~~~~i  370 (456)
T PRK07480        297 MGAVGVGDRVAEVLIEE--GGEFNHGFTYS-GHPVAAAVALANLRILRD--EGIVERVRDDTGPYLQKRLRE-LADHPLV  370 (456)
T ss_pred             ceEEEEcHHHHHHHhcC--CCCcccCCCCC-cCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHH-hhcCCCe
Confidence            78888887654443110  01011122333 344556666688888765  3455666 4667777777766 4222111


Q ss_pred             CCCCCCCCceEEEEecCCC-------h-----HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850         284 GDMNNRIPHNLNISFNFIE-------G-----ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT  349 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (397)
                      ..- ...+.++-+.|....       .     ..+...+.  |+.+.+.                        ++.+||+
T Consensus       371 ~~v-rG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~------------------------~~~l~~~  425 (456)
T PRK07480        371 GEV-RGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV------------------------GDRMIIS  425 (456)
T ss_pred             eeE-EeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec------------------------CCEEEEE
Confidence            110 111445555553211       0     12322322  6655421                        2679999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         350 IGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ++..++++|||+++++|.+++.++.+
T Consensus       426 Ppl~it~~eid~~~~~l~~al~~~~~  451 (456)
T PRK07480        426 PPLVITHAEIDELVEKARKALDATAA  451 (456)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988744

>PRK07046 aminotransferase; Validated

Probab=99.82  E-value=4.2e-17  Score=154.87  Aligned_cols=313  Identities=15%  Similarity=0.143  Sum_probs=195.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +..+|.+.+++++++..-..      +  +. ..+...++.+.|+++++  .+.+.|++|||+|++.+++.. +.+++ +
T Consensus        90 Gh~~p~i~~Av~~q~~~~~~------~--~~-~~~~~~~lAe~l~~~~~--~~~v~F~nSGtEA~e~AlrlA-R~~TG-r  156 (453)
T PRK07046         90 GHSPAPVARALAEQARRGLT------T--ML-PSEDAAWVGEELARRFG--LPYWQVATTATDANRFVLRWA-RAVTG-R  156 (453)
T ss_pred             CCCCHHHHHHHHHHHHhCCC------C--CC-CCHHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHHHH-HHhhC-C
Confidence            35679999999999876211      1  11 12456678888888875  458999999999999999954 44444 4


Q ss_pred             CEEEEcCCCChhhHHH-HHHHhh--------C-Cc------EEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcc
Q psy8850          87 KHIITVQTEHKSVLDS-IRKLEN--------D-GF------RVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEI  149 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~-~~~~~~--------~-g~------~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~t  149 (397)
                      ++|+.....|++.... ......        . |.      .+..+|.+     |++.+++.+. .+..+|+++..+...
T Consensus       157 ~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~~~vAavi~EPi~g~~  231 (453)
T PRK07046        157 PKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFN-----DLAALEAALADGDVAAVLAEPAMTNI  231 (453)
T ss_pred             CEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCC-----CHHHHHHHhCCCCeEEEEECCCCCCC
Confidence            7787777777665322 211100        0 11      12222322     7899999885 468899999998888


Q ss_pred             ccccc----HHHHHHHHHhcCcEEEEecccc----cCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccc
Q psy8850         150 GVIQP----ILEIGELCRSKGVIFHCDAAQA----VGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA  220 (397)
Q Consensus       150 G~~~~----l~~i~~l~~~~gi~livD~a~~----~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~  220 (397)
                      |.+.|    ++++.++|++||+++|+|++++    .|... ......+|+++++  | +.|+..+|++.++++..+.+.+
T Consensus       232 G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~-~~~gv~PDi~t~g--K~lggG~Pi~av~g~~~i~~~~~~  308 (453)
T PRK07046        232 GMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT-RAHGLEPDFLVVG--KPIAGGVPCAVYGFSAELAERAQA  308 (453)
T ss_pred             CCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh-HHhCCCccceeeh--hhhcCCCcceeeeehHHHHHHHhh
Confidence            88777    7899999999999999999985    33322 1223468999876  9 6655568999998776555432


Q ss_pred             ccc---cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCc-EEEeCCCCCCCCce
Q psy8850         221 QIH---GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEE-IYINGDMNNRIPHN  293 (397)
Q Consensus       221 ~~~---~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~~  293 (397)
                      ...   .+......+.+ .|...+++..++|+.+.+  .+..++..++.++|++.|++.   .+- ..+.+.     +.+
T Consensus       309 ~~~~~~~~~~~~~~T~~-gnpl~~aa~~a~L~~l~~--~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~-----G~~  380 (453)
T PRK07046        309 AKASAPPGHSGIGTTLS-ANALAMAAMRATLAEVMT--EAAYAHMLALAARLAAGLRAVIARHGLPWHVTRV-----GAR  380 (453)
T ss_pred             ccccCCCCCceeCCCCc-ccHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-----CcE
Confidence            110   01000111222 344556666678887754  345666666777777766541   221 122222     334


Q ss_pred             EEEEecCCC-----------h----HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850         294 LNISFNFIE-----------G----ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE  356 (397)
Q Consensus       294 ~~~~~~~~~-----------~----~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~  356 (397)
                      +.+.|....           .    ..+...+.  |+.+.+.                        ++.+++++.  +++
T Consensus       381 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~------------------------~~~~~~~p~--~t~  434 (453)
T PRK07046        381 VEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF------------------------HNMMLVCPA--TTA  434 (453)
T ss_pred             EEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc------------------------cCcEEEeCC--CCH
Confidence            555552111           0    11222222  5555431                        255788875  799


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8850         357 KEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       357 ~~i~~~~~~l~~~~~~~~  374 (397)
                      +|||++++++.++++++.
T Consensus       435 ~did~~~~~~~~~l~~~~  452 (453)
T PRK07046        435 ADVDRLVAAFDACLGELL  452 (453)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999997753

>KOG1404|consensus

Probab=99.82  E-value=3.2e-18  Score=150.01  Aligned_cols=322  Identities=16%  Similarity=0.192  Sum_probs=207.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      +.+..+|.|.+++.+++...+       |.......+.+.++.+.|.+.+.-+-..++|++||++|++++++. .+.+++
T Consensus        63 slGHchP~v~~a~~kQl~~l~-------H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~m-ar~Yt~  134 (442)
T KOG1404|consen   63 SLGHCHPDVVAAAVKQLKKLY-------HTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKM-ARLYTG  134 (442)
T ss_pred             EcCCCChHHHHHHHHhhhhhE-------EeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHH-HHHhcC
Confidence            456788999999999997644       222223344567778888888877666799999999999999994 555656


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhh--CCcE-------EEEecc-C-CCCCC-----------CHHHHHHHhc----CCce
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLEN--DGFR-------VTYLKP-K-NNGLI-----------TLSQLEEKIC----SDTI  138 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~--~g~~-------v~~v~~-~-~~~~~-----------d~~~l~~~i~----~~~~  138 (397)
                      .-|.|-..+..|..+..++.....  +...       +...+. + ..+..           -.+++++.+.    +...
T Consensus       135 ~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vA  214 (442)
T KOG1404|consen  135 NLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVA  214 (442)
T ss_pred             CceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCcee
Confidence            655555655555555544433211  1111       111111 1 00100           1244555542    3467


Q ss_pred             EEEEecccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCCCCceEE
Q psy8850         139 LVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGPKGIGAL  208 (397)
Q Consensus       139 ~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~  208 (397)
                      +++.+.++...|.+.+    +++..++|+++|.++|.|++++. |..    .++-...-+|+++.+  | +.+...+|.+
T Consensus       215 afiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmA--KgiGnG~Pl~AV  292 (442)
T KOG1404|consen  215 AFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMA--KGIGNGFPLGAV  292 (442)
T ss_pred             EEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHH--hhccCCCcceee
Confidence            8899999999898766    79999999999999999999872 221    233333357777666  9 6666678999


Q ss_pred             EEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC
Q psy8850         209 YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN  288 (397)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  288 (397)
                      +.+++....+.....     ..++.+..+....+++ +.++.+.+  +++.++......+|.+.|.+......++++--.
T Consensus       293 vtt~EIa~v~~~~~~-----~fnTyggnP~a~avg~-aVL~Vike--e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG  364 (442)
T KOG1404|consen  293 VTTPEIADVLNQKSS-----HFNTYGGNPVACAVGL-AVLKVIKE--ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRG  364 (442)
T ss_pred             ecCHHHHHHHHhccc-----cccccCCCchhHHHHH-HHHHHHHH--HhHHHHHHHHHHHHHHHHHHHhhcCCceeeccc
Confidence            999876655544332     2345566666666666 77887776  788899999999999999884344555554221


Q ss_pred             CCCceEEEEecCCC----------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850         289 RIPHNLNISFNFIE----------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE  356 (397)
Q Consensus       289 ~~~~~~~~~~~~~~----------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~  356 (397)
                      + +.++=+.+-...          ...+.+.++  |+.+-.|.                     ..++.+||+++..+|+
T Consensus       365 ~-GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~---------------------i~G~vfriaPPlciT~  422 (442)
T KOG1404|consen  365 R-GLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGG---------------------IHGNVFRIAPPLCITK  422 (442)
T ss_pred             c-eeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeeccc---------------------ccceEEEecCCeeccH
Confidence            1 223333332111          123444444  66664332                     1237899999999999


Q ss_pred             HHHHHHHHHH
Q psy8850         357 KEIDFTIKLL  366 (397)
Q Consensus       357 ~~i~~~~~~l  366 (397)
                      +|+|.+++..
T Consensus       423 edi~f~~~~~  432 (442)
T KOG1404|consen  423 EDIDFAVEYF  432 (442)
T ss_pred             HHHHHHHHHH
Confidence            9998887765

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.82  E-value=1.2e-17  Score=162.49  Aligned_cols=312  Identities=13%  Similarity=0.075  Sum_probs=206.0

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-  120 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-  120 (397)
                      .+.+.++.+|+.||++. ..++++|+|.++..++.+++    ++||.|++..++|.|...++.+.   |+.+++++... 
T Consensus       196 ~i~eAe~~AA~~fgAd~-tyfvvNGTS~~n~av~~a~~----~~Gd~VLvdRN~HKSv~haLils---ga~PVYl~P~rn  267 (714)
T PRK15400        196 PHKEAEEYIARVFNADR-SYMVTNGTSTANKIVGMYSA----PAGSTVLIDRNCHKSLTHLMMMS---DVTPIYFRPTRN  267 (714)
T ss_pred             HHHHHHHHHHHHhCCCc-EEEEeCchHHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHHHc---CCeEEEeccccc
Confidence            67889999999999983 68889999999999999988    89999999999999999988887   99999987652 


Q ss_pred             -C---CCCC-----HHHHHHHhcCC-----ceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCc--cc-c-
Q psy8850         121 -N---GLIT-----LSQLEEKICSD-----TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK--ID-I-  182 (397)
Q Consensus       121 -~---~~~d-----~~~l~~~i~~~-----~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~--~~-~-  182 (397)
                       .   +.++     .+.+++++.+.     +..++++++ |.-|.+++++.|+++|+.++  +++|+||+...  .+ + 
T Consensus       268 ~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~  344 (714)
T PRK15400        268 AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE  344 (714)
T ss_pred             ccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccC
Confidence             2   3455     89999998753     236788877 55699999999999999887  69999998322  11 1 


Q ss_pred             ccC--cccc---c--EEEecccc-ccCCCCceEEEEecCCC-CccccccccCCccccccCCCCchhHHHHHHHHHHHHHH
Q psy8850         183 NIQ--NYKV---D--LMSFSAHK-IYGPKGIGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI  253 (397)
Q Consensus       183 ~~~--~~~~---d--~~~~s~~K-~~g~~g~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~  253 (397)
                      +..  ..+.   |  +++.|.|| +.+....+++.++.... +++...+      .-+.+++|+++.++++..+..++..
T Consensus       345 ~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a~------~m~~STSPsY~l~ASLD~a~~~m~~  418 (714)
T PRK15400        345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAY------MMHTTTSPHYGIVASTETAAAMMKG  418 (714)
T ss_pred             CcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHHH------HHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            111  1234   4  99999999 77777778887765321 1121211      1234567888888889888888764


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhcCc------EEEeCCCCCCCCceE-------EEEecCCChHHH-HHHhCCcEe-cc
Q psy8850         254 -EMKEELKRILFLQKRLYNGLMESIEE------IYINGDMNNRIPHNL-------NISFNFIEGESL-LMAIKDIAV-SS  317 (397)
Q Consensus       254 -~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~l~~i~~-~~  317 (397)
                       .-.++.+...+.+..+++.|.+ +++      +.++.++.......+       |-.|.+...... .+.++ +.+ .+
T Consensus       419 ~~G~~l~~~~i~~a~~~R~~l~~-~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~K-lti~tp  496 (714)
T PRK15400        419 NAGKRLINGSIERAIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIK-VTLLTP  496 (714)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHh-CCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCce-EEEEeC
Confidence             4567778888888889999988 766      555532210000000       001111100000 11111 111 11


Q ss_pred             cCccC-----CCC--CChhhHHHhhCCCcccc-CceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         318 GSACT-----SAS--LEPSYVLRALGCNDELA-HSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       318 g~~~~-----~~~--~~~~~~~~~~g~~~~~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      |....     .|.  ..-...|+..|+...+. ...+-+.++...+++++++++++|.++-+.
T Consensus       497 gi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~~  559 (714)
T PRK15400        497 GMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRA  559 (714)
T ss_pred             CCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            21000     000  00123455566655443 356777777778999999999999987554

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.82  E-value=2.8e-17  Score=151.83  Aligned_cols=301  Identities=16%  Similarity=0.128  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHH-HHHHhhCCcEEEEecc-
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-IRKLENDGFRVTYLKP-  118 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~-~~~~~~~g~~v~~v~~-  118 (397)
                      +...++++.+++++|.+  .++.+++||.|++++....+    ++||+|  +...|.....+ +...   |....-+.. 
T Consensus        78 ~s~~~LE~~vAe~lG~e--~aV~v~sGTaAl~ll~~l~v----~pGd~V--p~n~~f~Tt~ahI~~~---Ga~fvDi~~d  146 (460)
T PRK13237         78 RNFYHLEETVQEYYGFK--HVVPTHQGRGAENLLSRIAI----KPGQYV--PGNMYFTTTRYHQELN---GGIFVDIIID  146 (460)
T ss_pred             CcHHHHHHHHHHHHCCC--eEEEeCCHHHHHHHHHHhCC----CCcCEE--CCccchHhhHHHHHhC---CcEEEeeecc
Confidence            35678999999999988  69999999999998655444    788965  55555555444 4433   665444421 


Q ss_pred             ---------CCCCCCCHHHHHHHhcCC----ceEEEEecccCcc-cccc---cHHHHHHHHHhcCcEEEEecccccCccc
Q psy8850         119 ---------KNNGLITLSQLEEKICSD----TILVSVMLVNNEI-GVIQ---PILEIGELCRSKGVIFHCDAAQAVGKID  181 (397)
Q Consensus       119 ---------~~~~~~d~~~l~~~i~~~----~~~v~~~~~~~~t-G~~~---~l~~i~~l~~~~gi~livD~a~~~~~~~  181 (397)
                               ..+|.+|++.++++|+++    +++++++.++|.. |...   +++++.++|++||++||+|+++.++...
T Consensus       147 ~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~  226 (460)
T PRK13237        147 EAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAY  226 (460)
T ss_pred             cccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChh
Confidence                     236889999999999863    4467777777776 5665   4789999999999999999999877321


Q ss_pred             --------c---ccC------cccccEEEecccc-ccCCCCceEEEEecC-CCCccccc--cccCCccccccCCCCchhH
Q psy8850         182 --------I---NIQ------NYKVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQ--IHGGGHEYGLRSGTLATHQ  240 (397)
Q Consensus       182 --------~---~~~------~~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~  240 (397)
                              .   ++.      ....|.+++|++| ..++.| |++..+++ +.++++..  .+.|.    ...|.....-
T Consensus       227 fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~eG~----~tygg~~grd  301 (460)
T PRK13237        227 FIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVYEGM----PSYGGMAGRD  301 (460)
T ss_pred             hhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhccccCCC----cCCCChhhhH
Confidence                    1   110      1157999999999 666765 88888765 33333332  11111    1233444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEe----cCC-----ChHHHHHHhC
Q psy8850         241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF----NFI-----EGESLLMAIK  311 (397)
Q Consensus       241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~l~  311 (397)
                      +.++...+....+  ..+.++.....++|.+.|.+  .|+.+..+.+   ++.+.+..    +.+     +...+...|-
T Consensus       302 ~~alAvgl~E~~~--~~y~~~ri~~~~~l~~~L~~--~Gvpv~~p~g---gH~v~vda~~~lph~~~~~~p~~al~~~ly  374 (460)
T PRK13237        302 MEAMAIGIEESVQ--YEYIEHRVGQVRYLGEKLLA--AGVPIVEPVG---GHAVFLDARRFLPHLPQDQFPAQALAAELY  374 (460)
T ss_pred             HHHHHhHHHhhch--HHHHHHHHHHHHHHHHHHHH--CCCceecCCC---ceEEEEEhHHhCCCCCcccChHHHHHHHHH
Confidence            6667666665544  25666667778999999988  7888887654   45555543    222     2344544443


Q ss_pred             ---CcEe-cccCccCCCCCChhhHHHhhCCCc----ccc--CceEEEeeC-CCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy8850         312 ---DIAV-SSGSACTSASLEPSYVLRALGCND----ELA--HSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKLRELS  377 (397)
Q Consensus       312 ---~i~~-~~g~~~~~~~~~~~~~~~~~g~~~----~~~--~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~~~~~  377 (397)
                         ||.- .-|+...             |.++    ...  -..+|+.++ -.-|.+.+|..+++|..+.++-..+.
T Consensus       375 ~~~GiR~~e~g~~~~-------------~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~~~  438 (460)
T PRK13237        375 IESGVRSMERGIVSA-------------GRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHREDIR  438 (460)
T ss_pred             HHhCcCeEeecceec-------------ccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhhcC
Confidence               4322 2232211             1111    011  267999987 33579999999999998887665544

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.81  E-value=1.7e-17  Score=157.27  Aligned_cols=311  Identities=14%  Similarity=0.127  Sum_probs=192.6

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +..+|.|.+++.+++....   .   +..   ..+...++.+.|.+.+. ..+.++|++||++|++.+++... .+++ +
T Consensus        68 Gh~~p~v~~ai~~q~~~~~---~---~~~---~~~~~~~la~~l~~~~p-~~~~v~f~~sGseA~e~AlklAr-~~tg-r  135 (428)
T PRK12389         68 GHAHPHITKAITEAAENGV---L---YGT---PTELEIEFAKMLKEAIP-SLEKVRFVNSGTEAVMTTIRVAR-AYTG-R  135 (428)
T ss_pred             CCCCHHHHHHHHHHHHhCC---c---cCC---CCHHHHHHHHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHHH-HhhC-C
Confidence            4568999999999987621   1   111   12345667777777765 24579999999999999999644 4433 4


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhC-----------Cc------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEeccc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLEND-----------GF------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVN  146 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~-----------g~------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~  146 (397)
                      .+|+.....|++...........           |+      .+..+|.     .|++.+++.+.   +++.+|+++.+.
T Consensus       136 ~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~vaavi~EPv~  210 (428)
T PRK12389        136 TKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF-----NDIEALKEALDKWGDEVAAVLVEPIV  210 (428)
T ss_pred             CEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC-----CCHHHHHHHHHhcCCcEEEEEEeCCC
Confidence            66776666666654333322110           10      1112222     27889988885   467899999999


Q ss_pred             Cccccccc----HHHHHHHHHhcCcEEEEecccccCccc----cccCcccccEEEecccc-ccCCCCceEEEEecCCCCc
Q psy8850         147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR  217 (397)
Q Consensus       147 ~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~  217 (397)
                      +..|.+.|    +++|.++|++||+++|+|++++.....    .......+|+++++  | +.|+..+|.++++++..+.
T Consensus       211 g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt~g--K~lggG~Pi~av~~~~~i~~~  288 (428)
T PRK12389        211 GNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTALG--KIIGGGLPIGAYGGRKDIMEQ  288 (428)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeeeec--hhhcCCCceeEEeEHHHHHhh
Confidence            99999888    899999999999999999998743211    11123368988776  9 6554557888888766555


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcE-EEeCCCCCCCCce
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEI-YINGDMNNRIPHN  293 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~-~~~~~~~~~~~~~  293 (397)
                      +.+.  + ......+.+ .|...+++..++|+.+.+  ..+.+++.++.++|++.|++.   .+.. .+...     .++
T Consensus       289 ~~~~--~-~~~~~~T~~-gnpl~~Aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~-----~g~  357 (428)
T PRK12389        289 VAPL--G-PAYQAGTMA-GNPASMAAGIACLEVLQQ--EGVYEKLDRLGAMLEEGILEAAEKHGITITINRL-----KGA  357 (428)
T ss_pred             hccC--C-CcccccCCc-cCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEec-----CcE
Confidence            4321  0 000111222 344556666688888765  356777888888888888761   1211 11111     224


Q ss_pred             EEEEecCCC--------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHH
Q psy8850         294 LNISFNFIE--------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK  357 (397)
Q Consensus       294 ~~~~~~~~~--------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~  357 (397)
                      +.+.+....              ...+...+.  |+.+.+..                       .+.+  .++..++++
T Consensus       358 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~~--~~~l~~t~e  412 (428)
T PRK12389        358 LTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSK-----------------------YEAW--FLTTAHTEE  412 (428)
T ss_pred             EEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCC-----------------------CCCe--eecCCCCHH
Confidence            444443111              123333333  66665421                       0223  345567999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8850         358 EIDFTIKLLKMKVKK  372 (397)
Q Consensus       358 ~i~~~~~~l~~~~~~  372 (397)
                      ||+++++++.+++++
T Consensus       413 ~id~~~~~l~~~l~~  427 (428)
T PRK12389        413 DIEETLEAVDRAFAQ  427 (428)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998864

>KOG3846|consensus

Probab=99.81  E-value=3.3e-18  Score=145.11  Aligned_cols=345  Identities=17%  Similarity=0.167  Sum_probs=247.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ..|.+.+|+.+.+.+.+.+..+. .-....|..|-..+....+ +-..++.+.|+..++|.+.++-|.-++.++-++...
T Consensus        73 GNSLGLmPK~t~~~~~~eLDkWa-k~av~gH~~GkvPW~~~De~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKP  151 (465)
T KOG3846|consen   73 GNSLGLMPKSTRNSINAELDKWA-KCAVEGHFKGKVPWVSIDEPILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKP  151 (465)
T ss_pred             ccccccCchhhHhHHHHHHHHHH-hhhhhcccccccceeecchhhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCC
Confidence            45677899999999988887633 2221133333333333333 677889999998888999999998888888777632


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhC-CcEEE----Eecc-CCCCCCCHHHHHHHhcC---CceEEEEecccCccccc
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVT----YLKP-KNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVI  152 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g~~v~----~v~~-~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~  152 (397)
                      . ..+-+|+.....|||-+.+++...+. |.++.    .+.. +.+..+..+++-+-|+.   ..++|+++.+++.||..
T Consensus       152 T-ekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~  230 (465)
T KOG3846|consen  152 T-EKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQY  230 (465)
T ss_pred             c-chhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccc
Confidence            2 33478999999999999999887654 65532    2222 22345777888877764   47899999999999999


Q ss_pred             ccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-c-cCCCCceEEEEecCCCCccccccccCCc---
Q psy8850         153 QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-I-YGPKGIGALYIRRNPRTRIEAQIHGGGH---  227 (397)
Q Consensus       153 ~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~---  227 (397)
                      .++..|...-+..|++|-.|-+|++|.+++.+..|++|+-|...+| + .|+.|+|-+++..+......+.+.||..   
T Consensus       231 Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~  310 (465)
T KOG3846|consen  231 FDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDP  310 (465)
T ss_pred             cchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCc
Confidence            9999999777778999999999999999999999999999999999 4 5566777777766655566665555532   


Q ss_pred             ---------------cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCc-----------E
Q psy8850         228 ---------------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEE-----------I  280 (397)
Q Consensus       228 ---------------~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~-----------~  280 (397)
                                     ..+|+.+.|+.....++...++...+ .+.+++.+-.-+..+|...++. ..+           +
T Consensus       311 s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~-~~g~~~~~rt~Kl~~  389 (465)
T KOG3846|consen  311 SKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKA-SKGYKHPLRTEKLFF  389 (465)
T ss_pred             chhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHH-hcccCchhhhcceeE
Confidence                           24677888889999999999998765 3677777777777777666554 222           3


Q ss_pred             EEeCCCC-CCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCH
Q psy8850         281 YINGDMN-NRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTE  356 (397)
Q Consensus       281 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~  356 (397)
                      .+..+.. ...+..+.+.|.. +...+...|.  |+...                       ...++.||+.+ +.|++-
T Consensus       390 ~IiTP~~~~erGcQLsl~Fss-p~~~vfqeL~krGv~~D-----------------------kR~PNvIRvAPvpLYN~f  445 (465)
T KOG3846|consen  390 TIITPTSTDERGCQLSLYFSS-PTPKVFQELHKRGVIGD-----------------------KRRPNVIRVAPVPLYNTF  445 (465)
T ss_pred             EEeCCcccccccceEEEEeCC-CchHHHHHHHHcCeecc-----------------------ccCCCceEeecchhhccH
Confidence            3333321 1223445556653 3355665554  44332                       23458999975 578999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8850         357 KEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       357 ~~i~~~~~~l~~~~~~~~  374 (397)
                      .||-+++++|.+++..+.
T Consensus       446 ~Dvy~f~n~L~e~~d~~e  463 (465)
T KOG3846|consen  446 SDVYIFVNALNEAMDKLE  463 (465)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999987653

>PRK06917 hypothetical protein; Provisional

Probab=99.81  E-value=3.6e-17  Score=155.37  Aligned_cols=338  Identities=12%  Similarity=0.075  Sum_probs=200.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      .+..+|.|.+++++++....   .  .+... ...+...++.+.|++++....+.++|++||++|++.+++.....+.  
T Consensus        45 lGh~hp~v~~Ai~~ql~~~~---~--~~~~~-~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~r  118 (447)
T PRK06917         45 IGHGVKEIADAIKEQAEEVS---F--VYRSQ-FTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQER  118 (447)
T ss_pred             CCCCCHHHHHHHHHHHhhCc---C--ccccc-cCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhc
Confidence            35678999999999998621   1  00000 1124456788888888764445799999999999999996643221  


Q ss_pred             --cCCCEEEEcCCCChhhHHHHHHHhh-CCc---------EEEEeccCCCCC------------CCHHHHHHHhc----C
Q psy8850          84 --KRGKHIITVQTEHKSVLDSIRKLEN-DGF---------RVTYLKPKNNGL------------ITLSQLEEKIC----S  135 (397)
Q Consensus        84 --~~g~~vl~~~~~~~s~~~~~~~~~~-~g~---------~v~~v~~~~~~~------------~d~~~l~~~i~----~  135 (397)
                        ..+.+|+.....|++.......+.. .+.         .+..+|......            -+++.+++.+.    +
T Consensus       119 g~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~  198 (447)
T PRK06917        119 GIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAE  198 (447)
T ss_pred             CCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCC
Confidence              1236777777666665543332211 000         112222111000            12456677764    3


Q ss_pred             CceEEEEecccCc-cccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCCC-
Q psy8850         136 DTILVSVMLVNNE-IGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGPK-  203 (397)
Q Consensus       136 ~~~~v~~~~~~~~-tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~~-  203 (397)
                      ++.+|+++.+... .|.+.|    ++.+.++|++||+++|+|+++. +|..-    .......+|+++++  | +.|+. 
T Consensus       199 ~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~g--K~l~~G~~  276 (447)
T PRK06917        199 HIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLG--KGLGAGYT  276 (447)
T ss_pred             ceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEee--ehhccCCc
Confidence            6889999988764 456655    7899999999999999999986 22211    12223368998887  9 65442 


Q ss_pred             CceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cEEE
Q psy8850         204 GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE-EIYI  282 (397)
Q Consensus       204 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~  282 (397)
                      .+|++.++++....+.+..  +......+.+ .|...+++..++++.+.+  ..+.+++.++.++|++.|++ +. ...+
T Consensus       277 Pi~a~~~~~~i~~~~~~~~--~~~~~~~T~~-gnpl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~-l~~~~~~  350 (447)
T PRK06917        277 PIAATVVSDRVMEPILRGS--RSIMSGHTLS-ANPLSAATALAVLEYMEK--HNLPEKAAEKGEYLIKGLQK-VQQQSTI  350 (447)
T ss_pred             ceEEEEEcHHHHHHHhccC--cccccccCCC-CCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence            5788888876544432210  0000111222 344556666678887765  35667778888888887776 32 1211


Q ss_pred             eCCCCCCCCceEEEEecCC--------C----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEE
Q psy8850         283 NGDMNNRIPHNLNISFNFI--------E----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF  348 (397)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  348 (397)
                      +.. -...+.++.+.|...        .    ...+...+.  |+.+.+...-.               . ...++.+|+
T Consensus       351 i~~-vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~---------------~-g~~~~~i~l  413 (447)
T PRK06917        351 IGD-VRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQ---------------D-GKEGDAVII  413 (447)
T ss_pred             EEE-EeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEeccccc---------------C-CCCCCEEEE
Confidence            211 111244555665311        0    123333333  77765431100               0 001378999


Q ss_pred             eeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         349 TIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       349 ~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +++..+|++|||+++++|.++++++.
T Consensus       414 ~Ppl~it~~eid~~~~~l~~~l~~~~  439 (447)
T PRK06917        414 APPMTITYSELDELLSIFAKSVEEMM  439 (447)
T ss_pred             ECCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998873

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.81  E-value=5.8e-17  Score=157.70  Aligned_cols=313  Identities=16%  Similarity=0.086  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-  120 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-  120 (397)
                      .+.+.++.+|+.||++ ...++++|+|.++..++.+++    ++||+|++..++|.|...++.+.   |+++++++... 
T Consensus       196 ~i~eAe~~aA~~fgAd-~tyfvvNGTS~~n~av~~a~~----~~Gd~VLvdRN~HKSv~~aLils---ga~PVYl~P~~n  267 (713)
T PRK15399        196 PHLEAEEYIARTFGAE-QSYIVTNGTSTSNKIVGMYAA----PAGSTLLIDRNCHKSLAHLLMMS---DVVPIWLKPTRN  267 (713)
T ss_pred             HHHHHHHHHHHHhCCC-cEEEEeCChHHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHHHc---CCeeEEeccccc
Confidence            5778899999999998 368889999999999999988    89999999999999999988887   99999987652 


Q ss_pred             -C---CCCCH-----HHHHHHhcCC-----ceEEEEecccCcccccccHHHHHHHHHhcCcEE-EEecccccCc--cc--
Q psy8850         121 -N---GLITL-----SQLEEKICSD-----TILVSVMLVNNEIGVIQPILEIGELCRSKGVIF-HCDAAQAVGK--ID--  181 (397)
Q Consensus       121 -~---~~~d~-----~~l~~~i~~~-----~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~l-ivD~a~~~~~--~~--  181 (397)
                       .   +.++.     +.+++++.+.     +++++++++ |.-|.+++++.|+++|   |+.+ ++|+||+...  .+  
T Consensus       268 ~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~  343 (713)
T PRK15399        268 ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIY  343 (713)
T ss_pred             ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCccc
Confidence             2   34566     8888888643     357888877 5569999999999999   7776 6999998322  11  


Q ss_pred             cccCcc----cccEE---Eecccc-ccCCCCceEEEEecCCC-CccccccccCCccccccCCCCchhHHHHHHHHHHHHH
Q psy8850         182 INIQNY----KVDLM---SFSAHK-IYGPKGIGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR  252 (397)
Q Consensus       182 ~~~~~~----~~d~~---~~s~~K-~~g~~g~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~  252 (397)
                      .+...+    ++|.+   +.|.|| +.+....+++.++.... +++...+      .-+.+++|+++.++++..+..++.
T Consensus       344 ~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~------~m~~STSPsY~LmASLD~a~~~m~  417 (713)
T PRK15399        344 QGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAF------MMHTSTSPSYPIVASVETAAAMLR  417 (713)
T ss_pred             CCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHH------HHHcCCCcHHHHHHHHHHHHHHHH
Confidence            111111    45766   999999 77777789998865321 1122211      113456788888888888888876


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHhhhcCc------EEEeCCCCCCCCceE-------EEEecCCChHH-HHHHhCCcEe-c
Q psy8850         253 I-EMKEELKRILFLQKRLYNGLMESIEE------IYINGDMNNRIPHNL-------NISFNFIEGES-LLMAIKDIAV-S  316 (397)
Q Consensus       253 ~-~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~l~~i~~-~  316 (397)
                      . .-..+.+...+.+..+++.|.+ +.+      +.++.++......++       +-.|.+..... ..+.++ +.+ .
T Consensus       418 ~~~G~~l~~~~i~~a~~fR~~l~~-~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~K-ltI~t  495 (713)
T PRK15399        418 GNPGKRLINRSVERALHFRKEVQR-LREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVK-VTILT  495 (713)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHh-ccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCce-EEEEe
Confidence            3 4566777888888888888877 554      344432100000000       00011100000 011111 111 1


Q ss_pred             ccCc-----cCCCC--CChhhHHHhhCCCcccc-CceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         317 SGSA-----CTSAS--LEPSYVLRALGCNDELA-HSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       317 ~g~~-----~~~~~--~~~~~~~~~~g~~~~~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +|..     -..|.  ..-...|+..|+..... ...+-+-++...+++++++++++|.++-+.+.
T Consensus       496 ~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~~~d  561 (713)
T PRK15399        496 PGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRAYD  561 (713)
T ss_pred             cCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhh
Confidence            1110     00000  00123455556555443 35677777777899999999999998855443

>PRK06148 hypothetical protein; Provisional

Probab=99.81  E-value=1.8e-17  Score=171.23  Aligned_cols=327  Identities=15%  Similarity=0.150  Sum_probs=202.7

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|.|.+++.+++....  ... .     ...+...++.+.|++.+..+.+.++|++|||+|++.+++.. +.++++
T Consensus       636 lGH~hp~v~~Ai~~q~~~l~--~~~-~-----~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklA-r~~tGr  706 (1013)
T PRK06148        636 VGHAHPRVVAAAARQAARLN--TNT-R-----YLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLA-RAHTGQ  706 (1013)
T ss_pred             cCCCCHHHHHHHHHHHhhcC--CcC-C-----cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHH-HHhcCC
Confidence            45678999999999997631  111 1     12345677888888887544457999999999999999954 445444


Q ss_pred             CCEEEEcCCCChhhH-HHHHHHh----h-CC----cEEEEeccCC--CCCC---C-------HHHHHHHhc------CCc
Q psy8850          86 GKHIITVQTEHKSVL-DSIRKLE----N-DG----FRVTYLKPKN--NGLI---T-------LSQLEEKIC------SDT  137 (397)
Q Consensus        86 g~~vl~~~~~~~s~~-~~~~~~~----~-~g----~~v~~v~~~~--~~~~---d-------~~~l~~~i~------~~~  137 (397)
                       .+|++...+|++.. .+.....    . .+    ..+..++...  ....   +       .+++++.+.      +++
T Consensus       707 -~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~i  785 (1013)
T PRK06148        707 -RDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGP  785 (1013)
T ss_pred             -CeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCce
Confidence             45665555555544 3332110    0 01    1122222111  0001   1       134555543      458


Q ss_pred             eEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc-----cccCcccccEEEecccc-ccCCCCce
Q psy8850         138 ILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID-----INIQNYKVDLMSFSAHK-IYGPKGIG  206 (397)
Q Consensus       138 ~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~-----~~~~~~~~d~~~~s~~K-~~g~~g~g  206 (397)
                      .+|+++.+....|.+.|    ++++.++|++||+++|+|+++. +|..-     .......+|+++++  | +.|+..+|
T Consensus       786 AAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~g--K~lggG~Plg  863 (1013)
T PRK06148        786 AFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMG--KPIGNGHPMG  863 (1013)
T ss_pred             EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeec--ccccCCcceE
Confidence            89999999988898877    7999999999999999999985 43321     22233468998887  9 66656689


Q ss_pred             EEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC
Q psy8850         207 ALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM  286 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  286 (397)
                      .++++++..+.+.+-.     ....+.+. |...+++..++|+.+.+  +++.++..++.++|++.|++......++..-
T Consensus       864 av~~~~ei~~~~~~g~-----~~~~Tf~g-npla~aaa~a~L~~i~~--e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~V  935 (1013)
T PRK06148        864 AVVTTREIADSFDNGM-----EYFNTFGG-NPVSCAIGLAVLDIIED--EDLQRNALEIGNYLLAGLRELQDRFDIIGDV  935 (1013)
T ss_pred             EEEEcHHHHhhccCCC-----ccccCCCC-CHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence            9999877655443211     01123333 44455555578888765  4567778888888888887621111111110


Q ss_pred             CCCCCceEEEEecCC-----C----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850         287 NNRIPHNLNISFNFI-----E----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT  355 (397)
Q Consensus       287 ~~~~~~~~~~~~~~~-----~----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  355 (397)
                       ...+.++-+.+...     .    ...+...+.  ||.+.+..                     ..++.+||.++..+|
T Consensus       936 -rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g---------------------~~~~vlr~~Ppl~it  993 (1013)
T PRK06148        936 -RGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEG---------------------PHDNVLKIRPPLIFS  993 (1013)
T ss_pred             -eeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccC---------------------CCCCEEEEeCCccCC
Confidence             11144555555321     1    123444443  77665321                     013889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy8850         356 EKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~~~~~  374 (397)
                      ++++|+++++|.+++.++.
T Consensus       994 ~~~id~~l~~l~~~l~~~~ 1012 (1013)
T PRK06148        994 RADADHLLEVLDDVLAAAL 1012 (1013)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999997653

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.81  E-value=2.5e-17  Score=156.59  Aligned_cols=312  Identities=14%  Similarity=0.109  Sum_probs=191.0

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +..+|.|.+++.+++....   .   +..   ..+...++.+.|++.+.. .+.+.|++|||+|++.+++.. +.+++ +
T Consensus       114 Gh~~p~v~~av~~ql~~~~---~---~~~---~~~~~~~lAe~l~~~~p~-~~~v~f~~SGsEA~e~AlklA-R~~tg-r  181 (474)
T PLN02482        114 GHADDEVLAALAETMKKGT---S---FGA---PCLLENVLAEMVIDAVPS-VEMVRFVNSGTEACMGVLRLA-RAYTG-R  181 (474)
T ss_pred             CCCCHHHHHHHHHHHhhCC---C---CCC---CCHHHHHHHHHHHHhCCC-CCEEEEeCChHHHHHHHHHHH-HHhcC-C
Confidence            4568999999999997622   1   111   123456677888887753 468999999999999999954 44544 4


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhC-----------Cc------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEeccc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLEND-----------GF------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVN  146 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~-----------g~------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~  146 (397)
                      ++|+....+|++....+......           |.      .+..+|.+     |++++++.+.   +++.+|+++.+.
T Consensus       182 ~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~~~~~iAavI~Epv~  256 (474)
T PLN02482        182 EKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYN-----DLEAVKKLFEANKGEIAAVILEPVV  256 (474)
T ss_pred             CEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCC-----ChHHHHHHHHhCCCceEEEEECCCC
Confidence            67777777777654222111000           11      11222222     7889998885   357899999999


Q ss_pred             Cccccccc----HHHHHHHHHhcCcEEEEecccccCccc----cccCcccccEEEecccc-ccCCCCceEEEEecCCCCc
Q psy8850         147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR  217 (397)
Q Consensus       147 ~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~  217 (397)
                      ...|.+.|    ++.+.++|++||+++|+|+++......    .......+|+++++  | +.|+..+|.+.++++..+.
T Consensus       257 g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t~g--K~lggG~Pigav~g~~ei~~~  334 (474)
T PLN02482        257 GNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTLG--KVIGGGLPVGAYGGRREIMEM  334 (474)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEEec--chhhCCCceEEEEEcHHHHHh
Confidence            88898877    578999999999999999998521111    11122358887776  9 6554457888888766555


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--EEEe-CCCCCCCCceE
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE--IYIN-GDMNNRIPHNL  294 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~-~~~~~~~~~~~  294 (397)
                      +.+.   +......+.+ .+...+++..++|+.+.+  +...+++.++.++|++.|++....  +.+. ...    ..++
T Consensus       335 ~~~~---~~~~~~~T~~-gnpl~~aAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v----~g~~  404 (474)
T PLN02482        335 VAPA---GPMYQAGTLS-GNPLAMTAGIHTLKRLQQ--PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYI----SGMF  404 (474)
T ss_pred             hccC---CCcccccCcc-hhHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEccc----ceEE
Confidence            4321   1000111111 244455556678887764  457778888888888888762111  2222 111    2344


Q ss_pred             EEEecCC-----------Ch---HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         295 NISFNFI-----------EG---ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       295 ~~~~~~~-----------~~---~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      .+.|...           +.   ..+...+.  |+.+.+...  +                    .  + .++..+|++|
T Consensus       405 gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~--~--------------------~--~-~psl~ht~~d  459 (474)
T PLN02482        405 GFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQF--E--------------------A--G-FTSLAHTEED  459 (474)
T ss_pred             EEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCC--C--------------------C--C-cCCCCCCHHH
Confidence            4444311           11   12333332  666654210  0                    1  1 1556689999


Q ss_pred             HHHHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKVKK  372 (397)
Q Consensus       359 i~~~~~~l~~~~~~  372 (397)
                      ||++++++.+++++
T Consensus       460 Id~~l~al~~~l~~  473 (474)
T PLN02482        460 IDFTIAAAERVLAR  473 (474)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999865

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.80  E-value=8e-17  Score=160.73  Aligned_cols=288  Identities=13%  Similarity=0.113  Sum_probs=211.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEecc
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP  118 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~  118 (397)
                      -+.+.+++..++++.|.+..+..+..++|.+.++++++..... +++++|++++..||.+...++.. ...|++++.++ 
T Consensus       108 Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~-~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~-  185 (939)
T TIGR00461       108 LEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSK-KKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD-  185 (939)
T ss_pred             HHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhc-CCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc-
Confidence            3677789999999999998889999999999888877653211 33589999999999999888844 34499988874 


Q ss_pred             CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc
Q psy8850         119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK  198 (397)
Q Consensus       119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K  198 (397)
                             +++|++.+  ++.++++.+| |-.|.+.++++|.+++|++|.+++++.-...........++++|+++.+.++
T Consensus       186 -------~~~l~~~~--~~~~v~~q~P-n~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~  255 (939)
T TIGR00461       186 -------CSDIKKAV--DVFGCLLQYP-ATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQR  255 (939)
T ss_pred             -------HHHHhhcC--CEEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCc
Confidence                   44566655  5677777766 4569999999999999999999999766655555556677799999988888


Q ss_pred             c-----cCCCCceEEEEecCCCCccccccccC-----------------CccccccCCCCchhHH---HHHHHH--HHHH
Q psy8850         199 I-----YGPKGIGALYIRRNPRTRIEAQIHGG-----------------GHEYGLRSGTLATHQI---VGMGEA--FRLA  251 (397)
Q Consensus       199 ~-----~g~~g~g~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~---~~l~~a--l~~~  251 (397)
                      +     +|+++.|++.++++....+...+.|.                 .+..+...+++|....   .++.++  +.++
T Consensus       256 fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~  335 (939)
T TIGR00461       256 FGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYH  335 (939)
T ss_pred             cCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHH
Confidence            5     33445899999987666654433331                 1123444567665433   333334  2332


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCCh
Q psy8850         252 -RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEP  328 (397)
Q Consensus       252 -~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~  328 (397)
                       .+|++++.++...++.++.+.|++  .|+.+..+   .....+.+.++..+..++.+.+.  ||.+...          
T Consensus       336 G~~GL~~iA~~~~~~a~~l~~~L~~--~G~~~~~~---~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~~----------  400 (939)
T TIGR00461       336 GPKGLKNIARRIHSLTSILANGLEN--DPHELINK---TWFDTLTVKVGNGISSELLKAAEEFNINLRAV----------  400 (939)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHh--CCCcccCC---CccceEEEEeCCCCHHHHHHHHHHCCCeeeec----------
Confidence             468999999999999999999998  78877754   22345566664345677777775  7765431          


Q ss_pred             hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         329 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       329 ~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                                   ..+.+++|+..++|.+||+.+++.+.
T Consensus       401 -------------~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       401 -------------DTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             -------------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence                         12689999999999999999999995

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.80  E-value=5e-17  Score=153.76  Aligned_cols=328  Identities=10%  Similarity=0.054  Sum_probs=199.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc--
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK--   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~--   84 (397)
                      +..+|++.+++++++.... .... .    ....+...++.+.++++++..-+.+.|+++|++|++.+++....++..  
T Consensus        60 Gh~~p~v~~ai~~~~~~~~-~~~~-~----~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~  133 (427)
T TIGR00508        60 GYNHPRLNAAAQKQIDKMS-HVMF-G----GFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKG  133 (427)
T ss_pred             CCCCHHHHHHHHHHHHhcC-Cccc-c----ccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhC
Confidence            4678999999999987622 1111 0    011234566777888887644468999999999999999965543311  


Q ss_pred             --CCCEEEEcCCCChhhHHHHHHHhhC---------C--cEEEEeccCCC-C-----CCCHHHHHHHhc---CCceEEEE
Q psy8850          85 --RGKHIITVQTEHKSVLDSIRKLEND---------G--FRVTYLKPKNN-G-----LITLSQLEEKIC---SDTILVSV  142 (397)
Q Consensus        85 --~g~~vl~~~~~~~s~~~~~~~~~~~---------g--~~v~~v~~~~~-~-----~~d~~~l~~~i~---~~~~~v~~  142 (397)
                        .+.+|+....+|++.......+...         +  ..+..++.... .     .-|++++++++.   ++..+|++
T Consensus       134 ~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaaviv  213 (427)
T TIGR00508       134 EKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVIL  213 (427)
T ss_pred             CCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEE
Confidence              2356777777666654333222110         0  01112222111 0     114567777774   35778899


Q ss_pred             ecc-cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEE
Q psy8850         143 MLV-NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYI  210 (397)
Q Consensus       143 ~~~-~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~  210 (397)
                      +.+ ++..|.+.+    +++|.++|++||+++|+|+++. +|..    ..+...+.+|++++  +| +.|+ ..++.++.
T Consensus       214 EPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~--gK~l~gG~~p~~a~~~  291 (427)
T TIGR00508       214 EPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILCV--GKALTGGYMTLSATVT  291 (427)
T ss_pred             echhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEEe--chhhhcCcccceEEEE
Confidence            986 677676544    7899999999999999999984 2221    11222346888886  59 5443 24677888


Q ss_pred             ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q psy8850         211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI  290 (397)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  290 (397)
                      +++..+.+.....+. ....... ..+...+++..++++.+.+  ..+.++..++.++|++.|++ +........ ....
T Consensus       292 ~~~~~~~~~~~~~~~-~~~~~T~-~g~p~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~-l~~~~~i~~-vrg~  365 (427)
T TIGR00508       292 TDKVAQTISSGEAGC-FMHGPTF-MGNPLACAVAEASLAILLE--GEWQKQVSAIENQLKRELSP-LRKNPVVKD-VRVL  365 (427)
T ss_pred             cHHHHHHHhcCCCCc-cccCCCC-CcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-hhcCCCEEe-Eecc
Confidence            765544443211000 0000111 2345666666688887765  34578888888899988877 532211111 1112


Q ss_pred             CceEEEEecC-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         291 PHNLNISFNF-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       291 ~~~~~~~~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                      +.++.+.+.. .....+...+.  ||.+.+.                        ++.+|++++..++++|||+++++|+
T Consensus       366 G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~------------------------~~~l~~~ppl~~t~~~id~~~~~l~  421 (427)
T TIGR00508       366 GAIGVVEMYKPVNVEELQKKFVEQGVWIRPF------------------------GKLIYVMPPYIITTEQLQKLTAALI  421 (427)
T ss_pred             ccEEEEEECCccCHHHHHHHHHHCCeEEEec------------------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4556666643 23455666654  6666431                        1579999999999999999999999


Q ss_pred             HHHHH
Q psy8850         368 MKVKK  372 (397)
Q Consensus       368 ~~~~~  372 (397)
                      +++++
T Consensus       422 ~~l~~  426 (427)
T TIGR00508       422 EALHE  426 (427)
T ss_pred             HHHhc
Confidence            98854

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.80  E-value=1.3e-16  Score=151.93  Aligned_cols=326  Identities=13%  Similarity=0.077  Sum_probs=194.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-C-c-EEEeCChhHHHHHHHHHhHhhhc
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-R-E-IIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~-~-i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      +..+|+|.+++++++.....     .+. .....+...++.+.|++.++... + . +++++||++|++.+++... .++
T Consensus        73 GH~~p~v~~Ai~~q~~~~~~-----~~~-~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr-~~t  145 (459)
T PRK06931         73 GHNHPDVLQSIQDVLTSGLP-----LHT-LDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAK-TYT  145 (459)
T ss_pred             CCCCHHHHHHHHHHHhhhcc-----ccc-cccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHH-Hhc
Confidence            46789999999999864110     000 01123455677888888775321 1 2 4566899999999999544 443


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHh-hC---------CcEEEEeccCCCCC--C------CHHHH----HHHhc------C
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLE-ND---------GFRVTYLKPKNNGL--I------TLSQL----EEKIC------S  135 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~-~~---------g~~v~~v~~~~~~~--~------d~~~l----~~~i~------~  135 (397)
                      + +++|+....+|++.......+. ..         ...+..+|.+....  .      +.+.+    ++.+.      +
T Consensus       146 g-r~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (459)
T PRK06931        146 G-RSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVR  224 (459)
T ss_pred             C-CCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCC
Confidence            4 4567766666666654433321 10         01233444432110  0      12222    33332      2


Q ss_pred             CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCc
Q psy8850         136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGI  205 (397)
Q Consensus       136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~  205 (397)
                      ++.+|+++.++...|.+.|    ++.+.++|++||+++|+|+++. +|..    ........+|+++++  | +.|+..+
T Consensus       225 ~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~g--K~l~gG~Pi  302 (459)
T PRK06931        225 KPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMS--KAVGGGLPL  302 (459)
T ss_pred             ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEec--ccccCCcce
Confidence            4789999999988888766    7899999999999999999986 3322    112233468999987  9 6555557


Q ss_pred             eEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CcEEEeC
Q psy8850         206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI-EEIYING  284 (397)
Q Consensus       206 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~  284 (397)
                      |++..+++. +.+.+..      ...+.+. |...+++..++|+.+.+  ..+.++..++.++|++.|++ + ....++.
T Consensus       303 ~av~~~~~~-~~~~~~~------~~~T~~g-npla~aaala~L~~l~~--~~l~~~~~~~G~~l~~~L~~-l~~~~~~i~  371 (459)
T PRK06931        303 AVLGIKKEF-DAWQPGG------HTGTFRG-NQLAMATGLTTLKILKE--ENLAQNAAERGEWLKAQLAE-LQKRYPCIG  371 (459)
T ss_pred             eeeeeHHHH-hhccCCC------CCCCCCC-CHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-HHHhCCCeE
Confidence            888777542 3332211      1122233 34445555578887765  34667777777777777766 3 1111121


Q ss_pred             CCCCCCCceEEEEecCCC---------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         285 DMNNRIPHNLNISFNFIE---------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      . -...+.++.+.+....               ...+...+.  |+.+.+..                     ..++.+|
T Consensus       372 ~-vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~---------------------~~~~~l~  429 (459)
T PRK06931        372 N-VRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGG---------------------RNGNVVR  429 (459)
T ss_pred             e-EecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecC---------------------CCCCEEE
Confidence            1 1112445555553210               112333332  66664321                     0137899


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +.++..++++|+|+++++|.+++.++-+
T Consensus       430 ~~Ppl~it~~eid~~~~~l~~~l~~~~~  457 (459)
T PRK06931        430 LLPPLLITQAECEEFIDRFEQALLAAVK  457 (459)
T ss_pred             EECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999977543

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.80  E-value=7.2e-17  Score=153.11  Aligned_cols=313  Identities=18%  Similarity=0.172  Sum_probs=192.1

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +..+|.+.+++.+++....   ..  +    ...+...++.+.|++++. ..+.+++++||++|++.+++.....  ..+
T Consensus        65 Gh~~p~i~~a~~~~~~~~~---~~--~----~~~~~~~~la~~L~~~~~-~~~~v~~~~sGseA~e~Aik~a~~~--~g~  132 (426)
T PRK00062         65 GHAHPEVVEAVIEAAEKGL---SF--G----APTELEVELAELVIELVP-SIEMVRMVNSGTEATMSAIRLARGY--TGR  132 (426)
T ss_pred             CCCCHHHHHHHHHHHHhCC---cC--C----CCCHHHHHHHHHHHHhCC-CCCEEEEecCHHHHHHHHHHHHHHH--hCC
Confidence            4678999999999997621   11  1    113455678888888764 2357999999999999999975532  235


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhC-----------CcE------EEEeccCCCCCCCHHHHHHHhc---CCceEEEEeccc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLEND-----------GFR------VTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVN  146 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~-----------g~~------v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~  146 (397)
                      ++|+..+++|++...........           +..      ...++     ..|++++++.+.   +++++|+++...
T Consensus       133 ~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~aaiivEpv~  207 (426)
T PRK00062        133 DKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP-----YNDLEAVEELFEEYGDEIAAVIVEPVA  207 (426)
T ss_pred             CeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC-----CCCHHHHHHHHHhCCCcEEEEEEeCCc
Confidence            78888888888876433322100           110      11111     127889998885   367899999888


Q ss_pred             Cccccccc----HHHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCc
Q psy8850         147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR  217 (397)
Q Consensus       147 ~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~  217 (397)
                      +.+|.+.|    +++|.++|++||+++|+|++|.....    ..+.....+|++  +++| +.++..+|+++++++..+.
T Consensus       208 ~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi~--~~gK~l~~G~p~ga~~~~~~i~~~  285 (426)
T PRK00062        208 GNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDLT--TLGKIIGGGLPVGAFGGRREIMEQ  285 (426)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcchH--hhhhHhhCCCcceeeeEHHHHHHh
Confidence            88999988    89999999999999999999972211    111112246765  4559 5443336888888765555


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceE
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNL  294 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~  294 (397)
                      +....   .. ..+.....+...+++..++++.+.+.  ++.++..++.+++++.|++.   .+ +.....   ..+.++
T Consensus       286 ~~~~~---~~-~~~~T~~~~p~~~aaa~a~L~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vr---g~G~~~  355 (426)
T PRK00062        286 LAPLG---PV-YQAGTLSGNPLAMAAGLATLKLLKEP--GFYEELEALTKRLAEGLKEAAKKAG-IPLTVN---RVGSMF  355 (426)
T ss_pred             hccCC---Cc-eecccCcCCHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHcC-CceEEE---EecceE
Confidence            43210   00 11111134455566666888877653  45566666666666666541   22 211111   114455


Q ss_pred             EEEecCC-----------C---hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         295 NISFNFI-----------E---GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       295 ~~~~~~~-----------~---~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      .+.+...           +   ...+...+.  |+.+.+..                       .+.++++  ..++++|
T Consensus       356 ~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~-----------------------~~~~~~~--~~~t~~e  410 (426)
T PRK00062        356 GLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQ-----------------------FEAGFVS--AAHTDED  410 (426)
T ss_pred             EEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCC-----------------------cCceeee--ccCCHHH
Confidence            5555321           0   124444443  66664421                       1345665  4579999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKVKKL  373 (397)
Q Consensus       359 i~~~~~~l~~~~~~~  373 (397)
                      +++++++|.++++++
T Consensus       411 i~~~~~~l~~~l~~~  425 (426)
T PRK00062        411 IEKTLEAARKAFAAL  425 (426)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998754

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.79  E-value=1.2e-16  Score=150.82  Aligned_cols=321  Identities=13%  Similarity=0.099  Sum_probs=190.9

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +..+|.|.+++.+++....      .+.   ...+...++.+.|.++++...+.+.|++||++|++.+++... .+++ +
T Consensus        68 Gh~~p~v~~ai~~q~~~~~------~~~---~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr-~~tg-r  136 (433)
T PRK00615         68 GHSHPKICDAIQQGAERGT------SYG---LTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLAR-GITG-R  136 (433)
T ss_pred             CCCCHHHHHHHHHHHHhCC------CCC---CCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHH-HhhC-C
Confidence            4678999999999987621      111   112345677888888876444579999999999999999544 4433 4


Q ss_pred             CEEEEcCCCChhhHHH-HHHHhhCCc---EE-EEe--c-cCCC----CCCCHHHHHHHhc---CCceEEEEecccCcccc
Q psy8850          87 KHIITVQTEHKSVLDS-IRKLENDGF---RV-TYL--K-PKNN----GLITLSQLEEKIC---SDTILVSVMLVNNEIGV  151 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~-~~~~~~~g~---~v-~~v--~-~~~~----~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~  151 (397)
                      .+|+....+|++.... +..+...+.   .. ...  + ....    -.-|++++++.+.   +++.+|+++.+....|.
T Consensus       137 ~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~  216 (433)
T PRK00615        137 SIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGV  216 (433)
T ss_pred             CEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCc
Confidence            6777767666664311 111100010   00 000  0 0000    0126888988875   35789999999988898


Q ss_pred             ccc----HHHHHHHHHhcCcEEEEecccc-c--Ccc-ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccc
Q psy8850         152 IQP----ILEIGELCRSKGVIFHCDAAQA-V--GKI-DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI  222 (397)
Q Consensus       152 ~~~----l~~i~~l~~~~gi~livD~a~~-~--~~~-~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~  222 (397)
                      +.|    +++|.++|++||+++|+|+++. +  |.. ........+|+++++  | +.|+..+|+++++++..+.+.+. 
T Consensus       217 ~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PDi~~~g--K~lggG~p~~av~~~~~i~~~~~~~-  293 (433)
T PRK00615        217 VLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPDITVYG--KILGGGLPAAAVVAHKSIMDHLAPE-  293 (433)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCCeEEEc--ccccCCcceeeeeecHHHHhhhcCC-
Confidence            887    4699999999999999999985 2  111 112223368988765  9 55443478988887765555321 


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcEEEeCCCCCCCCceEEEEecC
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISFNF  300 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~  300 (397)
                        +......+. ..+...+++..++++.+.+  ..+.+++.++.++|.+.|++.+  .++.+...   +.+.++.+.|..
T Consensus       294 --~~~~~~~T~-~g~p~~~aa~la~L~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~---r~G~~~~i~~~~  365 (433)
T PRK00615        294 --GTIFQAGTL-SGNPLAMAAGKASINLCRE--QGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLV---RYGSMFSFFFNE  365 (433)
T ss_pred             --CCcccCCCC-cccHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE---eeceEEEEEEeC
Confidence              000011111 2345566666688888765  3456677777777766665521  12221111   124566666643


Q ss_pred             CC----------h----HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHH
Q psy8850         301 IE----------G----ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK  364 (397)
Q Consensus       301 ~~----------~----~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  364 (397)
                      ..          .    ..+...+.  |+.+.+...                       .  ...++..++++|||++++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----------------------~--~~~ls~~ht~~did~~~~  420 (433)
T PRK00615        366 NRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPF-----------------------E--ASFLSSAHSMENLDYAQN  420 (433)
T ss_pred             CCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccc-----------------------c--ccceecCCCHHHHHHHHH
Confidence            21          0    12333332  555543210                       1  113444569999999999


Q ss_pred             HHHHHHHHHH
Q psy8850         365 LLKMKVKKLR  374 (397)
Q Consensus       365 ~l~~~~~~~~  374 (397)
                      ++.++++.+-
T Consensus       421 a~~~~~~~~~  430 (433)
T PRK00615        421 VLIDSLEKVF  430 (433)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.78  E-value=7.9e-17  Score=141.85  Aligned_cols=317  Identities=15%  Similarity=0.136  Sum_probs=201.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCC-----CC--cEEEeCChhHHHHHHHH
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL-IYAD-----PR--EIIWTSGATESNNLAIK   76 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~-----~~--~i~~~~g~t~a~~~~l~   76 (397)
                      +.+|.-+.|.++-+..+..    +..    -.|.......+..+.++++ ||.+     .+  .-+-|.|||.|+.++..
T Consensus        41 Gk~pvl~aV~~Ae~~l~~~----~~~----k~Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~  112 (396)
T COG1448          41 GKTPVLRAVKKAEKRLLEQ----EKT----KNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAAD  112 (396)
T ss_pred             CCcchhHHHHHHHHHhhcc----ccc----cccCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHH
Confidence            4445455666665444433    111    1233344566666666665 4532     11  24567899999999999


Q ss_pred             HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-C-CCCCCCHHHHHHHhcC---CceEEEEecccCcccc
Q psy8850          77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-K-NNGLITLSQLEEKICS---DTILVSVMLVNNEIGV  151 (397)
Q Consensus        77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~-~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~  151 (397)
                      .+.+.  .+...|.+++|.++.+...+...   |+++..+|+ | ++..+|.+.+-+.+.+   +..++.-..+|||||.
T Consensus       113 fl~~~--~~~~~vwis~PtW~NH~~If~~a---Gl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~  187 (396)
T COG1448         113 FLARF--FPDATVWISDPTWPNHKAIFEAA---GLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGI  187 (396)
T ss_pred             HHHHh--CCCceEEeCCCCcHhHHHHHHhc---CCceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCC
Confidence            77654  45577999999999999888888   999999887 3 3456898888877754   5567778889999999


Q ss_pred             ccc---HHHHHHHHHhcCcEEEEecccc-cCccccccCcc---------cccEEEeccccccCCCC--ceEEEEecCCCC
Q psy8850         152 IQP---ILEIGELCRSKGVIFHCDAAQA-VGKIDINIQNY---------KVDLMSFSAHKIYGPKG--IGALYIRRNPRT  216 (397)
Q Consensus       152 ~~~---l~~i~~l~~~~gi~livD~a~~-~~~~~~~~~~~---------~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~  216 (397)
                      -++   +++|.++.+++|.+.++|-||- ++.- ++-+.+         ..-+++.|++|.+|..|  +|.+.+-.+..+
T Consensus       188 D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~  266 (396)
T COG1448         188 DPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAE  266 (396)
T ss_pred             CCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHH
Confidence            777   5678888999999999998864 3332 211111         23688999999666444  455544322212


Q ss_pred             ccccccccCCccccccCCCCchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--EEEeCCCCC
Q psy8850         217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNN  288 (397)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~  288 (397)
                      .......-.....+...+.|+..+.......|+      .+..++..+++++..++..|.+.|++..+.  +..+..+  
T Consensus       267 ~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q--  344 (396)
T COG1448         267 EADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQ--  344 (396)
T ss_pred             HHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhc--
Confidence            111111000011222334555555544433332      334468889999999999999999883222  3333322  


Q ss_pred             CCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         289 RIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                        .+  +|.+.+.+..++..-..  +|.+..+                         +  ||++.. .++..|+++++++
T Consensus       345 --~G--MFsy~Gls~~QV~rLree~~IY~v~s-------------------------G--Ri~vaG-l~~~ni~~va~ai  392 (396)
T COG1448         345 --RG--MFSYTGLSPEQVDRLREEFGIYLVAS-------------------------G--RINVAG-LNTSNIDYVAKAI  392 (396)
T ss_pred             --Cc--eeecCCCCHHHHHHHHHhccEEEecC-------------------------C--eeeecc-CChhhHHHHHHHH
Confidence              23  35556777766543332  6666533                         1  999987 6799999999999


Q ss_pred             HHH
Q psy8850         367 KMK  369 (397)
Q Consensus       367 ~~~  369 (397)
                      .++
T Consensus       393 ~~v  395 (396)
T COG1448         393 AAV  395 (396)
T ss_pred             Hhh
Confidence            875

>KOG2467|consensus

Probab=99.78  E-value=2.6e-16  Score=136.73  Aligned_cols=345  Identities=17%  Similarity=0.214  Sum_probs=227.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHH-HHHHHHHHHhCCCCCc--E-EEeCChhHHHHHHHHHh
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIE-KARNEVAQLIYADPRE--I-IWTSGATESNNLAIKGA   78 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~--i-~~~~g~t~a~~~~l~~l   78 (397)
                      |....+.+|++++-..+...+  +.|.. .|..+....+.++ -+++...+.|+++++.  | +-.-||+-|+..+..++
T Consensus        48 SENFts~aVmeAlGS~ltNKYSEGyPG~-RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtal  126 (477)
T KOG2467|consen   48 SENFTSRAVMEALGSCLTNKYSEGYPGA-RYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTAL  126 (477)
T ss_pred             cccchHHHHHHHHhHHhhcccccCCCcc-cccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhh
Confidence            344567889999999988755  67776 5555555554444 4788889999998873  2 22347778999999999


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEE-------EeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCcc
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT-------YLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEI  149 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~-------~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t  149 (397)
                      +    +|++.|.-.+.-+.++...--......+.-+       .+.+| .+|.||.|.||+.... +|++++.-...+  
T Consensus       127 l----~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~SaY--  200 (477)
T KOG2467|consen  127 L----KPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTSAY--  200 (477)
T ss_pred             c----CCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEeccccc--
Confidence            8    8999987555544444332221111111111       12334 5899999999986554 788887643332  


Q ss_pred             cccccHHHHHHHHHhcCcEEEEecccccCc-----cccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc----c
Q psy8850         150 GVIQPILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI----E  219 (397)
Q Consensus       150 G~~~~l~~i~~l~~~~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~----~  219 (397)
                      -...|.+++.++|.+.|+++++|-+|-.|.     .+-.+.  .+|+++.+.|| +.||+| |.++.++.....-    .
T Consensus       201 ~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFe--y~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~~~k~g~  277 (477)
T KOG2467|consen  201 SRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFE--YCDIVTTTTHKSLRGPRG-AMIFYRKGVKSIKPKQGK  277 (477)
T ss_pred             hhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccc--ccceeeccccccccCCcc-eeEEEeccCCcCCCCCCC
Confidence            356788999999999999999999986443     333333  68999999999 999986 8888775321110    0


Q ss_pred             cccccCC-----ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCce
Q psy8850         220 AQIHGGG-----HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHN  293 (397)
Q Consensus       220 ~~~~~~~-----~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  293 (397)
                      ....+..     ....-..|.|-...+.++..||+.... ++..+.+++..+.+.|.++|.+  .|+.++..-  ...++
T Consensus       278 ~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~--~Gy~lvtgG--TDnHl  353 (477)
T KOG2467|consen  278 EILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALIS--RGYKLVTGG--TDNHL  353 (477)
T ss_pred             cceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH--cCceEecCC--ccceE
Confidence            1011100     001112345666889999999997754 6889999999999999999998  788888642  22456


Q ss_pred             EEEEec--CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC----HHHHHHHHHH
Q psy8850         294 LNISFN--FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT----EKEIDFTIKL  365 (397)
Q Consensus       294 ~~~~~~--~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~----~~~i~~~~~~  365 (397)
                      +.+.++  +.+...+-.-|.  +|.+.....+              |-.....++.||+..+..++    ++|++++.+.
T Consensus       354 vLvDLr~~G~dGarvE~vle~~~I~~NKNtvp--------------GD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~f  419 (477)
T KOG2467|consen  354 VLVDLRPKGVDGARVEKVLELCHIALNKNTVP--------------GDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADF  419 (477)
T ss_pred             EEEeccccCCchHHHHHHHHHhhhhhcCCcCC--------------CCccccCCCceeccchhhcccCccHHHHHHHHHH
Confidence            666654  455554444433  4433322111              12233445889998776655    8999999999


Q ss_pred             HHHHHHHHHhcC
Q psy8850         366 LKMKVKKLRELS  377 (397)
Q Consensus       366 l~~~~~~~~~~~  377 (397)
                      |.++++--.+..
T Consensus       420 i~~av~i~~~~~  431 (477)
T KOG2467|consen  420 IDRAVKIALEIQ  431 (477)
T ss_pred             HHHHHHHHHHHH
Confidence            998876555544

>KOG1357|consensus

Probab=99.77  E-value=2.5e-17  Score=146.89  Aligned_cols=324  Identities=15%  Similarity=0.181  Sum_probs=223.3

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      .+.++..+.+.+++..+-....+.    .+.  -...+...++++..|+++|.+. .++|.-|- ..+.+.+.+++    
T Consensus       151 ~~~g~ca~~~~~~~~kygl~~css----~~e--~G~~~~hkelE~l~A~f~g~e~-a~vF~mGf-~TNs~~~p~l~----  218 (519)
T KOG1357|consen  151 QSVGPCAEASLKSFDKYGLSRCSS----RHE--AGTTEEHKELEELVARFLGVED-AIVFSMGF-ATNSMNIPSLL----  218 (519)
T ss_pred             ccCCcCChHHHHHHHHhccccccc----chh--cccHHHHHHHHHHHHHhcCCcc-eEEEeccc-cccccCcceee----
Confidence            345677888888887765442211    111  1224578889999999999984 56666653 45666777777    


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-------C------ceEEEEecccCccc
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-------D------TILVSVMLVNNEIG  150 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-------~------~~~v~~~~~~~~tG  150 (397)
                      .++.-|+-....|.|....+...   |++++....+     |.++||+.+.+       +      ..+|+++.+.++-|
T Consensus       219 ~~gsLIiSDelNHaSi~~GaRLS---gAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg  290 (519)
T KOG1357|consen  219 GKGSLIISDELNHASLITGARLS---GATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEG  290 (519)
T ss_pred             cCCcceeeccccchheecccccc---CceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccC
Confidence            78899999999999988877766   9999988877     77888887743       1      23778888888999


Q ss_pred             ccccHHHHHHHHHhcCcEEEEecccccCcccc---------ccCcccccEEEeccccccCCCCceEEEEecCCCCccccc
Q psy8850         151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ  221 (397)
Q Consensus       151 ~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~---------~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~  221 (397)
                      .++++.++++++|+|.++++.|++|+.|....         ....-++|++.+++.|.+|..| |++..+++..+.++..
T Consensus       291 ~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G-Gyiagsk~lid~lrt~  369 (519)
T KOG1357|consen  291 TIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG-GYIAGSKELIDYLRTP  369 (519)
T ss_pred             eecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc-ceecCcHHHHhhhccC
Confidence            99999999999999999999999999766521         1222268999999999888865 9999998777666543


Q ss_pred             cccCCccccccCCCCchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEE
Q psy8850         222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-----IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI  296 (397)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  296 (397)
                      ....     .-....+.+.+.....+++.+.     +..++..+++.++..+++..|.+  .++.+.+..+.....++..
T Consensus       370 s~~~-----~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~--~gfivyG~~dSpVvplll~  442 (519)
T KOG1357|consen  370 SPSA-----LYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQK--MGFIVYGNNDSPVVPLLLY  442 (519)
T ss_pred             CCce-----eecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhc--CcEEEecCCCCCcceeeec
Confidence            3221     1111222222222334555443     24677889999999999999998  8888888766443334333


Q ss_pred             EecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         297 SFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       297 ~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ....  -..+-+.+.  ++.+....+..+                +.-...+|+|.+..++.|+++++++.+.+.=++.
T Consensus       443 ~~~k--~~~f~r~~l~~nigvVvvgfPat----------------pl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~~  503 (519)
T KOG1357|consen  443 GPAK--IVAFSREMLERNIGVVVVGFPAT----------------PLLESRARFCLSASHTKEDLDRALEVIDRVGDED  503 (519)
T ss_pred             Cccc--ccHHHHHHHhcCceEEEEeCCCc----------------hHHHhHHHhhhcccccHHHHHHHHHHHhhhchhh
Confidence            3222  234443443  554444332221                1123667999999999999999999988775443

>KOG0633|consensus

Probab=99.76  E-value=2.2e-17  Score=137.00  Aligned_cols=284  Identities=15%  Similarity=0.083  Sum_probs=191.7

Q ss_pred             HHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC-CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCC
Q psy8850          46 ARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI  124 (397)
Q Consensus        46 ~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~  124 (397)
                      ++..++.--+..+++|.+.-|+.+.++++++..+    .|| ++|++..|.|.-+.-.+..-   ++.|+.+|.+.++.+
T Consensus        74 ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c----~PGkeKIl~cPPtysMY~v~A~iN---d~eVvkvpl~pdF~l  146 (375)
T KOG0633|consen   74 LSDALAQDKPLTSDNICVGVGSDELIDLIIRCVC----DPGKEKILDCPPTYSMYVVDAAIN---DAEVVKVPLNPDFSL  146 (375)
T ss_pred             hhhhcccCCCCCccceEEecCcHHHHHHHHhhee----cCCccceeecCCcceeEEEEeecC---CceEEEecCCCCccc
Confidence            4444444456778899999999999999999988    677 89999999886665433333   889999999999999


Q ss_pred             CHHHHHHHhcC--CceEEEEecccCcccccccHHHHHHHHHhc-CcEEEEecccccC----ccccccCcccccEEEeccc
Q psy8850         125 TLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGELCRSK-GVIFHCDAAQAVG----KIDINIQNYKVDLMSFSAH  197 (397)
Q Consensus       125 d~~~l~~~i~~--~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~-gi~livD~a~~~~----~~~~~~~~~~~d~~~~s~~  197 (397)
                      +.+++.+.+..  .++++++++|.||||.+...+.|.++..-- |.+|++|++|--.    +.-.-...+..-+++.+++
T Consensus       147 nvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlS  226 (375)
T KOG0633|consen  147 NVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLS  226 (375)
T ss_pred             cHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhh
Confidence            99999988764  689999999999999999999998887765 8999999998622    2111233445667888999


Q ss_pred             cccCCCCc--eEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8850         198 KIYGPKGI--GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLM  274 (397)
Q Consensus       198 K~~g~~g~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~-~~~~~~~~~~~~~~~~~~~l~~~l~  274 (397)
                      |.+|..|+  |+.+.+.....-+......        .+.......+++ +|+. .-...++..+..+.+.+.+|.+.|+
T Consensus       227 KsfGLAGiRvG~~~~~~~ia~iln~~KaP--------YNiS~~~s~~AL-~Als~~n~kkme~~rdaiv~er~RL~keLt  297 (375)
T KOG0633|consen  227 KSFGLAGIRVGYGAFPLSIAEILNRAKAP--------YNISVAGSVAAL-AALSDSNGKKMEDVRDAIVRERERLFKELT  297 (375)
T ss_pred             hhcCcceeEeecccccHHHHHHHHhccCC--------ccccchhHHHHH-HhcCcccchHHHHHHHHHHHHHHHHHHHhh
Confidence            98887774  5444443332222221111        011122333444 2332 1122477888888999999999999


Q ss_pred             hhcCcEEEeCCCCCCCCceEEEEecCCCh---HHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEE
Q psy8850         275 ESIEEIYINGDMNNRIPHNLNISFNFIEG---ESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF  348 (397)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  348 (397)
                      + ++.+.-+  +.....+++.+.+.+.+.   ..+...+.   |+.++-..                  ......+++||
T Consensus       298 ~-v~~~~~~--~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrg------------------se~~c~G~lRi  356 (375)
T KOG0633|consen  298 E-VPFLNDY--PGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRG------------------SEEGCKGYLRI  356 (375)
T ss_pred             c-CccccCC--CCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcC------------------CccccceeEEE
Confidence            9 7765422  223335666666654332   33333332   66665321                  11224589999


Q ss_pred             eeCCCCCHHHHHHHHHHHHHH
Q psy8850         349 TIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       349 ~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +++   ++|+-+-+++.++++
T Consensus       357 tvG---t~EentvL~k~~K~~  374 (375)
T KOG0633|consen  357 TVG---TPEENTVLMKCLKQF  374 (375)
T ss_pred             EcC---CcccchHHHHHHHhh
Confidence            998   678888888888765

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.76  E-value=4.5e-19  Score=157.61  Aligned_cols=247  Identities=21%  Similarity=0.263  Sum_probs=164.7

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +.+++.+++.+....         .. +|...+...++++.+++++|.+  ..+|+++||.|+.+++++++    +|++.
T Consensus         7 ~~~~m~~a~~~a~~g---------d~-~Yg~D~~~~~l~~~i~~l~g~e--~a~f~~sGT~An~~al~~~~----~~~~~   70 (290)
T PF01212_consen    7 PTPAMLEAMAAANVG---------DD-AYGEDPTTARLEERIAELFGKE--AALFVPSGTMANQLALRAHL----RPGES   70 (290)
T ss_dssp             S-HHEEHHHHHTTSB----------C-CTTSSHHHHHHHHHHHHHHTSS--EEEEESSHHHHHHHHHHHHH----HTTEE
T ss_pred             CCHHHHHHHHccccC---------Cc-ccCCChhHHHHHHHHHHHcCCC--EEEEeCCCChHHHHHHHHHH----hcCCc
Confidence            678888888554432         11 2445668899999999999988  56799999999999999998    68899


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcc-ccccc---HHHH
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEI-GVIQP---ILEI  158 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~t-G~~~~---l~~i  158 (397)
                      |++.+++|..+...-......|.++..++.+++|.+|+++|++.+.+      ++++|+++.+++.. |.+++   +++|
T Consensus        71 vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai  150 (290)
T PF01212_consen   71 VICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAI  150 (290)
T ss_dssp             EEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHH
T ss_pred             eeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHH
Confidence            99999988765554433223499999999887799999999999865      57899999998874 77887   5678


Q ss_pred             HHHHHhcCcEEEEecccc------cCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccc--cccCCcccc
Q psy8850         159 GELCRSKGVIFHCDAAQA------VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGGHEYG  230 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~------~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~--~~~~~~~~~  230 (397)
                      .++||+||++|++|++--      .+....++. .++|++++|++|.+|.++.++++.+++.+++....  ..++     
T Consensus       151 ~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~-~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~~~~~~k~~gg-----  224 (290)
T PF01212_consen  151 SELAREHGLPLHMDGARLANAAAALGVSLAEIA-AGADSVSFGGTKNGGAPGGAVLAGNKEFIAKARRQRKRLGG-----  224 (290)
T ss_dssp             HHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH-TTSSEEEEETTSTT-SSSEEEEEESHHHHHHHHHHHHHHTH-----
T ss_pred             HHHHHhCceEEEEehhhHHHhhhcccccHHHHh-hhCCEEEEEEEcccccccceEEEechHHHHHHHHHHHHhcc-----
Confidence            888999999999998842      122122222 27999999999955544458888887643332111  1111     


Q ss_pred             ccCCCCchhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850         231 LRSGTLATHQIVGM-----GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       231 ~~~~~~~~~~~~~l-----~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  284 (397)
                          .....++.+.     ..++..+. .......+..+++++|.+.|+. ++.. +..
T Consensus       225 ----~~~~~G~~~a~~~~~~~~l~~l~-~~~~~~~~~~~~A~~La~~l~~-~~~~-~~~  276 (290)
T PF01212_consen  225 ----GMRQAGVLAAAELYQFAALRALE-LWLERARHANAMAKRLAAGLEA-LGGV-LPR  276 (290)
T ss_dssp             ----HHHHTTHHHHHHHHHHHHHCHEE-CSHHHHHCHHHHHHCHHHCHHE-ECEE-EET
T ss_pred             ----CeeecceeeeechhhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHH-CCCc-ccC
Confidence                1110111111     01111111 1244566777889999999988 5543 443

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.76  E-value=9.5e-16  Score=145.38  Aligned_cols=321  Identities=14%  Similarity=0.126  Sum_probs=182.7

Q ss_pred             CCCCHHHH--HHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           7 TPIDPRVV--DKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         7 ~~~~~~v~--~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      +..+|.|.  +++.+++.... ..+.. ..    ...+...++.+.|+++.+. ..+.++|++||++|++.+++.... +
T Consensus        53 Gh~~p~v~~~~ai~~q~~~~~~~~~~~-~~----~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~-~  126 (431)
T TIGR03251        53 GMNHPALVDDLAFRARLGAAAVNKPSN-SD----VYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFD-W  126 (431)
T ss_pred             CCCChhhhHHHHHHHHHHHhhhccccc-CC----CCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHH-H
Confidence            45678999  89999887532 11111 11    1123345566666666532 235799999999999999996543 3


Q ss_pred             cc-----------CCCEEEEcCCCChhhHHHHHHHhh-CCcEEE--------Ee--c-----cCCCC--------CCCHH
Q psy8850          83 KK-----------RGKHIITVQTEHKSVLDSIRKLEN-DGFRVT--------YL--K-----PKNNG--------LITLS  127 (397)
Q Consensus        83 ~~-----------~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~--------~v--~-----~~~~~--------~~d~~  127 (397)
                      +.           .+.+|+....+|++.......... .+..-.        .+  |     .+...        .-+++
T Consensus       127 t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~  206 (431)
T TIGR03251       127 KSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALR  206 (431)
T ss_pred             hhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHH
Confidence            21           135677777766665543332211 101100        01  1     11000        01244


Q ss_pred             HHHHHhc---CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEec
Q psy8850         128 QLEEKIC---SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFS  195 (397)
Q Consensus       128 ~l~~~i~---~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s  195 (397)
                      ++++.+.   +++.+|+++.++...|.+.|    +++|.++|++||+++|+|++++ +|..    ..+.....+|+++++
T Consensus       207 ~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~g  286 (431)
T TIGR03251       207 QARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFG  286 (431)
T ss_pred             HHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEec
Confidence            5555663   57899999999999998764    7899999999999999999987 4332    122234478999876


Q ss_pred             cccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8850         196 AHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME  275 (397)
Q Consensus       196 ~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~  275 (397)
                        |.. + ..|++..+ +........ ..+......+. +.+...+++..++++.+.+.  .+.++..++.+++.+.|++
T Consensus       287 --K~~-~-~~g~~~~~-~i~~~~~~~-~~~~~~~~~T~-~gnpl~~aaa~a~L~~l~~~--~l~~~~~~~g~~l~~~L~~  357 (431)
T TIGR03251       287 --KKT-Q-VCGIMAGR-RVDEVADNV-FAVPSRLNSTW-GGNLVDMVRATRILEIIEEE--RLVDNARVQGAHLLARLHE  357 (431)
T ss_pred             --ccC-c-cceEEecc-hHHHhhhhc-ccCccccCCCC-CCCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence              733 3 23555433 211111101 01000011122 23455566666888887652  3445555555666655544


Q ss_pred             h---cCcEEEeCCCCCCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850         276 S---IEEIYINGDMNNRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT  349 (397)
Q Consensus       276 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (397)
                      .   .+++  ..+.. ..+.++.+.++... ...+...+.  |+.+.+..                       .+.+|++
T Consensus       358 l~~~~~~~--i~~vr-g~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~g-----------------------~~~lr~~  411 (431)
T TIGR03251       358 LAAEFPHL--VSNPR-GRGLMCAFDLPSTADRDEVIRQLYREGVLLLGCG-----------------------ERSIRFR  411 (431)
T ss_pred             HHHhCccc--eeccc-ccceeEEEEeCCHHHHHHHHHHHHhCCeEEecCC-----------------------CCeEEEE
Confidence            1   2322  22211 12445566665322 234555554  77665421                       2679999


Q ss_pred             eCCCCCHHHHHHHHHHHHH
Q psy8850         350 IGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       350 ~~~~~~~~~i~~~~~~l~~  368 (397)
                      ++..++++|||+++++|.+
T Consensus       412 P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       412 PPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             CCccCCHHHHHHHHHHHHh
Confidence            9999999999999999875

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.75  E-value=1.4e-15  Score=139.66  Aligned_cols=292  Identities=17%  Similarity=0.195  Sum_probs=175.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEE
Q psy8850          36 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVT  114 (397)
Q Consensus        36 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~  114 (397)
                      +...-+.+.+++..++++.|.+..+.-+..++|.+-+.++.+... ..+++++|+++...||.+...+..... .|++++
T Consensus       105 sQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~-~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv  183 (429)
T PF02347_consen  105 SQGRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRA-TKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIV  183 (429)
T ss_dssp             BHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHH-HTT---EEEEETTS-CHHHHHHHHHCCHCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHh-cccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEE
Confidence            334457788999999999999966677888999888877665443 223346999999999999987776544 399999


Q ss_pred             EeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc-ccccCcccccEEE
Q psy8850         115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-DINIQNYKVDLMS  193 (397)
Q Consensus       115 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~-~~~~~~~~~d~~~  193 (397)
                      .++.++++..|        .+++.+|++++|++ .|.+.++++|.+++|++|+++++ .+.-.... -....++++|+++
T Consensus       184 ~~~~~~~~~~d--------~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~v  253 (429)
T PF02347_consen  184 EVPLDEDGTTD--------DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVV  253 (429)
T ss_dssp             EE-BBTTCSB---------STTEEEEEEESS-T-TSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEE
T ss_pred             EecccccCCcc--------ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEe
Confidence            99998877666        67899999999964 59999999999999999999988 66442211 1234566999997


Q ss_pred             ecccc-c-----cCCCCceEEEEecCCCCcccccccc------CCc-----------cccccCCCCchh---HHHHHHHH
Q psy8850         194 FSAHK-I-----YGPKGIGALYIRRNPRTRIEAQIHG------GGH-----------EYGLRSGTLATH---QIVGMGEA  247 (397)
Q Consensus       194 ~s~~K-~-----~g~~g~g~~~~~~~~~~~~~~~~~~------~~~-----------~~~~~~~~~~~~---~~~~l~~a  247 (397)
                      ++ +| +     +|+++.|++.+++++...+.-.+.|      |..           ..+..-.+.|..   .++++.++
T Consensus       254 g~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~  332 (429)
T PF02347_consen  254 GE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAA  332 (429)
T ss_dssp             EC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHH
T ss_pred             eC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHH
Confidence            77 56 5     4455689999998866665443332      111           111223344432   33333333


Q ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccC
Q psy8850         248 FR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACT  322 (397)
Q Consensus       248 l~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~  322 (397)
                      +-   +..+|++++.++...++.++.+.|++ +.+..+...   .+.-.+....+.....++.+...  |+....     
T Consensus       333 ~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~-~~~~~~~~~---~f~e~v~~~~~~~~~~~l~~~~~~~gl~~~~-----  403 (429)
T PF02347_consen  333 IYLAYLGPEGLREIAERIHLNAHYLAERLKK-IYGLPFDNP---FFFEFVVVFSKDKEVEELLKRGIEGGLNLRY-----  403 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTBECSSSS---SBSSEEEEESS-HHHHHHHHTT----EEEGG-----
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccCCC---CceeeeeecCCcHHHHHHHHHHHhcCCCccc-----
Confidence            32   22568999999999999999999999 544433221   11222222222111112222222  311110     


Q ss_pred             CCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         323 SASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       323 ~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                                        ...+.+-+|++...+++|||++++++
T Consensus       404 ------------------~~~~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  404 ------------------PDDGALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             ------------------G-SSEEEEE--TT--HHHHHHHHH--
T ss_pred             ------------------cCCCeEEEEccCCCCHHHHHHHHhcC
Confidence                              01258899999999999999999875

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.75  E-value=2.6e-15  Score=141.99  Aligned_cols=320  Identities=13%  Similarity=0.109  Sum_probs=181.6

Q ss_pred             CCCCHHHHHHHHHH-HhhccCCCCCCCcchhhhHHHHHHHHHHHH----HHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           7 TPIDPRVVDKMIPY-LRVQFGNPASRNHIYGWTAEKAIEKARNEV----AQLIYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         7 ~~~~~~v~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----a~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +..+|.|.++++++ ......+..  .+ .    .+...++.+.+    +++..-+.+.++|++||++|++.+++....+
T Consensus        73 Gh~~p~i~~Ai~~q~~~~~l~~~~--~~-~----~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~  145 (464)
T TIGR00699        73 GYNNPALLKAAQSPEMATTLINRP--AL-G----NFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMY  145 (464)
T ss_pred             CCCCHHHHHHHHHHHHHHhhcccc--cC-C----cHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHH
Confidence            46789999999984 232111111  11 1    11223344444    4444333357999999999999999966432


Q ss_pred             hcc-------------------------CCCEEEEcCCCChhhHHHHHHHhhC------C---cEEEEeccCCC-C----
Q psy8850          82 YKK-------------------------RGKHIITVQTEHKSVLDSIRKLEND------G---FRVTYLKPKNN-G----  122 (397)
Q Consensus        82 ~~~-------------------------~g~~vl~~~~~~~s~~~~~~~~~~~------g---~~v~~v~~~~~-~----  122 (397)
                      +..                         ++.+|+....+|++.......+...      +   ..+..+|.... .    
T Consensus       146 ~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~  225 (464)
T TIGR00699       146 YRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEE  225 (464)
T ss_pred             HHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCccccccc
Confidence            210                         0236777777666655443332110      1   11122332210 0    


Q ss_pred             ---------CCCHHHHHHHhc---CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----c
Q psy8850         123 ---------LITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----D  181 (397)
Q Consensus       123 ---------~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~  181 (397)
                               .-+++++++++.   +++.+|+++.+....|.+.|    ++++.++|++||+++|+|+++. +|..    .
T Consensus       226 ~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa  305 (464)
T TIGR00699       226 HVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWA  305 (464)
T ss_pred             ccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhH
Confidence                     013566777774   35889999999999999887    8999999999999999999986 3221    1


Q ss_pred             cccCcc--cccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy8850         182 INIQNY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEEL  259 (397)
Q Consensus       182 ~~~~~~--~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~  259 (397)
                      .+....  .+|+++++  |.+|..  |+++.+ +......+...      ..+. ..+...+++..++|+.+.+  .++.
T Consensus       306 ~e~~gv~~~PDi~t~g--K~lg~g--G~~~~~-~~~~~~~~~~~------~~T~-~gnp~~~aaa~a~L~~l~~--~~l~  371 (464)
T TIGR00699       306 HEHWNLDDPPDMVTFS--KKFQTA--GYFFHD-PAFRPNKPYRQ------FNTW-MGDPSRALILREIIQEIKR--KDLL  371 (464)
T ss_pred             HHhcCCCCCCCEEEeh--hhhccC--Cccccc-hhccCCCCccc------ccCC-CCCHHHHHHHHHHHHHHHh--cCHH
Confidence            111222  38998887  944321  223222 21111111111      1122 3344556666678887765  4566


Q ss_pred             HHHHHHHHHHHHHHhhhcCcEE-EeCC-CCCCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccCCCCCChhhHHHh
Q psy8850         260 KRILFLQKRLYNGLMESIEEIY-INGD-MNNRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACTSASLEPSYVLRA  334 (397)
Q Consensus       260 ~~~~~~~~~l~~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~  334 (397)
                      ++..++.++|++.|++....+. ++.. .....+.++.+.++... ...+.+.+.  |+.+...                
T Consensus       372 ~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~~~~~i~~~~~~~Gvl~~~~----------------  435 (464)
T TIGR00699       372 ENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEAKRDKLLKKARNNGVNIGGC----------------  435 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHHHHHHHHHHHHHCCcEEecC----------------
Confidence            6777777777777766111121 1111 10112455555654211 234444443  6666431                


Q ss_pred             hCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         335 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       335 ~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                             +.+.|||.++..++++|||+++++|.+++
T Consensus       436 -------g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       436 -------GVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             -------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence                   12789999999999999999999998763

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.75  E-value=8.3e-16  Score=145.91  Aligned_cols=326  Identities=15%  Similarity=0.152  Sum_probs=190.7

Q ss_pred             CCCCCHHHHH--HHHHHHhhccC-CCCCCCcchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           6 TTPIDPRVVD--KMIPYLRVQFG-NPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         6 ~~~~~~~v~~--a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      .+..+|.|.+  ++++++..... .+.. .   . ...+...++.+.|+++.+ -..+.++|++||++|++.+++....+
T Consensus        59 lGh~~p~v~~~~ai~~ql~~l~~~~~~~-~---~-~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~  133 (443)
T PRK08297         59 LGMNHPALADDPEFRAELGRAALNKPSN-S---D-VYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDW  133 (443)
T ss_pred             CCCCChHHhhHHHHHHHHHHhhhhcccc-C---C-cCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHH
Confidence            3467899999  99998876321 1111 0   0 112345567777777763 23357999999999999999965432


Q ss_pred             h------cc----CCCEEEEcCCCChhhHHHHHHHhh-CC-----cEE---EEeccCC-----CC-C---------CCHH
Q psy8850          82 Y------KK----RGKHIITVQTEHKSVLDSIRKLEN-DG-----FRV---TYLKPKN-----NG-L---------ITLS  127 (397)
Q Consensus        82 ~------~~----~g~~vl~~~~~~~s~~~~~~~~~~-~g-----~~v---~~v~~~~-----~~-~---------~d~~  127 (397)
                      .      ..    .+.+|+....+|++.......+.. ..     ...   ..++...     .+ .         -+++
T Consensus       134 ~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (443)
T PRK08297        134 KSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALA  213 (443)
T ss_pred             hhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHH
Confidence            1      01    135677777766665544333211 00     000   0011100     00 0         0245


Q ss_pred             HHHHHhc---CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEec
Q psy8850         128 QLEEKIC---SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFS  195 (397)
Q Consensus       128 ~l~~~i~---~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s  195 (397)
                      ++++.+.   +++.+|+++.++...|.+.|    ++++.++|++||+++|+|+++. +|...    .+.....+|+++++
T Consensus       214 ~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g  293 (443)
T PRK08297        214 QARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFG  293 (443)
T ss_pred             HHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEec
Confidence            5566664   57889999999988898755    7899999999999999999986 43321    11223368999876


Q ss_pred             cccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8850         196 AHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME  275 (397)
Q Consensus       196 ~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~  275 (397)
                        |.++ . .|++ +.++........+... .....+.+ .+...+++..++++.+.+  +++.++..++.+++++.|++
T Consensus       294 --K~l~-~-~a~l-~~~~i~~~~~~~~~~~-~~~~~T~~-gnpl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~  364 (443)
T PRK08297        294 --KKTQ-V-CGIM-AGRRVDEVEDNVFAVS-SRINSTWG-GNLVDMVRARRILEVIEE--DGLVENAARQGEYLLARLEE  364 (443)
T ss_pred             --cccc-c-ccee-cchHHHHhhhhhccCc-cccCCCCC-ccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH
Confidence              9443 2 2444 3332111111111000 00112222 344555555577887765  35667777777777777765


Q ss_pred             h---cCcE--EEeCCCCCCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         276 S---IEEI--YINGDMNNRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       276 ~---~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      .   .+.+  .+.+     .+.++.+.|.+.. ...+...+.  |+.+.++.                       .+.+|
T Consensus       365 l~~~~~~~~~~vrg-----~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~~-----------------------~~~lr  416 (443)
T PRK08297        365 LAAEFPAVVSNVRG-----RGLMCAFDLPTTADRDEVIRRLWEEGVLVLPCG-----------------------ERSIR  416 (443)
T ss_pred             HHHHCCCcceeeec-----cceEEEEEecCHHHHHHHHHHHHHCCEEEecCC-----------------------CCeEE
Confidence            1   2322  1111     1456666665322 234554443  77765421                       26799


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      |+++..++++|+|+++++|.++++++
T Consensus       417 ~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        417 FRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             EECCccCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999998764

>KOG1358|consensus

Probab=99.75  E-value=1.1e-15  Score=134.20  Aligned_cols=324  Identities=14%  Similarity=0.142  Sum_probs=215.0

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      ..+++.+.....+..+.....  +....|...+...++++.|++++|++ +.|+...|-+ ++..++-++.    ++||.
T Consensus       109 ~~~~ike~a~~~lrkyGvGsC--GPrGFYGt~DvHldlE~~iakF~G~E-~aivYs~gF~-ti~S~ipafs----KrGDI  180 (467)
T KOG1358|consen  109 ENEEIKEEASFTLRKYGVGSC--GPRGFYGTIDVHLDLEKRIAKFMGTE-DAIVYSYGFS-TIESAIPAFS----KRGDI  180 (467)
T ss_pred             ccHHHHHHHHHHHHHhCCCCc--CCCcccccceeecccHHHHHHhhCCc-ceeeeccccc-hhhhcchhhh----ccCcE
Confidence            367888888888877532222  22333455678889999999999998 4677777765 5666777777    89999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCc-------------eEEEEecccCcccccccH
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDT-------------ILVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~-------------~~v~~~~~~~~tG~~~~l  155 (397)
                      |++....+.+....++..   .-++.+...+     |.+++|..+.+++             +.++++...-++|.++|+
T Consensus       181 i~~de~~nfaIq~GlqlS---RS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl  252 (467)
T KOG1358|consen  181 IFVDEAVNFAIQKGLQLS---RSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPL  252 (467)
T ss_pred             EEEehhhhHHHHHHHhhh---hheeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCccccc
Confidence            999998888888777766   5566666655     7778877764432             477888888899999999


Q ss_pred             HHHHHHHHhcCcEEEEecccccCccc---------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      .+|+++..+|-..||+|+.+++|...         +....-.+|++++|+.-..+..| |+..++.-. ...+...   +
T Consensus       253 ~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G-gFc~G~~~i-~~hQrLS---g  327 (467)
T KOG1358|consen  253 PEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG-GFCAGKSFI-ADHQRLS---G  327 (467)
T ss_pred             HHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC-ceeecceee-Eeeeecc---c
Confidence            99999999999999999999876642         22322368999999877555433 666664322 2111111   1


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-----
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-----  301 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  301 (397)
                      ..+.|..+.|+...-++. .++.... +-+.+.+.+......+.+.|.. ..++.+.+.+.   ..++.+.+...     
T Consensus       328 ~~Y~fSAslPp~la~aa~-~ai~i~~-~~p~~~~~L~~k~~~~H~~l~~-~s~~~v~~~~~---SPi~hl~l~~~~~s~e  401 (467)
T KOG1358|consen  328 SGYCFSASLPPYLAGAAI-KAILIEE-WNPEIVQPLRAKVAKFHAALSS-NSGFIVSGSPE---SPIIHLQLERSYGSRE  401 (467)
T ss_pred             cceeeeccCchhhhhhHH-HHHHHHh-hCcchhhhhhccccccchhhhc-CCceEEecCcC---CceeeeeecccccchH
Confidence            223445555655444444 3444332 2244666777777778888877 66778887655   55666666541     


Q ss_pred             ChHHHHHHhC------CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK------DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       302 ~~~~~~~~l~------~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +...+.+.+.      ++.+...           ..+..  .+....+..|||++...++++|++++++.|+++...
T Consensus       402 ~e~~lL~eivd~~i~~~~ll~~a-----------~~~~~--~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~  465 (467)
T KOG1358|consen  402 KEEKLLEEIVDKCIAEGVLLTRA-----------KYLEK--LERCPIPPSIRICVSAGMSEEELERAAELIKEVASA  465 (467)
T ss_pred             HHHHHHHHHHHHHHhhcceehhh-----------hhhhh--cccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            1222222222      3333321           12211  112223478999999999999999999999988654

>KOG0629|consensus

Probab=99.74  E-value=4.6e-16  Score=137.83  Aligned_cols=315  Identities=17%  Similarity=0.224  Sum_probs=203.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHhhh----------ccCCCEEEEcCCCChhhHHHHH
Q psy8850          36 GWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFY----------KKRGKHIITVQTEHKSVLDSIR  104 (397)
Q Consensus        36 ~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~~~----------~~~g~~vl~~~~~~~s~~~~~~  104 (397)
                      .+.+.....++-..+.+..|.+.+ +-+|++||+-++.-++....-..          .-|.-.+.+++.+|+|...+..
T Consensus       136 APvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa  215 (510)
T KOG0629|consen  136 APVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAA  215 (510)
T ss_pred             cceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHH
Confidence            333444667788899999999875 78899999888777776543211          0123456788999999999999


Q ss_pred             HHhhCCcEEEEeccCCCCCCCHHHHHHHhcC---C---ceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccC
Q psy8850         105 KLENDGFRVTYLKPKNNGLITLSQLEEKICS---D---TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG  178 (397)
Q Consensus       105 ~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---~---~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~  178 (397)
                      .++-.-..++.|++++.|.|++++||++|.+   +   |-+|..+..++.-|...|++.|+++|++|++|++||+|.+.|
T Consensus       216 ~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGg  295 (510)
T KOG0629|consen  216 FLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGG  295 (510)
T ss_pred             HhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccc
Confidence            8844337888999999999999999999853   3   678899999999999999999999999999999999999976


Q ss_pred             cc-ccc----cCcc-cccEEEeccccc-cCCCCceEEEEecCC-CCccccc----cc--cCCc-------cccccCC-CC
Q psy8850         179 KI-DIN----IQNY-KVDLMSFSAHKI-YGPKGIGALYIRRNP-RTRIEAQ----IH--GGGH-------EYGLRSG-TL  236 (397)
Q Consensus       179 ~~-~~~----~~~~-~~d~~~~s~~K~-~g~~g~g~~~~~~~~-~~~~~~~----~~--~~~~-------~~~~~~~-~~  236 (397)
                      .+ +..    +... .+++++.+.||+ ..|..++.++.+.+- +......    .+  +...       ......| ..
T Consensus       296 lLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~  375 (510)
T KOG0629|consen  296 LLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHV  375 (510)
T ss_pred             cccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccc
Confidence            54 211    1111 589999999994 557778887776442 1111100    00  0000       0111122 12


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC--------hHHHHH
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE--------GESLLM  308 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  308 (397)
                      +..-++-++.+-.  ..|+++..+++.++++++.+.|++ -+++..+....   +-.+++.|..++        ..+...
T Consensus       376 D~FKlWlmwkaKG--~~Gfe~~v~k~~~lA~yl~~~lre-r~~~~~l~~~~---pe~~nv~fw~vp~~lR~~~~~~e~~~  449 (510)
T KOG0629|consen  376 DVFKLWLMWKAKG--TQGFEAQVDKCLRLAEYLYDRLRE-REGFEMLFELE---PEHVNVCFWYVPPSLRGWQENPERDS  449 (510)
T ss_pred             cHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHh-cccceehhcCC---CceEEEeeccCchHhccCcccchhhh
Confidence            2222333322211  236888999999999999999999 77766665433   223344443211        122222


Q ss_pred             HhCCcEe-------cccCccCCCCCChhhHHHhhCCCc-cccCceEEEeeCCC-CCHHHHHHHHHHHHHH
Q psy8850         309 AIKDIAV-------SSGSACTSASLEPSYVLRALGCND-ELAHSSIRFTIGRF-TTEKEIDFTIKLLKMK  369 (397)
Q Consensus       309 ~l~~i~~-------~~g~~~~~~~~~~~~~~~~~g~~~-~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~  369 (397)
                      +|..|+-       ..|.             ..+|..+ ...++++|..++.. .+.+|+|.+++-|...
T Consensus       450 rL~kVaPkIK~~Mm~~Gt-------------~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl  506 (510)
T KOG0629|consen  450 RLVKVAPKIKERMMKKGT-------------TMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL  506 (510)
T ss_pred             HHHhhCcHHHHHHHhccc-------------eeeEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence            2221110       1110             0111111 22357899887743 6789999998877653

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.73  E-value=2.5e-15  Score=140.64  Aligned_cols=229  Identities=18%  Similarity=0.170  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--  119 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--  119 (397)
                      .+.++++..++.+|++. ..++++|.|.|+..++++++    ++||.|+++.++|.|....+...   |+.++++...  
T Consensus        71 ~i~eAqe~aA~~fgAd~-tyFvvNGTS~ank~vi~a~~----~~GD~VLvdRN~HKSi~~glila---Ga~Pvyl~p~~n  142 (557)
T COG1982          71 PIKEAQELAARVFGADH-TYFVVNGTSTANKAVINAVL----TPGDKVLVDRNCHKSIHHGLILA---GATPVYLEPSRN  142 (557)
T ss_pred             cHHHHHHHHHHHhCCCc-eEEEECCccHHHHHHHHhhc----CCCCEEEecCCccHHHHHHHHHc---CCceEEecCCCC
Confidence            57889999999999984 68889999999999999999    89999999999999999998777   8888888554  


Q ss_pred             C----CCCCCHHHHHHHhcCC--c-eEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc----ccc-cCcc
Q psy8850         120 N----NGLITLSQLEEKICSD--T-ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI----DIN-IQNY  187 (397)
Q Consensus       120 ~----~~~~d~~~l~~~i~~~--~-~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~----~~~-~~~~  187 (397)
                      +    -+.++.+.+++.+.+.  . +++++++++ .-|+.+++++|++.++.+++++.+|++++....    ..+ -...
T Consensus       143 p~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~  221 (557)
T COG1982         143 PLYGIIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG  221 (557)
T ss_pred             ccccccCCCCHHHHHHHHHhChhhheeEEEecCc-cceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhc
Confidence            2    2578999999877553  3 677777664 459999999999999999999999999984321    112 1224


Q ss_pred             cccEEEecccc-ccCCCCceEEEEecC-CC--CccccccccCCccccccCCCCchhHHHHHHHHHHHHHH-H---HHHHH
Q psy8850         188 KVDLMSFSAHK-IYGPKGIGALYIRRN-PR--TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI-E---MKEEL  259 (397)
Q Consensus       188 ~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~---~~~~~  259 (397)
                      +.|+++.|.|| +.+....+.+.+++. ..  +++...+      .-..+++|++..++++..|-..... |   +....
T Consensus       222 ~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~------~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~  295 (557)
T COG1982         222 GADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEAL------MMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVI  295 (557)
T ss_pred             CceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHH------HHHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            78999999999 666666788888863 11  1222221      1133556777777777664443322 2   23336


Q ss_pred             HHHHHHHHHHHHHHhhhcCcEEEeCCC
Q psy8850         260 KRILFLQKRLYNGLMESIEEIYINGDM  286 (397)
Q Consensus       260 ~~~~~~~~~l~~~l~~~~~~~~~~~~~  286 (397)
                      +...+.++.+++...+ ++++.++.+.
T Consensus       296 ~~~i~~r~~~~~~~~~-~~~~~~~~~~  321 (557)
T COG1982         296 DEAIDFRKALRRLINE-IGFFPVLQPE  321 (557)
T ss_pred             HHHHHHHHHHHHHHHh-cCCeeecccc
Confidence            6667778888888877 7788877665

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.71  E-value=5.6e-15  Score=147.71  Aligned_cols=325  Identities=9%  Similarity=0.064  Sum_probs=190.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      ..+|++.+++.+++.+.. ...    ..+ ...+...++.+.|.+..+-+ .+.++|++||++|++.+++...+.+.   
T Consensus       382 h~~p~I~~Ai~~Qa~rl~-hv~----~~~-~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~  455 (817)
T PLN02974        382 TLQPELARAVAYAAGRYG-HVM----FPE-NVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDH  455 (817)
T ss_pred             CCCHHHHHHHHHHHhhCC-ccc----cCc-cCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhc
Confidence            358999999999998732 111    101 11234455666666654322 24799999999999999997654331   


Q ss_pred             c--------------CCCEEEEcCCCChhhHHHHHHHhhC-----Cc-E------EEEeccCC--------------C--
Q psy8850          84 K--------------RGKHIITVQTEHKSVLDSIRKLEND-----GF-R------VTYLKPKN--------------N--  121 (397)
Q Consensus        84 ~--------------~g~~vl~~~~~~~s~~~~~~~~~~~-----g~-~------v~~v~~~~--------------~--  121 (397)
                      +              .+.+||....+|++.......+...     .+ .      ...++...              .  
T Consensus       456 G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~  535 (817)
T PLN02974        456 GFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFS  535 (817)
T ss_pred             CCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccc
Confidence            1              2456777777766644433333210     00 0      01111100              0  


Q ss_pred             ----C---C-------C------------CHHHHHHHhc--------CCceEEEEecc-cCccccccc----HHHHHHHH
Q psy8850         122 ----G---L-------I------------TLSQLEEKIC--------SDTILVSVMLV-NNEIGVIQP----ILEIGELC  162 (397)
Q Consensus       122 ----~---~-------~------------d~~~l~~~i~--------~~~~~v~~~~~-~~~tG~~~~----l~~i~~l~  162 (397)
                          +   .       .            ..+.+++.+.        +++.+|+++.+ +...|++.|    ++.+.++|
T Consensus       536 ~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc  615 (817)
T PLN02974        536 SGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVC  615 (817)
T ss_pred             ccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHH
Confidence                0   0       0            0245666664        35789999985 788888776    68999999


Q ss_pred             HhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCCCCccccccccCCccccccCCC
Q psy8850         163 RSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT  235 (397)
Q Consensus       163 ~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (397)
                      ++||+++|.|+++. +|-.    ..+.....+|+++++  | +.|+ ..+|+++++++..+.+..-........+.+.+.
T Consensus       616 ~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~g--KgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~g  693 (817)
T PLN02974        616 RSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYA--KLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTA  693 (817)
T ss_pred             HHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeec--ccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCc
Confidence            99999999999987 2222    122233468999998  9 6554 468999999776555431000000112223333


Q ss_pred             CchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----hhhcCcEEEeCCCCCCCCceEEEEecCCC-------
Q psy8850         236 LATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGL----MESIEEIYINGDMNNRIPHNLNISFNFIE-------  302 (397)
Q Consensus       236 ~~~~~~~~l~~al~~~~~~--~~~~~~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  302 (397)
                       +..++++..++|+.+.+.  +.++.++..++.+++.+.|    .+ .+.+.-+.    ..+.++.+.+....       
T Consensus       694 -npl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~-~p~V~~VR----g~Gl~~~iel~~~~~~~~~~~  767 (817)
T PLN02974        694 -HPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISS-LPNVERVV----SLGTVLALELDAEGSGSGYSS  767 (817)
T ss_pred             -CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCeeEEE----eeeeEEEEEEecCCcccccch
Confidence             445555555888887652  4455566666666666555    33 33322221    12455666664211       


Q ss_pred             --hHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         303 --GESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       303 --~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                        ...+...+.   |+.+++.                        ++.||+.++..+++++++++++.|.+.+
T Consensus       768 ~~a~~v~~~~~~~~Gl~~r~~------------------------Gnvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        768 LYARSVVRRLRREDGIYARPL------------------------GNVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             HHHHHHHHHHHHhCCEEEEec------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence              112322222   5555431                        2789999999999999999999998764

>KOG1401|consensus

Probab=99.69  E-value=3.4e-14  Score=125.93  Aligned_cols=249  Identities=18%  Similarity=0.161  Sum_probs=158.7

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++..|++.+++.+...+.       .|..+.....-..++.+.|.+..+- ..+.|+|++|||+|++.+++...... ..
T Consensus        71 Ghanpev~ral~~q~~k~-------~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~-~~  142 (433)
T KOG1401|consen   71 GHANPEVARALAEQAKKL-------GHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFT-GK  142 (433)
T ss_pred             CCCCHHHHHHHHHHHhhh-------eeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhh-cc
Confidence            456899999999988773       2222222222255666777666642 45689999999999999999655432 22


Q ss_pred             C-----CEEEEcCCCChh-hHHHHHHHhhCCcEEEEecc---CCC----CCCCHHHHHHHhcCC---ceEEEEecccCcc
Q psy8850          86 G-----KHIITVQTEHKS-VLDSIRKLENDGFRVTYLKP---KNN----GLITLSQLEEKICSD---TILVSVMLVNNEI  149 (397)
Q Consensus        86 g-----~~vl~~~~~~~s-~~~~~~~~~~~g~~v~~v~~---~~~----~~~d~~~l~~~i~~~---~~~v~~~~~~~~t  149 (397)
                      +     ..++....+|++ ...++.....   .-...|.   .++    -.-|..++++.++..   +.+|+++.++...
T Consensus       143 ~~~~~~t~~Iaf~nsyHG~tlgals~~~~---s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaG  219 (433)
T KOG1401|consen  143 KHPEKKTKFIAFENSYHGRTLGALSVTGN---SKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAG  219 (433)
T ss_pred             cCCccceeEEEEecCcCCcchhHHHhhcc---cccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCC
Confidence            2     236666555554 4444443311   1111111   111    123789999999764   5899999999888


Q ss_pred             ccccc----HHHHHHHHHhcCcEEEEeccccc-Cccc----cccCcccccEEEecccc-ccCCCCceEEEEecCCCCccc
Q psy8850         150 GVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIE  219 (397)
Q Consensus       150 G~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~  219 (397)
                      |....    +..|..+|+++|+++|.|+++.. +...    ...-...+|+.++.  | +.|+..+|+.+++++..+.+.
T Consensus       220 G~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~a--K~L~gGlPigA~~v~~kV~~~i~  297 (433)
T KOG1401|consen  220 GIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVA--KPLGGGLPIGATGVRDKVAEMIS  297 (433)
T ss_pred             CcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeeh--hhccCCceeEEEeehHHHHhhcC
Confidence            87655    57899999999999999999873 3221    11122368988887  9 766677999999988777765


Q ss_pred             cccc---cCCccccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Q psy8850         220 AQIH---GGGHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLME  275 (397)
Q Consensus       220 ~~~~---~~~~~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~  275 (397)
                      +--+   |+      ..+ -|...+.+-..+++++.+  .+.+..+.-+.+++.+.+.+.+
T Consensus       298 ~~~~l~hg~------Tf~-gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~  351 (433)
T KOG1401|consen  298 PGDHLYHGG------TFS-GNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKK  351 (433)
T ss_pred             CCCccccCc------ccC-CChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4332   32      122 233444445567777754  3555566666666677777666

>KOG0258|consensus

Probab=99.68  E-value=1.9e-14  Score=126.28  Aligned_cols=294  Identities=17%  Similarity=0.140  Sum_probs=179.5

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      .|..+++.....+....+ ... .|+.    .+.++-+|+..|++.    |  +++++|++|.|++.|+..++..+..  
T Consensus        87 fp~Dai~RA~~~L~~~gG-s~G-aYS~----SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~--  158 (475)
T KOG0258|consen   87 FPTDAIKRAKRILNDCGG-SLG-AYSD----SQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIA--  158 (475)
T ss_pred             CCHHHHHHHHHHHHhcCC-ccc-cccc----ccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhc--
Confidence            466677777777777554 111 3333    334455555555554    4  3567899999999999999998886  


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcC-----CceEEEEecccCccccccc-
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQP-  154 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~-----~~~~v~~~~~~~~tG~~~~-  154 (397)
                       .+++-|+++-|.||-+...+..+   |...+.+.++  .++.+|.++|++.+.+     +++++++-+|.||||.+.+ 
T Consensus       159 -~~~~GvliPiPQYPLYsAti~l~---~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~  234 (475)
T KOG0258|consen  159 -GKKTGVLIPIPQYPLYSATISLL---GGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSE  234 (475)
T ss_pred             -CCCCceEeecCCCchhHHHHHHh---CCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcH
Confidence             67899999999999999888887   7776666555  4678999999988764     6889999999999999877 


Q ss_pred             --HHHHHHHHHhcCcEEEEecccc-----cCcc-------ccccCcccc-c---EEEecccc-cc---CCCCceEEEEec
Q psy8850         155 --ILEIGELCRSKGVIFHCDAAQA-----VGKI-------DINIQNYKV-D---LMSFSAHK-IY---GPKGIGALYIRR  212 (397)
Q Consensus       155 --l~~i~~l~~~~gi~livD~a~~-----~~~~-------~~~~~~~~~-d---~~~~s~~K-~~---g~~g~g~~~~~~  212 (397)
                        +++|..+|+++|+.++.|++|-     .++-       -..+..... .   +-..|.|| ..   |..| |++=+-.
T Consensus       235 e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RG-GYmEv~n  313 (475)
T KOG0258|consen  235 ENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRG-GYMESLN  313 (475)
T ss_pred             HHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccC-Ceeeccc
Confidence              7889999999999999999874     1110       011111122 1   22346667 43   4443 5544321


Q ss_pred             ---CCCCcc--------ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEE
Q psy8850         213 ---NPRTRI--------EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY  281 (397)
Q Consensus       213 ---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  281 (397)
                         +....+        .+...|- ....... .++.++-    ...+....+-+.+.+.++.++..+.+.+.. +.|+.
T Consensus       314 ~~prv~~qi~Kl~si~lc~~V~GQ-~~vdl~V-nPP~Pgd----~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns-~~gi~  386 (475)
T KOG0258|consen  314 RDPRVKQQIKKLASIKLCPQVSGQ-KLVDLVV-NPPKPGD----PSYDLFSSEKDGILSSLRSRAKLTEDAFNS-LEGIS  386 (475)
T ss_pred             CChhHHHHHHHHHhhhhcCCccch-hhhceec-CCCCCCC----cchhhhhhhhHhHHHHHHHHhHHHHHHHhh-cCcee
Confidence               111111        0111000 0000000 0111110    112222234466778888889999999999 99988


Q ss_pred             EeCCCCCCCCceEEEEec----------CCChHH-HHHHhC---CcEecccCccCC
Q psy8850         282 INGDMNNRIPHNLNISFN----------FIEGES-LLMAIK---DIAVSSGSACTS  323 (397)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~l~---~i~~~~g~~~~~  323 (397)
                      +...++. +..+-.+.++          +..+.. ....|.   ||++.||+.|..
T Consensus       387 cn~~qGA-MY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ  441 (475)
T KOG0258|consen  387 CNPVQGA-MYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQ  441 (475)
T ss_pred             eccCccc-eeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCC
Confidence            8866442 1111112222          111122 223333   999999987765

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.68  E-value=1.6e-13  Score=122.63  Aligned_cols=296  Identities=18%  Similarity=0.165  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhC-CcEEEEeccC
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPK  119 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g~~v~~v~~~  119 (397)
                      +.+.+++..++++.|.+..+--+-.++|.+-++++++..... +++++++|+...||.+...+...... |++++.++.+
T Consensus       120 qaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k-~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~  198 (450)
T COG0403         120 EALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTK-KKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD  198 (450)
T ss_pred             HHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhc-CcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc
Confidence            567788999999999998888888999988888888765422 33689999999999999999877654 8999988887


Q ss_pred             CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEeccc-ccCccccccCcccccEEEecccc
Q psy8850         120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ-AVGKIDINIQNYKVDLMSFSAHK  198 (397)
Q Consensus       120 ~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~-~~~~~~~~~~~~~~d~~~~s~~K  198 (397)
                           |+++++++...++..+++.+|++-.+...+++.+.+.+|++|+++++=.-. +.+.+ -....+++|+++++.+-
T Consensus       199 -----d~~~l~~~~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL-~pPGe~GADIvvG~~Qr  272 (450)
T COG0403         199 -----DLDDLESADDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLL-KPPGEFGADIVVGSAQR  272 (450)
T ss_pred             -----hhhhhhhccccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEEechhHhhcc-CCccccCCceEEecCcc
Confidence                 889999883347899999999755436777999999999999987765332 22222 23456699999999998


Q ss_pred             cc-----CCCCceEEEEecCCCCccccccccC------C-----------ccccccCCCCchhH---HHHHHHHHHHH--
Q psy8850         199 IY-----GPKGIGALYIRRNPRTRIEAQIHGG------G-----------HEYGLRSGTLATHQ---IVGMGEAFRLA--  251 (397)
Q Consensus       199 ~~-----g~~g~g~~~~~~~~~~~~~~~~~~~------~-----------~~~~~~~~~~~~~~---~~~l~~al~~~--  251 (397)
                      ++     |++-+|++.++++....+.-.+.|-      .           +..+..-.|+|...   +.++.+++-..  
T Consensus       273 fGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~h  352 (450)
T COG0403         273 FGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYH  352 (450)
T ss_pred             cCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHh
Confidence            63     3333789999877655544333321      1           11223345666542   34444444322  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHh-C-CcEecccCccCCCCCCh
Q psy8850         252 -RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-K-DIAVSSGSACTSASLEP  328 (397)
Q Consensus       252 -~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~i~~~~g~~~~~~~~~~  328 (397)
                       .+|+.++.++..++..++.++|++.-.++.+...   .+..-+.+.++......+..+. . |+.+..-          
T Consensus       353 Gp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~---~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~----------  419 (450)
T COG0403         353 GPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD---HFFDTFTVRVPEEVAEALLAAAIAGGINLRRV----------  419 (450)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc---cceeeEEEecchhHHHHHHHHHHhcCCceeee----------
Confidence             4589999999999999999999971135666654   1123344555432233333332 2 4444321          


Q ss_pred             hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         329 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       329 ~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                                   ....+-+++...+++++|+.+++.+...
T Consensus       420 -------------~~~~~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         420 -------------DADTVLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             -------------cCCceEEEeecccCHHHHHHHHHHHhhh
Confidence                         1246788999889999999999988764

>KOG2040|consensus

Probab=99.68  E-value=2.3e-14  Score=133.07  Aligned_cols=313  Identities=13%  Similarity=0.168  Sum_probs=210.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeC-ChhHHHHHHHHHhHhhh----ccCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          39 AEKAIEKARNEVAQLIYADPREIIWTS-GATESNNLAIKGAAHFY----KKRGKHIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        39 ~~~~~~~~~~~la~~~~~~~~~i~~~~-g~t~a~~~~l~~l~~~~----~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      ..+.+.++++.|++..|.+  .+-|.+ +|.++-.+-+..+....    ...+..++++...|+++-.+++++   |.+|
T Consensus       580 Y~~lf~~Le~~Lc~iTG~D--~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Ma---gmkv  654 (1001)
T KOG2040|consen  580 YQQLFTELEKDLCEITGFD--SFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMA---GMKV  654 (1001)
T ss_pred             HHHHHHHHHHHhheeeccc--ceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhc---CCEE
Confidence            3568889999999999987  455544 44444444444333211    233478999999999999999998   9999


Q ss_pred             EEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCccccc-ccHHHHHHHHHhcCcEEEEecccccCcccc-ccCccc
Q psy8850         114 TYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVI-QPILEIGELCRSKGVIFHCDAAQAVGKIDI-NIQNYK  188 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~-~~l~~i~~l~~~~gi~livD~a~~~~~~~~-~~~~~~  188 (397)
                      +.|.++.+|.+|..+|+++.++   +-.++.+++|++. |+. ..++++.++.|+||.-|..|++..-..+.+ ...+++
T Consensus       655 vpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST~-GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~G  733 (1001)
T KOG2040|consen  655 VPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPSTH-GVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIG  733 (1001)
T ss_pred             EEeeccCCCCccHHHHHHHHHHhhhhhheeEEeccccc-ccccccHHHHHHHHHhcCCEEEecCCCccceecccCCcccc
Confidence            9999999999999999998765   5678889988766 554 459999999999999999999976333221 234558


Q ss_pred             ccEEEecccc-cc-----CCCCceEEEEecCCCCccc--cccccCCccc----cccCCCCc-hhHHHH-HHHHHHHHH-H
Q psy8850         189 VDLMSFSAHK-IY-----GPKGIGALYIRRNPRTRIE--AQIHGGGHEY----GLRSGTLA-THQIVG-MGEAFRLAR-I  253 (397)
Q Consensus       189 ~d~~~~s~~K-~~-----g~~g~g~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~-~~~~~~-l~~al~~~~-~  253 (397)
                      .|+.-..+|| ++     |++|+|-+.+++.+...+.  ++...+....    +.-+..|- ...++. .++.++.+- .
T Consensus       734 aDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~  813 (1001)
T KOG2040|consen  734 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSG  813 (1001)
T ss_pred             ccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhccc
Confidence            9999999999 62     4556888888877665542  2221111111    11111110 111222 234555543 3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec------CCChHHHHHHhC--CcEecccCccCCCC
Q psy8850         254 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN------FIEGESLLMAIK--DIAVSSGSACTSAS  325 (397)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~--~i~~~~g~~~~~~~  325 (397)
                      |++.-.+...-++.++.++|+.+++ +-..+. .....+-+.+..+      ++++.+++++|.  |+....-++..   
T Consensus       814 GL~~as~~AiLNaNYMakRLe~hYk-il~~~~-~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV---  888 (1001)
T KOG2040|consen  814 GLKDASKIAILNANYMAKRLESHYK-ILFRGE-NGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPV---  888 (1001)
T ss_pred             ccchhhHHHhhhhHHHHHHHhhccc-eeEecC-CcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCcccccc---
Confidence            5677777777889999999988333 222232 2233444455443      366778888887  33222221111   


Q ss_pred             CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8850         326 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPL  379 (397)
Q Consensus       326 ~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~  379 (397)
                                       .+.+-|-++...+.+++|+++++|-.+-++++++..+
T Consensus       889 -----------------~gtLMIEPTESE~k~ElDRfcdAliSIreEI~~ie~G  925 (1001)
T KOG2040|consen  889 -----------------AGTLMIEPTESEDKAELDRFCDALISIREEIAQIEEG  925 (1001)
T ss_pred             -----------------CCceEeccCccccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                             2778888888889999999999999999999987766

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.67  E-value=2.1e-14  Score=136.27  Aligned_cols=248  Identities=16%  Similarity=0.127  Sum_probs=143.1

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|.|.+++++++....      .+  . .......++.+.|++++.. .+.+.|++||++|++.+++.. +.++++
T Consensus        62 lGh~~p~v~~Ai~~q~~~~~------~~--~-~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklA-r~~tgr  130 (431)
T PRK06209         62 LGHAYPPVVEAVREALQDGC------NF--T-RPSAIELDAAESFLELIDG-ADMVKFCKNGSDATSAAVRLA-RAYTGR  130 (431)
T ss_pred             cCCCCHHHHHHHHHHHHhCc------CC--C-CCCHHHHHHHHHHHHhCCc-cceEEEecCHHHHHHHHHHHH-HHHhCC
Confidence            34568999999999998632      11  1 1122344677788887742 247999999999999999954 444343


Q ss_pred             CCEEEEc-CCCChhhHHHHHH--HhhCCc------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCcccccc
Q psy8850          86 GKHIITV-QTEHKSVLDSIRK--LENDGF------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        86 g~~vl~~-~~~~~s~~~~~~~--~~~~g~------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~  153 (397)
                       .+|+.. ...|++.......  ....+.      .+..++     .-|++++++++.   +++.+|+++......+..-
T Consensus       131 -~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~  204 (431)
T PRK06209        131 -DLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR-----YNDIASLEALFEDHPGRIACVILEPATADEPQDG  204 (431)
T ss_pred             -CeEEEeccCccccccccccccCCCCCCCChhHhccccccC-----CCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHH
Confidence             456554 2333321110000  000011      011112     227899998885   3567888887654322222


Q ss_pred             cHHHHHHHHHhcCcEEEEecccccCccc---cc-cCcccccEEEecccc-ccCCCCceEEEEecCCCCc--cccccccCC
Q psy8850         154 PILEIGELCRSKGVIFHCDAAQAVGKID---IN-IQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR--IEAQIHGGG  226 (397)
Q Consensus       154 ~l~~i~~l~~~~gi~livD~a~~~~~~~---~~-~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~--~~~~~~~~~  226 (397)
                      .+++|.++|++||+++|+|+++......   .. .....+|+++++  | +.|+..+|++.++++....  +...-....
T Consensus       205 ~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PDi~t~g--K~lggG~p~~av~~~~~i~~~~~~~~~~~~~~  282 (431)
T PRK06209        205 FLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPDLSCFG--KALGNGFAVSALAGKREYMELGGLEHTDRERV  282 (431)
T ss_pred             HHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcceeeeh--hhhcCCcccEEEEEHHHHHhhhcccccCCCCc
Confidence            3899999999999999999998521111   01 112357887766  9 6554446888888665443  110000000


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME  275 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~  275 (397)
                      ... ....++|...+++..++++.+.+.  .+.++..++.+++++.|++
T Consensus       283 ~~~-~~T~~~np~~~aaa~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~  328 (431)
T PRK06209        283 FLL-STTHGAETHALAAAIATMAIYRDE--DVIERLHEQGAKLAAGVNE  328 (431)
T ss_pred             eee-ccCCCCCHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHH
Confidence            000 111234556677777888888652  4566666667777776654

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.65  E-value=2.5e-14  Score=131.44  Aligned_cols=252  Identities=18%  Similarity=0.203  Sum_probs=156.2

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh-----
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH-----   80 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~-----   80 (397)
                      .+..+|.+.+++++++....- ...     .....+...++.+.|.+.++-..+.+.|++||++|++.+++....     
T Consensus        30 lGh~~p~i~~ai~~~~~~~~~-~~~-----~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~  103 (339)
T PF00202_consen   30 LGHNHPEIAEAIAEQANKLNY-VSF-----SGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKR  103 (339)
T ss_dssp             T-BT-HHHHHHHHHHHHHCSS-CST-----TTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCccccchhHHHHhhhccc-ccc-----cceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccc
Confidence            445689999999998876321 110     112234567788888898854445799999999999999997651     


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhh-----C-----CcEEEEeccCCCCC-----CCHHHHHH----HhcCCceEEE
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLEN-----D-----GFRVTYLKPKNNGL-----ITLSQLEE----KICSDTILVS  141 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~-----~-----g~~v~~v~~~~~~~-----~d~~~l~~----~i~~~~~~v~  141 (397)
                      .. ..+.+|+....+|++.......+..     .     ...+..+|.++...     -..+.+++    ...+++.+|+
T Consensus       104 ~~-~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi  182 (339)
T PF00202_consen  104 AY-TGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVI  182 (339)
T ss_dssp             HH-HTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred             cc-cCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEE
Confidence            22 3446788777777665433333210     0     12345666652110     00111222    2245688999


Q ss_pred             EecccCccccccc----HHHHHHHHHhcCcEEEEecccccC-cc----ccccCcccccEEEecccc-ccCCCCceEEEEe
Q psy8850         142 VMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVG-KI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIR  211 (397)
Q Consensus       142 ~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~-~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~  211 (397)
                      ++.++...|...+    +++|.++|++||+++|+|+++... ..    ..+...+.+|+++++  | +.|+..+|.++++
T Consensus       183 vEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG~p~sav~~~  260 (339)
T PF00202_consen  183 VEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGGLPISAVLGS  260 (339)
T ss_dssp             EESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTTSSEEEEEEE
T ss_pred             EeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccc--cchhhhhhccccccc
Confidence            9999988887665    689999999999999999998732 21    122234478999998  9 6665678999999


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME  275 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~  275 (397)
                      ++....+.+...+      .+.+ -+...+++..++++.+.+  .++.++..++.++|.+.|++
T Consensus       261 ~~i~~~~~~~~~~------~T~~-g~p~~~aaa~~~l~~~~~--~~~~~~~~~~g~~l~~~L~~  315 (339)
T PF00202_consen  261 EEIMEAFQPGSHG------STFG-GNPLSCAAALATLEILEE--EDLLERVRELGERLREGLRE  315 (339)
T ss_dssp             HHHHTTSCTTSST------CTTT-T-HHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHH
T ss_pred             chhhccccccccc------cccc-cchHhhhhhhhHHHhhcc--HHHHHHHHHHHHHHHHHHHH
Confidence            8765555333221      1222 234455555578887766  33455556666666665554

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.65  E-value=7.4e-14  Score=127.72  Aligned_cols=329  Identities=16%  Similarity=0.132  Sum_probs=198.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .|+++..++|..      ++.   .|    ...+...++++..++++|.+  .+++|.++..+..++...++.   .+|+
T Consensus        54 apS~~m~aAM~~------GDD---~Y----~gdpSv~~Lee~vael~G~E--~alpthqGRgaE~Il~~~~~~---~~g~  115 (467)
T TIGR02617        54 AVTQSMQAAMMR------GDE---AY----SGSRSYYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIK---KREQ  115 (467)
T ss_pred             CCCHHHHHHHHc------CCc---cc----ccCchHHHHHHHHHHHhCCc--eEEECCCCchHHHHHHHhhcc---cccc
Confidence            478888888875      111   11    22335678999999999988  688999999999988888872   2566


Q ss_pred             EEEEcC-------CCChh-hHHHHHHHhhCCcEEEEecc----------CCCCCCCHHHHHHHhcC----CceEEEEecc
Q psy8850          88 HIITVQ-------TEHKS-VLDSIRKLENDGFRVTYLKP----------KNNGLITLSQLEEKICS----DTILVSVMLV  145 (397)
Q Consensus        88 ~vl~~~-------~~~~s-~~~~~~~~~~~g~~v~~v~~----------~~~~~~d~~~l~~~i~~----~~~~v~~~~~  145 (397)
                      ++.+..       ..|.. ........   |..++.++.          +..|.+|+++++++|.+    +...+..+-.
T Consensus       116 e~g~~~~~~~v~hn~~fett~g~a~l~---G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt  192 (467)
T TIGR02617       116 EKGLDRSKMVAFSNYFFDTTQGHSQIN---GCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATIT  192 (467)
T ss_pred             cccccccccccceEEEEecchHHHHHc---CceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEE
Confidence            555333       22222 33333444   777776532          23588999999999974    3344433333


Q ss_pred             cCc-cccccc---HHHHHHHHHhcCcEEEEeccccc-----------CccccccC------cccccEEEecccc-ccCCC
Q psy8850         146 NNE-IGVIQP---ILEIGELCRSKGVIFHCDAAQAV-----------GKIDINIQ------NYKVDLMSFSAHK-IYGPK  203 (397)
Q Consensus       146 ~~~-tG~~~~---l~~i~~l~~~~gi~livD~a~~~-----------~~~~~~~~------~~~~d~~~~s~~K-~~g~~  203 (397)
                      +|. .|.+.|   ++++.++|++||+++++|++--+           +....+..      .-.+|.+++|++| ++.|.
T Consensus       193 ~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApv  272 (467)
T TIGR02617       193 CNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPM  272 (467)
T ss_pred             EecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcc
Confidence            343 577787   46788999999999999986321           11111111      1268999999999 77787


Q ss_pred             CceEEEEecCCC----CccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q psy8850         204 GIGALYIRRNPR----TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE  279 (397)
Q Consensus       204 g~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  279 (397)
                      | |++.++++..    .+.+....-  .....+.|+.+..-+-++...|+...+  ..+.+.-....++|.+.|.+  .|
T Consensus       273 G-g~Lag~d~~~~~l~~~~~~~~i~--~EGf~tYGGlagrd~ea~a~Gl~e~~~--~~yl~~ri~qv~yl~~~L~~--~G  345 (467)
T TIGR02617       273 G-GLLCFKDDSFFDVYTECRTLCVV--QEGFPTYGGLEGGAMERLAVGLYDGMN--LDWLAYRINQVQYLVNGLEE--IG  345 (467)
T ss_pred             c-ceEEecchhHHHHHHHHHhhccc--ccCCcCcCchhHHHHHHHHhhhhhccc--HHHHHHHHHHHHHHHHHHHh--CC
Confidence            6 8888887621    111211110  112234566666777777666665533  34445555567788888888  67


Q ss_pred             EEEeCCCCCCCCceEEEEe----cCC-----ChHHHHHHhC---CcE-ecccCccCCCCCChhhHHHhhCCCcccc--Cc
Q psy8850         280 IYINGDMNNRIPHNLNISF----NFI-----EGESLLMAIK---DIA-VSSGSACTSASLEPSYVLRALGCNDELA--HS  344 (397)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~l~---~i~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~--~~  344 (397)
                      +.+.. .+   ++.+.+..    +.+     ++..+...|-   ||. +.-|+.......+..         ....  -.
T Consensus       346 vpi~~-~G---ghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~---------~~~~~~~e  412 (467)
T TIGR02617       346 VVCQQ-AG---GHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTG---------KQLPCPAE  412 (467)
T ss_pred             CcEEe-cC---ccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCC---------ccCCCccc
Confidence            77665 33   33433321    222     2344444443   432 222322111000000         0111  26


Q ss_pred             eEEEeeC-CCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy8850         345 SIRFTIG-RFTTEKEIDFTIKLLKMKVKKLRELS  377 (397)
Q Consensus       345 ~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~~~~~  377 (397)
                      .+|+.++ -.-|.+.+|..+++|..+.++-..+.
T Consensus       413 l~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~i~  446 (467)
T TIGR02617       413 LLRLTIPRATYTQTHMDFIIEAFKHVKENAPNIK  446 (467)
T ss_pred             eeeeccccccccHhHHHHHHHHHHHHHhhhhhcC
Confidence            7999987 33579999999999998887665544

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.62  E-value=2.2e-16  Score=140.30  Aligned_cols=251  Identities=18%  Similarity=0.228  Sum_probs=53.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      +.++.++++.+++.+....+. |-...... +.. ......+++.++++.|++  ..+++++...|+.+++.++.     
T Consensus        14 GRs~l~~~a~~a~~~~a~~Y~-nLE~dl~~-G~R-g~R~~~v~~ll~~ltgAe--aA~VvNnnaAAv~L~l~~la-----   83 (367)
T PF03841_consen   14 GRSPLSEEAIEAVAEVASGYS-NLEYDLET-GKR-GSRYAHVEELLCELTGAE--AALVVNNNAAAVLLALNTLA-----   83 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccc-cccccccc-ccc-cccccccccccccccccc--cccccccccccccccccccc-----
Confidence            345778899999888766522 22110111 111 123566888899999987  56777888889999999886     


Q ss_pred             CCCEEEEcCCCChhhHHHHH---HHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCc--cccc--ccHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIR---KLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVI--QPILE  157 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~---~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~--tG~~--~~l~~  157 (397)
                      ++.+|+++..+-..+..+++   .+...|.+++.|...  +...+++++++|+++|.+++..|.+|.  .|+.  .++++
T Consensus        84 ~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt--N~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~e  161 (367)
T PF03841_consen   84 KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT--NRTHLSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLEE  161 (367)
T ss_dssp             -------------------------------------------------------------------------------H
T ss_pred             cccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccHHH
Confidence            56899999887665555433   344458888887754  445789999999999999988887776  3543  46899


Q ss_pred             HHHHHHhcCcEEEEeccccc-------Ccc-ccc---cCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccC
Q psy8850         158 IGELCRSKGVIFHCDAAQAV-------GKI-DIN---IQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~-------~~~-~~~---~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      +++++|+||+++++|...+.       |.. ..+   ....++|+++||+.| +.||. .|++++++++++.++..-.  
T Consensus       162 l~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk~lI~~lk~~pl--  238 (367)
T PF03841_consen  162 LAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKKELIEKLKKHPL--  238 (367)
T ss_dssp             HHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S--EEEEEEHHHHHHHHHHHH--
T ss_pred             HHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCHHHHHHHhhCCC--
Confidence            99999999999999988741       110 112   233489999999999 55554 7999999988887653211  


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHH------H------HHHHHHHHHHHHHHHHHHHhh
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARI------E------MKEELKRILFLQKRLYNGLME  275 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~------~------~~~~~~~~~~~~~~l~~~l~~  275 (397)
                           .+.-..+-..++++.++++.+.+      .      +....+.+++++++|...|..
T Consensus       239 -----~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~  295 (367)
T PF03841_consen  239 -----GRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKA  295 (367)
T ss_dssp             -----TTT-B--HHHHHHHHHHHHH-------------------------------------
T ss_pred             -----cceEeeCHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccc
Confidence                 11223445677888888876642      1      222345555556666666555

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.60  E-value=9e-14  Score=124.73  Aligned_cols=225  Identities=18%  Similarity=0.211  Sum_probs=152.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      +.+..++++++++.+.+..... -.. .-..+ ........+.+.++...++  +.+.++++.+.|+.+++.++.    .
T Consensus        35 G~s~~~~e~iea~~~~~~~~v~-Le~-~l~~g-~~~~R~~~~~~~~~~~~~a--ea~~ivnnn~aAVll~~~al~----~  105 (395)
T COG1921          35 GRSLYSPEAIEAMKEAMRAPVE-LET-DLKTG-KRGARLTELAELLCGLTGA--EAAAIVNNNAAAVLLTLNALA----E  105 (395)
T ss_pred             CCccCCHHHHHHHHHHhcccce-eee-ecccc-hhhHHHHHHHHHHhcccch--hheeeECCcHHHHHHHHhhhc----c
Confidence            3456688999999888876332 111 11111 1112223344444444443  368899999999999999887    4


Q ss_pred             CCCEEEEcC-----CCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccc--ccHHH
Q psy8850          85 RGKHIITVQ-----TEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI--QPILE  157 (397)
Q Consensus        85 ~g~~vl~~~-----~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~--~~l~~  157 (397)
                       +.+|+++.     +.++.....+...   |.+++.+...  +.....+++.+|++++++++-.+.+|. |..  .+.++
T Consensus       106 -~~EvVis~g~lV~gg~~~v~d~~~~a---G~~l~EvG~t--n~t~~~d~~~AIne~ta~llkV~s~~~-~f~~~l~~~~  178 (395)
T COG1921         106 -GKEVVVSRGELVEGGAFRVPDIIRLA---GAKLVEVGTT--NRTHLKDYELAINENTALLLKVHSSNY-GFTGMLSEEE  178 (395)
T ss_pred             -CCeEEEEccccccCCCCChhHHHHHc---CCEEEEeccc--CcCCHHHHHHHhccCCeeEEEEeeccc-cccccccHHH
Confidence             45565543     4566666666665   8998887644  456899999999999999877777665 543  56788


Q ss_pred             HHHHHHhcCcEEEEecccccCcc-ccc---cCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCcccccc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKI-DIN---IQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR  232 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~-~~~---~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (397)
                      ++++||++|+++++|.+.+.... ..+   .-..++|++++|+.| +.||. .|+++++++++++++....+    +.++
T Consensus       179 l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq-aGii~GkKelI~~lq~~~l~----Ralr  253 (395)
T COG1921         179 LVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ-AGIIVGKKELIEKLQSHPLK----RALR  253 (395)
T ss_pred             HHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc-cceEechHHHHHHHHhhhhh----hhhh
Confidence            99999999999999999874311 112   234489999999999 55565 79999999988776544322    2233


Q ss_pred             CCCCchhHHHHHHHHHHHHHH
Q psy8850         233 SGTLATHQIVGMGEAFRLARI  253 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~~~  253 (397)
                      .   ....++++.++++.+..
T Consensus       254 v---~K~tla~l~~aLe~y~~  271 (395)
T COG1921         254 V---DKETLAALEAALELYLQ  271 (395)
T ss_pred             c---CcHhHHHHHHHHHHHcC
Confidence            3   33567888888887753

>KOG0628|consensus

Probab=99.59  E-value=3.7e-12  Score=114.65  Aligned_cols=309  Identities=17%  Similarity=0.154  Sum_probs=200.2

Q ss_pred             HHHHHHHHHHHHHhCCCC---------CcEEEeCChhHHHHHHHHHhHhh----hc-----------cCCCEEEEcCCCC
Q psy8850          41 KAIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAAHF----YK-----------KRGKHIITVQTEH   96 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~---------~~i~~~~g~t~a~~~~l~~l~~~----~~-----------~~g~~vl~~~~~~   96 (397)
                      +..--.-++++++++.|.         .-.++..+++++...++.+....    ..           ..+-++..++.+|
T Consensus       113 ELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqah  192 (511)
T KOG0628|consen  113 ELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAH  192 (511)
T ss_pred             HHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCccc
Confidence            444445678888887642         23666677888877776654421    11           1134778899999


Q ss_pred             hhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC------ceEEEEecccCcccccccHHHHHHHHHhcCcEEE
Q psy8850          97 KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH  170 (397)
Q Consensus        97 ~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~li  170 (397)
                      .+...+....   |.+++.++.+++..++.+.|+++|.++      |-+++.+-..+.+....++.+|..+|+++|+|++
T Consensus       193 ssveka~~i~---~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLH  269 (511)
T KOG0628|consen  193 SSVEKACLIA---GVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLH  269 (511)
T ss_pred             chHHHhHhhc---ceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhhcCEEEE
Confidence            9998877666   899999999999899999999999763      4477777777777788889999999999999999


Q ss_pred             EecccccCcc-ccccCcc-----cccEEEecccc-ccCCCCceEEEEecCCCCc----cccccccC---CccccccCCCC
Q psy8850         171 CDAAQAVGKI-DINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRNPRTR----IEAQIHGG---GHEYGLRSGTL  236 (397)
Q Consensus       171 vD~a~~~~~~-~~~~~~~-----~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~  236 (397)
                      ||++|+.... ...++.+     .+|.+.+..|| ++.--.+..+++++.....    ..+.....   .....++....
T Consensus       270 VDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrhwqi  349 (511)
T KOG0628|consen  270 VDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRHWQI  349 (511)
T ss_pred             eehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCCCcccccc
Confidence            9999984432 2222211     57999999999 4544457888887652110    11111000   00011111111


Q ss_pred             ch-hHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC--hHHHHHHh
Q psy8850         237 AT-HQI--VGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE--GESLLMAI  310 (397)
Q Consensus       237 ~~-~~~--~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l  310 (397)
                      +. ..+  +.++..++.+ .+.++++.++..++++.+...+.+ -+.+++..+.-   -+++.|+.++.+  .+.+..++
T Consensus       350 pl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~-d~~FE~~~~~~---lgLvcFRlk~~N~~ne~Ll~~i  425 (511)
T KOG0628|consen  350 PLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRA-DPRFEIVNKRI---LGLVCFRLKGDNEINEALLNRL  425 (511)
T ss_pred             ccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeecccc---cceeEEeecCCcHHHHHHHHHH
Confidence            11 111  2233344332 345777888888888888888877 67777776533   566677776432  34555555


Q ss_pred             C---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         311 K---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       311 ~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      .   .+.+.+...                    .+.-.||+++. ..++.++|++.-+.|.+....+.+.
T Consensus       426 n~~g~i~l~~~~l--------------------~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~  475 (511)
T KOG0628|consen  426 NSSGRIHLVPASL--------------------HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA  475 (511)
T ss_pred             HhcCcEEEEEeee--------------------cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence            4   354444321                    11246999987 4478999999999999998886554

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.55  E-value=1.7e-13  Score=122.97  Aligned_cols=301  Identities=16%  Similarity=0.122  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHHHhCCCC-CcEEEeCChh-HHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC
Q psy8850          42 AIEKARNEVAQLIYADP-REIIWTSGAT-ESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK  119 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~-~~i~~~~g~t-~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~  119 (397)
                      ....+-..+-+..|++. ...++++-+| ..+.+++.++. . ....+.|+++...|.+.+.++..+   |++++.||..
T Consensus        57 ltn~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~-~-r~~a~~Viw~ridqkSc~kai~~A---Gl~~~vV~~~  131 (389)
T PF05889_consen   57 LTNSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALR-M-RPKAKYVIWPRIDQKSCFKAIERA---GLEPVVVENV  131 (389)
T ss_dssp             HHHHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHH-H-HCT--EEEEEEEETHHHHHHHHHT---T-EEEEE-EE
T ss_pred             HHHHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHh-c-ccCCceEEEeeccccchHHHHHhc---CCeEEEeecc
Confidence            33445555566678752 3467777776 35666677665 2 256799999999999999999988   9999999863


Q ss_pred             ---CCCCCCHHHHHHHhcC---CceEEEEecccCccccccc-HHHHHHHHHhcCcEEEEecccccCcccc------ccCc
Q psy8850         120 ---NNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP-ILEIGELCRSKGVIFHCDAAQAVGKIDI------NIQN  186 (397)
Q Consensus       120 ---~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~-l~~i~~l~~~~gi~livD~a~~~~~~~~------~~~~  186 (397)
                         +.-..|.+.+|+++++   +..+.++++.+...+...| +++|+++|++|||+.++.+||+..+...      ....
T Consensus       132 ~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~  211 (389)
T PF05889_consen  132 LEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRV  211 (389)
T ss_dssp             EETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHH
T ss_pred             CCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhc
Confidence               2224578888888864   4567788888877888887 9999999999999999999999744211      0111


Q ss_pred             ccccEEEecccc-ccCCCCceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         187 YKVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILF  264 (397)
Q Consensus       187 ~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~  264 (397)
                      -..|+++-|.-| +..|.|.+.+...+. .+..+...+.|.      -+.+   +.+-.+...+.+...++........+
T Consensus       212 GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGR------as~s---p~ld~~itLl~LG~~g~~~ll~~r~~  282 (389)
T PF05889_consen  212 GRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGR------ASAS---PSLDLFITLLSLGCTGYGALLKERKA  282 (389)
T ss_dssp             STCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSH------BTSH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhh------hhcc---cchHHHHHHHHHhhhHHHHHHHHHHH
Confidence            146777888888 777777555554421 112222222221      0111   11222222233334455555555555


Q ss_pred             HHHHHHHHHhhhc---CcEEEeCCCCCCCCceEEEEecCCC------hHHHHHHhC-----CcE-ecccCccCCCCCChh
Q psy8850         265 LQKRLYNGLMESI---EEIYINGDMNNRIPHNLNISFNFIE------GESLLMAIK-----DIA-VSSGSACTSASLEPS  329 (397)
Q Consensus       265 ~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~-----~i~-~~~g~~~~~~~~~~~  329 (397)
                      ...++.++|++ +   -+-.+..-+  ..+..+.+..+...      ...+...|.     |.. +.++.....      
T Consensus       283 ~f~~l~erl~~-~aee~~e~ll~~p--~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~t------  353 (389)
T PF05889_consen  283 SFPYLKERLKK-WAEEVGERLLETP--RNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQT------  353 (389)
T ss_dssp             HHHHHHHHHHH-HHHHTTEEBSSST--T-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEE------
T ss_pred             HHHHHHHHHHH-HHHHhhhhhcCCC--CCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCccc------
Confidence            55555555443 2   233333322  22455566665322      246666665     333 222111000      


Q ss_pred             hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       330 ~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                           ... ..+...++-+.....++.+|||.++++|+++++
T Consensus       354 -----sh~-~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  354 -----SHS-SNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             -----TTS-S--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred             -----ccC-CCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence                 011 123348899988777999999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.54  E-value=3.1e-12  Score=112.67  Aligned_cols=173  Identities=18%  Similarity=0.178  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEe--CChhHHHHHHHHHhHhhhccCCCEEEE-cCCCChhhHHHHHH-------HhhCC
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWT--SGATESNNLAIKGAAHFYKKRGKHIIT-VQTEHKSVLDSIRK-------LENDG  110 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~--~g~t~a~~~~l~~l~~~~~~~g~~vl~-~~~~~~s~~~~~~~-------~~~~g  110 (397)
                      ...+.+++-.++.|+++.. ++=.  -|||.|+.+++.+++    +|||+++. +-.-|.+....+-.       +...|
T Consensus        54 ~GRd~le~iyA~vfgaE~A-LVRpq~vSGTHAi~~~Lfg~L----rpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~G  128 (403)
T PF06838_consen   54 IGRDKLERIYADVFGAEDA-LVRPQFVSGTHAIALALFGVL----RPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFG  128 (403)
T ss_dssp             HHHHHHHHHHHHHCT-SEE-EEETTS-SHHHHHHHHHHHH------TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT
T ss_pred             ccHHHHHHHHHHHhCchhh-hhcccccchHHHHHHHHHhcC----CCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhC
Confidence            4677788889999998731 1111  289999999999999    79999985 44446666655532       22348


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcc----cccccHHHHHHHHHhc--CcEEEEecccccCcccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI----GVIQPILEIGELCRSK--GVIFHCDAAQAVGKIDINI  184 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t----G~~~~l~~i~~l~~~~--gi~livD~a~~~~~~~~~~  184 (397)
                      ++...+++.++|.+|.+.+++++++++++|++.---...    =.+..++++++++|+.  ++.++||++|+-.......
T Consensus       129 i~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP  208 (403)
T PF06838_consen  129 IKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEP  208 (403)
T ss_dssp             -EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-G
T ss_pred             ceeEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCc
Confidence            899999999999999999999999999999887442111    1222355566666654  8999999999966555555


Q ss_pred             CcccccEEEecccc-ccC---CCCceEEEEecCCCCccc
Q psy8850         185 QNYKVDLMSFSAHK-IYG---PKGIGALYIRRNPRTRIE  219 (397)
Q Consensus       185 ~~~~~d~~~~s~~K-~~g---~~g~g~~~~~~~~~~~~~  219 (397)
                      ...++|++.+|+=| .+|   |. .|++..++++.+...
T Consensus       209 ~~vGADl~aGSLIKNpGGgiApt-GGYIaGr~~lVe~~a  246 (403)
T PF06838_consen  209 TEVGADLMAGSLIKNPGGGIAPT-GGYIAGRKDLVERAA  246 (403)
T ss_dssp             GGGT-SEEEEETTSGGGTTT-SS--EEEEESHHHHHHHH
T ss_pred             cccchhheeccceeCCCCCccCc-CCEEechHHHHHHHH
Confidence            56699999999999 544   44 499999988776653

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>KOG2790|consensus

Probab=99.53  E-value=4.7e-12  Score=106.87  Aligned_cols=334  Identities=16%  Similarity=0.120  Sum_probs=218.7

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccCCCCC--CCcchhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCChhHHHHHHHHHhH
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQFGNPAS--RNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--i~~~~g~t~a~~~~l~~l~   79 (397)
                      +++..+|++|...+++-+..+.+-..+  .....+-.+..++.+.+..+++++++|...  +++..|||.-..++...+.
T Consensus        13 aGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~   92 (370)
T KOG2790|consen   13 AGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLI   92 (370)
T ss_pred             CCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhh
Confidence            445567888888888777664332211  012223455678999999999999998653  5556677776666666555


Q ss_pred             h-hhccCCCEEEEcCCCChhhHHHHHHHhhCCcE-EEEeccCC-C-C-CCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850          80 H-FYKKRGKHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPKN-N-G-LITLSQLEEKICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        80 ~-~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~-v~~v~~~~-~-~-~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                      . ...+.-|-|++..++-.    +++.+++.|.. .+..+..+ + | -+|.+.++  .+++.+.++++...+.-|+-.+
T Consensus        93 glK~g~~AdYiVTGsWS~K----A~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~--~~~da~yvyyCaNETVHGVEf~  166 (370)
T KOG2790|consen   93 GLKHGRCADYVVTGSWSAK----AAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWE--LNPDASYVYYCANETVHGVEFD  166 (370)
T ss_pred             ccccCCccceEEeccccHH----HHHHHHhhCCceEEeccccccccCcCCChhhcc--cCCCccEEEEecCceeeceecC
Confidence            3 11123467787776433    33444444543 33333322 2 2 23444443  3455678888888777787655


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccc---cccccCCc--cc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIE---AQIHGGGH--EY  229 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~---~~~~~~~~--~~  229 (397)
                      .-.   +-.-+|..++.|-.+-+-+.++|+.  ..++++...+|..|+.|.-+++++++++....   |...+...  ..
T Consensus       167 ~~P---~~~~~~~vlVaDmSSnflSrpvDvs--k~gvi~aGAQKN~G~aG~Tvvivr~dllg~~~~~tP~v~dyk~~~~N  241 (370)
T KOG2790|consen  167 FIP---VNDPKGAVLVADMSSNFLSRPVDVS--KFGVIFAGAQKNVGPAGVTVVIVRKDLLGNALDITPSVLDYKIMDKN  241 (370)
T ss_pred             CCC---CCCCCCceEEEecccchhcCCccch--hcceEEeccccccCccccEEEEEehhhhcccccCCccccceeeeccc
Confidence            322   2234689999999988888899988  56789999999999999999999998776643   33333211  12


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC-CCCCCCCceEEEEecCCC---h
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFNFIE---G  303 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~  303 (397)
                      ....+|++..++..+.-.++++.+  |+..+.+...+..+.+++.|.+ ..++..-. ++..+  ..+++.|+-.+   .
T Consensus       242 nSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~-s~gfy~cpVe~~~R--S~MNV~Fri~~d~Le  318 (370)
T KOG2790|consen  242 NSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDN-SNGFYRCPVEPSVR--SRMNVPFRIEKDELE  318 (370)
T ss_pred             cccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-cCCeEEcccchhhh--hhcccceeecchHHH
Confidence            334678899999999999999876  5888889999999999999999 66765443 32222  34455554211   1


Q ss_pred             HHHHHH-hC-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMA-IK-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       304 ~~~~~~-l~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .++... .+ +.                     .++.+..+-+.||-|+...++.+++.++++.|+++.+.
T Consensus       319 ~eFLkeA~~~~m---------------------v~LKGhRSVGGiRASlYNAisv~~~q~L~~~m~~F~k~  368 (370)
T KOG2790|consen  319 AEFLKEAAKEHM---------------------VQLKGHRSVGGIRASLYNAISVEEVQKLAAFMKEFQKK  368 (370)
T ss_pred             HHHHHHHHHhhh---------------------hccccccccccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence            222222 21 22                     22233344488999999999999999999999988764

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.52  E-value=1.5e-11  Score=122.78  Aligned_cols=285  Identities=12%  Similarity=0.109  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhC-CcEEEEec
Q psy8850          39 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLK  117 (397)
Q Consensus        39 ~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g~~v~~v~  117 (397)
                      .-+.+.+++..++++.|.+..+--+-.++|.+-+.++++... ..+++.+|++++..||.+...++..... |++++.  
T Consensus       122 ~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~-~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~--  198 (954)
T PRK12566        122 RLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRV-AKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV--  198 (954)
T ss_pred             HHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHH-hhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE--
Confidence            346778899999999999977777888988877766665432 1123578999999999999888876554 888774  


Q ss_pred             cCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccc--cCccccccCcccccEEEec
Q psy8850         118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA--VGKIDINIQNYKVDLMSFS  195 (397)
Q Consensus       118 ~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~--~~~~~~~~~~~~~d~~~~s  195 (397)
                               +++++++.+++..|++.+|+ -.|.+.++++|.+++|++|++++ +.+.-  .+.+ -...++++|+++++
T Consensus       199 ---------~~~~~~~~~~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~ll-~~Pge~GADI~vG~  266 (954)
T PRK12566        199 ---------DAVDNLAAHAVFGALLQYPD-THGEIRDLRPLIDQLHGQQALAC-VAADLLSLLVL-TPPGELGADVVLGS  266 (954)
T ss_pred             ---------cchhhcCCCCEEEEEEECCC-CceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhCC-CChhhcCCcEEeeC
Confidence                     33455566678888898885 45888999999999999999866 43332  2222 23456699999998


Q ss_pred             cccc-----cCCCCceEEEEecCCCCcccccccc------CC-----------ccccccCCCCchh---HHHHHHHHHHH
Q psy8850         196 AHKI-----YGPKGIGALYIRRNPRTRIEAQIHG------GG-----------HEYGLRSGTLATH---QIVGMGEAFRL  250 (397)
Q Consensus       196 ~~K~-----~g~~g~g~~~~~~~~~~~~~~~~~~------~~-----------~~~~~~~~~~~~~---~~~~l~~al~~  250 (397)
                      .+-+     +|++..|++.++++....+.-.+.|      |.           +..+.+-.|.|..   .++++.+++-.
T Consensus       267 ~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~  346 (954)
T PRK12566        267 TQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYA  346 (954)
T ss_pred             CCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            8764     4444589999987655554433332      11           1123345566654   34444444443


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCC
Q psy8850         251 A---RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSAS  325 (397)
Q Consensus       251 ~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~  325 (397)
                      .   .+|++++.+++..++.+|.+.|.+  .|+.+...   .+..-+.+.+. ....++.....  ++.++.-       
T Consensus       347 ~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~--~g~~~~~~---~fF~~~~v~~~-~~~~~~~~~a~~~~~n~r~~-------  413 (954)
T PRK12566        347 VYHGPEGLKRIAQRVHRLTAILAAGLEA--KGIKRLNR---HFFDTLTLEVG-GAQAAIIESAEAARINLRIL-------  413 (954)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHHh--cCCccccC---CccceEEEEcc-CCHHHHHHHHHHCCCeeEEe-------
Confidence            2   457999999999999999999998  78776644   12233444542 13444443332  5555421       


Q ss_pred             CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         326 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       326 ~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                                      ..+.+.||+...++.+|++.+++++.
T Consensus       414 ----------------~~~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        414 ----------------GRGRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             ----------------CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence                            12678999999999999999999984

>KOG1403|consensus

Probab=99.42  E-value=4.1e-11  Score=102.12  Aligned_cols=329  Identities=16%  Similarity=0.160  Sum_probs=194.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHH-HHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKA-RNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      -.+..+|+|+++....+.....|        .+-....+.++ +...+.+-+.+  .++|++||++|++++++ +.+.++
T Consensus        58 Hvghchp~VV~A~~kQmat~~tN--------~RFlhd~lv~cA~~l~stlPeLs--vc~F~NSGSEANDLALR-LAR~ft  126 (452)
T KOG1403|consen   58 HVGHCHPEVVRAGAKQMATISTN--------NRFLHDELVQCARTLTSTLPELS--VCFFVNSGSEANDLALR-LARNFT  126 (452)
T ss_pred             hcccCCHHHHHHHHHHHhHhccc--------chhhHHHHHHHHHHHhhcCCCce--EEEEecCCchhhHHHHH-HHHhhc
Confidence            34567899999998888763322        11222333443 33333333333  69999999999999999 455666


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhC----C---cE---EEEeccCCC--C-------------CCCHHHHHHHhc----
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLEND----G---FR---VTYLKPKNN--G-------------LITLSQLEEKIC----  134 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~----g---~~---v~~v~~~~~--~-------------~~d~~~l~~~i~----  134 (397)
                      +..|.|.+ +..|+++......+..+    |   .+   ++.-|+.+.  |             ..=.+.+++.+.    
T Consensus       127 khqDvItl-dHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~  205 (452)
T KOG1403|consen  127 KHQDVITL-DHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLA  205 (452)
T ss_pred             ccCceEEE-echhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHh
Confidence            77666655 45555555443332221    1   11   222344321  1             111233444443    


Q ss_pred             --CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc-----ccccCcccccEEEecccc-ccC
Q psy8850         135 --SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI-----DINIQNYKVDLMSFSAHK-IYG  201 (397)
Q Consensus       135 --~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~-----~~~~~~~~~d~~~~s~~K-~~g  201 (397)
                        ....+++.++-++=.|.+.|    .+++++..|.+|...|.|+.+- +|.+     .+....+-+|+++..  | ++.
T Consensus       206 ~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmg--KpmGN  283 (452)
T KOG1403|consen  206 KGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMG--KPMGN  283 (452)
T ss_pred             cCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheec--ccCCC
Confidence              13456777777777888888    5789999999999999999985 3322     222333357888776  9 665


Q ss_pred             CCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEE
Q psy8850         202 PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY  281 (397)
Q Consensus       202 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  281 (397)
                      +...+.+...++..+    .+.+.+..+..+.|..+..-..++ +.++..++  +++.++..+..++|...|++.-....
T Consensus       284 GhPVa~VattkeIA~----Af~atgv~YFNTyGGnPVsCAv~l-aVm~v~e~--E~Lq~ha~~vG~~L~~lL~~~k~kh~  356 (452)
T KOG1403|consen  284 GHPVAAVATTKEIAQ----AFHATGVEYFNTYGGNPVSCAVGL-AVMRVCED--ENLQEHAQQVGEKLEVLLRRLKQKHE  356 (452)
T ss_pred             CCeeeEEeccHHHHH----HhccccceehhccCCCchhHHHHH-HHHHHHhh--hhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            666788887754433    333333444455666665555555 66776655  56677777788888777766212334


Q ss_pred             EeCCCCCCCCceEEEEec-C----C----ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850         282 INGDMNNRIPHNLNISFN-F----I----EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT  349 (397)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~-~----~----~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (397)
                      ++++-- ..+.++-+.+- +    .    .+..+..+|+   ++.+..-.                 .    ..+.+.|-
T Consensus       357 ~IGDvR-GvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDG-----------------P----h~NilKiK  414 (452)
T KOG1403|consen  357 CIGDVR-GVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADG-----------------P----HRNILKIK  414 (452)
T ss_pred             ceeccc-cceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCC-----------------C----CCceeecC
Confidence            444321 11222222221 1    1    1233444454   45554321                 1    13789998


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         350 IGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ++.+.++++.++++..|.+++..+.++
T Consensus       415 PPmCFneena~e~v~~ld~iLT~mee~  441 (452)
T KOG1403|consen  415 PPMCFNEENADEFVLGLDEILTVMEER  441 (452)
T ss_pred             CCcccChhhHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999998776654

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.36  E-value=6.5e-10  Score=97.27  Aligned_cols=304  Identities=17%  Similarity=0.174  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh-hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH-FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN  120 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~-~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~  120 (397)
                      ....+++...+.+|..  .++.|.-|-.|-+.+...+.. .-..+|.+.++.++.|..+..+-...  -|..++-++.++
T Consensus        80 s~~~L~~avkdifGfq--~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~--ng~~~~n~~~~e  155 (471)
T COG3033          80 SYYALADAVKDIFGFQ--YTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQI--NGATPRNVYVDE  155 (471)
T ss_pred             cHHHHHHHHHHhcCce--eeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHh--cCCccccccccc
Confidence            4567888889999975  677788777776666555543 12245666666666666665544332  266666665542


Q ss_pred             ----------CCCCCHHHHHHHhcC----CceEEEEecccCc-cccccc---HHHHHHHHHhcCcEEEEeccccc-----
Q psy8850         121 ----------NGLITLSQLEEKICS----DTILVSVMLVNNE-IGVIQP---ILEIGELCRSKGVIFHCDAAQAV-----  177 (397)
Q Consensus       121 ----------~~~~d~~~l~~~i~~----~~~~v~~~~~~~~-tG~~~~---l~~i~~l~~~~gi~livD~a~~~-----  177 (397)
                                .|.+|++.|+++|.+    +..+|+.+-.+|. .|...+   ++++.++|++|+|+++.|++-..     
T Consensus       156 a~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYF  235 (471)
T COG3033         156 AFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYF  235 (471)
T ss_pred             cccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhh
Confidence                      367899999999975    5667766544444 555555   67899999999999999987431     


Q ss_pred             -CccccccCcc-----------cccEEEecccc-ccCCCCceEEEEecCCC----Ccccc--ccccCCccccccCCCCch
Q psy8850         178 -GKIDINIQNY-----------KVDLMSFSAHK-IYGPKGIGALYIRRNPR----TRIEA--QIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       178 -~~~~~~~~~~-----------~~d~~~~s~~K-~~g~~g~g~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~  238 (397)
                       -.......++           .+|-.+.|.-| .+...| |++..+++-.    ..++.  ....|.    -..|+..-
T Consensus       236 Ik~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~~D~~~fDvy~~~~~~~V~~eG~----~tYGgl~G  310 (471)
T COG3033         236 IKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCFKDDSFFDVYEECRTLVVVQEGF----PTYGGLAG  310 (471)
T ss_pred             hhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEecCccHHHHHHHHHhheEeeccc----cccCcccc
Confidence             1111222221           58999999999 888886 9999988732    22221  111111    12344444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEE----ecCCC-----hHHHHHH
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS----FNFIE-----GESLLMA  309 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~  309 (397)
                      ..+.++...|....+  ..+.++.-+..++|.+.|++  .|+.+..+.+   ++.+.+.    ++.++     +..+.-.
T Consensus       311 rdmealAvGL~e~~~--~~yl~~Rv~Qv~YL~~~l~~--~GVpi~~paG---GHavfvda~~~lphip~eqFpaqala~e  383 (471)
T COG3033         311 RDMEALAVGLREGVN--FDYLAHRVAQVQYLADGLEE--AGVPIVQPAG---GHAVFVDAGKFLPHIPAEQFPAQALACE  383 (471)
T ss_pred             hhHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHh--cCCeeEecCC---CceEEeehhhhcCCCChhhCcHHHHHHH
Confidence            556666555554332  22334444456788888888  6887776655   3333333    23333     3344444


Q ss_pred             hC---CcEecccCccCCCCCChhhHHHhhCCCccc------cCceEEEeeC-CCCCHHHHHHHHHHHHHHHHHH
Q psy8850         310 IK---DIAVSSGSACTSASLEPSYVLRALGCNDEL------AHSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       310 l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      |-   ||....-..++.            |.+...      .-..+|+.++ ..-|.+.+|..++.++++.+.-
T Consensus       384 ly~e~GiRavElG~~~~------------~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~  445 (471)
T COG3033         384 LYKEAGIRAVELGSFSL------------GRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA  445 (471)
T ss_pred             HHHHhCeeeeeeeceec------------ccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhcc
Confidence            42   543332211211            111100      1157999987 3357899999999999887654

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.34  E-value=4.1e-11  Score=104.96  Aligned_cols=285  Identities=12%  Similarity=0.099  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHhC---C---CCCcEEEeCChhHHHHHHHHHhHhh--hccCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          42 AIEKARNEVAQLIY---A---DPREIIWTSGATESNNLAIKGAAHF--YKKRGKHIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        42 ~~~~~~~~la~~~~---~---~~~~i~~~~g~t~a~~~~l~~l~~~--~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      +..++++.|+++..   .   +.-.|++.+|+|+.+++++.+|...  ...+.-.|+...|.|+++......+.....+-
T Consensus        44 ~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w  123 (363)
T PF04864_consen   44 ISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKW  123 (363)
T ss_dssp             S-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEE
T ss_pred             ccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCccc
Confidence            44556666666654   2   2224999999999999999998754  33445789999999999987766553322222


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEE-EEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILV-SVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM  192 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v-~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~  192 (397)
                      ..-  ...       ..+. +.....| ++++|+||.|.+--     .+++.-+..+|.|-+|.++....-....+-|+.
T Consensus       124 ~Gd--a~~-------~~~~-~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiM  188 (363)
T PF04864_consen  124 AGD--ASN-------FKNS-DNPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWPHYTPITAPADHDIM  188 (363)
T ss_dssp             EEE--CCC-------GTT--S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SEE
T ss_pred             ccc--HHh-------hccC-CCCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeecccccccCCCCCCceE
Confidence            211  111       1110 0123444 89999999997521     134566778899999999886433333478999


Q ss_pred             EeccccccCCC--CceEEEEecCCCC-ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHH----------HHHHH
Q psy8850         193 SFSAHKIYGPK--GIGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE----------MKEEL  259 (397)
Q Consensus       193 ~~s~~K~~g~~--g~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~----------~~~~~  259 (397)
                      .|+++|+.|=.  .+|+.+++++... ++..++.-      ...|..-=.++.++ ..|+.+.++          ..--.
T Consensus       189 LFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~l------nTiGvS~dsQLRa~-kiLk~v~~~~~~~~~~~~~F~f~~  261 (363)
T PF04864_consen  189 LFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMEL------NTIGVSRDSQLRAL-KILKVVLDGYGTEKGTEDIFHFGY  261 (363)
T ss_dssp             EEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHH------HCSS--HHHHHHHH-HHHHHHHHHCCHHTTTTSHHHHHH
T ss_pred             EEEEecccCccccccceeeecCHHHHHHHHHHHHH------hcccCcHHHHHHHH-HHHHHHHhcccCCCCccchHHHHH
Confidence            99999977633  4899999876332 23222211      12222222333333 444444332          12234


Q ss_pred             HHHHHHHHHHHHHHhhhcCcEEEeCCCC----------CCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCC
Q psy8850         260 KRILFLQKRLYNGLMESIEEIYINGDMN----------NRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLE  327 (397)
Q Consensus       260 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~  327 (397)
                      +.++++-++|++.+.+ ...+.+...+.          ...+.+.++.....+..+-...|+  +|.-+.|..|..    
T Consensus       262 ~~M~~RW~~L~~~~~~-S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~~I~tr~G~~fga----  336 (363)
T PF04864_consen  262 STMRERWEKLRAAVSA-SKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREAKIITRSGVLFGA----  336 (363)
T ss_dssp             HHHHHHHHHHHHHHCC-SSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCTTEEEEEGGGGTS----
T ss_pred             HHHHHHHHHHHHHHHh-cCceecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHHhCCcccCCCCccCC----
Confidence            5666667778888776 44444332211          012455666655322233333343  898888876654    


Q ss_pred             hhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                                +    ..++|||+--  ++++.|.++++|..+
T Consensus       337 ----------~----~ryVRlSml~--~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  337 ----------D----SRYVRLSMLK--RDDDFDQLLERLSKL  362 (363)
T ss_dssp             ---------------TTEEEEESSS---HHHHHHHHHHHHCC
T ss_pred             ----------C----CCeEEEeccC--CHHHHHHHHHHHHhh
Confidence                      1    3899999974  899999999999754

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1412|consensus

Probab=99.30  E-value=5.7e-10  Score=95.71  Aligned_cols=292  Identities=15%  Similarity=0.135  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHHH-hCCC-----CCc--EEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCC-cE
Q psy8850          42 AIEKARNEVAQL-IYAD-----PRE--IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDG-FR  112 (397)
Q Consensus        42 ~~~~~~~~la~~-~~~~-----~~~--i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g-~~  112 (397)
                      .++.+++..+++ +|.+     .+.  -+-+-|||.|+......+..++.  ...|.+++|.+..+...++.+   | .+
T Consensus        75 Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~--~~~VY~SnPTW~nH~~if~~a---Gf~t  149 (410)
T KOG1412|consen   75 GLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYN--KNTVYVSNPTWENHHAIFEKA---GFTT  149 (410)
T ss_pred             CchhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcc--cceeEecCCchhHHHHHHHHc---CCce
Confidence            445555555554 3432     122  44456899999999887666553  467999999999999888877   7 45


Q ss_pred             EEEeccC--CCCCCCHHHHHHHhcCCc--eEE-EEecccCccccccc---HHHHHHHHHhcCcEEEEecccc-cCccccc
Q psy8850         113 VTYLKPK--NNGLITLSQLEEKICSDT--ILV-SVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQA-VGKIDIN  183 (397)
Q Consensus       113 v~~v~~~--~~~~~d~~~l~~~i~~~~--~~v-~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~-~~~~~~~  183 (397)
                      +..+++=  ++-.+|++.+-+.++..|  .++ +-...+||||.-..   +..|+++.++++...+.|.+|- +.+-.++
T Consensus       150 v~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~  229 (410)
T KOG1412|consen  150 VATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLD  229 (410)
T ss_pred             eeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCcc
Confidence            5566663  345789888888876543  233 33345899998544   5678888899999999998864 4444444


Q ss_pred             cCcc--------cc-cEEEeccccccCCCC--ceEEEE--e-cCCCCccccccccCCccccccCCCCchhHHHHH-----
Q psy8850         184 IQNY--------KV-DLMSFSAHKIYGPKG--IGALYI--R-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM-----  244 (397)
Q Consensus       184 ~~~~--------~~-d~~~~s~~K~~g~~g--~g~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----  244 (397)
                      -+.+        +. -+++.||.|.+|..+  .|-+.+  + +.....+...+.   ...+...+.|+..+..-.     
T Consensus       230 ~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~---lviR~~~SNPPAyGArIV~kvL~  306 (410)
T KOG1412|consen  230 ADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLT---LVIRSNWSNPPAYGARIVHKVLS  306 (410)
T ss_pred             ccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHH---HHHhhccCCCcchhhHHHHHHhc
Confidence            3333        22 478899999555332  444433  2 111111111110   001112222332222212     


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccC
Q psy8850         245 -GEAFRLARIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGS  319 (397)
Q Consensus       245 -~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~  319 (397)
                       .+..+.+...+..+..++++++..|++.|.. +  ||.-   +.-....+  +|++-+.++.++..-..  .|.+.+. 
T Consensus       307 tP~lre~W~~sik~MssRI~~MR~aLrd~L~a-L~TPGtW---DHI~~QiG--MFSyTGLtp~qV~~li~~h~vyLl~~-  379 (410)
T KOG1412|consen  307 TPELREQWIQSIKTMSSRIKKMRTALRDHLVA-LKTPGTW---DHITQQIG--MFSYTGLTPAQVDHLIENHKVYLLSD-  379 (410)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcH---HHHHhhcc--ceeecCCCHHHHHHHHHhceEEEecC-
Confidence             2233344456888889999999999999987 4  2210   00001123  46667788776654444  4544432 


Q ss_pred             ccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                                                =||++.. .+...+|+...+|.+.++.+..
T Consensus       380 --------------------------GRInisG-LN~~NveyVAkAIde~Vr~~~~  408 (410)
T KOG1412|consen  380 --------------------------GRINISG-LNMKNVEYVAKAIDETVRAIKS  408 (410)
T ss_pred             --------------------------CcEeeec-cccccHHHHHHHHHHHHHhhcc
Confidence                                      1888876 4678999999999999887653

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.98  E-value=1e-08  Score=87.78  Aligned_cols=171  Identities=16%  Similarity=0.112  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHhCCCCCc--EEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCC-ChhhHHHHH-------HHhhCCc
Q psy8850          42 AIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTE-HKSVLDSIR-------KLENDGF  111 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~--i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~-~~s~~~~~~-------~~~~~g~  111 (397)
                      ..+.+.+-.++.|+++..-  ..+. |||.|+..++..++    +|||+++.-... |.+....+-       .+...|+
T Consensus        66 GRdtLe~vyA~vf~aE~a~VRpq~i-sGTHAI~~aLfg~L----RpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi  140 (416)
T COG4100          66 GRDTLERVYAQVFGAEAALVRPQII-SGTHAIACALFGIL----RPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGI  140 (416)
T ss_pred             chhHHHHHHHHHhccccceeeeeee-cchhHHHHHHHhcc----CCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCc
Confidence            4566788889999987432  2332 67789999999999    799999755443 333333322       2233477


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEeccc----CcccccccHHHHHHHHHhc--CcEEEEecccccCccccccC
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVN----NEIGVIQPILEIGELCRSK--GVIFHCDAAQAVGKIDINIQ  185 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~----~~tG~~~~l~~i~~l~~~~--gi~livD~a~~~~~~~~~~~  185 (397)
                      ....+|+..+|.+|.+.+...++++|++|.+.-..    -|.=.+.++++++.+.|+-  ++.++||++|+-........
T Consensus       141 ~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt  220 (416)
T COG4100         141 KYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPT  220 (416)
T ss_pred             ceeecccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCcc
Confidence            88899999999999999999999999999876432    1122333466777777764  89999999999655555556


Q ss_pred             cccccEEEeccccc-cCCC--CceEEEEecCCCCc
Q psy8850         186 NYKVDLMSFSAHKI-YGPK--GIGALYIRRNPRTR  217 (397)
Q Consensus       186 ~~~~d~~~~s~~K~-~g~~--g~g~~~~~~~~~~~  217 (397)
                      ..++|++.+|+-|. .|..  ..|++..+.++.+.
T Consensus       221 ~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~  255 (416)
T COG4100         221 HVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEA  255 (416)
T ss_pred             ccchhhhccceeeCCCCceeeccceeechHHHHHh
Confidence            66999999999994 3321  24888888765544

>KOG2040|consensus

Probab=98.93  E-value=1.2e-07  Score=89.22  Aligned_cols=284  Identities=15%  Similarity=0.115  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEEEeccCC
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVTYLKPKN  120 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~~v~~~~  120 (397)
                      .+...+..++++.|.+..+.-+-.-||.|-++++.+...   .++.++++...+|+-+...+..-.. .|++++..+.. 
T Consensus       164 sllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~---~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~~~-  239 (1001)
T KOG2040|consen  164 SLLNYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRI---NKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSDIK-  239 (1001)
T ss_pred             HHhhhHHhhhhccCCcccchhhhccchhHHHHHHHHHhh---cccceEEecCCCCcchhhhhhccccccceeEEecCHH-
Confidence            344568889999999887877777777777766665443   4567799999999999888775333 25554433322 


Q ss_pred             CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccccc
Q psy8850         121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY  200 (397)
Q Consensus       121 ~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~  200 (397)
                             +.. ...++...+++..|.+. |.+.+..++++.+++.|..+++-.---.-.+--...++++|+.++|.+.++
T Consensus       240 -------~~~-~s~~~v~gvlvQYP~t~-G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRFG  310 (1001)
T KOG2040|consen  240 -------EAD-YSSKDVSGVLVQYPDTE-GSVLDFDELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRFG  310 (1001)
T ss_pred             -------Hhh-ccccceeEEEEEcCCCC-CcccCHHHHHHHhhccCceEEEeehhhHHHccCChhhcCceeeeccccccC
Confidence                   111 11235677778777654 899999999999999998876643322222222345669999999999975


Q ss_pred             CCCC-----ceEEEEecCCCCccccccccC-----------------CccccccCCCCchhHHHHHHHHHHHH------H
Q psy8850         201 GPKG-----IGALYIRRNPRTRIEAQIHGG-----------------GHEYGLRSGTLATHQIVGMGEAFRLA------R  252 (397)
Q Consensus       201 g~~g-----~g~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~al~~~------~  252 (397)
                      .|.|     .||+.++.++...+.-.+.|-                 .+..+....|.|....-++.+-+.-+      .
T Consensus       311 VPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp  390 (1001)
T KOG2040|consen  311 VPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGP  390 (1001)
T ss_pred             ccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCc
Confidence            5544     455555533322222211110                 11122334566655444443332221      3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhh
Q psy8850         253 IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSY  330 (397)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~  330 (397)
                      .+++++.+++......|..+|++  .+.++....   ..-.+.+.... +.+++..+..  ++.++.-            
T Consensus       391 ~gL~~IArrvh~~T~~l~~~l~~--aghel~~k~---fFDTLkI~~~~-s~~~~l~rA~~~~iNlr~~------------  452 (1001)
T KOG2040|consen  391 HGLKEIARRVHNLTLILAEGLKN--AGHELQHKP---FFDTLKIRCGC-SAEEVLDRAAKRQINLRLV------------  452 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh--cchhhcccc---ccceEEEEecC-cHHHHHHHHHhhcCceEEe------------
Confidence            47899999999999999999998  555555431   12233444443 4555554433  3333210            


Q ss_pred             HHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         331 VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       331 ~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                                 ..+.|-+++-...+++|+|.++..+.
T Consensus       453 -----------ed~tigvslDETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  453 -----------EDGTIGVSLDETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             -----------ecCceEEeecccccHHHHHHHHHHHc
Confidence                       12778899988899999999998876

>KOG1411|consensus

Probab=98.76  E-value=1.3e-07  Score=82.61  Aligned_cols=264  Identities=17%  Similarity=0.177  Sum_probs=160.1

Q ss_pred             eCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc--CCCCCCCHHHHHHHhcCC---ce
Q psy8850          64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKICSD---TI  138 (397)
Q Consensus        64 ~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~--~~~~~~d~~~l~~~i~~~---~~  138 (397)
                      +-|||.|+......+...+  ++..|.++.|.+..+...+...   |+.+..+.+  ..+..+|.+.+.+.+.+.   .-
T Consensus       126 ~lSGTGaLriga~Fl~~f~--~~~~I~ip~PTWgNh~~if~~a---g~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~  200 (427)
T KOG1411|consen  126 TLSGTGALRVGAEFLARFY--PSRDIYIPDPTWGNHKNIFKDA---GLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSI  200 (427)
T ss_pred             eccCcchhhHHHHHHHhhc--cccceeecCCcccccCcccccc---CcceeeeeeccccccccchHHHHHHHhcCCCCcE
Confidence            4489999988877665543  4789999999999988777776   887766544  245668888877777653   34


Q ss_pred             EEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccc-cCccccccCcc---------cccEEEeccccccCCCC-
Q psy8850         139 LVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQA-VGKIDINIQNY---------KVDLMSFSAHKIYGPKG-  204 (397)
Q Consensus       139 ~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~-~~~~~~~~~~~---------~~d~~~~s~~K~~g~~g-  204 (397)
                      +++-...|||||+-..   +++|.++.++.+..-+.|-+|- +.+-.++-++.         ..-+++.|+.|.+|..| 
T Consensus       201 ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgE  280 (427)
T KOG1411|consen  201 ILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGE  280 (427)
T ss_pred             EEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhh
Confidence            5566678999997443   5778889999999999998864 33333322221         23467889999555433 


Q ss_pred             -ceEEE--E-ecCCCCccc----cccccCCccccccCCCCchhHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         205 -IGALY--I-RRNPRTRIE----AQIHGGGHEYGLRSGTLATHQI--VGM----GEAFRLARIEMKEELKRILFLQKRLY  270 (397)
Q Consensus       205 -~g~~~--~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~l----~~al~~~~~~~~~~~~~~~~~~~~l~  270 (397)
                       .|.+-  + +.+...+++    ..+.+       ..+.|+..+.  ++.    ....+.+...+..+.+++..++..|.
T Consensus       281 RvGa~svvc~~ad~A~rV~SQlk~liRp-------mYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~  353 (427)
T KOG1411|consen  281 RVGALSVVCKDADEAKRVESQLKILIRP-------MYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLF  353 (427)
T ss_pred             ccceeEEEecCHHHHHHHHHHHHHHhcc-------cccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence             34432  2 222222221    11111       1123333322  211    11122333357778899999999999


Q ss_pred             HHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEE
Q psy8850         271 NGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF  348 (397)
Q Consensus       271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  348 (397)
                      +.|++  .+....-..-.  -.+-+|.|-+...+++-...+  .|.+.                           +-=||
T Consensus       354 d~L~~--~gs~~~W~hI~--~QIGMF~fTgl~peQv~~l~ke~~iYmT---------------------------~dGRi  402 (427)
T KOG1411|consen  354 DALEK--EGSPGNWSHIT--KQIGMFCFTGLNPEQVDWLTKEYHIYLT---------------------------KDGRI  402 (427)
T ss_pred             HHhhc--CCCCccHHHHH--HhhheeeecCCCHHHHHHHHhhheeeec---------------------------cCceE
Confidence            99988  33222100000  112245666666666543333  44443                           12299


Q ss_pred             eeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         349 TIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       349 ~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      |++. .+...+.++.++|.++.+
T Consensus       403 S~aG-~ss~nV~yLa~aih~vtk  424 (427)
T KOG1411|consen  403 SMAG-LSSSNVPYLADAIHAVTK  424 (427)
T ss_pred             eecc-ccccCCcccchhhHhHhc
Confidence            9887 567888999988887654

>KOG1405|consensus

Probab=98.65  E-value=1.2e-06  Score=76.93  Aligned_cols=205  Identities=18%  Similarity=0.230  Sum_probs=125.8

Q ss_pred             CHHHHHHHhcC------CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccccCcc--------ccccCc
Q psy8850         125 TLSQLEEKICS------DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKI--------DINIQN  186 (397)
Q Consensus       125 d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~--------~~~~~~  186 (397)
                      .++++|++|.+      ...+++++.+++..|--..    ...+.+++++||+.+|+|+++..+..        ..++. 
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~-  332 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLD-  332 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCC-
Confidence            46778887753      2458899999999886443    68999999999999999999974332        33433 


Q ss_pred             ccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         187 YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL  265 (397)
Q Consensus       187 ~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~  265 (397)
                      ..+|+++||  | +...   |+ +...++...- ++       +.|....-.....+-+...++.+.+  +.+.++....
T Consensus       333 ~PpD~vTFS--KK~q~g---Gf-fh~~~frpn~-pY-------rifNTWmGdP~k~lll~~vv~~I~~--~~Ll~n~~~v  396 (484)
T KOG1405|consen  333 SPPDVVTFS--KKFQTG---GF-FHDEEFRPNE-PY-------RIFNTWMGDPSKNLLLEEVVQEIKR--EDLLNNVAHV  396 (484)
T ss_pred             CCccceehh--hhhhcC---cc-ccCcccCCCc-hH-------HHhhhhcCChHHHHHHHHHHHHHhH--HHHHHHHHHH
Confidence            268999888  8 5433   33 3332222111 11       1122223333445555566666655  6677788888


Q ss_pred             HHHHHHHHhh---hcCcEEEeCCCCCCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCc
Q psy8850         266 QKRLYNGLME---SIEEIYINGDMNNRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCND  339 (397)
Q Consensus       266 ~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~  339 (397)
                      .+.|..+|.+   ..|+. +..-+  ..++++.+.++..+ ...+...++  |+.+- |  |.                 
T Consensus       397 G~~l~~gL~~Lq~~~p~~-~~~~R--GrGTF~a~d~ps~~~Rdk~i~~~~~nGv~~G-G--Cg-----------------  453 (484)
T KOG1405|consen  397 GKALLKGLLELQAKYPGK-INNLR--GRGTFIAWDCPSGSIRDKLILIARLNGVNLG-G--CG-----------------  453 (484)
T ss_pred             HHHHHHHHHHHHHhCchh-hhccc--ccceEEEEeCCChHHHHHHHHHHHHcCceec-c--cc-----------------
Confidence            8888887755   12331 11111  23566667766433 234444443  44332 1  11                 


Q ss_pred             cccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         340 ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       340 ~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                         ...||+.++....+...+-+++.+.+.+..
T Consensus       454 ---~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  454 ---DKSIRFRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             ---cceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence               277999998888888899999998887753

>KOG3843|consensus

Probab=98.29  E-value=3.3e-06  Score=71.37  Aligned_cols=178  Identities=16%  Similarity=0.140  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHhCCC-CCcEEEeCChh-HHHHHHHHHhHhhhccCC-CEEEEcCCCChhhHHHHHHHhhCCcEEEEecc
Q psy8850          42 AIEKARNEVAQLIYAD-PREIIWTSGAT-ESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKP  118 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~-~~~i~~~~g~t-~a~~~~l~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~  118 (397)
                      +..++...+-.+.|+- ..+.++++=+| ..+.+++.++...  +|+ .-|+...-...|....+-..   |++++.+..
T Consensus        58 isne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~k--rpkakyiiw~ridqks~~ksi~~a---gfepiiie~  132 (432)
T KOG3843|consen   58 ISNEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHK--RPKAKYIIWLRIDQKSCFKSIIHA---GFEPIIIEN  132 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhc--CCcccEEEEEecchHHHHHHHHhc---CCCceeeec
Confidence            4455666666677752 22444444333 3455666655543  333 45677777778888777777   888777654


Q ss_pred             C---CCCCCCHHHHHHHhcC-CceEEEEecccCc---ccccccHHHHHHHHHhcCcEEEEecccccCcccc------ccC
Q psy8850         119 K---NNGLITLSQLEEKICS-DTILVSVMLVNNE---IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI------NIQ  185 (397)
Q Consensus       119 ~---~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~---tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~------~~~  185 (397)
                      -   +.-..|++.+++.+.+ ....|...+..+.   .-....+++|..+|..|+++-++..+|+..+..-      ...
T Consensus       133 i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~  212 (432)
T KOG3843|consen  133 ILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAE  212 (432)
T ss_pred             cccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhh
Confidence            2   2234588888888876 3443433222222   1223338999999999999999999998665310      111


Q ss_pred             cccccEEEecccc-ccCCCCceEEEE-ecCCCCcccccccc
Q psy8850         186 NYKVDLMSFSAHK-IYGPKGIGALYI-RRNPRTRIEAQIHG  224 (397)
Q Consensus       186 ~~~~d~~~~s~~K-~~g~~g~g~~~~-~~~~~~~~~~~~~~  224 (397)
                      .-.+|.++.|+.| +..|.|.+++.. ++..++.+...++|
T Consensus       213 ~grida~vqsldknf~vpvggaiia~fk~n~iq~iak~ypg  253 (432)
T KOG3843|consen  213 CGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAKMYPG  253 (432)
T ss_pred             hccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHHhCCC
Confidence            1157889999999 778887333332 33344445444444

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=98.01  E-value=3.5e-05  Score=61.81  Aligned_cols=55  Identities=18%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHhC----CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChh
Q psy8850          40 EKAIEKARNEVAQLIY----ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS   98 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~----~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s   98 (397)
                      ....+.+.+.+.+.+|    +++++|++|+|++.|+.+++++++    ++||.|+++.|.|++
T Consensus        95 ~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~----dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         95 ANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA----DPGDAFLVPTPYYAA  153 (153)
T ss_pred             HHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc----CCCCEEEEeCCCCCC
Confidence            3455556666666656    467789999999999999999998    899999999999874

>KOG2142|consensus

Probab=95.81  E-value=0.036  Score=53.48  Aligned_cols=356  Identities=14%  Similarity=0.112  Sum_probs=173.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCChhHHHHHHHHHh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGA   78 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~i~~~~g~t~a~~~~l~~l   78 (397)
                      |+++.+...+.-.+.+...... ...||++ ....+..........|-.+..+++...+  .+.++. .++|+..++.++
T Consensus        25 dhag~tl~sesq~~g~~~~sq~~e~~nphs-~~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp~-~t~al~~vae~f  102 (728)
T KOG2142|consen   25 DHAGRTLFSESQLEGVAFQSQSSENANPHS-HLGTSRSLARLVAQVRLRILALFNTTAFDYEVSLPA-LTEALKLVAEAF  102 (728)
T ss_pred             HhhhhhhhhhcccchhhhhhhccccCCCcc-cccchHHHHHHHHHHHHHHHHHhccccccccchhHH-HHHHHHHHHHhC
Confidence            4444444444444443333322 2356777 6666666667778888888888886433  477777 999999999988


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHH-HHh--hCCcEEEEe-ccCC---CCCCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIR-KLE--NDGFRVTYL-KPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~-~~~--~~g~~v~~v-~~~~---~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~  151 (397)
                      ...  ..+.+|--...++........ .++  -.|+.+..+ ..++   .....+.+...-+ ....+.......|-.|.
T Consensus       103 p~~--s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q~~~i~~~~~~sls~~~~~l-s~~~L~~g~a~~nfeg~  179 (728)
T KOG2142|consen  103 PFY--SQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQTNEISDSEEFSLSESEANL-SEHSLFGGAAQSNFEGD  179 (728)
T ss_pred             ccc--cccccccchhhhhhcccccccceeeeeeeccceEEeeeeeeccccccccccccccCc-ccchhcccchhcccccc
Confidence            643  233444332222222222211 111  113333333 2211   1111111111000 12345555555555555


Q ss_pred             cccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCcc----ccccccCC-
Q psy8850         152 IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRI----EAQIHGGG-  226 (397)
Q Consensus       152 ~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~----~~~~~~~~-  226 (397)
                      .+....+-.+.-..+-++++|++.-....+++...+.+|++.. +.|++|.+. |.+.+..+..+..    ....+.|. 
T Consensus       180 kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~f~~~~~-lltiFgyet-gAvlv~~r~A~~~Ggkt~sa~f~wp~  257 (728)
T KOG2142|consen  180 KIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYPFDFNPK-LLTIFGYET-GAVLVMNRSAELKGGKTASAEFSWPM  257 (728)
T ss_pred             eeeeeeecccccCCceEEEEEeecccccccchHhhCCCcccch-heeecCCCc-hhhHHHhhhhHhhcCccceeecccch
Confidence            4222222222224477899999988888889988889999998 999888653 5555443322221    00111110 


Q ss_pred             -------ccccccCCCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhc---C-----cEEEeCCCCC
Q psy8850         227 -------HEYGLRSGTLATHQIVGMGEAFRLARI---EMKEELKRILFLQKRLYNGLMESI---E-----EIYINGDMNN  288 (397)
Q Consensus       227 -------~~~~~~~~~~~~~~~~~l~~al~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~---~-----~~~~~~~~~~  288 (397)
                             ...+++.|+.+.-.++.+...+.....   ++..+....-.+.+.+.-.|+..-   +     +.....  +.
T Consensus       258 ~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~lG~kdmd~yglS~f~--Pd  335 (728)
T KOG2142|consen  258 LYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALALGPKDMDSYGLSLFQ--PD  335 (728)
T ss_pred             HHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhhccCcchHhhhhhhccC--cc
Confidence                   113344555555444444343333322   234444444444444444444300   0     111111  12


Q ss_pred             CCCceEEEEecCCCh----HHHHHH--hCCcEecccCccCCCCCChhh---------HHHhhC-CCccccCceEEEeeCC
Q psy8850         289 RIPHNLNISFNFIEG----ESLLMA--IKDIAVSSGSACTSASLEPSY---------VLRALG-CNDELAHSSIRFTIGR  352 (397)
Q Consensus       289 ~~~~~~~~~~~~~~~----~~~~~~--l~~i~~~~g~~~~~~~~~~~~---------~~~~~g-~~~~~~~~~iRi~~~~  352 (397)
                      .....+.+.|...++    .-+++.  +.++..+.|-+|..|.++-..         .++..- ..++.+.+   ++ +.
T Consensus       336 fqg~sf~fv~g~d~psgfGcl~VkKs~i~~l~lrtGcfcn~Gack~~pgl~~~~~~~~~~~g~~cgD~dg~~---~s-~~  411 (728)
T KOG2142|consen  336 FQGPSFYFVFGRDDPSGFGCLEVKKSAISGLELRTGCFCNIGACKIYPGLYLEMSQKGLSAGKGCGDNDGQP---VS-GY  411 (728)
T ss_pred             ceeeeEEEEeccCCCCceeeeeeehhhhhceeccCCCCCCCcceeecccccHHHHHHHhhhccccccCCCCc---cc-cc
Confidence            223445555543322    111111  348888888888776443211         011100 11111222   55 66


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy8850         353 FTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       353 ~~~~~~i~~~~~~l~~~~  370 (397)
                      ..+.+++..+.+++..-+
T Consensus       412 ~~~~~~~~a~~~~~v~~~  429 (728)
T KOG2142|consen  412 MQTPADVGAYLSAQVSDV  429 (728)
T ss_pred             ccchhhhhHHHHHhhhhh
Confidence            678899998888776543

>PLN02672 methionine S-methyltransferase

Probab=85.90  E-value=8.7  Score=41.07  Aligned_cols=132  Identities=11%  Similarity=0.047  Sum_probs=74.7

Q ss_pred             hhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh--
Q psy8850          37 WTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN--  108 (397)
Q Consensus        37 ~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~--  108 (397)
                      +..+.+...+|..++.++.      ..+++|++-++-..|++.+++.+.....-- |+- ++.+-+.-...+...-..  
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~  499 (1082)
T PLN02672        422 CEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIV-DEH-LTRWLPKKWLTSLAIENATS  499 (1082)
T ss_pred             CCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhh-hhh-hhccCCHHHHhHhhhhcccc
Confidence            3344456667777776654      357789999999999999988664211100 111 222333334333333211  


Q ss_pred             ---CCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecc
Q psy8850         109 ---DGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA  174 (397)
Q Consensus       109 ---~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a  174 (397)
                         .+.+++.+.-..    .-+.+.++++. ++++|+........-+--..+.|.+.+++.|++++.|..
T Consensus       500 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (1082)
T PLN02672        500 DSKSDDVITVIEAPR----QSDLVIELIKKLKPQVVVTGMADFEMRTSTAFEHLLNVTAEIGARLFLDIS  565 (1082)
T ss_pred             cCccCCeEEEEeCCC----cchHHHHHHHhCCCeEEEEeccchhhhhHHHHHHHHHHHHhhCcEEEEehh
Confidence               023333333221    12244455544 677776654443333333478899999999999999976

>KOG0630|consensus

Probab=85.43  E-value=35  Score=32.67  Aligned_cols=189  Identities=16%  Similarity=0.209  Sum_probs=100.9

Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEecc----CC---CCCCCHHHHHHHhcC-----C-ceEEEEecccCcccccc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKP----KN---NGLITLSQLEEKICS-----D-TILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~----~~---~~~~d~~~l~~~i~~-----~-~~~v~~~~~~~~tG~~~  153 (397)
                      ..+++++..|.-...-..  ...|+..+.|..    ++   .|.||...+++.|.+     + +-+++..-..+-.|...
T Consensus       232 Pt~YiS~alh~~l~hYaa--refGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnD  309 (838)
T KOG0630|consen  232 PTFYISEALHMDLLHYAA--REFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQND  309 (838)
T ss_pred             ceEEEcccccHHHHHHHH--HHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchH
Confidence            567777776654432221  122665444322    22   468999999999864     2 33444445555677777


Q ss_pred             cHHHHHHHHHhcC-cEEEEecccccCcc----ccccC---cccccEEEeccccccCCCCceEEEEecCCCCccccccccC
Q psy8850         154 PILEIGELCRSKG-VIFHCDAAQAVGKI----DINIQ---NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       154 ~l~~i~~l~~~~g-i~livD~a~~~~~~----~~~~~---~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      -+-+|.++|++|+ .|++.-+- +...+    |-+..   .-..|.+.....-|+|.+..-++...+.+.......+.. 
T Consensus       310 mi~kildi~eahakfWLHasGh-aiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg~aaSafes-  387 (838)
T KOG0630|consen  310 MILKILDICEAHAKFWLHASGH-AIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEGSAASAFES-  387 (838)
T ss_pred             HHHHHHHHHHHhhheeEeeccc-hhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeecccccccchhccc-
Confidence            7999999999997 88876532 11111    11110   003456665555567755455555543322111111000 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDM  286 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  286 (397)
                      ....+-   .   ...+.++.++..+.. -+..+.+..-.+.+.|.+.+.+ .+++.+.+..
T Consensus       388 dpi~re---k---LdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa-~~eiemig~d  442 (838)
T KOG0630|consen  388 DPILRE---K---LDALPLWTALQALGGKAIADMIENAFLLCKILFEGASA-CEEIEMIGHD  442 (838)
T ss_pred             ChHHHH---h---hccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhc-CCceeEeccC
Confidence            000000   0   112333344444322 2555666666778888888888 8888887653

>KOG1465|consensus

Probab=83.34  E-value=33  Score=30.62  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=64.3

Q ss_pred             cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCC--CChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCc
Q psy8850          60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQT--EHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDT  137 (397)
Q Consensus        60 ~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~--~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~  137 (397)
                      +|++|.|.+..+..-+......  ++.-.|+|.+.  .+.+ +.....+...|++.+.++       | .++-+++.+=-
T Consensus       164 EviLT~g~SrTV~~FL~~A~kk--~Rkf~viVaE~~p~~qg-H~~Ak~la~~giettVI~-------d-aaVfA~MsrVn  232 (353)
T KOG1465|consen  164 EVILTLGSSRTVENFLKHAAKK--GRKFRVIVAEGAPNNQG-HELAKPLAQAGIETTVIP-------D-AAVFAMMSRVN  232 (353)
T ss_pred             ceEEecCccHHHHHHHHHHHhc--cCceEEEEeecCCcccc-hHhhHHHHHcCCeeEEec-------c-HHHHHHhhhcc
Confidence            6999999887766666655521  24456666542  2233 233333445588877776       3 34445555545


Q ss_pred             eEEEEecccCcccccc-c--HHHHHHHHHhcCcEEEEecc
Q psy8850         138 ILVSVMLVNNEIGVIQ-P--ILEIGELCRSKGVIFHCDAA  174 (397)
Q Consensus       138 ~~v~~~~~~~~tG~~~-~--l~~i~~l~~~~gi~livD~a  174 (397)
                      ++|+-++.-.+.|.+. +  ...++..||+|-++|++=+.
T Consensus       233 KVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp  272 (353)
T KOG1465|consen  233 KVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLAP  272 (353)
T ss_pred             eEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEecc
Confidence            6777776666655443 3  46788888899999988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	397
1p3w_B	404	X-Ray Crystal Structure Of E. Coli Iscs Length = 40		1e-165
3lvj_A	423	Crystal Structure Of E.Coli Iscs-Tusa Complex (Form		1e-164
4eb5_A	382	A. Fulgidus Iscs-Iscu Complex Structure Length = 38		3e-83
3vax_A	400	Crytal Structure Of Dnda From Streptomyces Lividans		1e-75
1ecx_A	384	Nifs-Like Protein Length = 384		5e-69
1eg5_A	384	Nifs-like Protein Length = 384		2e-65
3a9x_A	432	Crystal Structure Of Rat Selenocysteine Lyase Lengt		1e-47
3gzc_A	440	Structure Of Human Selenocysteine Lyase Length = 44		1e-46
3gzd_A	440	Human Selenocysteine Lyase, P1 Crystal Form Length		2e-45
4ixo_A	380	X-ray Structure Of Nifs-like Protein From Rickettsi		6e-34
1t3i_A	420	Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De		3e-18
1c0n_A	406	Csdb Protein, Nifs Homologue Length = 406		2e-15
1jf9_A	408	Crystal Structure Of Selenocysteine Lyase Length =		5e-15
1i29_A	406	Crystal Structure Of Csdb Complexed With L-Propargy		6e-15
1kmj_A	406	E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE		8e-15
3cai_A	406	Crystal Structure Of Mycobacterium Tuberculosis Rv3		2e-07
1elq_A	390	Crystal Structure Of The Cystine C-S Lyase C-Des Le		8e-07
1n2t_A	386	C-Des Mutant K223a With Gly Covalenty Linked To The		3e-06
3kgx_A	393	Crystal Structure Of Putative Aminotransferase (Aah		3e-04
2ch1_A	396	Structure Of Anopheles Gambiae 3-Hydroxykynurenine		4e-04

>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs Length = 404

Iteration: 1
 Score =  576 bits (1484), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 262/399 (65%), Positives = 343/399 (85%), Gaps = 3/399 (0%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSATTP+DPRV +KM+ ++ +   FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 7   LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 66
Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 67  REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 126
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           + NG+I L +LE  +  DTILVS+M VNNEIGV+Q I  IGE+CR++G+I+H DA Q+VG
Sbjct: 127 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 186
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++   KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL  
Sbjct: 187 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 246
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEA+R+A+ EM  E++R+  L+ RL+NG+ + IEE+Y+NGD+ +  P+ LN+SF
Sbjct: 247 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI-KDIEEVYLNGDLEHGAPNILNVSF 305
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 306 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 365
Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+TI+L++  + +LR+LSPLW+M+K+G+DLN+I+WA H
Sbjct: 366 IDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 404

>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1) Length = 423

Iteration: 1
 Score =  575 bits (1483), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 262/399 (65%), Positives = 343/399 (85%), Gaps = 3/399 (0%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSATTP+DPRV +KM+ ++ +   FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 26  LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 85
Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 86  REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 145
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           + NG+I L +LE  +  DTILVS+M VNNEIGV+Q I  IGE+CR++G+I+H DA Q+VG
Sbjct: 146 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 205
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++   KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL  
Sbjct: 206 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 265
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEA+R+A+ EM  E++R+  L+ RL+NG+ + IEE+Y+NGD+ +  P+ LN+SF
Sbjct: 266 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI-KDIEEVYLNGDLEHGAPNILNVSF 324
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 325 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 384
Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+TI+L++  + +LR+LSPLW+M+K+G+DLN+I+WA H
Sbjct: 385 IDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 423

>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure Length = 382

Iteration: 1
 Score =  305 bits (781), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 155/382 (40%), Positives = 257/382 (67%), Gaps = 7/382 (1%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
            DY++  P+D R+++ M+PY+   FGNP+S  H YG+ A +A+++AR +VA+L+      
Sbjct: 4   FDYTSAKPVDERILEAMLPYMTESFGNPSSV-HSYGFKAREAVQEAREKVAKLVNGGGGT 62
Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           +++TSGATE+NNLAI G A    ++GKHI+    EH SV++  + L+  GF V Y+    
Sbjct: 63  VVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
            G + +S +++K+  DTILVSV   NNEIG IQP+ EI E+   K  + H DA  +VG+I
Sbjct: 123 YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQI 181
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
           +++++    D+++ S++ IYGPKG+GAL+IR+    +++  I GGG E GLRSG+     
Sbjct: 182 EVDVEKIGADMLTISSNDIYGPKGVGALWIRK--EAKLQPVILGGGQENGLRSGSENVPS 239
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVG G+A  +  +E +EE +R+  L+ R+ + +++ IEE Y+NG    R+P+N+N+ F++
Sbjct: 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSY 298
Query: 301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           IEGES+++++    I  S+GSAC+S +L+PS+VL A G   E AH ++  T+GR+ T+++
Sbjct: 299 IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED 358
Query: 359 IDFTIKLLKMKVKKLRELSPLW 380
           +D  +++L   +++LR +SPL+
Sbjct: 359 VDRLLEVLPGVIERLRSMSPLY 380

>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans Length = 400

Iteration: 1
 Score =  280 bits (716), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/381 (40%), Positives = 234/381 (61%), Gaps = 14/381 (3%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +D +ATT +D RV D ++ ++  +FGN  SR H YG  A++ +E+AR  +A  + A+P E
Sbjct: 24  LDAAATTRVDQRVADIVLHWMTAEFGNAGSR-HEYGIRAKRGVERAREYLASTVSAEPDE 82
Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
           +I+TSGATESNN+A+ G A + ++ G+ HIIT   EHK+VL+ +  L   GF V +L P 
Sbjct: 83  LIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPG 142
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
            +G I++  + E++  DT+LVS+M VNNE GVIQP+ E+ +  R+     H DAAQ  GK
Sbjct: 143 PSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGK 202
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR-----NPRTRIEAQIHGGGHEYGLRSG 234
           +  ++    +D++S S HKI  PKG+GAL  RR     + R  +E  + GGG E  LR G
Sbjct: 203 VPGDLTT-PIDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPG 261
Query: 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL 294
           TL    I+G+ EA ++   E  +       L+ RL  GL  +     +NGD ++ +PH L
Sbjct: 262 TLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLAST--SFQVNGDQDHVVPHIL 319
Query: 295 NISFNFIEGESLLMAIKD-IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF 353
           N+SF  ++ E+ L+ +KD +AV++GSA TSAS  PS+VLRA+G  +E A  S+RF+   +
Sbjct: 320 NLSFEDVDAEAFLVTLKDLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFS---W 376
Query: 354 TTEKEIDFTIKLLKMKVKKLR 374
           T  +  D  ++ L   V KL+
Sbjct: 377 TPGQATDLDVEELARGVAKLK 397

>pdb|1ECX|A Chain A, Nifs-Like Protein Length = 384

Iteration: 1
 Score =  258 bits (658), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 223/368 (60%), Gaps = 9/368 (2%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
            D +ATT +D RV+++MI + R ++GNP S  H  G  A   +EKAR +VA+++   P E
Sbjct: 5   FDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSE 63
Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           I +TS ATES N  +K  A  ++KR + IIT   EHK+VL++++ L   GF+V Y+   +
Sbjct: 64  IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS 123
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVG 178
            G++ L +LE+ +  DT LVS+M  NNE+G IQP+ ++  + + K    + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           KI  +++  +VD  SFSAHK +GPKG+G  YIR+     I   IHGGG E GLRSGT   
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG--VPIRPLIHGGGQERGLRSGTQNV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
             IVG   A  +A  E+ E  K +  L+ +L +GLM     I    +++  +P+ L++SF
Sbjct: 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEIS--LPNTLSVSF 299
Query: 299 NFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
             I G +L  L++   I VS+ SACTS      +VL A+G +  +A  +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359
Query: 357 KEIDFTIK 364
           +E+D+ +K
Sbjct: 360 EEVDYFLK 367

>pdb|1EG5|A Chain A, Nifs-like Protein Length = 384

Iteration: 1
 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 222/386 (57%), Gaps = 16/386 (4%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
            D +ATT +D RV+++ I + R ++GNP S  H  G  A    EKAR +VA+++   P E
Sbjct: 5   FDNNATTRVDDRVLEEXIVFYREKYGNPNS-AHGXGIEANLHXEKAREKVAKVLGVSPSE 63
Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           I +TS ATES N  +K  A  ++KR + IIT   EHK+VL++ + L   GF+V Y+   +
Sbjct: 64  IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETXKYLSXKGFKVKYVPVDS 123
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVG 178
            G++ L +LE+ +  DT LVS+   NNE+G IQP+ ++  + + K    + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           KI  +++  +VD  SFSAHK +GPKG+G  YIR+     I   IHGGG E GLRSGT   
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG--VPIRPLIHGGGQERGLRSGTQNV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
             IVG   A  +A  E+ E  K    L+ +L +GL      I    +++  +P+ L++SF
Sbjct: 242 PGIVGAARAXEIAVEELSEAAKHXEKLRSKLVSGLXNLGAHIITPLEIS--LPNTLSVSF 299
Query: 299 NFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
             I G +L  L++   I VS+ SACTS      +VL A G +  +A  +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAXGVDRRIAQGAIRISLCKYNTE 359
Query: 357 KEIDFTIKLLKMKVKKLRELSPLWDM 382
           +E+D+ +       KK+ E+    D+
Sbjct: 360 EEVDYFL-------KKIEEILSFLDL 378

>pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase Length = 432

Iteration: 1
 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/412 (32%), Positives = 213/412 (51%), Gaps = 44/412 (10%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDY+ATTP++P V+  +   ++  +GNP+S +++ G  A+  I  AR  +A++I   P++
Sbjct: 22  MDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQD 80
Query: 61  IIWTSGATESNNLAIKGAAHFYKKRG-----------------KHIITVQTEHKSVLDSI 103
           II+TSG TESNNL I      + ++                   H IT   EH S+   +
Sbjct: 81  IIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPL 140
Query: 104 RKL-ENDGFRVTYLK-PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
             L E+    VT++   K NG + +  +   +   T LV++ML NNE GVI PI EI   
Sbjct: 141 EHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRR 200
Query: 162 CRS----------KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
            ++            V+ H DAAQA+GK  +++++  VD ++   HK YGP+ IGALY+R
Sbjct: 201 IKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR 259
Query: 212 RNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRIL--FLQ 266
              + T +   + GGG E   R GT  T  I G+G+A  L     E  E   R +  +L+
Sbjct: 260 GVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLE 319
Query: 267 KRLYNGLMESIEEIYINGDMNN--RIPHNLNISF--NFIEGESLLMAIKDIAVSSGSACT 322
           +RL     E  + I++N       R+P+  N S   + + G  +L   + +  S G++C 
Sbjct: 320 ERLE---AEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCH 376
Query: 323 SASLE-PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
           S   + PS VL + G   ++A +++R ++GR TT  E+D  ++ LK  V +L
Sbjct: 377 SDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL 428

>pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase Length = 440

Iteration: 1
 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/414 (31%), Positives = 207/414 (50%), Gaps = 43/414 (10%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDY+ATTP++P V+  M   +   +GNP+S  +  G  A+  I  AR  +A++I   P++
Sbjct: 29  MDYNATTPLEPEVIQAMTKAMWEAWGNPSS-PYSAGRKAKDIINAARESLAKMIGGKPQD 87
Query: 61  IIWTSGATESNNLAIKGAA-HFY----------------KKRGKHIITVQTEHKSVLDSI 103
           II+TSG TESNNL I     HF+                K    H IT   EH S+   +
Sbjct: 88  IIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSIRLPL 147
Query: 104 RKLENDGFRVTYLKP--KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
             L  +        P  K +G   +  +   +   T LV++ML NNE G++ P+ EI + 
Sbjct: 148 EHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEISQR 207
Query: 162 CRS----------KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
            ++            ++ H DAAQA+GK  +++++  VD ++   HK YGP+ IGALYIR
Sbjct: 208 IKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGALYIR 266
Query: 212 R-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRIL--FLQ 266
                T +   + GGG E   R GT  T  I G+G+A  L     E  E   R +  +L+
Sbjct: 267 GLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLE 326
Query: 267 KRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNF--IEGESLLMAIKDIAVSSGSACT 322
           +RL     +  + I++N       R+P+  N S     ++G  +L   + +  S G+AC 
Sbjct: 327 ERLEAEFGQ--KRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAACH 384
Query: 323 SA-SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375
           S    +PS VL + G   ++A +++R ++GR TT  E+D  ++ LK  V +L +
Sbjct: 385 SDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLED 438

>pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form Length = 440

Iteration: 1
 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/414 (31%), Positives = 206/414 (49%), Gaps = 43/414 (10%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDY+ATTP++P V+  M   +   +GNP+S  +  G  A+  I  AR  +A++I   P++
Sbjct: 29  MDYNATTPLEPEVIQAMTKAMWEAWGNPSS-PYSAGRKAKDIINAARESLAKMIGGKPQD 87
Query: 61  IIWTSGATESNNLAIKGAA-HFY----------------KKRGKHIITVQTEHKSVLDSI 103
           II+TSG TESNNL I     HF+                K    H IT   EH S+   +
Sbjct: 88  IIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSIRLPL 147
Query: 104 RKLENDGFRVTYLKP--KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
             L  +        P  K +G   +  +   +   T LV++ML NNE G++ P+ EI + 
Sbjct: 148 EHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEISQR 207
Query: 162 CRS----------KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
            ++            ++ H DAAQA+GK  +++++  VD ++   HK YGP+ IGALYIR
Sbjct: 208 IKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGALYIR 266
Query: 212 R-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRIL--FLQ 266
                T +   + GGG E   R GT  T  I G+G+A  L     E  E   R +  +L+
Sbjct: 267 GLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLE 326
Query: 267 KRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNF--IEGESLLMAIKDIAVSSGSACT 322
           +RL     +  + I++N       R+P+  N S     ++G  +L   + +  S G+A  
Sbjct: 327 ERLEAEFGQ--KRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAAXH 384
Query: 323 SA-SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375
           S    +PS VL + G   ++A +++R ++GR TT  E+D  ++ LK  V +L +
Sbjct: 385 SDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLED 438

>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia Africae Esf-5 Length = 380

Iteration: 1
 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 185/373 (49%), Gaps = 24/373 (6%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL--IYADP 58
           +D++ATT IDPRV + +I  +  +  NP+S  H  G  A+  IE  R ++A    I    
Sbjct: 12  LDHNATTFIDPRVKEFIISLMDKEL-NPSSA-HSSGRFAKNLIETVRAQIATALGITLSS 69
Query: 59  RE--IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL 116
           RE  I +TS  TE NNL +K   +FY      I     EH S+ + I    N    +  +
Sbjct: 70  REYDITFTSSGTEGNNLIMK---NFYDG---DIFISAIEHLSIYNHINYAPN----IKVI 119
Query: 117 KPKNNGLITLSQLEEKICSDTI---LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 173
                GL+ L  LEE +        LVS+++ NNE GV+Q I EIG++ +     FH D 
Sbjct: 120 SVNTQGLVDLEHLEELLAQSNTSKKLVSIIMANNESGVLQDIAEIGKITKKYEAKFHSDL 179
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 233
            Q  G+I INI+   +D  + S H I G +G  AL    N   +I   I GGG E  +RS
Sbjct: 180 VQGFGRIPINIKALGLDFATISGHXIGGGQGGAALISSSN--FQITPMIIGGGQEKSVRS 237
Query: 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHN 293
           GT     I G G A  L    + E   +I  LQ+ L   L +    + I  +   R+P+ 
Sbjct: 238 GTENVLAIAGFGLASALRTDNISENYIKIKKLQENLEKKL-KKYPNVNIVSNNVARLPNT 296
Query: 294 LNISFNFIEGESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351
             I+    + ++ L+   + +I VSSGSAC+S  +  S+VL  +G  +E A SSIR ++ 
Sbjct: 297 TLITIPNTDAQAKLIGFDLHNICVSSGSACSSGKISKSHVLTNMGVGEEEAKSSIRISLS 356
Query: 352 RFTTEKEIDFTIK 364
              T ++I+  I+
Sbjct: 357 HTNTVRDIEAFIE 369

>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 163/393 (41%), Gaps = 35/393 (8%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
           +D +AT+     V++K++ Y      N     H     A  A E  RN+VA+ I A  PR
Sbjct: 32  LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPR 91
Query: 60  EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKP 118
           EI++T  ATE+ NL          K G  IIT   EH S L   + +    G  + +++ 
Sbjct: 92  EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL 151
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
                  L   +  +   T LV+V+ ++N +G + P  EI +L    G     DA Q+  
Sbjct: 152 DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAP 211
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227
              +++Q    D +  S HK+  P GIG LY +      +     GGG            
Sbjct: 212 HYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPP-FFGGGEMIAEVFFDHFT 270
Query: 228 ----EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYI 282
                +   +GT A  + + +G A   L  + M+      + L   L+ GL + I ++ +
Sbjct: 271 TGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRL 329
Query: 283 NGDMNNRIPHNLNISFNFI---EGESLLMAIKD-IAVSSGSACTSASLEPSYVLRALGCN 338
            G            SFN       +   M  +D IA+ SG  CT    +P + L      
Sbjct: 330 YGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCT----QPLHRLFD---- 381
Query: 339 DELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK 371
              A  S R ++  + T++EID  ++ L+  ++
Sbjct: 382 ---ASGSARASLYFYNTKEEIDLFLQSLQATIR 411

>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue Length = 406

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 6/215 (2%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
           +D +A+     +V+D    + R  +    +  H     A + +E  R   +  I A    
Sbjct: 27  LDSAASAQKPSQVIDAEAEFYRHGYAAVHAGAHTLSAQATEKMENVRKRASLFINARSAE 86
Query: 60  EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYL 116
           E+++  G TE  NL      +   + G +II  Q EH + +   + L        RV  L
Sbjct: 87  ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 146
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
            P  +G + L  L     + T L+++  V+N +G   P+ E+  L    G     D AQA
Sbjct: 147 NP--DGTLQLETLPTLFDAATRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 204
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
           V    +++Q    D   FS HK+YGP GIG LY++
Sbjct: 205 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVK 239

>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase Length = 408

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 153/390 (39%), Gaps = 40/390 (10%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
           +D +A+     +V+D    + R  +       H     A + +E  R   +  I A    
Sbjct: 29  LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE 88
Query: 60  EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYL 116
           E+++  G TE  NL      +   + G +II  Q EH + +   + L        RV  L
Sbjct: 89  ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 148
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
            P  +G + L  L       T L+++  V+N +G   P+ E+  L    G     D AQA
Sbjct: 149 NP--DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 206
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG---------- 226
           V    +++Q    D   FS HK+YGP GIG LY++      +     GG           
Sbjct: 207 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG 266
Query: 227 -----HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL--MESIEE 279
                  +   +GT  T  I+G+G A           +    + Q  ++  L  +ES+ +
Sbjct: 267 TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAE--YEQNLMHYALSQLESVPD 324
Query: 280 IYINGDMN--NRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGC 337
           + + G  N    I  NL     +  G    +    IAV +G  C +  L   Y + A+ C
Sbjct: 325 LTLYGPQNRLGVIAFNLGKHHAYDVGS--FLDNYGIAVRTGHHC-AMPLMAYYNVPAM-C 380
Query: 338 NDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
                    R ++  + T +E+D  +  L+
Sbjct: 381 ---------RASLAMYNTHEEVDRLVTGLQ 401

>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With L-Propargylglycine Length = 406

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 153/390 (39%), Gaps = 40/390 (10%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
           +D +A+     +V+D    + R  +       H     A + +E  R   +  I A    
Sbjct: 27  LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE 86
Query: 60  EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYL 116
           E+++  G TE  NL      +   + G +II  Q EH + +   + L        RV  L
Sbjct: 87  ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 146
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
            P  +G + L  L       T L+++  V+N +G   P+ E+  L    G     D AQA
Sbjct: 147 NP--DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 204
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG---------- 226
           V    +++Q    D   FS HK+YGP GIG LY++      +     GG           
Sbjct: 205 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG 264
Query: 227 -----HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL--MESIEE 279
                  +   +GT  T  I+G+G A           +    + Q  ++  L  +ES+ +
Sbjct: 265 TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAE--YEQNLMHYALSQLESVPD 322
Query: 280 IYINGDMN--NRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGC 337
           + + G  N    I  NL     +  G    +    IAV +G  C +  L   Y + A+ C
Sbjct: 323 LTLYGPQNRLGVIAFNLGKHHAYDVGS--FLDNYGIAVRTGHHC-AMPLMAYYNVPAM-C 378
Query: 338 NDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
                    R ++  + T +E+D  +  L+
Sbjct: 379 ---------RASLAMYNTHEEVDRLVTGLQ 399

>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE PERSULFIDE Intermediate (Residue Css). Length = 406

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 6/215 (2%)
Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
           +D +A+     +V+D    + R  +       H     A + +E  R   +  I A    
Sbjct: 27  LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE 86
Query: 60  EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYL 116
           E+++  G TE  NL      +   + G +II  Q EH + +   + L        RV  L
Sbjct: 87  ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 146
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
            P  +G + L  L       T L+++  V+N +G   P+ E+  L    G     D AQA
Sbjct: 147 NP--DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA 204
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
           V    +++Q    D   FS HK+YGP GIG LY++
Sbjct: 205 VMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVK 239

>pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c Protein Length = 406

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/345 (20%), Positives = 151/345 (43%), Gaps = 32/345 (9%)
Query: 43  IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR-GKHIITVQTEHKS-VL 100
           ++ AR  VA L+ ADP  ++   GA  +  L++   A   +   G  +I  + + ++ + 
Sbjct: 71  LDAAREAVADLVNADPGGVVL--GADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIA 128
Query: 101 DSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159
             +R     G +V + +     G +   Q E  I   T LV+V   +  +G +  +  + 
Sbjct: 129 PWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMT 188
Query: 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR-------- 211
           +L    G +   D + A     ++I+    D+++ +AH   GP  IGA+  R        
Sbjct: 189 KLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSVMNSF 247
Query: 212 ----RNPRTRIEAQIHGGGHEYGLRSGTLATHQ-IVGMGEAFRLARIE-MKEELKRILFL 265
                NP     A++  G H++GL +G +A+ + +  + E+ R +R E +   ++     
Sbjct: 248 GSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAY 307
Query: 266 QKRLYNGLMESIEE---IYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACT 322
             R+++ LM S+     + + G    +IP  ++ + + +  + ++  + D      +   
Sbjct: 308 LNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHKVPADRVVQRLAD------NGIL 360
Query: 323 SASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
           + +   S VL  LG ND     ++   +  ++T  E+D  ++ L 
Sbjct: 361 AIANTGSRVLDVLGVND--VGGAVTVGLAHYSTMAEVDQLVRALA 403

>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des Length = 390

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 26/195 (13%)
Query: 29  ASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88
           A+  HI     ++ I + R  +A+    DP  I  T   T   ++ + G       +G  
Sbjct: 52  AANQHI-----QQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWG---LDWHQGDE 103
Query: 89  IITVQTEHKSVLDSIRKLENDGFRVTY--------LKPKNNGLITLSQLEEKICSDTILV 140
           I+    EH  ++  ++ +    F +TY        L   +   +  + L  K  +  +++
Sbjct: 104 ILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAATLNQGDAAAVLANHLGPK--TRLVIL 160
Query: 141 SVMLVNNEIGVIQPILEIGELCR----SKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSA 196
           S +L N   G + P+ EI  +CR    +  V    D AQ+ G + ++    +VD  +F+ 
Sbjct: 161 SHLLWNT--GQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTG 218
Query: 197 HKIY-GPKGIGALYI 210
           HK + GP G+G LYI
Sbjct: 219 HKWFAGPAGVGGLYI 233

>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The Plp-Cofactor Length = 386

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 26/195 (13%)
Query: 29  ASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88
           A+  HI     ++ I + R  +A+    DP  I  T   T   ++ + G       +G  
Sbjct: 48  AANQHI-----QQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWG---LDWHQGDE 99
Query: 89  IITVQTEHKSVLDSIRKLENDGFRVTY--------LKPKNNGLITLSQLEEKICSDTILV 140
           I+    EH  ++  ++ +    F +TY        L   +   +  + L  K  +  +++
Sbjct: 100 ILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAATLNQGDAAAVLANHLGPK--TRLVIL 156
Query: 141 SVMLVNNEIGVIQPILEIGELCR----SKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSA 196
           S +L N   G + P+ EI  +CR    +  V    D AQ+ G + ++    +VD  +F+ 
Sbjct: 157 SHLLWNT--GQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTG 214
Query: 197 HKIY-GPKGIGALYI 210
           H  + GP G+G LYI
Sbjct: 215 HAWFAGPAGVGGLYI 229

>pdb|3KGX|A Chain A, Crystal Structure Of Putative Aminotransferase (Aah25799.1) From Mus Musculus At 1.80 A Resolution Length = 393

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGVI 168
           G RV  +  K     TL ++EE +     +L+ ++   +  GV+QP+   GELC     +
Sbjct: 121 GARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCL 180
Query: 169 FHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY-GPKGI 205
              D+  ++G + I +    +D+M  S+ K+   P GI
Sbjct: 181 LLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGI 218

>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine Transaminase Length = 396

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 150 GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-- 206
           G++QP+  +G++C     +   DA  ++  +   +  +++D +   A K+ G P GI   
Sbjct: 157 GLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPI 216
Query: 207 -----ALYIRRNPRTR---------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAF-RLA 251
                AL + RN RT+         +     G   E      T+A++ I  + EA  ++A
Sbjct: 217 SISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA 276
Query: 252 RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 291
              ++ ++KR +   + LY GL +   +I++  D  +R+P
Sbjct: 277 EEGLENQIKRRIECAQILYEGLGKMGLDIFVK-DPRHRLP 315

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	0.0
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	0.0
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	0.0
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	0.0
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	1e-43
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	5e-42
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	9e-36
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	3e-34
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	1e-32
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	1e-23
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	2e-15
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	2e-13
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	6e-13
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	5e-10
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	6e-10
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	2e-09
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	2e-08
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	3e-08
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	1e-07
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	1e-06
3pj0_A	359	LMO0305 protein; structural genomics, joint center	2e-06
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	2e-06
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	5e-06
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	8e-06
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	1e-05
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	2e-05
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	2e-05
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	2e-05
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	3e-05
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	4e-05
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	5e-05
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	7e-05
1iug_A	352	Putative aspartate aminotransferase; wild type, py	8e-05
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	9e-05
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	3e-04
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	3e-04
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	4e-04
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	6e-04
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	8e-04

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423

 Score =  762 bits (1971), Expect = 0.0
 Identities = 262/399 (65%), Positives = 343/399 (85%), Gaps = 3/399 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSATTP+DPRV +KM+ ++ +   FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 26  LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 85

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 86  REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 145

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           + NG+I L +LE  +  DTILVS+M VNNEIGV+Q I  IGE+CR++G+I+H DA Q+VG
Sbjct: 146 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 205

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++   KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL  
Sbjct: 206 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 265

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEA+R+A+ EM  E++R+  L+ RL+NG+ + IEE+Y+NGD+ +  P+ LN+SF
Sbjct: 266 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSF 324

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 325 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 384

Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH 397
           ID+TI+L++  + +LR+LSPLW+M+K+G+DLN+I+WA H
Sbjct: 385 IDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 423

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382

 Score =  698 bits (1805), Expect = 0.0
 Identities = 155/382 (40%), Positives = 256/382 (67%), Gaps = 7/382 (1%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
            DY++  P+D R+++ M+PY+   FGNP+S  H YG+ A +A+++AR +VA+L+      
Sbjct: 4   FDYTSAKPVDERILEAMLPYMTESFGNPSSV-HSYGFKAREAVQEAREKVAKLVNGGGGT 62

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           +++TSGATE+NNLAI G A    ++GKHI+    EH SV++  + L+  GF V Y+    
Sbjct: 63  VVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK 122

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
            G + +S +++K+  DTILVSV   NNEIG IQP+ EI E+   K    H DA  +VG+I
Sbjct: 123 YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQI 181

Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
           +++++    D+++ S++ IYGPKG+GAL+IR+    +++  I GGG E GLRSG+     
Sbjct: 182 EVDVEKIGADMLTISSNDIYGPKGVGALWIRK--EAKLQPVILGGGQENGLRSGSENVPS 239

Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
           IVG G+A  +  +E +EE +R+  L+ R+ + +++ IEE Y+NG    R+P+N+N+ F++
Sbjct: 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSY 298

Query: 301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           IEGES+++++    I  S+GSAC+S +L+PS+VL A G   E AH ++  T+GR+ T+++
Sbjct: 299 IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED 358

Query: 359 IDFTIKLLKMKVKKLRELSPLW 380
           +D  +++L   +++LR +SPL+
Sbjct: 359 VDRLLEVLPGVIERLRSMSPLY 380

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384

 Score =  684 bits (1767), Expect = 0.0
 Identities = 146/384 (38%), Positives = 223/384 (58%), Gaps = 9/384 (2%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
            D +ATT +D RV+++MI + R ++GNP S  H  G  A   +EKAR +VA+++   P E
Sbjct: 5   FDNNATTRVDDRVLEEMIVFYREKYGNPNSA-HGMGIEANLHMEKAREKVAKVLGVSPSE 63

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           I +TS ATES N  +K  A  ++KR + IIT   EHK+VL++++ L   GF+V Y+   +
Sbjct: 64  IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS 123

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVG 178
            G++ L +LE+ +  DT LVS+M  NNE+G IQP+ ++  + + K    + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           KI  +++  +VD  SFSAHK +GPKG+G  YIR+     I   IHGGG E GLRSGT   
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRK--GVPIRPLIHGGGQERGLRSGTQNV 241

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
             IVG   A  +A  E+ E  K +  L+ +L +GLM      +I   +   +P+ L++SF
Sbjct: 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSF 299

Query: 299 NFIEGESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
             I G +L        I VS+ SACTS      +VL A+G +  +A  +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359

Query: 357 KEIDFTIKLLKMKVKKLRELSPLW 380
           +E+D+ +K ++  +  L       
Sbjct: 360 EEVDYFLKKIEEILSFLDLTGNNR 383

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Length = 432

 Score =  633 bits (1636), Expect = 0.0
 Identities = 127/410 (30%), Positives = 205/410 (50%), Gaps = 38/410 (9%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           MDY+ATTP++P V+  +   ++  +GNP S +++ G  A+  I  AR  +A++I   P++
Sbjct: 22  MDYNATTPLEPEVIQAVTEAMKEAWGNP-SSSYVAGRKAKDIINTARASLAKMIGGKPQD 80

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRG-----------------KHIITVQTEHKSVLDSI 103
           II+TSG TESNNL I      + ++                   H IT   EH S+   +
Sbjct: 81  IIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPL 140

Query: 104 RKL-ENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
             L E+    VT++   K NG + +  +   +   T LV++ML NNE GVI PI EI   
Sbjct: 141 EHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRR 200

Query: 162 CRSKG----------VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
            ++            V+ H DAAQA+GK  +++++  VD ++   HK YGP+ IGALY+R
Sbjct: 201 IKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR 259

Query: 212 RNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 270
              + T +   + GGG E   R GT  T  I G+G+A  L     +     +  ++  L 
Sbjct: 260 GVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLE 319

Query: 271 NGLMESI-EEIYINGDMN--NRIPHNLNISFNFIEGES--LLMAIKDIAVSSGSACTSAS 325
             L     + I++N       R+P+  N S    +     +L   + +  S G++C S  
Sbjct: 320 ERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDH 379

Query: 326 LE-PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR 374
            + PS VL + G   ++A +++R ++GR TT  E+D  ++ LK  V +L 
Sbjct: 380 EDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score =  154 bits (392), Expect = 1e-43
 Identities = 51/377 (13%), Positives = 122/377 (32%), Gaps = 43/377 (11%)

Query: 5   ATTPIDPRVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIW 63
               +       ++ +                        +   N++ + +  D      
Sbjct: 17  TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARV 74

Query: 64  TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNN 121
           T+GA E+    +        K+   ++  +  H S   +    E  G  +  +      +
Sbjct: 75  TNGAREAKFAVMHS----LAKKDAWVVMDENCHYSSYVAA---ERAGLNIALVPKTDYPD 127

Query: 122 GLITLSQLEEKICSDT-----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
             IT     + I         +L  +   +   G +  + +I ++C    V    + A A
Sbjct: 128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA 187

Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKG-IGALYIRRNPRTRIEAQIHG----GGHEYGL 231
           +G++ ++++    D +  S HK     G IG + ++       E  +         E  L
Sbjct: 188 IGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE---WAEIVLRRSEKYKNKEVEL 244

Query: 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 291
              T     I+ +  +F   R  +K   + +   ++      ME +    +  +     P
Sbjct: 245 LGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAE--MEKLGIKQLGDN-----P 297

Query: 292 HNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351
           HN ++ F   E       + +I+  +         E    L++   +      +  F + 
Sbjct: 298 HNHDLMFFHAEV------LYEISKKAKGGRFFLYRE----LKSRKIHGIKPGLTRYFKLS 347

Query: 352 RF-TTEKEIDFTIKLLK 367
            +  +++E+D+ +   K
Sbjct: 348 TYGLSDEEVDYVLNAFK 364

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390

 Score =  150 bits (382), Expect = 5e-42
 Identities = 72/409 (17%), Positives = 134/409 (32%), Gaps = 71/409 (17%)

Query: 2   DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
           ++     +    ++ +         N            ++ I + R  +A+    DP  I
Sbjct: 21  NFGGQGILPTVALEAITAMYGYLQENGPFSIAANQH-IQQLIAQLRQALAETFNVDPNTI 79

Query: 62  IWTSGATESNNLAIKGAAHFYK-KRGKHIITVQTEHKSVL---DSIRKLENDGFRVTYLK 117
             T   T   ++            +G  I+    EH  ++    +I       +R   + 
Sbjct: 80  TITDNVTTGCDI----VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVA 135

Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC----DA 173
              N     + L   +   T LV +  +    G + P+ EI  +CR     +      D 
Sbjct: 136 ATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 195

Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGG------ 226
           AQ+ G + ++    +VD  +F+ HK   GP G+G LYI  +    I     G        
Sbjct: 196 AQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGA 255

Query: 227 -------HEYGLR--SGTLATHQIVGMGEAFR-LARIEMKEEL-KRILFLQKRLYNGLME 275
                   E G R    T A  Q  G+  A +   R    EE  + I    + L+ GL +
Sbjct: 256 KGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ 315

Query: 276 SIEEIYINGDMNNRIPHNLNISFNFIEG----ESLLMAI--KDIAVSSGSACTSASLEPS 329
            +  ++       +      +SF  ++      +++  +  + I +              
Sbjct: 316 -LPHVHCLATSAPQAG---LVSFT-VDSPLGHRAIVQKLEEQRIYL-------------- 356

Query: 330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSP 378
              R +          IR      T E+EI+    L    + +L +  P
Sbjct: 357 ---RTIA-----DPDCIRACCHYITDEEEIN---HL----LARLADFGP 390

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420

 Score =  134 bits (340), Expect = 9e-36
 Identities = 100/406 (24%), Positives = 164/406 (40%), Gaps = 60/406 (14%)

Query: 2   DYSATT--PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DP 58
           D +AT+  P    V++K++ Y      N     H     A  A E  RN+VA+ I A  P
Sbjct: 33  DNAATSQKPR--AVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP 90

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDG 110
           REI++T  ATE+ NL          K G  IIT   EH S   ++        +     G
Sbjct: 91  REIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHS---NLVPWQMVAAKT----G 143

Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170
             + +++        L   +  +   T LV+V+ ++N +G + P  EI +L    G    
Sbjct: 144 AVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVL 203

Query: 171 CDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGG-- 226
            DA Q+     +++Q    D +  S HK+  P GIG LY +      +EA     GGG  
Sbjct: 204 VDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE---ILEAMPPFFGGGEM 260

Query: 227 ----HEYG---------LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNG 272
                              +GT A  + + +G A   L  + M+      + L   L+ G
Sbjct: 261 IAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQG 320

Query: 273 LMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLE 327
           L + I ++ + G            SFN + G      + ++    IA+ SG  CT    +
Sbjct: 321 LGQ-IPQLRLYGPNPKHGDRAALASFN-VAGLHASDVATMVDQDGIAIRSGHHCT----Q 374

Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
           P  + R    +      S R ++  + T++EID  ++ L+    + 
Sbjct: 375 P--LHRLFDAS-----GSARASLYFYNTKEEIDLFLQSLQ-ATIRF 412

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406

 Score =  130 bits (328), Expect = 3e-34
 Identities = 62/404 (15%), Positives = 130/404 (32%), Gaps = 69/404 (17%)

Query: 2   DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
           D  A   I   V   +    R    +     H     +   ++ AR  VA L+ ADP  +
Sbjct: 31  DAPAGMLIPDSVATTVSTAFRRSGASTVGA-HPSARRSAAVLDAAREAVADLVNADPGGV 89

Query: 62  IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLK-PK 119
           +  +      +L  + ++      G  +I  + + ++ +    +     G +V + +   
Sbjct: 90  VLGADRAVLLSLLAEASSSRAGL-GYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI 148

Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
             G +   Q E  I   T LV+V   +  +G +  +  + +L    G +   D + A   
Sbjct: 149 ETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPY 208

Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR---------------NPRTRIEAQIHG 224
             ++I+    D+++ +AH   GP     ++                      R+E     
Sbjct: 209 RLLDIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPARLEI---- 264

Query: 225 GGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILF--------------LQKRL 269
                    G      + G+  +   LA ++      R                 +   L
Sbjct: 265 ---------GVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYL 315

Query: 270 YNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDI-AVSSGSACTS 323
              L  S+  + + G    +IP    +SF  +           +A   I A+++  +   
Sbjct: 316 MVSL-RSLPLVMLIGRPEAQIP---VVSFA-VHKVPADRVVQRLADNGILAIANTGSRV- 369

Query: 324 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
                  VL            ++   +  ++T  E+D  ++ L 
Sbjct: 370 ---LD--VLGVNDVG-----GAVTVGLAHYSTMAEVDQLVRALA 403

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406

 Score =  126 bits (318), Expect = 1e-32
 Identities = 87/407 (21%), Positives = 153/407 (37%), Gaps = 65/407 (15%)

Query: 2   DYSATT--PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DP 58
           D +A+   P   +V+D    + R  +       H     A + +E  R   +  I A   
Sbjct: 28  DSAASAQKPS--QVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA 85

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDG 110
            E+++  G TE  NL      +   + G +II  Q EH +   +I        R     G
Sbjct: 86  EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHA---NIVPWQMLCARV----G 138

Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170
             +  +    +G + L  L       T L+++  V+N +G   P+ E+  L    G    
Sbjct: 139 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198

Query: 171 CDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGGH- 227
            D AQAV    +++Q    D   FS HK+YGP GIG LY++      ++      GGG  
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEA---LLQEMPPWEGGGSM 255

Query: 228 ----EYGLRS-----------GTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYN 271
                    +           GT  T  I+G+G A   ++ + +    +    L     +
Sbjct: 256 IATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALS 315

Query: 272 GLMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASL 326
            L   + ++ + G  N        I+FN +           +    IAV +G  C     
Sbjct: 316 QLES-VPDLTLYGPQN----RLGVIAFN-LGKHHAYDVGSFLDNYGIAVRTGHHCA---- 365

Query: 327 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
            P  ++           +  R ++  + T +E+D  +  L+ ++ +L
Sbjct: 366 MP--LMAYYNVP-----AMCRASLAMYNTHEEVDRLVTGLQ-RIHRL 404

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416

 Score =  100 bits (251), Expect = 1e-23
 Identities = 50/334 (14%), Positives = 110/334 (32%), Gaps = 48/334 (14%)

Query: 12  RVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIWTSGATES 70
             + +    +  ++GN   R+    GW      E+  N +A LI A   E++ T   + +
Sbjct: 43  AALARAQAVIAEEWGNGLIRSWNSAGWRD--LSERLGNRLATLIGARDGEVVVTDTTSIN 100

Query: 71  NNLAIKGAAHFYK------KRGKHIITVQTEHKS---VLDSIRKLENDGFRVTYLKPKNN 121
                   +   +         + I+T  +   +   + + +  +   G+ +  +     
Sbjct: 101 LFKV---LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--- 154

Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
                 +L + I  DT +V +  VN + G +  +  +  L    G +   D A + G + 
Sbjct: 155 ----PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP 210

Query: 182 INIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQIHGG-GHE---------- 228
           +++     D      +K    GP     +++       +   + G  GH           
Sbjct: 211 VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYE 270

Query: 229 -----YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYI 282
                     GT     +  +       A+ +M    ++ L L       + +      +
Sbjct: 271 PSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 330

Query: 283 N----GDMNNRIPHNLNISFNFIEGESLLMAIKD 312
                 +   R  H   +SF   EG +++ A+ D
Sbjct: 331 TLVTPREHAKRGSH---VSFEHPEGYAVIQALID 361

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465

 Score = 76.6 bits (188), Expect = 2e-15
 Identities = 53/299 (17%), Positives = 101/299 (33%), Gaps = 33/299 (11%)

Query: 12  RVVDKMIPYLRVQFGNPASRNHIYGWTAE-KAIEKARNEVAQLIYADPREIIWTSGATES 70
            V   +   L  ++   A+  H  G        E     +  ++ A+ +EI   +  T +
Sbjct: 82  MVKTYLEEELD-KWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140

Query: 71  NNLAIKGAAHFYKKRGKHIITVQTEHKS---VLDSIRKLENDGFRVT-YLKPKNNGLITL 126
            +L +        KR K I+       S    ++S  +L       +  +     G  TL
Sbjct: 141 LHLLMLSFFKPTPKRYK-ILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETL 199

Query: 127 S-----QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
                 ++ EK      ++    V+   G    I  I +  ++KG     D A AVG ++
Sbjct: 200 RIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVE 259

Query: 182 INIQNYKVDLMSFSAHK--IYGPKGIGALYIRRNPRTRIE-AQIHGGGHEY--------- 229
           + + ++ VD   + ++K    G  GI   +I       I+ A +   GHE          
Sbjct: 260 LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNK 319

Query: 230 --------GLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEE 279
                   G R        +  +  +     +  MK   K+ + L   L   +  +  +
Sbjct: 320 LQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGK 378

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 46/315 (14%), Positives = 97/315 (30%), Gaps = 53/315 (16%)

Query: 13  VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEV----AQLIYADPREIIWTSGAT 68
           +   ++P  R         N        K  +    +       L+          SG T
Sbjct: 38  MCSNVLPITRKIVDIFLETNLGD-PGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGT 96

Query: 69  ESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
           E+N +A++   + ++++ +          II   T H S       +        Y   K
Sbjct: 97  EANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIK 153

Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNN----EIGVIQPILEIGELCRSKGVIFHCDAA- 174
            +  I    +++ +    +     ++      E+G I  I E+ ++ +   +  H DAA 
Sbjct: 154 EDYTIDEKFVKDAVEDYDVD---GIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAF 210

Query: 175 ---------QAVGKIDINIQ---NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ 221
                        K  +N +   +  VD ++   HK  + P   G + + ++   +    
Sbjct: 211 GGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGI-LFKDIGYK-RYL 268

Query: 222 IH-----GGGHEYGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQKRLYNG 272
                      +  +   R G                L R   ++ +   +     LY  
Sbjct: 269 DVDAPYLTETRQATILGTRVG----FGGACTYAVLRYLGREGQRKIVNECMENTLYLYKK 324

Query: 273 LMESIEEIYINGDMN 287
           L E+  +  I   +N
Sbjct: 325 LKENNFKPVIEPILN 339

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 68.9 bits (168), Expect = 6e-13
 Identities = 50/319 (15%), Positives = 100/319 (31%), Gaps = 36/319 (11%)

Query: 64  TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG- 122
           T  +T  +      AA   K     +I     HKS + ++  +   G  +  ++   +G 
Sbjct: 155 TPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLDGD 210

Query: 123 --LITLSQLEEKICSDTILVSVMLV-----NNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
              + +  +E  I  +  L +   V              I+EI ++C +  +    + A 
Sbjct: 211 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 270

Query: 176 AVG-----KIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEY 229
           A+      +       Y+VD +  S+ K    P G G +Y   +     E  +   G   
Sbjct: 271 AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYS-TDAEFIKEISLSYPGRAS 329

Query: 230 GLRS-GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288
                 TL +   +G             E +K     +K L   L   + +      ++ 
Sbjct: 330 ATPVVNTLVSLLSMG--------SKNYLELVKNQKNSKKLLDELL-NDLSKKTGGKFLDV 380

Query: 289 RIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348
             P    IS N  +   +   + ++ V +G      +                 H  I  
Sbjct: 381 ESPIASCISVNS-DPVEIAAKLYNLRV-TGPRGIKKTDHFGNCY-----LGTYTHDYIVM 433

Query: 349 TIGRFTTEKEIDFTIKLLK 367
                   ++I  ++  L+
Sbjct: 434 NAAIGVRTEDIVNSVSKLE 452

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 49/251 (19%), Positives = 89/251 (35%), Gaps = 38/251 (15%)

Query: 64  TSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLK-P 118
           TSG TES  LA   A  +    RG     II   T H     +       G ++ +++  
Sbjct: 132 TSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELD 188

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA---- 174
                + L ++++ I  +T+L+     N   G+   I  +G++ +   +  H D+     
Sbjct: 189 PTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSF 248

Query: 175 ----------QAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIH 223
                     + +  +D  +    V  +S   HK  + PKG   +   RN   R+     
Sbjct: 249 IVSFMEKAGYKNLPLLDFRVPG--VTSISCDTHKYGFAPKGSSVIMY-RNSDLRMHQYYV 305

Query: 224 G----GGHEY-----GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 274
                GG        G R G +       M     +      E  + I+    +    + 
Sbjct: 306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATM---VNMGENGYIESCQEIVGAAMKFKKYIQ 362

Query: 275 ESIEEIYINGD 285
           E+I ++ I G+
Sbjct: 363 ENIPDLDIMGN 373

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 58/247 (23%), Positives = 89/247 (36%), Gaps = 33/247 (13%)

Query: 64  TSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
           TSG TES  LA+K         +G      +   + H +   + +     G ++      
Sbjct: 166 TSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYF---GIKLVRTPLD 222

Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
            +    ++ + E I  +T++V+        GV+ PI EI  L    G+  H DA    G 
Sbjct: 223 ADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDAC-LGGF 281

Query: 180 IDINIQNYK------------VDLMSFSAHKI-YGPKGIGALYIR----RNPRTRIEAQI 222
           I    +               V  +S   HK  YG KG   +  R     + +  I A  
Sbjct: 282 ILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADW 341

Query: 223 HGGGHE----YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE 278
            GG +      G R G L+      M     L      +  +RIL    RL  G+  +I 
Sbjct: 342 PGGLYFSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAIP 397

Query: 279 EIYINGD 285
            + I GD
Sbjct: 398 SLKILGD 404

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 46/282 (16%), Positives = 85/282 (30%), Gaps = 32/282 (11%)

Query: 122 GLITLSQLEEKICSDTI----LVSVMLVNNEIG----VIQPILEIGELCRSKGVIFHCDA 173
           G   + +L+E I          +   +  N  G     +  + E+ E+ +  G+    D+
Sbjct: 165 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 224

Query: 174 AQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIGALYIRRNPRT 216
           A+       I      YK               D ++ SA K       G + IR N   
Sbjct: 225 ARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEI 284

Query: 217 RIEAQIHGGGHEYGLRSGTLATHQIVGM--GEAFRLARIEMKEELKRILFLQKRLYNGLM 274
              A+      E  +  G LA   +  M  G         +   + ++ +L  RL    +
Sbjct: 285 FTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGI 344

Query: 275 ESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRA 334
                   +    +       I  +    ++++ A   + + SG               A
Sbjct: 345 PIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINA---LYLESGVRAVEIGSFLLGRDPA 401

Query: 335 LGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMKVKKLRE 375
            G         +R TI R   T   +D+    L   +K+   
Sbjct: 402 TGEQKHADMEFMRLTIARRVYTNDHMDYIADALI-GLKEKFA 442

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 55/349 (15%), Positives = 99/349 (28%), Gaps = 55/349 (15%)

Query: 5   ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI--- 61
             T  D  V   M   +   + +       Y  +A   +    N VA L +A   +    
Sbjct: 50  CQTWDDENVHKLMDLSINKNWIDK----EEYPQSAAIDLR-CVNMVADLWHAPAPKNGQA 104

Query: 62  --IWTSGATESNNLAIKGAAHFYKKRGKH--------IITVQTEHKSVLDSIRKLENDGF 111
               T G++E+  L        ++KR +          +              +  +   
Sbjct: 105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW-HKFARYWDVEL 163

Query: 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC------RSK 165
           R   ++P     +   ++ E    +TI V         G  +    + +           
Sbjct: 164 REIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGI 222

Query: 166 GVIFHCDAA---------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR---- 211
            +  H DAA               D  +    V  +S S HK    P G G +  R    
Sbjct: 223 DIDMHIDAASGGFLAPFVAPDIVWDFRLPR--VKSISASGHKFGLAPLGCGWVIWRDEEA 280

Query: 212 RNPRTRIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQ 266
                       GG    + +   R       Q++     F RL R    +       + 
Sbjct: 281 LPQELVFNVDYLGGQIGTFAINFSRPA----GQVIAQYYEFLRLGREGYTKVQNASYQVA 336

Query: 267 KRLYNGLMES-IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA 314
             L + + +    E    G  +  IP    + F   +GE     + D++
Sbjct: 337 AYLADEIAKLGPYEFICTGRPDEGIPA---VCFKLKDGEDPGYTLYDLS 382

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
           G               +  ++  + +D  +  + +V++E   G++ PI E+G L    G 
Sbjct: 103 GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGK 162

Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIG-------ALYIRRNPRTR-- 217
            +  DA  + G I ++I    +D +  SA+K I G  G          L   +       
Sbjct: 163 TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS 222

Query: 218 --IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEEL----KRILFLQKRLYN 271
             + AQ       +G    T  TH ++   +A  L  +  +  +    +R    Q+ L  
Sbjct: 223 LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQA--LKELAKEGGVAARHQRYQQNQRSLVA 280

Query: 272 GL 273
           G+
Sbjct: 281 GM 282

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 38/256 (14%), Positives = 79/256 (30%), Gaps = 36/256 (14%)

Query: 64  TSGATESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRVT 114
           T G++E+  LA       ++ + K          I+T         +   +      +  
Sbjct: 123 TVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCW-EKFARYFEVELKEV 181

Query: 115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG------VI 168
            L      ++   Q  + +  +TI V+ +L +   G  + +  + +L   K         
Sbjct: 182 KLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240

Query: 169 FHCDAA-------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR----RNPRT 216
            H DAA           +++ + +   V  ++ S HK      GIG +  R         
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300

Query: 217 RIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNG 272
                  G     + L   +  +    Q   +    RL     +  ++        L  G
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQL---IRLGHEGYRNVMENCRENMIVLREG 357

Query: 273 LMESIEEIYINGDMNN 288
           L ++     ++ D   
Sbjct: 358 LEKTERFNIVSKDEGV 373

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 54/356 (15%), Positives = 106/356 (29%), Gaps = 53/356 (14%)

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHII---TVQTEHKSVLDS---IRKLENDGFR 112
           + I+ T     + NL          K G+++       T       +      +  D   
Sbjct: 91  KHIVPTHQGRGAENLLS----QLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAH 146

Query: 113 VTYLKPKNNGLITLSQLEEKICSDTI----LVSVMLVNNEIG----VIQPILEIGELCRS 164
              L     G I L +L++ I          + + +  N  G     +  +  + EL  +
Sbjct: 147 DAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEA 206

Query: 165 KGVIFHCDAAQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIGA 207
            G+    DA + V     I    Q ++               D  + S  K      IG 
Sbjct: 207 HGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV-NIGG 265

Query: 208 LYIRRNP----RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL 263
                +       +    ++ G   YG  +G       +G+ EA +   IE    +K++ 
Sbjct: 266 FLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIE--HRVKQVR 323

Query: 264 FLQKRLYNGLMESIEEIYING---DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSA 320
           +L  +L    +  +E +  +    D      H     F      + +     +       
Sbjct: 324 YLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGI 383

Query: 321 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMKVKKLRE 375
            ++     +          E     +R TI R   T   +D     +  K+ + +E
Sbjct: 384 ISAGRNNVTGEHHR--PKLET----VRLTIPRRVYTYAHMDVVADGII-KLYQHKE 432

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 58/391 (14%), Positives = 118/391 (30%), Gaps = 125/391 (31%)

Query: 38  TAE-KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH 96
             E   I  +++ V+         + WT  + +           F ++       ++  +
Sbjct: 48  KEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEE-----MVQKFVEE------VLRINY 91

Query: 97  KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156
           K ++  I+  +          P     + + Q + ++ +D  + +   V+      QP L
Sbjct: 92  KFLMSPIKTEQRQ--------PSMMTRMYIEQRD-RLYNDNQVFAKYNVSRL----QPYL 138

Query: 157 EI----GELCRSKGVIFH--------CDAAQAVGKIDINIQNYKV-DLMSFSAHKIYGPK 203
           ++     EL  +K V+            A            +YKV   M F   KI+   
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-------LSYKVQCKMDF---KIF--- 185

Query: 204 GIGALYI----RRNPRTRIE------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253
                ++      +P T +E       QI          S  +            +L   
Sbjct: 186 -----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------------KLRIH 228

Query: 254 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDI 313
            ++ EL+R L   K   N L+       +  ++ N      N +FN      +L+  +  
Sbjct: 229 SIQAELRR-LLKSKPYENCLL-------VLLNVQN--AKAWN-AFNL--SCKILLTTRFK 275

Query: 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
            V+                  L       H S+       T ++     +K L  + + L
Sbjct: 276 QVT----------------DFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 374 RE----LSPL-----WDMHKEGIDLNTIK-W 394
                  +P       +  ++G+   T   W
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGL--ATWDNW 347

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 30/171 (17%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
           G  V  ++   +   +L  L   I        + L + +   G++QP+  +G++C     
Sbjct: 116 GADVRTIEGPPDRPFSLETLARAIELHQPKC-LFLTHGDSSSGLLQPLEGVGQICHQHDC 174

Query: 168 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 213
           +   DA  ++  +   +  +++D               ++  +     PK +  +  RR 
Sbjct: 175 LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPIS---ISPKALDVIRNRRT 231

Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
                     +     G   E      T+A++ I  + EA       + EE
Sbjct: 232 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ----IAEE 278

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Length = 359

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 40/221 (18%), Positives = 72/221 (32%), Gaps = 54/221 (24%)

Query: 64  TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-----TYLKP 118
            SG T +  +A++      +K  + +      H      +   E DG +        L  
Sbjct: 70  PSG-TMAQQIALR--IWADRKENRRVAYHPLSH------LEIHEQDGLKELQQITPLLLG 120

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAA 174
             N L+T+  ++         V + L   EI G +     + +I E C  +G+  H D A
Sbjct: 121 TANQLLTIDDIKSLRE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGA 179

Query: 175 ---QAVGKIDINIQNY--KVDLMSFSAHKIYGPKGIGAL----------YIRRNPRTRIE 219
              +       + +      D +  S    Y  KGIG +          +++     +  
Sbjct: 180 RLWEITPFYQKSAEEICALFDSVYVS---FY--KGIGGIAGAILAGNDDFVQEAKIWK-- 232

Query: 220 AQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLAR 252
            + +GG     L                +I  M E F  A+
Sbjct: 233 -RRYGG----DLISLYPYILSADYYFEKRIGKMAEYFEAAK 268

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 37/181 (20%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
              V  ++     + T  Q+E+ +      + ++ V  +    ++QP+ E+GE+CR    
Sbjct: 111 RAEVHTIEVPWGEVFTPDQVEDAVKRIRPRL-LLTVQGDTSTTMLQPLAELGEICRRYDA 169

Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYI----------RRNPRT 216
           +F+ DA  ++G   +    + +D +S    K  G P G   + +          R+    
Sbjct: 170 LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEE 229

Query: 217 RIEAQIHGGGHEYGLRS-------------------GTLATHQIVGMGEAFRLARIEMKE 257
            I    H  G E  + S                    T AT  + G  E  RL    + +
Sbjct: 230 GIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL----ILQ 285

Query: 258 E 258
           E
Sbjct: 286 E 286

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 30/171 (17%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
           G  V  +K K    ++L ++ + +      V + L   +   GV+Q +  +G LC     
Sbjct: 117 GADVRVVKSKVGQSLSLDEIRDALLIHKPSV-LFLTQGDSSTGVLQGLEGVGALCHQHNC 175

Query: 168 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 213
           +   D   ++G   + +  +++D               ++  +   +  + +     R  
Sbjct: 176 LLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVS---FSHRAVERYKRRNT 232

Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
                     +     G      +   T+++  + G+ EA  +      EE
Sbjct: 233 KVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM----ACEE 279

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 30/171 (17%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
              V  L+P     +   ++EE++      + V L + E   GV +P+ ++    R    
Sbjct: 100 PVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL-VALTHVETSTGVREPVKDVINKIRKYVE 158

Query: 168 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 213
           +   D   +VG  ++  + + VD         L               PK +  L  + +
Sbjct: 159 LIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLL---LSPKALSILDSQNS 215

Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
                         + G          T   H I+ + EAFRL    +++E
Sbjct: 216 IAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL----IEKE 262

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 20/165 (12%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
              +  ++   N  I    + + + +   +  V + +++   G I PI  IG L  + G 
Sbjct: 106 SPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGA 165

Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-------ALYIRRNPRTRIE 219
               DA  + G +  + ++ K D+     +K  G P G+        A    +       
Sbjct: 166 YLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPR 225

Query: 220 ------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
                                T +  +I G+  A  L       E
Sbjct: 226 ASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL----YLNE 266

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 26/176 (14%)

Query: 124 ITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
           +    L++ +  +  + +V +  NE   GV+ P+ E+ ++ +    +   DA  A+G  D
Sbjct: 132 VKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD 191

Query: 182 INIQNYKVDLMSFSAHKIYG-PKGIGAL--------YIRRNPRTR------IEAQIHGGG 226
           I    + +D++  S+ K +G P G+              + P         +  +     
Sbjct: 192 IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251

Query: 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEE--LKRILFLQKRLYNGLMESIEEI 280
                   T    Q+ G+  A R+    +++    ++ L + ++    + E + EI
Sbjct: 252 EST---PSTPPMPQVFGINVALRI----IEKMGGKEKWLEMYEKRAKMVREGVREI 300

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 16/160 (10%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
           G     L       +    +   +      + V LV+ E   GV+ P   IG L +  G 
Sbjct: 97  GLDPEVLDFPPGEPVDPEAVARALKRRRYRM-VALVHGETSTGVLNPAEAIGALAKEAGA 155

Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEA------ 220
           +F  DA   +G +  +++   VD     + K    P G+  +      R           
Sbjct: 156 LFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYL 215

Query: 221 --QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
                    E G    T        + EA  L    + EE
Sbjct: 216 DLARVAEHWERGGYHHTTPVLLHYALLEALDL----VLEE 251

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 33/171 (19%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
           G  V  +      + +L +L   + +    + + LV+ E   G  QP+  +GELCR  G 
Sbjct: 132 GADVRTISKPWGEVFSLEELRTALETHRPAI-LALVHAETSTGARQPLEGVGELCREFGT 190

Query: 168 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 213
           +   D   ++G + I +  + VDL               S         + I  L  RR 
Sbjct: 191 LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFT---MSSRAIEKLQRRRT 247

Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
                     +  +  G    Y     T   +    + EA RL    + +E
Sbjct: 248 KVANWYLDMNLLGKYWGSERVY---HHTAPINLYYALREALRL----IAQE 291

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 30/171 (17%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
           G RV  +  K     TL ++EE +     ++ + LV+ E   GV+QP+   GELC     
Sbjct: 121 GARVHQMIKKPGEHYTLQEVEEGLAQHKPVL-LFLVHGESSTGVVQPLDGFGELCHRYQC 179

Query: 168 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 213
           +   D+  ++G + I +    +D+              +S  +   +  K    +Y R+ 
Sbjct: 180 LLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLIS---FNDKAKYKVYSRKT 236

Query: 214 PRTR------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
                       A++ G   E  +   T     +  + E+  L    + E+
Sbjct: 237 KPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLAL----IAEQ 283

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 23/151 (15%)

Query: 142 VMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK- 198
           +++  +E    V+   + IGE C+   + F CD   A      N+     D+M   + K 
Sbjct: 148 LLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKV 207

Query: 199 IYGPKGIGALYIRRNPRTRIEA----------QIHGGGHEYGLRSGTLATHQIVGMGEAF 248
           +  P GI  + +      R+E           +      E G    T A   ++ + E  
Sbjct: 208 LACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERL 267

Query: 249 RLARIEMKEE------LKRILFLQKRLYNGL 273
           +    E+K+       + RI          +
Sbjct: 268 K----EIKKHGGADAEVARIASQAADFRAKI 294

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
           G  V  L+ +   +     +  +I      + V +V+ E   G I P+  IGE CR++  
Sbjct: 109 GANVHMLECEWGTVFDPEDIIREIKKVKPKI-VAMVHGETSTGRIHPLKAIGEACRTEDA 167

Query: 168 IFHCDAAQAVGKIDINIQNYKVD 190
           +F  DA   +G  ++ +  +K+D
Sbjct: 168 LFIVDAVATIGGCEVKVDEWKID 190

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 49/365 (13%), Positives = 105/365 (28%), Gaps = 88/365 (24%)

Query: 62  IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKL 106
           +  S  +ES  +A+  A        K       E               H SV  +    
Sbjct: 149 VLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS 208

Query: 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGE 160
                ++ +L   +N  +    L++ I  D    LV V +        +     + E+G 
Sbjct: 209 ---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265

Query: 161 LCRSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRN 213
           +C  +G+  H DAA A    +    + +       D  +F+  K +         ++ ++
Sbjct: 266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWV-KD 324

Query: 214 PRTRIEA---------QIHGGGH----EYGLRSG----------TLATHQIVGMGEAFRL 250
                +            + G       + +              + +  +  +    R 
Sbjct: 325 KYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVR- 383

Query: 251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310
              EM +  + ++               EI     +         + F      SL   +
Sbjct: 384 HGTEMAKYFESLVRNDPSF---------EIPAKRHLG-------LVVFRLKGPNSLTENV 427

Query: 311 KDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKM 368
                 +G      A+++   ++              RFT+  +FTT  +I     L++ 
Sbjct: 428 LKEIAKAGRLFLIPATIQDKLII--------------RFTVTSQFTTRDDILRDWNLIRD 473

Query: 369 KVKKL 373
               +
Sbjct: 474 AATLI 478

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 Length = 352

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 16/151 (10%)

Query: 142 VMLVNNE--IGVIQPILEIGELCRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 197
           ++LV++E   G +  +  +    + K    +   D   ++   ++ ++   VD  +  + 
Sbjct: 125 LLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQ 184

Query: 198 KIYG-PKGIGALYIRRNPRTRIEA-------QIHGGGHEYGLRSGTLATHQIVGMGEAFR 249
           K    P G+G + +      R++               + G  + T A + ++ +     
Sbjct: 185 KGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLE 244

Query: 250 LARIEMKEELKRILFLQKRLYNGLMESIEEI 280
                +   L+  L L+      L    EE 
Sbjct: 245 E----VLPRLEEHLALKAWQNALLYGVGEEG 271

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* Length = 467

 Score = 43.5 bits (102), Expect = 9e-05
 Identities = 63/370 (17%), Positives = 103/370 (27%), Gaps = 73/370 (19%)

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD----------------SIR 104
            I T     +  + I        K+ +    +                         ++R
Sbjct: 92  TIPTHQGRGAEQIYIPVLI----KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVR 147

Query: 105 KLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEI-GVIQP---IL 156
            +       T ++    G   L  LE  I     ++   +   + +N   G       + 
Sbjct: 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLK 207

Query: 157 EIGELCRSKGVIFHCDAA---QAVGKIDINIQNYK--------------VDLMSFSAHKI 199
            +  + +   +    D+A   +    I      YK               D+++ SA K 
Sbjct: 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267

Query: 200 YGPKGIGAL------YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253
                 G L      +       R    +  G   YG   G       VG+ +   L  +
Sbjct: 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWL 327

Query: 254 EMKEELKRILFLQKRLYNGLMESIEEIYING------DMNNRIPHNLNISFNFIEGESLL 307
                  RI  +Q  L +GL E        G      D    +PH     F        L
Sbjct: 328 A-----YRIAQVQ-YLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACEL 381

Query: 308 MAIKDI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKL 365
             +  I AV  GS       +        G         +R TI R T T+  +DF I+ 
Sbjct: 382 YKVAGIRAVEIGSFLLGRDPKT-------GKQLPCPAELLRLTIPRATYTQTHMDFIIEA 434

Query: 366 LKMKVKKLRE 375
            K  VK+   
Sbjct: 435 FK-HVKENAA 443

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 53/365 (14%), Positives = 105/365 (28%), Gaps = 90/365 (24%)

Query: 64  TSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKLEN 108
              A+E+  +A+  A     +R +      T+               H SV  +      
Sbjct: 145 QGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG-- 202

Query: 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGELC 162
            G ++  +       +  S L+E +  D    L+   +V             +LE+G +C
Sbjct: 203 -GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC 261

Query: 163 RSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRNPR 215
             + +  H DAA A    I    ++        D  +F+ HK +       A+++ +   
Sbjct: 262 HEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV-KRRT 320

Query: 216 TRIEA---------QIHGGGH------EYGLRSG----------TLATHQIVGMGEAFRL 250
               A           H G         + L  G              + + G+    R 
Sbjct: 321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR- 379

Query: 251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310
             +++  E +  +    R          E+     +         + F     + L  A+
Sbjct: 380 KHVQLSHEFEAFVLQDPRF---------EVCAEVTLG-------LVCFRLKGSDGLNEAL 423

Query: 311 KDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKM 368
            +   S+         L   +VL              RF I  R      +    + ++ 
Sbjct: 424 LERINSARKIHLVPCRLRGQFVL--------------RFAICSRKVESGHVRLAWEHIRG 469

Query: 369 KVKKL 373
              +L
Sbjct: 470 LAAEL 474

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Length = 715

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 22/150 (14%)

Query: 39  AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 98
                ++A   +A++  AD R  + T+G + +N +    +A      G  I+  +  HKS
Sbjct: 193 HSGPHKEAEQYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKS 247

Query: 99  VLDSIRKLENDGFRVTYLKPKNN-----GLITLSQLEEKICSDTI--------LVSVMLV 145
           +   +           Y +P  N     G I  S+ +    +  +         V  ++ 
Sbjct: 248 LTHLMMMS---DVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVIT 304

Query: 146 N-NEIGVIQPILEIGELCRSKGVIFHCDAA 174
           N    G++     I +    K + F     
Sbjct: 305 NSTYDGLLYNTDFIKKTLDVKSIHFDSAWV 334

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Length = 357

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 41/162 (25%)

Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDA 173
              + L+TL +++     D   + + L   EI GV      +  I   CR +G+  H D 
Sbjct: 119 GAADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDG 176

Query: 174 A---QAVGKIDINIQNY--KVDLMSFSAHKIYGPKGIGAL----------YIRRNPRTRI 218
           A   + +   +          D +  S    Y  KG+G +          + +     + 
Sbjct: 177 ARLFEMLPYYEKTAAEIAGLFDSIYIS---FY--KGLGGIAGAILAGPAAFCQTARIWK- 230

Query: 219 EAQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLAR 252
             + +GG     L                +   MG+ +  A+
Sbjct: 231 --RRYGG----DLISLYPYIVSADYYYELRKDRMGQYYEQAK 266

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* Length = 730

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 26/156 (16%)

Query: 39  AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 98
            E     A    A++  AD +      G++ +NN             G  ++  +  HKS
Sbjct: 171 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKS 225

Query: 99  VLDSIRKLENDGFRVTYLKPKNN-----GLITLSQLEEKICSDTILVS------------ 141
           V +S   +   G R  YL+   N     G I  S  +EK   +                 
Sbjct: 226 VYNSALAMA--GGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFR 283

Query: 142 -VMLVN-NEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
             ++      G I    E+ +           D+A 
Sbjct: 284 LAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAW 319

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 27/155 (17%)

Query: 39  AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 98
              A  ++    A++  AD R      G + SN   ++            ++  +  HKS
Sbjct: 203 HTGAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKS 257

Query: 99  VLDSIRKLENDGFRVTYLKPKNNGL----------ITLSQLEEKI--------CSDTILV 140
           +   +      G +  Y+ P  N            +    L++KI         +     
Sbjct: 258 IEQGLMLT---GAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPS 314

Query: 141 SVMLVN-NEIGVIQPILEIGELCRSKGVIFHCDAA 174
             ++ N    GV     E  +L        H D A
Sbjct: 315 YCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEA 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	100.0
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	100.0
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	100.0
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	100.0
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	100.0
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	100.0
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	100.0
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	100.0
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	100.0
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	100.0
1iug_A	352	Putative aspartate aminotransferase; wild type, py	100.0
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	100.0
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	100.0
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	100.0
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	100.0
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	100.0
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	100.0
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	100.0
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	100.0
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	100.0
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	100.0
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	100.0
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	100.0
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	100.0
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	100.0
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	100.0
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	100.0
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	100.0
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	100.0
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	100.0
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	100.0
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	100.0
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	100.0
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	100.0
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	100.0
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	100.0
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	100.0
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
3ele_A	398	Amino transferase; RER070207001803, structural gen	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	100.0
2fnu_A	375	Aminotransferase; protein-product complex, structu	100.0
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
1svv_A	359	Threonine aldolase; structural genomics, structura	100.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	100.0
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	100.0
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	100.0
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	100.0
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	100.0
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	100.0
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	100.0
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	100.0
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	100.0
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	100.0
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	100.0
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	100.0
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	100.0
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	100.0
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	100.0
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	100.0
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	100.0
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	100.0
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	100.0
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	100.0
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	100.0
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.98
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.98
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.98
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.98
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.98
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.98
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.98
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.98
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.98
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.97
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.97
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.97
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.97
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.97
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.97
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.97
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.97
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.97
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.97
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.97
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.97
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.97
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.97
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.97
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.97
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.97
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.97
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.97
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.97
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.97
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.97
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.97
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.97
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.97
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.97
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.97
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.97
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.97
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.97
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.97
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.97
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.97
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.97
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.97
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.97
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.97
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.97
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.97
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.97
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.97
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.97
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.96
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.96
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.96
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.96
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.96
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.96
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.96
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.96
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.96
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.96
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.96
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.96
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.96
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.96
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.96
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.96
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.96
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.96
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.96
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.96
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.96
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.96
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.96
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.96
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.96
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.95
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.95
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.92
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.95
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.95
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.95
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.95
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.95
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.95
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.95
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.95
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.95
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.95
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.95
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.95
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.94
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.94
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.94
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.94
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.94
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.94
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.94
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.94
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.94
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.94
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.94
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.94
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.94
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.94
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.94
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.94
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.94
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.93
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.93
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.93
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.93
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.93
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.93
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.93
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.92
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.92
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.92
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.92
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.92
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.92
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.92
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.91
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.91
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.9
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.9
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.9
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.9
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.89
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.88
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.87
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.76
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.84
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.77

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=100.00  E-value=3.8e-51  Score=389.05  Aligned_cols=396  Identities=66%  Similarity=1.121  Sum_probs=342.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHh--hccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLR--VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA   78 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l   78 (397)
                      ||+++++++|+.+++++.+.+.  ..+++|....+..++...+...+++++++++++++++++++++|+++|+.+++.++
T Consensus        26 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l  105 (423)
T 3lvm_A           26 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGA  105 (423)
T ss_dssp             CBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred             ecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHH
Confidence            6889999999999999999988  66777766456667777889999999999999999889999999999999999988


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ...+.++||+|+++.++|+++...+..+...|.+++.+|.++++.+|+++|++++++++++|++++++||||.+.|+++|
T Consensus       106 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i  185 (423)
T 3lvm_A          106 ANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAI  185 (423)
T ss_dssp             HHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHH
T ss_pred             HHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHH
Confidence            85444579999999999999998887776669999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
                      .++|++||++||+|++++.+..+.+...+++|++++|+||++|+.|+|+++++++....+.+...++.....+..++++.
T Consensus       186 ~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (423)
T 3lvm_A          186 GEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV  265 (423)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCH
T ss_pred             HHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCcccccccCCCCCH
Confidence            99999999999999999988887777777899999999998888889999999888777777766665555677788898


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCCcEeccc
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG  318 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g  318 (397)
                      ..+.++.++++.+.+.++++.+++.++++++.+.|++ ++++.+..++....+.++.+.+++.+..++...|..+.+.+|
T Consensus       266 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~v~~g  344 (423)
T 3lvm_A          266 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSG  344 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTTEECBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhhheeccC
Confidence            9999998899988777889999999999999999988 889998877655556778888877788888888888899999


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccchhhhccccccccccccC
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH  397 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (397)
                      ..|.+....++..+..+|.......++|||+++..++++++++++++|+++++++++.+|.|.+.|++.|++++||+||
T Consensus       345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (423)
T 3lvm_A          345 SACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH  423 (423)
T ss_dssp             CC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTSSHHHHHTTSCCCSCC------
T ss_pred             ccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhccCccchhhhcccccCchhhhcC
Confidence            9998877777788888888766667999999998899999999999999999999999999999999999999999998

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=100.00  E-value=1.6e-47  Score=358.74  Aligned_cols=376  Identities=41%  Similarity=0.767  Sum_probs=322.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.+++++.+.+...+++|+. .+..++...+...+++++++++++++++++++++|+++|+.+++.++..
T Consensus         4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~   82 (382)
T 4hvk_A            4 FDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAM   82 (382)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred             ecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhh
Confidence            799999999999999999999887788887 7777788889999999999999999888899999999999999998874


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                      .+.++||+|+++.++|+++...+..+...|.+++.+|.++++.+|+++|++++++++++|++++++||||.+.|+++|.+
T Consensus        83 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~  162 (382)
T 4hvk_A           83 RNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISE  162 (382)
T ss_dssp             HHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHH
T ss_pred             hhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHH
Confidence            34458899999999999999988887777999999999988899999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhH
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ  240 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (397)
                      +|++||+ +|+|++|+.+..+.+....++|++++|+||++|+.|+|+++++++.  .+.+...++.....+..++++...
T Consensus       163 l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  239 (382)
T 4hvk_A          163 VLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPS  239 (382)
T ss_dssp             HHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHH
T ss_pred             HHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHH
Confidence            9999999 9999999988877776666889999999998888889999999765  555566666556667788889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEeccc
Q psy8850         241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSG  318 (397)
Q Consensus       241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g  318 (397)
                      +.++.+++++..++++++.+++.++++++.+.|++ ++++.+..++....++++.+.+++.+..++.+.|.  ||.+.+|
T Consensus       240 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g  318 (382)
T 4hvk_A          240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTG  318 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeC
Confidence            99998999887778899999999999999999998 88998887655455567888888777888888886  9999999


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccch
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWD  381 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~  381 (397)
                      ..|.+....++..+..+|.......++|||+++..++++++++++++|+++++++++.+|.|.
T Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~  381 (382)
T 4hvk_A          319 SACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR  381 (382)
T ss_dssp             --------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred             CccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            888776555666777888776555689999999989999999999999999999999988774

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=100.00  E-value=1.6e-46  Score=352.32  Aligned_cols=377  Identities=41%  Similarity=0.764  Sum_probs=314.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.|++++.+.+...++++.+ .|..+....+...++++++++++|++++++++|+|+++|+.+++.++..
T Consensus         4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~   82 (382)
T 4eb5_A            4 FDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAM   82 (382)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred             eccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHh
Confidence            699999999999999999999876667765 5666666678899999999999999888999999999999999998863


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                      .+.++||+|++++++|+++...+..+...|.+++.+|.++++.+|+++|++++++++++|++++++||||.+.|+++|.+
T Consensus        83 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~  162 (382)
T 4eb5_A           83 RNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISE  162 (382)
T ss_dssp             HHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHH
T ss_pred             hccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHH
Confidence            33257899999999999998888776556999999999888889999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhH
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ  240 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (397)
                      +|++||++ |+|++|+++..++++..++.|++++|+||++|+.|+|+++++++.  .+.+...++.....+..++++...
T Consensus       163 l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~  239 (382)
T 4eb5_A          163 VLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPS  239 (382)
T ss_dssp             HHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHH
T ss_pred             HHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEcccc--ccCceecCCCccccccCCCccHHH
Confidence            99999999 999999988766665555789999999998888889999998763  233333333333345567788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEeccc
Q psy8850         241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSG  318 (397)
Q Consensus       241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g  318 (397)
                      +.++.++++.+.++++++.+++.++++++.+.|++ ++++.+..++....+.++.+.+++.+..++.+.|.  ||.+.+|
T Consensus       240 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g  318 (382)
T 4eb5_A          240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTG  318 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCC
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEecc
Confidence            88888899988778889999999999999999998 88888776543233557778887667778888776  9999999


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccchh
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDM  382 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~  382 (397)
                      ..|.+....++..++.+|.......+++||+++..++++++++++++|+++++++++.++.|++
T Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~  382 (382)
T 4eb5_A          319 SACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYRR  382 (382)
T ss_dssp             CGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCTTC--
T ss_pred             ccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            8887755555667777776544456899999998889999999999999999999999998853

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=100.00  E-value=8.9e-44  Score=333.73  Aligned_cols=370  Identities=39%  Similarity=0.627  Sum_probs=295.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++.+++|+.+++++.+.+...+.++.. .+..++...+...++++.+++++|++++++++++|+++|+.+++.++..
T Consensus         5 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~   83 (384)
T 1eg5_A            5 FDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAE   83 (384)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred             EecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhh
Confidence            689999999999999999999876667766 6677777788999999999999999888999999999999999998862


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                      ...++||+|++++++|+++...+..+...|.+++.+|.++++.+|+++|++++++++++|++++++||||.+.|+++|.+
T Consensus        84 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~  163 (384)
T 1eg5_A           84 TFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTR  163 (384)
T ss_dssp             HTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHH
T ss_pred             hccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHH
Confidence            11147899999999999998887655556999999999888889999999999999999999999999999999999999


Q ss_pred             HHHhcC--cEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850         161 LCRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       161 l~~~~g--i~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
                      +|++||  +++|+|++|+++..+.++..++.|++++|+||++|+.|+|+++++++.  .+.+.+.++.....+..++.+.
T Consensus       164 l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  241 (384)
T 1eg5_A          164 IVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNV  241 (384)
T ss_dssp             HHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCH
T ss_pred             HHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC--ccccccccCcccccccCCCCCh
Confidence            999999  999999999987766666666799999999998888789999998765  2233333322222345567788


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEec
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVS  316 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~  316 (397)
                      ..+.++.++++...++++++.+++.++++++.+.|++  +++.+..++....+.++.+.+++.+..++.+.|.  ||.+.
T Consensus       242 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~  319 (384)
T 1eg5_A          242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVS  319 (384)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT--TTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECB
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--CCeEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEe
Confidence            8888888889887667889999999999999999998  6787776543334567788877667778887776  99999


Q ss_pred             ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +|..|.+....++..++.+|.......+++||+++..++++++++++++|+++++++++
T Consensus       320 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  378 (384)
T 1eg5_A          320 TSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL  378 (384)
T ss_dssp             C------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred             ccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            99877654444455666666653334589999999888999999999999999987754

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=100.00  E-value=2.2e-44  Score=339.86  Aligned_cols=368  Identities=40%  Similarity=0.623  Sum_probs=295.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.+++++.+.+...++++.. .+..++...+...+++++++++++++++++++++|+++|+.+++.++..
T Consensus        24 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~  102 (400)
T 3vax_A           24 LDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAP  102 (400)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHH
T ss_pred             ecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHH
Confidence            689999999999999999999877777776 6666777778899999999999999888999999999999999998863


Q ss_pred             hhccCCC-EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHH
Q psy8850          81 FYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        81 ~~~~~g~-~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                      ...++|| +|+++.++|+++...+..+...|.+++.+|.++++.+|+++|++++++++++|++++++||||.+.|+++|.
T Consensus       103 ~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~  182 (400)
T 3vax_A          103 YGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELA  182 (400)
T ss_dssp             HHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHH
T ss_pred             hhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHH
Confidence            3335789 999999999999998888766799999999998899999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEE-EecCCC----CccccccccCCccccccCC
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALY-IRRNPR----TRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~  234 (397)
                      ++|++||+++|+|++|+.+..+.++..+ +|++++|+||++|+.|+|+++ ++++..    ..+.+...++.....+..+
T Consensus       183 ~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (400)
T 3vax_A          183 QQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPG  261 (400)
T ss_dssp             HHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCS
T ss_pred             HHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCceEEEEEecchhccccccccCceecCCCceeeeecC
Confidence            9999999999999999988887777766 999999999988888899999 887322    2444555555555567788


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-Cc
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-DI  313 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~i  313 (397)
                      +++...++++.++++.+.++++++.+++.++++++.+.|+  .+++.+..++....++++.+.+++.+..++.+.|. ||
T Consensus       262 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~gi  339 (400)
T 3vax_A          262 TLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA--STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLKDLV  339 (400)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT--TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC--CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhcCc
Confidence            8899999999899998877889999999999999999998  58888887655445567888888777777777775 88


Q ss_pred             EecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHHH
Q psy8850         314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+.+|..|.+....++..+..+|.......++|||++ +..++++++++++++|++++++
T Consensus       340 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          340 AVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             HHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred             EEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence            8888887776555556677778877655569999999 8888999999999999988753

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=100.00  E-value=6.8e-42  Score=323.32  Aligned_cols=359  Identities=22%  Similarity=0.328  Sum_probs=291.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++.+++|+.+++++.+.+.....++++..+..++...+...++++.++++++. ++++|++++|+|+|+.+++.++.
T Consensus        27 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~  106 (406)
T 1kmj_A           27 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWG  106 (406)
T ss_dssp             CCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH
T ss_pred             ecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhh
Confidence            67888888899999999999988666776544555666778899999999999999 67789999999999999999983


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ....++|++|+++.++|++....+..+. ..|.+++.+|.++++.+|++++++++++++++|++++++||||.+.|+++|
T Consensus       107 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i  186 (406)
T 1kmj_A          107 NSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEM  186 (406)
T ss_dssp             HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHH
T ss_pred             hhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHH
Confidence            1111789999999999998876544332 239999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc-----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----------  227 (397)
                      .++|++||+++|+|++|+.+..++++...++|++++|+||.+|+.|+|+++++++..+.+.+...++..           
T Consensus       187 ~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (406)
T 1kmj_A          187 ITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTT  266 (406)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEE
T ss_pred             HHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHhhcCCcccCCCceeecccccccc
Confidence            999999999999999999887666655567999999999966888899999987766666554443321           


Q ss_pred             ----cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC
Q psy8850         228 ----EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE  302 (397)
Q Consensus       228 ----~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (397)
                          ...+..++++..+++++.++++.+.+ +++++.+++.++++++.+.|++ ++++.+..+.  ..++++.+.+++.+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~--~~~~~~~~~~~~~~  343 (406)
T 1kmj_A          267 WTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQ--NRLGVIAFNLGKHH  343 (406)
T ss_dssp             ECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEESCT--TCCSEEEEEETTCC
T ss_pred             cCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCC--CcCCEEEEEECCCC
Confidence                12355678888888888888888764 6888999999999999999999 8888887653  12556667776666


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..++.+.|.  ||.+.+|..|.+      ...+.+|.     .+++||+++.+++++|+++++++|+++++.+
T Consensus       344 ~~~~~~~l~~~gi~v~~g~~~~~------~~~~~~g~-----~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          344 AYDVGSFLDNYGIAVRTGHHCAM------PLMAYYNV-----PAMCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             HHHHHHHHHHTTEECEEECTTCH------HHHHHTTC-----SCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCcEEEeccccch------HHHHhcCC-----CCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence            777877775  999999876653      22223332     3889999999899999999999999998765

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=100.00  E-value=1e-40  Score=316.66  Aligned_cols=363  Identities=25%  Similarity=0.357  Sum_probs=286.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||++..+++|+.+++++.+.+.....++++..+.++....+...++++.++++++. +++++++++|+++|+.+++.++.
T Consensus        32 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~  111 (420)
T 1t3i_A           32 LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWG  111 (420)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH
T ss_pred             ecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhh
Confidence            57777788899999999999987666665423444444467889999999999999 67789999999999999999982


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ....++|++|+++.++|++....+..+. ..|.+++.+|.+.++.+|++++++++++++++|++++++||||.+.|+++|
T Consensus       112 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i  191 (420)
T 1t3i_A          112 MNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEI  191 (420)
T ss_dssp             HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred             hcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHH
Confidence            1111789999999999999644332221 229999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc-----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----------  227 (397)
                      .++|++||+++|+|++|+.+..++++..+++|++++|+||++|+.|+|+++++++..+.+.+...++..           
T Consensus       192 ~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (420)
T 1t3i_A          192 AQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT  271 (420)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEE
T ss_pred             HHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCceEEEEEchHHHhhcCceecCCCccccccccccCC
Confidence            999999999999999999887665666667999999999987887899999987765555554433321           


Q ss_pred             ---cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEecCC
Q psy8850         228 ---EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNFI  301 (397)
Q Consensus       228 ---~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  301 (397)
                         ..++..++++..+.+++.++++.+.+ +++++.+++.++++++.+.|++ ++++.+..+...  ..+.++.+.+++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~  350 (420)
T 1t3i_A          272 GELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAALASFNVAGL  350 (420)
T ss_dssp             CCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCSEEEEEETTB
T ss_pred             CCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeCCCccccccCCEEEEEECCC
Confidence               12345678888888888778887765 5788999999999999999999 788888765310  1245667777765


Q ss_pred             ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +..++.+.|.  ||.+.+|..|..      .....+|.     .+++||+++..++++++++++++|+++++++++
T Consensus       351 ~~~~~~~~l~~~gi~v~~~~~~~~------~~~~~~g~-----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~  415 (420)
T 1t3i_A          351 HASDVATMVDQDGIAIRSGHHCTQ------PLHRLFDA-----SGSARASLYFYNTKEEIDLFLQSLQATIRFFSD  415 (420)
T ss_dssp             CHHHHHHHHHTTTEECBCSCTTCH------HHHHHTTC-----CCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHHCCeEEeeccccch------HHHHhcCC-----CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            6777877775  899998876543      22222222     378999999889999999999999999887654

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6e-41  Score=316.99  Aligned_cols=353  Identities=17%  Similarity=0.217  Sum_probs=284.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.+++++.+.+.....++.. .+..+....+...++++.+++++|+++++|++++|+|+++.+++.++..
T Consensus        30 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~  108 (406)
T 3cai_A           30 FDAPAGMLIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSS  108 (406)
T ss_dssp             CBGGGCCCCCHHHHHHHHHHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGG
T ss_pred             EeCCCcCCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhh
Confidence            678888899999999999999876666654 5655556678899999999999999888999999999999999988721


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      . .++||+|+++.++|+++...+..+.. .|.+++.+|.+ +++.+|+++|++++++++++|++++++||||.+.|+++|
T Consensus       109 ~-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i  187 (406)
T 3cai_A          109 R-AGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAM  187 (406)
T ss_dssp             G-GBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHH
T ss_pred             c-cCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHH
Confidence            1 16889999999999998887776433 38999999998 678899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCce-EEEEecCCCCcccccc--ccCCccccccCCC
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIG-ALYIRRNPRTRIEAQI--HGGGHEYGLRSGT  235 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  235 (397)
                      .++|+++|+++|+|++|+.+..++++..+++|++++|+||++||. +| +++++++....+.+..  +++....++..++
T Consensus       188 ~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t  266 (406)
T 3cai_A          188 TKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGV  266 (406)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSC
T ss_pred             HHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehHHHhhcCCcccCCCCCccccccCCC
Confidence            999999999999999999887766666668999999999987875 78 9998876555554432  1222223455778


Q ss_pred             CchhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC
Q psy8850         236 LATHQIVGMGEAFRLARI---------------EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF  300 (397)
Q Consensus       236 ~~~~~~~~l~~al~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (397)
                      ++...+.++.++++++.+               +++++.+++.++++++.+.|++ ++++.+..+.... ..++.+.+++
T Consensus       267 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~-~~~~~~~~~~  344 (406)
T 3cai_A          267 HQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS-LPLVMLIGRPEAQ-IPVVSFAVHK  344 (406)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEEECCCCSSB-CSEEEEEETT
T ss_pred             ccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCcccc-CCEEEEEECC
Confidence            888888888888887764               4788899999999999999999 8888877654323 3367777776


Q ss_pred             CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      .+..++.+.|.  ||.+.+|.  .      +..+..+|...  ..+++||+++.+++++++++++++|++
T Consensus       345 ~~~~~~~~~L~~~gi~v~~g~--~------~~~~~~~g~~~--~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          345 VPADRVVQRLADNGILAIANT--G------SRVLDVLGVND--VGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             BCHHHHHHHHHHTTEECEECC--S------CHHHHHHTTTT--TTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHCCcEEecCC--h------HHHHHHcCCCC--CCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence            67778887775  89888875  1      13444555432  247899999998999999999999875

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=100.00  E-value=2.6e-40  Score=315.19  Aligned_cols=372  Identities=34%  Similarity=0.540  Sum_probs=295.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.+++++.+.+...+++|+. .|..+....+...++++++++++|+++++|++++|+++|+.+++.++..
T Consensus        22 Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~  100 (432)
T 3a9z_A           22 MDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVR  100 (432)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHHCCSCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred             eeCCccCCCCHHHHHHHHHHHHHhcCCCcc-CcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHh
Confidence            688888899999999999999876677776 6666666778889999999999999888999999999999999998753


Q ss_pred             hhc----cCCC-------------EEEEcCCCChhhHHHHHHHhh-CCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEE
Q psy8850          81 FYK----KRGK-------------HIITVQTEHKSVLDSIRKLEN-DGFRVTYLKPKN-NGLITLSQLEEKICSDTILVS  141 (397)
Q Consensus        81 ~~~----~~g~-------------~vl~~~~~~~s~~~~~~~~~~-~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~  141 (397)
                      .+.    ++||             +|+++..+|++...++..+.+ .|.+++.+|.++ ++.+|+++|++++++++++|+
T Consensus       101 ~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~  180 (432)
T 3a9z_A          101 CFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVT  180 (432)
T ss_dssp             HHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEE
T ss_pred             hhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEE
Confidence            211    2564             667777777777777766544 489999999985 778999999999999999999


Q ss_pred             EecccCcccccccHHHHHHHHHhcC----------cEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEe
Q psy8850         142 VMLVNNEIGVIQPILEIGELCRSKG----------VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR  211 (397)
Q Consensus       142 ~~~~~~~tG~~~~l~~i~~l~~~~g----------i~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~  211 (397)
                      +++++||||.+.|+++|.++|+++|          +++|+|++|+.+..++++...++|++++|+||++|+. +|+++++
T Consensus       181 ~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~  259 (432)
T 3a9z_A          181 IMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR  259 (432)
T ss_dssp             CCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTCCS-CEEEEET
T ss_pred             EECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcCCc-ceEEEEc
Confidence            9999999999999999999999999          9999999999887666665567899999999987876 8999999


Q ss_pred             cCC-CCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcE--EEeCCC--
Q psy8850         212 RNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI--YINGDM--  286 (397)
Q Consensus       212 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~--  286 (397)
                      ++. ...+.+...++.....+..++++...+.++.++++.+.++++++.+++.++++++.+.|++ ++++  .+..+.  
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~  338 (432)
T 3a9z_A          260 GVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEA-EFGKRIHLNSRFPG  338 (432)
T ss_dssp             TBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGEEESSCCTT
T ss_pred             cccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-ccCCcEEEeCCCCc
Confidence            775 4455555555544455667888888888888899988778889999999999999999988 5443  333331  


Q ss_pred             CCCCCceEEEEecCC--ChHHHHHHhCCcEecccCccCCCC-CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHH
Q psy8850         287 NNRIPHNLNISFNFI--EGESLLMAIKDIAVSSGSACTSAS-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI  363 (397)
Q Consensus       287 ~~~~~~~~~~~~~~~--~~~~~~~~l~~i~~~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~  363 (397)
                      ....+.++.+.+++.  +..++...+.++.+..|..|.++. ..+...+...|+......++|||+++.+++++|+++++
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~  418 (432)
T 3a9z_A          339 VERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIV  418 (432)
T ss_dssp             CCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHH
T ss_pred             ccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHH
Confidence            123355777887752  466777777788888888776521 12234566667653334589999999989999999999


Q ss_pred             HHHHHHHHHHHh
Q psy8850         364 KLLKMKVKKLRE  375 (397)
Q Consensus       364 ~~l~~~~~~~~~  375 (397)
                      ++|+++++++++
T Consensus       419 ~~l~~~~~~~~~  430 (432)
T 3a9z_A          419 QDLKQAVNQLEG  430 (432)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcC
Confidence            999999877653

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=100.00  E-value=5.4e-40  Score=302.95  Aligned_cols=340  Identities=14%  Similarity=0.076  Sum_probs=274.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCC---cchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChhHHHHHHH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRN---HIYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAI   75 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~-~~g~t~a~~~~l   75 (397)
                      ||.+++++.|++|++++.+.+..+++|+.+ .   +..+..+.+.++++|+.+++++++++ .+|+| ++|+|+++++++
T Consensus        16 ~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s-~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~   94 (377)
T 3e77_A           16 ENLYFQSMLPHSVLLEIQKELLDYKGVGIS-VLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVP   94 (377)
T ss_dssp             CCEECSCCCCHHHHHHHHHTSSSGGGSSSC-TTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred             ccccccCCCCHHHHHHHHHHHHhcccCCcc-ccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHH
Confidence            688899999999999999999887777665 3   44566788999999999999999975 46888 589999999999


Q ss_pred             HHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccH
Q psy8850          76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        76 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l  155 (397)
                      .++...  ++||+|++...++.+. .....+.+.|..++.++.+.++..++++++.++++++++|.+++.+|.||++.|+
T Consensus        95 ~~l~~~--~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi  171 (377)
T 3e77_A           95 LNLIGL--KAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF  171 (377)
T ss_dssp             HHHGGG--STTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS
T ss_pred             HhccCC--CCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh
Confidence            998731  2389998888877775 3445555669888888887666678888888888999999999999999999998


Q ss_pred             HHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC-----cccc
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-----HEYG  230 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~-----~~~~  230 (397)
                           +|+++|+++++|+++++|..++|+..++  ++++|.||++||.|+|+++++++..+.+.+......     ....
T Consensus       172 -----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~  244 (377)
T 3e77_A          172 -----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNS  244 (377)
T ss_dssp             -----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTT
T ss_pred             -----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhHHHHhhcC
Confidence                 4889999999999999999999998765  688999997799999999999998877654332211     1123


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC-CCCCCCCceEEEEecCCCh----
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFNFIEG----  303 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----  303 (397)
                      .+.+|+++..++++.++++++.+  |++++.++..++.+++++.|++ ++++.+.. .+..+.+.++.|.+++.++    
T Consensus       245 ~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~  323 (377)
T 3e77_A          245 SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDN-SQGFYVCPVEPQNRSKMNIPFRIGNAKGDDAL  323 (377)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSEECCSCGGGBCSSEEEEEESSTTCCHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-cCCceecCCCHHHcCCcEEEEEcCCCCCchhH
Confidence            45789999999999999998865  6999999999999999999999 88887543 2233445668888887543    


Q ss_pred             -HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         304 -ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       304 -~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                       ..+...+.  ||.+.+|...                     .+.+|+|+..++|.+|||+++++|++++++.
T Consensus       324 ~~~~l~~l~~~Gi~~~~g~~~---------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~~  375 (377)
T 3e77_A          324 EKRFLDKALELNMLSLKGHRS---------------------VGGIRASLYNAVTIEDVQKLAAFMKKFLEMH  375 (377)
T ss_dssp             HHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCcEEeCCCCc---------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence             24555443  8887766311                     2569999999999999999999999998763

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=5.5e-39  Score=297.61  Aligned_cols=330  Identities=12%  Similarity=0.093  Sum_probs=266.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      +++++++++|+.+++++.+.+..          ..++...+...++++++++++|++++++++++|+++|+.+++.++. 
T Consensus         4 l~~~~p~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~-   72 (352)
T 1iug_A            4 LLTPGPVRLHPKALEALARPQLH----------HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF-   72 (352)
T ss_dssp             ECSSSSCCCCHHHHHHHHSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-
T ss_pred             cccCCCCCCCHHHHHHhccCCCC----------ccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc-
Confidence            36788889999999998876532          1233456678899999999999987889999999999999999886 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                         ++||+|+++.++|+++. ....+...|.+++.+|.+.++.+|++++++   +++++|++++++||||.+.|+++|.+
T Consensus        73 ---~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~  145 (352)
T 1iug_A           73 ---APGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALAR  145 (352)
T ss_dssp             ---CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHHH
T ss_pred             ---CCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHHH
Confidence               78999999999999986 334444459999999998888889999887   67899999999999999999999999


Q ss_pred             HHHhc--CcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccc---------ccccCCcc
Q psy8850         161 LCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA---------QIHGGGHE  228 (397)
Q Consensus       161 l~~~~--gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~---------~~~~~~~~  228 (397)
                      +|++|  |+++|+|++|+++..++++..+++|++++|+|| ++|+.|+|+++++++..+.+.+         ....  ..
T Consensus       146 l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  223 (352)
T 1iug_A          146 AFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKA--QK  223 (352)
T ss_dssp             HHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHH--HT
T ss_pred             HHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhh--cc
Confidence            99999  999999999998877766666678999999999 8888889999998765433221         0000  01


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLL  307 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  307 (397)
                      .....++++...+.++.++++.+.+.++++.+++.++++++.+.|++ + ++.+..+.  ..+.++++.++ +.+..++.
T Consensus       224 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--~~~~~~~~~~~~~~~~~~~~  299 (352)
T 1iug_A          224 EGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE-G-GLRPVPKR--FSPAVAAFYLPEGVPYARVK  299 (352)
T ss_dssp             TTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS--BCTTCEEEECCTTCCHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccccc--cCCeEEEEEcCCCCCHHHHH
Confidence            13445678888888888888887656788999999999999999999 6 77776543  23567788876 45677888


Q ss_pred             HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         308 MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       308 ~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.|.  ||.+.+|..+                   ...+++||+++..++++++++++++|+++++++
T Consensus       300 ~~l~~~gi~v~~~~~~-------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  348 (352)
T 1iug_A          300 EAFAQRGAVIAGGQGP-------------------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  348 (352)
T ss_dssp             HHHHTTTEECEECCGG-------------------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCEEEEeCCCc-------------------cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence            8775  8888877421                   123789999998889999999999999988655

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=100.00  E-value=7.5e-38  Score=294.06  Aligned_cols=338  Identities=19%  Similarity=0.273  Sum_probs=272.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcc-CCCCCCCcchhhh-HHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQF-GNPASRNHIYGWT-AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA   78 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l   78 (397)
                      ||+++.+++|+.+++++.+.+.... .++..  +. .|. ..+...++++.+++++|+++++|++++|+++|+.+++.++
T Consensus        20 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~-~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~   96 (390)
T 1elu_A           20 FNFGGQGILPTVALEAITAMYGYLQENGPFS--IA-ANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGL   96 (390)
T ss_dssp             CCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS--HH-HHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHS
T ss_pred             ecCCccCCCCHHHHHHHHHHHHHHhccCCcc--hh-hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCC
Confidence            5778888889999999999887522 11111  11 122 2467889999999999998889999999999999999988


Q ss_pred             -HhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850          79 -AHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        79 -~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                       .    ++|++|+++.++|+++...+..+ ...|.+++.+|.+  .++.+|++++++++++++++|++++++||||.+.|
T Consensus        97 ~~----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~  172 (390)
T 1elu_A           97 DW----HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLP  172 (390)
T ss_dssp             CC----CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCC
T ss_pred             CC----CCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecC
Confidence             5    78999999999999988765432 2238999999987  57789999999999999999999999999999999


Q ss_pred             HHHHHHHHH----hcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc--
Q psy8850         155 ILEIGELCR----SKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH--  227 (397)
Q Consensus       155 l~~i~~l~~----~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~--  227 (397)
                      +++|.++|+    +||+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|+++++++..+.+.+...++..  
T Consensus       173 ~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~  252 (390)
T 1elu_A          173 LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSIT  252 (390)
T ss_dssp             HHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEE
T ss_pred             HHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCccc
Confidence            999999999    99999999999998887777666689999999999 88888899999998877776655444321  


Q ss_pred             -------------cccccCCCCchhHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCc
Q psy8850         228 -------------EYGLRSGTLATHQIVGMGEAFRLARI-E-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH  292 (397)
Q Consensus       228 -------------~~~~~~~~~~~~~~~~l~~al~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  292 (397)
                                   ...+..++++...+.++.++++.+.+ + ++++.+++.++++++.+.|++ ++++.+..+. ...++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~-~~~~~  330 (390)
T 1elu_A          253 YGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLATS-APQAG  330 (390)
T ss_dssp             ECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCSS-CCSSS
T ss_pred             ccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEecCc-ccccc
Confidence                         12445677888888888888887755 3 888999999999999999999 7888877542 12255


Q ss_pred             eEEEEec-CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         293 NLNISFN-FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       293 ~~~~~~~-~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ++.+.++ +.+..++.+.|.  ||.+.+|.                      ..+++||+++..++++++++++++|+++
T Consensus       331 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~----------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          331 LVSFTVDSPLGHRAIVQKLEEQRIYLRTIA----------------------DPDCIRACCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHTTEECEEET----------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHCCEEEEecC----------------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence            6677774 456777877776  88888763                      1378999998889999999999998753

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=100.00  E-value=7.7e-39  Score=301.10  Aligned_cols=340  Identities=14%  Similarity=0.107  Sum_probs=269.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.+++++.+.+..         + .++...+...++++.+++++|++++++++|+|+|+|+.+++.++. 
T Consensus        12 l~~~~~~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~-   80 (392)
T 2z9v_A           12 TLTAGPVNAYPEVLRGLGRTVLY---------D-YDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI-   80 (392)
T ss_dssp             ECSSSCCCCCHHHHHHTTSCCCC---------T-TSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC-
T ss_pred             eecCCCcCCCHHHHHHHhccccc---------c-ccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc-
Confidence            57888899999999998765532         1 123456678899999999999988899999999999999999886 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc--CCceEEEEecccCcccccccHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                         ++||+|+++.++|+++. ....+...|.+++.+|.+.++.+|++++++++.  +++++|++++++||||.+.|+++|
T Consensus        81 ---~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i  156 (392)
T 2z9v_A           81 ---SPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAI  156 (392)
T ss_dssp             ---CTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHH
T ss_pred             ---CCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHH
Confidence               78999999999998874 223323338999999998888899999999994  589999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccc-------ccC-----
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI-------HGG-----  225 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~-------~~~-----  225 (397)
                      .++|++||+++|+|++|+.+..++++..+++|++++|+|| ++|+.|+|+++++++..+.+.+..       .+.     
T Consensus       157 ~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~  236 (392)
T 2z9v_A          157 GALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWEN  236 (392)
T ss_dssp             HHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTT
T ss_pred             HHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHh
Confidence            9999999999999999998877766666678999999999 788888999999876554443311       110     


Q ss_pred             -CccccccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC-CCCCceEEEEec-CC
Q psy8850         226 -GHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFN-FI  301 (397)
Q Consensus       226 -~~~~~~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~  301 (397)
                       ........++++...++++.++++.+.+. ++++.+++.++++++.+.|++ + ++.+..++. ...+.++++.++ +.
T Consensus       237 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~  314 (392)
T 2z9v_A          237 AWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTA-M-GLSVWAASDSIASPTTTAVRTPDGV  314 (392)
T ss_dssp             TTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCTTEEEEECCTTC
T ss_pred             hhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCCccccCCceEEEECCCCC
Confidence             01123456778888888888899887665 888999999999999999998 6 766655221 223566777775 45


Q ss_pred             ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      +..++.+.|.   ||.+.+|..+.                   ..+++||++ +..++++++++++++|++++++++-.
T Consensus       315 ~~~~l~~~L~~~~gi~v~~g~~~~-------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~~~  374 (392)
T 2z9v_A          315 DEKALRQAARARYGVVFSSGRGET-------------------LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAGRK  374 (392)
T ss_dssp             CHHHHHHHHHHHHCEECEECCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhcCCEEEecCCCCC-------------------CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcCCC
Confidence            6777887774   88888775321                   248899996 43689999999999999998877543

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=100.00  E-value=5.5e-39  Score=301.09  Aligned_cols=336  Identities=16%  Similarity=0.205  Sum_probs=268.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC--CcEEEeCChhHHHHHHHHHhH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP--REIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      .++++.++++++++++.+.+..          ..++...+...++++++++++++++  +++++++|+++|+. ++.++.
T Consensus         6 ~~~gp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~   74 (384)
T 3zrp_A            6 LHVGPTTIKEDVLVAGLENNVG----------FTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL   74 (384)
T ss_dssp             CCSSCSCCCHHHHHHTTCCSCC----------TTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC
T ss_pred             ccCCCCCCCHHHHHHhhccccc----------cccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc
Confidence            4567788899999988765532          1233456788999999999999987  78999999999999 888776


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                          ++||+|+++++.|++.. ........|.+++.+|.+.++.+|++++++++++ ++++|++++++||||.+.|+++|
T Consensus        75 ----~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i  149 (384)
T 3zrp_A           75 ----KPNDKILVVSNGVFGDR-WEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDV  149 (384)
T ss_dssp             ----CTTCEEEEECSSHHHHH-HHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHH
T ss_pred             ----CCCCEEEEecCCcchHH-HHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHH
Confidence                79999999999887742 1122234499999999998888999999999988 89999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc-ccccccC-----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI-EAQIHGG-----------  225 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~-~~~~~~~-----------  225 (397)
                      .++|++||+++|+|++|+.+..+.++...++|++++|+|| +.|+.|+|+++++++..+.+ .+.....           
T Consensus       150 ~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (384)
T 3zrp_A          150 INKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPV  229 (384)
T ss_dssp             HHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHH
T ss_pred             HHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHH
Confidence            9999999999999999999888877777789999999999 66788899999987765544 1100000           


Q ss_pred             Ccc----ccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC-CCCCCceEEEEec
Q psy8850         226 GHE----YGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN  299 (397)
Q Consensus       226 ~~~----~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~  299 (397)
                      ...    .....++++...+.++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..++ ....+.++++.++
T Consensus       230 ~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~  307 (384)
T 3zrp_A          230 MRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEA-L-GLEIVARRPESYSNTVTGVILK  307 (384)
T ss_dssp             HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSCSSGGGBCSSEEEEECS
T ss_pred             HHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-C-CCeEccCcccccCccEEEEECC
Confidence            000    1222357888888988889988765 4889999999999999999999 5 77666544 2223566678887


Q ss_pred             CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         300 FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       300 ~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +.+..++.+.|.  ||.+.+|..+..                    +++||+++..++++++++++++|++++++++.
T Consensus       308 ~~~~~~~~~~l~~~gi~v~~g~~~~~--------------------~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~  365 (384)
T 3zrp_A          308 VADPQKVLAGTVNEGVEFAPGVHPAF--------------------KYFRIGHMGWVTPNDAIIAISVIERTLRKLGE  365 (384)
T ss_dssp             SSCHHHHHHHHHTTTCCCEECCCTTC--------------------CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHCCEEEecCCCCCc--------------------CEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence            767788888876  888887743221                    78999999889999999999999999988754

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.8e-38  Score=295.68  Aligned_cols=336  Identities=15%  Similarity=0.196  Sum_probs=266.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      +|+++++++++.+.+++.+.+..        .+  +....+...++++.+++++|++ ++++++++|+++|+.+++.++.
T Consensus        23 l~~~~~~~~~~~v~~a~~~~~~~--------~~--~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~   92 (386)
T 2dr1_A           23 LFTAGPVACFPEVLEIMKVQMFS--------HR--SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV   92 (386)
T ss_dssp             ECCSSSCCCCHHHHHHTTSCCCC--------TT--SHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS
T ss_pred             eecCCCcCCcHHHHHHHhccccc--------cc--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh
Confidence            47888889999999887665432        11  2234678889999999999997 6679999999999999999886


Q ss_pred             hhhccCCCEEEEcCCCChh--hHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHh--cCCceEEEEecccCcccccccH
Q psy8850          80 HFYKKRGKHIITVQTEHKS--VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI--CSDTILVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s--~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i--~~~~~~v~~~~~~~~tG~~~~l  155 (397)
                          ++||+|++++++|++  +...+...   |.+++.++.+.++.+|+++|++++  .+++++|++++++||||.+.|+
T Consensus        93 ----~~gd~vl~~~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l  165 (386)
T 2dr1_A           93 ----SKGGKVLVTIIGAFGKRYKEVVESN---GRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPL  165 (386)
T ss_dssp             ----CTTCEEEEEESSHHHHHHHHHHHHT---TCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred             ----cCCCeEEEEcCCchhHHHHHHHHHh---CCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCH
Confidence                789999999999998  55444444   999999999888889999999999  5689999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccc-ccCC-------
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI-HGGG-------  226 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~-~~~~-------  226 (397)
                      ++|.++|++||+++|+|++|+.+..+.++..+++|++++|+|| +.++.|+|+++++++..+.+.+.. .++.       
T Consensus       166 ~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (386)
T 2dr1_A          166 PELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYV  245 (386)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHH
T ss_pred             HHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHH
Confidence            9999999999999999999998877666666688999999999 555657899999876544442210 0000       


Q ss_pred             --cc-ccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850         227 --HE-YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F  300 (397)
Q Consensus       227 --~~-~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~  300 (397)
                        .. .....++++...+.++.++++.+.+  +++++.+++.++++++.+.|++ + ++.+..++....+.++++.++ +
T Consensus       246 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~  323 (386)
T 2dr1_A          246 KYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVRE-I-GLDILAEPGHESPTITAVLTPPG  323 (386)
T ss_dssp             HHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCTTCBCSSEEEEECCTT
T ss_pred             HhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCeeCcCccccCCceEEEEcCCC
Confidence              00 1234557777888888889988765  3888999999999999999998 5 766655432223567777776 4


Q ss_pred             CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      .+..++.+.|.  ||.+.+|..+.                   ..+++||+++.+++++++++++++|++++++++
T Consensus       324 ~~~~~~~~~l~~~gi~v~~~~~~~-------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  380 (386)
T 2dr1_A          324 IKGDEVYEAMRKRGFELAKGYGSV-------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINELK  380 (386)
T ss_dssp             CCHHHHHHHHHHTTEECEECCGGG-------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCeEEecCcccc-------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            56777887776  89888875321                   237899999988899999999999999987763

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=100.00  E-value=1.5e-38  Score=299.29  Aligned_cols=339  Identities=17%  Similarity=0.213  Sum_probs=268.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++.++.++|+.+++++.+.+..        .+  .....+...++++++++++|++++ ++++++|+++|+.+++.++. 
T Consensus        23 ~~~g~~~~~~~v~~a~~~~~~~--------~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-   91 (393)
T 2huf_A           23 MGPGPSNAPQRVLDAMSRPILG--------HL--HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL-   91 (393)
T ss_dssp             CSSSCCCCCHHHHHHTTSCCCC--------TT--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-
T ss_pred             ecCCCCCCCHHHHHHHHhhhcc--------CC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh-
Confidence            5667778899999987765432        11  234467889999999999999875 79999999999999999886 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                         ++||+|+++.++|+++. ....+...|.+++.+|.+.++.+|++++++++++ ++++|++++++||||.+.|+++|.
T Consensus        92 ---~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~  167 (393)
T 2huf_A           92 ---EDGDVILIGHTGHWGDR-SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVG  167 (393)
T ss_dssp             ---CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred             ---CCCCEEEEECCCcchHH-HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHH
Confidence               78999999999998853 2233344599999999988888999999999988 899999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc-------c---------
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-------I---------  222 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~-------~---------  222 (397)
                      ++|++||+++|+|++++++..+.++..+++|++++|+|| ++|+.|.|+++++++..+.+...       .         
T Consensus       168 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (393)
T 2huf_A          168 ALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDY  247 (393)
T ss_dssp             HHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHH
T ss_pred             HHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhh
Confidence            999999999999999998877777666689999999999 68888899999987655443322       1         


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F  300 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~  300 (397)
                      .++....++..++++...++++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..++....+.++.+.++ +
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 2huf_A          248 WGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQD-A-GFELYADPKDRLSTVTTIKVPQG  325 (393)
T ss_dssp             TTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCTTEEEEECCTT
T ss_pred             hccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCccccCCcEEEEEcCCC
Confidence            1111123456678888999988889988765 5888999999999999999998 5 766654432223457777775 4


Q ss_pred             CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      .+..++.+.|.   ||.+.+|..+.                   ..+++||++ +..++++++++++++|+++++++++.
T Consensus       326 ~~~~~~~~~L~~~~gi~v~~g~~~~-------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~~  386 (393)
T 2huf_A          326 VDWLKAAQYAMKTYLVEISGGLGPT-------------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKPD  386 (393)
T ss_dssp             CCHHHHHHHHHHHHCEECBCCCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC-
T ss_pred             CCHHHHHHHHHHhCCEEEecCcccc-------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence            56778887773   89888775331                   137899999 54457999999999999999887654

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=100.00  E-value=1e-39  Score=302.96  Aligned_cols=337  Identities=12%  Similarity=0.064  Sum_probs=251.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCC--CcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChhHHHHHHHH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASR--NHIYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAIK   76 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~-~~g~t~a~~~~l~   76 (397)
                      ||++++++.|++|++++.+++...++||.+.  .+..+..+.+.++++|+.++++++++. .+|+| |+|+|+++++++.
T Consensus        30 l~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~  109 (386)
T 3qm2_A           30 NFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPL  109 (386)
T ss_dssp             ECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHH
T ss_pred             cccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHH
Confidence            5899999999999999999888777777651  122355667889999999999999964 46888 6999999999999


Q ss_pred             HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCC-CCHHHHHHHhcCCceEEEEecccCccccc-
Q psy8850          77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGL-ITLSQLEEKICSDTILVSVMLVNNEIGVI-  152 (397)
Q Consensus        77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~-~d~~~l~~~i~~~~~~v~~~~~~~~tG~~-  152 (397)
                      ++.    ++||+|++...++.+.. ....+.+.| +++.++.+  +.|. +++++++++++++|++|.+++.+|.+|++ 
T Consensus       110 ~l~----~~gd~v~~~~~~~~~~~-~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i  183 (386)
T 3qm2_A          110 NLL----GDKTTADYVDAGYWAAS-AIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAI  183 (386)
T ss_dssp             HHC----TTCCEEEEEESSHHHHH-HHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEEC
T ss_pred             hcc----CCCCeEEEEeCCHHHHH-HHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEec
Confidence            987    68898876666666653 334445558 89999988  6675 78889999999999999999999999996 


Q ss_pred             ccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccC-----Cc
Q psy8850         153 QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG-----GH  227 (397)
Q Consensus       153 ~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~-----~~  227 (397)
                      .|+++|.     +|+++++|++|++|..++|+..++  ++++|.||++||.|+|+++++++..+.+.+.....     ..
T Consensus       184 ~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~  256 (386)
T 3qm2_A          184 DETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLN  256 (386)
T ss_dssp             CCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGGCHHHHH
T ss_pred             Cchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCccEEEEECHHHHhhhcccCCcHHHHHHHh
Confidence            8898885     799999999999999999998765  67899999779999999999998877665432211     12


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CCh
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG  303 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  303 (397)
                      ..+.+.+|+|+..++++.++++++.+  +++++.++..++++++++.|++ ++-+....++..+.+.++.|.+++  .+ 
T Consensus       257 ~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~rs~~iv~f~~~~~~~~-  334 (386)
T 3qm2_A          257 DNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDN-SDFYRNDVAQANRSRMNVPFQLADNTLD-  334 (386)
T ss_dssp             HC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT-CSSEECCBCGGGBCSSEEEEEESSGGGH-
T ss_pred             hcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-CCCcccCCCHHHcCceEEEEECCCcccc-
Confidence            23456789999999999999999866  5999999999999999999998 532222223333446788888874  33 


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .++...|.  ||.+..|..+.                     +.+|+|+..++|.+|||+++++|+++.++.
T Consensus       335 ~~~~~~L~~~gI~~~~g~~~~---------------------~~iRiS~~~~~t~edId~l~~~l~~~~~~~  385 (386)
T 3qm2_A          335 KVFLEESFAAGLHALKGHRVV---------------------GGMRASIYNAMPIEGVKALTDFMIDFERRH  385 (386)
T ss_dssp             HHHHHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEeCCCCCc---------------------CeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            56666565  88887764332                     459999999999999999999999988653

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=100.00  E-value=9.7e-38  Score=295.40  Aligned_cols=335  Identities=18%  Similarity=0.246  Sum_probs=268.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc-EEEeCChhHHHHHHHHHhHhh
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE-IIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ..++.++++.+++++.+.+.         .+ ..+...+...+++++++++++.+.++ +++++|+++|+.+++.++.  
T Consensus        18 ~pgp~~~~~~v~~a~~~~~~---------~~-~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--   85 (411)
T 3nnk_A           18 GPGPINADPRVLRAMSSQLI---------GQ-YDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--   85 (411)
T ss_dssp             SSSCCCCCHHHHHHHTSCCC---------CT-TCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--
T ss_pred             cCCCCCCCHHHHHHhhcccc---------cc-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--
Confidence            45666778888888765331         11 12344577889999999999998665 8899999999999999886  


Q ss_pred             hccCCCEEEEcCCCChh--hHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHH
Q psy8850          82 YKKRGKHIITVQTEHKS--VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s--~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                        ++||+|+++.++|++  +...+...   |.+++.+|.+.++.+|+++|++++++ ++++|++++++||||.+.|+++|
T Consensus        86 --~~gd~Vl~~~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i  160 (411)
T 3nnk_A           86 --RPGDKVLVPVFGRFGHLLCEIARRC---RAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAEL  160 (411)
T ss_dssp             --CTTCEEEEEECSHHHHHHHHHHHHT---TCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred             --CCCCEEEEecCCchHHHHHHHHHHc---CCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHH
Confidence              799999999999987  54444444   99999999988888999999999987 89999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc------cccCCc----
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ------IHGGGH----  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~------~~~~~~----  227 (397)
                      .++|++||+++|+|++++.+..+++....++|++++|+|| ++|+.|+|+++++++..+.+...      +.++..    
T Consensus       161 ~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~  240 (411)
T 3nnk_A          161 GEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGD  240 (411)
T ss_dssp             HHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCS
T ss_pred             HHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccccccccccccc
Confidence            9999999999999999999888888877789999999999 68888999999987755444322      111110    


Q ss_pred             -------------------cccccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC
Q psy8850         228 -------------------EYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMN  287 (397)
Q Consensus       228 -------------------~~~~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  287 (397)
                                         ..++..++++...+.++.++++...+. ++++.+++.++++++.+.|++ + ++.+..++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~  318 (411)
T 3nnk_A          241 EEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA-M-GLETFGDLK  318 (411)
T ss_dssp             SCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBCSCGG
T ss_pred             CCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCEeCCCcc
Confidence                               223556788889999998999887664 889999999999999999998 4 776665544


Q ss_pred             CCCCceEEEEec-CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHH
Q psy8850         288 NRIPHNLNISFN-FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFT  362 (397)
Q Consensus       288 ~~~~~~~~~~~~-~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~  362 (397)
                      ...+.++.+.++ +.+..++.+.|.   ||.+.+|...                   ..++++||++ +..+++++++++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~-------------------~~~~~iRi~~~~~~~~~~~i~~~  379 (411)
T 3nnk_A          319 HKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGP-------------------LHGKVWRIGTMGYNARKDCVMTT  379 (411)
T ss_dssp             GBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGG-------------------GTTTEEEEECCGGGCSHHHHHHH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCC-------------------CCCCEEEEeCccCcCCHHHHHHH
Confidence            344667788875 557778887763   8888876311                   1247999998 666789999999


Q ss_pred             HHHHHHHHHHHHh
Q psy8850         363 IKLLKMKVKKLRE  375 (397)
Q Consensus       363 ~~~l~~~~~~~~~  375 (397)
                      +++|+++++++..
T Consensus       380 ~~~l~~~l~~~~~  392 (411)
T 3nnk_A          380 LSALEAVLNYLKF  392 (411)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999987754

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=100.00  E-value=1.4e-37  Score=288.06  Aligned_cols=331  Identities=16%  Similarity=0.164  Sum_probs=261.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChhHHHHHHHHHhH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      .+++++++|+.+++++.+.+..         + .++...+...++++++++++|.+  ++++++|+|+++|+.+++.++.
T Consensus         4 ~~~gp~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~   73 (353)
T 2yrr_A            4 LTPGPTPIPERVQKALLRPMRG---------H-LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD   73 (353)
T ss_dssp             CSSSSCCCCHHHHGGGGSCCCC---------T-TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS
T ss_pred             CCCCCCCCCHHHHHHHhccccc---------c-cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc
Confidence            5678889999999998776532         1 12344567899999999999985  6679999999999999999886


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                          +  |+|+++.++|+++ .....+...|.+++.+|.++++.+|++++++++++ ++++|++++++||||.+.|+++|
T Consensus        74 ----~--d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i  146 (353)
T 2yrr_A           74 ----R--GPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAI  146 (353)
T ss_dssp             ----C--CCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHH
T ss_pred             ----C--CcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHH
Confidence                4  7899999999987 32333344599999999988888999999999988 89999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccC---------Ccc
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG---------GHE  228 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~---------~~~  228 (397)
                      .++|++||+++|+|++|+++..+.++..+++|++++|+|| ++|+.|+|+++++++..+.+.. ..+.         ...
T Consensus       147 ~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~  225 (353)
T 2yrr_A          147 GALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KRGWYLDLARVAEHWE  225 (353)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CSCSTTCHHHHHHHHT
T ss_pred             HHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CCCccccHHHHhhhhh
Confidence            9999999999999999998776666555578999999999 7787889999999875544431 0000         000


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESL  306 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  306 (397)
                      .....++++...+.++.++++.+.+. ++++.+++.++++++.+.|++ + ++.+..++ ...+.++++.++ +.+..++
T Consensus       226 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~  302 (353)
T 2yrr_A          226 RGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKA-R-GFRPYPKA-SPLPTVLVVRPPEGVDADRL  302 (353)
T ss_dssp             TCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS-SBCTTEEEEECCTTCCHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCccccCc-cCCCeEEEEECCCCCCHHHH
Confidence            12345677888888888888887554 888999999999999999998 6 77776532 123556677775 4567788


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHH-HHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID-FTIKLLKMKVKK  372 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~-~~~~~l~~~~~~  372 (397)
                      .+.|.  ||.+.+|..+..                   ++++|+++....++++++ +++++|++++++
T Consensus       303 ~~~l~~~gi~v~~g~~~~~-------------------~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~  352 (353)
T 2yrr_A          303 VRALYAEGVAVAGGIGPTR-------------------GQVLRLGLMGEGARREAYQAFLKALDRALAL  352 (353)
T ss_dssp             HHHHHHTTEECEECCGGGT-------------------TTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCEEEeCCccccC-------------------CCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence            87776  899888753321                   378999997777899999 999999988753

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=100.00  E-value=1.2e-37  Score=290.75  Aligned_cols=341  Identities=14%  Similarity=0.169  Sum_probs=258.5

Q ss_pred             CCC-CCCCCCCHHHHHHHHHHHhhccCC-CCCCCcchhhhHHHHHHHHHHH-HHHHhCCCCCcEEEeCChhHHHHHHHHH
Q psy8850           1 MDY-SATTPIDPRVVDKMIPYLRVQFGN-PASRNHIYGWTAEKAIEKARNE-VAQLIYADPREIIWTSGATESNNLAIKG   77 (397)
Q Consensus         1 ~~~-~~~~~~~~~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~i~~~~g~t~a~~~~l~~   77 (397)
                      ||+ ++.+++++.+++++.+.+...... ..+ .+..++...+...++++. ++++++.+  ++++++|+|+|+.+++.+
T Consensus        12 ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~~~   88 (371)
T 2e7j_A           12 IDPLQTGGKLTEEARQALLEWGDGYSVCDFCT-TGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHS   88 (371)
T ss_dssp             CCHHHHTCCCCHHHHHHHHHC---------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHH
T ss_pred             ecccccCCCCCHHHHHHHHHHHhhcccCCccc-cccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHHHH
Confidence            355 446788999999999887652210 000 122334445678899999 99999988  899999999999999999


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEec--cCCCCCCCHHHHHHHhc-----CCceEEEEecccCccc
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK--PKNNGLITLSQLEEKIC-----SDTILVSVMLVNNEIG  150 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~--~~~~~~~d~~~l~~~i~-----~~~~~v~~~~~~~~tG  150 (397)
                      +.    ++|++|+++.++|+++...+...   |.+++.+|  .++++.+|+++|+++++     +++++|++++++||||
T Consensus        89 ~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG  161 (371)
T 2e7j_A           89 LA----KKDAWVVMDENCHYSSYVAAERA---GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYG  161 (371)
T ss_dssp             HC----CTTCEEEEETTCCHHHHHHHHHT---TCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTC
T ss_pred             Hh----CCCCEEEEccCcchHHHHHHHHc---CCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCc
Confidence            86    78999999999999999886665   99999999  77778899999999998     7899999999999999


Q ss_pred             ccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCc-cccccccCCcc
Q psy8850         151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR-IEAQIHGGGHE  228 (397)
Q Consensus       151 ~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~-~~~~~~~~~~~  228 (397)
                      .+.|+++|.++|++||+++|+|++|+.+..+.++..+++|++++|+|| +.++.++|+++++++..+. +.+...++...
T Consensus       162 ~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  241 (371)
T 2e7j_A          162 NLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKE  241 (371)
T ss_dssp             CCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSB
T ss_pred             ccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccc
Confidence            999999999999999999999999998877666655678999999999 6776688999999887776 66544332222


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI--LFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL  306 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (397)
                      ..++.++++..+++++.++++.+.+   ++.+++  .++++++.+.|++ + ++.+..+... .++++++.++  +..++
T Consensus       242 ~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~-~~~~~~~~~~--~~~~~  313 (371)
T 2e7j_A          242 VELLGCTARGATIITLMASFPHVRE---RIKRWDEEVEKARRFAAEMEK-L-GIKQLGDNPH-NHDLMFFHAE--VLYEI  313 (371)
T ss_dssp             GGGTTCCCCSHHHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHH-T-TCEEESSSSC-CSSEEEEECH--HHHHH
T ss_pred             cccccCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-c-CcEEecCCCc-cCceEEEECC--CHHHH
Confidence            2233677788888888788887654   667777  8999999999998 5 8877765321 2457777776  56677


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE-EeeCCC-CCHHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR-FTIGRF-TTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR-i~~~~~-~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .+.|.  ||.+.+ ..+..         ...|.    ..+++| ++++.. ++++++++++++|+++++++
T Consensus       314 ~~~l~~~gi~~~~-~~~~~---------~~~g~----~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~  370 (371)
T 2e7j_A          314 SKKAKGGRFFLYR-ELKSR---------KIHGI----KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY  370 (371)
T ss_dssp             HHHSSSGGGHHHH-HHHHT---------TEECS----CTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCEEEEe-ccccc---------cccCC----CCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence            77776  666654 11100         00011    147899 999987 89999999999999988653

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=100.00  E-value=1.3e-37  Score=299.30  Aligned_cols=347  Identities=15%  Similarity=0.147  Sum_probs=268.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchh-hhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG-WTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++.++.|+.+.+++.+.+..+...... .+..+ ........++++++++++|+++++|++++|+|+++++++.++.
T Consensus        71 ld~~~~g~~p~~v~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~  149 (465)
T 3e9k_A           71 FLGNSLGLQPKMVKTYLEEELDKWAKIAAY-GHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFF  149 (465)
T ss_dssp             CBTTTSCCEETTHHHHHHHHHHHHHHHGGG-GGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHC
T ss_pred             ecCCccCCChHHHHHHHHHHHHHHHhhCCc-ccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhc
Confidence            678888888888988888777542211110 11111 1122345678999999999998899999999999999999886


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE-----EEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCccc
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV-----TYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIG  150 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v-----~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG  150 (397)
                      ... .++++|+++.++|++....+.. +...|.++     ..+|.+.++.+|+++++++++   +++++|++++++||||
T Consensus       150 ~~~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG  228 (465)
T 3e9k_A          150 KPT-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTG  228 (465)
T ss_dssp             CCC-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTC
T ss_pred             ccc-CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcc
Confidence            211 2345699999999998876664 33347663     455667778899999999996   6899999999999999


Q ss_pred             ccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccccc--CCCCceEEEEecCCCCccccccccCC--
Q psy8850         151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQIHGGG--  226 (397)
Q Consensus       151 ~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~--g~~g~g~~~~~~~~~~~~~~~~~~~~--  226 (397)
                      .+.|+++|.++|++||+++|+|++|+.|..++++..+++|++++|+||++  ||.|+|+++++++....+.+...+|.  
T Consensus       229 ~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~  308 (465)
T 3e9k_A          229 QHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGH  308 (465)
T ss_dssp             BBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGB
T ss_pred             eeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCC
Confidence            99999999999999999999999999999988888889999999999944  67778999999887776665544421  


Q ss_pred             ----------------ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhc---------CcE
Q psy8850         227 ----------------HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESI---------EEI  280 (397)
Q Consensus       227 ----------------~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~---------~~~  280 (397)
                                      ...+++.|+++...++++.++++.+.+ +++++.++..++++++.+.|++.+         +++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~  388 (465)
T 3e9k_A          309 ELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVV  388 (465)
T ss_dssp             CHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CE
T ss_pred             CCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCe
Confidence                            123456779999999999999998876 489999999999999999999822         788


Q ss_pred             EEeCCCC-CCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCH
Q psy8850         281 YINGDMN-NRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTE  356 (397)
Q Consensus       281 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~  356 (397)
                      .+..+.. ...+.++.+.++ .+..++.+.|.  ||.+..+                       .+++|||++ +.+++.
T Consensus       389 ~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~~Gi~v~~~-----------------------~~~~iRis~~~~~~t~  444 (465)
T 3e9k_A          389 NIITPSHVEERGCQLTITFS-VPNKDVFQELEKRGVVCDKR-----------------------NPNGIRVAPVPLYNSF  444 (465)
T ss_dssp             EECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHTTTEECEEE-----------------------TTTEEEEBCCTTTCCH
T ss_pred             EEeCCCCHhhcccEEEEEec-CCHHHHHHHHHHCCEEEecC-----------------------CCCEEEEeCcccCCCH
Confidence            8887542 122456677776 44556766665  7766521                       138999998 788999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy8850         357 KEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       357 ~~i~~~~~~l~~~~~~~  373 (397)
                      +||++++++|++++++.
T Consensus       445 edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          445 HDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             HHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999988654

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=3e-37  Score=292.55  Aligned_cols=311  Identities=18%  Similarity=0.239  Sum_probs=253.6

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCcEE-EeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChh--hHHHHHHHhhCCcEE
Q psy8850          37 WTAEKAIEKARNEVAQLIYADPREII-WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS--VLDSIRKLENDGFRV  113 (397)
Q Consensus        37 ~~~~~~~~~~~~~la~~~~~~~~~i~-~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s--~~~~~~~~~~~g~~v  113 (397)
                      +...+...+++++++++++.++++++ +++|+++|+.+++.++.    ++||+|+++.++|++  +...+..   .|.++
T Consensus        40 ~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~~---~g~~~  112 (416)
T 3isl_A           40 PAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI----EPEDDVLIPIYGRFGYLLTEIAER---YGANV  112 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC----CTTCEEEEEESSHHHHHHHHHHHH---TTCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc----CCCCEEEEecCCcccHHHHHHHHh---cCCee
Confidence            44567889999999999999877665 89999999999999886    799999999999988  3333333   39999


Q ss_pred             EEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM  192 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~  192 (397)
                      +.+|.+.++.+|+++++++++ +++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+..+.+...+++|++
T Consensus       113 ~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~  192 (416)
T 3isl_A          113 HMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAA  192 (416)
T ss_dssp             EEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEE
T ss_pred             EEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEE
Confidence            999999888999999999998 5899999999999999999999999999999999999999999888888877789999


Q ss_pred             Eecccc-ccCCCCceEEEEecCCCCcccccc---------------ccC----------------CccccccCCCCchhH
Q psy8850         193 SFSAHK-IYGPKGIGALYIRRNPRTRIEAQI---------------HGG----------------GHEYGLRSGTLATHQ  240 (397)
Q Consensus       193 ~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~---------------~~~----------------~~~~~~~~~~~~~~~  240 (397)
                      ++|+|| ++|+.|+|+++++++..+.+.+..               .++                .....+..++++...
T Consensus       193 ~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (416)
T 3isl_A          193 IGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTM  272 (416)
T ss_dssp             ECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHH
T ss_pred             EecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHH
Confidence            999999 788889999999877654443211               000                012345677888899


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHHHHhC---CcEe
Q psy8850         241 IVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAIK---DIAV  315 (397)
Q Consensus       241 ~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~---~i~~  315 (397)
                      +.++.++++...+. ++++.+++.++++++.+.|++ + ++.+..++....+.++.+.++ +.+..++.+.|.   ||.+
T Consensus       273 ~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v  350 (416)
T 3isl_A          273 LYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA-M-GLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEI  350 (416)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEEC
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEE
Confidence            99998999987765 899999999999999999999 4 777665544344567778875 567788888774   8888


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH-HHHHHHHHHHHHHHHHh
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE-IDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~-i~~~~~~l~~~~~~~~~  375 (397)
                      .+|...                   ..++++||++..+.+.++ +++++++|+++++++..
T Consensus       351 ~~g~~~-------------------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~~  392 (416)
T 3isl_A          351 ASSFGP-------------------LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNA  392 (416)
T ss_dssp             BCCCST-------------------TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTTC
T ss_pred             ecCCCC-------------------CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcCC
Confidence            877421                   124899999966656666 99999999999987643

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=100.00  E-value=4.9e-37  Score=288.94  Aligned_cols=332  Identities=15%  Similarity=0.207  Sum_probs=262.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~   79 (397)
                      +|+++++++++++++++.+.+..        .  ++....+...++++.+++++|++++ ++++|+|+++|+.+++.++.
T Consensus        37 l~~~~~~~~~~~v~~a~~~~~~~--------~--~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~  106 (393)
T 1vjo_A           37 LLGPGPSNAHPSVLQAMNVSPVG--------H--LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV  106 (393)
T ss_dssp             ECSSSCCCCCHHHHHHHSSCCCC--------T--TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC
T ss_pred             eccCCCCCCCHHHHHHHhccccc--------c--cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc
Confidence            46788888999999998775532        1  1223457888999999999999888 89999999999999999886


Q ss_pred             hhhccCCCEEEEcCCCChh--hHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHH
Q psy8850          80 HFYKKRGKHIITVQTEHKS--VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s--~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~  156 (397)
                          ++|++|+++.++|++  +...+...   |.+++.+|.+.++.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus       107 ----~~gd~Vl~~~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~  179 (393)
T 1vjo_A          107 ----EPGDVVLIGVAGYFGNRLVDMAGRY---GADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLE  179 (393)
T ss_dssp             ----CTTCEEEEEESSHHHHHHHHHHHHT---TCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred             ----CCCCEEEEEcCChhHHHHHHHHHHc---CCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHH
Confidence                789999999999998  65555544   99999999988888999999999988 899999999999999999999


Q ss_pred             HHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc---cccCCc-----
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ---IHGGGH-----  227 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~---~~~~~~-----  227 (397)
                      +|.++|+++|+++|+|++|+++..++++...++|++++|+|| +.++.|+|+++++++..+.+...   ..+...     
T Consensus       180 ~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (393)
T 1vjo_A          180 GVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLL  259 (393)
T ss_dssp             THHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHH
T ss_pred             HHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhh
Confidence            999999999999999999998877777777788999999999 66676789999987654443211   111100     


Q ss_pred             -----cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850         228 -----EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F  300 (397)
Q Consensus       228 -----~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~  300 (397)
                           ...+..++++...+.++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..+.....+.++.+.++ +
T Consensus       260 ~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~  337 (393)
T 1vjo_A          260 GKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED-I-GLSLHVEKEYRLPTLTTVCIPDG  337 (393)
T ss_dssp             HHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEECCTT
T ss_pred             hhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCccccCCcEEEEEcCCC
Confidence                 01223347788888888889988644 5888999999999999999998 5 766655432223456677775 4


Q ss_pred             CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHH
Q psy8850         301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .+..++.+.|.   ||.+.+|..+..                   .+++||++ +..++++++++++++|++++
T Consensus       338 ~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          338 VDGKAVARRLLNEHNIEVGGGLGELA-------------------GKVWRVGLMGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             CCHHHHHHHHHHHHCEECEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhCCEEEecCccccC-------------------CCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence            56777877774   899988864321                   38899995 44467888999999999875

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=100.00  E-value=7.3e-37  Score=288.03  Aligned_cols=337  Identities=16%  Similarity=0.205  Sum_probs=260.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++.++.++++.+++++.+.+..        .+  .+.......++++.++++++.+++ ++++++|+++|+.+++.++. 
T Consensus        22 ~~~~p~~~~~~v~~a~~~~~~~--------~~--~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-   90 (396)
T 2ch1_A           22 MGPGPSNCSKRVLTAMTNTVLS--------NF--HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-   90 (396)
T ss_dssp             CSSSSCCCCHHHHHHTTSCCCC--------TT--CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-
T ss_pred             ecCCCCCCCHHHHHHhcccccc--------CC--ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc-
Confidence            4556667788888887654321        11  223345688999999999999887 79999999999999999886 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                         ++||+|+++.++|+++.. ...+...|.+++.++.+.++.+|++++++++++ ++++|++++++||||.+.|+++|.
T Consensus        91 ---~~gd~vl~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~  166 (396)
T 2ch1_A           91 ---EEGDRVLIAVNGIWAERA-VEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVG  166 (396)
T ss_dssp             ---CTTCEEEEEESSHHHHHH-HHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred             ---CCCCeEEEEcCCcccHHH-HHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHH
Confidence               789999999999999741 122333499999999988888999999999988 899999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc-------ccc-------
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-------IHG-------  224 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~-------~~~-------  224 (397)
                      ++|++||+++|+|++|+++..++++..+++|++++|+|| ++++.|+|+++++++....+...       ..+       
T Consensus       167 ~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (396)
T 2ch1_A          167 QICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNY  246 (396)
T ss_dssp             HHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHH
T ss_pred             HHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHh
Confidence            999999999999999998887777777788999999999 77788899999987544333211       111       


Q ss_pred             C--CccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC-CCCCceEEEEec-
Q psy8850         225 G--GHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFN-  299 (397)
Q Consensus       225 ~--~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-  299 (397)
                      +  .....+..++++...+.++.++++.+. ++++++.+++.++++++.+.|++ + ++.+..+.. ...+.++.+.++ 
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~  324 (396)
T 2ch1_A          247 WGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK-M-GLDIFVKDPRHRLPTVTGIMIPK  324 (396)
T ss_dssp             TTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-H-TCCBSSCSGGGBCTTEEEEECCT
T ss_pred             hhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCeeccCCccccCCceEEEEcCC
Confidence            0  001234556788888888888888764 45888999999999999999998 5 766665433 123446777775 


Q ss_pred             CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         300 FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       300 ~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +.+..++.+.|.   ||.+.+|..+.                   ..+++||++ +..++++++++++++|++++++++
T Consensus       325 ~~~~~~~~~~L~~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~  384 (396)
T 2ch1_A          325 GVDWWKVSQYAMNNFSLEVQGGLGPT-------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH  384 (396)
T ss_dssp             TCCHHHHHHHHHHHHCBCCBCCCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhCCEEEecCcccc-------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence            456778887773   88887764221                   237899999 555689999999999999987664

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=100.00  E-value=6.6e-37  Score=287.84  Aligned_cols=338  Identities=16%  Similarity=0.216  Sum_probs=263.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++.++.++++++++++.+....         + ..+...+...+++++++++++.+.+ ++++++|+++|+.++++++. 
T Consensus        27 ~~p~p~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-   95 (393)
T 3kgw_A           27 LGPGPSNLAPRVLAAGSLRMIG---------H-MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-   95 (393)
T ss_dssp             CSSSCCCCCHHHHHHTTCCCCC---------T-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-
T ss_pred             ccCCCCCCCHHHHHHhcccccC---------c-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-
Confidence            4566777888888887653211         1 1233456788999999999998755 49999999999999999886 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                         ++||+|+++.+.|.+.. ....+...|.+++.+|.+.++.+|+++|++++++ ++++|++++++||||.+.|+++|.
T Consensus        96 ---~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~  171 (393)
T 3kgw_A           96 ---EPGDSFLTGTNGIWGMR-AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFG  171 (393)
T ss_dssp             ---CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred             ---CCCCEEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHH
Confidence               79999999988775432 1222333499999999988888999999999998 999999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccc----------------
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI----------------  222 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~----------------  222 (397)
                      ++|++||+++|+|++|+.+..+++....++|++++|+|| ++|+.|+|+++++++..+.+....                
T Consensus       172 ~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (393)
T 3kgw_A          172 ELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKL  251 (393)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHH
T ss_pred             HHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHh
Confidence            999999999999999998887777777789999999999 778888999999877554443221                


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC-CCCCCceEEEEec-
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN-  299 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~-  299 (397)
                      .++....++..++++...++++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..+. ....+.++++.++ 
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~  329 (393)
T 3kgw_A          252 WGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQE-M-GLKFFVKDPEIRLPTITTVTVPA  329 (393)
T ss_dssp             TTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCSSEEEEECCT
T ss_pred             hhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCChhhcCCeEEEEeCCC
Confidence            1111223455678888888888888887755 4889999999999999999999 5 66655322 2233456667775 


Q ss_pred             CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         300 FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       300 ~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      +.+..++.+.|.   ||.+.+|..+.                   .++++||++ +..++++++++++++|+++++++++
T Consensus       330 ~~~~~~~~~~l~~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~  390 (393)
T 3kgw_A          330 GYNWRDIVSYVLDHFSIEISGGLGPT-------------------EERVLRIGLLGYNATTENVDRVAEALREALQHCPK  390 (393)
T ss_dssp             TBCHHHHHHHHHHHHCEECBCCCGGG-------------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred             CCCHHHHHHHHHHhCCEEEeCCcccC-------------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence            456778887774   88888875322                   247999998 6556999999999999999987653

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=100.00  E-value=4.3e-37  Score=282.79  Aligned_cols=332  Identities=12%  Similarity=0.039  Sum_probs=256.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCc---chhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChhHHHHHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNH---IYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAIK   76 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~-~~g~t~a~~~~l~   76 (397)
                      -+++++++|++|++++.+.+...++|+.+ .+   ..+..+.+.++++|+.++++++++. .+|+| |+|+|+++++++.
T Consensus         9 f~pgpt~~~~~V~~a~~~~~~~~~~~~~s-~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~   87 (361)
T 3m5u_A            9 FSAGPSTLPLEILEQAQKELCDYQGRGYS-IMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPM   87 (361)
T ss_dssp             CCSSSCCCCHHHHHHHHHTSSSGGGSSSC-GGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred             ecCCCCCCcHHHHHHHHHHHHhcccCCce-eeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHH
Confidence            36789999999999999999877777765 32   2355778899999999999999964 47888 9999999999999


Q ss_pred             HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCC--CCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850          77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL--ITLSQLEEKICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~--~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                      ++.     +++++++....+.+. .....+.+.|.+++.++.+.++.  +++++ +  +++++++|.+++.+|.+|++.|
T Consensus        88 ~~~-----~~~~~~~i~~~~~~~-~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~~t~lv~~~~~e~~tG~~~~  158 (361)
T 3m5u_A           88 NLA-----LNGVCEYANTGVWTK-KAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSDNADYAYICSNNTIYGTQYQ  158 (361)
T ss_dssp             HHC-----CSSCEEEEECSHHHH-HHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCTTSSEEEEESEETTTTEECS
T ss_pred             hcC-----CCCeEEEEeCCHHHH-HHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCCCCCEEEEeCCCCCcceeCC
Confidence            876     345442212223333 23344455699999999998774  56666 4  8889999999999999999877


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCcccc----ccccCC--cc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA----QIHGGG--HE  228 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~----~~~~~~--~~  228 (397)
                      .     +++ +|+++++|+++++|..++|+.  ..|++++|.||++||.|+|+++++++..+.+.+    .+.++.  ..
T Consensus       159 ~-----i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~  230 (361)
T 3m5u_A          159 N-----YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAE  230 (361)
T ss_dssp             S-----CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHH
T ss_pred             c-----ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCceeehHHHhh
Confidence            2     344 499999999999999999998  479999999997799999999999877655433    221111  12


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCceEEEEecCC-C-h
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNFI-E-G  303 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-~  303 (397)
                      ...+.+|+|+..++++.++++++.+  |++++.++..++++++++.|++ ++++ .+..++..+.+.++.|.+++. . .
T Consensus       231 ~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~  309 (361)
T 3m5u_A          231 NQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL-SNGFYKGHADKKDRSLMNVSFNIAKNKDLE  309 (361)
T ss_dssp             TTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHT-STTSEEESSCGGGBCSSEEEEEESSCTTHH
T ss_pred             cCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-CCCeeeccCCHHHcCCeEEEEECCCchhhh
Confidence            3456689999999999999999876  5999999999999999999999 7765 554443344467888888751 1 2


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .++...|.  ||.+..|...                     .+.+|+|+..++|.+|||+++++|+++.++.
T Consensus       310 ~~~~~~L~~~gI~~~~g~~~---------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~~  360 (361)
T 3m5u_A          310 PLFVKEAEEAGMIGLKGHRI---------------------LGGIRASIYNALNLDQVKTLCEFMKEFQGKY  360 (361)
T ss_dssp             HHHHHHHHHTTEECCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEecCCCc---------------------cCeEEEEccCCCCHHHHHHHHHHHHHHHHhc
Confidence            45666665  8888766421                     1559999999999999999999999988763

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=100.00  E-value=8.8e-36  Score=282.49  Aligned_cols=347  Identities=14%  Similarity=0.155  Sum_probs=262.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++.+++|+.+++++.+.+...++++.. .........+...++++.+++++|+++++|++++|+++++.+++.++..
T Consensus        32 ld~~~~~~~~~~v~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~  110 (416)
T 1qz9_A           32 LDGNSLGARPVAALARAQAVIAEEWGNGLI-RSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALR  110 (416)
T ss_dssp             CCTTTSCCCBTTHHHHHHHHHHTCCCCCGG-GHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHH
T ss_pred             ecCCCcCCCcHHHHHHHHHHHHHHHhccCc-cccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcc
Confidence            688888899999999999998764443321 0011111235778899999999999888999999999999988887652


Q ss_pred             hh--ccCCCE-EEEcCCCChhhHHHHHHHhh-C--CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850          81 FY--KKRGKH-IITVQTEHKSVLDSIRKLEN-D--GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        81 ~~--~~~g~~-vl~~~~~~~s~~~~~~~~~~-~--g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                      ..  .++||+ |+++.++|+++..++..+.. .  |.+++.+|.       +++|++++++++++|++++++||||.+.|
T Consensus       111 ~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~~~~~~v~~~~~~nptG~~~~  183 (416)
T 1qz9_A          111 VQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAIDQDTAVVMLTHVNYKTGYMHD  183 (416)
T ss_dssp             HHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCSTTEEEEEEESBCTTTCBBCC
T ss_pred             cccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhCCCceEEEEeccccCcccccC
Confidence            10  035665 67777899988877655433 2  889998886       78999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCc-eEEEEecCCCCccccccccCC-c----
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGI-GALYIRRNPRTRIEAQIHGGG-H----  227 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~-g~~~~~~~~~~~~~~~~~~~~-~----  227 (397)
                      +++|.++|++||+++|+|++|+.|..+.++..+++|++++|+|| ++++.|+ |+++++++..+.+.+...++. .    
T Consensus       184 l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~  263 (416)
T 1qz9_A          184 MQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQF  263 (416)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTS
T ss_pred             HHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCcccccc
Confidence            99999999999999999999998877666555578999999999 5566677 999999887776665433310 0    


Q ss_pred             -----------cccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcC--cEEEeCCCCC-CCCc
Q psy8850         228 -----------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIE--EIYINGDMNN-RIPH  292 (397)
Q Consensus       228 -----------~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~-~~~~  292 (397)
                                 ...+..++++...++++.++++.+. ++++++.+++.++++++.+.|++.++  ++.+..+... ..++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~  343 (416)
T 1qz9_A          264 AMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGS  343 (416)
T ss_dssp             CCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCS
T ss_pred             CCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCC
Confidence                       1245667888888888888998875 46888999999999999999988325  7777655321 1245


Q ss_pred             eEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCCHHHHHHHHHHHHHH
Q psy8850         293 NLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       293 ~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~  369 (397)
                      ++++.+++  ..++.+.|.  ||.+...                       ..+++||+++ ..++++++++++++|+++
T Consensus       344 ~~~~~~~~--~~~l~~~l~~~gi~~~~~-----------------------~~~~lRis~~~~~~t~~~i~~~~~~l~~~  398 (416)
T 1qz9_A          344 HVSFEHPE--GYAVIQALIDRGVIGDYR-----------------------EPRIMRFGFTPLYTTFTEVWDAVQILGEI  398 (416)
T ss_dssp             EEEEECTT--HHHHHHHHHTTTEECEEE-----------------------TTTEEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEecCC--HHHHHHHHHhCCcEeccC-----------------------CCCeEEEeCcccCCCHHHHHHHHHHHHHH
Confidence            66666653  667777765  6654311                       2388999998 478999999999999999


Q ss_pred             HHHHHhcCccc
Q psy8850         370 VKKLRELSPLW  380 (397)
Q Consensus       370 ~~~~~~~~~~~  380 (397)
                      +++..-+.|.+
T Consensus       399 ~~~~~~~~~~~  409 (416)
T 1qz9_A          399 LDRKTWAQAQF  409 (416)
T ss_dssp             HHHTTTC----
T ss_pred             Hhccccccccc
Confidence            98766566665

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=1e-35  Score=276.62  Aligned_cols=333  Identities=14%  Similarity=0.118  Sum_probs=259.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++.++.++|+++++++.+.+.....   . .....+...+...++++.+++++|.+ ++++++++|+++|+.+++.++. 
T Consensus         8 ~~p~p~~~~~~v~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~-   82 (362)
T 3ffr_A            8 FTPGPSELYPTVRQHMITALDEKIG---V-ISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV-   82 (362)
T ss_dssp             ECSSSCCCCTTHHHHHHHHHHTTTT---T-SCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC-
T ss_pred             ccCCCcCCCHHHHHHHHHHhcCCcc---C-cCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc-
Confidence            4567778899999999888765210   0 11223455678899999999999985 5679999999999999999987 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                         ++  .+++..+.|++. .....+...|.+++.++.+.++.+|+++++  +++++++|++++++||||.+.|+++|.+
T Consensus        83 ---~~--~~i~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~  154 (362)
T 3ffr_A           83 ---EK--KSFHCVNGSFSK-RFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINT  154 (362)
T ss_dssp             ---SS--EEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTT
T ss_pred             ---CC--cEEEEcCcHHHH-HHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHH
Confidence               55  444444444442 222333445999999999888889999999  7889999999999999999999999999


Q ss_pred             HHHhc-CcEEEEecccccCccccccCcccccEEEeccccccC-CCCceEEEEecCCCCccccccccCCcc----------
Q psy8850         161 LCRSK-GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHE----------  228 (397)
Q Consensus       161 l~~~~-gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~----------  228 (397)
                      +|++| |+++|+|++|+.+..+.+...  .|++++|+||+++ +.|+|+++++++....+.+...|++..          
T Consensus       155 la~~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~  232 (362)
T 3ffr_A          155 FRDKNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSML  232 (362)
T ss_dssp             SGGGSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHH
T ss_pred             HHHhCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHH
Confidence            99999 999999999998887766653  8999999999554 888999999987666555443322110          


Q ss_pred             ----ccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC-CCCCCceEEEEecCCC
Q psy8850         229 ----YGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFNFIE  302 (397)
Q Consensus       229 ----~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  302 (397)
                          .....++++...+.++.++++.+.+ +++++.+++.++++++.+.|++ ++++.+..+. ......++++.+++ +
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~-~  310 (362)
T 3ffr_A          233 EKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIES-SKVFSFGVEDAKLRSMTTIVANTTM-L  310 (362)
T ss_dssp             HHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-CSSEEESSSCGGGBCSSEEEEEESS-C
T ss_pred             HHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-ccCceeccCChhhcCCceEEEecCC-C
Confidence                1222677888888888888887654 4889999999999999999998 8899887632 22335677778876 7


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ..++.+.|.  ||.+.+|..+.                   .+++|||+++..++++++++++++|++++
T Consensus       311 ~~~~~~~l~~~gi~~~~g~~~~-------------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          311 PGEINKILEPFDMAVGAGYGSK-------------------KETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             HHHHHHHHGGGTEEEEECSGGG-------------------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCeEEecCcccc-------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            788888887  89998874332                   23889999999899999999999998764

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=100.00  E-value=2.3e-36  Score=281.29  Aligned_cols=330  Identities=14%  Similarity=0.148  Sum_probs=252.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHH-HHHHHHHHHHHHHhCCCC--CcEEEeCChhHHHHHHHHHhH
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE-KAIEKARNEVAQLIYADP--REIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~--~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      +.++.++|+++++++.+.+          .+..+ ... +...++++.++++++.+.  +++++++|+++|+.+++.++.
T Consensus         9 ~~gp~~~~~~v~~a~~~~~----------~~~~~-~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~   77 (366)
T 1m32_A            9 TPGPLTTSRTVKEAMLFDS----------CTWDD-DYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL   77 (366)
T ss_dssp             SSSSCCCCHHHHHTTCCCC----------CTTSH-HHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC
T ss_pred             cCCCcCCCHHHHHHHhhhh----------cCCCH-HHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc
Confidence            3445567899999887632          11111 122 567889999999999432  369999999999999999987


Q ss_pred             hhhccCCCEEEEcC-CCChhh-HHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC--CceEEEEecccCcccccccH
Q psy8850          80 HFYKKRGKHIITVQ-TEHKSV-LDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        80 ~~~~~~g~~vl~~~-~~~~s~-~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--~~~~v~~~~~~~~tG~~~~l  155 (397)
                          ++|++|++.. ++|++. .......   |.+++.+|.+.++.+|++++++++++  ++++|++++++||||.+.|+
T Consensus        78 ----~~gd~vi~~~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l  150 (366)
T 1m32_A           78 ----GPQDKVLIVSNGAYGARMVEMAGLM---GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPI  150 (366)
T ss_dssp             ----CTTCCEEEEESSHHHHHHHHHHHHH---TCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred             ----CCCCeEEEEeCCCccHHHHHHHHHh---CCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCH
Confidence                6888876654 666653 3333444   89999999988888999999999986  58899999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc-------
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-------  227 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-------  227 (397)
                      ++|.++|++||+++|+|++|+.+..++++...++|++++|+|| ++|+.|+|+++++++..+.+.....+...       
T Consensus       151 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 1m32_A          151 DEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWR  230 (366)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHh
Confidence            9999999999999999999998877777666679999999999 67888899999998765555432111000       


Q ss_pred             ----cccccCCCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--
Q psy8850         228 ----EYGLRSGTLATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--  299 (397)
Q Consensus       228 ----~~~~~~~~~~~~~~~~l~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--  299 (397)
                          ......++++...++++.++++.+.+.  ++++.+++.++++++.+.|++ + ++.+..++....+.++++.++  
T Consensus       231 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~~  308 (366)
T 1m32_A          231 CMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA-L-GFNTLLDDELHSPIITAFYSPED  308 (366)
T ss_dssp             HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEECCCC
T ss_pred             hhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH-C-CCeeccCchhcCceEEEEEcCcc
Confidence                001223567788888888899887654  788999999999999999998 5 665554321223457778876  


Q ss_pred             -CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         300 -FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       300 -~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                       +.+..++.+.|.  ||.+.+|..|..                    +++|++++..++++++++++++|++++++
T Consensus       309 ~~~~~~~~~~~l~~~gi~v~~~~~~~~--------------------~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          309 PQYRFSEFYRRLKEQGFVIYPGKVSQS--------------------DCFRIGNIGEVYAADITALLTAIRTAMYW  364 (366)
T ss_dssp             TTCCHHHHHHHHHHTTEECEECCCSSS--------------------CEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHHHHCCEEEECCcCCCC--------------------CEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence             456778887776  899888765432                    88999999988999999999999987643

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=5.3e-35  Score=275.04  Aligned_cols=326  Identities=17%  Similarity=0.130  Sum_probs=250.3

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh----
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF----   81 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~----   81 (397)
                      .+++++.+.+++.+++.....++.     ..+...+...+++++++++++++++++++++|+++|+.+++.++...    
T Consensus        39 ~~~~~~~v~~a~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~  113 (397)
T 3f9t_A           39 CSNVLPITRKIVDIFLETNLGDPG-----LFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREK  113 (397)
T ss_dssp             CCCCCTHHHHHHHHHTTCCTTSGG-----GBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHhhcCCCcc-----cChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhh
Confidence            456778999999998876443322     11245677888999999999999889999999999999999988742    


Q ss_pred             -----hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccH
Q psy8850          82 -----YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        82 -----~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l  155 (397)
                           ...+||+|+++.++|+++...+...   |.+++.+|.++++.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus       114 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l  190 (397)
T 3f9t_A          114 RRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNI  190 (397)
T ss_dssp             HHTTCCCCSSCEEEEETTCCTHHHHHHHHH---TCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCH
T ss_pred             hhhcccCCCCeEEEECCcchhHHHHHHHHc---CceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCH
Confidence                 1124899999999999999988887   99999999998899999999999998 99999999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc--------------ccccCcccccEEEecccc-ccCCCCceEEEEecCCCC-cc-
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI--------------DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT-RI-  218 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~--------------~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~-~~-  218 (397)
                      ++|.++|++||+++|+|++|+.+..              ++++.. ++|++++|+|| +.++.++|+++++++... .+ 
T Consensus       191 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~  269 (397)
T 3f9t_A          191 EELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLD  269 (397)
T ss_dssp             HHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTC
T ss_pred             HHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhc
Confidence            9999999999999999999985433              334444 78999999999 546667899998765332 22 


Q ss_pred             --ccccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEE
Q psy8850         219 --EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN  295 (397)
Q Consensus       219 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  295 (397)
                        .+...++.  .....++.+.....++.+++..+. .+++++.+++.++++++.+.|++ + ++.+..++.   .+++.
T Consensus       270 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~  342 (397)
T 3f9t_A          270 VDAPYLTETR--QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE-N-NFKPVIEPI---LNIVA  342 (397)
T ss_dssp             EECTTSSSSE--ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCCS---SSEEE
T ss_pred             cCCccccCCC--ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEcCCC---ccEEE
Confidence              22221111  111123333345556666666553 35788899999999999999999 5 766554432   45656


Q ss_pred             EEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         296 ISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       296 ~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +.++.  ..++.+.|.  ||.+.++..                      ++++||+++..++++++++++++|+++++
T Consensus       343 ~~~~~--~~~~~~~l~~~gi~v~~~~~----------------------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          343 IEDED--YKEVCKKLRDRGIYVSVCNC----------------------VKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             EECTT--HHHHHHHHHHTTCBCEECSS----------------------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             EEeCC--HHHHHHHHHhCCeEEeccCC----------------------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            66543  567777765  788776531                      28999999988999999999999998764

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=100.00  E-value=3e-35  Score=275.01  Aligned_cols=331  Identities=14%  Similarity=0.118  Sum_probs=253.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChhHHHHHHHHHhHh
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-E-IIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~-i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++++.++|+++++++.+.+..         +. .....+...++++++++++|++++ + +++++|+++|++++++++. 
T Consensus        24 ~pgp~~~~~~v~~a~~~~~~~---------~~-~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-   92 (376)
T 3f0h_A           24 TVGPVMSSEEVRAIGAEQVPY---------FR-TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-   92 (376)
T ss_dssp             SSSSCCCCHHHHHHHTSCCCC---------CS-SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-
T ss_pred             cCCCCCCcHHHHHHhcCCCCC---------CC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-
Confidence            456677899999988765421         11 234456788999999999999753 4 5558999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                         ++||+|++..+.|++.. ........|.++..++.+.++.+|++++++++++++++|++++++||||.+.|+++|.+
T Consensus        93 ---~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~  168 (376)
T 3f0h_A           93 ---TKKDKVLVIDGGSFGHR-FVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGE  168 (376)
T ss_dssp             ---CTTCCEEEEESSHHHHH-HHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHH
T ss_pred             ---CCCCeEEEEeCChhhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHH
Confidence               78999999988777643 22344445999999999888889999999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC-c---------cc
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG-H---------EY  229 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~-~---------~~  229 (397)
                      +|++||+++|+|++++.+..++++..+++|++++|+|| +.|+.|+|+++++++....+.+...... .         ..
T Consensus       169 l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (376)
T 3f0h_A          169 FCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQER  248 (376)
T ss_dssp             HHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTT
T ss_pred             HHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhccc
Confidence            99999999999999998887777666678999999999 5548889999998776554433211110 0         00


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLL  307 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (397)
                      .....+++...++++.++++.+.+  +++++.+++.++++++.+.|++ + ++.+..+.  ....++.+..++.+..++.
T Consensus       249 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~--~~~~~~~~~~~~~~~~~l~  324 (376)
T 3f0h_A          249 GQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKD-L-PFELVSES--PANGVTSVHPTTANAYDIF  324 (376)
T ss_dssp             TCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-S-SEEECCSS--BBTTEEEEEESSSCHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCccCccc--cCceEEEEeCCCCCHHHHH
Confidence            122345666666788888887765  4888999999999999999998 5 56665432  1234444555556777887


Q ss_pred             HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +.|.   ||.+.+|..                   ...++++||+++..++++++++++++|+++++
T Consensus       325 ~~l~~~~gi~v~~g~~-------------------~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~  372 (376)
T 3f0h_A          325 LKLKDEYGIWICPNGG-------------------EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQK  372 (376)
T ss_dssp             HHHHHHSSEECEECCG-------------------GGTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCEEEecCcc-------------------ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            7775   788887621                   11248899999988999999999999999875

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=100.00  E-value=8.1e-35  Score=270.78  Aligned_cols=335  Identities=11%  Similarity=0.069  Sum_probs=246.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCC--CCcchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChhHHHHHHHH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPAS--RNHIYGWTAEKAIEKARNEVAQLIYADPR-E-IIWTSGATESNNLAIK   76 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~-i~~~~g~t~a~~~~l~   76 (397)
                      +|+++++++|+.+++++.+.+....+++.+  .....++...+..+++++.+++++|++++ + +++|+|+++|+.+++.
T Consensus         7 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~   86 (362)
T 2c0r_A            7 NFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPM   86 (362)
T ss_dssp             ECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHH
T ss_pred             eccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHH
Confidence            478899999999999999988653222111  01112334556788999999999999864 5 5678999999999999


Q ss_pred             HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC---CC-CCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850          77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NG-LITLSQLEEKICSDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~---~~-~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~  152 (397)
                      ++.    ++||+|++..+.|.+... ...+...| +++.++.+.   .+ .+|.++++  ++++|++|++++++||||.+
T Consensus        87 ~l~----~~gd~vl~~~~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~tG~~  158 (362)
T 2c0r_A           87 NFL----KEGQTANYVMTGSWASKA-LKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETIEGAQ  158 (362)
T ss_dssp             HHC----CTTCEEEEEECSHHHHHH-HHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETTTTEE
T ss_pred             hcC----CCCCeEEEEecCcHhHHH-HHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCcccee
Confidence            987    789999887766555321 12222238 999998762   22 35666654  67889999999999999996


Q ss_pred             -ccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC-----
Q psy8850         153 -QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-----  226 (397)
Q Consensus       153 -~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~-----  226 (397)
                       .|+++|      +|+++++|++|+.+..++++..  .|++++|+||++|+.|+|+++++++..+.+.+......     
T Consensus       159 ~~~l~~i------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~~~~~~  230 (362)
T 2c0r_A          159 FKAFPDT------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTY  230 (362)
T ss_dssp             CSSCCCC------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHH
T ss_pred             ccccccc------CCCEEEEEChhhccCCccchhH--CcEEEEeccccccCcCcEEEEEcHHHHhhccccCchHHhHHHH
Confidence             667776      8999999999999887776654  48999999997788899999999887766643211000     


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCceEEEEecC-CC
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF-IE  302 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~  302 (397)
                      .......++++...++++.++++.+.+  +++++.+++.++++++.+.|++ ++++ .+..++....+..+++.++. .+
T Consensus       231 ~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (362)
T 2c0r_A          231 VKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ-SGGFYRGCVDVDSRSDMNITFRLASEEL  309 (362)
T ss_dssp             HHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSSEESSCGGGBCSSEEEEECSCHHH
T ss_pred             hhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-cCCccccCCChHHcCCcEEEEEcCCcch
Confidence            011233568888888999999998766  6899999999999999999998 6535 66443222224556666653 34


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..++.+.|.  ||.+.+|..+                     .+.||||++.+++.+++++++++|+++++++
T Consensus       310 ~~~~~~~L~~~gi~~~~g~~~---------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          310 EKEFVKASEQEGFVGLKGHRS---------------------VGGLRASIYNAVPYESCEALVQFMEHFKRSR  361 (362)
T ss_dssp             HHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCeeccCCCC---------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            567777775  8877665321                     1579999999899999999999999987654

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=4.2e-35  Score=274.81  Aligned_cols=335  Identities=13%  Similarity=0.134  Sum_probs=248.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC----CCcEEEeCChhHHHHHHHHHh
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD----PREIIWTSGATESNNLAIKGA   78 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~i~~~~g~t~a~~~~l~~l   78 (397)
                      .+++.++++++++++.+....         + ..........+++++++++++..    ++++++++|+|+|+.+++.++
T Consensus        10 ~p~p~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~   79 (385)
T 2bkw_A           10 IPGPIILSGAVQKALDVPSLG---------H-TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNF   79 (385)
T ss_dssp             SSSSCCCCHHHHHTTSCCCCC---------T-TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHH
T ss_pred             cCCCcCchHHHHHHHhccccc---------c-CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHH
Confidence            455566778888776554321         1 12233456777889999998863    568999999999999999987


Q ss_pred             HhhhccCCCEEEEcCC-CChhhHHHHHHHhhCCcEEEEecc-CCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccH
Q psy8850          79 AHFYKKRGKHIITVQT-EHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~-~~~s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l  155 (397)
                      ... .++||+|++.++ .|+...  ...+...|.+++.++. +.++.+|+++|++++++ ++++|++++++||||.+.|+
T Consensus        80 ~~~-~~~gd~vlv~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l  156 (385)
T 2bkw_A           80 ILS-KAPNKNVLVVSTGTFSDRF--ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDL  156 (385)
T ss_dssp             SCT-TCSCCEEEEECSSHHHHHH--HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCH
T ss_pred             hcc-CCCCCeEEEEcCCcchHHH--HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCH
Confidence            521 147899887744 343332  1223334999999999 77888999999999987 89999999999999999999


Q ss_pred             HHHHHHHHhc--CcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCC-cccc------ccccC
Q psy8850         156 LEIGELCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT-RIEA------QIHGG  225 (397)
Q Consensus       156 ~~i~~l~~~~--gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~-~~~~------~~~~~  225 (397)
                      ++|.++|++|  |+++|+|++|+.+..++++..+++|++++|+|| ++|+.|+|+++++++... .+.+      ...++
T Consensus       157 ~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~  236 (385)
T 2bkw_A          157 KAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFS  236 (385)
T ss_dssp             HHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTT
T ss_pred             HHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceee
Confidence            9999999999  999999999998887777766789999999999 777888999999876544 3321      00000


Q ss_pred             ------------CccccccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hhhcCcEEEeCCC-CC-C
Q psy8850         226 ------------GHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGL-MESIEEIYINGDM-NN-R  289 (397)
Q Consensus       226 ------------~~~~~~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~-~~-~  289 (397)
                                  ........++++...++++.++++.+.+. ++++.+++.++++++.+.| ++ + ++.+..+. .. .
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~-g~~~~~~~~~~~~  314 (385)
T 2bkw_A          237 SLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG-L-QLTSVSRYPSNMS  314 (385)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-T-CCEESSCSSSTTB
T ss_pred             cHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHh-c-CceecccCccccc
Confidence                        00011224578888888888899887654 8889999999999999999 88 6 77776432 11 2


Q ss_pred             CCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe-eC---CCCCHHHHHHHH
Q psy8850         290 IPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IG---RFTTEKEIDFTI  363 (397)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~-~~---~~~~~~~i~~~~  363 (397)
                      .+.++++.+++  ..++.+.|.  ||.+.+|..+.                  ...+++||+ ++   ..++++++++++
T Consensus       315 ~~~~~~~~~~~--~~~~~~~l~~~gi~v~~g~~~~------------------~~~~~iRis~~~~~~~~~~~e~i~~~~  374 (385)
T 2bkw_A          315 AHGLTAVYVAD--PPDVIAFLKSHGVVIAGGIHKD------------------IGPKYIRIGHMGVTACNKNLPYMKNCF  374 (385)
T ss_dssp             CSSCEEEECSC--HHHHHHHHHHTTEECBCCCCTT------------------TGGGEEEECCCGGGTSSTTCTHHHHHH
T ss_pred             CCceEEEecCC--HHHHHHHHHHCCeEEeCCCCcc------------------cCCCEEEEEccccccccCCHHHHHHHH
Confidence            35677777764  667777775  88888775321                  123789999 65   246899999999


Q ss_pred             HHHHHHHHH
Q psy8850         364 KLLKMKVKK  372 (397)
Q Consensus       364 ~~l~~~~~~  372 (397)
                      ++|++++++
T Consensus       375 ~~l~~~~~~  383 (385)
T 2bkw_A          375 DLIKLALQR  383 (385)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHHh
Confidence            999988654

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=100.00  E-value=3.2e-35  Score=273.25  Aligned_cols=334  Identities=11%  Similarity=0.082  Sum_probs=249.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcch---hhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh-hHHHHHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIY---GWTAEKAIEKARNEVAQLIYAD-PREIIWTSGA-TESNNLAIK   76 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~-t~a~~~~l~   76 (397)
                      +++++.++|+.+++++.+.+... .++....+..   .+...+...++++++++++|++ +++|++++|+ |+|+.+++.
T Consensus         7 ~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~   85 (360)
T 1w23_A            7 FNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPM   85 (360)
T ss_dssp             CCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred             ecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHH
Confidence            56777889999999999988653 4444322222   4455678889999999999996 4689999998 999999998


Q ss_pred             HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHH-HhcCCceEEEEecccCccccccc
Q psy8850          77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~-~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                      ++.... +++++|+++.++|.+..    .+...| +++.+|.++ ++.+|++++++ ++++++++|++++++||||.++|
T Consensus        86 ~l~~~~-~~g~~vi~~~~~~~~~~----~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~  159 (360)
T 1w23_A           86 NLLTKG-TIGNYVLTGSWSEKALK----EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ  159 (360)
T ss_dssp             HHCCTT-CEEEEEECSHHHHHHHH----HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS
T ss_pred             HhcCCC-CcccEEEecchhHHHHH----HHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc
Confidence            887311 23567777766555422    223349 999999875 66789999999 89889999999999999999987


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCcc------
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHE------  228 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~------  228 (397)
                           +++++||++||+|++|+.+..+.++..+  |++++|+||.+|+.|+|+++++++..+.+.+.. ++...      
T Consensus       160 -----~i~~~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~  231 (360)
T 1w23_A          160 -----NFPEINHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQV-PTMLQYATHIK  231 (360)
T ss_dssp             -----SCCCCCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTC-CGGGCHHHHHH
T ss_pred             -----cccccCCceEEEechhhcCCCCcCcccC--CEEEEEcccccCCCCcEEEEEcHHHHhhcccCC-cchhhhhhhhh
Confidence                 3344899999999999988776666543  899999999778888999999987665554432 11110      


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCceEEEEecCC-ChH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNFI-EGE  304 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~  304 (397)
                      .++..++++...++++.++++.+.+  +++++.++++++++++.+.|++ ++++ .....+....+.++++.+++. +..
T Consensus       232 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (360)
T 1w23_A          232 SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE-SNGFYVGHAEKGSRSLMNVTFNLRNEELNQ  310 (360)
T ss_dssp             TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-TTTSSEESSCGGGBCSSEEEEECSSHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-ccCcccccCCchhccCcEEEEEcCCCccHH
Confidence            2244567888888888889988765  5888999999999999999998 7654 433112112244677777642 345


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ++.+.|.  ||.+.+|..+                     .++|||+++..++++++++++++|++++++
T Consensus       311 ~~~~~l~~~gi~~~~~~~~---------------------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          311 QFLAKAKEQGFVGLNGHRS---------------------VGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             HHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCeeeecCCCC---------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            6666664  8877765311                     278999999888999999999999988754

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=100.00  E-value=8.4e-33  Score=264.63  Aligned_cols=347  Identities=13%  Similarity=-0.008  Sum_probs=255.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc-----EEEeCChhHHHHHHHHHhHhhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE-----IIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-----i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      ++++.+.+++.+++.....+     +...+...+...++++++++++|++.++     +++|+|+|+|+.+++.++...+
T Consensus        53 ~~~~~v~e~~~~a~~~~~~~-----~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~  127 (452)
T 2dgk_A           53 WDDENVHKLMDLSINKNWID-----KEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW  127 (452)
T ss_dssp             CCCHHHHHHHHHTTTCBTTC-----TTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhccCCCC-----hhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHH
Confidence            56678888887777542222     2223455677888999999999998765     9999999999999998876321


Q ss_pred             c----cCC-----CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850          83 K----KRG-----KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        83 ~----~~g-----~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~  152 (397)
                      .    .+|     ++|+++. .|.++..++..+   |++++.+|.++ ++.+|+++|+++++++|++|++++++||||.+
T Consensus       128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~---G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~  203 (452)
T 2dgk_A          128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNY  203 (452)
T ss_dssp             HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHT---TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBB
T ss_pred             HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHc---CceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCccc
Confidence            1    133     6999999 999999888777   99999999986 78999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhc------CcEEEEecccccCcc-------ccccCcccccEEEecccc-ccCCCCceEEEEecC-CC-C
Q psy8850         153 QPILEIGELCRSK------GVIFHCDAAQAVGKI-------DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN-PR-T  216 (397)
Q Consensus       153 ~~l~~i~~l~~~~------gi~livD~a~~~~~~-------~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~-~  216 (397)
                      .|+++|.++|+++      |+++|+|++|+.+..       +.++...++|++++|+|| +++|.|+|+++++++ .. .
T Consensus       204 ~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~  283 (452)
T 2dgk_A          204 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQ  283 (452)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCG
T ss_pred             CCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHH
Confidence            9999999999996      999999999986543       123333479999999999 567888999999754 22 2


Q ss_pred             ccc--cccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC-CCCCc
Q psy8850         217 RIE--AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPH  292 (397)
Q Consensus       217 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~  292 (397)
                      .+.  +...++........++.+....+++.+++..+ .+++.++.+++.++++++.+.|++ ++++.+..+.. ....+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~~~  362 (452)
T 2dgk_A          284 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGIP  362 (452)
T ss_dssp             GGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEECCTTTBSS
T ss_pred             HhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEecCCCCCCCeE
Confidence            221  11111111000012344444556666666654 457889999999999999999999 88888875421 01246


Q ss_pred             eEEEEecCC-----ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850         293 NLNISFNFI-----EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL  365 (397)
Q Consensus       293 ~~~~~~~~~-----~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  365 (397)
                      ++.|.++..     +..++.+.|.  |+.+...  ..+..              .....++|++++..+|.+++|++++.
T Consensus       363 ~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~--~~~~~--------------~~~~~~lRis~~~~~t~e~id~li~~  426 (452)
T 2dgk_A          363 AVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF--TLGGE--------------ATDIVVMRIMCRRGFEMDFAELLLED  426 (452)
T ss_dssp             EEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEE--ECSTT--------------CTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEEecCcccccCCHHHHHHHHHhcCCeeeee--eCCcc--------------cCCeEEEEEEecCCCCHHHHHHHHHH
Confidence            777777642     3467888876  7654421  11100              01236899999998999999999999


Q ss_pred             HHHHHHHHHhcCccc
Q psy8850         366 LKMKVKKLRELSPLW  380 (397)
Q Consensus       366 l~~~~~~~~~~~~~~  380 (397)
                      |+++++++++..+.+
T Consensus       427 l~~~~~~~~~~~~~~  441 (452)
T 2dgk_A          427 YKASLKYLSDHPKLQ  441 (452)
T ss_dssp             HHHHHHHHHHCGGGT
T ss_pred             HHHHHHHHHhCCCCC
Confidence            999999888765555

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=1.1e-33  Score=263.18  Aligned_cols=307  Identities=17%  Similarity=0.098  Sum_probs=241.7

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      .++|+.+++++.+.+.....+|           .....++++.++++++++++++++++|+++|+.+++.++.    ++|
T Consensus        44 ~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~----~~g  108 (363)
T 3ffh_A           44 LGTSKKVAAIQANSSVETEIYP-----------DGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL----DTT  108 (363)
T ss_dssp             TCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----STT
T ss_pred             CCCCHHHHHHHHHHHHHhhcCC-----------CcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc----cCC
Confidence            3578999999888664322111           2356889999999999988899999999999999999886    789


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc-
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK-  165 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~-  165 (397)
                      ++|+++.++|+++...+...   |.+++.+|.++++.+|++++++++++++++|++++++||||.+.|.+++.++++.+ 
T Consensus       109 d~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~  185 (363)
T 3ffh_A          109 TNTVMATPTFVQYRQNALIE---GAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVP  185 (363)
T ss_dssp             CEEEEEESSCHHHHHHHHHH---TCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSC
T ss_pred             CEEEEcCCChHHHHHHHHHc---CCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCC
Confidence            99999999999998888777   99999999988888999999999999999999999999999999999999998887 


Q ss_pred             -CcEEEEecccccCcc-----ccc-cCcccccEEEeccccccCCCCc--eEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         166 -GVIFHCDAAQAVGKI-----DIN-IQNYKVDLMSFSAHKIYGPKGI--GALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       166 -gi~livD~a~~~~~~-----~~~-~~~~~~d~~~~s~~K~~g~~g~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                       |+++|+|++|+....     ... ....+.++++.|++|.+|+.|.  |+++++++..+.+.....         ..+.
T Consensus       186 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~---------~~~~  256 (363)
T 3ffh_A          186 SDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP---------PFNT  256 (363)
T ss_dssp             TTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC---------SCCC
T ss_pred             CCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC---------CCCC
Confidence             999999999983221     111 1122456889999997775554  999998765555443321         2346


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcE
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIA  314 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~  314 (397)
                      +.....++.++++.. +++++..+++.++++++.+.|++ ++++.+..+.    +.++++.++. +..++.+.|.  ||.
T Consensus       257 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~----~~~~~~~~~~-~~~~~~~~l~~~gi~  329 (363)
T 3ffh_A          257 TSIGQKLAIEAIKDQ-AFIGECRTSNANGIKQYEAFAKR-FEKVKLYPAN----GNFVLIDLGI-EAGTIFSYLEKNGYI  329 (363)
T ss_dssp             BHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHH-CTTCEECCCC----SSEEEEECSS-CHHHHHHHHHHTTEE
T ss_pred             CHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHhh-CCCceECCCC----CeEEEEECCC-CHHHHHHHHHHCCeE
Confidence            666677776777632 56788899999999999999998 7788776432    3456777764 6777877776  899


Q ss_pred             ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +.+|..+..                   ++++||+++   +++|+++++++|+++
T Consensus       330 v~~g~~~~~-------------------~~~iRis~~---~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          330 TRSGAALGF-------------------PTAVRITIG---KEEDNSAVIALLEKL  362 (363)
T ss_dssp             CEETTTTTC-------------------TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred             EEeCccCCC-------------------CCeEEEECC---CHHHHHHHHHHHHHh
Confidence            998865432                   389999987   899999999999875

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=7.7e-34  Score=266.83  Aligned_cols=324  Identities=15%  Similarity=0.110  Sum_probs=246.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++|+.+++++.+.+.....     .|.  ....+..+++++.+++.+|  +++++|++++|+++|+.+++.++.    ++
T Consensus        40 ~~~~~v~~a~~~~~~~~~~-----~y~--~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~----~~  108 (391)
T 3dzz_A           40 KIAPEIMASMEEKLKVAAF-----GYE--SVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT----SP  108 (391)
T ss_dssp             CCCHHHHHHHHHHHTTCCC-----CCB--CCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS----CT
T ss_pred             CCCHHHHHHHHHHHhcCcC-----CCC--CCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC----CC
Confidence            5789999999998865210     111  1235677788888888888  567789999999999999999987    78


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CC--CCCCHHHHHHHhc-CCceEEEEecccCccccccc---HHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN--GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILEI  158 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~--~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~---l~~i  158 (397)
                      ||+|+++.++|+++...+...   |.+++.+|.+ .+  +.+|+++++++++ +++++|++++++||||.++|   +++|
T Consensus       109 gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i  185 (391)
T 3dzz_A          109 GDQILVQEPVYNMFYSVIEGN---GRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRI  185 (391)
T ss_dssp             TCEEEECSSCCHHHHHHHHHT---TCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred             CCeEEECCCCcHHHHHHHHHc---CCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHH
Confidence            999999999999998887776   9999999985 22  3489999999998 68999999999999999954   7889


Q ss_pred             HHHHHhcCcEEEEecccccCc----cccccCccc---cc--EEEeccccccCCC--CceEEEEe-cCCCCccccccccCC
Q psy8850         159 GELCRSKGVIFHCDAAQAVGK----IDINIQNYK---VD--LMSFSAHKIYGPK--GIGALYIR-RNPRTRIEAQIHGGG  226 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~----~~~~~~~~~---~d--~~~~s~~K~~g~~--g~g~~~~~-~~~~~~~~~~~~~~~  226 (397)
                      .++|++||+++|+|++|+.+.    ...++..+.   .|  +++.|+||.+|+.  ++|+++++ ++..+.+......  
T Consensus       186 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--  263 (391)
T 3dzz_A          186 AELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFL--  263 (391)
T ss_dssp             HHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHH--
T ss_pred             HHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHh--
Confidence            999999999999999998432    222232222   45  9999999955533  47998887 5444444332210  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE  304 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  304 (397)
                          ....+++...+.++.++++...++++++.+++.++++++.+.|++.++++.+..+..   +..+++.++.  .+..
T Consensus       264 ----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  336 (391)
T 3dzz_A          264 ----AGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNA---SYLAWVDISALGMNAE  336 (391)
T ss_dssp             ----HTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCB---SSEEEEECGGGCSCHH
T ss_pred             ----hccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCc---eEEEEEehhhcCCCHH
Confidence                112345666666666777765556788899999999999999988567887775543   3445567763  5778


Q ss_pred             HHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       305 ~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ++.+.| .  ||.+.+|..|...                 ..+++||+++  ++++++++++++|.++++++
T Consensus       337 ~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          337 DFCKYLREKTGLIISAGNGYRGN-----------------GHEFVRINLA--CPKELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             HHHHHHHHHHCEECEESGGGCTT-----------------GGGEEEEECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence            888887 3  9999998766541                 2488999998  58999999999999988764

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=100.00  E-value=2.4e-32  Score=264.00  Aligned_cols=343  Identities=15%  Similarity=0.092  Sum_probs=256.7

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCc---EEEeCChhHHHHHHHHHhHh
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PRE---IIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~---i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++++++.+.+++.+.+.....++..     .+...+...++++++++++|++  +++   ..+++|+++|+.+++.++..
T Consensus        65 t~~~~~~v~~~l~~~~~~~~~~~~~-----~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~  139 (502)
T 3hbx_A           65 TTWMEPECDKLIMSSINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKR  139 (502)
T ss_dssp             CCCCCHHHHHHHHHTTTCBTTCTTT-----CHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhccCCCChhc-----ChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHH
Confidence            4567899999999887664443322     2345677788999999999998  444   34699999999999888764


Q ss_pred             hhc----cCCC-----EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCccc
Q psy8850          81 FYK----KRGK-----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIG  150 (397)
Q Consensus        81 ~~~----~~g~-----~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG  150 (397)
                      .+.    .+|+     +|+++.++|.++...+..+   |++++.+|.+++ +.+|+++++++++++|++|++++++|+||
T Consensus       140 ~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG  216 (502)
T 3hbx_A          140 KWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYF---EVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNG  216 (502)
T ss_dssp             HHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHT---TCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTC
T ss_pred             HHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHc---CceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCC
Confidence            321    1254     9999999999998888777   999999999865 89999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHhc------CcEEEEecccccCc-------cccccCcccccEEEecccc-ccCCCCceEEEEecC-CC
Q psy8850         151 VIQPILEIGELCRSK------GVIFHCDAAQAVGK-------IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN-PR  215 (397)
Q Consensus       151 ~~~~l~~i~~l~~~~------gi~livD~a~~~~~-------~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~  215 (397)
                      .+.|+++|.++|+++      |+++|+|++|+.+.       .+.++...++|++++|+|| +++|.|+|+++++++ ..
T Consensus       217 ~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l  296 (502)
T 3hbx_A          217 EFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDL  296 (502)
T ss_dssp             CBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGS
T ss_pred             cccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHh
Confidence            999999999999999      99999999998443       2333444489999999999 568889999998754 22


Q ss_pred             Ccc---ccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC-CCCCC
Q psy8850         216 TRI---EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRI  290 (397)
Q Consensus       216 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~  290 (397)
                      ...   .+...++........++.+...++++.+++..+ .+++.++.++..+++++|.+.|++ ++++.++.+ +.   
T Consensus       297 ~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~---  372 (502)
T 3hbx_A          297 PEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK-TERFNIVSKDEG---  372 (502)
T ss_dssp             CGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEEECSCSSS---
T ss_pred             hHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCCC---
Confidence            221   111112111111112344444667777777765 457889999999999999999999 888988765 22   


Q ss_pred             CceEEEEecC---CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850         291 PHNLNISFNF---IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL  365 (397)
Q Consensus       291 ~~~~~~~~~~---~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  365 (397)
                      ..++.|.+++   .+..++.+.|.  |+.+....  .+.              .......+||++...++.++++++++.
T Consensus       373 ~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~--~p~--------------~~~~~~~lRisv~~~~t~edid~li~~  436 (502)
T 3hbx_A          373 VPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYT--MPP--------------NAQHITVLRVVIREDFSRTLAERLVID  436 (502)
T ss_dssp             SSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEE--CCT--------------TCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             ceEEEEEecCCCcCCHHHHHHHHHhCCcEEeecc--CCc--------------ccCCceEEEEEeCCCCCHHHHHHHHHH
Confidence            4577777764   34558888886  77664321  110              011236899999999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8850         366 LKMKVKKLREL  376 (397)
Q Consensus       366 l~~~~~~~~~~  376 (397)
                      |+++++++++.
T Consensus       437 L~~~l~~l~~~  447 (502)
T 3hbx_A          437 IEKVMRELDEL  447 (502)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999888763

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=100.00  E-value=1.6e-33  Score=262.24  Aligned_cols=306  Identities=15%  Similarity=0.090  Sum_probs=240.4

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      .++|+.+++++.+.+.....++..           ...++++.+++++++++++|++++|+++|+.+++.++.    ++|
T Consensus        42 ~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~g  106 (365)
T 3get_A           42 FGTPPKAIECLRQNANKAHLYPDD-----------SMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL----NSK  106 (365)
T ss_dssp             TCSCHHHHHHHHHHGGGTTSCCCT-----------TCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----CTT
T ss_pred             CCCCHHHHHHHHHHHHhhccCCCC-----------ChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh----CCC
Confidence            357899999999988754433322           11478999999999988899999999999999999887    789


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHH--
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR--  163 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~--  163 (397)
                      |+|+++.++|+++...+...   |.+++.+|. ++++ +|++++++++++++++|++++++||||.++|.+++.++++  
T Consensus       107 d~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~  182 (365)
T 3get_A          107 NAFLQAGVTFAMYEIYAKQC---GAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGV  182 (365)
T ss_dssp             CEEEECSSCCTHHHHHHHHH---TCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTS
T ss_pred             CEEEEeCCChHHHHHHHHHc---CCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhC
Confidence            99999999999998888877   999999998 6677 9999999999999999999999999999999988888887  


Q ss_pred             hcCcEEEEecccccCc------ccccc----CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccc
Q psy8850         164 SKGVIFHCDAAQAVGK------IDINI----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGL  231 (397)
Q Consensus       164 ~~gi~livD~a~~~~~------~~~~~----~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
                      ++|+++|+|++|+.+.      .+.+.    ...+.++++.|+||.+|+.|  +|+++++++....+......       
T Consensus       183 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~-------  255 (365)
T 3get_A          183 NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAP-------  255 (365)
T ss_dssp             CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCT-------
T ss_pred             CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCC-------
Confidence            7799999999998322      11211    12256789999999655434  79999876555544433211       


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC
Q psy8850         232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK  311 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  311 (397)
                        .+++.....++.++++.. +++++..+++.++++++.+.|++ + ++.+..+.    +.++++.++..+..++.+.|.
T Consensus       256 --~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~l~  326 (365)
T 3get_A          256 --FNVSNLALKAAVAAMDDD-EFTEKTLENNFSQMELYKEFAKK-H-NIKIIDSY----TNFITYFFDEKNSTDLSEKLL  326 (365)
T ss_dssp             --TCSCHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCCS----SSEEEEECSSSCHHHHHHHHH
T ss_pred             --CCcCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHh-C-CCEECCCC----CeEEEEECCCCCHHHHHHHHH
Confidence              235666666666777642 56788899999999999999999 5 77765432    345677776546778887776


Q ss_pred             --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                        ||.+.+|..|.                    .+++||+++   +++++++++++|++++
T Consensus       327 ~~gi~v~~g~~~~--------------------~~~iRis~~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          327 KKGIIIRNLKSYG--------------------LNAIRITIG---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             TTTEECEECGGGT--------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred             HCCEEEEECccCC--------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence              89998885433                    289999987   7999999999998875

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=3.8e-34  Score=268.09  Aligned_cols=319  Identities=17%  Similarity=0.159  Sum_probs=242.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++++.+.+++.+.+.. . +    .|..    .....++++.++++++++++++++++|+++|+.+++.++.    ++|+
T Consensus        38 ~~~~~v~~a~~~~~~~-~-~----~y~~----~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd  103 (381)
T 1v2d_A           38 PPPPFLLEAVRRALGR-Q-D----QYAP----PAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV----GPGD  103 (381)
T ss_dssp             CCCHHHHHHHHHHTTT-S-C----SCCC----TTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC----CTTC
T ss_pred             CCCHHHHHHHHHHHHH-h-c----CCCC----CCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCC
Confidence            4678999999988764 1 1    1211    1235789999999999988899999999999999999886    7899


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccC---CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL  161 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~---~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l  161 (397)
                      +|++++++|+++...+...   |.+++.+|.+   +++.+|++++++++++++++|++++++||||.++|   +++|+++
T Consensus       104 ~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~  180 (381)
T 1v2d_A          104 EVVVLEPFFDVYLPDAFLA---GAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARL  180 (381)
T ss_dssp             EEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             EEEEcCCCchhHHHHHHHc---CCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHH
Confidence            9999999999998776655   9999999986   45778999999999989999999999999999987   7889999


Q ss_pred             HHhcCcEEEEecccccCc---cccccC--cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCC
Q psy8850         162 CRSKGVIFHCDAAQAVGK---IDINIQ--NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~---~~~~~~--~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
                      |++||+++|+|++|+.+.   .+.++.  ..+.|+++.|+||.+|+.|  +|+++++++..+.+.....       +...
T Consensus       181 ~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~-------~~~~  253 (381)
T 1v2d_A          181 ARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQ-------WTSF  253 (381)
T ss_dssp             HHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHH-------HHTS
T ss_pred             HHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHHh-------hccc
Confidence            999999999999998532   222222  3478999999999767556  8999998766555443221       1123


Q ss_pred             CCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-
Q psy8850         235 TLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-  311 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  311 (397)
                      +.+.....++.++++..  .++++++.+++.++++++.+.|++  .++.+..+..   +.++++.++..+   +...+. 
T Consensus       254 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---~~~~~~~~~~~~---~~~~l~~  325 (381)
T 1v2d_A          254 SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVYVPEG---TYFLMAELPGWD---AFRLVEE  325 (381)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEECCSB---SSEEEEECTTCC---HHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH--CCCEecCCCc---ceEEEEecChHh---HHHHHHh
Confidence            45556666666778765  456788999999999999999998  4777765432   345666766442   444443 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                       ||.+.+|..|...               ....+++||+++.  +++++++++++|++++++.++
T Consensus       326 ~gi~v~~g~~~~~~---------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~  373 (381)
T 1v2d_A          326 ARVALIPASAFYLE---------------DPPKDLFRFAFCK--TEEELHLALERLGRVVNSPRE  373 (381)
T ss_dssp             TCEECEEGGGGCSS---------------SCCTTEEEEECCS--CHHHHHHHHHHHHHHC-----
T ss_pred             CCEEEecchHhCCC---------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhccc
Confidence             9999988765430               0124789999986  899999999999999887665

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=1.4e-33  Score=268.11  Aligned_cols=324  Identities=15%  Similarity=0.092  Sum_probs=244.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-----CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-----ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      .++++.+++++.+.+.....   . .|    .......++++.++++++     +++++|++|+|+++|+.+++.++.  
T Consensus        70 ~~~~~~v~~a~~~~~~~~~~---~-~y----~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~--  139 (427)
T 3dyd_A           70 LPTDPEVTQAMKDALDSGKY---N-GY----APSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA--  139 (427)
T ss_dssp             SCCCHHHHHHHHHHHHHCCS---S-SC----CCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHhcCcC---C-CC----CCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc--
Confidence            47889999999998876211   0 11    112346789999999999     677899999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++|++|+++.++|+++...+...   |.+++.++.+  .++.+|++++++++++++++|++++++||||.+.|   ++
T Consensus       140 --~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~  214 (427)
T 3dyd_A          140 --NPGQNILVPRPGFSLYKTLAESM---GIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQ  214 (427)
T ss_dssp             --CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             --CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHH
Confidence              78999999999999998877776   9999999886  35678999999999999999999999999999999   89


Q ss_pred             HHHHHHHhcCcEEEEecccccCc----cccccCcccc---cEEEeccccccCCCC--ceEEEEecCCCC---cccccccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGK----IDINIQNYKV---DLMSFSAHKIYGPKG--IGALYIRRNPRT---RIEAQIHG  224 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~----~~~~~~~~~~---d~~~~s~~K~~g~~g--~g~~~~~~~~~~---~~~~~~~~  224 (397)
                      +|+++|++||+++|+|++|+...    ....+..++.   .+++.|++|.+|..|  +|++++++....   .+...+..
T Consensus       215 ~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~  294 (427)
T 3dyd_A          215 KILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVK  294 (427)
T ss_dssp             HHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHH
Confidence            99999999999999999998422    2222222222   367889999655445  799998854211   11111100


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec----
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN----  299 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----  299 (397)
                          ......+++.....++.++++.. .+++.+..+++.++++++.+.|++ ++++.+..+..   +.++++.++    
T Consensus       295 ----~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~p~~---g~~~~~~l~~~~~  366 (427)
T 3dyd_A          295 ----LSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA-IPGLRPVRPSG---AMYLMVGIEMEHF  366 (427)
T ss_dssp             ----HHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-STTEEEECCSB---TTEEEEEECGGGC
T ss_pred             ----HHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCe---eEEEEEecCHhhc
Confidence                00012355666677776777742 446788889999999999999998 88988765543   345555654    


Q ss_pred             --CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         300 --FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       300 --~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                        ..+..++...|.   ||.+.+|..|..                   .+++||+++  ++++++++++++|.+++++++
T Consensus       367 ~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~  425 (427)
T 3dyd_A          367 PEFENDVEFTERLVAEQSVHCLPATCFEY-------------------PNFIRVVIT--VPEVMMLEACSRIQEFCEQHY  425 (427)
T ss_dssp             TTCSSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEESC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHCCEEEECCcccCC-------------------CCeEEEEEC--CCHHHHHHHHHHHHHHHHHhh
Confidence              134567776662   999999865543                   389999987  689999999999999998765

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=100.00  E-value=1.3e-32  Score=267.42  Aligned_cols=336  Identities=19%  Similarity=0.164  Sum_probs=253.8

Q ss_pred             CCHHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC--CcE--EEeCChhHHHHHHHHHhHhhhc
Q psy8850           9 IDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADP--REI--IWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~i--~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      ..+.+.+++.+.+.... .++.  .+...+...+...++++++++++|.++  +++  ++++|+++|+.++++++.....
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~  185 (514)
T 3mad_A          108 GDEHHIAFLNEVYALQSQSNPL--HPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWAR  185 (514)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCTT--CTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhcCCc--ccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhh
Confidence            44666666666665422 2222  222233445667778999999999874  567  9999999999999998873210


Q ss_pred             ----cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHH
Q psy8850          84 ----KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        84 ----~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                          .++|+|+++.+.|+++...+..+   |.+++.+|.++++.+|+++|++++++++++|++++++||+|.+.|+++|.
T Consensus       186 ~~~g~~~d~Vi~~~~~~~~~~~~~~~~---G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~  262 (514)
T 3mad_A          186 ATKGITAPEAVVPVSAHAAFDKAAQYF---GIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIA  262 (514)
T ss_dssp             HHHCCSSCEEEEETTSCTHHHHHHHHH---TCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHH
T ss_pred             hhcCCCCCeEEEeCccchHHHHHHHHc---CCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHH
Confidence                11289999999999999988888   99999999998999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCcc-----------ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccc----ccc
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKI-----------DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA----QIH  223 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~-----------~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~----~~~  223 (397)
                      ++|++||++||+|++|+.+..           +++....++|++++|+|| ++++.|+|+++++++.......    ...
T Consensus       263 ~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~  342 (514)
T 3mad_A          263 ALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWP  342 (514)
T ss_dssp             HHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCT
T ss_pred             HHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccC
Confidence            999999999999999985432           344455588999999999 5788889999998753322211    111


Q ss_pred             cCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC
Q psy8850         224 GGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE  302 (397)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (397)
                      ++........++.+....+++.++++.+. .+++++.+++.++++++.+.|++ ++++.+..++    ..++.+...+.+
T Consensus       343 ~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~----~~~~~~~~~~~~  417 (514)
T 3mad_A          343 GGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA-IPSLKILGDP----LWVIAVASDELN  417 (514)
T ss_dssp             TCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCEESSCC----SSEEEEECSSSC
T ss_pred             CCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCC----eEEEEEeCCCCC
Confidence            11111112245566666777778887664 46888999999999999999999 8888887654    236666666667


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ..++.+.|.  |+.+ +|..+                     ++.+|++++.. ++++++++++++|+++++++++.
T Consensus       418 ~~~l~~~L~~~Gi~v-~g~~~---------------------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~  472 (514)
T 3mad_A          418 IYQVMEEMAGRGWRL-NGLHR---------------------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH  472 (514)
T ss_dssp             HHHHHHHHHTTTCBC-EEETT---------------------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCEe-ccCCC---------------------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            778888876  6666 33211                     26799999843 56799999999999999988763

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=3e-33  Score=260.65  Aligned_cols=307  Identities=12%  Similarity=0.103  Sum_probs=240.9

Q ss_pred             CCCHHHHHHHHHHHhh--ccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.+++++.+.+..  ...++.           ....++++++++++|+ ++++|++|+|+++|+++++.++.    +
T Consensus        43 ~~~~~v~~a~~~~~~~~~~~~y~~-----------~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~----~  107 (367)
T 3euc_A           43 RLPPALRSELAARLGEVALNRYPV-----------PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAA----R  107 (367)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSCC-----------CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTC----C
T ss_pred             CCCHHHHHHHHHHhhhhhhhcCCC-----------CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHc----C
Confidence            5789999999998874  221111           1357899999999999 77799999999999999999887    7


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCccccccc---HHHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      +||+|++..++|+++...+...   |.+++.+|.++++.+|++++++++++ ++++|++++++||||.++|   +++|++
T Consensus       108 ~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~  184 (367)
T 3euc_A          108 PGAKVMAPVPGFVMYAMSAQFA---GLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVR  184 (367)
T ss_dssp             TTCEEEEEESCSCCSCHHHHTT---TCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CCCEEEEcCCCHHHHHHHHHHc---CCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence            8999999999999998876665   99999999998888999999999998 9999999999999999986   567888


Q ss_pred             HHHhc--CcEEEEecccccCc---cccccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccC
Q psy8850         161 LCRSK--GVIFHCDAAQAVGK---IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS  233 (397)
Q Consensus       161 l~~~~--gi~livD~a~~~~~---~~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (397)
                      +|++|  |+++|+|++|+...   ....+...+.++++.|++|. +..|  +|+++++++....+.....         .
T Consensus       185 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~---------~  254 (367)
T 3euc_A          185 AAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRP---------P  254 (367)
T ss_dssp             HTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCC---------S
T ss_pred             hhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCC---------C
Confidence            89999  99999999988322   11122333567889999996 4434  7888887655544433321         2


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--
Q psy8850         234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--  311 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  311 (397)
                      .+.+.....++.++++. .+++++..+++.++++++.+.|++ ++++.+... .   +.++++.++  +..++.+.|.  
T Consensus       255 ~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~-~---~~~~~~~~~--~~~~l~~~l~~~  326 (367)
T 3euc_A          255 YNVNVLTEATALFALEH-VAVLDEQAAQLRAERSRVAEGMAA-HGGVTVFPS-A---ANFLLARVP--DAAQTFDRLLAR  326 (367)
T ss_dssp             SCCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHT-STTCEECCC-S---SSEEEEECS--CHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECCC-C---CeEEEEECC--CHHHHHHHHHHC
Confidence            24566667777677776 556788899999999999999998 888875433 2   445567766  6777877776  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ||.+.+|..|..                 ...+++||+++   +++++++++++|++++
T Consensus       327 gi~v~~~~~~~~-----------------~~~~~iRis~~---~~~~i~~~~~~l~~~l  365 (367)
T 3euc_A          327 KVLIKNVSKMHP-----------------LLANCLRVTVS---TPEENAQFLEAFAASL  365 (367)
T ss_dssp             TEECEECGGGCG-----------------GGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred             CeEEEECCccCC-----------------CCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence            899998865532                 12489999987   8999999999999875

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=3.2e-33  Score=262.56  Aligned_cols=319  Identities=13%  Similarity=0.110  Sum_probs=238.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCc-EEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPRE-IIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~-i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++++.+.+++.+.+....    . .|...    ....++++.+++++    |  +++++ +++++|+++|+.+++.++. 
T Consensus        39 ~~~~~v~~a~~~~~~~~~----~-~y~~~----~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-  108 (389)
T 1gd9_A           39 DTPQHIKEYAKEALDKGL----T-HYGPN----IGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-  108 (389)
T ss_dssp             CCCHHHHHHHHHHHHTTC----C-SCCCT----TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-
T ss_pred             CCCHHHHHHHHHHHhCCC----C-CCCCC----CCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC-
Confidence            467899999999886521    1 12211    12344555555555    8  46778 9999999999999999886 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l  155 (397)
                         ++|++|+++.++|+++...+...   |.+++.+|.++  ++.+|++++++++++++++|++++++||||.++|   +
T Consensus       109 ---~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l  182 (389)
T 1gd9_A          109 ---KDGEEVLIPTPAFVSYAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDL  182 (389)
T ss_dssp             ---CTTCEEEEEESCCTTHHHHHHHH---TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred             ---CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHH
Confidence               78999999999999998887776   99999999874  4568999999999989999999999999999986   7


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc----ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI----DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      ++|+++|++||+++|+|++|+.+..    +.++..    .+.|+++.|+||.+|++|  +|+++++++..+.+.....++
T Consensus       183 ~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~  262 (389)
T 1gd9_A          183 EEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYN  262 (389)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECHHHHHHHHHHHhhh
Confidence            8999999999999999999985543    122222    357899999999777556  699999866555544332211


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CC
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FI  301 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  301 (397)
                             ..+.+.....++.++++....  +++++.+++.++++++.+.|++ + ++.+..+..   +.++++.++  +.
T Consensus       263 -------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~~  330 (389)
T 1gd9_A          263 -------ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE-M-GLPTVKPKG---AFYIFPRIRDTGL  330 (389)
T ss_dssp             -------TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCB---TTEECCBCGGGTC
T ss_pred             -------ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---eeEEEEeccCCCC
Confidence                   124455555666667765444  6788899999999999999998 5 665554322   334455665  34


Q ss_pred             ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +..++.+.|.   ||.+.+|..|.+                 ...+++||+++.  +++++++++++|.+++++.
T Consensus       331 ~~~~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~  386 (389)
T 1gd9_A          331 TSKKFSELMLKEARVAVVPGSAFGK-----------------AGEGYVRISYAT--AYEKLEEAMDRMERVLKER  386 (389)
T ss_dssp             CHHHHHHHHHHHTCEECEEGGGGCG-----------------GGTTBEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence            6677777763   899998865542                 123789999985  8999999999999988653

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=2.4e-33  Score=259.96  Aligned_cols=307  Identities=15%  Similarity=0.105  Sum_probs=240.0

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++|+.+++++.+.+....      .|.     .....++++.++++++++++++++++|+++|+.+++.++.    ++||
T Consensus        29 ~~~~~v~~a~~~~~~~~~------~y~-----~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~gd   93 (354)
T 3ly1_A           29 GMSPKAQAAARDAVVKAN------RYA-----KNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA----SLEA   93 (354)
T ss_dssp             CCCHHHHHHHHHTGGGTT------SCC-----HHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC----CTTC
T ss_pred             CCCHHHHHHHHHHHhhCc------CCC-----CCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh----CCCC
Confidence            578999999998886522      221     2357899999999999988899999999999999999887    7899


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc--CCceEEEEecccCcccccccHHHHHHHHHh-
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEIGELCRS-  164 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~-  164 (397)
                      +|+++.++|+++...+...   |.+++.+|.++++.+|+++++++++  +++++|++++++||||.++|.+++.++++. 
T Consensus        94 ~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~  170 (354)
T 3ly1_A           94 QLVIPELTYGDGEHFAKIA---GMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASK  170 (354)
T ss_dssp             EEEEESSSCTHHHHHHHHT---TCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTC
T ss_pred             eEEECCCCchHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC
Confidence            9999999999998877766   9999999999788899999999998  789999999999999999998888888777 


Q ss_pred             -cCcEEEEecccccCcccc---c----cCcc-cccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccC
Q psy8850         165 -KGVIFHCDAAQAVGKIDI---N----IQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS  233 (397)
Q Consensus       165 -~gi~livD~a~~~~~~~~---~----~~~~-~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (397)
                       ||+++|+|++|+.....-   .    .... +.++++.|+||.+|..|  +|+++++++..+.+.....         .
T Consensus       171 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------~  241 (354)
T 3ly1_A          171 PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVA---------G  241 (354)
T ss_dssp             CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTT---------C
T ss_pred             CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcC---------C
Confidence             999999999998433211   1    1122 56699999999666434  7998887655444443321         1


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--
Q psy8850         234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--  311 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  311 (397)
                      .+.+.....++.++++.. +++++..+++.++++++.+.|++ + ++.+..+ .   +.++++.++. +..++...|.  
T Consensus       242 ~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~~~-~---~~~~~~~~~~-~~~~~~~~l~~~  313 (354)
T 3ly1_A          242 EKINFSGVDAALASMNDS-AFITYSKKSNDVSRQILLKALED-L-KLPYLPS-E---GNFVFHQLVV-PLKDYQTHMADA  313 (354)
T ss_dssp             SCCCHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC-C---SSEEEEECSS-CHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHH-C-CCeECCC-C---ceEEEEECCC-CHHHHHHHHHHC
Confidence            356666666666777643 56788899999999999999998 4 5554432 1   4556777765 6777877776  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ||.+. |.++.                   ..+++||+++   +++++++++++|++++++
T Consensus       314 gi~v~-g~~~~-------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          314 GVLIG-RAFPP-------------------ADNWCRISLG---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             TEECC-CCCTT-------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             CEEEe-ecCCC-------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence            88887 65332                   1389999986   799999999999988753

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=267.36  Aligned_cols=338  Identities=16%  Similarity=0.125  Sum_probs=257.8

Q ss_pred             CCCHHHHHHHHHHHhhccC-CCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChhHHHHHHHHHhHhhh-c
Q psy8850           8 PIDPRVVDKMIPYLRVQFG-NPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFY-K   83 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~i~~~~g~t~a~~~~l~~l~~~~-~   83 (397)
                      ..++.+.+++.+.+..... ++.  .+.......+...++++++++++|++  ++++++++|+++|+.+++.++.... .
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~  152 (497)
T 3mc6_A           75 HGGDDLIHLQTIAYEKYCVANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALH  152 (497)
T ss_dssp             CCCHHHHHHHHHHHHHTSSCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHh
Confidence            3457888888888876332 222  22223345577788999999999987  6789999999999999999886321 1


Q ss_pred             cCC---CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHH
Q psy8850          84 KRG---KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        84 ~~g---~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                      ++|   ++|+++.+.|+++..++..+   |.+++.+|.++ ++.+|+++|++++++++++|++++++||+|.+.|+++|.
T Consensus       153 ~~g~~~~~Vi~~~~~h~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~  229 (497)
T 3mc6_A          153 HRGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLG  229 (497)
T ss_dssp             HSCCSSCEEEEETTSCHHHHHHHHHS---CCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTT
T ss_pred             cCCCCCceEEEeCCccHHHHHHHHHc---CCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHH
Confidence            134   89999999999999888877   99999999987 788999999999999999999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCcc------------ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc----cccc
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKI------------DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI----EAQI  222 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~------------~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~----~~~~  222 (397)
                      ++|++||+++|+|++|+.+..            +++....++|+++.|+|| ++++.|+|+++++++.....    .+..
T Consensus       230 ~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~  309 (497)
T 3mc6_A          230 KIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAW  309 (497)
T ss_dssp             THHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTC
T ss_pred             HHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccc
Confidence            999999999999999984322            345555689999999999 57888899999886533222    1111


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI  301 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (397)
                      .++........++.+...++++.++++.+. .++.++.++..++++++++.|++.++++.+..++.   ..++.+..++.
T Consensus       310 ~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~---~~~v~~~~~~~  386 (497)
T 3mc6_A          310 TGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPR---YSVISFSSKTL  386 (497)
T ss_dssp             TTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCC---SSEEEEECTTT
T ss_pred             cCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC---eeEEEEeCCCC
Confidence            111111112234445555777778887664 46888999999999999999998347888876533   45666666666


Q ss_pred             ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      +..++.+.|.  |+.+..+.  .                    ...+|++++ .++.+++++++++|+++++++++.
T Consensus       387 ~~~~l~~~L~~~Gi~v~~~~--~--------------------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~  440 (497)
T 3mc6_A          387 NIHELSDRLSKKGWHFNALQ--K--------------------PVALHMAFT-RLSAHVVDEICDILRTTVQELKSE  440 (497)
T ss_dssp             THHHHHHHHHTTTCBCEECC--S--------------------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHhCCEEEecCC--C--------------------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            7788888876  77665331  1                    256899998 579999999999999999887653

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=4e-33  Score=261.99  Aligned_cols=320  Identities=12%  Similarity=0.137  Sum_probs=244.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++|+.+++++.+.+....       +.++....+...++++.++++++  ++++++++++|+++|+.+++.++.    ++
T Consensus        45 ~~~~~v~~a~~~~~~~~~-------~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~----~~  113 (391)
T 4dq6_A           45 KAAPCIIDSLKNRLEQEI-------YGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT----KA  113 (391)
T ss_dssp             CCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----CT
T ss_pred             CCCHHHHHHHHHHHhCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC----CC
Confidence            568999999999886511       11112235678889999999999  677889999999999999999887    78


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CC--CCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI  158 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i  158 (397)
                      |++|+++.++|+++...+...   |.+++.+|.+  .+  +.+|++++++++++ +++|++++++||||.++|   +++|
T Consensus       114 gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i  189 (391)
T 4dq6_A          114 NDKIMIQEPVYSPFNSVVKNN---NRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKL  189 (391)
T ss_dssp             TCEEEECSSCCTHHHHHHHHT---TCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHHHHc---CCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHH
Confidence            999999999999998887766   9999999987  33  35899999999998 999999999999999965   6788


Q ss_pred             HHHHHhcCcEEEEecccccCc----cccccCcc-----cccEEEeccccccCCCC--ceEEEEec-CCCCccccccccCC
Q psy8850         159 GELCRSKGVIFHCDAAQAVGK----IDINIQNY-----KVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGG  226 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~----~~~~~~~~-----~~d~~~~s~~K~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~  226 (397)
                      +++|++||+++|+|++|+...    ...++..+     +.++++.|+||.+|+.|  +|++++++ +..+.+......  
T Consensus       190 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--  267 (391)
T 4dq6_A          190 GDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTR--  267 (391)
T ss_dssp             HHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHH--
T ss_pred             HHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHh--
Confidence            999999999999999998532    22223322     33488999999555333  78888875 444444332211  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGE  304 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  304 (397)
                          ...++++...+.++.++++...+.++++.++++++++++.+.|++.++++.+..+..   ..++++.++  +.+..
T Consensus       268 ----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  340 (391)
T 4dq6_A          268 ----IDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEG---TYLLWVDFSALGLSDE  340 (391)
T ss_dssp             ----TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSB---SSEEEEECGGGCCCHH
T ss_pred             ----hcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCc---cEEEEEEhhhcCCCHH
Confidence                123356666777776777765556788899999999999999987567888776543   344557776  35777


Q ss_pred             HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ++.+.|.   ||.+.+|..|..                 ...+++||+++  ++++++++++++|++++
T Consensus       341 ~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRis~~--~~~~~i~~~l~~l~~~l  390 (391)
T 4dq6_A          341 ELESILVQKGKVALNQGNSFGI-----------------GGSGYQRINLA--CPRSMLEEALIRIKNAI  390 (391)
T ss_dssp             HHHHHHHHTTCEECEEGGGGCT-----------------TCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEeeCchhhCC-----------------CCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence            8887774   899999876654                 12489999998  58999999999999875

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=4.3e-33  Score=261.30  Aligned_cols=315  Identities=14%  Similarity=0.091  Sum_probs=231.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++|+.+.+++.+.+....    . .|...    ....++++.+++++    |  +++++|++|+|+++|+.+++.++.  
T Consensus        44 ~~~~~v~~a~~~~~~~~~----~-~y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~--  112 (385)
T 1b5p_A           44 DTPEHVKEAARRALAQGK----T-KYAPP----AGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL--  112 (385)
T ss_dssp             CCCHHHHHHHHHHHHTTC----C-SCCCT----TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHhcCC----C-CCCCC----CCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc--
Confidence            457889999988875411    1 12211    12345555665555    5  356789999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|+++.|+|+++...+...   |.+++.+|.++  ++.+|++++++++++++++|++++++||||.++|   ++
T Consensus       113 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~  187 (385)
T 1b5p_A          113 --DPGDEVIVLSPYWVSYPEMVRFA---GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLE  187 (385)
T ss_dssp             --CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             --CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHH
Confidence              79999999999999998877766   99999999974  4578999999999989999999999999999988   78


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---ccccCcc--cccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQNY--KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY  229 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~~~--~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~  229 (397)
                      +|+++|++||++||+|++|+....   ..++..+  +.++++.|+||.+|++|  +|+++++++....+......     
T Consensus       188 ~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~-----  262 (385)
T 1b5p_A          188 ALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQ-----  262 (385)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhh-----
Confidence            899999999999999999984332   1222222  56889999999777656  89999886554444332211     


Q ss_pred             cccCCCCchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGE  304 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  304 (397)
                       . ..+.+.....+..++++.   ..+++++..+++.++++++.+.|++ + ++.+..+..   +..+++.++  +.+..
T Consensus       263 -~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~~~~~  335 (385)
T 1b5p_A          263 -S-TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA-L-GLKAVRPSG---AFYVLMDTSPIAPDEV  335 (385)
T ss_dssp             -T-TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCSB---TTEEEEECTTTCSSHH
T ss_pred             -c-cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe---eEEEEEecCCCCCCHH
Confidence             1 113344444445566653   3456788889999999999999998 5 666554432   334455554  34667


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ++.+.|.  ||.+.+|..|..                   .+++||+++  ++++++++++++|.++++
T Consensus       336 ~l~~~l~~~gv~v~~g~~f~~-------------------~~~iRis~~--~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          336 RAAERLLEAGVAVVPGTDFAA-------------------FGHVRLSYA--TSEENLRKALERFARVLG  383 (385)
T ss_dssp             HHHHHHHHTTEECEESGGGTC-------------------TTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred             HHHHHHHHCCeEEecccccCC-------------------CCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            7877775  999999865532                   278999998  689999999998887653

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=2.9e-32  Score=259.01  Aligned_cols=323  Identities=14%  Similarity=0.148  Sum_probs=247.0

Q ss_pred             CCCHHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      .+++.+++++.+.+..+. +++.   +...+...+...++++.+++++|.+  +.++++||++|+..++.++.    ++|
T Consensus        78 ~~~~~v~~a~~~~~~~~~~~~~~---~~~~~G~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~al~~l~----~~g  148 (427)
T 2w8t_A           78 TFDPDVIAAGKEALEKFGSGTCG---SRMLNGTFHDHMEVEQALRDFYGTT--GAIVFSTGYMANLGIISTLA----GKG  148 (427)
T ss_dssp             GGCHHHHHHHHHHHHHHCSCCCS---CTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CTT
T ss_pred             CCCHHHHHHHHHHHHHhCCCCcc---cccccCCcHHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHHHHHhc----CCC
Confidence            367999999999987632 2222   1122222357789999999999986  67777888889999888876    789


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELC  162 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~  162 (397)
                      |+|+++.++|+++...+...   |.+++.++.     +|+++|++++++    ++++|++++++||+|.+.|+++|+++|
T Consensus       149 d~vl~~~~~h~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~  220 (427)
T 2w8t_A          149 EYVILDADSHASIYDGCQQG---NAEIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVA  220 (427)
T ss_dssp             CEEEEETTCCHHHHHHHHHS---CSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHH
T ss_pred             CEEEECCcccHHHHHHHHHc---CCeeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHH
Confidence            99999999999999887766   889888874     589999999976    789999999999999999999999999


Q ss_pred             HhcCcEEEEecccccCccc---------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccC
Q psy8850         163 RSKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS  233 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (397)
                      ++||+++|+|++|+.+...         +++. .++|+++.|++|.+|+.| |+++++++..+.+......    . ...
T Consensus       221 ~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~g-G~v~~~~~l~~~l~~~~~~----~-~~~  293 (427)
T 2w8t_A          221 KKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVG-GFVVSNHPKFEAVRLACRP----Y-IFT  293 (427)
T ss_dssp             HHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCC-EEEEECCTTGGGGGGTCHH----H-HSS
T ss_pred             HHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCC-CEEEeCHHHHHHHHHhccc----c-ccc
Confidence            9999999999999976543         2332 257999999999777776 9999988776665443111    0 112


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC-
Q psy8850         234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK-  311 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-  311 (397)
                      ++.+...++++.++++.+. .++++.+++.++++++.+.|++ + ++.+..+.  ..+.++++.+++ .+..++...|. 
T Consensus       294 ~~~~~~~~aa~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~  368 (427)
T 2w8t_A          294 ASLPPSVVATATTSIRKLM-TAHEKRERLWSNARALHGGLKA-M-GFRLGTET--CDSAIVAVMLEDQEQAAMMWQALLD  368 (427)
T ss_dssp             CCCCHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHH-H-TCEESCSS--CCSSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH-c-CCcccCCC--CCCCEEEEEECCHHHHHHHHHHHHH
Confidence            4566677777777888754 3577889999999999999998 5 77666332  124577777764 23556777765 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                       ||.+.++..+..                +.+.+++||+++..++++++++++++|+++++++.+
T Consensus       369 ~Gi~v~~~~~~~~----------------~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~  417 (427)
T 2w8t_A          369 GGLYVNMARPPAT----------------PAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV  417 (427)
T ss_dssp             TTEECEEECTTTS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCeEEeeeCCCCC----------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence             899888754332                112378999999989999999999999999877654

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=8.6e-33  Score=259.52  Aligned_cols=322  Identities=13%  Similarity=0.072  Sum_probs=235.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++|+.+.+++.+.+....    . .|.......+....+.+.+.+.+|+  ++++|++|+|+++|+.+++.++.    ++
T Consensus        43 ~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~----~~  113 (388)
T 1j32_A           43 NTPKHIVEAAKAALEQGK----T-RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI----EP  113 (388)
T ss_dssp             CCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----CT
T ss_pred             CCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc----CC
Confidence            357899999998885411    1 2222112234444455555555564  56789999999999999999886    78


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      ||+|+++.++|+++...+...   |.+++.+|.+.  ++.+|+++|++++++++++|++++++||||.++|   +++|++
T Consensus       114 gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~  190 (388)
T 1j32_A          114 GDEVIIPAPFWVSYPEMVKLA---EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQ  190 (388)
T ss_dssp             TCEEEEESSCCTHHHHHHHHT---TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CCEEEEcCCCChhHHHHHHHc---CCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence            999999999999998877665   99999999874  5678999999999999999999999999999976   789999


Q ss_pred             HHHhcCcEEEEecccccCcc----ccccCc-----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccc
Q psy8850         161 LCRSKGVIFHCDAAQAVGKI----DINIQN-----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY  229 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~----~~~~~~-----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~  229 (397)
                      +|++||+++|+|++|+.+..    ..++..     .+.|+++.|+||.+|+.|  +|+++++++..+.+......     
T Consensus       191 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~-----  265 (388)
T 1j32_A          191 VAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGH-----  265 (388)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHT-----
T ss_pred             HHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHHHHHHHHHhh-----
Confidence            99999999999999985332    111111     357899999999777666  89999887655444433221     


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLL  307 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  307 (397)
                       ...+ .+.....+..++++...+++++..+++.++++++.+.|++ ++++.+..+..   +.++++.++  +.+..++.
T Consensus       266 -~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~  339 (388)
T 1j32_A          266 -STSN-VCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLECPKPDG---AFYMFPSIAKTGRSSLDFC  339 (388)
T ss_dssp             -TTCS-CCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBCCCCCB---TTEECCBCGGGTCCHHHHH
T ss_pred             -cccC-CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh-CCCCcccCCCe---eEEEEEecCCCCCCHHHHH
Confidence             1122 2333344444556533445778889999999999999998 77876654432   233344454  34667787


Q ss_pred             HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.|.   ||.+.+|..|..                   .+++|++++  ++++++++++++|+++++++
T Consensus       340 ~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~i~~~~~~l~~~l~~~  387 (388)
T 1j32_A          340 SELLDQHQVATVPGAAFGA-------------------DDCIRLSYA--TDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             HHHHHHHCEECEEGGGGTC-------------------TTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCEEEeChhhhCC-------------------CCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence            7763   899998865432                   278999997  58999999999999988764

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=4.1e-33  Score=262.59  Aligned_cols=321  Identities=14%  Similarity=0.107  Sum_probs=243.4

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +++.+.+++.+.+.... +... .+.......+...++++.+++++|.+  ++++++|+++|+.+++.++.    ++||+
T Consensus        58 ~~~~v~~a~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~v~~~~ggt~a~~~~~~~~~----~~gd~  129 (398)
T 3a2b_A           58 TDTRIIKAAQDALEKYG-TGCA-GSRFLNGTLDIHVELEEKLSAYVGKE--AAILFSTGFQSNLGPLSCLM----GRNDY  129 (398)
T ss_dssp             GCHHHHHHHHHHHHHHC-SCCC-SBTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHSS----CTTCE
T ss_pred             CCHHHHHHHHHHHHHcC-CCCC-CcCcccCCcHHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCE
Confidence            78999999999886532 1111 12222223467888999999999974  89999999999999999987    79999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      |+++.++|+++...+...   |.+++.+|.     +|++++++++++    ++++|++++++||||.+.|+++|.++|++
T Consensus       130 V~~~~p~~~~~~~~~~~~---g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~  201 (398)
T 3a2b_A          130 ILLDERDHASIIDGSRLS---FSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANE  201 (398)
T ss_dssp             EEEETTCCHHHHHHHHHS---SSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred             EEECCccCHHHHHHHHHc---CCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHH
Confidence            999999999998887766   999999986     489999999987    78999999999999999999999999999


Q ss_pred             cCcEEEEecccccCcc---ccccCc-c----cccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         165 KGVIFHCDAAQAVGKI---DINIQN-Y----KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       165 ~gi~livD~a~~~~~~---~~~~~~-~----~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      ||+++|+|++|+.+..   ...+.. +    ++|+++.|+||.+|+.| |+++++++..+.+......     ....+++
T Consensus       202 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~~-----~~~~~~~  275 (398)
T 3a2b_A          202 FDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG-GFVAGDADVIDFLKHNARS-----VMFSASM  275 (398)
T ss_dssp             HTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EEEEECHHHHHHHHHHCHH-----HHSSBCC
T ss_pred             cCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC-cEEEeCHHHHHHHHHhccc-----ceecCCC
Confidence            9999999999985532   111111 1    26999999999878877 9999987655544332110     0122345


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC--Cc
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK--DI  313 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~i  313 (397)
                      +..+.++..++++.. +.++++.+++.++++++.+.|++ + ++.+..+.    +.++++.++. .+..++.+.|.  ||
T Consensus       276 ~~~~~a~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----g~~~~~~~~~~~~~~~l~~~l~~~gi  348 (398)
T 3a2b_A          276 TPASVASTLKALEII-QNEPEHIEKLWKNTDYAKAQLLD-H-GFDLGATE----SPILPIFIRSNEKTFWVTKMLQDDGV  348 (398)
T ss_dssp             CHHHHHHHHHHHHHH-HHCTHHHHHHHHHHHHHHHHHHH-T-TCCBCSCC----SSEEEEECCCHHHHHHHHHHHHHTTE
T ss_pred             CHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHh-c-CCCcCCCC----CCEEEEEcCCHHHHHHHHHHHHHCCc
Confidence            555555555777764 34667889999999999999998 5 66554332    4566777753 24566777765  89


Q ss_pred             EecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      .+.+|..|..                +...+++||+++..++++++++++++|++++++++
T Consensus       349 ~v~~~~~~~~----------------~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~  393 (398)
T 3a2b_A          349 FVNPVVSPAV----------------PAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE  393 (398)
T ss_dssp             ECEEECTTTS----------------CGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             EEEeeCCCCC----------------CCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence            9998865542                01247899999988899999999999999987653

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=100.00  E-value=6.3e-33  Score=262.88  Aligned_cols=325  Identities=13%  Similarity=0.089  Sum_probs=241.2

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------------CCCCcEEEeCChhHHHHH
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------------ADPREIIWTSGATESNNL   73 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------~~~~~i~~~~g~t~a~~~   73 (397)
                      ..++++.+++++.+.+....   .. .|.    ......++++.++++++            +++++|++++|+++|+.+
T Consensus        48 ~~~~~~~v~~a~~~~~~~~~---~~-~y~----~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~  119 (416)
T 1bw0_A           48 NLLTSAAQIKKLKEAIDSQE---CN-GYF----PTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILM  119 (416)
T ss_dssp             CSCCCHHHHHHHHHHHHTTC---SS-SCC----CTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhCCc---cC-CcC----CCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHH
Confidence            35678999999999886521   01 121    11235677888888887            667899999999999999


Q ss_pred             HHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850          74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        74 ~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~  151 (397)
                      ++.++.    ++|++|+++.++|+++...+...   |.+++.+|.++  ++.+|+++|+++++++++++++++++||||.
T Consensus       120 ~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~  192 (416)
T 1bw0_A          120 AITAIC----DAGDYALVPQPGFPHYETVCKAY---GIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGS  192 (416)
T ss_dssp             HHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred             HHHHhC----CCCCEEEEcCCCcHhHHHHHHHc---CcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCc
Confidence            999886    78999999999999998776665   99999998864  3568999999999989999999999999999


Q ss_pred             ccc---HHHHHHHHHhcCcEEEEecccccCc--------cccccCcc---cccEEEeccccccCCCC--ceEEEEecC--
Q psy8850         152 IQP---ILEIGELCRSKGVIFHCDAAQAVGK--------IDINIQNY---KVDLMSFSAHKIYGPKG--IGALYIRRN--  213 (397)
Q Consensus       152 ~~~---l~~i~~l~~~~gi~livD~a~~~~~--------~~~~~~~~---~~d~~~~s~~K~~g~~g--~g~~~~~~~--  213 (397)
                      ++|   +++|+++|++||++||+|++|+...        ...++..+   +.++++.|++|.++.+|  +|+++++++  
T Consensus       193 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~  272 (416)
T 1bw0_A          193 NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG  272 (416)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTC
T ss_pred             ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchh
Confidence            999   8899999999999999999998522        11122222   23578899999655445  799998874  


Q ss_pred             CCCccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCc
Q psy8850         214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH  292 (397)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  292 (397)
                      ....+......    ......+.+.....++.++++.. .+++++..++++++++++.+.|++ ++++.+..+..   +.
T Consensus       273 ~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~  344 (416)
T 1bw0_A          273 NGPSFLEGLKR----VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-CIGLAPTMPRG---AM  344 (416)
T ss_dssp             SCHHHHHHHHH----HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCB---TT
T ss_pred             hHHHHHHHHHH----HhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCe---eE
Confidence            44333211100    00112345666667776777642 446788889999999999999998 77887664432   34


Q ss_pred             eEEEEecC------CChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHH
Q psy8850         293 NLNISFNF------IEGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI  363 (397)
Q Consensus       293 ~~~~~~~~------~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~  363 (397)
                      ++++.++.      .+..++...| .  ||.+.+|..|..                   .+++||+++  ++++++++++
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-------------------~~~iRis~~--~~~e~l~~~l  403 (416)
T 1bw0_A          345 YLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-------------------PGFTRLTTT--RPVEVYREAV  403 (416)
T ss_dssp             EEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEECC--SCHHHHHHHH
T ss_pred             EEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC-------------------CCeEEEEec--CCHHHHHHHH
Confidence            55666642      3566777765 2  999998865532                   378999996  5899999999


Q ss_pred             HHHHHHHHHHH
Q psy8850         364 KLLKMKVKKLR  374 (397)
Q Consensus       364 ~~l~~~~~~~~  374 (397)
                      ++|.+++++.+
T Consensus       404 ~~l~~~l~~~~  414 (416)
T 1bw0_A          404 ERIKAFCQRHA  414 (416)
T ss_dssp             HHHHHHHHHHB
T ss_pred             HHHHHHHHHhh
Confidence            99999987654

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=1.6e-33  Score=262.78  Aligned_cols=308  Identities=16%  Similarity=0.135  Sum_probs=232.5

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      +|+.+.+++.+.+....    . .|..    .....++++.++++++      ++++++++++|+++|+.+++.++.   
T Consensus        43 ~~~~v~~a~~~~~~~~~----~-~y~~----~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~---  110 (370)
T 2z61_A           43 TPKPIVDEGIKSLKEGK----T-HYTD----SRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII---  110 (370)
T ss_dssp             CCHHHHHHHHHHHHTTC----C-SCCC----TTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHcCc----c-CCCC----CCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc---
Confidence            57899999998886411    1 1211    1123456666666654      566789999999999999999886   


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHH
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC  162 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~  162 (397)
                       ++||+|++++++|+++...+...   |.+++.+|      +|+++|++++++++++|++++++||||.++|.+ |.++|
T Consensus       111 -~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~  179 (370)
T 2z61_A          111 -DDGDEVLIQNPCYPCYKNFIRFL---GAKPVFCD------FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFA  179 (370)
T ss_dssp             -CTTCEEEEESSCCTHHHHHHHHT---TCEEEEEC------SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHH
T ss_pred             -CCCCEEEEeCCCchhHHHHHHHc---CCEEEEeC------CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHHH
Confidence             78999999999999998887666   99999888      689999999998999999999999999999999 99999


Q ss_pred             HhcCcEEEEecccccCcc---ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccC
Q psy8850         163 RSKGVIFHCDAAQAVGKI---DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS  233 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (397)
                      ++||+++|+|++|+.+..   +.++..    .+.|+++.|+||.+|++|  +|+++++++..+.+......       ..
T Consensus       180 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~-------~~  252 (370)
T 2z61_A          180 YENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQN-------LF  252 (370)
T ss_dssp             HHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHH-------HT
T ss_pred             HHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhh-------cc
Confidence            999999999999985432   222222    367899999999777556  79999887655554433221       12


Q ss_pred             CCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-
Q psy8850         234 GTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-  311 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  311 (397)
                      ++.+.....++.++++. ..+++++..+++.++++++.+.|++ + ++.+..+..   +.++++.++. +..++.+.|. 
T Consensus       253 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~-~~~~~~~~l~~  326 (370)
T 2z61_A          253 ISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKD-F-GWEVNNPIG---AYYVFPNIGE-DGREFAYKLLK  326 (370)
T ss_dssp             SSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCCCCCB---TTEECCBCSS-CHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCc---ceEEEEecCC-CHHHHHHHHHH
Confidence            24555666666677765 4556788899999999999999998 5 665544322   3344556654 6677777763 


Q ss_pred             --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                        ||.+.+|..|..                 ...+++||+++  ++++++++++++|+++++
T Consensus       327 ~~gi~v~~g~~f~~-----------------~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          327 EKFVALTPGIGFGS-----------------KGKNYIRISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             HHCEECEEGGGGCG-----------------GGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             hCCEEEeCchhhCC-----------------CCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence              899998865532                 12378999999  589999999999998764

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.3e-33  Score=264.39  Aligned_cols=339  Identities=14%  Similarity=0.101  Sum_probs=238.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCC-cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPR-EIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~-~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++++.+.+++.+.+...    .. .|.......+..+.+.+.+.+.+|.  +++ +|++|+|+++|+.+++.++.    +
T Consensus        38 ~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~----~  108 (411)
T 2o0r_A           38 DGPPKMLQAAQDAIAGG----VN-QYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV----E  108 (411)
T ss_dssp             CCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC----C
T ss_pred             CCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc----C
Confidence            46789999999988651    11 2222212233444445555555574  566 89999999999999999886    7


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC---CCCCCHHHHHHHhcCCceEEEEecccCcccccccH---HHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEI  158 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~---~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---~~i  158 (397)
                      +||+|+++.++|+++...+...   |.+++.+|.+.   ++.+|+++|++++++++++|++++++||||.++|.   ++|
T Consensus       109 ~gd~Vl~~~~~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i  185 (411)
T 2o0r_A          109 PGSEVLLIEPFYDSYSPVVAMA---GAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAI  185 (411)
T ss_dssp             TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred             CCCEEEEeCCCcHhHHHHHHHc---CCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHH
Confidence            8999999999999998777665   99999999864   35689999999999999999999999999999884   889


Q ss_pred             HHHHHhcCcEEEEecccccCcc----ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcc
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKI----DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE  228 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~  228 (397)
                      +++|++||+++|+|++|+.+..    +.++..    .+.|+++.|+||.+|+.|  +|+++++++..+.+......    
T Consensus       186 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~----  261 (411)
T 2o0r_A          186 AEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQY----  261 (411)
T ss_dssp             HHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHHHHH----
T ss_pred             HHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHHHHHHHHHHHhh----
Confidence            9999999999999999985432    112221    367999999999777556  89999886555444332211    


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CChHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGES  305 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  305 (397)
                         ...+.+.....++.++++...++++++.+++.++++++.+.|++ + ++.+..+..   +.++++.++.   .+..+
T Consensus       262 ---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~  333 (411)
T 2o0r_A          262 ---LSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTE-I-GFAVHDSYG---TYFLCADPRPLGYDDSTE  333 (411)
T ss_dssp             ---HTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-H-TCEECCCCB---SSEEEEECGGGTCCCHHH
T ss_pred             ---ccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCCe---eEEEEEecCCCCCCCHHH
Confidence               11223444555566777655556788899999999999999998 5 777665432   4466777764   45667


Q ss_pred             HHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Q psy8850         306 LLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSP  378 (397)
Q Consensus       306 ~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~  378 (397)
                      +...|.   ||.+.+|..|......++..+.      ....+++||+++.  +++++++++++|++++++.+...|
T Consensus       334 ~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~------~~~~~~iRis~~~--~~e~i~~~~~~l~~~~~~~~~~~~  401 (411)
T 2o0r_A          334 FCAALPEKVGVAAIPMSAFCDPAAGQASQQA------DVWNHLVRFTFCK--RDDTLDEAIRRLSVLAERPATGVP  401 (411)
T ss_dssp             HHHHHHHHHSEECEEGGGGSCCC--------------CCGGGCEEEECCS--CHHHHHHHHHHHGGGGC-------
T ss_pred             HHHHHHHhCCEEEcChhhhCCCccccccccc------cCCCCeEEEEecC--CHHHHHHHHHHHHHHHhccCcCCC
Confidence            777652   9999998776431111111110      0124789999974  899999999999988766655443

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=2.5e-33  Score=267.65  Aligned_cols=326  Identities=15%  Similarity=0.103  Sum_probs=240.2

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC-CCCcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA-DPREIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~-~~~~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      +++.+.+++.+.+....      .....|.......++++.+++++    |. ++++|++|+|+++|+.+++.++.    
T Consensus        92 p~~~v~~a~~~~l~~~~------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~----  161 (448)
T 3aow_A           92 PKEIIRDILVEIMEKYA------DKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFL----  161 (448)
T ss_dssp             CHHHHHHHHHHHHHHSH------HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHhhh------HHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHc----
Confidence            56789999888876411      00011111123456667777666    88 67789999999999999999987    


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----C--CceEE-EEecccCccccccc--
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----S--DTILV-SVMLVNNEIGVIQP--  154 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~--~~~~v-~~~~~~~~tG~~~~--  154 (397)
                      ++||+|++..++|+++...+...   |.+++.+|.++++ +|+++|+++++    +  ++++| ++++++||||.++|  
T Consensus       162 ~~Gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~  237 (448)
T 3aow_A          162 NPGDIVVVEAPTYLAALQAFNFY---EPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNED  237 (448)
T ss_dssp             CTTCEEEEEESCCHHHHHHHHTT---CCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHc---CCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHH
Confidence            78999999999999998877665   9999999988765 89999999997    6  78987 57899999999998  


Q ss_pred             -HHHHHHHHHhcCcEEEEecccccCcc----ccccC---cccccEEEeccccccCCCC--ceEEEEecCCCCcccccccc
Q psy8850         155 -ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQ---NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG  224 (397)
Q Consensus       155 -l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~---~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~  224 (397)
                       +++|+++|++||++||+|++|+.+..    ..++.   ..+.++++.|++|.++ +|  +|+++++++..+.+......
T Consensus       238 ~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~~~~~  316 (448)
T 3aow_A          238 RRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQS  316 (448)
T ss_dssp             HHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCHHHHHHHHHHHHH
Confidence             46899999999999999999985432    11222   2246789999999666 45  79999987665555432211


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcC-cEEEeCCCCCCCCceEEEEecC-
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFNF-  300 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-  300 (397)
                            ... +.+.....++.++++..  .++++++.++++++++++.+.|++.++ ++.+..+..   +.++++.++. 
T Consensus       317 ------~~~-~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~---g~~~~v~~~~~  386 (448)
T 3aow_A          317 ------TDL-CTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEG---GMFIWVTLPDG  386 (448)
T ss_dssp             ------HHS-SCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSB---SSEEEEECSTT
T ss_pred             ------hcC-CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCc---cEEEEEEcCCC
Confidence                  112 23445555555666642  446788889999999999999987456 577654433   4566777763 


Q ss_pred             CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      .+..++...|.  ||.+.+|..|.+.               ....+++||+++. .++++|++++++|.+++++..+
T Consensus       387 ~~~~~l~~~l~~~gV~v~pg~~f~~~---------------~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~~  447 (448)
T 3aow_A          387 IDSKKMLERAIKKGVAYVPGEAFYAH---------------RDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEELK  447 (448)
T ss_dssp             CCHHHHHHHHHHTTEECEEGGGGSTT---------------CCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHCCcEEEcchhhcCC---------------CCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence            46677877775  9999999766541               0124789999986 4899999999999999877643

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=1.7e-33  Score=265.98  Aligned_cols=327  Identities=14%  Similarity=0.106  Sum_probs=243.9

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--P-REIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~-~~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      .++++.+++++.+.+......    .|.......+...++++.+++++|.+  + +++++++|+++|+..++.++.    
T Consensus        52 ~~~~~~v~~a~~~~~~~~~~~----~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~----  123 (407)
T 3nra_A           52 HEPTPGAFDLFSAGVQSGGVQ----AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV----  123 (407)
T ss_dssp             SCCCTTHHHHHHHHHHHTHHH----HSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC----
T ss_pred             CCCcHHHHHHHHHHHhcCCCC----CcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC----
Confidence            367899999999988642100    11112233567788899999999974  3 689999999999999999887    


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc------CCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP------KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---  154 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~------~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---  154 (397)
                      ++||+|+++.++|+++...+...   |.+++.+|.      +.++.+|++++++++++++++|++++++||||.++|   
T Consensus       124 ~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~  200 (407)
T 3nra_A          124 ARGDKVAIVQPDYFANRKLVEFF---EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEE  200 (407)
T ss_dssp             CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHH
T ss_pred             CCCCEEEEcCCcccchHHHHHHc---CCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHH
Confidence            78999999999999998887776   999999998      366789999999999999999999999999999999   


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCcc----cccc-----CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKI----DINI-----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH  223 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~----~~~~-----~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~  223 (397)
                      +++|+++|++||+++|+|++|+.+..    ...+     ...+.++++.|++|.+|+.|  +|+++++++....+.....
T Consensus       201 l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~  280 (407)
T 3nra_A          201 IGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQA  280 (407)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHh
Confidence            88999999999999999999985321    1111     12356799999999666334  7998887665554443321


Q ss_pred             cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--C
Q psy8850         224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--I  301 (397)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  301 (397)
                      .      +.. +.+.....++.++++...+.+++..+++.++++++.+.|++ ++++.+..+..   +.++++.++.  .
T Consensus       281 ~------~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~~~~~~~~~~~~~  349 (407)
T 3nra_A          281 I------VSL-RAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRG-CEGVFARTPQA---GSYLFPRLPKLAV  349 (407)
T ss_dssp             H------HTS-SSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHT-STTCBCCCCSB---SSEECCBCCCBSS
T ss_pred             h------hcc-CCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-CCCceeccCCe---eEEEEEeCCCCCC
Confidence            1      111 23333444443444322234677788899999999999998 77876654432   3444555553  4


Q ss_pred             ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +..++...|.   ||.+.+|..|.+                 ...+++||+++.  ++++|++++++|++++++++
T Consensus       350 ~~~~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRis~~~--~~~~i~~~~~~l~~~~~~~~  406 (407)
T 3nra_A          350 APAEFVKILRLQAGVVVTPGTEFSP-----------------HTADSVRLNFSQ--DHEAAVAAARRIVTLVERYR  406 (407)
T ss_dssp             CHHHHHHHHHHHHCEECEEGGGTCT-----------------TCTTBEEEECCS--CHHHHHHHHHHHHHHHHHHB
T ss_pred             CHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHHHhh
Confidence            6778887773   999999877654                 124899999985  89999999999999998764

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4e-33  Score=263.91  Aligned_cols=325  Identities=14%  Similarity=0.120  Sum_probs=237.9

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CC-CcEEEeCChhHHHHHHHHHhHhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DP-REIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~--~~-~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +++.+.+++.+.+....   .. .|.    ......++++.+++++    |.  ++ ++|++|+|+++|+.+++.++.  
T Consensus        51 ~~~~v~~a~~~~~~~~~---~~-~y~----~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~--  120 (412)
T 2x5d_A           51 TPPHIVEKLCTVAQRED---TH-GYS----TSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--  120 (412)
T ss_dssp             CCHHHHHHHHHTC-----------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHhCCC---CC-CCC----CCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC--
Confidence            57899999888775420   00 111    1123456667777766    85  55 689999999999999999886  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-C-CCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-G-LITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~-~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|+++.++|+++...+...   |.+++.+|.+++ + .+|++++++++++++++|++++++||||.++|   ++
T Consensus       121 --~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~  195 (412)
T 2x5d_A          121 --DHGDTILVPNPSYPIHIYGAVIA---GAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFE  195 (412)
T ss_dssp             --CTTCEEEEEESCCHHHHHHHHHH---TCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHH
T ss_pred             --CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHH
Confidence              78999999999999999888776   999999998764 3 37899999999989999999999999999988   57


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc----ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI----DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      +|+++|++||+++|+|++|+.+..    ..++..    .+.++++.|+||.+|+.|  +|+++++++....+.....   
T Consensus       196 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~---  272 (412)
T 2x5d_A          196 RVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKS---  272 (412)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHH---
T ss_pred             HHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHHHh---
Confidence            899999999999999999985432    122222    367899999999666445  7999998765554443221   


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CC---C
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FI---E  302 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~  302 (397)
                          ....+.+.....++.++++...++++++.+++.++++++.+.|++ + ++.+..+..   +.++++.++ +.   +
T Consensus       273 ----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~  343 (412)
T 2x5d_A          273 ----YHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLRE-A-GWMVENPKA---SMYVWAKIPEPYAHLG  343 (412)
T ss_dssp             ----HHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCCCCCSB---SSEEEEECCTTTGGGC
T ss_pred             ----hhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEecCCCe---eeEEEEEcCCccCCCC
Confidence                112344555566665677644456788899999999999999998 5 655543322   345667775 33   5


Q ss_pred             hHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8850         303 GESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPL  379 (397)
Q Consensus       303 ~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~  379 (397)
                      ..++...| .  ||.+.+|..|..                 ...+++||+++.  +++++++++++|.++++++..++++
T Consensus       344 ~~~~~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~~~~~  404 (412)
T 2x5d_A          344 SLEFAKKLLQDAKVSVSPGIGFGD-----------------YGDDHVRFALIE--NRDRLRQAVRGIKAMFRADGLLSPQ  404 (412)
T ss_dssp             HHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHHCCEEEeCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCCcChH
Confidence            67787776 2  999999876542                 124789999996  7999999999999999988877765

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=8.8e-33  Score=262.24  Aligned_cols=321  Identities=15%  Similarity=0.165  Sum_probs=245.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++++.+++++.+.+....       +.++....+...++++.+++.++  +++++|++++|+++|++++++++.    ++
T Consensus        74 ~~~~~v~~a~~~~~~~~~-------~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~----~~  142 (421)
T 3l8a_A           74 LPVPEIKEAIINYGREHI-------FGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS----EK  142 (421)
T ss_dssp             CCCHHHHHHHHHHHHHCC-------SSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----CT
T ss_pred             CCCHHHHHHHHHHHhcCC-------cCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc----CC
Confidence            568999999999887511       11111225677888899999988  567789999999999999999887    78


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CC--CCCCHHHHHHHhc-CCceEEEEecccCccccccc---HHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN--GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILEI  158 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~--~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~---l~~i  158 (397)
                      |++|++..+.|+++...+...   |.+++.+|.+ .+  +.+|+++|+++++ +++++|++++++||+|.+.|   +++|
T Consensus       143 gd~Vi~~~~~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l  219 (421)
T 3l8a_A          143 GDAVLINSPVYYPFARTIRLN---DHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKI  219 (421)
T ss_dssp             EEEEEEEESCCHHHHHHHHHT---TEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred             CCEEEECCCCcHHHHHHHHHC---CCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHH
Confidence            999999999999998887776   9999999986 33  3689999999998 78999999999999998854   7889


Q ss_pred             HHHHHhcCcEEEEecccccCcc----ccccCc-----ccccEEEeccccccCCC--CceEEEEe-cCCCCccccccccCC
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKI----DINIQN-----YKVDLMSFSAHKIYGPK--GIGALYIR-RNPRTRIEAQIHGGG  226 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~----~~~~~~-----~~~d~~~~s~~K~~g~~--g~g~~~~~-~~~~~~~~~~~~~~~  226 (397)
                      +++|++||+++|+|++|+....    ...+..     .+.++++.|++|.+|+.  ++|+++++ ++....+......  
T Consensus       220 ~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~--  297 (421)
T 3l8a_A          220 AELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLA--  297 (421)
T ss_dssp             HHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHH--
T ss_pred             HHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHh--
Confidence            9999999999999999974221    111111     25568899999955533  36998887 4444444332211  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE  304 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  304 (397)
                          ...++.+...+.++.++++...++++++.+++.++++++.+.|++ ++++.+..+..   ..++++.++.  .+..
T Consensus       298 ----~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~i~~~~~~~---~~~~~v~~~~~~~~~~  369 (421)
T 3l8a_A          298 ----NNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEA-KTKIKVMEPEG---TYLVWLDFSAYAIAQP  369 (421)
T ss_dssp             ----TTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HCSCEEECCSB---SSEEEEECGGGTCCTT
T ss_pred             ----cccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-CCCceEeCCCe---eEEEEEeccccCCCHH
Confidence                223456777777777888765566888999999999999999998 58888876544   3444577764  4667


Q ss_pred             HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ++...|.   ||.+.+|..|..                 .+.+++||+++  +++++|++++++|+++++
T Consensus       370 ~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          370 QLSEKLQNEAKVVLNDGAHFGK-----------------EGKYFARLNVA--TPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             HHHHHHHHTTCEECEEGGGGCG-----------------GGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCEEEECchhhCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            7877773   899998876543                 12489999998  489999999999998764

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=100.00  E-value=1.1e-31  Score=259.90  Aligned_cols=344  Identities=16%  Similarity=0.156  Sum_probs=242.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+..+++.++.+.+++......    +....+..+........++++++++++|+++ +.+++|+|||+|+.+++.++.
T Consensus       104 l~~~~~~~~~~~v~~~~~~~~~n----~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar  179 (497)
T 2qma_A          104 IAHLHTPPLMPAVAAEAMIAALN----QSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLAR  179 (497)
T ss_dssp             CSSSCCCCBHHHHHHHHHHHHHC----CCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHH
T ss_pred             eEeCCCCCcHHHHHHHHHHHhhc----ccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHH
Confidence            57788888889998888666542    2111233344556677778999999999975 689999999999999998753


Q ss_pred             hhhc---------cC------CC-EEEEcCCCChhhHHHHHHHhhCCc-EEEEeccCCCCCCCHHHHHHHhcCC------
Q psy8850          80 HFYK---------KR------GK-HIITVQTEHKSVLDSIRKLENDGF-RVTYLKPKNNGLITLSQLEEKICSD------  136 (397)
Q Consensus        80 ~~~~---------~~------g~-~vl~~~~~~~s~~~~~~~~~~~g~-~v~~v~~~~~~~~d~~~l~~~i~~~------  136 (397)
                      ..+.         .+      ++ +|+++..+|+++..++..++. |. +++.+|.++++.+|+++|+++++++      
T Consensus       180 ~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~  258 (497)
T 2qma_A          180 DWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL-GEKAVMTVDANADGTMDITKLDEVIAQAKAEGLI  258 (497)
T ss_dssp             HHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTS-CGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCE
T ss_pred             HHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCC-CcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCc
Confidence            2111         11      35 899999999999988887732 33 7999999988999999999999763      


Q ss_pred             ceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccc----cCcc-cccEEEecccc-ccCCCCceEEEE
Q psy8850         137 TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN----IQNY-KVDLMSFSAHK-IYGPKGIGALYI  210 (397)
Q Consensus       137 ~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~----~~~~-~~d~~~~s~~K-~~g~~g~g~~~~  210 (397)
                      +.+|++++++|++|.+.|+++|+++|++||+++|+|++|+.+..+.+    +..+ ++|++++|+|| +++|.++|++++
T Consensus       259 ~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~  338 (497)
T 2qma_A          259 PFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLV  338 (497)
T ss_dssp             EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEE
T ss_pred             ceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceEEEEE
Confidence            34889999999999999999999999999999999999997766444    2233 68999999999 777888999999


Q ss_pred             ecCC-CCcccc---ccccCCcc-cc---cc-CCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcE
Q psy8850         211 RRNP-RTRIEA---QIHGGGHE-YG---LR-SGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEI  280 (397)
Q Consensus       211 ~~~~-~~~~~~---~~~~~~~~-~~---~~-~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  280 (397)
                      +++. ...+..   ++...... ..   +. .++.. ...+++.++++.+ .+++.++.++..++++++.+.|++ ++++
T Consensus       339 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~-~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~  416 (497)
T 2qma_A          339 NDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKR-FDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRT-NDQF  416 (497)
T ss_dssp             SCGGGGGGGCC--------------------CCSCC-CTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT-CTTE
T ss_pred             eCHHHHHHhcCCchhcCCccccCCCccccCCCCCCc-hhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh-CCCe
Confidence            8654 222211   00000000 00   00 00111 1123444566644 457888999999999999999998 8899


Q ss_pred             EEeCCCCCCCCceEEEEecCCC--h----HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-C
Q psy8850         281 YINGDMNNRIPHNLNISFNFIE--G----ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-G  351 (397)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~  351 (397)
                      .++.++.   ..++.|.+....  .    .++...+.  |+.+.++..                   ..+..++|+++ +
T Consensus       417 ~~~~~~~---~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~-------------------~~g~~~lRis~~~  474 (497)
T 2qma_A          417 ELLAEPS---LSTVLFRATHETADLDELNKALRLEALTRGIAVLGETI-------------------VDGKTALKFTILN  474 (497)
T ss_dssp             EECSCCS---SSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEE-------------------ETTEEEEEEECCC
T ss_pred             EEEcCCC---ceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeE-------------------ECCEEEEEEEecC
Confidence            8876543   456677765321  1    23333443  544432210                   01236899998 7


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q psy8850         352 RFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       352 ~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..+++++|+++++.|+++++++
T Consensus       475 ~~~t~edi~~~~~~l~~~~~~~  496 (497)
T 2qma_A          475 PCLTTSDFESLLSKINMLAVEL  496 (497)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Confidence            7899999999999999987653

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=1.8e-33  Score=265.80  Aligned_cols=319  Identities=13%  Similarity=0.125  Sum_probs=234.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++.+.+....    . .|...    ....++++.+++++    |  +++++|++|+|+++|+.+++.++.  
T Consensus        54 ~~~~~v~~a~~~~~~~~~----~-~y~~~----~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--  122 (406)
T 1xi9_A           54 QPPEHMKEAYCKAIKEGH----N-YYGDS----EGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--  122 (406)
T ss_dssp             CCCHHHHHHHHHHHHTTC----C-SCCCT----TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHhcCC----C-CCCCC----CCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC--
Confidence            467899999998886421    0 12211    12344555555555    3  566789999999999999999886  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|+++.++|+++...+...   |.+++.+|.++  ++.+|+++|++++++++++|++++++||||.++|   ++
T Consensus       123 --~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~  197 (406)
T 1xi9_A          123 --DPGDEILVPGPSYPPYTGLVKFY---GGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLE  197 (406)
T ss_dssp             --CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             --CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHH
Confidence              78999999999999998877665   99999999874  4568999999999999999999999999999987   88


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---ccccCc--ccc-cEEEeccccccCCCC--ceEEE--Eec----CCCCcccccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQN--YKV-DLMSFSAHKIYGPKG--IGALY--IRR----NPRTRIEAQI  222 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~~--~~~-d~~~~s~~K~~g~~g--~g~~~--~~~----~~~~~~~~~~  222 (397)
                      +|+++|++||+++|+|++|+.+..   ...+..  .+. |+++.|+||.+|+.|  +|+++  .++    +..+.+....
T Consensus       198 ~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~  277 (406)
T 1xi9_A          198 EILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLA  277 (406)
T ss_dssp             HHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHH
Confidence            999999999999999999985432   112221  255 889999999776556  79998  665    3333332221


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec---
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN---  299 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---  299 (397)
                      .       .. .+.+.....++.++++...++++++.+++.++++++.+.|++ ++++.+..+..   +.++++.++   
T Consensus       278 ~-------~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~~~~~~~~~~~~  345 (406)
T 1xi9_A          278 R-------IR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPGISTTKPQG---AFYIFPKIEVGP  345 (406)
T ss_dssp             H-------HT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STTEECCCCCB---SSEECCEECSCS
T ss_pred             H-------hh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-CCCCeeecCCe---eEEEEEecCccC
Confidence            1       11 244555566666777533345778889999999999999998 77887654432   333444555   


Q ss_pred             CCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         300 FIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       300 ~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.+..++.+.|.   ||.+.+|..|..                 ...+++||+++  ++++++++++++|+++++++
T Consensus       346 ~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~  403 (406)
T 1xi9_A          346 WKNDKEFVLDVLHNAHVLFVHGSGFGE-----------------YGAGHFRAVFL--PPIEILEEAMDRFEKFMKER  403 (406)
T ss_dssp             CSSHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhCCEEEeCchhcCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence            346677777653   899998865532                 12378999998  78999999999999998765

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=100.00  E-value=2.8e-32  Score=257.01  Aligned_cols=326  Identities=13%  Similarity=0.102  Sum_probs=237.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++++.+.+++.+.+....    . .|...  ..+..+.+.+.+.+.+|  +++++|++|+|+++|+.+++.++.    ++
T Consensus        44 ~~~~~v~~a~~~~~~~~~----~-~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~----~~  112 (399)
T 1c7n_A           44 KNPPELIEGLKKYLDETV----L-GYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT----KP  112 (399)
T ss_dssp             CCCHHHHHHHHHHHHHCC----C-SSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----CT
T ss_pred             CCCHHHHHHHHHHHhcCC----C-CCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc----CC
Confidence            468899999999886411    1 22221  23334444444444457  567789999999999999999887    78


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCC--CCCHHHHHHHhc-CCceEEEEecccCccccccc---HHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNG--LITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILEI  158 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~--~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~---l~~i  158 (397)
                      ||+|++..++|+++...+...   |.+++.+|.+ +++  .+|+++|+++++ +++++|++++++||||.++|   +++|
T Consensus       113 gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i  189 (399)
T 1c7n_A          113 GDGVIIITPVYYPFFMAIKNQ---ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKI  189 (399)
T ss_dssp             TCEEEECSSCCTHHHHHHHTT---TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred             CCEEEEcCCCcHhHHHHHHHc---CCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHH
Confidence            999999999999998777655   9999999885 333  589999999998 68999999999999999999   8899


Q ss_pred             HHHHHhcCcEEEEecccccCcc----ccccCc-----ccccEEEeccccccCCCC--ceEEEEec-CCCCccccccccCC
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKI----DINIQN-----YKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGG  226 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~----~~~~~~-----~~~d~~~~s~~K~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~  226 (397)
                      +++|++||+++|+|++|+....    ..++..     .+.++++.|++|.+|+.|  +|++++++ +....+......  
T Consensus       190 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~--  267 (399)
T 1c7n_A          190 KDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA--  267 (399)
T ss_dssp             HHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH--
T ss_pred             HHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhh--
Confidence            9999999999999999985321    222322     245688999999666445  69999874 344444332221  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE  304 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  304 (397)
                          +..++++.....++.++++...+++++..+++.++++++.+.|++.++++.+..+..   +.++++.++.  .+..
T Consensus       268 ----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  340 (399)
T 1c7n_A          268 ----TSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEG---TYLQWIDFRALKMDHK  340 (399)
T ss_dssp             ----TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSB---SSEEEEECGGGCCCHH
T ss_pred             ----cccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCc---eEEEEEEcccCCCCHH
Confidence                112345666666666777654456788889999999999999987456765554322   3344577764  4677


Q ss_pred             HHHHHh--C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         305 SLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       305 ~~~~~l--~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ++.+.|  + ||.+.+|..|.+                 ...+++||+++.  +++++++++++|.++++++++
T Consensus       341 ~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~  395 (399)
T 1c7n_A          341 AMEEFMIHKAQIFFDEGYIFGD-----------------GGIGFERINLAA--PSSVIQESLERLNKALKDLKN  395 (399)
T ss_dssp             HHHHHHHHTTCCCCEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhCCEEEeCccccCC-----------------CCCCeEEEEecc--CHHHHHHHHHHHHHHHHHHHh
Confidence            787777  3 899998866542                 124789999986  489999999999999988754

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=100.00  E-value=1.1e-33  Score=266.39  Aligned_cols=327  Identities=13%  Similarity=0.125  Sum_probs=240.4

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +++.+.+++.+.+.....      ...+|.......++++.+++++|+++++|++++|+++|+.+++.++.    ++|++
T Consensus        48 ~~~~v~~a~~~~~~~~~~------~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~----~~gd~  117 (397)
T 2zyj_A           48 PKEEAAEAAARILREKGE------VALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL----DEGSP  117 (397)
T ss_dssp             CHHHHHHHHHHHHHHHHH------HHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTCE
T ss_pred             CHHHHHHHHHHHHHhcch------hhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC----CCCCE
Confidence            568899999888764110      00011112245788999999999888899999999999999999886    78999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEE-EEecccCcccccccH---HHHHHHHH
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILV-SVMLVNNEIGVIQPI---LEIGELCR  163 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v-~~~~~~~~tG~~~~l---~~i~~l~~  163 (397)
                      |++..++|+++...+...   |.+++.+|.++++ +|+++|++++++ ++++| ++++++||||.++|.   ++|+++|+
T Consensus       118 Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~  193 (397)
T 2zyj_A          118 VLLEAPSYMGAIQAFRLQ---GPRFLTVPAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVM  193 (397)
T ss_dssp             EEEEESCCHHHHHHHHTT---CCEEEEEEEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHH
T ss_pred             EEEeCCCcHHHHHHHHHc---CCEEEecCcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHH
Confidence            999999999988776655   9999999987665 899999999986 78887 578999999999985   48999999


Q ss_pred             hcCcEEEEecccccCcc----ccccCccc------ccEEEeccccccCC-CCceEEEEecCCCCccccccccCCcccccc
Q psy8850         164 SKGVIFHCDAAQAVGKI----DINIQNYK------VDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGGHEYGLR  232 (397)
Q Consensus       164 ~~gi~livD~a~~~~~~----~~~~~~~~------~d~~~~s~~K~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (397)
                      +||+++|+|++|+.+..    +.++..++      .++++.|+||.+|+ .++|+++++++..+.+......      +.
T Consensus       194 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~------~~  267 (397)
T 2zyj_A          194 ERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQG------AD  267 (397)
T ss_dssp             HHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHH------HH
T ss_pred             HcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHHHHHHHh------hc
Confidence            99999999999985332    22233332      33889999996663 2379999886655444432211      11


Q ss_pred             CCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcC-cEEEeCCCCCCCCceEEEEec-CCChHHHHHH
Q psy8850         233 SGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFN-FIEGESLLMA  309 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  309 (397)
                      .++ +.....++.++++... +++++..+++.++++++.+.|++.++ ++.+..+..   +.++++.++ +.+..++.+.
T Consensus       268 ~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~  343 (397)
T 2zyj_A          268 LHT-PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG---GMFVWMELPKGLSAEGLFRR  343 (397)
T ss_dssp             SSC-CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSB---SSEEEEECSTTCCHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCc---cEEEEEEcCCCCCHHHHHHH
Confidence            233 4444555556665322 45778888999999999999987456 577654432   456677776 3466778777


Q ss_pred             hC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         310 IK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       310 l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      |.  ||.+.+|..|.+.               ....+++||+++.. +++++++++++|.++++++.+
T Consensus       344 l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~  395 (397)
T 2zyj_A          344 ALEENVAFVPGGPFFAN---------------GGGENTLRLSYATL-DREGIAEGVRRLGRALKGLLA  395 (397)
T ss_dssp             HHHTTEEEEESGGGCTT---------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCEEechHHhcCC---------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence            76  9999998766431               01247899999974 899999999999999987653

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=100.00  E-value=3.4e-32  Score=255.29  Aligned_cols=320  Identities=14%  Similarity=0.071  Sum_probs=235.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCC-cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPR-EIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~-~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++++.+.+++.+.+...    .. .|.......+..+.+.+.+.+.+|  ++++ +|++|+|+++|+.+++.++.    +
T Consensus        43 ~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~----~  113 (386)
T 1u08_A           43 DGPRYLQERLAHHVAQG----AN-QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV----R  113 (386)
T ss_dssp             CCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC----C
T ss_pred             CCCHHHHHHHHHHHHhh----cc-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC----C
Confidence            46789999999988641    11 222211223344444444444457  4577 89999999999999999886    7


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      +|++|+++.++|+++...+...   |.+++.+|.+. ++.+|+++|++++++++++|++++++||||.++|   +++|++
T Consensus       114 ~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~  190 (386)
T 1u08_A          114 NGDEVICFDPSYDSYAPAIALS---GGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQ  190 (386)
T ss_dssp             TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CCCEEEEeCCCchhHHHHHHHc---CCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHH
Confidence            8999999999999998877666   99999999875 5679999999999989999999999999999987   588999


Q ss_pred             HHHhcCcEEEEecccccCcc----ccccC----cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccc
Q psy8850         161 LCRSKGVIFHCDAAQAVGKI----DINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~----~~~~~----~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +|++||+++|+|++|+....    ...+.    ..+.|+++.|+||.+|+.|  +|+++++++..+.+......      
T Consensus       191 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~------  264 (386)
T 1u08_A          191 AIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQY------  264 (386)
T ss_dssp             HHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHH------
T ss_pred             HHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHHh------
Confidence            99999999999999985221    11221    2367999999999777556  79999887655544432211      


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CChHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLL  307 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  307 (397)
                       ...+.+.....++.++++...++++++.+++.++++++.+.|++ + ++.+..+..   +.++++.++.   .+..++.
T Consensus       265 -~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~  338 (386)
T 1u08_A          265 -LTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE-S-RLEILPCEG---TYFLLVDYSAVSTLDDVEFC  338 (386)
T ss_dssp             -HTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS-S-SCEECCCCB---SSEEEEECTTTCCSCHHHHH
T ss_pred             -hccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCc---eEEEEEecCCCCCCCHHHHH
Confidence             11234445555666677654456788899999999999999998 5 777664432   4566777765   3567777


Q ss_pred             HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      +.|.   ||.+.+|..|...               ....+++||+++.  ++++|++++++|++
T Consensus       339 ~~l~~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~--~~~~i~~~~~~l~~  385 (386)
T 1u08_A          339 QWLTQEHGVAAIPLSVFCAD---------------PFPHKLIRLCFAK--KESTLLAAAERLRQ  385 (386)
T ss_dssp             HHHHHHSCEECEEGGGGCSS---------------CCCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred             HHHHHhCCEEEeCchHhCCC---------------CCCCCEEEEEEcC--CHHHHHHHHHHHhh
Confidence            7552   9999988655431               0124789999984  89999999998864

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=8.8e-33  Score=263.59  Aligned_cols=322  Identities=14%  Similarity=0.107  Sum_probs=240.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+++++.+.+.....   . .|..    .....++++.++++++      +++++|++|+|+++|+.+++.++.. 
T Consensus        57 ~~~~~v~~a~~~~~~~~~~---~-~y~~----~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~-  127 (437)
T 3g0t_A           57 PAPQIGIETEIQKLREGVA---S-IYPN----LDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANR-  127 (437)
T ss_dssp             CCCHHHHHHHHHHHHHTGG---G-SCCC----TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTT-
T ss_pred             CCCHHHHHHHHHHHhCCcC---c-CCCC----CCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhc-
Confidence            5689999999998874110   0 1111    1123556666666665      5677899999999999999998751 


Q ss_pred             hccCCC--EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHh-cCCceEEEEecccCccccccc---
Q psy8850          82 YKKRGK--HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQP---  154 (397)
Q Consensus        82 ~~~~g~--~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~~~~---  154 (397)
                       .++||  +|+++.++|+++...+...   |.+++.+|.++ ++.+|+++|++++ ++++++|++++++||||.++|   
T Consensus       128 -~~~gd~~~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~  203 (437)
T 3g0t_A          128 -THKNREYGTLFIDPGFNLNKLQCRIL---GQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEE  203 (437)
T ss_dssp             -SCTTCSCCEEEEESCCHHHHHHHHHH---TCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHH
T ss_pred             -CCCCCccEEEEeCCCcHhHHHHHHHc---CCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHH
Confidence             13788  9999999999999888877   99999999864 4468999999999 778999999999999999998   


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCcc----c--------cccCc-ccccEEEeccccccCCCC--ceEEEEecCCCC-c-
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKI----D--------INIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRT-R-  217 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~----~--------~~~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~-~-  217 (397)
                      +++|+++|++||+++|+|++|+....    +        .++.. .+.++++.|+||.+|+.|  +|+++++++... . 
T Consensus       204 l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~  283 (437)
T 3g0t_A          204 LRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREY  283 (437)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBC
T ss_pred             HHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhh
Confidence            66789999999999999999984221    1        12222 467799999999766444  799999876544 4 


Q ss_pred             ----------------cccccccCCccccccCCCCchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcC
Q psy8850         218 ----------------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE---MKEELKRILFLQKRLYNGLMESIE  278 (397)
Q Consensus       218 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~  278 (397)
                                      +....       .....+.+.....++.++++....+   ++++.+++.++++++.+.|++ + 
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-  354 (437)
T 3g0t_A          284 PDLEESFGRLRFGEALSSSAL-------YALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLD-N-  354 (437)
T ss_dssp             GGGHHHHSCSBHHHHHHTTHH-------HHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT-T-
T ss_pred             hcccccccccchhHHHHHHHH-------hhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH-c-
Confidence                            22111       1123355666666666777765433   788999999999999999999 5 


Q ss_pred             cEEEe------CC-CCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850         279 EIYIN------GD-MNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT  349 (397)
Q Consensus       279 ~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (397)
                      ++.+.      .+ ..   +.++++.+++.+..++.+.|.  ||.+.++..|..                 ..++++||+
T Consensus       355 g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~-----------------~~~~~iRis  414 (437)
T 3g0t_A          355 GFNIVYDKDGNEPLAD---GFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGS-----------------KRNEAMRIC  414 (437)
T ss_dssp             TEEESSCEETTEECCS---SSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTC-----------------CCTTCEEEE
T ss_pred             CCEEeccccCCCCCce---eEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCC-----------------CCCCEEEEE
Confidence            77776      22 22   456677777667888888886  899998866543                 112779999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         350 IGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ++. .+++++++++++|++++++
T Consensus       415 ~~~-~~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          415 TSL-LPESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             CSS-SCGGGHHHHHHHHHHHHHH
T ss_pred             Eec-CCHHHHHHHHHHHHHHHhc
Confidence            995 5899999999999988753

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=100.00  E-value=2e-32  Score=257.91  Aligned_cols=325  Identities=14%  Similarity=0.117  Sum_probs=231.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCC-CCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPA-SRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++++.+.+++.+.+....  +. ...|.......+..+.+.+.+.+.+|  +++++|++|+|+++|+.+++.++.    +
T Consensus        48 ~~~~~v~~a~~~~~~~~~--~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~----~  121 (398)
T 3ele_A           48 PAPQIVNDTIKELVTDYD--SVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT----S  121 (398)
T ss_dssp             CCCHHHHHHHHHHHHHSC--HHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----C
T ss_pred             CCCHHHHHHHHHHHhcCC--ccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc----C
Confidence            568999999999886510  00 00111111223344555555555556  567789999999999999999987    7


Q ss_pred             CC-CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHH
Q psy8850          85 RG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG  159 (397)
Q Consensus        85 ~g-~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~  159 (397)
                      +| |+|++..++|+++...+...   |.+++.+|.++ ++.+|++++++++++++++|++++++||||.++|   +++|+
T Consensus       122 ~g~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~  198 (398)
T 3ele_A          122 DAYDEFITIAPYFPEYKVFVNAA---GARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLS  198 (398)
T ss_dssp             STTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHH
Confidence            89 99999999999998887766   99999999975 5589999999999999999999999999999999   56777


Q ss_pred             HHHHh------cCcEEEEecccccCc-----cccccCcccccEEEeccccccCCCC--ceEEEEecCCCCc--ccccccc
Q psy8850         160 ELCRS------KGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR--IEAQIHG  224 (397)
Q Consensus       160 ~l~~~------~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~--~~~~~~~  224 (397)
                      ++|++      ||+++|+|++|+...     .+......+.++++.|+||.+|.+|  +|+++++++....  +......
T Consensus       199 ~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~  278 (398)
T 3ele_A          199 DLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCG  278 (398)
T ss_dssp             HHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHH
T ss_pred             HHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHH
Confidence            89999      999999999998422     2222233367799999999665334  8999998775542  1111100


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChH
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE  304 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (397)
                      ..  ........+.....++..+++.     ....+++.++++++.+.|++ + ++.+..+..   +..+++.++..+..
T Consensus       279 ~~--~~~~~~~~~~~~~~a~~~~l~~-----~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~~~  346 (398)
T 3ele_A          279 AG--RALGYVCAPSLFQKMIVKCQGA-----TGDINAYKENRDLLYEGLTR-I-GYHCFKPDG---AFYMFVKALEDDSN  346 (398)
T ss_dssp             HH--HHTTCCCSCHHHHHHHTTCTTC-----CCCHHHHHHHHHHHHHHHHH-H-TCCEECCSB---SSEEEEECSSSCHH
T ss_pred             Hh--hhccccCCCHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---eEEEEEEcCCCCHH
Confidence            00  0000112333333333333331     11456778889999999988 4 666665433   44467777766777


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      ++.+.|.  ||.+.+|..|..                   .+++||+++  ++++++++++++|.+++++++
T Consensus       347 ~~~~~l~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~  397 (398)
T 3ele_A          347 AFCEKAKEEDVLIVAADGFGC-------------------PGWVRISYC--VDREMIKHSMPAFEKIYKKYN  397 (398)
T ss_dssp             HHHHHHHTTTEECEESGGGTC-------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCEEEeCccccCC-------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence            8887775  899999876643                   379999997  589999999999999998765

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=1.5e-32  Score=258.09  Aligned_cols=322  Identities=15%  Similarity=0.124  Sum_probs=231.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++|+.+++++.+.+....         .+|.......++++.+++++    |  +++++|++|+|+++|+++++.++.  
T Consensus        44 ~~~~~v~~a~~~~~~~~~---------~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--  112 (391)
T 3h14_A           44 GAPRGAVEALAKSLETDA---------LGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF--  112 (391)
T ss_dssp             CSCHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHhcCC---------CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhc--
Confidence            457889999998886411         11222223455666666665    4  567789999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|++..++|+++...+...   |.+++.+|.+.+  +.+|+++++++   ++++|++++++||||.++|   ++
T Consensus       113 --~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l~  184 (391)
T 3h14_A          113 --DSGDRVGIGAPGYPSYRQILRAL---GLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAMG  184 (391)
T ss_dssp             --CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHHHH
T ss_pred             --CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHHHH
Confidence              78999999999999998877766   999999999854  46799999877   7899999999999999998   78


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---ccccCc-ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +|+++|++||+++|+|++|+....   +..... .+.++++.|++|.+|+.|  +|+++++++....+......      
T Consensus       185 ~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~------  258 (391)
T 3h14_A          185 ALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQN------  258 (391)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHHH------
T ss_pred             HHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHHhh------
Confidence            899999999999999999984321   222222 256788999999665444  78988887655554433211      


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLLM  308 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  308 (397)
                       ...+++.....++.++++ ..+++++..+++.++++++.+.|++ ++...+..+..   +.++++.++  ..+..++..
T Consensus       259 -~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  332 (391)
T 3h14_A          259 -MFICAPHASQVAALAALD-CDAELQANLDVYKANRKLMLERLPK-AGFTRIAPPDG---AFYVYADVSDLTDDSRAFAA  332 (391)
T ss_dssp             -TTCCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCBCCCCB---TTEEEEECTTTCSCHHHHHH
T ss_pred             -hccCCCHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHH-cCCCcccCCCe---eEEEEEecCccCCCHHHHHH
Confidence             123455555555556666 3456788899999999999999998 54322222222   345566665  346777877


Q ss_pred             HhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Q psy8850         309 AIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSP  378 (397)
Q Consensus       309 ~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~  378 (397)
                      .|.   ||.+.+|..|...                ...+++||+++.  +++++++++++|++++++....++
T Consensus       333 ~l~~~~gi~v~~g~~~~~~----------------~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~~~~~  387 (391)
T 3h14_A          333 EILEKAGVAVTPGLDFDPE----------------RGAGTLRFSYAR--ATADIEEGLDRLEAFMQARGEGHH  387 (391)
T ss_dssp             HHHHHHCEECEEGGGTCTT----------------TGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHCCEEEcCchhhCCC----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhccccc
Confidence            753   9999999776540                124899999997  789999999999999887665544

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=1.2e-32  Score=257.47  Aligned_cols=335  Identities=13%  Similarity=0.111  Sum_probs=246.9

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +++++.+++.+    .++++.. .| .+....+...++++.++++++++ +.+++++|||+|+++++.. .    ++||+
T Consensus         9 ~~~~~~~~~~~----~~~~~~~-~h-~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~-~----~~gd~   76 (379)
T 3ke3_A            9 IDPNGLLEYSV----VYTDRAL-NH-MSKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQ-L----TIDED   76 (379)
T ss_dssp             CSTTSCCCCCS----SCCTTSC-CT-TSHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHH-H----CTTCE
T ss_pred             CCHHHHHHHHH----hccCCCC-CC-CCHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHh-C----CCCCe
Confidence            34444444432    2445543 33 35667789999999999999998 6799999999999998764 3    58999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCC--cEEEEeccCCC---------CCCCHHHHHHHhc-CCceEEEEecccCccccccc--
Q psy8850          89 IITVQTEHKSVLDSIRKLENDG--FRVTYLKPKNN---------GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP--  154 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g--~~v~~v~~~~~---------~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~--  154 (397)
                      |++.+++|++.... ..+...|  .+++.++.+..         +.+|++++++++. +++++|++++++|++|.+.|  
T Consensus        77 vi~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~  155 (379)
T 3ke3_A           77 CLIIRNGWFSYRWT-QILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEE  155 (379)
T ss_dssp             EEEEECSHHHHHHH-HHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHH
T ss_pred             EEEEeCCchhHHHH-HHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHH
Confidence            99999988876422 2222224  57888876431         2589999999995 48999999999999999999  


Q ss_pred             -HHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccc-cCCc----
Q psy8850         155 -ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIH-GGGH----  227 (397)
Q Consensus       155 -l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~-~~~~----  227 (397)
                       +++|.++|++||+++|+|++++ |..++++..+++|++++|+|| +.||.|+|+++++++..+.+.+... +...    
T Consensus       156 ~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~  234 (379)
T 3ke3_A          156 YIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQ  234 (379)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHH
T ss_pred             HHHHHHHHHHHcCCEEEEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHH
Confidence             9999999999999999999999 877777777789999999999 7778889999999776544432110 0000    


Q ss_pred             ----------cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEE
Q psy8850         228 ----------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI  296 (397)
Q Consensus       228 ----------~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  296 (397)
                                ..+...++++...++++.++++++.+ +++++.++..++++++++.|++ + ++.+..++....+.+..+
T Consensus       235 ~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~-g~~~~~~~~~~~~~i~~~  312 (379)
T 3ke3_A          235 WLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTD-K-GIESVAAEGFEAPGVVVS  312 (379)
T ss_dssp             HHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSBCTTCBCSSEEEE
T ss_pred             HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCccccCceEEEE
Confidence                      00111248889999999999998865 4899999999999999999998 4 776665544333444444


Q ss_pred             EecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         297 SFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       297 ~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      ..++. ...+...|.  ||.+.+|..|..+              .+..++.|||++..++|++||++++++|+++++++.
T Consensus       313 ~~~~~-~~~~~~~L~~~Gi~v~~g~~~~~~--------------~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~  377 (379)
T 3ke3_A          313 YTERD-DMHKGSAFAEAGLQIAAGVPLKVG--------------EPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL  377 (379)
T ss_dssp             ECSCH-HHHSSHHHHHTTCCCEECCCCSSC--------------CCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCc-chHHHHHHHHCCeEEeCCcccccc--------------ccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence            44321 111133443  8888888654321              011248899999988999999999999999988765

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=100.00  E-value=6.5e-32  Score=252.26  Aligned_cols=335  Identities=12%  Similarity=0.089  Sum_probs=235.5

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh---Hhhh
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA---AHFY   82 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l---~~~~   82 (397)
                      .+++|+.+++++.+.+.....+|           .....++++.++++++.+  ++++++|+++|+.+++.++   .   
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~~---   71 (375)
T 2fnu_A            8 EPCLDKEDKKAVLEVLNSKQLTQ-----------GKRSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEFS---   71 (375)
T ss_dssp             CCCCCHHHHHHHHHHHTSSCCSS-----------SHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCCC---
T ss_pred             CCCCCHHHHHHHHHHHHcCcccC-----------ChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcccC---
Confidence            45789999999999886522111           235788999999999987  8999999999999999998   5   


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHH
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC  162 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~  162 (397)
                       ++||+|+++.++|+++...+...   |.+++.++.++++.+|++++++++++++++|+++++   ||.+.|+++|.++|
T Consensus        72 -~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~  144 (375)
T 2fnu_A           72 -ADRNEIITTPISFVATANMLLES---GYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLC  144 (375)
T ss_dssp             -TTSCEEEECSSSCTHHHHHHHHT---TCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHH
T ss_pred             -CCCCEEEECCCccHhHHHHHHHC---CCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHH
Confidence             78999999999999999887776   999999999877789999999999999999888776   99999999999999


Q ss_pred             HhcCcEEEEecccccCccccc--cCcccccEEEeccc--cccCCCCceEEEEe--cCCCCccccccccCCc---ccccc-
Q psy8850         163 RSKGVIFHCDAAQAVGKIDIN--IQNYKVDLMSFSAH--KIYGPKGIGALYIR--RNPRTRIEAQIHGGGH---EYGLR-  232 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~~~~--~~~~~~d~~~~s~~--K~~g~~g~g~~~~~--~~~~~~~~~~~~~~~~---~~~~~-  232 (397)
                      ++||+++|+|++|+.+..+..  +..++ |++++|++  |++|+ |.|+++++  ++..+.+.+...++..   ...+. 
T Consensus       145 ~~~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (375)
T 2fnu_A          145 KKHSLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEV  222 (375)
T ss_dssp             HHHTCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEE
T ss_pred             HHcCCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCcccccccccc
Confidence            999999999999997765422  22222 56655555  97787 78988885  2243444433222210   00111 


Q ss_pred             --CCCC-chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC--CCCCCceEEEEecC--C-Ch
Q psy8850         233 --SGTL-ATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNF--I-EG  303 (397)
Q Consensus       233 --~~~~-~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~-~~  303 (397)
                        .+.+ ....+.   +++... .++++++.++..++++++.+.|++ ++++.+..++  ....+.++.+.++.  . +.
T Consensus       223 ~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (375)
T 2fnu_A          223 KSIGHNFRLNEIQ---SALGLSQLKKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFTCK  298 (375)
T ss_dssp             SSCCCBCCCCHHH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGGGH
T ss_pred             ccccccCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCCCcceEEEEEEeCccccchH
Confidence              1111 111111   111111 235677888999999999999999 8888877542  11224455667663  2 56


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHH-hhC---C--CccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLR-ALG---C--NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~-~~g---~--~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .++.+.|.  ||.+..  .|.+....+  .+. .+.   .  ......+.|||+++..++++|+++++++|+++++++
T Consensus       299 ~~l~~~L~~~gi~v~~--~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~  372 (375)
T 2fnu_A          299 KLILESLHKRGILAQV--HYKPIYQYQ--LYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF  372 (375)
T ss_dssp             HHHHHHHHHTTEECBC--CCCCGGGSH--HHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCccc--cccccccch--hhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            67877776  887773  233311000  010 000   0  001123789999999999999999999999998764

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=100.00  E-value=2.8e-33  Score=269.42  Aligned_cols=333  Identities=17%  Similarity=0.204  Sum_probs=249.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc----EEEeCChhHHHHHHHHH
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE----IIWTSGATESNNLAIKG   77 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----i~~~~g~t~a~~~~l~~   77 (397)
                      ++..++|+.|++++.+.+...+  ++|.+..|..+....+....+++++++++|+++++    |++++|+ +|+.+++.+
T Consensus        51 a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~a  129 (483)
T 1rv3_A           51 ASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTA  129 (483)
T ss_dssp             TTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHH
Confidence            4566889999999999887655  56665334444445567778899999999998653    6666666 888888888


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHH--------HHHhhCC--cEEEEeccC-CCCCCCHHHHHHHhc-CCceEEEEecc
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDG--FRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLV  145 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~--------~~~~~~g--~~v~~v~~~-~~~~~d~~~l~~~i~-~~~~~v~~~~~  145 (397)
                      ++    ++||+|++++++|+++....        ...   |  .+++.++++ +++.+|+++|+++++ ++|++|++ ++
T Consensus       130 ll----~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~---G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~  201 (483)
T 1rv3_A          130 LV----EPHGRIMGLDLPDGGHLTHGFMTDKKKISAT---SIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GT  201 (483)
T ss_dssp             HT----CTTCEEEEECGGGTCCGGGCCBCSSCBCSHH---HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CC
T ss_pred             hc----CCCCEEEEecCccCcCcchhhhhcccCcccc---cceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eC
Confidence            87    89999999999998886432        222   3  456666556 578899999999998 79999999 88


Q ss_pred             cCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcc---cccEEEecccc-ccCCCCceEEEEecCCCCccc--
Q psy8850         146 NNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIE--  219 (397)
Q Consensus       146 ~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~---~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~--  219 (397)
                      +|++ .+.|+++|.++|+++|++|++|++|+.|....+....   ++|++++|+|| +.||.| |+++++++... +.  
T Consensus       202 sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~-~~~~  278 (483)
T 1rv3_A          202 SCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS-VDPK  278 (483)
T ss_dssp             SSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC-----
T ss_pred             CcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhh-hccc
Confidence            8888 8899999999999999999999999866554433333   68999999999 778887 99999976431 11  


Q ss_pred             ----------cccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC
Q psy8850         220 ----------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN  288 (397)
Q Consensus       220 ----------~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  288 (397)
                                ..+..  .......|+++...++++.++++... .+++++.+++.++++++.+.|.+ + ++.+..+.. 
T Consensus       279 ~g~~~~y~~~~~~~~--~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~-  353 (483)
T 1rv3_A          279 TGKEILYNLESLINS--AVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE-L-GYKIVTGGS-  353 (483)
T ss_dssp             ---CCBCCHHHHHHH--HHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC-
T ss_pred             cCcchhhHHHHHhhh--hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh-c-CCEeccCCC-
Confidence                      00000  00111256788888999988998875 46888999999999999999999 5 888776422 


Q ss_pred             CCCceEEEEec--CCChHHHHHHhC--CcEec----ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC----H
Q psy8850         289 RIPHNLNISFN--FIEGESLLMAIK--DIAVS----SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT----E  356 (397)
Q Consensus       289 ~~~~~~~~~~~--~~~~~~~~~~l~--~i~~~----~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~----~  356 (397)
                       ..+++++.+.  +.+..++...|.  ||.+.    +|..+.                  ...+.+||+++.+++    +
T Consensus       354 -~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~------------------~~~~~iRis~~~~~t~g~~~  414 (483)
T 1rv3_A          354 -DNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSA------------------LRPSGLRLGTPALTSRGLLE  414 (483)
T ss_dssp             -SSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCT------------------TSCCEEEEECHHHHHTTCCH
T ss_pred             -CCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcC------------------CCCceEEeecCCcccCCCCH
Confidence             1345566664  356677777665  88887    654211                  123789999987666    9


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8850         357 KEIDFTIKLLKMKVKK  372 (397)
Q Consensus       357 ~~i~~~~~~l~~~~~~  372 (397)
                      +|+++++++|.+++..
T Consensus       415 edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          415 KDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999875

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=1.1e-31  Score=249.52  Aligned_cols=306  Identities=18%  Similarity=0.152  Sum_probs=237.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++|+.+++++.+.+.....+|..           ...++++.++++++++++++++|+|+++|+.+++.++        |
T Consensus        39 ~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~--------d   99 (361)
T 3ftb_A           39 GIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF--------E   99 (361)
T ss_dssp             CSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC--------S
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc--------C
Confidence            46899999999988764433221           3478899999999998889999999999999998866        7


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHHh
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRS  164 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~  164 (397)
                      +|+++.++|+++...+...   |.+++.+|.++++.++++++++++++ ++++++++++||||.+.|   +++|+++|++
T Consensus       100 ~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~  175 (361)
T 3ftb_A          100 KILIIVPSYAEYEINAKKH---GVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEE  175 (361)
T ss_dssp             EEEEEESCCTHHHHHHHHT---TCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHH
T ss_pred             cEEEecCChHHHHHHHHHc---CCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhh
Confidence            8999999999998887777   99999999998777899999999998 999999999999999998   5668888889


Q ss_pred             cCcEEEEecccccCccc-----cc-cCcccccEEEeccccccCCCC--ceEEE-EecCCCCccccccccCCccccccCCC
Q psy8850         165 KGVIFHCDAAQAVGKID-----IN-IQNYKVDLMSFSAHKIYGPKG--IGALY-IRRNPRTRIEAQIHGGGHEYGLRSGT  235 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~-----~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (397)
                      ||+++|+|++|+.....     .. ....+.++++.|++|.+|+.|  +|+++ .+++..+.+.....         ..+
T Consensus       176 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~---------~~~  246 (361)
T 3ftb_A          176 KKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN---------PWN  246 (361)
T ss_dssp             HTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC---------TTC
T ss_pred             cCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC---------CCC
Confidence            99999999999843321     11 112245588899999666434  68877 45444333332211         235


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEE-EeCCCCCCCCceEEEEecCCChHHHHHHhC--C
Q psy8850         236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPHNLNISFNFIEGESLLMAIK--D  312 (397)
Q Consensus       236 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~  312 (397)
                      .+.....++.++++. .+++++..+++.++++++.+.|++ ++++. +..+.    +.++++.+++.+..++.+.|.  |
T Consensus       247 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~g  320 (361)
T 3ftb_A          247 INCFAEMAAINCLKD-TNYIEESLLWIKKERKRFIEELNK-IGFIKRVFSPH----ANFVLCRLENISGEKLYDSLLKED  320 (361)
T ss_dssp             SCHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHHHHHHH-SSSEEEEECCS----SSEEEEEESSSCHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCCceecCCC----CeEEEEEcCCCCHHHHHHHHHHCC
Confidence            566667777677764 456788899999999999999998 88887 65443    446677887667778888776  8


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      |.+.+|..|..                 ..++++|++++   +.+++++++++|+++.+
T Consensus       321 i~v~~g~~~~~-----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          321 IVIRRCCNFIG-----------------LDDSFVRFAIK---DEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             EECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred             eEEeeCccCCC-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence            99999876643                 12489999997   78899999999987764

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=100.00  E-value=1.6e-32  Score=254.73  Aligned_cols=319  Identities=18%  Similarity=0.183  Sum_probs=233.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||++..+++++.+++++.+.+..+         ..+....+...++++.+++++|.+++++++++|+++|+.+++.++. 
T Consensus        18 l~~~~~~~~~~~v~~a~~~~~~~~---------~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~-   87 (359)
T 1svv_A           18 FVNDYSVGMHPKILDLMARDNMTQ---------HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL-   87 (359)
T ss_dssp             CSCSCSSCCCHHHHHHHHHHTTCC---------CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC-
T ss_pred             ecCCCcCCCCHHHHHHHHHHHhhc---------cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh-
Confidence            567777788999999999988631         1112234578889999999999988899999999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHH--HHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC-------ceEEEEecccCcccc
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDS--IRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD-------TILVSVMLVNNEIGV  151 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~--~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~-------~~~v~~~~~~~~tG~  151 (397)
                         ++|++|++++++|+++...  +...   |.+++.+|.+ ++.+|+++|+++++++       +++|+++++ ||||.
T Consensus        88 ---~~gd~vl~~~~~~~~~~~~~~~~~~---g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~  159 (359)
T 1svv_A           88 ---RPWEAVIATQLGHISTHETGAIEAT---GHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGT  159 (359)
T ss_dssp             ---CTTEEEEEETTSHHHHSSTTHHHHT---TCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSC
T ss_pred             ---CCCCEEEEcccchHHHHHHHHHhcC---CCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCce
Confidence               7899999999999998774  4433   9999999986 6779999999999876       899999998 79999


Q ss_pred             ccc---HHHHHHHHHhcCcEEEEeccc---ccCccccccCc----ccccEEEeccccccCCCCceEEEEecCCCCccccc
Q psy8850         152 IQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQN----YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ  221 (397)
Q Consensus       152 ~~~---l~~i~~l~~~~gi~livD~a~---~~~~~~~~~~~----~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~  221 (397)
                      ++|   +++|.++|++||+++|+|++|   +.+..+.+...    ...|++++|++|++++.|.|+++++++..+.+...
T Consensus       160 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~~  239 (359)
T 1svv_A          160 QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHL  239 (359)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHH
T ss_pred             ecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHHHHHHH
Confidence            999   888999999999999999999   44544433332    35799999999987787889999988777666543


Q ss_pred             cccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC
Q psy8850         222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI  301 (397)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (397)
                      ...+.    ... ..+.....++.++++.  .+++++.+++.++++++.+.| + .+++.+..+..   ..++++.++  
T Consensus       240 ~~~~~----~~~-~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~L-~-~~~~~~~~~~~---~~~~~~~~~--  305 (359)
T 1svv_A          240 IKQRG----ALM-AKGWLLGIQFEVLMKD--NLFFELGAHSNKMAAILKAGL-E-ACGIRLAWPSA---SNQLFPILE--  305 (359)
T ss_dssp             HHHTT----CCC-TTTHHHHHHHHHHTST--THHHHHHHHHHHHHHHHHHHH-H-HTTCCBSSCCS---SSEECBEEE--
T ss_pred             HhcCC----ccc-ccchhhHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHh-c-cCCeEEccCCc---cceEEEEcC--
Confidence            21111    000 1111222223222221  246778899999999999999 5 57776664432   334344443  


Q ss_pred             ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                        .++.+.|.   ||.+... .                   ....++|||+++..++++++++++++|+++++++
T Consensus       306 --~~~~~~l~~~~gi~v~~~-~-------------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          306 --NTMIAELNNDFDMYTVEP-L-------------------KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             --HHHHHHHTTTEECEEEEE-E-------------------TTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHhcCEEEEec-c-------------------cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence              46766664   5665210 0                   0123789999988889999999999999887653

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=2.9e-33  Score=265.88  Aligned_cols=327  Identities=12%  Similarity=0.065  Sum_probs=237.9

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~---~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +++.+.+++.+.+...... .. .|..    .....++++.+++++    |   +++++|++|+|+++|+.+++.++.  
T Consensus        59 ~~~~v~~a~~~~~~~~~~~-~~-~y~~----~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~--  130 (425)
T 1vp4_A           59 PRKELAEIAKEIIEKEYHY-TL-QYST----TEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL--  130 (425)
T ss_dssp             CHHHHHHHHHHHHHHSHHH-HT-SCCC----TTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHhhcchh-hc-CCCC----CCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC--
Confidence            5688999999888651100 00 1111    122455666666666    8   567789999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC--------CceEE-EEecccCccccc
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--------DTILV-SVMLVNNEIGVI  152 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~--------~~~~v-~~~~~~~~tG~~  152 (397)
                        ++||+|++..++|+++...+...   |.+++.+|.++++ +|+++|++++++        ++++| ++++++||||.+
T Consensus       131 --~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~  204 (425)
T 1vp4_A          131 --DDESYCVLDDPAYLGAINAFRQY---LANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVT  204 (425)
T ss_dssp             --CTTCEEEEEESCCHHHHHHHHTT---TCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCC
T ss_pred             --CCCCEEEEeCCCcHHHHHHHHHc---CCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCc
Confidence              78999999999999998777665   9999999987665 899999999876        78887 578999999999


Q ss_pred             cc---HHHHHHHHHhcCcEEEEecccccCcc----ccccC---cccccEEEeccccccCCCC--ceEEEEecCCCCcccc
Q psy8850         153 QP---ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQ---NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEA  220 (397)
Q Consensus       153 ~~---l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~---~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~  220 (397)
                      +|   +++|+++|++||+++|+|++|+.+..    ..++.   ..+.++++.|++|.+| .|  +|+++++++..+.+..
T Consensus       205 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~  283 (425)
T 1vp4_A          205 TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQ  283 (425)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCHHHHHHHHH
Confidence            98   56789999999999999999985321    12221   1246788999999766 45  6999988665544433


Q ss_pred             ccccCCccccccCCCCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEE
Q psy8850         221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLN  295 (397)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~  295 (397)
                      ....      .. .+.+.....++.++++..  .+++++..+++.++++++.+.|++.++   ++.+..+..   +.+++
T Consensus       284 ~~~~------~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~---g~~~~  353 (425)
T 1vp4_A          284 AKQS------AD-LCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEG---GLFIW  353 (425)
T ss_dssp             HHHH------HH-SSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSB---SSEEE
T ss_pred             Hhhh------hc-CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCc---cEEEE
Confidence            2211      11 133555556666677653  446778888999999999999988435   577654432   45667


Q ss_pred             EEecC-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         296 ISFNF-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       296 ~~~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.++. .+..++.+.|.  ||.+.+|..|.+.               ....++|||+++.. +++++++++++|++++++
T Consensus       354 ~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~  417 (425)
T 1vp4_A          354 LTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY---------------DEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLE  417 (425)
T ss_dssp             EECCTTCCTTTTHHHHHHHTEECEEGGGGCTT---------------CCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHCCCEEECchhhcCC---------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHH
Confidence            77763 34556666665  9999998766531               01237899999874 899999999999999988


Q ss_pred             HHhc
Q psy8850         373 LREL  376 (397)
Q Consensus       373 ~~~~  376 (397)
                      +.+.
T Consensus       418 ~~~~  421 (425)
T 1vp4_A          418 YGKE  421 (425)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7654

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=2.4e-32  Score=257.36  Aligned_cols=321  Identities=17%  Similarity=0.172  Sum_probs=240.9

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +++.+.+++.+.+... +++.. .+.+.+...+...++++.++++++.+  +.+++++|++|+..++.++.    ++|++
T Consensus        58 ~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~l~~~~----~~gd~  129 (399)
T 3tqx_A           58 DHPALIKTAQTVVEQY-GFGMA-SVRFICGTQTIHKELEKDISEFLGTD--DTILYSSCFDANGGLFETLL----GPEDA  129 (399)
T ss_dssp             TCHHHHHHHHHHHHHH-CSCCC-SCCCCCCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHC----CTTCE
T ss_pred             CCHHHHHHHHHHHHHh-CCCCC-CcCccccCchHHHHHHHHHHHHHCCC--cEEEECchHHHHHHHHHHhc----CCCCE
Confidence            5799999999998763 22222 12222233467889999999999987  45555667889999988877    79999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHHH
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELC  162 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l~  162 (397)
                      |+++.++|+++...+...   |.++..+|.     +|++++++++++      ++++|++++++||||.+.|+++|.++|
T Consensus       130 v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~  201 (399)
T 3tqx_A          130 IISDELNHASIIDGIRLC---KAQRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLA  201 (399)
T ss_dssp             EEEETTCCHHHHHHHHSC---CSEEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHH
T ss_pred             EEECCcccHHHHHHHHHc---CCceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHH
Confidence            999999999998876665   899998886     378899998876      899999999999999999999999999


Q ss_pred             HhcCcEEEEecccccCccc------cccCc--ccccEEEeccccccC-CCCceEEEEecCCCCccccccccCCccccccC
Q psy8850         163 RSKGVIFHCDAAQAVGKID------INIQN--YKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS  233 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~~------~~~~~--~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (397)
                      ++||+++|+|++|+.+...      .+...  .++|+++.|+||.++ +.| |+++.+++..+.+......    . ...
T Consensus       202 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~~~----~-~~~  275 (399)
T 3tqx_A          202 DKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHKEIIEWLRNRSRP----Y-LFS  275 (399)
T ss_dssp             HHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECHHHHHHHHHHCHH----H-HSS
T ss_pred             HHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCHHHHHHHHHhCcc----e-ecc
Confidence            9999999999999755422      11111  157999999999555 776 9999987655554432111    0 113


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC-
Q psy8850         234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAIK-  311 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-  311 (397)
                      ++.+...++++.++++...++.+++.+++.++++++.+.|++ + ++.+..+ .   +.++++.++.. +..++...|. 
T Consensus       276 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~  349 (399)
T 3tqx_A          276 NTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEK-L-GFQLVPG-N---HPIIPVMLGDAQLATNMADHLLQ  349 (399)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC-S---SSEEEEEEECHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-c-CCCcCCC-C---CCEEEEEeCCHHHHHHHHHHHHH
Confidence            456677777777888876556788999999999999999998 4 5555422 2   45666776642 4566777665 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                       ||.+.++.++..                ....+++||+++..++++++++++++|+++++++
T Consensus       350 ~gi~v~~~~~~~~----------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          350 EGIYVVGFSYPVV----------------PMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             TTEECCEECTTTS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEeeeCCCCC----------------CCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence             888887533211                1224789999998899999999999999998765

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=1.3e-32  Score=257.20  Aligned_cols=316  Identities=11%  Similarity=0.065  Sum_probs=234.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+++++.+.+....    . .|.. .    . .++++.++++++      +++++|++|+|+++|+++++.++.  
T Consensus        36 ~~~~~v~~a~~~~~~~~~----~-~y~~-~----~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~--  102 (377)
T 3fdb_A           36 STCPAVLQAITDAVQREA----F-GYQP-D----G-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT--  102 (377)
T ss_dssp             CCCHHHHHHHHHHHHTTC----C-SSCC-S----S-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--
T ss_pred             CCCHHHHHHHHHHHHcCC----C-CCCC-C----C-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc--
Confidence            578999999999887511    0 1111 1    1 345566666655      667789999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI  158 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i  158 (397)
                        ++|++|+++.++|+++...+...   |.+++.+|.+.+  +|+++++++++++++++++++++||||.++|   +++|
T Consensus       103 --~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l  175 (377)
T 3fdb_A          103 --PAQSKVIVPTPAYPPFFHLLSAT---QREGIFIDATGG--INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNEL  175 (377)
T ss_dssp             --CTTCCEEEEESCCTHHHHHHHHH---TCCEEEEECTTS--CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHH
T ss_pred             --CCCCEEEEcCCCcHhHHHHHHHc---CCEEEEccCCCC--CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence              78999999999999998888777   999999999876  8999999999999999999999999999987   5667


Q ss_pred             HHHHHhcCcEEEEecccccCc-----cccccCc---ccccEEEeccccccCCCC--ceEEEE-ecCCCCccccccccCCc
Q psy8850         159 GELCRSKGVIFHCDAAQAVGK-----IDINIQN---YKVDLMSFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~-----~~~~~~~---~~~d~~~~s~~K~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~  227 (397)
                      +++|++||+++|+|++|+...     ...++..   .+.++++.|++|.+|..|  +|++++ +++....+....     
T Consensus       176 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~-----  250 (377)
T 3fdb_A          176 CDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLS-----  250 (377)
T ss_dssp             HHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSC-----
T ss_pred             HHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHH-----
Confidence            778999999999999998522     1222222   245688999999665444  687776 433333333221     


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHHH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESL  306 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  306 (397)
                        .....+.+.....+..++++...++++++.+++.++++++.+.|++.++++.+..+..   +.++++.++.. ...++
T Consensus       251 --~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  325 (377)
T 3fdb_A          251 --PVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQA---TYLMWIDFRDTTIEGSP  325 (377)
T ss_dssp             --HHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSB---CSEEEEECTTSCCCSCH
T ss_pred             --HhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCe---eEEEEEECcccCCCHHH
Confidence              1112345666666666777755556788899999999999999988567888776543   34456777642 22344


Q ss_pred             HHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       307 ~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ...+.   ||.+.+|..|...                 ..+++||+++.  +++++++++++|++++++
T Consensus       326 ~~~l~~~~gi~v~~g~~~~~~-----------------~~~~~Ris~~~--~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          326 SEFFIEKAKVAMNDGAWFGED-----------------GTGFCRLNFAT--SREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             HHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCEEecCChhccCC-----------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence            44442   8999998766540                 24899999984  899999999999988754

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=2.3e-32  Score=255.54  Aligned_cols=315  Identities=13%  Similarity=0.090  Sum_probs=233.0

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCC--CC-cEEEeCChhHHHHHHHHHhHhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YAD--PR-EIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~--~~-~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +++.+++++.+.+....      .+.  |.......++++.+++++    |.+  ++ +|++++|+++|+.+++.++.  
T Consensus        39 ~~~~v~~a~~~~~~~~~------~~~--y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~--  108 (376)
T 2dou_A           39 PPEAPLKALAEALNDPT------TYG--YCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT--  108 (376)
T ss_dssp             CCHHHHHHHHHHTTCGG------GSS--CCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHhCCC------cCC--CCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc--
Confidence            57899999988875410      111  111235667777777776    874  45 89999999999999999886  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI  158 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i  158 (397)
                        ++||+|++..++|+++...+...   |.+++.+|.+++..+|++++++++++++++|++++++||||.++|   +++|
T Consensus       109 --~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l  183 (376)
T 2dou_A          109 --EPEDLLLLPEVAYPSYFGAARVA---SLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEA  183 (376)
T ss_dssp             --CTTCEEEEESSCCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred             --CCCCEEEECCCCcHhHHHHHHHc---CCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHHH
Confidence              78999999999999998877766   999999998444468999999999888999999999999999988   5788


Q ss_pred             HHHHHhcCcEEEEecccccCcc---c---ccc-CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccc
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKI---D---INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY  229 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~---~---~~~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~  229 (397)
                      +++|++||+++|+|++|+.+..   +   .+. ...+.++++.|++|.+|+.|  +|+++++++..+.+......     
T Consensus       184 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~-----  258 (376)
T 2dou_A          184 LGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGV-----  258 (376)
T ss_dssp             HHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHH-----
T ss_pred             HHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHh-----
Confidence            9999999999999999985321   1   122 11256789999999665444  79999887655544432211     


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLM  308 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  308 (397)
                       + ..+.+.....++.++++...+++++..+++.++++++.+.|++ +  +.+..+..   +.++++.++ +.+..++.+
T Consensus       259 -~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~  330 (376)
T 2dou_A          259 -I-DFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKG-V--LSLLPPRA---TMYLWGRLPEGVDDLEFGL  330 (376)
T ss_dssp             -H-CCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTT-T--SEECCCCB---SSEEEEECCTTCCHHHHHH
T ss_pred             -c-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-h--cCccCCCe---eEEEEEECCCCCCHHHHHH
Confidence             1 1234555556666677654456788889999999999999998 4  55544322   345667776 345667777


Q ss_pred             HhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         309 AIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       309 ~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .|.  ||.+.+|..|.+                 ...+++||+++.  +++++++++++|++++
T Consensus       331 ~l~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          331 RLVERGVALAPGRGFGP-----------------GGKGFVRIALVR--PLEELLEAAKRIREAL  375 (376)
T ss_dssp             HHHHTTEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred             HHHHCCEEEcCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence            775  999998865542                 124789999985  7999999999998754

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=2e-32  Score=257.03  Aligned_cols=311  Identities=15%  Similarity=0.123  Sum_probs=229.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~--~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++.+.+....    . .|...    ....++++.+++++    |+  +++++++++|+++|+.+++.++.  
T Consensus        54 ~~~~~v~~a~~~~~~~~~----~-~y~~~----~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~--  122 (389)
T 1o4s_A           54 PTPEPVVEEAVRFLQKGE----V-KYTDP----RGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL--  122 (389)
T ss_dssp             CCCHHHHHHHHHHHTTCC----C-CCCCT----TCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHhcCC----C-CCCCC----CCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC--
Confidence            457899999998886421    1 12211    12345555555555    75  56789999999999999999886  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|++++++|+++...+...   |.+++.+|.++  ++.+|+++|++++++++++|++++++||||.++|   ++
T Consensus       123 --~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~  197 (389)
T 1o4s_A          123 --DPGDEVIVFSPVWVSYIPQIILA---GGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLE  197 (389)
T ss_dssp             --CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             --CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHH
Confidence              78999999999999998877666   99999999874  4578999999999989999999999999999988   88


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                      +|+++|++||+++|+|++|+.+..   ..++..    .+.|+++.|+||.+|+.|  +|+++++++..+.+......   
T Consensus       198 ~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~---  274 (389)
T 1o4s_A          198 GLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSH---  274 (389)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHhhh---
Confidence            999999999999999999985443   112211    367999999999767556  79999987655544433221   


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLL  307 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (397)
                         ... +.+.....+..++++.   +++++.+++.++++++.+.|++ + ++.+..+..   +.++++.++ .+..++.
T Consensus       275 ---~~~-~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~-~~~~~l~  341 (389)
T 1o4s_A          275 ---TTS-CINTVAQYAALKALEV---DNSYMVQTFKERKNFVVERLKK-M-GVKFVEPEG---AFYLFFKVR-GDDVKFC  341 (389)
T ss_dssp             ---HTC-SCCHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCSB---SSEEEEECS-SCHHHHH
T ss_pred             ---ccc-CCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHh-c-CCeeecCCc---ceEEEEeCC-CCHHHHH
Confidence               111 2233333333344432   3677888999999999999998 5 665554322   345566665 5677787


Q ss_pred             HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +.|.   ||.+.+|..|..                   ++++||+++.  +++++++++++|.++++
T Consensus       342 ~~l~~~~gi~v~~g~~f~~-------------------~~~~Ris~~~--~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          342 ERLLEEKKVALVPGSAFLK-------------------PGFVRLSFAT--SIERLTEALDRIEDFLN  387 (389)
T ss_dssp             HHHHHHHCEECEEGGGGTC-------------------TTEEEEECCS--CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCEEEeCchhcCC-------------------CCeEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence            7763   899988865432                   2689999984  89999999999988763

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=1.1e-31  Score=252.06  Aligned_cols=324  Identities=11%  Similarity=0.089  Sum_probs=234.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHH-HHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEK-AIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.+.+++.+.+...    .. .|...  ..+ ..+.+.+.+.+.+|  +++++|++|+|+++|+.+++.++.    +
T Consensus        41 ~~~~~v~~a~~~~~~~~----~~-~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~----~  109 (390)
T 1d2f_A           41 ATAPCIIEALNQRLMHG----VF-GYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS----E  109 (390)
T ss_dssp             CCCHHHHHHHHHHHTTC----CC-CCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS----C
T ss_pred             CCCHHHHHHHHHHHhCC----CC-CCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc----C
Confidence            46899999999988541    11 22211  122 33333344444446  667789999999999999999987    7


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC---CCCHHHHHHHhcC-CceEEEEecccCccccccc---HHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG---LITLSQLEEKICS-DTILVSVMLVNNEIGVIQP---ILE  157 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~---~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~---l~~  157 (397)
                      +||+|++..++|+++...+...   |.+++.+|.+.++   .+|+++|++++++ ++++|++++++||||.++|   +++
T Consensus       110 ~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~  186 (390)
T 1d2f_A          110 TGEGVVIHTPAYDAFYKAIEGN---QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI  186 (390)
T ss_dssp             TTCEEEEEESCCHHHHHHHHHT---TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred             CCCEEEEcCCCcHHHHHHHHHC---CCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHH
Confidence            8999999999999998887766   9999999986432   4899999999986 8999999999999999988   788


Q ss_pred             HHHHHHhcCcEEEEecccccCcc----ccccCccc---ccEEEeccccccCCCC--ceEEEEe-cCCCCccccccccCCc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKI----DINIQNYK---VDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGH  227 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~---~d~~~~s~~K~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~  227 (397)
                      |+++|++||+++|+|++|+.+..    ..++..+.   .|. +.|+||.+|+.|  +|+++++ ++....+.....+   
T Consensus       187 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~---  262 (390)
T 1d2f_A          187 MADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKG---  262 (390)
T ss_dssp             HHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHT---
T ss_pred             HHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhh---
Confidence            99999999999999999985321    22222222   266 999999666445  6999986 3443444332210   


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGES  305 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  305 (397)
                        ....++.+.....+..++++...+.+++..+++.++++++.+.|++.++++.+..+..   +.++++.++.  .+..+
T Consensus       263 --~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  337 (390)
T 1d2f_A          263 --RDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQS---TYLAWLDLRPLNIDDNA  337 (390)
T ss_dssp             --TSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSB---CSEEEEECGGGCCCHHH
T ss_pred             --hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCc---cEEEEEEccccCCCHHH
Confidence              1222356666666666777754456788889999999999999987456765544322   3445677764  46677


Q ss_pred             HHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       306 ~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +...|.   ||.+.+|..|.+                 ..++++||+++.  +++++++++++|.++++++
T Consensus       338 l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~~  389 (390)
T 1d2f_A          338 LQKALIEQEKVAIMPGYTYGE-----------------EGRGFVRLNAGC--PRSKLEKGVAGLINAIRAV  389 (390)
T ss_dssp             HHHHHHHTTCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCEEeeCccccCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence            777663   899998865542                 123789999996  5899999999999988764

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=100.00  E-value=3.8e-32  Score=256.29  Aligned_cols=320  Identities=14%  Similarity=0.172  Sum_probs=237.8

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +++.+++++.+.+.. ++.... .+.+.+...+...++++.+++++|++  +.+++++|++|+..++.++.    ++|++
T Consensus        60 ~~~~v~~a~~~~~~~-~~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~~~~~~----~~gd~  131 (401)
T 1fc4_A           60 NHPDLIAAAKAGMDS-HGFGMA-SVRFICGTQDSHKELEQKLAAFLGME--DAILYSSCFDANGGLFETLL----GAEDA  131 (401)
T ss_dssp             TCHHHHHHHHHHHHH-HCSCCC-SCHHHHCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHC----CTTCE
T ss_pred             CCHHHHHHHHHHHHH-hCCCCC-CCCcccCCcHHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHc----CCCCE
Confidence            489999999998865 222221 22222212467889999999999987  44556677889999888876    78999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHHH
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELC  162 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l~  162 (397)
                      |+++.++|+++...+...   |.+++.++.     +|++++++++++      ++++|++++++||||.+.|+++|.++|
T Consensus       132 v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~  203 (401)
T 1fc4_A          132 IISDALNHASIIDGVRLC---KAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLA  203 (401)
T ss_dssp             EEEETTCCHHHHHHHHTS---CSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHH
T ss_pred             EEEcchhHHHHHHHHHHc---CCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHH
Confidence            999999999887765544   999988874     489999998875      789999999999999999999999999


Q ss_pred             HhcCcEEEEecccccCcc-c--------cccCcccccEEEecccccc-CCCCceEEEEecCCCCccccccccCCcccccc
Q psy8850         163 RSKGVIFHCDAAQAVGKI-D--------INIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR  232 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~-~--------~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (397)
                      ++||+++|+|++|+.+.. +        .++.. +.|+++.|+||.+ |+.| |+++++++..+.+......    ..+ 
T Consensus       204 ~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~~----~~~-  276 (401)
T 1fc4_A          204 DKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSRP----YLF-  276 (401)
T ss_dssp             HHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCHH----HHH-
T ss_pred             HHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCcC----cee-
Confidence            999999999999974443 1        22222 5799999999954 7666 9999987655544332110    011 


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC
Q psy8850         233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK  311 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  311 (397)
                      .++.+...++++.++++.... .+++.+++.++++++.+.|++ + ++.+.. .   .+.++++.++. .+..++.+.|.
T Consensus       277 ~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-~---~~~~~~~~~~~~~~~~~l~~~l~  349 (401)
T 1fc4_A          277 SNSLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSA-A-GFTLAG-A---DHAIIPVMLGDAVVAQKFARELQ  349 (401)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH-T-TCCBCC-S---SSSEEEEEEECHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCcccC-C---CCCEEEEEcCChHHHHHHHHHHH
Confidence            235566677777778876643 467888999999999999998 5 655542 1   25667777764 24566777665


Q ss_pred             --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                        ||.+.++..+..                +...+++||+++..++++++++++++|++++++++
T Consensus       350 ~~gi~v~~~~~~~~----------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  398 (401)
T 1fc4_A          350 KEGIYVTGFFYPVV----------------PKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             HTTEECCEECTTSS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCcEEeeecCCCC----------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence              899988764432                01237899999988899999999999999987653

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=7e-32  Score=256.74  Aligned_cols=328  Identities=14%  Similarity=0.142  Sum_probs=236.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCC-cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPR-EIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~-~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++++.+.+++.+.+.... .... .|.......+..+.+.+.+.+.+|  ++++ +|++++|+++|+.++++++.    +
T Consensus        50 ~~~~~v~~a~~~~~~~~~-~~~~-~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~----~  123 (429)
T 1yiz_A           50 HAPKYALNALAAAANSPD-PLAN-QYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV----D  123 (429)
T ss_dssp             CCCHHHHHHHHHHHTCSC-GGGG-SCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC----C
T ss_pred             CCCHHHHHHHHHHHhccc-cCcc-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc----C
Confidence            467999999999886510 0000 111111122333444444444457  4677 89999999999999999886    7


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC----------CCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN----------NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~----------~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                      +|++|++..+.|+++...+...   |.+++.+|.+.          ++.+|+++|++++++++++|++++++||||.++|
T Consensus       124 ~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~  200 (429)
T 1yiz_A          124 EGDEVIIIEPFFDCYEPMVKAA---GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMD  200 (429)
T ss_dssp             TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             CCCEEEEcCCCchhHHHHHHHc---CCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCC
Confidence            8999999999999998877665   99999999875          3568999999999989999999999999999997


Q ss_pred             ---HHHHHHHHHhcCcEEEEecccccCc------ccc-ccC-cccccEEEeccccccCCCC--ceEEEEecCCCCccccc
Q psy8850         155 ---ILEIGELCRSKGVIFHCDAAQAVGK------IDI-NIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQ  221 (397)
Q Consensus       155 ---l~~i~~l~~~~gi~livD~a~~~~~------~~~-~~~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~  221 (397)
                         +++|+++|++||+++|+|++|+...      .++ .+. ..+.|+++.|+||.+|+.|  +|+++++++..+.+...
T Consensus       201 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~  280 (429)
T 1yiz_A          201 RAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMV  280 (429)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHHHHHHHHH
Confidence               7899999999999999999998421      122 121 3468999999999766556  89999887655444332


Q ss_pred             cccCCccccccCCCCchhHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceE
Q psy8850         222 IHGGGHEYGLRSGTLATHQIVGMGEAFRL-----A--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL  294 (397)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~-----~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  294 (397)
                      ..       ....+.+.....++.++++.     .  .+.+++..+++.++++++.+.|++ + ++.+..+..   +.++
T Consensus       281 ~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~  348 (429)
T 1yiz_A          281 HQ-------NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE-V-GMNPTVPQG---GYFM  348 (429)
T ss_dssp             HH-------TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH-H-TCEEEECSB---SSEE
T ss_pred             Hh-------hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCc---ceEE
Confidence            21       11224455556666677776     3  345788889999999999999998 5 666664432   4566


Q ss_pred             EEEecCC-------------ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         295 NISFNFI-------------EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       295 ~~~~~~~-------------~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      ++.++..             +..++...|.   ||.+.+|..|....        .    .....++|||+++.  ++++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~--------~----~~~~~~~iRis~~~--~~e~  414 (429)
T 1yiz_A          349 VADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP--------N----KHLGEDFVRYCFFK--KDEN  414 (429)
T ss_dssp             EEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGG--------G----GGGTTTEEEEECCS--CHHH
T ss_pred             EEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCc--------c----cCCCCCeEEEEecC--CHHH
Confidence            7777642             3456766552   89999886554300        0    00124789999984  8999


Q ss_pred             HHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKV  370 (397)
Q Consensus       359 i~~~~~~l~~~~  370 (397)
                      |++++++|++++
T Consensus       415 i~~~l~~l~~~l  426 (429)
T 1yiz_A          415 LQKAAEILRKWK  426 (429)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhc
Confidence            999999998875

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=100.00  E-value=2.2e-31  Score=258.59  Aligned_cols=347  Identities=17%  Similarity=0.184  Sum_probs=234.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      |+..+++.|+.+...   ++.. +.|+....+..++...+...++++++++++|.+++++++++|||+|+.+++.++...
T Consensus       113 ~~~~~~~~~~~~~~~---~l~~-~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~  188 (515)
T 2jis_A          113 NQLFSGLDPHALAGR---IITE-SLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQ  188 (515)
T ss_dssp             SSSCCCCCHHHHHHH---HHHH-HHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEeeCCCCHHHHHHH---HHHH-HhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHH
Confidence            555555556555553   3332 224443244445566678888999999999998788999999999999998876432


Q ss_pred             h----ccCCC------EEEEcCCCChhhHHHHHHHhhCCc---EEEEeccCCCCCCCHHHHHHHhcC------CceEEEE
Q psy8850          82 Y----KKRGK------HIITVQTEHKSVLDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKICS------DTILVSV  142 (397)
Q Consensus        82 ~----~~~g~------~vl~~~~~~~s~~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~  142 (397)
                      +    ..+|+      +|+++..+|+++..++..+   |.   +++.+|.++++.+|+++|++++++      +|++|++
T Consensus       189 ~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~---g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~  265 (515)
T 2jis_A          189 RYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL---GLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSA  265 (515)
T ss_dssp             HCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc---CCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEE
Confidence            1    12354      8999999999999988877   55   899999988899999999999976      4899999


Q ss_pred             ecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccc-----cCcc-cccEEEecccc-ccCCCCceEEEEecC--
Q psy8850         143 MLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQNY-KVDLMSFSAHK-IYGPKGIGALYIRRN--  213 (397)
Q Consensus       143 ~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~-----~~~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~--  213 (397)
                      ++++|++|.+.|+++|+++|++||+++|+|++|+.+..+.+     +..+ ++|++++|+|| +++|.|+|+++++++  
T Consensus       266 ~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~  345 (515)
T 2jis_A          266 TSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSN  345 (515)
T ss_dssp             EBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSC
T ss_pred             eCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHH
Confidence            99999999999999999999999999999999997776543     3333 78999999999 456888999999976  


Q ss_pred             CCCc----cccccccCCc--cccccCCCCch-----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEE
Q psy8850         214 PRTR----IEAQIHGGGH--EYGLRSGTLAT-----HQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIY  281 (397)
Q Consensus       214 ~~~~----~~~~~~~~~~--~~~~~~~~~~~-----~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  281 (397)
                      ....    ..+++.++..  ...+..++.+.     ....++.+++..+ .++++++.++..++++++.+.|++ ++++.
T Consensus       346 ~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~  424 (515)
T 2jis_A          346 LLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKK-REGFE  424 (515)
T ss_dssp             HHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEE
T ss_pred             HHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEE
Confidence            2222    1222222111  00011111100     0122333334433 457888999999999999999999 88999


Q ss_pred             EeCCCCCCCCceEEEEec-C-C----ChHHHHHH-------hCCcEecccCccCCCCCChhhHHHhhCCCc-cccCceEE
Q psy8850         282 INGDMNNRIPHNLNISFN-F-I----EGESLLMA-------IKDIAVSSGSACTSASLEPSYVLRALGCND-ELAHSSIR  347 (397)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~~-------l~~i~~~~g~~~~~~~~~~~~~~~~~g~~~-~~~~~~iR  347 (397)
                      ++.++.   ...+.|.+. . .    +..++...       +.+.....|..+..             ... ....+++|
T Consensus       425 ~~~~~~---~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~-------------~~~~~~~~~~lR  488 (515)
T 2jis_A          425 LVMEPE---FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIG-------------YQPHGTRGNFFR  488 (515)
T ss_dssp             ESSCCS---SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEE-------------EEEETTEEEEEE
T ss_pred             EeCCCC---eeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-------------EEEECCceEEEE
Confidence            887533   234455442 1 0    11121111       11112222221100             000 01136899


Q ss_pred             Eee-CCCCCHHHHHHHHHHHHHHHHH
Q psy8850         348 FTI-GRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       348 i~~-~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +++ +.+++++||+++++.|++++++
T Consensus       489 is~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          489 VVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999 7889999999999999987643

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=100.00  E-value=1.5e-32  Score=259.25  Aligned_cols=318  Identities=12%  Similarity=0.040  Sum_probs=233.9

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCC--C-CcEEEeCChhHHHHHHHHHhHhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YAD--P-REIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~--~-~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +++.+.+++.+.+.....   . .|..    .....++++.+++++    |.+  + ++|++++|+++|+.+++.++.  
T Consensus        61 ~~~~v~~a~~~~~~~~~~---~-~y~~----~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~--  130 (404)
T 2o1b_A           61 TPQGIIDHFQKALTIPEN---Q-KYGA----FHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI--  130 (404)
T ss_dssp             CCHHHHHHHHHHTTCHHH---H-SCCC----TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHhCCCC---C-CCCC----CCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc--
Confidence            578999999888743100   0 1111    112345666666665    864  3 689999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE  157 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~  157 (397)
                        ++||+|++..++|+++...+...   |.+++.+|.+. +..+|+++|++++++++++|++++++||||.++|   +++
T Consensus       131 --~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~  205 (404)
T 2o1b_A          131 --NPGDYVLLPDPGYTDYLAGVLLA---DGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDE  205 (404)
T ss_dssp             --CTTCEEEEEESCCSSHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHH
T ss_pred             --CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHH
Confidence              78999999999999998887766   99999999875 3358999999999888999999999999999997   678


Q ss_pred             HHHHHHhcCcEEEEecccccCcc---ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKI---DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE  228 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~  228 (397)
                      |+++|++||+++|+|++|+.+..   +.++..    .+.++++.|+||.+|+.|  +|+++++++..+.+......    
T Consensus       206 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~----  281 (404)
T 2o1b_A          206 AIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTH----  281 (404)
T ss_dssp             HHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHH----
T ss_pred             HHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHHHhh----
Confidence            99999999999999999985331   222222    256799999999666444  69999887655554432211    


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLL  307 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  307 (397)
                         ...+.+.....++.++++...+++++..++++++++++.+.|++ + ++.+..+..   +.++++.++ +.+..++.
T Consensus       282 ---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~l~  353 (404)
T 2o1b_A          282 ---TNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAK-A-DLPFVHAKG---GIYVWLETPPGYDSEQFE  353 (404)
T ss_dssp             ---HCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEECCCB---SSEEEEECCTTCCHHHHH
T ss_pred             ---ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-c-CCeecCCCc---ceEEEEeCCCCCCHHHHH
Confidence               11245555666666677654456788889999999999999998 5 666654432   344667776 34566777


Q ss_pred             HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.|.   ||.+.+|..|..                 ...+++||+++.  +++++++++++|++++++
T Consensus       354 ~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          354 QFLVQEKSILVAPGKPFGE-----------------NGNRYVRISLAL--DDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             HHHHHHHCEECEESGGGCG-----------------GGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred             HHHHHHCCEEEeCchhhCc-----------------CCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            7642   999998866542                 123789999996  688999999999887654

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=100.00  E-value=1.8e-32  Score=259.06  Aligned_cols=322  Identities=13%  Similarity=0.070  Sum_probs=235.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++ +.+....    . .|...    ....++++.++++++      ++++++++++|+++|+.+++.++.  
T Consensus        56 ~~~~~v~~a~-~~l~~~~----~-~y~~~----~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--  123 (409)
T 2gb3_A           56 KTPEVFFERI-YENKPEV----V-YYSHS----AGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA--  123 (409)
T ss_dssp             CCCTHHHHHH-HHTCCSS----C-CCCCT----TCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHH-HHHhcCC----C-CCCCC----CCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC--
Confidence            4578899999 7775311    0 12111    123556666666653      456789999999999999999886  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||+|+++.++|+++...+...   |.+++.+|.++  ++.+ +++|++++++++++|++++++||||.++|   ++
T Consensus       124 --~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~  197 (409)
T 2gb3_A          124 --NPGDEILVLEPFYANYNAFAKIA---GVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMR  197 (409)
T ss_dssp             --CTTCEEEEEESCCTHHHHHHHHH---TCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             --CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHH
Confidence              78999999999999999887777   99999999875  3344 89999999889999999999999999876   78


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---ccc-cCc-ccccEEEeccccccCCCC--ceEEEEec-CCCCccccccccCCcc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---DIN-IQN-YKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGGHE  228 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~~~-~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~  228 (397)
                      +|+++|++||+++|+|++|+.+..   ... +.. .+.|+++.|+||.+|+.|  +|++++++ +..+.+......    
T Consensus       198 ~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~----  273 (409)
T 2gb3_A          198 YLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQG----  273 (409)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhc----
Confidence            899999999999999999985432   112 222 257999999999767556  79999887 555544433221    


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEE-eCCCCCCCCceEEEEecCCChHHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI-NGDMNNRIPHNLNISFNFIEGESLL  307 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  307 (397)
                        . . +.+.....++.++++...++++++.+++.++++++.+.|++ + ++.+ ..+..   +.++++.+++.+..++.
T Consensus       274 --~-~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~---~~~~~~~~~~~~~~~l~  344 (409)
T 2gb3_A          274 --R-L-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-H-GLKRFTKPSG---AFYITAELPVEDAEEFA  344 (409)
T ss_dssp             --S-C-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCBCCCSB---SSEEEEECSSSCHHHHH
T ss_pred             --c-C-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-c-CceeeeCCCe---eEEEEEEeCCCCHHHHH
Confidence              1 1 34555555666677543456788889999999999999998 5 6655 33322   34555566655667777


Q ss_pred             HHh--C------CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         308 MAI--K------DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       308 ~~l--~------~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ..|  +      ||.+.+|..|...              .....+++||+++  ++++++++++++|+++++++++-
T Consensus       345 ~~l~~~~~~~~~gi~v~~g~~f~~~--------------~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~~~  405 (409)
T 2gb3_A          345 RWMLTDFNMDGETTMVAPLRGFYLT--------------PGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFCSS  405 (409)
T ss_dssp             HHHHHSCCBTTEEEECEEGGGGCSS--------------TTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhccccccCcEEEeCchHhCCC--------------CCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhhhc
Confidence            666  3      7888887655430              0112488999998  68999999999999999887653

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=1.6e-31  Score=245.98  Aligned_cols=302  Identities=16%  Similarity=0.140  Sum_probs=227.0

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      +.++++.+++++.+.+.....      |.     .....++++.+++++++++++|++|+|+++++.+++.++      +
T Consensus        27 ~~~~~~~v~~a~~~~~~~~~~------y~-----~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~------~   89 (337)
T 3p1t_A           27 PEAVEPRVQAAIAAAAARINR------YP-----FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF------S   89 (337)
T ss_dssp             CSCCCHHHHHHHHHHGGGTTS------CC-----TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS------T
T ss_pred             CCCCCHHHHHHHHHhhhhhcc------CC-----CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc------C
Confidence            346789999999998765322      21     136788999999999999889999999999999999876      6


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK  165 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~  165 (397)
                      ||+|+++.++|+++...+...   |.+++.+|.++++.+|+++++++  .+++++++++++||||.++|++++.++|+++
T Consensus        90 gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~  164 (337)
T 3p1t_A           90 SMRFVTAWPGFDGYRARIAVS---GLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELDQLRQRA  164 (337)
T ss_dssp             TSEEEEESSSCSHHHHHHTTS---CCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHHHHHHHC
T ss_pred             CCeEEEeCCCcHHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC
Confidence            799999999999988766655   99999999988888999999876  5689999999999999999999999999999


Q ss_pred             CcEEEEecccccC--ccccccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHH
Q psy8850         166 GVIFHCDAAQAVG--KIDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQI  241 (397)
Q Consensus       166 gi~livD~a~~~~--~~~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (397)
                      ++ +|+|++|+..  .........+.++++.|+||.+|+.|  +|+++++++....+....         ...+.+...+
T Consensus       165 ~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~---------~~~~~~~~~~  234 (337)
T 3p1t_A          165 GK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ---------WFCNVGTLDL  234 (337)
T ss_dssp             SE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS---------CTTCSCHHHH
T ss_pred             Cc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc---------CCCCCCHHHH
Confidence            97 5669998721  11222222357899999999666444  688888766554443321         1234555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccC
Q psy8850         242 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGS  319 (397)
Q Consensus       242 ~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~  319 (397)
                      .++.++++.. +.+.+..+++.++++++.+.|++ + ++.+..+.    ..++++..+  +..++.+.|.  ||.+.+|.
T Consensus       235 ~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~  305 (337)
T 3p1t_A          235 HALEAALDND-RAREAHIAKTLAQRRRVADALRG-L-GYRVASSE----ANFVLVENA--AGERTLRFLRERGIQVKDAG  305 (337)
T ss_dssp             HHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCCBCCCS----SSEEEEECT--TTHHHHHHHHHTTEECEEGG
T ss_pred             HHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHH-C-cCEECCCC----CeEEEEEcC--CHHHHHHHHHHCCeEEEECc
Confidence            6665666542 23566677778888999999998 5 66554332    344445443  3456666665  99999987


Q ss_pred             ccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .|..                   .+++||+++   +++++++++++|+++.
T Consensus       306 ~~~~-------------------~~~iRis~~---~~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          306 QFGL-------------------HHHIRISIG---REEDNDRLLAALAEYS  334 (337)
T ss_dssp             GGTC-------------------CSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred             cCCC-------------------CCeEEEecC---CHHHHHHHHHHHHHHh
Confidence            6543                   379999997   6999999999998765

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=100.00  E-value=1.6e-31  Score=248.39  Aligned_cols=305  Identities=20%  Similarity=0.166  Sum_probs=232.0

Q ss_pred             CCCCHHHHHHHHHHHhh----ccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           7 TPIDPRVVDKMIPYLRV----QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      .++|+.+++++.+.+..    ...++..           ...++++++++++|+++++|++++|+++|+.+++.++.   
T Consensus        38 ~~~~~~v~~a~~~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~---  103 (360)
T 3hdo_A           38 YPPSPEVVKAILEELGPDGAALRIYPSA-----------SSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFA---  103 (360)
T ss_dssp             SCCCHHHHHHHHHHHTTTCGGGGSCCCS-----------SCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHHHHHhcccchhhcCCCC-----------chHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHh---
Confidence            35789999999998875    2222221           23688999999999988899999999999999999887   


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHH
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC  162 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~  162 (397)
                       ++||+|+++.++|+++...+...   |.+++.+|.++++.+  +++++.+  +++++++++++||||.++|++++.++|
T Consensus       104 -~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~~~~l~~l~  175 (360)
T 3hdo_A          104 -AEGEEIGYVHPSYSYYGTLAEVQ---GARVRTFGLTGDFRI--AGFPERY--EGKVFFLTTPNAPLGPSFPLEYIDELA  175 (360)
T ss_dssp             -CTTCEEEEESSSCTHHHHHHHHH---TCEEEEECBCTTSSB--TTCCSSB--CSSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             -CCCCEEEEcCCChHHHHHHHHHC---CCEEEEeeCCCCCCH--HHHHhhc--CCCEEEEeCCCCCCCCCcCHHHHHHHH
Confidence             78999999999999999888877   999999999876544  4444333  467999999999999999999999999


Q ss_pred             HhcCcEEEEecccccCc--ccccc-CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850         163 RSKGVIFHCDAAQAVGK--IDINI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~--~~~~~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
                      +++|+++|+|++|+...  ..... ...+.++++.|++|.+|+.|  +|+++++++..+.+.....         ..+.+
T Consensus       176 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------~~~~~  246 (360)
T 3hdo_A          176 RRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD---------HYNLD  246 (360)
T ss_dssp             HHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC---------SCCSC
T ss_pred             HHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC---------CCCCC
Confidence            99999999999998421  11111 12256688999999655334  7888887655444433221         12456


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV  315 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~  315 (397)
                      .....++.++++. .+++++..+++.++++++.+.|++ + ++.+..+.    +.++++.+++.+..++.+.|.  ||.+
T Consensus       247 ~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~gi~v  319 (360)
T 3hdo_A          247 RLAQAACVAALRD-QAYLSECCRRIRETREWFTTELRS-I-GYDVIPSQ----GNYLFATPPDRDGKRVYDGLYARKVLV  319 (360)
T ss_dssp             HHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCCS----SSEEEEECTTCCHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEcCCC----ccEEEEECCCCCHHHHHHHHHHCCEEE
Confidence            6666666677775 446788899999999999999998 5 77665332    445667777667788888776  8888


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      .++..  +                 ...+++||+++   +++++|+++++|+++.+
T Consensus       320 ~~~~~--~-----------------~~~~~iRis~~---~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          320 RHFSD--P-----------------LLAHGMRISIG---TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             BCCCS--T-----------------TTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             EECCC--C-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence            87642  1                 12388999997   79999999999887653

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=100.00  E-value=8.9e-32  Score=252.24  Aligned_cols=316  Identities=15%  Similarity=0.146  Sum_probs=236.1

Q ss_pred             CCCHHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      ++++.+++++.+.+.... +++.+ .+..  ...+...++++.+++++|++  +.+++++|++|+..++.++.    ++|
T Consensus        53 ~~~~~v~~a~~~~~~~~~~~~~~~-~~~~--g~~~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~~~~~~----~~g  123 (384)
T 1bs0_A           53 SHHPQIIRAWQQGAEQFGIGSGGS-GHVS--GYSVVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAMM----AKE  123 (384)
T ss_dssp             GGCHHHHHHHHHHHHHHCSCCCSB-TTTT--CCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTT
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCc-Cccc--CChHHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC----CCC
Confidence            478999999999987622 11111 1221  22357889999999999986  56666677999999998876    789


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC---ceEEEEecccCcccccccHHHHHHHHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD---TILVSVMLVNNEIGVIQPILEIGELCR  163 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~~~tG~~~~l~~i~~l~~  163 (397)
                      ++|+++.++|+++...+...   |.+++.+|.     +|++++++++++.   +++|++++++||||.+.|+++|.++|+
T Consensus       124 d~v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~  195 (384)
T 1bs0_A          124 DRIAADRLSHASLLEAASLS---PSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ  195 (384)
T ss_dssp             CEEEEETTCCHHHHHHHHTS---SSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred             cEEEEcccccHHHHHHHHHc---CCCEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHH
Confidence            99999999999998877665   999999884     4899999998763   789999999999999999999999999


Q ss_pred             hcCcEEEEecccccCccc------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCcccccc-CCCC
Q psy8850         164 SKGVIFHCDAAQAVGKID------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR-SGTL  236 (397)
Q Consensus       164 ~~gi~livD~a~~~~~~~------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  236 (397)
                      +||+++|+|++|+.+...      .+....++|+++.|+||.+|+.| |+++++++..+.+......      +. .++.
T Consensus       196 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~~------~~~~~~~  268 (384)
T 1bs0_A          196 QHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFARH------LIYSTSM  268 (384)
T ss_dssp             HTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCHH------HHSSBCC
T ss_pred             HcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC-cEEEeCHHHHHHHHHhchh------hhcCCCC
Confidence            999999999999865421      11111357999999999778877 9999987655444332111      11 1245


Q ss_pred             chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC--C
Q psy8850         237 ATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK--D  312 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~  312 (397)
                      +...+.++.++++.+.+ +.+++.+++.++++++.+.|++ + ++.+... .   +.++++.++. .+..++.+.|.  |
T Consensus       269 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---~~~~~~~~~~~~~~~~l~~~l~~~g  342 (384)
T 1bs0_A          269 PPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD-L-PFTLADS-C---SAIQPLIVGDNSRALQLAEKLRQQG  342 (384)
T ss_dssp             CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-S-SCEECSC-C---SSBCCEEEESHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh-c-CCcccCC-C---CCEEEEEeCCHHHHHHHHHHHHHCC
Confidence            66667777778887654 5678899999999999999998 5 6666532 2   3455566653 34566777765  8


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      |.+.++..+..                +...+++||+++..++++++++++++|+++
T Consensus       343 i~v~~~~~~~~----------------~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          343 CWVTAIRPPTV----------------PAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             EECCEECTTSS----------------CTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             cEEEeecCCCC----------------CCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            99888754321                112478999999888999999999999864

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=100.00  E-value=4.5e-32  Score=259.49  Aligned_cols=330  Identities=14%  Similarity=0.079  Sum_probs=234.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCC-------CC--cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChh-HH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPAS-------RN--HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGAT-ES   70 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t-~a   70 (397)
                      ||++++++.|+.|.+++.+.....+.++..       ..  +..+....+..+++++++++++|++++ +++|+|+| .+
T Consensus        84 ld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a  162 (456)
T 2z67_A           84 PKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH-AIATPISTGMS  162 (456)
T ss_dssp             TTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHH
T ss_pred             ccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHH
Confidence            689999999999999988744221222211       00  111223556778899999999999876 99999999 56


Q ss_pred             HHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc---CCCCCCCHHHHHHHh-c----CCceEEEE
Q psy8850          71 NNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP---KNNGLITLSQLEEKI-C----SDTILVSV  142 (397)
Q Consensus        71 ~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~---~~~~~~d~~~l~~~i-~----~~~~~v~~  142 (397)
                      +.+++.++...  .++++|+++.++|+++...+...   |++++.++.   ++++.+|+++|++++ +    .++.+|++
T Consensus       163 ~~~al~~~~~~--~~~~~vi~~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~  237 (456)
T 2z67_A          163 ISLCLSAARKK--YGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS  237 (456)
T ss_dssp             HHHHHHHHHHH--HCCCEEEEECCCCHHHHHHHHHT---TCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHh--cCCCEEEEECCCcHHHHHHHHHc---CCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEE
Confidence            66566655421  16788999999999988777665   999999887   667889999999999 5    36778888


Q ss_pred             ecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc---ccccCcc--cccEEEecccc-ccCCCCceEEEEe-cCCC
Q psy8850         143 MLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI---DINIQNY--KVDLMSFSAHK-IYGPKGIGALYIR-RNPR  215 (397)
Q Consensus       143 ~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~---~~~~~~~--~~d~~~~s~~K-~~g~~g~g~~~~~-~~~~  215 (397)
                      +.++|+||.+.|+++|.++|+++|+++|+|++|+....   +.+...+  ++|++++|+|| +++|.|+|+++++ ++..
T Consensus       238 ~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~  317 (456)
T 2z67_A          238 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI  317 (456)
T ss_dssp             ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHH
T ss_pred             eCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHH
Confidence            99999999999999999999999999999998874433   3333223  79999999999 6788899999995 3344


Q ss_pred             CccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCCCCC
Q psy8850         216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIP  291 (397)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~  291 (397)
                      ..+.+...++          .+....+++.+++..+ .++++++.++..++++++.+.|++ ++   ++.+..++     
T Consensus       318 ~~l~~~~~g~----------~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~v~~~~-----  381 (456)
T 2z67_A          318 KEISLSYPGR----------ASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND-LSKKTGGKFLDVE-----  381 (456)
T ss_dssp             HHHHTTSCSC----------BCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSCCBCCCC-----
T ss_pred             hhcCcCCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccCCEecCCC-----
Confidence            4443333321          1111244454555554 457888999999999999999998 64   65555433     


Q ss_pred             ceEEEEe--cCCChHHHHHHhC--Cc---Eec------ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         292 HNLNISF--NFIEGESLLMAIK--DI---AVS------SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       292 ~~~~~~~--~~~~~~~~~~~l~--~i---~~~------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      .++.+.+  ++. ..++...|.  ++   .+.      .|.+|..                 ...+++|++++.++++++
T Consensus       382 ~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~-----------------~~~~~vr~s~~~~~t~ee  443 (456)
T 2z67_A          382 SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT-----------------YTHDYIVMNAAIGVRTED  443 (456)
T ss_dssp             CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTTCHHHHTCSSC-----------------CSCCEEEEECCTTCCHHH
T ss_pred             CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeecCccccccccc-----------------cCcchhhhhhhcCCCHHH
Confidence            3344555  332 356766665  43   222      0111111                 124789999999899999


Q ss_pred             HHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKV  370 (397)
Q Consensus       359 i~~~~~~l~~~~  370 (397)
                      ||+++++|++++
T Consensus       444 id~~l~~L~~~~  455 (456)
T 2z67_A          444 IVNSVSKLEKIL  455 (456)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=100.00  E-value=3.4e-32  Score=257.05  Aligned_cols=324  Identities=17%  Similarity=0.170  Sum_probs=234.6

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      +++.+.+++.+.+....   .. ..   |.......++++.+++++    |  +++++|++|+|+++|+.+++.++.   
T Consensus        50 ~~~~v~~a~~~~~~~~~---~~-~~---y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---  119 (407)
T 2zc0_A           50 PRAVLGEIAKEVLEKEP---KS-VM---YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI---  119 (407)
T ss_dssp             CHHHHHHHHHHHHHHCG---GG-GS---CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHhhcc---cc-cc---CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc---
Confidence            56889999998886521   00 11   111123456677777776    8  466789999999999999999987   


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----C--CceEE-EEecccCcccccccH
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----S--DTILV-SVMLVNNEIGVIQPI  155 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~--~~~~v-~~~~~~~~tG~~~~l  155 (397)
                       ++|++|++..++|+++...+...   |.+++.+|.++++ +|+++|+++++    +  ++++| ++++++||||.+.|.
T Consensus       120 -~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~  194 (407)
T 2zc0_A          120 -DPGDVVITENPSYINTLLAFEQL---GAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSM  194 (407)
T ss_dssp             -CTTCEEEEEESCCHHHHHHHHTT---TCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCH
T ss_pred             -CCCCEEEEeCCChHHHHHHHHHc---CCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCH
Confidence             78999999999999988776655   9999999987665 89999999998    6  78887 578999999999997


Q ss_pred             H---HHHHHHHhcCcEEEEecccccCcc----ccccCcc---cccEEEeccccccCCC-CceEEEEecCCCCcccccccc
Q psy8850         156 L---EIGELCRSKGVIFHCDAAQAVGKI----DINIQNY---KVDLMSFSAHKIYGPK-GIGALYIRRNPRTRIEAQIHG  224 (397)
Q Consensus       156 ~---~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~---~~d~~~~s~~K~~g~~-g~g~~~~~~~~~~~~~~~~~~  224 (397)
                      +   +|+++|++||+++|+|++|+.+..    ..++..+   +.++++.|++|.+|+. .+|+++++++..+.+......
T Consensus       195 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~  274 (407)
T 2zc0_A          195 ERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQP  274 (407)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCHHHHHHHHHHHHh
Confidence            6   899999999999999999985432    1122222   4568899999966631 379999886555444433221


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRLA--R-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F  300 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~~--~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~  300 (397)
                            ... ..+.....++.++++..  . +++++..+++.++++++.+.|++.++++.+..+..   +.++++.++ +
T Consensus       275 ------~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~  344 (407)
T 2zc0_A          275 ------IDF-CAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIA---GMFVMFFLPEG  344 (407)
T ss_dssp             ------TTS-SSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSB---SSEEEEECSTT
T ss_pred             ------hcC-CCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCC---cEEEEEEcCCC
Confidence                  111 22444444555566542  3 45677888889999999999987446665544322   446677775 3


Q ss_pred             CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .+..++.+.|.   ||.+.+|..|....               ...+++||+++.. +++++++++++|+++++++
T Consensus       345 ~~~~~l~~~l~~~~gi~v~~g~~~~~~~---------------~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~  404 (407)
T 2zc0_A          345 ADGISFANELMEREGVVVVPGKPFYTDE---------------SGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK  404 (407)
T ss_dssp             CCHHHHHHHHHHHTCEECBCSGGGCSSS---------------CCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCeEEECchhccCCC---------------CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence            46777877774   89999987665310               1237899999975 8999999999999998765

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=100.00  E-value=5.8e-31  Score=245.39  Aligned_cols=307  Identities=13%  Similarity=0.063  Sum_probs=230.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHH------hCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL------IYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++++.+.+++.+.+...... .. .|....    . .++++.++++      +++++++|++++|+++|+++++.++.  
T Consensus        43 ~~~~~v~~a~~~~~~~~~~~-~~-~y~~~~----~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~--  113 (369)
T 3cq5_A           43 PPSEALVADLVATVDKIATE-LN-RYPERD----A-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG--  113 (369)
T ss_dssp             CCCHHHHHHHHHHHHHHGGG-TT-SCCCTT----C-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHHhcccc-cc-cCCCcc----H-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc--
Confidence            46899999999988652100 01 121111    1 3566666666      45567789999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                        ++||+|+++.++|+++...+...   |.+++.+|.++++.+|++++++++++ ++++|++++++||||.+.|.+++.+
T Consensus       114 --~~gd~Vl~~~~~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~  188 (369)
T 3cq5_A          114 --GPGRTALGFQPSYSMHPILAKGT---HTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVER  188 (369)
T ss_dssp             --STTCEEEEEESSCTHHHHHHHHT---TCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred             --CCCCEEEEcCCChHHHHHHHHHc---CCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence              78999999999999998877666   99999999887778999999999987 8999999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccc---ccc-Cccc-ccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccC
Q psy8850         161 LCRSKGVIFHCDAAQAVGKID---INI-QNYK-VDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS  233 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~---~~~-~~~~-~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (397)
                      +|+.+++++|+|++|+.+...   .+. ...+ .++++.|+||.+|+.|  +|+++++++..+.+.....         .
T Consensus       189 l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~---------~  259 (369)
T 3cq5_A          189 IINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRL---------P  259 (369)
T ss_dssp             HHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSC---------T
T ss_pred             HHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCC---------C
Confidence            999999999999999855432   222 2234 6799999999666445  6999998655444433221         1


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--
Q psy8850         234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--  311 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  311 (397)
                      .+.+.....+..++++. .+++++..+++.++++++.+.|++  .++.+... .   +.++++.++ .+..++.+.|.  
T Consensus       260 ~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~-~---~~~~~~~~~-~~~~~l~~~l~~~  331 (369)
T 3cq5_A          260 YHLSALSQAAAIVALRH-SADTLGTVEKLSVERVRVAARLEE--LGYAVVPS-E---SNFVFFGDF-SDQHAAWQAFLDR  331 (369)
T ss_dssp             TCSCHHHHHHHHHHHHT-HHHHHTHHHHHHHHHHHHHHHHHH--HTCEEECC-S---SSEEEEECC-SSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh--CCCEECCC-C---CeEEEEECC-CCHHHHHHHHHHC
Confidence            23555556666566764 345778889999999999999988  36766632 2   345666665 45667777775  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ||.+.+|.  .                    ++++||+++   +++++++++++|++++
T Consensus       332 gi~v~~~~--~--------------------~~~iRis~~---~~~~i~~~~~~l~~~~  365 (369)
T 3cq5_A          332 GVLIRDVG--I--------------------AGHLRTTIG---VPEENDAFLDAAAEII  365 (369)
T ss_dssp             TEECBCCS--C--------------------TTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECC--C--------------------CCeEEEEeC---CHHHHHHHHHHHHHHH
Confidence            88887761  0                    278999997   7899999999999875

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=100.00  E-value=2.5e-32  Score=259.28  Aligned_cols=329  Identities=15%  Similarity=0.110  Sum_probs=235.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCC-CcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADP-REIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~-~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.+++++.+.+....  ... .|.......+....+.+.+.+.+|  +++ ++|++|+|+++|+.+++.++.    +
T Consensus        41 ~~~~~v~~a~~~~~~~~~--~~~-~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~----~  113 (422)
T 3fvs_A           41 PPPDFAVEAFQHAVSGDF--MLN-QYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV----D  113 (422)
T ss_dssp             CCCHHHHHHHHHHHHSCG--GGG-SCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC----C
T ss_pred             CCCHHHHHHHHHHHhCCC--ccC-CCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc----C
Confidence            478999999999887521  000 121111123344445555555555  445 589999999999999999887    7


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC----C--------CCCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN----N--------GLITLSQLEEKICSDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~----~--------~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~  152 (397)
                      +|++|++..++|+++...+...   |.+++.+|.+.    +        +.+|++++++++++++++|++++++||||.+
T Consensus       114 ~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~  190 (422)
T 3fvs_A          114 EGDEVIIIEPFFDCYEPMTMMA---GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKV  190 (422)
T ss_dssp             TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCC
T ss_pred             CCCEEEEcCCCchhhHHHHHHc---CCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcC
Confidence            8999999999999998877766   99999999875    3        3689999999999999999999999999999


Q ss_pred             cc---HHHHHHHHHhcCcEEEEecccccCc----cccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCccc
Q psy8850         153 QP---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIE  219 (397)
Q Consensus       153 ~~---l~~i~~l~~~~gi~livD~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~  219 (397)
                      .|   +++|+++|++||+++|+|++|+...    .+.++..    .+.++++.|++|.+|+.|  +|+++++++....+.
T Consensus       191 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~  270 (422)
T 3fvs_A          191 FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLR  270 (422)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHH
Confidence            95   7899999999999999999998422    1222221    256688999999666444  799888766554443


Q ss_pred             cccccCCccccccCCCCchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCc
Q psy8850         220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH  292 (397)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  292 (397)
                      .....       ...+.+.....++.++++.       ..++++++.+++.++++++.+.|++ + ++.+..+..   +.
T Consensus       271 ~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~  338 (422)
T 3fvs_A          271 TVHQN-------SVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS-V-GLKPIIPQG---SY  338 (422)
T ss_dssp             HHHHT-------TTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHT-T-TCEEEBCSB---SS
T ss_pred             HHHhh-------ccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---ee
Confidence            32211       1224455666666667764       2345788899999999999999998 4 777665533   44


Q ss_pred             eEEEEecCC----C----------hHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850         293 NLNISFNFI----E----------GESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT  355 (397)
Q Consensus       293 ~~~~~~~~~----~----------~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  355 (397)
                      ++++.++..    +          ..++...+ .  ||.+.+|..|...      .      ....+.+++||+++.  +
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~------~------~~~~~~~~iRis~~~--~  404 (422)
T 3fvs_A          339 FLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV------P------HQKHFDHYIRFCFVK--D  404 (422)
T ss_dssp             EEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCH------H------HHTTSCSEEEEECCC--C
T ss_pred             EEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCC------c------CCCCCCCeEEEEecC--C
Confidence            556665421    1          33565553 2  9999999877540      0      011235899999986  9


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy8850         356 EKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~~~  372 (397)
                      ++++++++++|++++++
T Consensus       405 ~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          405 EATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999988754

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=100.00  E-value=4.2e-31  Score=248.70  Aligned_cols=323  Identities=11%  Similarity=0.001  Sum_probs=236.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC---CCC-cEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA---DPR-EIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~-~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      ++|+.+++++.+.+.....++..      ....+....+.+.+.+.+|.   +++ +|++|+|+++|+.+++.++.    
T Consensus        43 ~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~----  112 (396)
T 3jtx_A           43 PTPKVITDALTASLHELEKYPLT------AGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL----  112 (396)
T ss_dssp             CCCHHHHHHHHHTGGGGGSCCCT------TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHhhhccCCCCC------CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh----
Confidence            46889999999888654433322      11234555566666666674   477 99999999999999999887    


Q ss_pred             cCC-----CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC-CCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850          84 KRG-----KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG-LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        84 ~~g-----~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~-~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                      ++|     ++|+++.++|+++...+...   |.+++.+|.++++ .+|++++++++++++++|++++++||||.++|.++
T Consensus       113 ~~g~~~~~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~  189 (396)
T 3jtx_A          113 NPVSDGIKPAIVSPNPFYQIYEGATLLG---GGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDG  189 (396)
T ss_dssp             CC---CCCCEEEEEESCCHHHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHH
T ss_pred             CCCCccCCCEEEEcCCCcHhHHHHHHHc---CCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHH
Confidence            675     79999999999998877766   9999999996544 68999999999989999999999999999998654


Q ss_pred             ---HHHHHHhcCcEEEEecccccCcc----ccccC--------cccccEEEeccccccCCCC--ceEEEEecCCCCcccc
Q psy8850         158 ---IGELCRSKGVIFHCDAAQAVGKI----DINIQ--------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEA  220 (397)
Q Consensus       158 ---i~~l~~~~gi~livD~a~~~~~~----~~~~~--------~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~  220 (397)
                         |+++|++||+++|+|++|+....    +....        ..+.++++.|++|.+|..|  +|+++.+++....+..
T Consensus       190 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~  269 (396)
T 3jtx_A          190 WKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLL  269 (396)
T ss_dssp             HHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHH
Confidence               89999999999999999984321    21110        2467899999999555434  7888887655554443


Q ss_pred             ccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC
Q psy8850         221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF  300 (397)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (397)
                      ...       ....+.+.....++.++++. .+++.+..+++.++++++.+.|++ .  +.+..+..   +.++++.++.
T Consensus       270 ~~~-------~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~--~~~~~~~~---~~~~~~~~~~  335 (396)
T 3jtx_A          270 YRT-------YHGSAMSIPVQRASIAAWDD-EQHVIDNRRLYQEKFERVIPILQQ-V--FDVKLPDA---SFYIWLKVPD  335 (396)
T ss_dssp             HHH-------HHTCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTT-T--SCCCCCSS---SSEEEEECTT
T ss_pred             HHh-------hcccCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh-c--CCccCCCe---eEEEEEECCC
Confidence            221       11234566666666666653 346788889999999999999987 3  22232222   4567778876


Q ss_pred             CChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         301 IEGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       301 ~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .+..++...| +  ||.+.+|..|.....           ......+++||+++.  +++++++++++|++++
T Consensus       336 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~-----------~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          336 GDDLAFARNLWQKAAIQVLPGRFLARDTE-----------QGNPGEGYVRIALVA--DVATCVKAAEDIVSLY  395 (396)
T ss_dssp             SCHHHHHHHHHHHHCEECEEGGGGCCCCT-----------TCCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHCCEEEeCChHhCCccc-----------ccCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence            6777888777 3  999999987765210           011235899999986  8999999999998764

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=100.00  E-value=5.2e-31  Score=245.25  Aligned_cols=311  Identities=14%  Similarity=0.086  Sum_probs=230.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .+++.+.+++.+.+.....      |..     ....++++.+++++++++++|++++|+++|+.+++.++      +|+
T Consensus        37 ~~~~~v~~a~~~~~~~~~~------y~~-----~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~------~gd   99 (364)
T 1lc5_A           37 GMPVSVKRALIDNLDCIER------YPD-----ADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL------KPR   99 (364)
T ss_dssp             CCCHHHHHHHHHTGGGGGS------CCC-----TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH------CCS
T ss_pred             CCCHHHHHHHHHHHHHhhc------CCC-----CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc------CCC
Confidence            3678999999988754221      111     13578999999999998889999999999999999876      348


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCC-HHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT-LSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCR  163 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d-~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~  163 (397)
                      +|++..++|+++...+...   |.+++.+|.+....++ ++++.+.+++++++|++++++||||.++|   +++|+++|+
T Consensus       100 ~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~  176 (364)
T 1lc5_A          100 RAMIVTPGFAEYGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCK  176 (364)
T ss_dssp             EEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred             eEEEeCCCcHHHHHHHHHc---CCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhh
Confidence            9999999999998877766   9999999987522234 57677777778999999999999999999   789999999


Q ss_pred             hcCcEEEEecccccCcc----cccc-CcccccEEEeccccccCCCC--ceEEE-EecCCCCccccccccCCccccccCCC
Q psy8850         164 SKGVIFHCDAAQAVGKI----DINI-QNYKVDLMSFSAHKIYGPKG--IGALY-IRRNPRTRIEAQIHGGGHEYGLRSGT  235 (397)
Q Consensus       164 ~~gi~livD~a~~~~~~----~~~~-~~~~~d~~~~s~~K~~g~~g--~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (397)
                      +||+++|+|++|+.+..    ..+. ...+.++++.|+||.+|+.|  +|+++ .+++..+.+.....         ..+
T Consensus       177 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~---------~~~  247 (364)
T 1lc5_A          177 SLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM---------PWS  247 (364)
T ss_dssp             HHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC---------TTC
T ss_pred             hcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC---------CCC
Confidence            99999999999984332    1222 23467899999999666445  69998 77655544443221         124


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--Cc
Q psy8850         236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DI  313 (397)
Q Consensus       236 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i  313 (397)
                      .+.....++.++++. .+++++..+++.++++++.+.|++ ++++.+..+ .   +.++++.++. +..++.+.|.  ||
T Consensus       248 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~---g~~~~~~~~~-~~~~l~~~l~~~gi  320 (364)
T 1lc5_A          248 VNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQ-LPLLTVYPG-R---ANYLLLRCER-EDIDLQRRLLTQRI  320 (364)
T ss_dssp             SCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHT-STTEEECCC-S---SSEEEEEESC-TTCCHHHHHHTTTE
T ss_pred             CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhc-CCCCEECCC-C---CeEEEEECCC-cHHHHHHHHHHCCc
Confidence            555666666666665 346788889999999999999998 788876532 2   3455667663 2345666654  89


Q ss_pred             EecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      .+.+|..|..                 ...+++||+++   +.+++++++++|++++++++
T Consensus       321 ~v~~g~~~~~-----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~  361 (364)
T 1lc5_A          321 LIRSCANYPG-----------------LDSRYYRVAIR---SAAQNERLLAALRNVLTGIA  361 (364)
T ss_dssp             ECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred             EEeeCcccCC-----------------CCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence            9998865542                 12378999986   68999999999998876653

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=1.6e-31  Score=249.65  Aligned_cols=294  Identities=15%  Similarity=0.130  Sum_probs=225.9

Q ss_pred             HHHHHHHHHHHHh-CCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC
Q psy8850          42 AIEKARNEVAQLI-YADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN  120 (397)
Q Consensus        42 ~~~~~~~~la~~~-~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~  120 (397)
                      ...++++.+++++ +++++++++++|+++|+.+++.++.    ++||+|++..+.|+++...+...   |.+++.+|.+.
T Consensus        64 g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~  136 (375)
T 3op7_A           64 GSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI----EPGDHVISLYPTYQQLYDIPKSL---GAEVDLWQIEE  136 (375)
T ss_dssp             CCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESSCTHHHHHHHHT---TCEEEEEEEEG
T ss_pred             ChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeccc
Confidence            3578899999988 4777899999999999999999887    79999999999999998877766   99999999873


Q ss_pred             --CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCccc---cccCcccccEE
Q psy8850         121 --NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID---INIQNYKVDLM  192 (397)
Q Consensus       121 --~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~---~~~~~~~~d~~  192 (397)
                        ++.+|++++++++++++++|++++++||||.++|   +++|+++|++||+++|+|++|+.....   .-....+.+++
T Consensus       137 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~  216 (375)
T 3op7_A          137 ENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIA  216 (375)
T ss_dssp             GGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEE
T ss_pred             cCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEE
Confidence              4458999999999999999999999999999999   899999999999999999998853321   11112356688


Q ss_pred             EeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         193 SFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY  270 (397)
Q Consensus       193 ~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~  270 (397)
                      +.|++|.+|..|  +|+++++++..+.+......       ...+.+.....+...+++...+.+++..+++.++++++.
T Consensus       217 ~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  289 (375)
T 3op7_A          217 VNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDY-------TMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILD  289 (375)
T ss_dssp             EEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGG-------TTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeEChhhcCCcccceEEEEeCHHHHHHHHHHHhh-------hccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            999999665434  69998876655555433221       112334444455556677655567788888899999999


Q ss_pred             HHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceE
Q psy8850         271 NGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI  346 (397)
Q Consensus       271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i  346 (397)
                      +.|++ .+++.+..+..   +...++.++ ..+..++...+ .  ||.+.+|..|..                   .+++
T Consensus       290 ~~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~i  346 (375)
T 3op7_A          290 QWIEE-EPLVSYIRPAV---VSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER-------------------DGYV  346 (375)
T ss_dssp             HHHHH-CTTEEECCCSS---SSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEE
T ss_pred             HHHhh-CCCceEecCCC---eEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC-------------------CCeE
Confidence            99998 78887765543   333445554 34567777766 3  999998865542                   3889


Q ss_pred             EEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         347 RFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       347 Ri~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      |++++.  +.+++++++++|.+++++++
T Consensus       347 Ri~~~~--~~~~i~~~l~~l~~~l~~~~  372 (375)
T 3op7_A          347 RLGFAC--EQETLIKGLEKLSQFLRRFD  372 (375)
T ss_dssp             EECCCS--CHHHHHHHHHHHHHHHGGGC
T ss_pred             EEEecC--CHHHHHHHHHHHHHHHHHHh
Confidence            999885  56999999999999987653

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=100.00  E-value=2.3e-31  Score=250.61  Aligned_cols=335  Identities=12%  Similarity=0.076  Sum_probs=228.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      |+.++++..+++.+++..     +.++.. .+.++....+...++++++++++|.+  +.++++||++|+.+++.++.  
T Consensus        31 d~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~--  100 (398)
T 2rfv_A           31 IFQTSTFVFDSAEQGAAR-----FALEES-GYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC--  100 (398)
T ss_dssp             CCCCSBCCCSSHHHHHHH-----C------CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--
T ss_pred             CcCCCccccCCHHHHHHh-----hcCCCC-CCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--
Confidence            455555556666666552     222222 34444445678899999999999987  56677778899999999886  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                        ++|++|+++.++|+++...+..+ ...|.+++.+|.+     |++++++++++++++|++++++||||.+.|+++|.+
T Consensus       101 --~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~  173 (398)
T 2rfv_A          101 --QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAG  173 (398)
T ss_dssp             --CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred             --CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHH
Confidence              78999999999999998877432 3349999999875     899999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccccEEEeccccc-cCCCC--ceEEEEecCCCC-ccccccccCCccccccCCCC
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI-YGPKG--IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~-~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  236 (397)
                      +|++||+++|+|++|+.+..... ..+++|+++.|+||. .++.+  .|+++++++... .+.....+      ++.++.
T Consensus       174 l~~~~~~~li~De~~~~~~~~~~-~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~------~~~~~~  246 (398)
T 2rfv_A          174 IAHQQGALLVVDNTFMSPYCQQP-LQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD------ITGGCM  246 (398)
T ss_dssp             HHHHTTCEEEEECTTTCTTTCCG-GGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHH------TTCCCC
T ss_pred             HHHHcCCEEEEECCCcccccCCc-hhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHh------CCCCCC
Confidence            99999999999999997664322 234789999999995 45544  499999876544 33332221      112345


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEe--------------CCCCCCCCceEEEEecCC-
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN--------------GDMNNRIPHNLNISFNFI-  301 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-  301 (397)
                      +....++..++++.+.    ...++..++.+.+.+.|++ .+.+...              .+.....++++.+.+++. 
T Consensus       247 ~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~  321 (398)
T 2rfv_A          247 SPFNAWLTLRGVKTLG----IRMERHCENALKIARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL  321 (398)
T ss_dssp             CHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH
T ss_pred             CHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH
Confidence            5555555556665433    3344555666777777766 4332221              111112367777887642 


Q ss_pred             -ChHHHHHHhC--CcEecccCccCCC------C--CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         302 -EGESLLMAIK--DIAVSSGSACTSA------S--LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       302 -~~~~~~~~l~--~i~~~~g~~~~~~------~--~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                       +...+.+.+.  ++.+..|..++..      .  ..++..+...|+.    .+.|||+++..++++++++++++|+++
T Consensus       322 ~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          322 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGIT----DGLIRLSVGLEDPEDIINDLEHAIRKA  396 (398)
T ss_dssp             HHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCC----TTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence             2334444443  5666667543210      0  0022334455544    389999999999999999999988754

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=100.00  E-value=2.1e-31  Score=250.91  Aligned_cols=329  Identities=14%  Similarity=0.104  Sum_probs=234.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChhHHHHHHHHHhH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAIKGAA   79 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~-~~g~t~a~~~~l~~l~   79 (397)
                      ++++++++|+.+++++.++.....+     .....+...+...++++++++++|++. ++|++ |+|+|+|+++++.++.
T Consensus        44 ~~~~~~~~~~~v~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~  118 (398)
T 2fyf_A           44 FGSGPSKVRLEQLQTLTTTAAALFG-----TSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI  118 (398)
T ss_dssp             CCSSSCCCCHHHHHGGGTTTTTTTT-----SCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC
T ss_pred             ccCCCCCCCHHHHHHHhhcCCCccC-----cCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc
Confidence            4567778899999998763111000     111223445678899999999999973 58998 9999999999999986


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHhhC--CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLEND--GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~--g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                          ++| .++++...|.....  ......  |.+++.++.+. +..+..    .+++++++|++++++||||.+.|+++
T Consensus       119 ----~~g-v~~v~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~-g~~~~~----~i~~~~~~v~~~~~~nptG~~~~~~~  186 (398)
T 2fyf_A          119 ----DKR-SLHLTYGEFSAKFA--SAVSKNPFVGEPIIITSDP-GSAPEP----QTDPSVDVIAWAHNETSTGVAVAVRR  186 (398)
T ss_dssp             ----SSC-EEEEECSHHHHHHH--HHHHHCTTSCCCEEEECCT-TCCCCC----CCCTTCSEEEEESEETTTTEECCCCC
T ss_pred             ----CCC-eEEEeCCHHHHHHH--HHHHHhCCCCceEEEecCC-CCCCCc----cccCCCCEEEEeCcCCCcceecchHH
Confidence                565 33444444432211  122222  77888888873 333222    25678999999999999999999998


Q ss_pred             HHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCC-CceEEEEecCCCCcccc----------ccccCC
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPK-GIGALYIRRNPRTRIEA----------QIHGGG  226 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-g~g~~~~~~~~~~~~~~----------~~~~~~  226 (397)
                      |.++   +|+++|+|++|+.+..++++.  ++|++++|+||++|+. |+|+++++++....+..          ...++.
T Consensus       187 i~~~---~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  261 (398)
T 2fyf_A          187 PEGS---DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPI  261 (398)
T ss_dssp             CTTC---C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHH
T ss_pred             hhhh---cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHH
Confidence            8776   899999999999888776654  4899999999966655 68999998766554421          111110


Q ss_pred             cc----ccccCCCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCcEEEeC-CCCCCCCceEEEEec
Q psy8850         227 HE----YGLRSGTLATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFN  299 (397)
Q Consensus       227 ~~----~~~~~~~~~~~~~~~l~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~  299 (397)
                      ..    .....++++...++++.++++.+.+.  ++++.+++.++++++.+.|++ ++++.+.. .+....+.++++.++
T Consensus       262 ~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~  340 (398)
T 2fyf_A          262 AVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQE-RPYTTPFVTDPGLRSQVVGTIDFV  340 (398)
T ss_dssp             HHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH-STTEEESCCSGGGBCSSEEEEEEC
T ss_pred             HhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-cCCceeccCChhhcCCcEEEEECC
Confidence            00    12445678888888888899877653  889999999999999999998 77888774 221122347778775


Q ss_pred             -CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         300 -FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       300 -~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                       +.+..++.+.|.  ||.+.+|...                   .+++++||+++.+++++|+++++++|++++++
T Consensus       341 ~~~~~~~l~~~L~~~gI~v~~g~~~-------------------~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~  397 (398)
T 2fyf_A          341 DDVDAGTVAKILRANGIVDTEPYRK-------------------LGRNQLRVAMFPAVEPDDVSALTECVDWVVER  397 (398)
T ss_dssp             TTSCHHHHHHHHHHTTCBCCSCCTT-------------------TCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHCCcEEecCccc-------------------CCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence             456778888776  8888765110                   11378999999889999999999999988754

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=100.00  E-value=3.4e-31  Score=249.73  Aligned_cols=323  Identities=16%  Similarity=0.162  Sum_probs=233.7

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      ++|.+++++.+++.....+++.  +...+...+...++++.++++++.+ +++++++|++ ++..++..+...  .+|++
T Consensus        61 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~~-~~i~~~sG~~-a~~~~~~~l~~~--~~gd~  134 (401)
T 2bwn_A           61 QHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLHQKE-AALVFSSAYN-ANDATLSTLRVL--FPGLI  134 (401)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHTTCS-EEEEESCHHH-HHHHHHHHHHHH--STTCE
T ss_pred             CCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHhCCC-cEEEECCcHH-HHHHHHHHHhcC--CCCCE
Confidence            4678999999999874444332  2222333457889999999999975 5677766554 777777765321  47899


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      |+++.++|+++...+...   |.+++.+|.+     |+++++++++    +++++|++++++||||.+.|+++|.++|++
T Consensus       135 Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~  206 (401)
T 2bwn_A          135 IYSDSLNHASMIEGIKRN---AGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE  206 (401)
T ss_dssp             EEEETTCCHHHHHHHHHS---CCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred             EEECchhhHHHHHHHHHc---CCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHH
Confidence            999999999999887665   8999999875     7899998887    578999999999999999999999999999


Q ss_pred             cCcEEEEecccccCcccc------ccCcc--cccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         165 KGVIFHCDAAQAVGKIDI------NIQNY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~~------~~~~~--~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      ||+++|+|++|+.|....      .....  ..|+++.|++|.+|..| |+++.+++....+......    ..+..+++
T Consensus       207 ~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~~----~~~~~~~~  281 (401)
T 2bwn_A          207 FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GYIAASARMVDAVRSYAPG----FIFSTSLP  281 (401)
T ss_dssp             HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EEEEECHHHHHHHHHHCHH----HHTSBCCC
T ss_pred             cCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC-CEEecCHHHHHHHHHhCcC----ceecCCCC
Confidence            999999999999543210      11111  35899999999777656 8888875443333221110    11233444


Q ss_pred             chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHh-C--
Q psy8850         237 ATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI-K--  311 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~--  311 (397)
                      + ..++++.++++.+.+ +++++.+++.++++++.+.|++ + ++.+..+.    .+++++.++. .+..++.+.| .  
T Consensus       282 ~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~~~~  354 (401)
T 2bwn_A          282 P-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA-L-GMPIIDHG----SHIVPVVIGDPVHTKAVSDMLLSDY  354 (401)
T ss_dssp             H-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCS----SSCEEEECCCHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-C-CCcccCCC----CCeEEEEeCChHHHHHHHHHHHhcC
Confidence            4 666677788887654 4688899999999999999998 5 66655432    3466777753 3456677766 2  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ||.+.++..+..                +.+.+++|++++.+++++++++++++|+++++++
T Consensus       355 gi~v~~~~~~~~----------------~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          355 GVYVQPINFPTV----------------PRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             CEECCEECTTTS----------------CTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred             CEEEeecCCCCC----------------CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence            898887643211                0123689999998899999999999999887543

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-31  Score=256.81  Aligned_cols=320  Identities=14%  Similarity=0.125  Sum_probs=232.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++|+.+.+++.+++....   .. .|...    ....++++.+++++    |  .++++|++|+|+++|+.++++++.  
T Consensus        70 ~~~~~v~~a~~~~~~~~~---~~-~Y~~~----~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~--  139 (447)
T 3b46_A           70 SPPQFAIKEAQKALDIPM---VN-QYSPT----RGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL--  139 (447)
T ss_dssp             CCCHHHHHHHHHHTTSGG---GG-SCCCT----TCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHhCcC---CC-CCCCC----CCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc--
Confidence            367899999998886411   00 12111    12345666666665    4  355689999999999999999987  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC------------CCCCCHHHHHHHhcCCceEEEEecccCcc
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN------------NGLITLSQLEEKICSDTILVSVMLVNNEI  149 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~------------~~~~d~~~l~~~i~~~~~~v~~~~~~~~t  149 (397)
                        ++||+|++..+.|+++...+...   |.+++.+|.+.            ++.+|+++|++++++++++|++++++|||
T Consensus       140 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt  214 (447)
T 3b46_A          140 --NAGDEVIVFEPFFDQYIPNIELC---GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPI  214 (447)
T ss_dssp             --CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred             --CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCCCCC
Confidence              78999999999999998887766   99999998864            35689999999999899999999999999


Q ss_pred             ccccc---HHHHHHHHHhcCcEEEEecccccCcc---ccccC-----cccccEEEeccccccCCCC--ceEEEE-ecCCC
Q psy8850         150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQ-----NYKVDLMSFSAHKIYGPKG--IGALYI-RRNPR  215 (397)
Q Consensus       150 G~~~~---l~~i~~l~~~~gi~livD~a~~~~~~---~~~~~-----~~~~d~~~~s~~K~~g~~g--~g~~~~-~~~~~  215 (397)
                      |.++|   +++|+++|++||++||+|++|+....   ...+.     ..+.++++.|++|.+|+.|  +|++++ +++..
T Consensus       215 G~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~  294 (447)
T 3b46_A          215 GKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELL  294 (447)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHH
T ss_pred             CcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHH
Confidence            99976   78899999999999999999984321   11121     2367999999999666555  899999 76554


Q ss_pred             CccccccccCCccccccCCCCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCce
Q psy8850         216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHN  293 (397)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  293 (397)
                      +.+.....       ....+.+.....++.++++..  .++++++.++++++++++.+.|++ + ++.+..+..   +.+
T Consensus       295 ~~l~~~~~-------~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~  362 (447)
T 3b46_A          295 SYAAKAHT-------RICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE-L-GLPYTAPEG---TYF  362 (447)
T ss_dssp             HHHHHHHH-------HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-H-TCCEECCSB---SSE
T ss_pred             HHHHHHHh-------hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe---eEE
Confidence            44433211       112234555566666777765  345788899999999999999998 5 666664433   445


Q ss_pred             EEEEecCC----------------ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850         294 LNISFNFI----------------EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT  354 (397)
Q Consensus       294 ~~~~~~~~----------------~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~  354 (397)
                      +++.++..                +..++...|.   ||.+.+|..|....            ......++|||++..  
T Consensus       363 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~------------~~~~~~~~iRls~~~--  428 (447)
T 3b46_A          363 VLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKE------------HEKAAENLLRFAVCK--  428 (447)
T ss_dssp             EEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGG------------GGGGGTTEEEEECCS--
T ss_pred             EEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCC------------ccCCCCCEEEEEEeC--
Confidence            66676532                3446776552   89999987665310            001124889999985  


Q ss_pred             CHHHHHHHHHHHHH
Q psy8850         355 TEKEIDFTIKLLKM  368 (397)
Q Consensus       355 ~~~~i~~~~~~l~~  368 (397)
                      +++++++++++|++
T Consensus       429 ~~e~l~~~~~~l~~  442 (447)
T 3b46_A          429 DDAYLENAVERLKL  442 (447)
T ss_dssp             CHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHHHH
Confidence            79999999998876

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=100.00  E-value=1.1e-30  Score=242.13  Aligned_cols=280  Identities=18%  Similarity=0.170  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC-CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC
Q psy8850          43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN  121 (397)
Q Consensus        43 ~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g-~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~  121 (397)
                      ..++++.+++++++++++|++++|+++|+++++.++.    ++| |+|+++.++|+++...+...   |.+++.+|.+++
T Consensus        60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~----~~g~d~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~  132 (356)
T 1fg7_A           60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVECRTVPTLDN  132 (356)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHHHH---TCEEEECCCCTT
T ss_pred             HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh----CCCCCEEEEeCCChHHHHHHHHHc---CCEEEEeeCCCC
Confidence            5789999999999988899999999999999999887    788 99999999999999888777   999999998877


Q ss_pred             CCCCHHHHHHHhcCCceEEEEecccCcccccccHHH---HHHHHHhcCcEEEEecccccCcc--c-ccc-CcccccEEEe
Q psy8850         122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE---IGELCRSKGVIFHCDAAQAVGKI--D-INI-QNYKVDLMSF  194 (397)
Q Consensus       122 ~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~---i~~l~~~~gi~livD~a~~~~~~--~-~~~-~~~~~d~~~~  194 (397)
                      +.+|+++++++++ ++++|++++++||||.+.|.++   |+++|+ +|+++|+|++|+....  + .++ ...+.++++.
T Consensus       133 ~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~  210 (356)
T 1fg7_A          133 WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILR  210 (356)
T ss_dssp             SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred             CCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEe
Confidence            7899999999998 8999999999999999999655   555566 9999999999984331  1 122 2235689999


Q ss_pred             ccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy8850         195 SAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYN  271 (397)
Q Consensus       195 s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~  271 (397)
                      |++|.+|+.|  +|+++++++..+.+......         .+.+.....+..++++... +++++..++++++++++.+
T Consensus       211 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  281 (356)
T 1fg7_A          211 TLSKAFALAGLRCGFTLANEEVINLLMKVIAP---------YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIA  281 (356)
T ss_dssp             ESSSTTCCGGGCCEEEEECHHHHHHHHHHSCS---------SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHhhcCchhhhEEEEeCHHHHHHHHHhcCC---------CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence            9999777555  69999987655444332211         1344455555545665321 2367888999999999999


Q ss_pred             HHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecc-cCccCCCCCChhhHHHhhCCCccccCceEEE
Q psy8850         272 GLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSS-GSACTSASLEPSYVLRALGCNDELAHSSIRF  348 (397)
Q Consensus       272 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  348 (397)
                      .|++ ++++....+..   +.++++.++  +..++.+.|.  ||.+.+ |..|..                   .+++||
T Consensus       282 ~L~~-~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~L~~~gI~v~~~g~~~~~-------------------~~~iRi  336 (356)
T 1fg7_A          282 ALKE-IPCVEQVFDSE---TNYILARFK--ASSAVFKSLWDQGIILRDQNKQPSL-------------------SGCLRI  336 (356)
T ss_dssp             HHHH-STTEEEECCCS---SSEEEEEET--THHHHHHHHHHTTEECEECTTSTTC-------------------TTEEEE
T ss_pred             HHHh-CCCceEECCCC---CeEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCC-------------------CCeEEE
Confidence            9998 76643333322   456667775  5667777775  899988 754432                   268999


Q ss_pred             eeCCCCCHHHHHHHHHHHHH
Q psy8850         349 TIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       349 ~~~~~~~~~~i~~~~~~l~~  368 (397)
                      +++   +++++++++++|++
T Consensus       337 s~~---~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          337 TVG---TREESQRVIDALRA  353 (356)
T ss_dssp             ECC---CHHHHHHHHHHHHT
T ss_pred             EeC---CHHHHHHHHHHHHh
Confidence            997   58999999999875

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=100.00  E-value=2e-30  Score=249.38  Aligned_cols=335  Identities=14%  Similarity=0.133  Sum_probs=236.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ...+.+.+++.+.+..  .+|.. ....+....+...++++++++++|.+. .+++++||++|+.+++.++.....++||
T Consensus        77 ~~~p~v~~~~~~~~~~--~~~~~-~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd  152 (474)
T 1wyu_B           77 KYNPKLHEEAARLFAD--LHPYQ-DPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHEDRGE  152 (474)
T ss_dssp             CCCCHHHHHHHHTTSS--CCTTS-CGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHh--cCCCC-chhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHhcCC
Confidence            4457777777765322  13322 111345566888999999999999974 4678899999999877665432224665


Q ss_pred             -----EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccc-ccHHHHHHH
Q psy8850          88 -----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI-QPILEIGEL  161 (397)
Q Consensus        88 -----~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~-~~l~~i~~l  161 (397)
                           +|+++.++|+++..++...   |.+++.+|.++++.+|+++|++++++++++|+++++ |++|.+ .++++|+++
T Consensus       153 ~~~r~~Vlv~~~~h~~~~~~~~~~---G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~l  228 (474)
T 1wyu_B          153 GRTRRVVLVPDSAHGSNPATASMA---GYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISRL  228 (474)
T ss_dssp             TTTCCEEEEETTSCTHHHHHHHHT---TCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHHH
T ss_pred             ccCCCEEEEeCCcChhhHHHHHHC---CCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHHH
Confidence                 9999999999999887766   999999999888999999999999999999999987 689998 689999999


Q ss_pred             HHhcCcEEEEecccccCcc-ccccCcccccEEEecccc-ccCCC-----CceEEEEecCCCCccccccc--cCC------
Q psy8850         162 CRSKGVIFHCDAAQAVGKI-DINIQNYKVDLMSFSAHK-IYGPK-----GIGALYIRRNPRTRIEAQIH--GGG------  226 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~-~~~~~~~~~d~~~~s~~K-~~g~~-----g~g~~~~~~~~~~~~~~~~~--~~~------  226 (397)
                      |++||+++|+|++|+.+.. ..+...+++|++++|+|| +.+|.     |+|+++++++....+.....  ++.      
T Consensus       229 ~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~  308 (474)
T 1wyu_B          229 CKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDF  308 (474)
T ss_dssp             HHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEEC
T ss_pred             HHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecc
Confidence            9999999999999975543 223334478999999999 55452     58999999876655542111  110      


Q ss_pred             -cc---ccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850         227 -HE---YGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F  300 (397)
Q Consensus       227 -~~---~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~  300 (397)
                       ..   .++..++.+...+.+..++++.+ .+++++..+++.++++++.+.|++ + ++.+..+.. . ...+.+.++ +
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~-~-~~~~~~~~~~~  384 (474)
T 1wyu_B          309 DRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-K-GYRVPYDGP-S-MHEFVAQPPEG  384 (474)
T ss_dssp             CCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCSSCSS-C-CSCEEEBCSTT
T ss_pred             cCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CcEecCCCC-c-ceEEEEEcCCC
Confidence             00   12233344444444444444432 346788899999999999999998 5 666532211 1 122344442 3


Q ss_pred             CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+..++.+.|.  |+.+ ++..+..                 ...+++||+++..++++++++++++|++++++
T Consensus       385 ~~~~~l~~~L~~~Gi~~-~~~~~~~-----------------~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          385 FRALDLAKGLLELGFHP-PTVYFPL-----------------IVKEALMVEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             CCHHHHHHHHHHTTCCC-CEESCST-----------------TSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHCCccc-ccccccc-----------------ccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence            46677887775  6654 2222110                 11378999999888999999999999988754

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=100.00  E-value=2.8e-30  Score=249.35  Aligned_cols=334  Identities=13%  Similarity=0.119  Sum_probs=234.9

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC---------CcEEEeCChhHHHHHHHHHhHhh
Q psy8850          11 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus        11 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ..+.+.+..++.     +....+..+........++++++++++|.+.         ..+++|+|||+|+.+++.++...
T Consensus        88 ~~~~~~~~~~~n-----~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~  162 (486)
T 1js3_A           88 AMLADMLCGAIG-----CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK  162 (486)
T ss_dssp             HHHHHHHHHHHC-----CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-----cCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHH
Confidence            345555555542     2221344455566777789999999999975         35899999999999998876532


Q ss_pred             hcc-----CC---------C-EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCc------eEE
Q psy8850          82 YKK-----RG---------K-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDT------ILV  140 (397)
Q Consensus        82 ~~~-----~g---------~-~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~------~~v  140 (397)
                      ..+     .|         + .|+++.++|+++..++..+   |++++.+|+++++.+|+++|++++++++      .+|
T Consensus       163 ~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~---G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~v  239 (486)
T 1js3_A          163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV  239 (486)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhC---CCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEE
Confidence            111     02         2 4889999999999988888   9999999998889999999999998765      388


Q ss_pred             EEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcccc-ccCc-----ccccEEEecccc-ccCCCCceEEEEecC
Q psy8850         141 SVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI-NIQN-----YKVDLMSFSAHK-IYGPKGIGALYIRRN  213 (397)
Q Consensus       141 ~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~-~~~~-----~~~d~~~~s~~K-~~g~~g~g~~~~~~~  213 (397)
                      ++++++|++|.+.|+++|+++|++||+++|+|++|+.+.... +...     .++|++++|+|| +++|.|+|+++++++
T Consensus       240 v~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~  319 (486)
T 1js3_A          240 VATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR  319 (486)
T ss_dssp             EEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCH
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCH
Confidence            999999999999999999999999999999999999765422 2211     268999999999 555778999999764


Q ss_pred             C--CCcc---ccccccCCc----ccc---cc-CCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q psy8850         214 P--RTRI---EAQIHGGGH----EYG---LR-SGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEE  279 (397)
Q Consensus       214 ~--~~~~---~~~~~~~~~----~~~---~~-~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~  279 (397)
                      .  ...+   ..++.+...    ...   +. ..+.. ...+++.+++..+ .+++.++.++..++++++.+.|++ +++
T Consensus       320 ~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr-~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~  397 (486)
T 1js3_A          320 TDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-DPR  397 (486)
T ss_dssp             HHHHGGGC------------CCSCCCGGGSSSCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTT
T ss_pred             HHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCc-hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            2  1222   111111100    000   00 01111 1345555666644 457899999999999999999999 889


Q ss_pred             EEEeCCCCCCCCceEEEEecCCC--hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCC
Q psy8850         280 IYINGDMNNRIPHNLNISFNFIE--GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFT  354 (397)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~  354 (397)
                      +.+..++.   ..++.|.+++.+  ..++.+.|.  |+.+..+..+                   .+.+++|+++. ..+
T Consensus       398 ~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-------------------~~~~~lRi~~~~~~~  455 (486)
T 1js3_A          398 FEVCAEVT---LGLVCFRLKGSDGLNEALLERINSARKIHLVPCRL-------------------RGQFVLRFAICSRKV  455 (486)
T ss_dssp             EEECSCCC---SSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEE-------------------TTEEEEEEECCCTTC
T ss_pred             eEEeCCCc---eeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEE-------------------CCEEEEEEEeCCCCC
Confidence            99876533   456677775422  356666664  5432221100                   12378999974 557


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhc
Q psy8850         355 TEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       355 ~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      +.++|++++++|+++++++.+.
T Consensus       456 t~~di~~~~~~l~~~~~~~~~~  477 (486)
T 1js3_A          456 ESGHVRLAWEHIRGLAAELLAA  477 (486)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999998877653

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=7.5e-32  Score=257.66  Aligned_cols=341  Identities=11%  Similarity=0.038  Sum_probs=232.8

Q ss_pred             CHHHHHHHHHHHhhccCC-------CCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHH
Q psy8850          10 DPRVVDKMIPYLRVQFGN-------PASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIK   76 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~   76 (397)
                      ++.+.+++.+++.....+       +.+..+..+|.......++++.+++++      ++++++|++|+|+++|+++++.
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~  124 (444)
T 3if2_A           45 IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFN  124 (444)
T ss_dssp             CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHH
Confidence            566777777777665544       320022233443445677788888877      5677899999999999999999


Q ss_pred             HhHhhhccCCC--------------EEEEc-CCCChhhHHHHH---HHhhCCcEEEEeccCC-CC----CCCHHHHHHH-
Q psy8850          77 GAAHFYKKRGK--------------HIITV-QTEHKSVLDSIR---KLENDGFRVTYLKPKN-NG----LITLSQLEEK-  132 (397)
Q Consensus        77 ~l~~~~~~~g~--------------~vl~~-~~~~~s~~~~~~---~~~~~g~~v~~v~~~~-~~----~~d~~~l~~~-  132 (397)
                      ++.    ++||              +|+++ .++|+++.....   .+...|..+..++.++ +|    .+|+++|+++ 
T Consensus       125 ~l~----~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l  200 (444)
T 3if2_A          125 LFG----GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLP  200 (444)
T ss_dssp             HSS----EEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCH
T ss_pred             HHh----CCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHH
Confidence            987    6776              77775 889998875432   2233478888888875 33    6899999998 


Q ss_pred             --hcCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcccc-----ccCcccccEEEeccccc-cC
Q psy8850         133 --ICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDI-----NIQNYKVDLMSFSAHKI-YG  201 (397)
Q Consensus       133 --i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~~-----~~~~~~~d~~~~s~~K~-~g  201 (397)
                        +++++++|++++++||||.++|   +++|+++|++||++||+|++|+.+....     .....+.+++++|+||+ ..
T Consensus       201 ~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~  280 (444)
T 3if2_A          201 ALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLP  280 (444)
T ss_dssp             HHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCG
T ss_pred             HhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCC
Confidence              6788999999999999999999   7889999999999999999998432211     11223678999999995 22


Q ss_pred             CCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHhhhcC
Q psy8850         202 PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKE-ELKRILFLQKRLYNGLMESIE  278 (397)
Q Consensus       202 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~--~~~~~~-~~~~~~~~~~~l~~~l~~~~~  278 (397)
                      +.++|+++.+++....+......      .. ...+.....++..+++..  .....+ ..+.+.++++.+.+.|.+.++
T Consensus       281 G~r~G~~~~~~~l~~~~~~~~~~------~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  353 (444)
T 3if2_A          281 GMRTGIIVADAKVIEAVSAMNAV------VN-LAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALG  353 (444)
T ss_dssp             GGCCEEEECCHHHHHHHHHHHHH------HH-SSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCceEEEEECHHHHHHHHHHHHh------cc-CCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33478888776554444332211      01 122333333333444321  122333 566777888888888877555


Q ss_pred             c--EEEeCCCCCCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC
Q psy8850         279 E--IYINGDMNNRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR  352 (397)
Q Consensus       279 ~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~  352 (397)
                      +  +.+..+..   +.++++.++.  .+..++...|.  ||.+.+|..|..+...++         .....++|||+++.
T Consensus       354 ~~~~~~~~~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~---------~~~~~~~iRis~~~  421 (444)
T 3if2_A          354 DYPLMIHKPEG---AIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSD---------YQHAHECIRMSIAA  421 (444)
T ss_dssp             SSSEEEECCCB---SSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTT---------CSGGGSEEEEESSS
T ss_pred             cCCceEecCCc---cEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcc---------cccCCCeEEEEEeC
Confidence            4  55554433   4566777763  56778887776  999999988765221100         01224789999997


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         353 FTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       353 ~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                        ++++|++++++|.++++++.+
T Consensus       422 --~~e~i~~~l~~l~~~~~~~~~  442 (444)
T 3if2_A          422 --DEQTLIDGIKVIGEVVRELYD  442 (444)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHT
T ss_pred             --CHHHHHHHHHHHHHHHHHHHc
Confidence              899999999999999987754

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=100.00  E-value=4.5e-30  Score=248.96  Aligned_cols=316  Identities=18%  Similarity=0.204  Sum_probs=222.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChhHHHHHHHHHhHhhh----ccCC-----C-EEEEcCCCChhhH
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFY----KKRG-----K-HIITVQTEHKSVL  100 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~--~~~i~~~~g~t~a~~~~l~~l~~~~----~~~g-----~-~vl~~~~~~~s~~  100 (397)
                      +..+........++.+++++++|++  .+++++++|||+|+.+++.++....    .++|     + +|+++.++|+++.
T Consensus       124 ~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~  203 (504)
T 2okj_A          124 YEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK  203 (504)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH
T ss_pred             hhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH
Confidence            3334445566777889999999998  6789999999999999999875321    0134     5 8999999999999


Q ss_pred             HHHHHHhhCCc-EEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEec
Q psy8850         101 DSIRKLENDGF-RVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA  173 (397)
Q Consensus       101 ~~~~~~~~~g~-~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~  173 (397)
                      .++..++. |. +++.+|.++++.+|+++|++++++      +|++|++++++|++|.+.|+++|+++|++||+++|+|+
T Consensus       204 ~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~  282 (504)
T 2okj_A          204 KAGAALGF-GTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA  282 (504)
T ss_dssp             HHHHHTTS-CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHcCC-CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEeh
Confidence            98887732 33 899999988899999999999976      58999999999999999999999999999999999999


Q ss_pred             ccccCccc-----cccCcc-cccEEEeccccc-cCCCCceEEEEecC-CCCc----cccccccCCcccc---------cc
Q psy8850         174 AQAVGKID-----INIQNY-KVDLMSFSAHKI-YGPKGIGALYIRRN-PRTR----IEAQIHGGGHEYG---------LR  232 (397)
Q Consensus       174 a~~~~~~~-----~~~~~~-~~d~~~~s~~K~-~g~~g~g~~~~~~~-~~~~----~~~~~~~~~~~~~---------~~  232 (397)
                      +|+.+...     ..+... ++|++++|+||+ ++|.|+|+++++++ ....    ..+++.++.....         ..
T Consensus       283 a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  362 (504)
T 2okj_A          283 AWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQ  362 (504)
T ss_dssp             TTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSC
T ss_pred             hhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCC
Confidence            99876643     223322 789999999995 55888999999875 2221    1223322111000         00


Q ss_pred             CCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC---------
Q psy8850         233 SGT-LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE---------  302 (397)
Q Consensus       233 ~~~-~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  302 (397)
                      .+. .+...+++...++.  .+++.++.++..++++++.+.|++ ++++.+..+.... ...+.|.+....         
T Consensus       363 ~~rr~~~l~~~a~l~~lg--~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~p~-~~~v~f~~~~~~~~~~~~~~~  438 (504)
T 2okj_A          363 CGRHVDIFKFWLMWKAKG--TVGFENQINKCLELAEYLYAKIKN-REEFEMVFNGEPE-HTNVCFWYIPQSLRGVPDSPQ  438 (504)
T ss_dssp             SSCBCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTT-CTTEEESSSSCCS-SSCEEEEECCGGGSSCCCCHH
T ss_pred             CCCCccHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecCCCC-eEEEEEEEeCccccccccchh
Confidence            010 11222333323332  457888999999999999999999 8899888631111 344455542110         


Q ss_pred             --------hHHHHHHhC--Cc-EecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCCHHHHHHHHHHHHHHH
Q psy8850         303 --------GESLLMAIK--DI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       303 --------~~~~~~~l~--~i-~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~  370 (397)
                              ..++.+.|.  |+ .+.++. +.                  ...+++|+++. ..++++||++++++|++++
T Consensus       439 ~~~~~~~~~~~l~~~L~~~G~~~~~~~~-~~------------------~~~~~lRis~~~~~~t~edi~~~~~~l~~~~  499 (504)
T 2okj_A          439 RREKLHKVAPKIKALMMESGTTMVGYQP-QG------------------DKANFFRMVISNPAATQSDIDFLIEEIERLG  499 (504)
T ss_dssp             HHHHHTTHHHHHHHHHHHHTSCEEEEEE-ET------------------TEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcEEEEeeE-EC------------------CceEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence                    234555554  53 222110 00                  01268999996 7899999999999999887


Q ss_pred             HH
Q psy8850         371 KK  372 (397)
Q Consensus       371 ~~  372 (397)
                      ++
T Consensus       500 ~~  501 (504)
T 2okj_A          500 QD  501 (504)
T ss_dssp             TC
T ss_pred             HH
Confidence            54

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.98  E-value=1.2e-30  Score=245.58  Aligned_cols=334  Identities=12%  Similarity=0.079  Sum_probs=220.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      |+.++++..+.+.+++..     +.++.. .|.+++...+...++++.+++++|.+  +.++++||++|+.+++.++.  
T Consensus        32 ~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~r~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~--  101 (398)
T 1gc0_A           32 VYQTATFTFPTVEYGAAC-----FAGEQA-GHFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL--  101 (398)
T ss_dssp             BCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--
T ss_pred             ccCCCccccCCHHHHHHh-----hcCCcC-CCcccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--
Confidence            567777777777776642     223333 45455555678899999999999987  56667777899999999886  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                        ++|++|+++.++|+++...+..+ ...|.+++.++.+     |++++++++++++++|++++++||||.+.|+++|++
T Consensus       102 --~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~  174 (398)
T 1gc0_A          102 --RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAK  174 (398)
T ss_dssp             --CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             --cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHH
Confidence              78999999999999998887554 3449999999864     899999999999999999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccccEEEeccccccC-CCC--ceEEEEecCCCC-ccccccccCCccccccCCCC
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKG--IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  236 (397)
                      +|++||+++|+|++|+.+.....+ ..++|+++.|+||.+| +.+  .|+++++++... .+.....+      +..++.
T Consensus       175 l~~~~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~------~~~~~~  247 (398)
T 1gc0_A          175 IARKHGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD------MTGAVL  247 (398)
T ss_dssp             HHGGGTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH------HTCCCC
T ss_pred             HHHHcCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc------cCCCCC
Confidence            999999999999999866543222 3478999999999544 543  599988865433 23322211      012345


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEE--------------EeCCCCCCCCceEEEEecCCC
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY--------------INGDMNNRIPHNLNISFNFIE  302 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~  302 (397)
                      +....++...+++.+    ..+.++..++.+.+.+.|++ .+.+.              +..+.....++++.+.+++. 
T Consensus       248 ~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-  321 (398)
T 1gc0_A          248 SPHDAALLMRGIKTL----NLRMDRHCANAQVLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG-  321 (398)
T ss_dssp             CHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHHHHHT-CTTEEEEEEC----------------CCTTEEEEEETTH-
T ss_pred             CHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHhc-CCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC-
Confidence            555555444555543    34455666667777777766 54432              22221123467778887642 


Q ss_pred             hHHHHHHhC--CcEecc---cCc------cCC--CCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSS---GSA------CTS--ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~---g~~------~~~--~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      .......+.  ++....   |..      |..  ....++..+...|+..    +.||||++..+++++|+.+.++|+++
T Consensus       322 ~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~----~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          322 IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISE----GLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCC----CeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence            222333332  444333   432      111  1123445667777664    89999999999999999999998764

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.98  E-value=2.2e-31  Score=251.70  Aligned_cols=320  Identities=15%  Similarity=0.132  Sum_probs=228.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCC-CcEEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADP-REIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~-~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++|+.+++++.+.+.....   . .|....    ...++++.++++++      +++ ++|++++|+++|+.+++.++. 
T Consensus        36 ~~~~~v~~a~~~~~~~~~~---~-~y~~~~----g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~-  106 (410)
T 3e2y_A           36 SPPSYVKEELSKAAFIDNM---N-QYTRGF----GHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV-  106 (410)
T ss_dssp             CCCHHHHHHHHHHHTCGGG---G-SCCCTT----CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHhCccc---c-CCCCCC----ChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-
Confidence            5789999999998864210   0 111111    23445555555554      555 789999999999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-----------CCCCCCHHHHHHHhcCCceEEEEecccCcc
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-----------NNGLITLSQLEEKICSDTILVSVMLVNNEI  149 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-----------~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t  149 (397)
                         ++|++|++..+.|+++...+...   |.+++.++.+           .++.+|++++++++++++++|++++++|||
T Consensus       107 ---~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~npt  180 (410)
T 3e2y_A          107 ---DPGDEVIIMVPFYDCYEPMVRMA---GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPL  180 (410)
T ss_dssp             ---CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred             ---CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCC
Confidence               78999999999999998877776   9999999876           244689999999999999999999999999


Q ss_pred             ccccc---HHHHHHHHHhcCcEEEEecccccCc----cccccC----cccccEEEeccccccCCCC--ceEEEEecCCCC
Q psy8850         150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRT  216 (397)
Q Consensus       150 G~~~~---l~~i~~l~~~~gi~livD~a~~~~~----~~~~~~----~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~  216 (397)
                      |.+++   +++|+++|++||+++|+|++|+...    ...++.    ..+.++++.|++|.+|+.|  +|+++++++...
T Consensus       181 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~  260 (410)
T 3e2y_A          181 GKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIK  260 (410)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHH
T ss_pred             CcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHHH
Confidence            99974   7889999999999999999997422    111221    1245688999999666444  799988876555


Q ss_pred             ccccccccCCccccccCCCCchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCC
Q psy8850         217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR  289 (397)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  289 (397)
                      .+......       ...+.+.....++.++++.       ..++++++.++++++++++.+.|++ + ++.+..+..  
T Consensus       261 ~~~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--  329 (410)
T 3e2y_A          261 HLQTVQQN-------SFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNS-V-GLKPIVPDG--  329 (410)
T ss_dssp             HHHHHHHT-------TTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHT-T-TCEEEBCSB--
T ss_pred             HHHHHHHh-------hccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCc--
Confidence            44332211       1223455555555566653       2335788889999999999999998 5 777665543  


Q ss_pred             CCceEEEEecCCC------------hHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850         290 IPHNLNISFNFIE------------GESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT  354 (397)
Q Consensus       290 ~~~~~~~~~~~~~------------~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~  354 (397)
                       +.++++.+....            ..++...+ .  ||.+.+|..|....            ..+...++|||+++.  
T Consensus       330 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~------------~~~~~~~~iRis~~~--  394 (410)
T 3e2y_A          330 -GYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSK------------SKPHFEKLVRFCFIK--  394 (410)
T ss_dssp             -SSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTT------------THHHHTTEEEEECCC--
T ss_pred             -cEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCC------------CCCCCCCEEEEEEcC--
Confidence             445566664311            12555544 2  99999998775411            011234899999886  


Q ss_pred             CHHHHHHHHHHHHH
Q psy8850         355 TEKEIDFTIKLLKM  368 (397)
Q Consensus       355 ~~~~i~~~~~~l~~  368 (397)
                      +++++++++++|++
T Consensus       395 ~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          395 KDSTLDAAEEIFRA  408 (410)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999999875

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.98  E-value=2.9e-31  Score=245.98  Aligned_cols=321  Identities=14%  Similarity=0.180  Sum_probs=224.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      |+++..+++++.+++++.+....         +...+...+...++++++++++| ++.++++++||++|+.+++.++. 
T Consensus        12 ~~~~~~~~~~~~v~~a~~~~~~~---------~~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~~-   80 (356)
T 1v72_A           12 FSSDNIAGASPEVAQALVKHSSG---------QAGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAMT-   80 (356)
T ss_dssp             CSCGGGCCCCHHHHHHHHHTTSS---------CCCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTSC-
T ss_pred             eccCCccCCCHHHHHHHHhhccC---------cccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHhc-
Confidence            34555567889999999887532         11112224567889999999999 44459999999999999999876 


Q ss_pred             hhccCCCEEEEcCCCChhhHHH--HHHHhhCCcEEEEeccCCCCCCCHHHHHH-HhcC-------CceEEEEecccCccc
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDS--IRKLENDGFRVTYLKPKNNGLITLSQLEE-KICS-------DTILVSVMLVNNEIG  150 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~--~~~~~~~g~~v~~v~~~~~~~~d~~~l~~-~i~~-------~~~~v~~~~~~~~tG  150 (397)
                         ++|++|+++.++|+++...  +..... |.+++.+|.+ ++.+|++++++ ++++       ++++|++++++| ||
T Consensus        81 ---~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG  154 (356)
T 1v72_A           81 ---PPWGNIYCHPASHINNDECGAPEFFSN-GAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VG  154 (356)
T ss_dssp             ---CTTEEEEECTTSHHHHSSTTHHHHHTT-SCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TS
T ss_pred             ---CCCCEEEEcCccchhhhhchHHHHHhC-CcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CC
Confidence               7899999999988887654  333211 7788888875 46799999999 8876       689999999876 99


Q ss_pred             cccc---HHHHHHHHHhcCcEEEEecccccCc-----cccccC--cccccEEEeccccccCCCCceEEEEecCCCCcccc
Q psy8850         151 VIQP---ILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQ--NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA  220 (397)
Q Consensus       151 ~~~~---l~~i~~l~~~~gi~livD~a~~~~~-----~~~~~~--~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~  220 (397)
                      .++|   +++|.++|++||+++|+|++|+.+.     ......  ..+.|++++|+||.+++.|+|+++.+++....+..
T Consensus       155 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~~~~~~~~  234 (356)
T 1v72_A          155 SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSY  234 (356)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCccEEEEECHHHHhhHHH
Confidence            9655   7889999999999999999987421     111111  12678999999998556666788877665554432


Q ss_pred             ccccCCccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec
Q psy8850         221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN  299 (397)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (397)
                      ....        .+........+..++++.+.+ .+.++.+++.++++++.+.|++ ++++.+..+..   ..++++.++
T Consensus       235 ~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~~~~~~~~  302 (356)
T 1v72_A          235 RRKR--------AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTE---ANILFCRLD  302 (356)
T ss_dssp             HHHH--------TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCC---SSEEEEEEC
T ss_pred             Hhhc--------cCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-CCCcEEccCCC---ccEEEEEcC
Confidence            2110        011111112222233443332 3456678888999999999988 78888765432   445566654


Q ss_pred             CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         300 FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       300 ~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                          .++.+.|.  ||.+.+|. +.                    .+++|++++..++++++++++++|++++++.++
T Consensus       303 ----~~~~~~l~~~gi~v~~g~-~~--------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~~  355 (356)
T 1v72_A          303 ----SAMIDALLKAGFGFYHDR-WG--------------------PNVVRFVTSFATTAEDVDHLLNQVRLAADRTQE  355 (356)
T ss_dssp             ----HHHHHHHHHTTCBCBCSS-SS--------------------TTEEEEECCTTCCHHHHHHHHHHHHHTC-----
T ss_pred             ----HHHHHHHHhcCeEEeccc-cC--------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHHhhcc
Confidence                36666665  88887764 11                    278999999888999999999999998876654

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.98  E-value=3.3e-30  Score=245.59  Aligned_cols=300  Identities=13%  Similarity=0.115  Sum_probs=222.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEE
Q psy8850          36 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVT  114 (397)
Q Consensus        36 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~  114 (397)
                      .....+...++++++++++|++++++.+++|+|.+++.++.++..   ++|++|+++.++|+++...+..+.+ .|++++
T Consensus       103 ~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~---~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~  179 (438)
T 1wyu_A          103 SQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE---TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL  179 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH---HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhc---CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence            445567889999999999999877889999999665655554322   6789999999999999988876433 499999


Q ss_pred             EeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecc-cccCccccccCcccccEEE
Q psy8850         115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA-QAVGKIDINIQNYKVDLMS  193 (397)
Q Consensus       115 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a-~~~~~~~~~~~~~~~d~~~  193 (397)
                      .++. +++.+|+++    ++++|++|+++++ |++|.+.|+++|+++|+++|+++|+|.. ++.|....+ ..+++|+++
T Consensus       180 ~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~~~g~D~~~  252 (438)
T 1wyu_A          180 TLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-GAYGADIAV  252 (438)
T ss_dssp             EECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-HHHTCSEEE
T ss_pred             EEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-ccCCCCEEE
Confidence            9997 557788776    6788999999999 9999999999999999999999997754 555543332 345789999


Q ss_pred             eccccc------cCCCCceEEEEecCCCCccccccccCC-----------------ccccccCCCCch---hHHHHHHHH
Q psy8850         194 FSAHKI------YGPKGIGALYIRRNPRTRIEAQIHGGG-----------------HEYGLRSGTLAT---HQIVGMGEA  247 (397)
Q Consensus       194 ~s~~K~------~g~~g~g~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~l~~a  247 (397)
                      +|.+|+      +|| |+|+++++++....+.....|+.                 ...++..++++.   ..++++.++
T Consensus       253 ~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa  331 (438)
T 1wyu_A          253 GDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGA  331 (438)
T ss_dssp             EECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHH
T ss_pred             ECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHH
Confidence            997762      355 78999999876655543322210                 001233455655   455555555


Q ss_pred             --HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe--cccCc
Q psy8850         248 --FRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV--SSGSA  320 (397)
Q Consensus       248 --l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~--~~g~~  320 (397)
                        +..+. ++++++.+++.++++++.+.|++ ++++.+..+.  .....+.+.++ .+..++.+.|.  ||.+  .++.+
T Consensus       332 ~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~--~~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~~~~~~  407 (438)
T 1wyu_A          332 MYLAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTPK--PFFNEFALALP-KDPEAVRRALAERGFHGATPVPRE  407 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSCS--SBCSEEEEECS-SCHHHHHHHHHHTTCCCCEECCTT
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEECCCC--CeEEEEEEeCC-CCHHHHHHHHHHCCceeccccccc
Confidence              55443 46888999999999999999999 8888887642  11233344443 46678887776  7777  44533


Q ss_pred             cCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         321 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      +.                    ++++||++..+++.+|+++++++|++++
T Consensus       408 ~~--------------------~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          408 YG--------------------ENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             SC--------------------SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             cC--------------------CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence            32                    3899999999999999999999998763

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.98  E-value=4.2e-31  Score=246.92  Aligned_cols=315  Identities=12%  Similarity=-0.028  Sum_probs=228.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++|+.+++++.+.+.....++..      ....+...++.+.+.+.+|.  ++++|++|+|+++|+.+++.++.    ++
T Consensus        36 ~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~----~~  105 (376)
T 3ezs_A           36 ETPKFIQDALKNHTHSLNIYPKS------AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL----FD  105 (376)
T ss_dssp             CCCHHHHHHHHTTGGGGGSCCCT------TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT----TT
T ss_pred             CCCHHHHHHHHHhhhhcCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc----CC
Confidence            46789999998877443322211      11234455555555555687  67789999999999999999987    78


Q ss_pred             --CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          86 --GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        86 --g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                        ||+|++..++|+++...+...   |.+++.+|.++++.+++ ++++++.+++++|++++++||||.++|   +++|++
T Consensus       106 ~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~  181 (376)
T 3ezs_A          106 YQNPTIAYPNPFYQIYEGAAKFI---KAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSPNNPTGRTLSLEELISWVK  181 (376)
T ss_dssp             CSSCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred             CCCCEEEEecCCcHhHHHHHHHc---CCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHHH
Confidence              899999999999998887766   99999999986644555 777777778999999999999999998   567788


Q ss_pred             HHHhcCcEEEEecccccCcc---ccccC---------cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCC
Q psy8850         161 LCRSKGVIFHCDAAQAVGKI---DINIQ---------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~---~~~~~---------~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      +|++||+++|+|++|+....   +....         ..+.++++.|++|.+|..|  +|+++.+++....+.....   
T Consensus       182 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---  258 (376)
T 3ezs_A          182 LALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRA---  258 (376)
T ss_dssp             HHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHT---
T ss_pred             HHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHh---
Confidence            89999999999999985332   11111         3467899999999665444  7998887665555443321   


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL  306 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (397)
                          ....+.+.....++.++++. .+.+++..+++.++++++.+.|+    ++.  .+.   .+.++++.++  +..++
T Consensus       259 ----~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~----~~~--~~~---~~~~~~~~~~--~~~~~  322 (376)
T 3ezs_A          259 ----YLGYTSANAIQKASEAAWLD-DRHAEFFRNIYANNLKLARKIFK----NTL--IYP---YSFYVYLPVQ--NGENF  322 (376)
T ss_dssp             ----TTCCCCCHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHST----TCC--CCS---BSSEEEEECS--CHHHH
T ss_pred             ----hhcCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHhc----CCC--CCC---cceEEEEECC--CHHHH
Confidence                11234566666666666664 33567788888888888888876    222  121   1455666665  56677


Q ss_pred             HHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       307 ~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+.|.   ||.+.+|..|...               ....+++||+++.  +++++++++++|++++++
T Consensus       323 ~~~l~~~~gi~v~~g~~~~~~---------------~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          323 AKTLYQNEGIITLPALYLGRN---------------RIGADYVRLALVY--DTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             HHHHHHHHCCBCEEGGGGCST---------------TTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCEEEeCcHHhCCC---------------CCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence            76663   8999999777631               1224899999985  899999999999998754

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.98  E-value=2.7e-31  Score=253.15  Aligned_cols=296  Identities=18%  Similarity=0.220  Sum_probs=216.8

Q ss_pred             HHHHHHHHHHHHhC--------CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          42 AIEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        42 ~~~~~~~~la~~~~--------~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      ...++++.++++++        ++++++++++|+++|+.+++.++.    ++||+|+++.+.|+++...+..  ..|.++
T Consensus        87 g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~--~~g~~~  160 (435)
T 3piu_A           87 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLKW--RTGVEI  160 (435)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTTT--TTCCEE
T ss_pred             CcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc----CCCCeEEECCCccccHHHHHHH--hcCCEE
Confidence            45678888888887        667899999999999999999987    7899999999999999876551  239999


Q ss_pred             EEeccCC--CCCCCHHHHHHHhcC------CceEEEEecccCcccccccH---HHHHHHHHhcCcEEEEecccccCcc--
Q psy8850         114 TYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI--  180 (397)
Q Consensus       114 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~--  180 (397)
                      +.++.++  ++.+|+++|++++++      ++++|++++++||||.++|.   ++|+++|++||+++|+|++|+.+..  
T Consensus       161 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~  240 (435)
T 3piu_A          161 VPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS  240 (435)
T ss_dssp             EEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS
T ss_pred             EEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence            9999875  345899999999976      89999999999999999885   7788889999999999999985221  


Q ss_pred             --ccccCc-------------ccccEEEeccccccCCCC--ceEEEEecC-CCCccccccccCCccccccCCCCchhHHH
Q psy8850         181 --DINIQN-------------YKVDLMSFSAHKIYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIV  242 (397)
Q Consensus       181 --~~~~~~-------------~~~d~~~~s~~K~~g~~g--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (397)
                        ......             .+.++++.|++|.+|..|  +|+++++++ ....+.....         .+..+.....
T Consensus       241 ~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  311 (435)
T 3piu_A          241 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS---------FGLVSSQTQH  311 (435)
T ss_dssp             SCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG---------GSCCCHHHHH
T ss_pred             CCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhh---------cCCCCHHHHH
Confidence              111111             233488999999666444  799988533 2222221110         1123334444


Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-------ChHHHHHHh--
Q psy8850         243 GMGEAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI--  310 (397)
Q Consensus       243 ~l~~al~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l--  310 (397)
                      ++.++++   ++.+.+++..+++.++++++.+.|++ . ++.+..+..   +.++++.++..       +..++...|  
T Consensus       312 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~l~~~~~~~~~~~~~~~~~~l~~  386 (435)
T 3piu_A          312 LLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-S-GISCLNGNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVY  386 (435)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-TCEECCCCS---SSEEEEECGGGSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcccCCCe---eEEEEEEcccccccCCchhHHHHHHHHHH
Confidence            4444444   22345677889999999999999998 4 777665433   35667777642       234666665  


Q ss_pred             C-CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         311 K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       311 ~-~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      + ||.+.+|..|.+                 ..++++||+++.. +++++++++++|+++++++++
T Consensus       387 ~~gi~v~~g~~~~~-----------------~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~~  434 (435)
T 3piu_A          387 EVHLNISPGSSCHC-----------------TEPGWFRVCFANL-PERTLDLAMQRLKAFVGEYYN  434 (435)
T ss_dssp             TSCEECEEGGGGTC-----------------SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC-
T ss_pred             HCCEEEeCCcccCC-----------------CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHhC
Confidence            3 899999876654                 1248899999765 899999999999999987653

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.98  E-value=8.6e-31  Score=244.65  Aligned_cols=330  Identities=15%  Similarity=0.137  Sum_probs=228.3

Q ss_pred             HHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCCEEEE
Q psy8850          13 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGKHIIT   91 (397)
Q Consensus        13 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~~vl~   91 (397)
                      +.+++.+.+....       +    ...+...++++.++++++.+  ++++++||++|+.+++.++ .    ++||+|++
T Consensus        21 ~~~~~~~~~~~~~-------~----~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~----~~gd~v~~   83 (374)
T 3uwc_A           21 YLNDLREFIKTAD-------F----TLGAELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNI----GAGDEVIT   83 (374)
T ss_dssp             HHHHHHHHHHHTC-------C----SSCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC----CTTCEEEE
T ss_pred             HHHHHHHHHHcCC-------c----ccChhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC----CCCCEEEE
Confidence            8888887776521       1    11346789999999999987  7899999999999999988 6    78999999


Q ss_pred             cCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEE
Q psy8850          92 VQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC  171 (397)
Q Consensus        92 ~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~liv  171 (397)
                      +.++|+++...+...   |.+++.++.++++.+|++++++++++++++|+   ++||||.+.|+++|.++|++||+++|+
T Consensus        84 ~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~  157 (374)
T 3uwc_A           84 CANTFIASVGAIVQA---GATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVE  157 (374)
T ss_dssp             ESSSCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred             CCCccHHHHHHHHHc---CCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEE
Confidence            999999998887766   99999999988888999999999999998887   788999999999999999999999999


Q ss_pred             ecccccCccccccCccc--ccEEEeccc--cccCC-CCceEEEEecC-CCCccccccccCCcccccc--CCCCchhHHHH
Q psy8850         172 DAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGP-KGIGALYIRRN-PRTRIEAQIHGGGHEYGLR--SGTLATHQIVG  243 (397)
Q Consensus       172 D~a~~~~~~~~~~~~~~--~d~~~~s~~--K~~g~-~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  243 (397)
                      |++|+.+.. ++....+  .|++++|+|  |.+++ ...|+++.+++ ....+......+.. ..+.  ..+.+. .+..
T Consensus       158 D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~  234 (374)
T 3uwc_A          158 DACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLI-NRDVCVEYGINC-RMDT  234 (374)
T ss_dssp             ECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEE-ETTEESSCCCBC-BCCH
T ss_pred             eCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCcc-ccCccccccccC-CCCH
Confidence            999997754 3322223  699999977  96555 33577776643 22223322221111 0010  011111 1122


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCc-EEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccC
Q psy8850         244 MGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEE-IYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGS  319 (397)
Q Consensus       244 l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~  319 (397)
                      +.+++... .++++++.++..++.+++.+.|.+ +++ +.+...+......+..+.+...+..++.+.|.  ||.+.++.
T Consensus       235 ~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~  313 (374)
T 3uwc_A          235 IQAVIANRLMNQLETITEKRRGIAHLYDQSFVD-LSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHY  313 (374)
T ss_dssp             HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGG-GTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCC
Confidence            22333322 235677888889999999999998 777 77654333221222223333235677888776  88888774


Q ss_pred             ccCCCCCChhhHHHhhCCCc-------cccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         320 ACTSASLEPSYVLRALGCND-------ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~-------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .... ..  ...+..++...       ....+.+|++++..+|++||++++++|++++++
T Consensus       314 ~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          314 PIAM-HL--QPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             SSCG-GG--SGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCcc-cc--ChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence            1110 00  01122222211       122378999999999999999999999998864

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.98  E-value=6.4e-30  Score=241.67  Aligned_cols=318  Identities=13%  Similarity=0.133  Sum_probs=235.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      +.++.+++++.+.+..+. .... .+...+...+...+++++++++++.+  ..+++++|++|+..++.++.    ++||
T Consensus        73 ~~~p~v~~a~~~~l~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~l~~~~----~~gd  144 (409)
T 3kki_A           73 ANHPLIKARLAKSLLEEQ-QSLF-MSASFLQNDYDKPMIEKRLAKFTGFD--ECLLSQSGWNANVGLLQTIC----QPNT  144 (409)
T ss_dssp             TTCHHHHHHHHHHHHSCC-CCCC-SBGGGGCSTTTSCHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTC
T ss_pred             cCCHHHHHHHHHHHHHcC-CCCC-ccccccCCcHHHHHHHHHHHHHhCCC--eEEEecchHHHHHHHHHHhc----CCCC
Confidence            357999999999987632 1111 22222222345678999999999987  35666777899999999887    8999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKG  166 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g  166 (397)
                      +|+++.++|+++...+...   |.+++.++.     +|+++|++++++ ++++|++++++||||.+.|+++|+++|++||
T Consensus       145 ~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~  216 (409)
T 3kki_A          145 NVYIDFFAHMSLWEGARYA---NAQAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFG  216 (409)
T ss_dssp             EEEEETTSCHHHHHHHHHT---TCEEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHT
T ss_pred             EEEECCCcCHHHHHHHHHc---CCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcC
Confidence            9999999999999888776   889888775     489999999986 5899999999999999999999999999999


Q ss_pred             cEEEEecccccCccc---------cccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850         167 VIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       167 i~livD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
                      ++||+|++|+.+...         .+. ..++|+++.|++|.+++.| |+++.+++....+......    ..+ .+..+
T Consensus       217 ~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~di~~~s~sK~~~~~g-g~v~~~~~~~~~~~~~~~~----~~~-~~~~~  289 (409)
T 3kki_A          217 CALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRA-GAIWCNNEVNRCVPFISYP----AIF-SSTLL  289 (409)
T ss_dssp             CEEEEECTTTTTTSSGGGCCHHHHHTC-GGGCSEEEEESSSTTCSSC-EEEEESSSGGGTHHHHCHH----HHH-SBCCC
T ss_pred             CEEEEECCccccccCCCCCcchhhcCC-CCCCCEEEeecchhhCCCc-eEEEECHHHHHHHHHhCcC----ccc-cCCCc
Confidence            999999999864331         111 1257899999999666654 9999987766555432111    011 12345


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC--CcE
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAIK--DIA  314 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~  314 (397)
                      ...++++.++++...+. +++.+++.++++++.+.|++ + ++.+.+     ...++++.++.. +..++.+.|.  ||.
T Consensus       290 ~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~~~Gv~  361 (409)
T 3kki_A          290 PYEAAGLETTLEIIESA-DNRRQHLDRMARKLRIGLSQ-L-GLTIRS-----ESQIIGLETGDERNTEKVRDYLESNGVF  361 (409)
T ss_dssp             HHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHT-T-TCCCCC-----SSSEEEEEEESHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCccCC-----CCCEEEEEeCCHHHHHHHHHHHHHCCce
Confidence            56666777788876543 67888999999999999998 4 554432     255667777642 2455666665  888


Q ss_pred             ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.+...+..                ..+.+++||+++..++++++++++++|++++++
T Consensus       362 v~~~~~~~~----------------~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          362 GSVFCRPAT----------------SKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             CEEECTTSS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EeeeCCCCc----------------CCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence            776432111                123489999999889999999999999998865

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.98  E-value=2e-30  Score=248.19  Aligned_cols=323  Identities=16%  Similarity=0.107  Sum_probs=230.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCCCCcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YADPREIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      ++++.|++++.+.+......+.  .+.  |.......++++.+++++    ++++++|++++|+++++.++ .++.    
T Consensus        82 ~~~~~v~~a~~~~~~~~~~~~~--~~~--y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~----  152 (449)
T 3qgu_A           82 PLPKYIADAMAKAAAGLATREG--YSG--YGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMF----  152 (449)
T ss_dssp             CCCHHHHHHHHHHHHGGGGSCC--CCC--STTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHH----
T ss_pred             CCCHHHHHHHHHHHHhhccccC--CCC--CCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHh----
Confidence            5789999999999876332111  111  122234678899999998    77778999999999999988 7776    


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhCCcE----------EEEeccCCCC--CCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLENDGFR----------VTYLKPKNNG--LITLSQLEEKICSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~----------v~~v~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~~~~tG~  151 (397)
                      ++||+|+++.++|+++...+...   |.+          ++.+|.++++  ..|++++     +++++|++++++||||.
T Consensus       153 ~~gd~Vl~~~p~~~~~~~~~~~~---g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~  224 (449)
T 3qgu_A          153 GSKPTVAVQDPSYPVYVDTSVMM---GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGA  224 (449)
T ss_dssp             CSSSCEEEEESCCTHHHHHHHHH---TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCC
T ss_pred             CCCCEEEEcCCCChhHHHHHHHc---CCcccccccccceeEEEecccccCCcCChhHc-----CCCCEEEEeCCCCCCCC
Confidence            78999999999999999888887   777          8889987543  3333321     57899999999999999


Q ss_pred             ccc---HHHHHHHHHhcCcEEEEecccccCc----cccccCc----ccccEEEeccccccCCCC--ceEEEEecCCCCc-
Q psy8850         152 IQP---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR-  217 (397)
Q Consensus       152 ~~~---l~~i~~l~~~~gi~livD~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~-  217 (397)
                      ++|   +++|+++|++||+++|+|++|+...    .+..+..    .+.++++.|++|.+|..|  +|+++++++.... 
T Consensus       225 ~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~  304 (449)
T 3qgu_A          225 AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYAN  304 (449)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTT
T ss_pred             cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhh
Confidence            998   6788888999999999999998522    1222222    256799999999665334  7999998776552 


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEE
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI  296 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  296 (397)
                      ................++.+.....+..++++. ..+.++++.+++.++++++.+.|++ + ++.+..+..   +.++++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~  379 (449)
T 3qgu_A          305 GEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE-M-GFSVYGGDD---APYIWV  379 (449)
T ss_dssp             SCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEEESSS---SSEEEE
T ss_pred             hhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCC---eeEEEE
Confidence            000000000001112224455555555566654 3346788899999999999999998 4 666665433   456677


Q ss_pred             EecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         297 SFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       297 ~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      .+++.+..++.+.|.   ||.+.+|..|.+                 .+.++|||++..  +++++++++++|+++++
T Consensus       380 ~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~-----------------~~~~~iRis~~~--~~e~i~~~l~~l~~~~~  438 (449)
T 3qgu_A          380 GFPGKPSWDVFAEILERCNIVTTPGSGYGP-----------------AGEGFVRASAFG--SRENILEAVRRFKEAYG  438 (449)
T ss_dssp             ECTTSCHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHC
T ss_pred             ECCCCCHHHHHHHHHHHCCEEEecchHhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence            777566777776664   899999876654                 124899999754  89999999999988763

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.97  E-value=1.6e-29  Score=242.56  Aligned_cols=313  Identities=14%  Similarity=0.113  Sum_probs=229.6

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCC---------cEEEeCChhHHHHHHHHHhHhhhc---------------cCCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPR---------EIIWTSGATESNNLAIKGAAHFYK---------------KRGK   87 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~---------~i~~~~g~t~a~~~~l~~l~~~~~---------------~~g~   87 (397)
                      .+..++...+...++.+++++++|.+.+         .+++|+|||+|+..++.+......               .+++
T Consensus       104 ~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~  183 (475)
T 3k40_A          104 TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL  183 (475)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred             CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence            3445566677888899999999999753         589999999999988887653221               1346


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC------ceEEEEecccCcccccccHHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGEL  161 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~i~~l  161 (397)
                      +|+++..+|.++..++...   |.+++.+|+++++ +|+++|+++|+++      +.+|++++++|++|.+.|+++|+++
T Consensus       184 ~vi~s~~~H~s~~~~~~~~---g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~l  259 (475)
T 3k40_A          184 VGYCSDQAHSSVERAGLLG---GVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPV  259 (475)
T ss_dssp             EEEEETTSCHHHHHHHHHH---TCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred             EEEECCCchHHHHHHHHHc---CCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHH
Confidence            8999999999999998877   9999999999889 9999999999764      6788999999999999999999999


Q ss_pred             HHhcCcEEEEecccccCcccc-cc----Ccc-cccEEEecccc-ccCCCCceEEEEecCCC-Cc-c---ccccccCCc--
Q psy8850         162 CRSKGVIFHCDAAQAVGKIDI-NI----QNY-KVDLMSFSAHK-IYGPKGIGALYIRRNPR-TR-I---EAQIHGGGH--  227 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~~~-~~----~~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~~~-~~-~---~~~~~~~~~--  227 (397)
                      |++||+++|+|++|+.+.... ..    ..+ .+|++++|+|| +++|.|+|+++++++.. .. +   ..++.....  
T Consensus       260 a~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~  339 (475)
T 3k40_A          260 GNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS  339 (475)
T ss_dssp             HHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC------------------
T ss_pred             HHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCC
Confidence            999999999999998764321 11    111 46999999999 77888999999986532 11 1   111111000  


Q ss_pred             -----cccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC
Q psy8850         228 -----EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI  301 (397)
Q Consensus       228 -----~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (397)
                           ...... +.+ ...+++.+++..+ .++++++.++..++++++.+.|++ ++++.+..++.   .+++.|.+++.
T Consensus       340 ~~~~~~~~~~~-sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~l~~~~~---~~iv~f~~~~~  413 (475)
T 3k40_A          340 APDYRHWQIPL-GRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVA-DSRFELAAEIN---MGLVCFRLKGS  413 (475)
T ss_dssp             ---------CC-CGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTEEESSCCB---TTEEEEEESSC
T ss_pred             CCCcccccccC-CCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecCCc---eEEEEEEeCCc
Confidence                 001111 111 2455666677655 457899999999999999999999 89999887643   46677777542


Q ss_pred             C--hHHHHHHhC--Cc-EecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHHH
Q psy8850         302 E--GESLLMAIK--DI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       302 ~--~~~~~~~l~--~i-~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +  ..++.+.|.  |. .+.++.                    ..+..++|+++... ++++||++++++|+++.+++.
T Consensus       414 ~~~~~~l~~~L~~~g~~~~~~~~--------------------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~  472 (475)
T 3k40_A          414 NERNEALLKRINGRGHIHLVPAK--------------------IKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME  472 (475)
T ss_dssp             HHHHHHHHHHHHHHTSCBCEEEE--------------------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCcEEEEeeE--------------------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            2  356666665  33 333221                    11237899998744 689999999999999988764

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.97  E-value=6.4e-30  Score=242.81  Aligned_cols=299  Identities=13%  Similarity=0.078  Sum_probs=219.9

Q ss_pred             HHHHHHHHHHHHHhCCCC---------CcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCc
Q psy8850          41 KAIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGF  111 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~---------~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~  111 (397)
                      +..+.+.+.+++.+|.+.         ++|++|+|+++|+.+++.++.    ++||+|++..|+|+++...+...   |.
T Consensus        82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~  154 (425)
T 2r2n_A           82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII----NPGDNVLLDEPAYSGTLQSLHPL---GC  154 (425)
T ss_dssp             HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHGGG---TC
T ss_pred             HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CC
Confidence            445556666666678753         589999999999999999987    78999999999999988776655   99


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhc------------CCceEEEE-ecccCcccccccHH---HHHHHHHhcCcEEEEeccc
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKIC------------SDTILVSV-MLVNNEIGVIQPIL---EIGELCRSKGVIFHCDAAQ  175 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~------------~~~~~v~~-~~~~~~tG~~~~l~---~i~~l~~~~gi~livD~a~  175 (397)
                      +++.+|.++++ +|+++|+++++            +++++|++ ++++||||.++|.+   +|+++|++||++||+|++|
T Consensus       155 ~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~  233 (425)
T 2r2n_A          155 NIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPY  233 (425)
T ss_dssp             EEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             EEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence            99999987655 89999999987            35788866 78999999999865   8999999999999999999


Q ss_pred             cc----CccccccCc---ccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHH
Q psy8850         176 AV----GKIDINIQN---YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGE  246 (397)
Q Consensus       176 ~~----~~~~~~~~~---~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  246 (397)
                      +.    +....++..   .+.++++.|++|.++ +|  +|+++++++....+......       ...+.+.....++.+
T Consensus       234 ~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~-------~~~~~~~~~q~a~~~  305 (425)
T 2r2n_A          234 YFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQV-------STLHPSTFNQLMISQ  305 (425)
T ss_dssp             GGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHT-------TTCSSCHHHHHHHHH
T ss_pred             ccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHH-------hcCCCCHHHHHHHHH
Confidence            73    221222222   245688999999666 45  79999997655554433211       123455566666667


Q ss_pred             HHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhcCcE-EEeCCCCCCCCceEEEEecC-CChHH-HHHHhC--CcEec
Q psy8850         247 AFRLA-----RIEMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF-IEGES-LLMAIK--DIAVS  316 (397)
Q Consensus       247 al~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~--~i~~~  316 (397)
                      +++.+     .+++++..++++++++++.+.|++.++++ .+..+..   +.++++.++. .+..+ +...+.  ||.+.
T Consensus       306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~  382 (425)
T 2r2n_A          306 LLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAA---GMFLWIKVKGINDVKELIEEKAVKMGVLML  382 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSB---SSEEEEEETTCSCCHHHHHTHHHHTTEECE
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCc---eEEEEEEeCCCCCHHHHHHHHHHHCCcEEe
Confidence            77653     24577788899999999999998855675 3443322   4567777764 34445 355554  99999


Q ss_pred             ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +|..|...              .....+++||+++. .+++++++++++|++++++.
T Consensus       383 pg~~f~~~--------------~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          383 PGNAFYVD--------------SSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             EGGGGSSS--------------TTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcCC--------------CCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence            99766541              01123789999984 58999999999999988653

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.97  E-value=1.8e-30  Score=244.27  Aligned_cols=308  Identities=13%  Similarity=0.091  Sum_probs=220.2

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      |.+++...+...++++.+++++|.+  +.++++||++|+++++.++.    ++||+|+++.+.|+++...+.. +...|+
T Consensus        74 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssGt~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~  147 (415)
T 2fq6_A           74 LFYGRRGTLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGV  147 (415)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             ccccCCCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            4445555667889999999999986  56677899999999999887    7999999999999999887754 344599


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh--cCcEEEEecccccCccccccCcccc
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKV  189 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~--~gi~livD~a~~~~~~~~~~~~~~~  189 (397)
                      +++.++.+     |+++++++++++|++|++++++||+|.+.|+++|+++|++  +|+++|+|++|+.+.....+ .+++
T Consensus       148 ~v~~v~~~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~  221 (415)
T 2fq6_A          148 TTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGI  221 (415)
T ss_dssp             EEEEECTT-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTC
T ss_pred             EEEEECCC-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCC
Confidence            99999865     8999999999999999999999999999999999999999  99999999999855322112 3579


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       190 d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      |++++|+||++|+.|   .|+++.+++..+.+......       ..+..+....+.+..+++    .+..+.++..+++
T Consensus       222 Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~-------~G~~~~~~~a~~~~~~l~----~l~~r~~~~~~n~  290 (415)
T 2fq6_A          222 DVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYL-------MGQMVDADTAYITSRGLR----TLGVRLRQHHESS  290 (415)
T ss_dssp             SEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHH-------TTCCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred             eEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhhh----HHHHHHHHHHHHH
Confidence            999999999666555   69998887654443322110       011222222222223333    3345566677788


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC----ChHHHHHHhC--CcEecccCccCCCCC
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI----EGESLLMAIK--DIAVSSGSACTSASL  326 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~----~~~~~~~~l~--~i~~~~g~~~~~~~~  326 (397)
                      ..+.+.|++ .+.+..+..+.              ...++++.|.+++.    +...+...++  ++.++.|+.|+....
T Consensus       291 ~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~  369 (415)
T 2fq6_A          291 LKVAEWLAE-HPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILA  369 (415)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEE
T ss_pred             HHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEe
Confidence            888888888 66554321111              12467889998762    2345555554  577788877765321


Q ss_pred             -Ch---hhHH--HhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         327 -EP---SYVL--RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       327 -~~---~~~~--~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                       .|   +..+  +.+|+.    ++.||+|++..+++++|+.+.++|++
T Consensus       370 ~~p~~~s~~~~~~~~g~~----~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          370 NQPEHIAAIRPQGEIDFS----GTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             ECHHHHHTTCTTCCCCCC----SCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             cCCCccccccchhhcCCC----CCEEEEEecCCCHHHHHHHHHHHHHh
Confidence             01   1111  123433    48999999999999999999998874

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.97  E-value=8.5e-31  Score=244.62  Aligned_cols=332  Identities=15%  Similarity=0.121  Sum_probs=227.4

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCCE
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGKH   88 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~~   88 (397)
                      ++++++++.+.+....       +    ...+...++++.++++++.+  ++++++|||+|+.+++.++ .    ++||+
T Consensus        16 ~~~~~~a~~~~~~~~~-------~----~~~~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~----~~gd~   78 (373)
T 3frk_A           16 EYEIKFKFEEIYKRNW-------F----ILGDEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDI----GFGDE   78 (373)
T ss_dssp             HHHHHHHHHHHHHHTC-------C----SSSHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTC----CTTCE
T ss_pred             CHHHHHHHHHHHHCCC-------c----cCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC----CCcCE
Confidence            4667777777765521       1    12346889999999999986  7999999999999999988 5    78999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCc
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV  167 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi  167 (397)
                      |+++.++|+++...+...   |.+++.++.+ +++.+|++++++++++++++|+   ++||+|.+.|+++|.++|++||+
T Consensus        79 Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~  152 (373)
T 3frk_A           79 VIVPSNTFIATALAVSYT---GAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNL  152 (373)
T ss_dssp             EEEETTSCTHHHHHHHHH---SCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTC
T ss_pred             EEECCCCcHHHHHHHHHc---CCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCC
Confidence            999999999999888777   9999999998 5788999999999999999888   56789999999999999999999


Q ss_pred             EEEEecccccCccccccCccc--ccEEEeccc--cccCC-CCceEEEEecC-CCCccccccccCCccc--cccCCCCchh
Q psy8850         168 IFHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGP-KGIGALYIRRN-PRTRIEAQIHGGGHEY--GLRSGTLATH  239 (397)
Q Consensus       168 ~livD~a~~~~~~~~~~~~~~--~d~~~~s~~--K~~g~-~g~g~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~  239 (397)
                      ++|+|++|+.|.. ++...++  .|++++|++  |.+|+ ...|+++.+++ ....+.....++....  ....+. + .
T Consensus       153 ~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~-~  229 (373)
T 3frk_A          153 KLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGF-N-S  229 (373)
T ss_dssp             EEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCC-B-C
T ss_pred             EEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCccccccc-c-C
Confidence            9999999998765 4444444  789999965  95555 33577777643 3333333332221100  011111 1 0


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEec
Q psy8850         240 QIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVS  316 (397)
Q Consensus       240 ~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~  316 (397)
                      .+..+.+++... .++++++.++.+++.+++.+.|++ ++ +.+...+......+..+.+...+..++.+.|.  ||.+.
T Consensus       230 ~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~  307 (373)
T 3frk_A          230 RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINN-PN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTL  307 (373)
T ss_dssp             CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCC-TT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCB
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCcc
Confidence            112222333322 235677888889999999999988 66 65543322211222222333235778888886  88887


Q ss_pred             ccCccCCCCCChhhHHHhhCCCc-------cccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         317 SGSACTSASLEPSYVLRALGCND-------ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       317 ~g~~~~~~~~~~~~~~~~~g~~~-------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ++... +.  .....+..++...       ....+.||+++...+|++|||+++++|+++..+
T Consensus       308 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~  367 (373)
T 3frk_A          308 IHYPI-PI--HLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE  367 (373)
T ss_dssp             CSCSS-CG--GGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred             cCcCC-cc--ccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence            65311 10  0011223333221       122378999999999999999999999876543

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.97  E-value=2.3e-31  Score=251.19  Aligned_cols=340  Identities=17%  Similarity=0.165  Sum_probs=241.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      |+++..+.|+.+++++.+.+...+  +++.+..+.......+....+++++++++|.+++ .+++++|++|+.+++.++.
T Consensus        28 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~-~i~~~sGt~a~~~a~~~~~  106 (405)
T 2vi8_A           28 LIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA-NVQPHSGAQANMAVYFTVL  106 (405)
T ss_dssp             CCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHHHC
T ss_pred             eccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce-EEEecCcHHHHHHHHHHhc
Confidence            566777889999999998885322  2333211211223334455588999999999854 3444555999999999886


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHH---HHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCccccccc
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSI---RKLENDGFRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~---~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~  154 (397)
                          ++||+|+++.++|+++....   ...+ .+.++..++.+ .++.+|++++++++++ ++++|+++ +++ .|...+
T Consensus       107 ----~~gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~~-~~~~~~  179 (405)
T 2vi8_A          107 ----EHGDTVLGMNLSHGGHLTHGSPVNFSG-VQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAA-AAA-YPRIID  179 (405)
T ss_dssp             ----CTTCEEEEECGGGTCCTTTTCTTSHHH-HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC-CSS-CCSCCC
T ss_pred             ----CCCCEEEEecccccchhcccchhhhcc-ceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEe-CCC-CCccCC
Confidence                78999999999998875321   1221 13478888876 5678999999999986 88888874 333 367778


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCccccccCcc---cccEEEeccccc-cCCCCceEEEEecCCCCccccccccCCcccc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~---~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +++|.++|++||+++|+|++|+.+....+....   .+|++++|+||. .|+.| |+++++++..+.+......      
T Consensus       180 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~~------  252 (405)
T 2vi8_A          180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFP------  252 (405)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhcc------
Confidence            999999999999999999999855432222111   578999999995 45877 9999986655444433211      


Q ss_pred             ccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLL  307 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  307 (397)
                      +..++++..+++++.++++... .+++++.+++.++++++.+.|++ + ++.+..+..  .+.++++.++.  .+..++.
T Consensus       253 ~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  328 (405)
T 2vi8_A          253 GIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN-E-GFTLVSGGT--DNHLLLVDLRPQQLTGKTAE  328 (405)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGGGTCCHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-C-CCeEecCCC--CceEEEEEccCCCCCHHHHH
Confidence            2345667778888878888765 47888999999999999999999 5 777765422  25567777763  3567777


Q ss_pred             HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC----CCCHHHHHHHHHHHHHHHHHH
Q psy8850         308 MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       308 ~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~----~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.|.  ||.+.+|..+..             .......+++|++++.    .++++++++++++|+++++++
T Consensus       329 ~~l~~~gi~v~~g~~~~~-------------~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          329 KVLDEVGITVNKNTIPYD-------------PESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             HHHHHHTEECEEECCTTC-------------SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHcCceeccCcCccc-------------cCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence            7776  999988753210             0001123679999985    468999999999999987654

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.97  E-value=3e-29  Score=237.03  Aligned_cols=310  Identities=12%  Similarity=0.098  Sum_probs=219.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV  113 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v  113 (397)
                      ++....+...++++.++++++.+  ++++++||++|+.+++.++.    ++||+|+++.++|+++...+.. +...|.++
T Consensus        50 y~~~~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~  123 (412)
T 2cb1_A           50 YARQKDPTAKALEERLKALEGAL--EAVVLASGQAATFAALLALL----RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTV  123 (412)
T ss_dssp             BTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTCCHHHHHHHHHTTTTTTCEE
T ss_pred             cCCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCCEE
Confidence            33334467899999999999986  79999999999999999886    7899999999999998887765 34459999


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS  193 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~  193 (397)
                      +.++.+      ++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++|+.+.........+.|+++
T Consensus       124 ~~~~~~------~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~  197 (412)
T 2cb1_A          124 RYVDPE------PEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVV  197 (412)
T ss_dssp             EEECSS------HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEE
T ss_pred             EEECCC------HHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEE
Confidence            999864      89999999999999999999999999999999999999999999999999977322222345799999


Q ss_pred             ecccc-ccCCCC-ceEEEEecCCCC-----ccc-cccccC---------Ccccc------ccCC-CCchhHHHHHHHHHH
Q psy8850         194 FSAHK-IYGPKG-IGALYIRRNPRT-----RIE-AQIHGG---------GHEYG------LRSG-TLATHQIVGMGEAFR  249 (397)
Q Consensus       194 ~s~~K-~~g~~g-~g~~~~~~~~~~-----~~~-~~~~~~---------~~~~~------~~~~-~~~~~~~~~l~~al~  249 (397)
                      +|+|| +.++.+ +|++++.++...     .+. +...++         .....      ...| ..+....+.....++
T Consensus       198 ~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~  277 (412)
T 2cb1_A          198 ESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE  277 (412)
T ss_dssp             EETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG
T ss_pred             ECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc
Confidence            99999 445544 677777653211     010 000000         00000      0011 111122222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCChHHHHHHhC--Cc
Q psy8850         250 LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIEGESLLMAIK--DI  313 (397)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~--~i  313 (397)
                          .+..+.++..++.+++.+.|.+ .+++.++..+.              ...++++.|.+ + +...+...+.  ++
T Consensus       278 ----~l~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~~~~~~~l~~~~i  350 (412)
T 2cb1_A          278 ----TVALRVARMSETARFLAERLQG-HPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-DLERASRFLGAIRL  350 (412)
T ss_dssp             ----GHHHHHHHHHHHHHHHHHHHHT-CTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-SHHHHHHHHHHCSS
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-CHHHHHHHHHhCCe
Confidence                2345566677889999999988 77876442111              13467888888 5 6666666664  88


Q ss_pred             EecccC---------ccCCCCC--ChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         314 AVSSGS---------ACTSASL--EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       314 ~~~~g~---------~~~~~~~--~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      .+ .++         .|.....  -++..+..+|+..    +.||+|++.++++++|+.++++|++
T Consensus       351 ~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~----~~iR~s~g~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          351 LK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTP----GLVRVSVGLEDPLDLLALFEEALEA  411 (412)
T ss_dssp             EE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred             ee-ecccCCCcceeecCcccccccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHhh
Confidence            88 763         4433221  2345667777763    8999999999999999999999864

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.97  E-value=1e-28  Score=237.68  Aligned_cols=314  Identities=14%  Similarity=0.108  Sum_probs=230.8

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCC----------cEEEeCChhHHHHHHHHHhHhhhc---------------cCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPR----------EIIWTSGATESNNLAIKGAAHFYK---------------KRG   86 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~i~~~~g~t~a~~~~l~~l~~~~~---------------~~g   86 (397)
                      .+..++...+...++.+++++++|.+.+          ..++|+|||+|+..++.+......               .++
T Consensus       109 ~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~  188 (481)
T 4e1o_A          109 TWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNAR  188 (481)
T ss_dssp             STTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTT
T ss_pred             CcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCC
Confidence            3445566678888899999999998753          579999999999999887654211               256


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC------ceEEEEecccCcccccccHHHHHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                      ++|+++..+|.++..++...   |.+++.+|.++++.+|+++|+++|+++      +.+|++++++|++|.+.|+++|++
T Consensus       189 ~~v~~s~~~H~s~~~~~~~~---g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~  265 (481)
T 4e1o_A          189 LVAYASDQAHSSVEKAGLIS---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP  265 (481)
T ss_dssp             EEEEEETTSCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred             eEEEEcCcchHHHHHHHHhC---CCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHH
Confidence            79999999999999998766   899999999989999999999999764      778999999999999999999999


Q ss_pred             HHHhcCcEEEEecccccCcccc-cc----Ccc-cccEEEecccc-ccCCCCceEEEEecCCC--Ccc---ccccccCCc-
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDI-NI----QNY-KVDLMSFSAHK-IYGPKGIGALYIRRNPR--TRI---EAQIHGGGH-  227 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~-~~----~~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~~~--~~~---~~~~~~~~~-  227 (397)
                      +|++||+++|+|++|+.+.... ..    ..+ .+|++++++|| +++|.|+|+++++++..  ..+   ..++..... 
T Consensus       266 la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~  345 (481)
T 4e1o_A          266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSG  345 (481)
T ss_dssp             HHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTT
T ss_pred             HHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccC
Confidence            9999999999999998764311 11    111 35999999999 77788999999986421  111   111111100 


Q ss_pred             ------cccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC
Q psy8850         228 ------EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF  300 (397)
Q Consensus       228 ------~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (397)
                            ...... +.. ...+++.+++..+ .++++++.++..++++++.+.|++ ++++.+..++.   ..++.|.+++
T Consensus       346 ~~~~~~~~~~~~-~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~~~~~~---~~~v~f~~~~  419 (481)
T 4e1o_A          346 VATDFMHWQIPL-SRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRN-DPSFEIPAKRH---LGLVVFRLKG  419 (481)
T ss_dssp             TSCCGGGGSSSS-CCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEECCSCCC---SSEEEEEESS
T ss_pred             CCCCcccccccC-CCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCc---eeEEEEEeCC
Confidence                  001111 111 2345555666654 457899999999999999999999 88998876543   4566777754


Q ss_pred             CC--hHHHHHHhC--C-cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHHH
Q psy8850         301 IE--GESLLMAIK--D-IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       301 ~~--~~~~~~~l~--~-i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      .+  ..++.+.|.  | +.+.++.                    ..+..++|+++... ++++||++++++|+++.+++.
T Consensus       420 ~~~~~~~l~~~L~~~g~~~~~~~~--------------------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~  479 (481)
T 4e1o_A          420 PNSLTENVLKEIAKAGRLFLIPAT--------------------IQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL  479 (481)
T ss_dssp             CHHHHHHHHHHHHHHCSSBCEEEE--------------------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhCCeEEEEeeE--------------------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            22  345666664  4 3333221                    11236899998754 589999999999999987754

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.97  E-value=4.7e-30  Score=242.96  Aligned_cols=309  Identities=16%  Similarity=0.123  Sum_probs=228.0

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g  110 (397)
                      .|.+++...+...++++.+++++|.+  ..+++++|++|+.+++.++.    ++||+|+++.+.|+++...+.. +...|
T Consensus       105 ~~~y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G  178 (445)
T 1qgn_A          105 SFEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMG  178 (445)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred             CccccCCCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence            45555555678899999999999986  44555666699999999887    7899999999999998876653 34459


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCc-eEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDT-ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV  189 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~-~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~  189 (397)
                      .+++.++.+     |++++++++++++ ++|++++++||+|.+.|+++|+++|++||+++|+|++|+.+... ....+++
T Consensus       179 ~~v~~v~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~  252 (445)
T 1qgn_A          179 ITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGA  252 (445)
T ss_dssp             CEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTC
T ss_pred             CEEEEeCCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCC
Confidence            999999875     8999999999999 99999999999999999999999999999999999999866533 2234589


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       190 d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      |+++.|+||++|+.|   +|+++++++....+......       ..+.++....+.+..+++.    +..+.++..+++
T Consensus       253 Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~-------~g~~~~~~~a~~~~~~l~~----l~~r~~~~~~~a  321 (445)
T 1qgn_A          253 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI-------LGGALNPNAAYLIIRGMKT----LHLRVQQQNSTA  321 (445)
T ss_dssp             SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHGGG----HHHHHHHHHHHH
T ss_pred             EEEEECCcccccccccceEEEEEECHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHhHHH----HHHHHHHHHHHH
Confidence            999999999777666   89999987654444322110       1122333333333334443    334456667778


Q ss_pred             HHHHHHHhhhcCcE-EEeCCCC-------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCCCC---
Q psy8850         267 KRLYNGLMESIEEI-YINGDMN-------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTSAS---  325 (397)
Q Consensus       267 ~~l~~~l~~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~~~---  325 (397)
                      +++.+.|++ .+++ .+..+..             ...++++.|.+++.  +...+...++  ++.++.|..|+...   
T Consensus       322 ~~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~  400 (445)
T 1qgn_A          322 LRMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPA  400 (445)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHH
T ss_pred             HHHHHHHhc-CCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeeccc
Confidence            889999988 7777 4443310             12467888988753  2456777776  78888888876421   


Q ss_pred             -----CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         326 -----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       326 -----~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                           ..++..+..+|+.+    +.||||++.    ||+|.+++.|+++++.
T Consensus       401 ~~~h~~~~~~~~~~~g~~~----~~iRlSvG~----Edid~li~~L~~al~~  444 (445)
T 1qgn_A          401 IMSYWDLSQSDRAKYGIMD----NLVRFSFGV----EDFDDLKADILQALDS  444 (445)
T ss_dssp             HHHSTTSCHHHHHTTTCCS----SEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence                 11334566777764    899999983    6899999999998864

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.97  E-value=1.4e-29  Score=244.91  Aligned_cols=330  Identities=15%  Similarity=0.086  Sum_probs=227.2

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      .|+.++++..+.+....+.... .|.......+....+.+.+.+..|  +++++|++|+|+++|+.+++.++..   ++|
T Consensus       107 ~p~~~~~~a~~~l~~~~~~~~~-~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~~g  182 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGRATG-AYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR---NEK  182 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTSCSS-SCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC---STT
T ss_pred             CCHHHHHHHHHHHHcCCCCcCC-CcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC---CCC
Confidence            4666777777776653211111 233322223334444444444445  5677899999999999999998752   478


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhcC------CceEEEEecccCccccccc---H
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l  155 (397)
                      |+|+++.|+|+++...+...   |.+++.++++++  +.+|+++|++++++      ++++|++++++||||.+++   +
T Consensus       183 d~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l  259 (500)
T 3tcm_A          183 DGILVPIPQYPLYSASIALH---GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQ  259 (500)
T ss_dssp             EEEEEEESCCTHHHHHHHHT---TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHH
T ss_pred             CEEEEeCCCcHhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHH
Confidence            99999999999999888877   999999998754  47999999999986      7899999999999999988   4


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc-----ccccC----cc-----c-ccEEEecccccc-CCCC--ceEEEE---ecCC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI-----DINIQ----NY-----K-VDLMSFSAHKIY-GPKG--IGALYI---RRNP  214 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~----~~-----~-~d~~~~s~~K~~-g~~g--~g~~~~---~~~~  214 (397)
                      ++|+++|++||+++|+|++|+....     ..++.    .+     + ..+++.|+||.+ |..|  +|++++   +++.
T Consensus       260 ~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~  339 (500)
T 3tcm_A          260 YDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPV  339 (500)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTH
T ss_pred             HHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHH
Confidence            5677779999999999999984322     11111    01     1 236678999944 5444  688888   5444


Q ss_pred             CCccccccccCCccccccCCCCchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850         215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR----------LARIEMKEELKRILFLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  284 (397)
                      .+.+.....        ...+++.....++..+++          .+.+....+.+++.++++++.+.|++ ++++.+..
T Consensus       340 ~~~l~~~~~--------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~  410 (500)
T 3tcm_A          340 REQIYKIAS--------VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK-LEGITCNE  410 (500)
T ss_dssp             HHHHHHHHH--------TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEECCC
T ss_pred             HHHHHHHHh--------cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEec
Confidence            444332211        123456666666656664          24456778889999999999999999 78988775


Q ss_pred             CCCCCCCceEE--EEecC----------CChH-HHH-HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEE
Q psy8850         285 DMNNRIPHNLN--ISFNF----------IEGE-SLL-MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF  348 (397)
Q Consensus       285 ~~~~~~~~~~~--~~~~~----------~~~~-~~~-~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi  348 (397)
                      +.+   +.+++  +.++.          .... .+. ..|.  ||.+.+|..|...                .+..+||+
T Consensus       411 ~~g---~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~----------------~g~~~iRi  471 (500)
T 3tcm_A          411 AEG---AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQV----------------PGTWHFRC  471 (500)
T ss_dssp             CCB---TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCC----------------TTCCBEEE
T ss_pred             CCe---EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCCCEEEE
Confidence            543   22323  22221          1112 222 3343  9999999877630                12368999


Q ss_pred             eeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         349 TIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       349 ~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ++.  ++++++++++++|.++++++.+
T Consensus       472 s~~--~~~e~i~~~i~~l~~~~~~~~~  496 (500)
T 3tcm_A          472 TIL--PQEDKIPAVISRFTVFHEAFMS  496 (500)
T ss_dssp             ESC--SCTTTHHHHHHHHHHHHHHHHH
T ss_pred             EEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence            999  6899999999999999988765

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.97  E-value=3.8e-30  Score=241.50  Aligned_cols=330  Identities=13%  Similarity=0.091  Sum_probs=227.8

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCCEE
Q psy8850          11 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGKHI   89 (397)
Q Consensus        11 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~~v   89 (397)
                      +++++++.+.+....       +  ++...+...++++.++++++.+ +.|+++ +||+|+++++.++ .    ++|++|
T Consensus        17 ~~~~~a~~~~l~~~~-------~--~~~~~~~~~~l~~~la~~~~~~-~~i~~~-sGt~al~~~l~~l~~----~~gd~V   81 (388)
T 1b9h_A           17 DAERNGLVRALEQGQ-------W--WRMGGDEVNSFEREFAAHHGAA-HALAVT-NGTHALELALQVMGV----GPGTEV   81 (388)
T ss_dssp             HHHHHHHHHHHHTSC-------C--BTTTCSHHHHHHHHHHHHTTCS-EEEEES-CHHHHHHHHHHHTTC----CTTCEE
T ss_pred             HHHHHHHHHHHHcCC-------e--eecCCHHHHHHHHHHHHHhCCC-eEEEeC-CHHHHHHHHHHHcCC----CCcCEE
Confidence            899999999887510       1  1122346788999999999987 445555 5599999999988 5    789999


Q ss_pred             EEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcE
Q psy8850          90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI  168 (397)
Q Consensus        90 l~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~  168 (397)
                      +++.++|+++...+...   |.+++.++.++ ++.+|+++|++++++++++|+   ++||||.+.|+++|.++|++||++
T Consensus        82 i~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~  155 (388)
T 1b9h_A           82 IVPAFTFISSSQAAQRL---GAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVP  155 (388)
T ss_dssp             EEESSSCTHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCC
T ss_pred             EECCCccHHHHHHHHHc---CCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCE
Confidence            99999999998887666   99999999985 478999999999998888887   789999999999999999999999


Q ss_pred             EEEecccccCccc--cccCcccccEEEec--ccc-ccCCCCceEEEEecCCC---CccccccccCCc--ccc---ccCCC
Q psy8850         169 FHCDAAQAVGKID--INIQNYKVDLMSFS--AHK-IYGPKGIGALYIRRNPR---TRIEAQIHGGGH--EYG---LRSGT  235 (397)
Q Consensus       169 livD~a~~~~~~~--~~~~~~~~d~~~~s--~~K-~~g~~g~g~~~~~~~~~---~~~~~~~~~~~~--~~~---~~~~~  235 (397)
                      ||+|++|+.|...  .++..++ |+.++|  .+| +.|+ .+|+++.+++..   ..+......+..  ...   ...|+
T Consensus       156 li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  233 (388)
T 1b9h_A          156 LLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGS  233 (388)
T ss_dssp             BCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCC
T ss_pred             EEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccc
Confidence            9999999976543  2333333 455555  557 4454 468888886533   222211111100  000   11222


Q ss_pred             ---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---CCCCceEEEEecCC---ChHHH
Q psy8850         236 ---LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---NRIPHNLNISFNFI---EGESL  306 (397)
Q Consensus       236 ---~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~  306 (397)
                         ++....+++...+    +.+++..++++++++++.+.|++ ++++.+..+..   ...++++++.+++.   +..++
T Consensus       234 ~~~~~~~~~a~~~~~~----~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (388)
T 1b9h_A          234 NMRLNEFSASVLRAQL----ARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNAL  308 (388)
T ss_dssp             BCBCBHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCcCCCccceEEEEEEeCCcCcccHHHH
Confidence               3333333332322    24556778888899999999998 88887765322   12256778888754   45667


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCC--------------CccccCceEEEeeCCCC-CHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGC--------------NDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMK  369 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~--------------~~~~~~~~iRi~~~~~~-~~~~i~~~~~~l~~~  369 (397)
                      .+.|.  ||.+..+..  +....  ..+...|.              ......+.|||+++..+ |++||+++++.|+++
T Consensus       309 ~~~L~~~gI~v~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~  384 (388)
T 1b9h_A          309 VDRLVEAGLPAFAAFR--AIYRT--DAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADA  384 (388)
T ss_dssp             HHHHHHTTCCEEECCC--CGGGS--HHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCcccccC--ccccC--hHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence            77775  888877642  21000  11111221              11223468999999989 999999999999998


Q ss_pred             HHH
Q psy8850         370 VKK  372 (397)
Q Consensus       370 ~~~  372 (397)
                      +++
T Consensus       385 ~~~  387 (388)
T 1b9h_A          385 VAR  387 (388)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            754

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.97  E-value=1e-30  Score=248.55  Aligned_cols=292  Identities=17%  Similarity=0.177  Sum_probs=213.6

Q ss_pred             HHHHHHHHHHHhC--------CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEE
Q psy8850          43 IEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT  114 (397)
Q Consensus        43 ~~~~~~~la~~~~--------~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~  114 (397)
                      ..++++.++++++        +++++|++++|+++++.+++.++.    ++||+|+++.++|+++...+.  ...|.+++
T Consensus        85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~--~~~g~~~~  158 (428)
T 1iay_A           85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLR--WRTGVQLI  158 (428)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTT--TTTCCEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC----CCCCeEEEccCCCcchHHHHH--HhcCCEEE
Confidence            4667777777776        667899999999999999999887    789999999999999875432  12389999


Q ss_pred             EeccCC--CCCCCHHHHHHHhcC------CceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc---
Q psy8850         115 YLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---  180 (397)
Q Consensus       115 ~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~---  180 (397)
                      .+|.+.  ++.+|++++++++++      ++++|++++++||||.++|   +++|+++|++||+++|+|++|+.+..   
T Consensus       159 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~  238 (428)
T 1iay_A          159 PIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP  238 (428)
T ss_dssp             EECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred             EeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC
Confidence            999873  346899999999864      7899999999999999999   88999999999999999999985221   


Q ss_pred             -ccccCc---------cccc--EEEeccccccCCCC--ceEEEEe-cCCCCccccccccCCccccccCCCCchhHHHHHH
Q psy8850         181 -DINIQN---------YKVD--LMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG  245 (397)
Q Consensus       181 -~~~~~~---------~~~d--~~~~s~~K~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (397)
                       ..++..         ++.|  +++.|+||.+|.+|  +|+++++ ++....+....         ...+.+.....++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~  309 (428)
T 1iay_A          239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS---------SFGLVSTQTQYFLA  309 (428)
T ss_dssp             CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH---------TTSCCCHHHHHHHH
T ss_pred             CccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHH---------hcccCCHHHHHHHH
Confidence             111111         1156  88999999766555  5999884 43333333211         01233445555555


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-------ChHHHHHHh--C-C
Q psy8850         246 EAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI--K-D  312 (397)
Q Consensus       246 ~al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l--~-~  312 (397)
                      ++++.   ..+++++..+++.++++++.+.|++ + ++.+..+..   +.++++.++..       +..++.+.|  + |
T Consensus       310 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g  384 (428)
T 1iay_A          310 AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-V-GIKCLKNNA---GLFCWMDLRPLLRESTFDSEMSLWRVIINDVK  384 (428)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBCCCSS---SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSC
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcccCCCe---eEEEEEechhhcCCCchhHHHHHHHHHHHhCC
Confidence            56653   2345778889999999999999998 5 665543322   45667777642       234566666  3 8


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      |.+.+|..|...                 ..+++||+++ ..+++++++++++|++++++
T Consensus       385 i~v~~~~~~~~~-----------------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          385 LNVSPGSSFECQ-----------------EPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             EECEEGGGGTCS-----------------SSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             EEEeCchhhCCC-----------------CCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence            999888655430                 1378999998 47999999999999998754

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.97  E-value=5.3e-29  Score=241.02  Aligned_cols=316  Identities=16%  Similarity=0.188  Sum_probs=226.6

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChhHHHHHHHHHhHhhh----c------cCCCEEEEcCCCChhh
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFY----K------KRGKHIITVQTEHKSV   99 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~--~~~i~~~~g~t~a~~~~l~~l~~~~----~------~~g~~vl~~~~~~~s~   99 (397)
                      .|..++.......++.+++++++|.+  .+.+++++|||+|+..++.++....    .      .++++|+++...|+++
T Consensus       126 ~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~  205 (511)
T 3vp6_A          126 TYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI  205 (511)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred             CcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHH
Confidence            34445666677888999999999997  4579999999999999988776421    0      1467999999999999


Q ss_pred             HHHHHHHhhCCc---EEEEeccCCCCCCCHHHHHHHhcCC------ceEEEEecccCcccccccHHHHHHHHHhcCcEEE
Q psy8850         100 LDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH  170 (397)
Q Consensus       100 ~~~~~~~~~~g~---~v~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~li  170 (397)
                      ..++..+   |.   +++.+|.+.++.+|+++|+++|+++      +++|++++++|++|.+.|+++|+++|++||+++|
T Consensus       206 ~~~~~~~---g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lh  282 (511)
T 3vp6_A          206 KKAGAAL---GFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH  282 (511)
T ss_dssp             HHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHc---CCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEE
Confidence            9998887   65   8999999988999999999999765      8899999999999999999999999999999999


Q ss_pred             EecccccCcccc-----ccCc-ccccEEEecccc-ccCCCCceEEEEecCCC-Ccc----ccccccCCc---------cc
Q psy8850         171 CDAAQAVGKIDI-----NIQN-YKVDLMSFSAHK-IYGPKGIGALYIRRNPR-TRI----EAQIHGGGH---------EY  229 (397)
Q Consensus       171 vD~a~~~~~~~~-----~~~~-~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~-~~~----~~~~~~~~~---------~~  229 (397)
                      +|++|+.+....     .+.. .++|++++++|| +++|.|+|+++++++.. ...    ..++.....         ..
T Consensus       283 vD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~  362 (511)
T 3vp6_A          283 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDK  362 (511)
T ss_dssp             EEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGG
T ss_pred             EEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCC
Confidence            999999776522     1221 257999999999 66788899999986532 211    111111000         00


Q ss_pred             cccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CC----
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IE----  302 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----  302 (397)
                      .... +.. ...+++.+++..+ .++++++.++..++++++++.|++ ++++.+..+.... ..++.+.+..  .+    
T Consensus       363 ~~~~-~r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~-~pg~~l~~~~~p~-~~~v~f~~~p~~~~~~~~  438 (511)
T 3vp6_A          363 AIQC-GRH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN-REEFEMVFNGEPE-HTNVCFWYIPQSLRGVPD  438 (511)
T ss_dssp             SSCS-SCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTEEESSSSCCS-SSCEEEEECCGGGSSCCC
T ss_pred             CCCC-CCc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecCCCC-eEEEEEEEeCcccccccc
Confidence            0111 111 2345566666655 457899999999999999999998 8899988731112 3445555421  10    


Q ss_pred             -----------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHH
Q psy8850         303 -----------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       303 -----------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~  368 (397)
                                 ..++.+.|.  |+.+... ...                 ....+++|+++ ...++.+||+++++.|++
T Consensus       439 ~~~~~~~l~~~~~~l~~~L~~~G~~~~~~-~~~-----------------~~~~~~lRi~~~~~~~t~~di~~ll~~i~~  500 (511)
T 3vp6_A          439 SPQRREKLHKVAPKIKALMMESGTTMVGY-QPQ-----------------GDKANFFRMVISNPAATQSDIDFLIEEIER  500 (511)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTSCEEEE-EEE-----------------TTEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCEEEEE-EEe-----------------CCceEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence                       124555554  4332210 000                 01125799999 677899999999999987


Q ss_pred             HHHH
Q psy8850         369 KVKK  372 (397)
Q Consensus       369 ~~~~  372 (397)
                      .-+.
T Consensus       501 ~~~~  504 (511)
T 3vp6_A          501 LGQD  504 (511)
T ss_dssp             HHC-
T ss_pred             HHHh
Confidence            7543

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.97  E-value=4.3e-31  Score=251.35  Aligned_cols=295  Identities=15%  Similarity=0.095  Sum_probs=223.4

Q ss_pred             HHHHHHHHHHHHh-----CCCCCc---EEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcE
Q psy8850          42 AIEKARNEVAQLI-----YADPRE---IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFR  112 (397)
Q Consensus        42 ~~~~~~~~la~~~-----~~~~~~---i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~  112 (397)
                      ...++++.+++++     ++++++   |++|+|+++|+.+++.++.    ++||+|+++.++|+++...+.. .   |.+
T Consensus        89 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~~~---g~~  161 (430)
T 2x5f_A           89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV----NQDDTILLPEHNWGNYKLVFNTRN---GAN  161 (430)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHHTTTT---CCE
T ss_pred             CCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh----CCCCEEEEcCCcCccHHHHHHHhc---CCe
Confidence            3577888888888     888888   9999999999999999887    7899999999999998876665 4   999


Q ss_pred             EEEeccCC-CCCCCHHHHHHHhcC---CceEEEEecccCccccccc---HHHHHHHHHh-----cCcEEEEecccccCcc
Q psy8850         113 VTYLKPKN-NGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP---ILEIGELCRS-----KGVIFHCDAAQAVGKI  180 (397)
Q Consensus       113 v~~v~~~~-~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~-----~gi~livD~a~~~~~~  180 (397)
                      ++.+|.++ ++.+|++++++++++   +++++++++|+||||.++|   +++|+++|++     ||+++|+|++|+....
T Consensus       162 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~  241 (430)
T 2x5f_A          162 LQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFY  241 (430)
T ss_dssp             EEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBC
T ss_pred             EEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccC
Confidence            99999875 457899999999987   8899999999999999999   7889999999     9999999999984321


Q ss_pred             ------cc--ccCc-ccc---cEEEeccccccCCCC--ceEEEE---ecCCCCccccccccCCccccccCCCCchhHHHH
Q psy8850         181 ------DI--NIQN-YKV---DLMSFSAHKIYGPKG--IGALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVG  243 (397)
Q Consensus       181 ------~~--~~~~-~~~---d~~~~s~~K~~g~~g--~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (397)
                            ++  ++.. .+.   ++++.|+||.+|++|  +|++++   +++..+.+.......   .+....+.+.....+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~a  318 (430)
T 2x5f_A          242 EDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL---IRSNISSGPLPTQSA  318 (430)
T ss_dssp             SSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHH---HHTTTSSCCHHHHHH
T ss_pred             CcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhh---hhcccCCCChHHHHH
Confidence                  11  2222 244   688999999666445  699999   765544443322110   000123456666666


Q ss_pred             HHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHhhhc--CcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC---CcEe
Q psy8850         244 MGEAFR-L--ARIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK---DIAV  315 (397)
Q Consensus       244 l~~al~-~--~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~i~~  315 (397)
                      +.++++ .  +.+.+++..+++.++++++.+.|++.+  .++.+..+..   +.++++.+++.+..++.+.|.   ||.+
T Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~~gi~v  395 (430)
T 2x5f_A          319 VKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNS---GYFMAIKVHDVDPEALRKHLIDKYSIGV  395 (430)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCB---SSEEEEEESSSCHHHHHHHHHHHHCEEC
T ss_pred             HHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCc---eEEEEeCCCCCCHHHHHHHHHHhCCEEE
Confidence            667777 3  233456688999999999999998311  2676655432   345677776556777777663   8888


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .+|   .                    .+++||+++. .+++++++++++|+++++++
T Consensus       396 ~~g---~--------------------~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          396 IAL---N--------------------ATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             EEC---S--------------------SSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred             ecC---C--------------------CCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence            776   1                    2789999995 48999999999999998765

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.97  E-value=2.3e-29  Score=238.87  Aligned_cols=302  Identities=10%  Similarity=0.075  Sum_probs=219.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHH--HHHHHhHhhhcc--C---------CCEEEEcCCCChhhHHHHHHHh
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESNN--LAIKGAAHFYKK--R---------GKHIITVQTEHKSVLDSIRKLE  107 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~--~~l~~l~~~~~~--~---------g~~vl~~~~~~~s~~~~~~~~~  107 (397)
                      ....++++.+++++++++++|++|+|+++++.  +++.++.    .  +         |++|++..|+|+++...+... 
T Consensus        70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-  144 (423)
T 3ez1_A           70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALL----HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL-  144 (423)
T ss_dssp             TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHH----TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH-
T ss_pred             CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHh----ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc-
Confidence            35678999999999999889999999999997  8888877    4  5         599999999999999888877 


Q ss_pred             hCCcEEEEeccCCCCCCCHHHHHHHh--cCCceEEEE-ecccCcccccccHH---HHHHHH-HhcCcEEEEecccccCcc
Q psy8850         108 NDGFRVTYLKPKNNGLITLSQLEEKI--CSDTILVSV-MLVNNEIGVIQPIL---EIGELC-RSKGVIFHCDAAQAVGKI  180 (397)
Q Consensus       108 ~~g~~v~~v~~~~~~~~d~~~l~~~i--~~~~~~v~~-~~~~~~tG~~~~l~---~i~~l~-~~~gi~livD~a~~~~~~  180 (397)
                        |.+++.+|.++++ +|+++|++++  .+++++|++ ++++||||.++|.+   +|+++| ++||+++|+|++|+....
T Consensus       145 --g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~  221 (423)
T 3ez1_A          145 --GFELLTVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHL  221 (423)
T ss_dssp             --TCEEEEEEEETTE-ECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBC
T ss_pred             --CCEEEeccCCCCC-CCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhc
Confidence              9999999998766 8999999999  578898865 48999999999976   788888 999999999999983211


Q ss_pred             -------cccc-------CcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHH
Q psy8850         181 -------DINI-------QNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG  245 (397)
Q Consensus       181 -------~~~~-------~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (397)
                             ..++       ...+.++++.|+|| ++++.++|+++.+++....+......       .....+.....+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~~  294 (423)
T 3ez1_A          222 VEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGA-------QSIGPNKVEQARHV  294 (423)
T ss_dssp             CSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHH-------SCSCCCHHHHHHHH
T ss_pred             CCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhh-------hccCCCHHHHHHHH
Confidence                   1111       12356799999999 54455689999987655554433211       11233444444444


Q ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhcC----cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850         246 EAFRL----ARIEMKEELKRILFLQKRLYNGLMESIE----EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV  315 (397)
Q Consensus       246 ~al~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~  315 (397)
                      .+++.    +.+.+.+..+.+.++++.+.+.|.+.++    ++.+..+..   +.++++.++..+...+...+.  ||.+
T Consensus       295 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gv~v  371 (423)
T 3ez1_A          295 KFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKG---GYFISLDTAEPVADRVVKLAEAAGVSL  371 (423)
T ss_dssp             HHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSB---SSCEEEEESSSCHHHHHHHHHHTTEEC
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCc---cEEEEEECCCCcHHHHHHHHHHCCcEE
Confidence            55543    2334555666666666666666554333    366554433   456778887656667777665  9999


Q ss_pred             cc-cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         316 SS-GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       316 ~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      .+ |..|..+              .....++|||+++.. +++++++++++|.++++++..
T Consensus       372 ~~~g~~~~~~--------------~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~  417 (423)
T 3ez1_A          372 TPAGATYPAG--------------QDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLATE  417 (423)
T ss_dssp             CCTTTTSSTT--------------CCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCcccccCC--------------CCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            98 5555421              012348999999864 899999999999999987754

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.97  E-value=1.1e-30  Score=247.49  Aligned_cols=307  Identities=15%  Similarity=0.098  Sum_probs=210.7

Q ss_pred             HHHHHHHHHHHHHHh------CCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC-----EEEEc-CCCChhhHHHHHHHh
Q psy8850          40 EKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHFYKKRGK-----HIITV-QTEHKSVLDSIRKLE  107 (397)
Q Consensus        40 ~~~~~~~~~~la~~~------~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~-----~vl~~-~~~~~s~~~~~~~~~  107 (397)
                      .....++++.+++++      ++++++|++|+|+++|++++++++.    ++||     +|+++ .++|+.+...+....
T Consensus        74 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~----~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~  149 (417)
T 3g7q_A           74 PQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA----GRRADGSTKKVLFPLAPEYIGYADSGLEDD  149 (417)
T ss_dssp             TTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----BC----CCBEEEESSCCCHHHHHC-----C
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc----CCCccCCcceEEEeCCCccccchhhccchh
Confidence            345667788888876      5677899999999999999999987    6766     89997 999988876654331


Q ss_pred             ---hCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc
Q psy8850         108 ---NDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI  180 (397)
Q Consensus       108 ---~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~  180 (397)
                         ..+..+..++.+. ++.+|+++++  +++++++|++++++||||.++|   +++|+++|++||+++|+|++|+....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~  227 (417)
T 3g7q_A          150 LFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFP  227 (417)
T ss_dssp             CEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred             hhccccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccc
Confidence               2245566666542 3468999998  7788999999999999999999   78899999999999999999974221


Q ss_pred             cc-----ccCcccccEEEeccccccCCC--CceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH--
Q psy8850         181 DI-----NIQNYKVDLMSFSAHKIYGPK--GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--  251 (397)
Q Consensus       181 ~~-----~~~~~~~d~~~~s~~K~~g~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~--  251 (397)
                      ..     .....+.++++.|++|+ +..  ++|+++.+++....+......      +. ...+.....++.++++..  
T Consensus       228 ~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~l~~~~~  299 (417)
T 3g7q_A          228 GIIFSEARPLWNPNIILCMSLSKL-GLPGSRCGIIIANDKTITAIANMNGI------IS-LAPGGMGPAMMCEMIKRNDL  299 (417)
T ss_dssp             CCBCSCCCCCCCTTEEEEEESGGG-TCTTSCCEEEECCHHHHHHHHHHHHH------HC-CCCCSHHHHHHHHHHHTTCH
T ss_pred             cccccccccCCCCCEEEEEechhc-cCCCcceEEEEeCHHHHHHHHHhhcc------ee-eCCCcHHHHHHHHHHcCcch
Confidence            11     11123678999999994 433  478888876555544432211      11 122333344443444421  


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhhhcCc--EEEeCCCCCCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCCC
Q psy8850         252 RIEMKE-ELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTSA  324 (397)
Q Consensus       252 ~~~~~~-~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~~  324 (397)
                      .+...+ +.+++.++++.+.+.|.+.+++  +.+..+..   +.++++.++.  .+..++...|.  ||.+.+|..|.++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~  376 (417)
T 3g7q_A          300 LRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEG---AIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPG  376 (417)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCB---SSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCc---ceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCC
Confidence            122333 5677788888888888775553  56655433   4566777764  56778887776  9999999877652


Q ss_pred             CCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         325 SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ...+          .....++|||+++.  +++++++++++|.++++++.+
T Consensus       377 ~~~~----------~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~  415 (417)
T 3g7q_A          377 LDKP----------WPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWR  415 (417)
T ss_dssp             BSSC----------CGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cccc----------cccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHh
Confidence            1100          00114799999985  899999999999999988764

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.97  E-value=3.7e-29  Score=235.12  Aligned_cols=333  Identities=14%  Similarity=0.064  Sum_probs=231.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRG   86 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g   86 (397)
                      ..|+.+++++.+.+....       +..    .+...++++.++++++.+  ++++++||++|+.+++.++ .    ++|
T Consensus        17 ~~~~~~~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~----~~g   79 (393)
T 1mdo_A           17 AMGAEELAAVKTVLDSGW-------ITT----GPKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGI----GEG   79 (393)
T ss_dssp             CCCHHHHHHHHHHHHHTC-------CSS----SHHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC----CTT
T ss_pred             CCCHHHHHHHHHHHhcCC-------cCC----ChHHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCC----CCC
Confidence            356888999998886521       111    246788999999999986  7999999999999999988 5    789


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK  165 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~  165 (397)
                      ++|+++.++|+++...+...   |.+++.++.+++ +.+|++++++++++++++|++++   |+|.+.++++|.++|+++
T Consensus        80 d~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~  153 (393)
T 1mdo_A           80 DEVITPSMTWVSTLNMIVLL---GANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERY  153 (393)
T ss_dssp             CEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHH
T ss_pred             CEEEeCCCccHhHHHHHHHC---CCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHHc
Confidence            99999999999998877766   999999999864 67999999999998999988764   799999999999999999


Q ss_pred             CcEEEEecccccCccccccCccc-ccEEEeccc--cccCCCCceEEEEe-cCCCCccccccccCCc-----------ccc
Q psy8850         166 GVIFHCDAAQAVGKIDINIQNYK-VDLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGH-----------EYG  230 (397)
Q Consensus       166 gi~livD~a~~~~~~~~~~~~~~-~d~~~~s~~--K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~-----------~~~  230 (397)
                      |+++|+|++|+.|... +...++ .|++++|+|  |++++..+|+++.+ ++..+.+.+....+..           ...
T Consensus       154 ~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  232 (393)
T 1mdo_A          154 GIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQ  232 (393)
T ss_dssp             TCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------C
T ss_pred             CCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhccccccc
Confidence            9999999999976533 222234 899999999  84444346888886 4444444332221110           011


Q ss_pred             c---cCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC---CCCCCceEEEEec----
Q psy8850         231 L---RSGT-LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM---NNRIPHNLNISFN----  299 (397)
Q Consensus       231 ~---~~~~-~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~----  299 (397)
                      +   ..|+ .....+.+. .++.. .+.+++..++..++++++.+.|.+ ++ +.+...+   ......++++.++    
T Consensus       233 ~~~~~~g~~~~~~~~~~a-~~~~~-l~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~  308 (393)
T 1mdo_A          233 AEVLAPGYKYNLPDLNAA-IALAQ-LQKLDALNARRAAIAAQYHQAMAD-LP-FQPLSLPSWEHIHAWHLFIIRVDEARC  308 (393)
T ss_dssp             CEESSCCCBCCCCHHHHH-HHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-SS-CEECCCCSSCEECCCSCEEEECCHHHH
T ss_pred             ccccccCccCCCCHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CC-cccccCCCCCCCceeEEEEEEeccccc
Confidence            1   1121 011111111 11111 234566777788899999999988 65 6665322   1122456777776    


Q ss_pred             CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCC----c---cccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         300 FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCN----D---ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       300 ~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~----~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      +.+..++.+.|.  ||.+.+|..+....    ..... +..    +   ....+.||+++...++++|+++++++|++++
T Consensus       309 ~~~~~~l~~~l~~~gi~v~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~  383 (393)
T 1mdo_A          309 GITRDALMASLKTKGIGTGLHFRAAHTQ----KYYRE-RFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  383 (393)
T ss_dssp             SSCHHHHHHHHHHTTBCCBCCCCCGGGS----HHHHH-HSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHhCCCCcccccCccccC----hhhhc-cCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            457778888876  89888876552110    11111 110    0   0124689999998899999999999999887


Q ss_pred             HHH
Q psy8850         371 KKL  373 (397)
Q Consensus       371 ~~~  373 (397)
                      +.+
T Consensus       384 ~~~  386 (393)
T 1mdo_A          384 GQG  386 (393)
T ss_dssp             C--
T ss_pred             hcC
Confidence            654

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.97  E-value=1.3e-29  Score=237.70  Aligned_cols=307  Identities=15%  Similarity=0.080  Sum_probs=220.0

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g  110 (397)
                      .|.+++...+...++++.++++++.+  ++++++||++|+++++.++.    ++|++|+++.++|+++...+... ...|
T Consensus        57 ~~~y~r~~~~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~g  130 (392)
T 3qhx_A           57 GYEYARTGNPTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAML----RPGDHVVIPDDAYGGTFRLIDKVFTGWN  130 (392)
T ss_dssp             TBCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHTGGGGT
T ss_pred             CccccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHHHHhcC
Confidence            45555566678899999999999987  68999999999999999886    78999999999999988877544 3449


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      .+++.++.+     |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++|+.+... +...+++|
T Consensus       131 ~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~-~~~~~~~d  204 (392)
T 3qhx_A          131 VEYTPVALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ-QPLSLGAD  204 (392)
T ss_dssp             CEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-CGGGGTCS
T ss_pred             cEEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccC-ChHHhCCc
Confidence            999999876     899999999999999999999999999999999999999999999999999865332 23345799


Q ss_pred             EEEeccccccCCCC---ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKIYGPKG---IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K~~g~~g---~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      +++.|+||++|+.|   +|+++.++ +....+......       .....+....+.....++.    +..+.++..+++
T Consensus       205 i~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l~~----l~~~~~~~~~~~  273 (392)
T 3qhx_A          205 VVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG-------AGAVPGPFDAYLTMRGLKT----LVLRMQRHSENA  273 (392)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred             EEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhhhH----HHHHHHHHHHHH
Confidence            99999999666544   68888874 333333222111       0112233333333233332    344566777888


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCC----C
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTS----A  324 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~----~  324 (397)
                      +++.+.|++ .+.+..+..+.              ...+.++.|.+++  .....+...++  ++.+..|..++.    .
T Consensus       274 ~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~  352 (392)
T 3qhx_A          274 AAVAEFLAE-HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPS  352 (392)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGG
T ss_pred             HHHHHHHhc-CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCcc
Confidence            888889988 77765442222              1236688888876  34567777776  677777776543    1


Q ss_pred             CCChhhHHH-hhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         325 SLEPSYVLR-ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       325 ~~~~~~~~~-~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                      .+.++.... ..|+    .++.||||++...+++.++.+.++|
T Consensus       353 ~~~~~~~~~~~~g~----~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          353 AMTHASTAGSQLEV----PDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             GTSCGGGBTTBCCC----CTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             cccccccCHHHcCC----CCCeEEEEeccCCHHHHHHHHHHHh
Confidence            121111111 1222    3588999999877777777776665

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.97  E-value=1.9e-29  Score=240.05  Aligned_cols=320  Identities=14%  Similarity=0.100  Sum_probs=225.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YADPREIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      .++|+.|++++.+.+.... +... .+.  |.......++++.+++++    ++++++|++++|+++++.++ ..+.   
T Consensus        68 ~~~~~~v~~a~~~~~~~~~-~~~~-~~~--y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l-~~l~---  139 (432)
T 3ei9_A           68 EPIPEVITSAMAKKAHELS-TIEG-YSG--YGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRL-QVMF---  139 (432)
T ss_dssp             SCCCHHHHHHHHHHHHHTT-STTT-CCC--CCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHH---
T ss_pred             CCCCHHHHHHHHHHHhccc-ccCC-ccC--CCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHH-HHHc---
Confidence            3678999999999987532 2111 111  111224567788888876    77888999999999999874 5566   


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCC---------cEEEEeccCCCC--CCCHHHHHHHhcCCceEEEEecccCcccc
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDG---------FRVTYLKPKNNG--LITLSQLEEKICSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g---------~~v~~v~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~~~~tG~  151 (397)
                       ++||+|+++.++|+++...+...+..|         .+++.++.+..+  ..|++   +  .+++++|++++++||||.
T Consensus       140 -~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~--~~~~~~v~l~~p~NPtG~  213 (432)
T 3ei9_A          140 -GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLS---T--VGRTDIIFFCSPNNPTGA  213 (432)
T ss_dssp             -CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGG---G--CCCCSEEEEESSCTTTCC
T ss_pred             -CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChh---h--CCCCCEEEEeCCCCCCCC
Confidence             789999999999999999888774333         367788887432  33433   2  357899999999999999


Q ss_pred             ccc---HHHHHHHHHhcCcEEEEecccccCcc---ccccCc----ccccEEEeccccccCCCC--ceEEEEecCCC----
Q psy8850         152 IQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPR----  215 (397)
Q Consensus       152 ~~~---l~~i~~l~~~~gi~livD~a~~~~~~---~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~----  215 (397)
                      ++|   +++|+++|++||++||+|++|+....   +..+..    .+.++++.|++|.+|..|  +|+++++++..    
T Consensus       214 ~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~  293 (432)
T 3ei9_A          214 AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDG  293 (432)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTS
T ss_pred             CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcch
Confidence            988   56677779999999999999983321   112211    245799999999666445  79999887662    


Q ss_pred             ----CccccccccCCccccccCCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCC
Q psy8850         216 ----TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI  290 (397)
Q Consensus       216 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  290 (397)
                          ..+....       ....++.+.....+..+++. ...++++++.+++.++++++.+.|++ + ++.+..+..   
T Consensus       294 ~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---  361 (432)
T 3ei9_A          294 FPVAKDFNRII-------CTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS-L-GYDVYGGKN---  361 (432)
T ss_dssp             CBHHHHHHHHH-------HHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEEECSS---
T ss_pred             HHHHHHHHHHh-------ccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-C-CceecCCCc---
Confidence                2222111       11123445555555545553 33346788899999999999999998 5 666664333   


Q ss_pred             CceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         291 PHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                      +.++++.+++.+..++...+.   ||.+.+|..|.+                 .+.+++||++.  .+++++++++++|+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~-----------------~~~~~iRis~~--~~~e~l~~~l~rl~  422 (432)
T 3ei9_A          362 APYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGP-----------------GGEGFVRVSAF--GHRENILEACRRFK  422 (432)
T ss_dssp             SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHH
Confidence            456778887666777776653   899999876653                 12489999985  48999999999998


Q ss_pred             HHHH
Q psy8850         368 MKVK  371 (397)
Q Consensus       368 ~~~~  371 (397)
                      +-..
T Consensus       423 ~~~~  426 (432)
T 3ei9_A          423 QLYK  426 (432)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            7543

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.97  E-value=2.2e-30  Score=246.15  Aligned_cols=303  Identities=12%  Similarity=0.054  Sum_probs=220.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHH--HHHHHHhHhhhcc--C----------CCEEEEcCCCChhhHHHHHH
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESN--NLAIKGAAHFYKK--R----------GKHIITVQTEHKSVLDSIRK  105 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~--~~~l~~l~~~~~~--~----------g~~vl~~~~~~~s~~~~~~~  105 (397)
                      .....++++.+++++++++++|++|+|+++++  ++++.++.    +  +          ||+|++.+|+|+++...+..
T Consensus        77 ~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~  152 (427)
T 3ppl_A           77 LDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYI----FGNNDSVQPWSKEETVKWICPVPGYDRHFSITER  152 (427)
T ss_dssp             SSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHh----ccCCcccccccCCCCCEEEEcCCCcHHHHHHHHH
Confidence            34568899999999999989999999999999  58888776    4  4          89999999999999888877


Q ss_pred             HhhCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEe-cccCcccccccHH---HHHHHH-HhcCcEEEEecccccCc
Q psy8850         106 LENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVM-LVNNEIGVIQPIL---EIGELC-RSKGVIFHCDAAQAVGK  179 (397)
Q Consensus       106 ~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~-~~~~~tG~~~~l~---~i~~l~-~~~gi~livD~a~~~~~  179 (397)
                      .   |.+++.+|.+++| +|+++|+++++ +++++|++. +++||||.++|.+   +|+++| ++||++||+|++|+...
T Consensus       153 ~---g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~  228 (427)
T 3ppl_A          153 F---GFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHT  228 (427)
T ss_dssp             T---TCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred             c---CCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccc
Confidence            7   9999999998776 99999999995 678888755 8899999999976   888888 99999999999998421


Q ss_pred             c------ccccC-------cccccEEEeccccc-cCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHH
Q psy8850         180 I------DINIQ-------NYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG  245 (397)
Q Consensus       180 ~------~~~~~-------~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (397)
                      .      +.++.       ..+.++++.|+||. +.+.++|++++++++...+......       .....+.....++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~-------~~~~~~~~~q~~~~  301 (427)
T 3ppl_A          229 LTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGI-------RGIGPNKVNQLAHA  301 (427)
T ss_dssp             SSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHH-------HCSCCCHHHHHHHH
T ss_pred             cCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhc-------ccCCCCHHHHHHHH
Confidence            1      11211       23567999999994 3344589988886554444332211       11123334444444


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecc
Q psy8850         246 EAFRL---ARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSS  317 (397)
Q Consensus       246 ~al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~  317 (397)
                      .+++.   +.+.+.+..+.+.++++.+.+.|.+.++   ++.+..+..   +.++++.++..+..++...|.  ||.+.+
T Consensus       302 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gv~v~~  378 (427)
T 3ppl_A          302 RYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAG---GYFISLDVVPGTASRVAELAKEAGIALTG  378 (427)
T ss_dssp             HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSB---SSCEEEECSTTCHHHHHHHHHHTTEECCC
T ss_pred             HHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCc---cEEEEEECCcchHHHHHHHHHHCCCEEec
Confidence            44442   2345666777777777777777755333   455554433   556778887656777777775  999999


Q ss_pred             cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         318 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      |..+....             .....+++||+++.. +++++++++++|.++++++.
T Consensus       379 ~g~~~~~~-------------~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~  421 (427)
T 3ppl_A          379 AGSSYPLR-------------QDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAA  421 (427)
T ss_dssp             TTTTSGGG-------------CCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCcCCCC-------------CCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            54333200             011248999999764 89999999999999998764

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.97  E-value=2.4e-29  Score=236.24  Aligned_cols=335  Identities=13%  Similarity=0.152  Sum_probs=231.9

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh---
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF---   81 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~---   81 (397)
                      +..+.++++++++.+.+....       +..    .+...++++.++++++.+  ++++++|||+|+.+++.++...   
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~   75 (390)
T 3b8x_A            9 ASSTWDDLEYKAIQSVLDSKM-------FTM----GEYVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKP   75 (390)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTC-------CSS----CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSC
T ss_pred             CCCCCCHHHHHHHHHHHHcCC-------CCC----ChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhc
Confidence            344568999999999887521       111    346788999999999987  6888999999999999987200   


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                      ..++|++|+++.++|+++...+...   |.+++.++.+++ +.+|++++++++++++++|++++   ++|...|+++|.+
T Consensus        76 ~~~~g~~Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~  149 (390)
T 3b8x_A           76 RLKKGDEIIVPAVSWSTTYYPLQQY---GLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINK  149 (390)
T ss_dssp             SCCTTCEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHH
T ss_pred             CCCCcCEEEECCCCcHHHHHHHHHc---CCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHH
Confidence            0168899999999999999887766   999999999864 88999999999999999998874   5788899999999


Q ss_pred             HHHhcCcEEEEecccccCccccccCcccc--cEEEecc--cc-ccCCCCceEEEEec-CCCCccccccccC--Cc-----
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDINIQNYKV--DLMSFSA--HK-IYGPKGIGALYIRR-NPRTRIEAQIHGG--GH-----  227 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~~~~~~~~--d~~~~s~--~K-~~g~~g~g~~~~~~-~~~~~~~~~~~~~--~~-----  227 (397)
                      +|++||+++|+|++|+.|... +...++.  |+.++|+  +| +.++.| |+++.++ +....+.+...++  ..     
T Consensus       150 l~~~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~  227 (390)
T 3b8x_A          150 IIGGRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKN  227 (390)
T ss_dssp             HHTTSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEE
T ss_pred             HHHHcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccc
Confidence            999999999999999977654 3333343  5666553  34 555555 8888875 3333333322221  00     


Q ss_pred             ------------------cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCC
Q psy8850         228 ------------------EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR  289 (397)
Q Consensus       228 ------------------~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  289 (397)
                                        ..+++.++++....+++.. ++    .++++.++..++++++.+.|++ ++++.+..++...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l~----~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~  301 (390)
T 3b8x_A          228 KVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-LK----KLPRFISVRRKNAEYFLDKFKD-HPYLDVQQETGES  301 (390)
T ss_dssp             TTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHTT-CSSEEECCCCSBC
T ss_pred             cccccccccccccccceeccccccCcCHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHhcC-CCCcccCCCCCCc
Confidence                              0112233555555555532 43    4567888889999999999998 8888876543222


Q ss_pred             CCceEEEEec---CCChHHHHHHhC--CcEeccc---CccCC-CCCCh-hhH-HHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         290 IPHNLNISFN---FIEGESLLMAIK--DIAVSSG---SACTS-ASLEP-SYV-LRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       290 ~~~~~~~~~~---~~~~~~~~~~l~--~i~~~~g---~~~~~-~~~~~-~~~-~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      ....+.+.++   +.+..++.+.|.  ||.+...   ..|.. ..... +.. +..++.......+.|||+++..+|++|
T Consensus       302 ~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~d  381 (390)
T 3b8x_A          302 SWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDE  381 (390)
T ss_dssp             CCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHH
T ss_pred             ccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHH
Confidence            2334566666   346778888886  8887752   22211 00000 000 011111222334689999999999999


Q ss_pred             HHHHHHHH
Q psy8850         359 IDFTIKLL  366 (397)
Q Consensus       359 i~~~~~~l  366 (397)
                      |+++++.|
T Consensus       382 i~~i~~~l  389 (390)
T 3b8x_A          382 IDYLREVL  389 (390)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99999886

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.97  E-value=8.5e-30  Score=240.06  Aligned_cols=319  Identities=14%  Similarity=0.107  Sum_probs=219.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHH--hC-CCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL--IY-ADPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~-~~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++++.+++++.+.+.... ++.. .+.  |.......++++.++++  .| +++++|++++|+++++.+++. +.    +
T Consensus        46 ~~~~~v~~a~~~~~~~~~-~~~~-~~~--y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~-~~----~  116 (400)
T 3asa_A           46 PLNASVAEAFASSIARLS-SPTT-CRG--YGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLS-FF----G  116 (400)
T ss_dssp             CCCHHHHHHHHHHHHHHT-SSSC-CCC--CCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHH-HH----C
T ss_pred             CCCHHHHHHHHHHHhccc-cccc-ccC--CCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHH-Hc----C
Confidence            578899999999887532 1111 111  11123467889999999  57 677899999999999998654 44    6


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcE-EEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~-v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      +||+|++..++|+++...+...   |.+ ++.+|.++++.++.+ +++.  +++++|++++++||||.++|   +++|++
T Consensus       117 ~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~-l~~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~  190 (400)
T 3asa_A          117 PNQTVAIQDPSYPAYLDIARLT---GAKEIIALPCLQENAFFPE-FPED--THIDILCLCSPNNPTGTVLNKDQLRAIVH  190 (400)
T ss_dssp             SSCEEEEEESCCHHHHHHHHHT---TCSEEEEEECCGGGTTCCC-CCTT--CCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CCCEEEECCCCcHHHHHHHHHc---CCcceEecccchhcCcccC-hhhc--cCccEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence            8899999999999998776665   888 899988753322221 2221  57899999999999999998   567889


Q ss_pred             HHHhcCcEEEEecccc-cC---ccccccCcc----cccEEEeccccccCCCC--ceEEEEecCCC-------Cccccccc
Q psy8850         161 LCRSKGVIFHCDAAQA-VG---KIDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPR-------TRIEAQIH  223 (397)
Q Consensus       161 l~~~~gi~livD~a~~-~~---~~~~~~~~~----~~d~~~~s~~K~~g~~g--~g~~~~~~~~~-------~~~~~~~~  223 (397)
                      +|+++|+++|+|++|+ +.   ..+.++..+    +.++++.|++|.+|++|  +|+++++++..       ..+.... 
T Consensus       191 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~-  269 (400)
T 3asa_A          191 YAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERF-  269 (400)
T ss_dssp             HHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHH-
T ss_pred             HHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHH-
Confidence            9999999999999998 32   222233222    24588999999766555  79999887653       2211100 


Q ss_pred             cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEE-ec-CC
Q psy8850         224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS-FN-FI  301 (397)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~  301 (397)
                           .....++.+.....++.++++..  ++++..++++++++++.+.|++ + ++.+..+..   +.++++. ++ +.
T Consensus       270 -----~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~~  337 (400)
T 3asa_A          270 -----LSTTFNGASIPAQEAGVAGLSIL--PQLEAIHYYRENSDLLRKALLA-T-GFEVFGGEH---APYLWVKPTQANI  337 (400)
T ss_dssp             -----HHHHCCCCCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHH-T-TCEEEECSS---SSEEEEECCCTTC
T ss_pred             -----hccCccCCChHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCC---ceEEEEeccCCCC
Confidence                 01112345555555555666543  4677888999999999999998 5 777665432   4566777 65 23


Q ss_pred             ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +..++...|.   ||.+.+|..|.+                 ...+++||++  ..+++++++++++|+++++++
T Consensus       338 ~~~~~~~~l~~~~gv~v~~g~~f~~-----------------~~~~~iRis~--~~~~e~i~~~l~~l~~~~~~~  393 (400)
T 3asa_A          338 SDRDLFDFFLREYHIAITPGIGFGR-----------------SGSGFVRFSS--LGKREDILAACERLQMAPALQ  393 (400)
T ss_dssp             CTTTHHHHHHHHHSEECEEGGGGCG-----------------GGTTCEEEEC--CSCHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHhCCEEEeChhHhCC-----------------CCCCEEEEEe--eCCHHHHHHHHHHHHHHHHhh
Confidence            4556665552   899999876643                 1237899995  468999999999999887654

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.97  E-value=3.1e-30  Score=243.62  Aligned_cols=334  Identities=17%  Similarity=0.163  Sum_probs=236.7

Q ss_pred             CCCCCCCHHHHHHHHHHHhhc--cCCCCCCCcchhhhHHHHHH-HHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIE-KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++..+.|+.+++++.+.+...  .++|.. .+..+.......+ .+++.+++++|+++++++++ +|++|+.+++.++. 
T Consensus        30 ~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~-sGt~a~~~~~~~~~-  106 (407)
T 2dkj_A           30 ASENFVSKQVREAVGSVLTNKYAEGYPGA-RYYGGCEVIDRVESLAIERAKALFGAAWANVQPH-SGSQANMAVYMALM-  106 (407)
T ss_dssp             TTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCS-SHHHHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHHhhhhcCcccCCCcc-cccCCchHHHHHHHHHHHHHHHHhCCCcceEEec-chHHHHHHHHHHhc-
Confidence            444566999999999988641  223333 1211222222333 46789999999985445444 55679999999886 


Q ss_pred             hhccCCCEEEEcCCCChhhH---HHHHHHhhCCc--EEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCcccccc
Q psy8850          81 FYKKRGKHIITVQTEHKSVL---DSIRKLENDGF--RVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~---~~~~~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~  153 (397)
                         ++|++|+++.++|+++.   ..+...   |.  .++.++++ .++.+|++++++++++ ++++|++++++||  ...
T Consensus       107 ---~~gd~Vl~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~  178 (407)
T 2dkj_A          107 ---EPGDTLMGMDLAAGGHLTHGSRVNFS---GKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFW  178 (407)
T ss_dssp             ---CTTCEEEEECGGGTCCGGGTCTTSHH---HHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCC
T ss_pred             ---CCCCEEEEecccccCccchHHHHHhc---CceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCC
Confidence               78999999999998884   333333   44  45555544 3678999999999985 8999999888886  778


Q ss_pred             cHHHHHHHHHhcCcEEEEecccccCccccccCc---ccccEEEecccc-ccCCCCceEEEEe-cCCCCccccccccCCcc
Q psy8850         154 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQN---YKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHE  228 (397)
Q Consensus       154 ~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~---~~~d~~~~s~~K-~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~  228 (397)
                      |+++|.++|++||+++|+|++|+.|....+...   -..|++++|+|| +.|+.| |+++++ ++..+.+......    
T Consensus       179 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~----  253 (407)
T 2dkj_A          179 DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFP----  253 (407)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTT----
T ss_pred             CHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhcc----
Confidence            999999999999999999999986443222110   137999999999 667775 999998 4555554443221    


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGES  305 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  305 (397)
                        +..++++...+.++.++++... .+++++.+++.++++++.+.|++ + ++.+..++.  .+.++++.++.  .+..+
T Consensus       254 --~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~  327 (407)
T 2dkj_A          254 --GIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELAR-R-GYRIVTGGT--DNHLFLVDLRPKGLTGKE  327 (407)
T ss_dssp             --TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGGGTCCHHH
T ss_pred             --cccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-C-CceeecCCC--CceEEEEECcccCCCHHH
Confidence              2234566666767778888763 57889999999999999999999 5 777765322  25677787763  35677


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.+.|.  ||.+.+|..+..             ......++++|++++.+    .+++++++++++|++++++
T Consensus       328 ~~~~l~~~gi~v~~~~~~~~-------------~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          328 AEERLDAVGITVNKNAIPFD-------------PKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             HHHHHHHTTEECEECCCTTC-------------SSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCceecCCcCccc-------------cccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence            777775  899988763211             00011236899999642    6899999999999999877

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.97  E-value=1.8e-29  Score=233.50  Aligned_cols=303  Identities=15%  Similarity=0.102  Sum_probs=221.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      .++++.+++++.+.+.....++..           ...++++++++++++++++|++|+|+++|+.+++.++.      |
T Consensus        27 ~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~------g   89 (350)
T 3fkd_A           27 DGDKDHLEKHLVENLNCIRHYPEP-----------DAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR------G   89 (350)
T ss_dssp             CSCCHHHHHHHHHTGGGGGSCCCT-----------TCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT------T
T ss_pred             CCCCHHHHHHHHHhHhHHhcCCCC-----------cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC------C
Confidence            356899999999888554433322           12578999999999988899999999999999999764      7


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK  165 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~  165 (397)
                      |+|+++.++|+++...+...   |.+++.+|. ++.+.+++        +++++|++++++||||.++|.+++.++++.+
T Consensus        90 d~Vi~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~  158 (350)
T 3fkd_A           90 SRSLIAIPSFAEYEDACRMY---EHEVCFYPSNEDIGEADF--------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDH  158 (350)
T ss_dssp             CEEEEEESCCHHHHHHHHHT---TCEEEEEETTSCGGGSCC--------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHC
T ss_pred             CEEEEeCCCcHHHHHHHHHc---CCeEEEEecCCccccCcc--------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhC
Confidence            99999999999998777776   999999998 65444544        6789999999999999999999999998887


Q ss_pred             C-cEEEEecccccCccc-----cccCcccccEEEeccccccCCC--CceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850         166 G-VIFHCDAAQAVGKID-----INIQNYKVDLMSFSAHKIYGPK--GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       166 g-i~livD~a~~~~~~~-----~~~~~~~~d~~~~s~~K~~g~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
                      + .+||+|++|+.....     ..+...+.++++.|++|.+|+.  ++|+++++++..+.+.....         ..+.+
T Consensus       159 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~---------~~~~~  229 (350)
T 3fkd_A          159 PDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST---------PWAVN  229 (350)
T ss_dssp             TTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC---------TTCSC
T ss_pred             CCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC---------CCCCC
Confidence            5 799999999733221     1222335678999999965533  47998887655544443321         22455


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC---CcE
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK---DIA  314 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~i~  314 (397)
                      .....++.++++......+.+.+ ..++++++.+.|++ ++++.+..+.    +.++++.++..+..++.+.|.   ||.
T Consensus       230 ~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~L~~-~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~gi~  303 (350)
T 3fkd_A          230 ALAIEAAKFILIHPAQFTLPIRK-WQRNTVDFITALNR-LDGVEVHPSG----TTFFLLRLKKGTAAELKKYMLEEYNML  303 (350)
T ss_dssp             HHHHHHHHHHHHCTTTTCCCHHH-HHHHHHHHHHHHHH-STTEEECCCS----SSEEEEEESSSCHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhc-CCCcEECCCC----CcEEEEECCCCCHHHHHHHHHHHCCEE
Confidence            55555555566532212223333 33888999999988 7888875432    445567777556777877764   899


Q ss_pred             ecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       315 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.+|..|..                 ...+++||+++   +.+++++++++|+++.++
T Consensus       304 v~~g~~f~~-----------------~~~~~iRis~~---~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          304 IRDASNFRG-----------------LDESYVRITTQ---RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             CEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred             EEeCccCCC-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence            999876643                 12489999987   689999999998877643

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.97  E-value=9.7e-30  Score=238.57  Aligned_cols=308  Identities=14%  Similarity=0.126  Sum_probs=219.4

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g  110 (397)
                      .|.+++...+...++++.++++++.+  +.++++||++|+++++. +.    ++||+|+++.+.|++....+.. +...|
T Consensus        46 ~~~~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~G  118 (393)
T 1n8p_A           46 TYEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SL----PQGSHAVSIGDVYGGTHRYFTKVANAHG  118 (393)
T ss_dssp             SCCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TS----CSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred             CcceecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-Hc----CCCCEEEEeCCCchHHHHHHHHHHHHcC
Confidence            34455555567899999999999987  56666777999999999 76    7899999999999987766543 34459


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc----CcEEEEecccccCccccccCc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK----GVIFHCDAAQAVGKIDINIQN  186 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~----gi~livD~a~~~~~~~~~~~~  186 (397)
                      .+++.+|.+     | +++++++++++++|++++++||+|.+.|+++|.++|+++    |+++|+|++|+.+... +...
T Consensus       119 ~~v~~v~~~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~  191 (393)
T 1n8p_A          119 VETSFTNDL-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLN  191 (393)
T ss_dssp             SCCEEESSH-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGG
T ss_pred             cEEEEeCCC-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHH
Confidence            999999876     7 899999999999999999999999999999999999999    9999999999866542 3444


Q ss_pred             ccccEEEeccccccCCCC--c-eEEEEe-cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         187 YKVDLMSFSAHKIYGPKG--I-GALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI  262 (397)
Q Consensus       187 ~~~d~~~~s~~K~~g~~g--~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~  262 (397)
                      +++|++++|+||++|+.|  + |+++++ ++..+.+......       ..++.+....+.+..+++.    +....++.
T Consensus       192 ~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l~~----~~~~~~~~  260 (393)
T 1n8p_A          192 FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA-------IGAIPSPFDAWLTHRGLKT----LHLRVRQA  260 (393)
T ss_dssp             GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHTT----HHHHHHHH
T ss_pred             cCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhccch----HHHHHHHH
Confidence            579999999999777766  5 888885 4444444322110       0112233333333334443    34455666


Q ss_pred             HHHHHHHHHHHhhhcCc-EEEe-CCCC-------------CC-C-CceEEEEecCC--ChHHHHHHhC--CcEecccCcc
Q psy8850         263 LFLQKRLYNGLMESIEE-IYIN-GDMN-------------NR-I-PHNLNISFNFI--EGESLLMAIK--DIAVSSGSAC  321 (397)
Q Consensus       263 ~~~~~~l~~~l~~~~~~-~~~~-~~~~-------------~~-~-~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~  321 (397)
                      .++++.+.+.|.+ .+. +..+ .+.-             .. . +.++.|.+++.  +...+...+.  ++.++.|+.|
T Consensus       261 ~~~~~~l~~~L~~-~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~  339 (393)
T 1n8p_A          261 ALSANKIAEFLAA-DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIE  339 (393)
T ss_dssp             HHHHHHHHHHHTS-CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSS
T ss_pred             HHHHHHHHHHHHh-CCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCc
Confidence            6777788888877 554 4322 1100             01 3 67888888753  3455666665  5677777766


Q ss_pred             CCCCC--Ch------hhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         322 TSASL--EP------SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       322 ~~~~~--~~------~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      +.+..  .+      ...+..+|+.    .+.||+|++.++++++++.+.++|+++
T Consensus       340 s~~~~p~~~~h~~~~~~~~~~~g~~----~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          340 SLLEVPAVMTHGGIPKEAREASGVF----DDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             CEEECTTTTTSCSSCTTTTTTTSCC----TTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ceeeccccccccccCHHHHHhcCCC----CCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            53211  11      1234566655    389999999999999999999998764

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.97  E-value=8e-30  Score=241.69  Aligned_cols=322  Identities=12%  Similarity=0.029  Sum_probs=221.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC-CCC---cEEEeCChhHHHHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA-DPR---EIIWTSGATESNNLAI   75 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~-~~~---~i~~~~g~t~a~~~~l   75 (397)
                      |.....++++.+.+++.+.... ...      |.    ......++++.+++++ +. .++   +|++|+|+++|+.+++
T Consensus        50 ~~~~~~~~~~~v~~a~~~~~~~~~~~------y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~  119 (418)
T 3rq1_A           50 DEEGNLVFLKTVKEEYLSLSDSEHVG------YA----PIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLI  119 (418)
T ss_dssp             CTTSCBCCCHHHHHHHHTCCHHHHHS------CC----CTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHH
T ss_pred             CCCCCccccHHHHHHHHHhcccccCC------CC----CCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHH
Confidence            3345667788888888764432 111      11    1113456677777755 21 245   8999999999999999


Q ss_pred             HHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcC----Cce-EEEEecc-cCc
Q psy8850          76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICS----DTI-LVSVMLV-NNE  148 (397)
Q Consensus        76 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~----~~~-~v~~~~~-~~~  148 (397)
                      .++.    ++||+|+++.|+|+++...+...   |.+++.+|.+ +++.+|++++++++++    +++ ++++++| +||
T Consensus       120 ~~l~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NP  192 (418)
T 3rq1_A          120 HNYT----EPGDEVLTADWYWGAYRVICSDT---GRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNP  192 (418)
T ss_dssp             HHHS----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTT
T ss_pred             HHhc----CCCCEEEECCCCchhHHHHHHHc---CCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCC
Confidence            9887    79999999999999998887776   9999999985 5568999999999975    666 8889889 999


Q ss_pred             ccccccHH---HHHHHHH------hcCcEEEEecccccCcc------cc--ccCccccc---EEEeccccccCCCC--ce
Q psy8850         149 IGVIQPIL---EIGELCR------SKGVIFHCDAAQAVGKI------DI--NIQNYKVD---LMSFSAHKIYGPKG--IG  206 (397)
Q Consensus       149 tG~~~~l~---~i~~l~~------~~gi~livD~a~~~~~~------~~--~~~~~~~d---~~~~s~~K~~g~~g--~g  206 (397)
                      ||.++|.+   +|+++|+      +||+++|+|++|.....      ++  .......+   +++.|++|.+|..|  +|
T Consensus       193 tG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G  272 (418)
T 3rq1_A          193 TGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVG  272 (418)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCE
T ss_pred             CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcce
Confidence            99999965   4556666      89999999999862221      10  11111223   77889999655444  79


Q ss_pred             EEEE---ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8850         207 ALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESI  277 (397)
Q Consensus       207 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~  277 (397)
                      ++++   +++..+.+.......   .....+..+.....++.++++.      +.+...++.+++.++++++.+.|++ +
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~  348 (418)
T 3rq1_A          273 AMIGISDDEEIADEFFEVNKST---SRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQ-V  348 (418)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHH---HHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             EEEEEeCCHHHHHHHHHHHHHH---HhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            9888   555544443321100   0001123455555555555532      2334556778899999999999998 5


Q ss_pred             CcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850         278 EEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT  355 (397)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  355 (397)
                       ++.+..+..   +.++++.+  .+..++.+.|.  ||.+.+|                        .+++||+++ .++
T Consensus       349 -g~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~~gi~v~~g------------------------~~~iRis~~-~~~  397 (418)
T 3rq1_A          349 -GLPMLPYRG---GFFITIPT--DSANAICEELKKEHIYVIAL------------------------ANGIRIAAC-GIP  397 (418)
T ss_dssp             -TCCCCCCCS---SSEEEEEC--TTHHHHHHHHHHTTEECEEC------------------------SSEEEEEGG-GSC
T ss_pred             -CCCCCCCCc---eEEEEcCC--CCHHHHHHHHHhCCEEEecC------------------------CCCeEEEEe-cCC
Confidence             665554332   23334443  35667777665  8888876                        277999987 368


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy8850         356 EKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ++++++++++|+++++++.+
T Consensus       398 ~~~i~~~~~~l~~~l~~~~~  417 (418)
T 3rq1_A          398 KCQMTGLAEKIYNAMKSLGK  417 (418)
T ss_dssp             HHHHTTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999987653

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.97  E-value=4.5e-29  Score=236.72  Aligned_cols=302  Identities=12%  Similarity=0.056  Sum_probs=218.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHH--HHHHHHhHhhhccC------------CCEEEEcCCCChhhHHHHHHH
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESN--NLAIKGAAHFYKKR------------GKHIITVQTEHKSVLDSIRKL  106 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~--~~~l~~l~~~~~~~------------g~~vl~~~~~~~s~~~~~~~~  106 (397)
                      ....++++.+++++++++++|++|+|+++++  .+++.++.    ++            +++|++..|+|+++...+...
T Consensus        76 ~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~----~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~  151 (422)
T 3d6k_A           76 LGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYT----WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF  151 (422)
T ss_dssp             SCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhc----CcccccccccccCCCCEEEEeCCccHHHHHHHHHc
Confidence            3468899999999999989999999999997  67777776    33            347999999999999888877


Q ss_pred             hhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEE-EecccCcccccccHH---HHHHHHH-hcCcEEEEeccccc---
Q psy8850         107 ENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVS-VMLVNNEIGVIQPIL---EIGELCR-SKGVIFHCDAAQAV---  177 (397)
Q Consensus       107 ~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~-~~~~~~~tG~~~~l~---~i~~l~~-~~gi~livD~a~~~---  177 (397)
                         |.+++.+|.++++ +|++++++++++ ++++|+ +++++||||.++|.+   +|+++|+ +||++||+|++|+.   
T Consensus       152 ---g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~  227 (422)
T 3d6k_A          152 ---GFEMINVPMTDEG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTL  227 (422)
T ss_dssp             ---TCEEEEEEEETTE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBS
T ss_pred             ---CCEEEecCCCCCC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCcccccc
Confidence               9999999998766 899999999986 788887 789999999999965   7888888 99999999999973   


Q ss_pred             Ccc---cccc-------CcccccEEEeccccccCC-CCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHH
Q psy8850         178 GKI---DINI-------QNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGE  246 (397)
Q Consensus       178 ~~~---~~~~-------~~~~~d~~~~s~~K~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  246 (397)
                      ...   ...+       ...+.++++.|++|..++ ..+|+++++++....+......      + ..+.+.....+..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~------~-~~~~~~~~q~a~~~  300 (422)
T 3d6k_A          228 SDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEWYASHANV------R-GIGPNKLNQLAHAQ  300 (422)
T ss_dssp             SSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHH------H-CSCCCHHHHHHHHH
T ss_pred             CCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHh------h-cCCCCHHHHHHHHH
Confidence            110   1111       123568999999995332 2489999886655544432211      1 12344455555556


Q ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecc-
Q psy8850         247 AFRL---ARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSS-  317 (397)
Q Consensus       247 al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~-  317 (397)
                      +++.   +.+++++..+.++++++++.+.|.+.++   ++.+..+..   +.++++.++..+...+...+.  ||.+.+ 
T Consensus       301 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~  377 (422)
T 3d6k_A          301 FFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTG---GYFISVDVVPGTASRVVELAKEAGIALTGA  377 (422)
T ss_dssp             HHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSB---SSCEEEEESTTCHHHHHHHHHHTTEECCCT
T ss_pred             HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCc---ceEEEEECCCCCHHHHHHHHHHCCeEEEcC
Confidence            6643   2345667777778888888777765333   355554433   456777877545566666665  999998 


Q ss_pred             cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         318 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      |..|..+.              ....+++||+++. ++++++++++++|+++++++.+
T Consensus       378 g~~f~~~~--------------~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~  420 (422)
T 3d6k_A          378 GSSFPLHN--------------DPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL  420 (422)
T ss_dssp             TTTSGGGC--------------CTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCC--------------CCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence            44443100              0123789999997 7999999999999999877643

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.97  E-value=1e-28  Score=232.61  Aligned_cols=307  Identities=14%  Similarity=0.117  Sum_probs=220.2

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g  110 (397)
                      .|.+++...+...++++.+++++|.+  ++++++||++|+.+++.++.    ++||+|+++.+.|+++...+.. +...|
T Consensus        72 ~~~y~r~~~p~~~~l~~~la~~~g~~--~~~~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g  145 (414)
T 3ndn_A           72 HYVYSRYGNPTVSVFEERLRLIEGAP--AAFATASGMAAVFTSLGALL----GAGDRLVAARSLFGSCFVVCSEILPRWG  145 (414)
T ss_dssp             CCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred             CcCcCCCCChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCccchHHHHHHHHHHHcC
Confidence            34444555668899999999999975  78999999999999999887    7999999999999998877754 23459


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      .+++.+|.+     |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+.... ....++|
T Consensus       146 ~~~~~v~~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-~~~~g~d  219 (414)
T 3ndn_A          146 VQTVFVDGD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ-GFPLGVD  219 (414)
T ss_dssp             CEEEEECTT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-CGGGTCS
T ss_pred             cEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC-chhcCCC
Confidence            999999886     8999999999999999999999999999999999999999999999999998654322 2245789


Q ss_pred             EEEeccccccCCCC---ceEEEEecCCCC-ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKIYGPKG---IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K~~g~~g---~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      +++.|++|.+|+.|   +|+++++++... .+......       ..++.+....+.....++    .+..+.++..+++
T Consensus       220 iv~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~-------~g~~~~~~~a~~~~~~l~----~l~~r~~~~~~~a  288 (414)
T 3ndn_A          220 VVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH-------TGPAMSAFNAWVLLKGLE----TLAIRVQHSNASA  288 (414)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHH-------HCCCCCHHHHHHHHHHGG----GHHHHHHHHHHHH
T ss_pred             eEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            99999999666545   699988865443 33221111       011222222222222222    3455667778888


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC------ChHHHHHHhC--CcEecccCccCCC
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI------EGESLLMAIK--DIAVSSGSACTSA  324 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~------~~~~~~~~l~--~i~~~~g~~~~~~  324 (397)
                      +++.+.|++ .+.+..+..+.              ...+.++.|.+++.      ....+.+.++  ++.+..|..++..
T Consensus       289 ~~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~  367 (414)
T 3ndn_A          289 QRIAEFLNG-HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLV  367 (414)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEE
T ss_pred             HHHHHHHhc-CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCcee
Confidence            999999988 77765443222              12356888888753      2456777777  6677777655431


Q ss_pred             ----C----CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         325 ----S----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       325 ----~----~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                          .    ..+.......|+.+    +.||||++.    |+++.+++.|++++
T Consensus       368 ~~p~~~~~~~~~~~~~~~~g~~~----~~iRlsvG~----e~~~dli~dl~~al  413 (414)
T 3ndn_A          368 THPATTTHRAMGPEGRAAIGLGD----GVVRISVGL----EDTDDLIADIDRAL  413 (414)
T ss_dssp             ECGGGTTTCTTHHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             eCccccccccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHhh
Confidence                1    11223345566665    899999996    55666666666554

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.97  E-value=9.7e-30  Score=233.52  Aligned_cols=297  Identities=16%  Similarity=0.118  Sum_probs=203.0

Q ss_pred             HHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEEEEeccCCCCC
Q psy8850          45 KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGL  123 (397)
Q Consensus        45 ~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v~~v~~~~~~~  123 (397)
                      ++++.+++++|.+  +.++++||++|+.+++.++.    ++|++|+++.++|+++...+.. +...|.+++.++.     
T Consensus         2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~----~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----   70 (331)
T 1pff_A            2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-----   70 (331)
T ss_dssp             HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----
T ss_pred             hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----
Confidence            5789999999987  44555666999999999876    7899999999999999877654 3345999999986     


Q ss_pred             CCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh-cCcEEEEecccccCccccccCcccccEEEecccc-ccC
Q psy8850         124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYG  201 (397)
Q Consensus       124 ~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~-~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g  201 (397)
                      .|++++++++++++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+....+. ..+.|++++|+|| +.+
T Consensus        71 ~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~~  149 (331)
T 1pff_A           71 AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYING  149 (331)
T ss_dssp             TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTSS
T ss_pred             CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hcCCcEEEEECccccCC
Confidence            38899999999999999999999999999999999999999 99999999999876543333 3579999999999 555


Q ss_pred             CCC--ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Q psy8850         202 PKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--  276 (397)
Q Consensus       202 ~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~--  276 (397)
                      +.+  +|++++++ +..+.+.+...++      ..++.+....+++..+++....    +.++..++.+.+.+.+++.  
T Consensus       150 ~~~r~~G~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~l~~~~~  219 (331)
T 1pff_A          150 HTDVVAGLVCSRADIIAKVKSQGIKDI------TGAIISPHDAWLITRGTLTLDM----RVKRAAENAQKVAEFLHEHKA  219 (331)
T ss_dssp             SSSCCCEEEEECHHHHHHHHHTCCCCC------CCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCceEEEEEeCcHHHHHHHHHHHHhh------cCCCCCHHHHHHHHcCcchHHH----HHHHHHHHHHHHHHHHHcCCC
Confidence            544  68999987 5555554443220      1123444444444345554332    2333444444444444430  


Q ss_pred             -----------cCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccC---------ccCCC--CCChhhHH
Q psy8850         277 -----------IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGS---------ACTSA--SLEPSYVL  332 (397)
Q Consensus       277 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~---------~~~~~--~~~~~~~~  332 (397)
                                 ++++.+..++....++++.+.++  +..++...+.  +|.+...+         +|...  ...++..+
T Consensus       220 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~  297 (331)
T 1pff_A          220 VKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEER  297 (331)
T ss_dssp             CCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHH
T ss_pred             eeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHH
Confidence                       11221111111123567777765  4556666665  77654432         22110  01122334


Q ss_pred             HhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         333 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       333 ~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ...|+..    +.+|++++.+++++++++++++|+++
T Consensus       298 ~~~g~~~----~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          298 EAAGLTD----NLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             HHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             HhcCCCC----CeEEEEEecCCHHHHHHHHHHHHHHh
Confidence            4555543    89999999999999999999998754

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.97  E-value=8.6e-29  Score=238.94  Aligned_cols=329  Identities=13%  Similarity=0.054  Sum_probs=223.1

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC--CCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA--DPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      |..+.+++.+.+....+.... .|.......+..+.+.+.+.+.. |.  ++++|++|+|+++|+.+++.++.    ++|
T Consensus       103 P~~~~~~~~~~l~~~~~~~~~-~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~----~~g  177 (498)
T 3ihj_A          103 PEDAKKRARRILQACGGNSLG-SYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV----SGG  177 (498)
T ss_dssp             CHHHHHHHHHHHHHC-----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC----CCC
T ss_pred             CHHHHHHHHHHHHhccCCCCC-CCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc----CCC
Confidence            566667777777653211111 22222222334444444444444 34  57789999999999999999887    565


Q ss_pred             ----CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcC-----CceEEEEecccCccccccc-
Q psy8850          87 ----KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQP-  154 (397)
Q Consensus        87 ----~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~-----~~~~v~~~~~~~~tG~~~~-  154 (397)
                          ++|+++.|.|+++...+...   |.+++.+++++  ++.+|+++|++++++     ++++|++++++||||.+++ 
T Consensus       178 d~~~d~Vlv~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~  254 (498)
T 3ihj_A          178 GKSRTGVMIPIPQYPLYSAVISEL---DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSR  254 (498)
T ss_dssp             GGGSEEEEEEESCCTHHHHHHHHT---TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCH
T ss_pred             CCCCCEEEEeCCCchhHHHHHHHc---CCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCH
Confidence                49999999999999888877   99999999875  357899999999987     6899999999999999988 


Q ss_pred             --HHHHHHHHHhcCcEEEEecccccCcc-----ccccCcc----------c-ccEEEecccccc-CCCC--ceEEEE---
Q psy8850         155 --ILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNY----------K-VDLMSFSAHKIY-GPKG--IGALYI---  210 (397)
Q Consensus       155 --l~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~----------~-~d~~~~s~~K~~-g~~g--~g~~~~---  210 (397)
                        +++|+++|++||++||+|++|+....     ..++..+          . ..+++.|+||.+ |..|  +|++++   
T Consensus       255 ~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~  334 (498)
T 3ihj_A          255 KCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINL  334 (498)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESC
T ss_pred             HHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecC
Confidence              56799999999999999999984322     1111111          1 136788999944 5334  688875   


Q ss_pred             ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcE
Q psy8850         211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR----------LARIEMKEELKRILFLQKRLYNGLMESIEEI  280 (397)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  280 (397)
                      +++....+.....        ...+++.....++.++++          .+.....++.+++.++++++.+.|++ ++++
T Consensus       335 ~~~l~~~l~~~~~--------~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g~  405 (498)
T 3ihj_A          335 HPEIKGQLVKLLS--------VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ-VPGI  405 (498)
T ss_dssp             CHHHHHHHHHHHH--------HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTE
T ss_pred             CHHHHHHHHHHHh--------ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence            3333333322211        112445555566655553          23334567788999999999999999 8898


Q ss_pred             EEeCCCCCCCCceEEEEec------------CCChHHH--HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCc
Q psy8850         281 YINGDMNNRIPHNLNISFN------------FIEGESL--LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHS  344 (397)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (397)
                      .+..+.+   +..+++.+.            +.+..++  ...|.  ||.+.+|..|...                .+..
T Consensus       406 ~~~~p~g---g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~----------------~~~~  466 (498)
T 3ihj_A          406 HCNPLQG---AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR----------------EGTY  466 (498)
T ss_dssp             ECCCCCB---SSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC----------------TTCC
T ss_pred             EecCCCe---EEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCCC
Confidence            8765543   223333332            2333443  33343  9999999877630                1236


Q ss_pred             eEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         345 SIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       345 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ++|+++.  .+++++++++++|.++++++++.
T Consensus       467 ~~Ris~~--~~~e~l~~~i~~L~~~~~~~~~~  496 (498)
T 3ihj_A          467 HFRMTIL--PPVEKLKTVLQKVKDFHINFLEK  496 (498)
T ss_dssp             BEEEECC--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            8999996  68999999999999999888763

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.97  E-value=5.7e-29  Score=232.36  Aligned_cols=304  Identities=16%  Similarity=0.227  Sum_probs=216.6

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---cC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---KR   85 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---~~   85 (397)
                      +++.+.+++.+.+... .++.. .|.     .....++++.+++++|++ +++++++|+++|+.+++.++ +.+.   ++
T Consensus        45 ~~~~v~~a~~~~~~~~-~~~~~-~y~-----~~~~~~l~~~la~~~g~~-~~v~~~~g~t~a~~~~~~~~-~~~~~~~~~  115 (375)
T 2eh6_A           45 AYPKLTEALKEQVEKL-LHVSN-LYE-----NPWQEELAHKLVKHFWTE-GKVFFANSGTESVEAAIKLA-RKYWRDKGK  115 (375)
T ss_dssp             SCHHHHHHHHHHHHHC-SCCCT-TBC-----CHHHHHHHHHHHHTSSSC-EEEEEESSHHHHHHHHHHHH-HHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhc-cccCc-ccC-----CHHHHHHHHHHHhhcCCC-CeEEEeCchHHHHHHHHHHH-HHHhccCCC
Confidence            7899999999998763 23322 221     235678999999999984 78999999999999998853 2222   45


Q ss_pred             C-CEEEEcCCCChhhHHHHHHHhhC-----CcE-----EEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850          86 G-KHIITVQTEHKSVLDSIRKLEND-----GFR-----VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        86 g-~~vl~~~~~~~s~~~~~~~~~~~-----g~~-----v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                      | ++|++.+++|+++...+..+...     |..     +..++.     +|+++|++++++++++|++++++||||.+.|
T Consensus       116 g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~  190 (375)
T 2eh6_A          116 NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEETAGIIIEVIQGEGGVNEA  190 (375)
T ss_dssp             CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCTTEEEEEECSEETTTTSEEC
T ss_pred             CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcCCeEEEEEeCccCCCCCcCC
Confidence            6 99999999988877665544211     111     444443     4899999999999999999999999999988


Q ss_pred             ----HHHHHHHHHhcCcEEEEecccc-cCccc--cccCccc--ccEEEecccc-ccCCCCceEEEEecCCCCcccccccc
Q psy8850         155 ----ILEIGELCRSKGVIFHCDAAQA-VGKID--INIQNYK--VDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHG  224 (397)
Q Consensus       155 ----l~~i~~l~~~~gi~livD~a~~-~~~~~--~~~~~~~--~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~  224 (397)
                          +++|.++|++||+++|+|++|+ ++...  .++..++  +|++++|  | +.++.++|+++++++..+.+.....+
T Consensus       191 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~~~~~~~~~~~~  268 (375)
T 2eh6_A          191 SEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREEVAQSFTPGSHG  268 (375)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHHHHTTCCTTSCC
T ss_pred             CHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHHHHhhhcCCCCC
Confidence                9999999999999999999998 54322  2233334  7888655  9 55556789999987655555442111


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChH
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE  304 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (397)
                            ...+++ .....+..++++...    ++.++++++++++.+.|++ ++...+.+.     +.++++.++. +..
T Consensus       269 ------~~~~~~-~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-----g~~~~~~~~~-~~~  330 (375)
T 2eh6_A          269 ------STFGGN-PLACRAGTVVVDEVE----KLLPHVREVGNYFKEKLKE-LGKGKVKGR-----GLMLGLELER-ECK  330 (375)
T ss_dssp             ------CSSTTC-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-TTSSEEEEE-----TTEEEEECSS-CCH
T ss_pred             ------CCCCCC-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HhcCCceEE-----EEEEEEEEcC-cHH
Confidence                  112333 333333345666543    6778888999999999988 654222221     4566777764 456


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ++.+.|.  ||.+.++.                       .+++||+++..++++++++++++|+++
T Consensus       331 ~~~~~l~~~gi~~~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          331 DYVLKALEKGLLINCTA-----------------------GKVLRFLPPLIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             HHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6776665  77776541                       278999999888999999999999875

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.97  E-value=5.5e-29  Score=234.41  Aligned_cols=331  Identities=15%  Similarity=0.090  Sum_probs=229.1

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCCE
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGKH   88 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~~   88 (397)
                      ++.+++++.+.+...       .+..    .+...++++.++++++.+  ++++++||++|+..++.++ .    ++|++
T Consensus        43 ~~~v~~a~~~~~~~~-------~y~~----~~~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~----~~gd~  105 (399)
T 2oga_A           43 RAETDAAIARVLDSG-------RYLL----GPELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLGI----GPGDE  105 (399)
T ss_dssp             HHHHHHHHHHHHHHT-------CCSS----SHHHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTC----CTTCE
T ss_pred             CHHHHHHHHHHHhcC-------CCCC----chhHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCC----CCcCE
Confidence            478889988887641       1211    246788999999999987  6888899999999999988 5    78999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCc
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV  167 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi  167 (397)
                      |+++.++|+++...+...   |.+++.+|.++ ++.+|++++++++++++++|+   ++||||.+.|+++|.++|+++|+
T Consensus       106 vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~  179 (399)
T 2oga_A          106 VIVPSHTYIASWLAVSAT---GATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGL  179 (399)
T ss_dssp             EEEESSSCTHHHHHHHHT---TCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTC
T ss_pred             EEECCCccHHHHHHHHHC---CCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCC
Confidence            999999999988877665   99999999986 578999999999998888887   45789999999999999999999


Q ss_pred             EEEEecccccCccccccCccc--ccEEEecc--ccccCCC-CceEEEEe-cCCCCccccccccCCcccccc------CCC
Q psy8850         168 IFHCDAAQAVGKIDINIQNYK--VDLMSFSA--HKIYGPK-GIGALYIR-RNPRTRIEAQIHGGGHEYGLR------SGT  235 (397)
Q Consensus       168 ~livD~a~~~~~~~~~~~~~~--~d~~~~s~--~K~~g~~-g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~  235 (397)
                      ++|+|++|+.+... +...++  .|++++|+  +|++|+. .+|+++.+ ++..+.+......+.. ..+.      ...
T Consensus       180 ~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~g~~~~  257 (399)
T 2oga_A          180 HIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSR-QKYSHETKGTNSR  257 (399)
T ss_dssp             EECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCS-STTCCCSCCCBCC
T ss_pred             EEEEECcccccCcc-CCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcc-ccccccccccCCC
Confidence            99999999977532 222223  69999999  5966653 35777775 4444444333222110 0010      012


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--Cc
Q psy8850         236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DI  313 (397)
Q Consensus       236 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i  313 (397)
                      .+....++..++++.+    +.+.++..++++++.+.|++ ++++.+...+......++.+.+...+..++.+.|.  ||
T Consensus       258 ~~~~~~a~~~~~l~~~----~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI  332 (399)
T 2oga_A          258 LDEMQAAVLRIRLAHL----DSWNGRRSALAAEYLSGLAG-LPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGI  332 (399)
T ss_dssp             CCHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHTTT-CTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTB
T ss_pred             cCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCC
Confidence            3444444444555443    44566777888899999988 77766543332222222234443345677877776  88


Q ss_pred             EecccCccCCCCCChhhHHHhhCCCcc-------ccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         314 AVSSGSACTSASLEPSYVLRALGCNDE-------LAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~g~~~~-------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .+.++.. .+  ......++.+|....       ...+.|||+++..++++|+++++++|+++++++
T Consensus       333 ~v~~~~~-~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l  396 (399)
T 2oga_A          333 DTLTHYP-VP--VHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV  396 (399)
T ss_dssp             CCBCSCS-SC--GGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             ceecCCC-Cc--cccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            8876421 11  001123333333211       013789999999999999999999999988654

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.97  E-value=4.6e-29  Score=234.92  Aligned_cols=309  Identities=15%  Similarity=0.126  Sum_probs=210.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~  111 (397)
                      +.++....+...++++.+++++|.+  ++++++||++|+.+++.++.    ++||+|+++.+.|+++...+.. +...|.
T Consensus        54 ~~Y~~~~~~~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~  127 (404)
T 1e5e_A           54 YIYTRLGNPTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL----KAGDHLISDECLYGCTHALFEHALTKFGI  127 (404)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred             ccccCCcChHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCC
Confidence            3333334466789999999999986  67888888999999999887    7899999999999999885442 334499


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh-cCcEEEEecccccCccccccCccccc
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-KGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~-~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      +++.+|.+     |++++++++++++++|++++++||||.+.|+++|+++|++ +|+++|+|++|+.+.....+ .++.|
T Consensus       128 ~~~~v~~~-----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~-~~~~d  201 (404)
T 1e5e_A          128 QVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV-DFGVD  201 (404)
T ss_dssp             EEEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG-GGTCS
T ss_pred             EEEEECCC-----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc-ccCCE
Confidence            99999876     7899999999999999999999999999999999999999 99999999999976532112 34799


Q ss_pred             EEEeccccc-cCCCC--ceEEEEecCCCC-ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKI-YGPKG--IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K~-~g~~g--~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      +++.|+||. .++.+  +|+++++++... .+.....++      ..+..+....++...+++.    ++.+.++..++.
T Consensus       202 i~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~------~g~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~  271 (404)
T 1e5e_A          202 VVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI------TGSVISPHDAWLITRGLST----LNIRMKAESENA  271 (404)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC------CCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred             EEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHhHhH----HHHHHHHHHHHH
Confidence            999999994 44544  499999876555 444332211      0122343444444455543    234455666777


Q ss_pred             HHHHHHHhhhcCcEE-EeCCC-------------CCCCCceEEEEecCCChHHHHHHhC--CcEecccCc----------
Q psy8850         267 KRLYNGLMESIEEIY-INGDM-------------NNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSA----------  320 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~----------  320 (397)
                      +.+.+.+++ .+.+. +..+.             ....++++.+.+++. .......+.  ++ +.+|..          
T Consensus       272 ~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~  348 (404)
T 1e5e_A          272 MKVAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG-FEGAKKLLDNLKL-ITLAVSLGGCESLIQH  348 (404)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHHTCSS-SEESSCCCSSSCEEEC
T ss_pred             HHHHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC-HHHHHHHHHhCCC-ceeccCCCCcceeeec
Confidence            777777777 44432 11111             011256666676542 223333343  66 333321          


Q ss_pred             cCCC--CCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         321 CTSA--SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       321 ~~~~--~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      |...  ...++......|+.    .++|||+++.    ++++++++.|+++++.+-
T Consensus       349 ~~~~~~~~~~~~~~~~~g~~----~~~iRis~g~----e~~~~li~~l~~al~~~~  396 (404)
T 1e5e_A          349 PASMTHAVVPKEEREAAGIT----DGMIRLSVGI----EDADELIADFKQGLDALL  396 (404)
T ss_dssp             GGGTTTTTSCHHHHHHTTCC----TTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHhcCCC----CCeEEEEeCC----CCHHHHHHHHHHHHHHHH
Confidence            1110  00112233344443    3899999996    889999999999887553

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.97  E-value=3.3e-29  Score=230.37  Aligned_cols=299  Identities=15%  Similarity=0.099  Sum_probs=221.3

Q ss_pred             CCCCC-CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCChhHHHHHHHHH
Q psy8850           2 DYSAT-TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLAIKG   77 (397)
Q Consensus         2 ~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~i~~~~g~t~a~~~~l~~   77 (397)
                      +++.. .++|+.+++++.+.+....   .. .|..     ....++++.++++++   +++++|++++|+++|+.+++.+
T Consensus        25 ~~~~~~~~~~~~v~~a~~~~~~~~~---~~-~y~~-----~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~   95 (335)
T 1uu1_A           25 ALNENPFPFPEDLVDEVFRRLNSDA---LR-IYYD-----SPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM   95 (335)
T ss_dssp             SSCCCSSCCCHHHHHHHHHTCCGGG---GG-SCCC-----SSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHhhhhh---hh-cCCC-----CchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHH
Confidence            44444 3578999999998773211   00 1111     136789999999999   8888999999999999999987


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                      +       ||+|++. ++|+++...+...   |.+++.+|.++++.+|++++     +++++|++++|+||||.++|.++
T Consensus        96 ~-------gd~Vl~~-p~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~  159 (335)
T 1uu1_A           96 F-------DRSVFFP-PTYSCYRIFAKAV---GAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREE  159 (335)
T ss_dssp             S-------SEEEECS-SSCHHHHHHHHHH---TCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHH
T ss_pred             h-------CCcEEEC-CCcHHHHHHHHHc---CCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHH
Confidence            6       6899999 9999998877766   99999999887767888877     57899999999999999999999


Q ss_pred             HHHHHHhcCcEEEEecccccCcc--ccc-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccccc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKI--DIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLR  232 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~--~~~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (397)
                      +.++++..| ++|+|++|+....  ..+ +...+.++++.|++|.+|+.|  +|+++++++..+.+.....         
T Consensus       160 l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~---------  229 (335)
T 1uu1_A          160 IERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL---------  229 (335)
T ss_dssp             HHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSC---------
T ss_pred             HHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcC---------
Confidence            999999889 9999999983211  122 223356899999999777555  7999998665444433221         


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC-
Q psy8850         233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK-  311 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  311 (397)
                      ..+.+.....++.++++. .+++++..+++.++++++.+.|++ + ++.+. +..   +.++++.++..+..++.+.|. 
T Consensus       230 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~  302 (335)
T 1uu1_A          230 PFNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE-M-GYRIT-DSR---GNFVFVFMEKEEKERLLEHLRT  302 (335)
T ss_dssp             TTCSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBC-CCC---SSEEEEECCTHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CcEEc-CCC---CeEEEEECCCCCHHHHHHHHHH
Confidence            124566666666677765 345778889999999999999998 5 55443 222   345667766434556766665 


Q ss_pred             -CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                       ||.+.++                        .+++||+++   +.+++++++++|+++
T Consensus       303 ~gi~v~~~------------------------~~~iRis~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          303 KNVAVRSF------------------------REGVRITIG---KREENDMILRELEVF  334 (335)
T ss_dssp             HTEEEEEE------------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred             CCEEEEEC------------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence             8888752                        278999996   468899999998754

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.97  E-value=5.9e-29  Score=233.77  Aligned_cols=329  Identities=14%  Similarity=0.155  Sum_probs=231.6

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGK   87 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~   87 (397)
                      .++++++++.+.+...+..      ..+    +...++++.++++++.  +++++++|+++|+.+++.++ .    ++|+
T Consensus        10 ~~~~v~~a~~~~~~~~~~~------~~g----~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~~----~~gd   73 (394)
T 1o69_A           10 MGGNELKYIEEVFKSNYIA------PLG----EFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAGV----KQDD   73 (394)
T ss_dssp             --CCHHHHHHHHHHHTTTS------CTT----HHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTC----CTTC
T ss_pred             CCHHHHHHHHHHHHcCCcc------CCC----hHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCC----CCCC
Confidence            4678899998888652211      111    3578899999999997  48999999999999999998 5    7899


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      +|+++.++|+++...+...   |.+++.++.++++.+|++++++++++   ++++|++++   |+|...++++|.++|++
T Consensus        74 ~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~  147 (394)
T 1o69_A           74 IVLASSFTFIASVAPICYL---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKE  147 (394)
T ss_dssp             EEEEESSSCGGGTHHHHHT---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHH
T ss_pred             EEEECCCccHHHHHHHHHc---CCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHH
Confidence            9999999999999888776   99999999988888999999999987   789999886   79999999999999999


Q ss_pred             cCcEEEEecccccCccccccC--c-ccccEEEeccccccCCCCceEEEEe-cCCCCccccccccCC--------cccccc
Q psy8850         165 KGVIFHCDAAQAVGKIDINIQ--N-YKVDLMSFSAHKIYGPKGIGALYIR-RNPRTRIEAQIHGGG--------HEYGLR  232 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~~~~~--~-~~~d~~~~s~~K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~--------~~~~~~  232 (397)
                      +|+++|+|++|+.|....+..  . .++|+.++|.+|.+++.++|+++++ ++..+.+......+.        ...+++
T Consensus       148 ~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~  227 (394)
T 1o69_A          148 NDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYN  227 (394)
T ss_dssp             TTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCB
T ss_pred             cCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcc
Confidence            999999999999665432211  1 2578888888996666678999996 454444433211110        112233


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEecC----------
Q psy8850         233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNF----------  300 (397)
Q Consensus       233 ~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------  300 (397)
                      .++++....+++.. ++    .+++..++.+++++++.+.|.+ +  +.+..+...  ...+++.+.++.          
T Consensus       228 ~~~~~~~aa~~l~~-l~----~l~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  299 (394)
T 1o69_A          228 YRLSNVLGAIGVAQ-ME----VLEQRVLKKREIYEWYKEFLGE-Y--FSFLDELENSRSNRWLSTALINFDKNELNACQK  299 (394)
T ss_dssp             CBCCHHHHHHHHHH-HT----THHHHHHHHHHHHHHHHHHHTT-T--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCE
T ss_pred             cCcCHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHhcc-c--ccccCCCCCCcceeEEEEEEecchhhccccccc
Confidence            44555555555432 33    3455778889999999999988 4  555543221  112345677652          


Q ss_pred             ------------CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhh---C--CCccccCceEEEeeCCCCCHHHHHH
Q psy8850         301 ------------IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRAL---G--CNDELAHSSIRFTIGRFTTEKEIDF  361 (397)
Q Consensus       301 ------------~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~---g--~~~~~~~~~iRi~~~~~~~~~~i~~  361 (397)
                                  .+..++.+.|.  ||.++++..+..  ..  ..++..   +  .........+|+.+..++|++|+++
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~--~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~  375 (394)
T 1o69_A          300 DINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMH--TQ--EVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYE  375 (394)
T ss_dssp             EEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGG--GC--GGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHH
T ss_pred             cccccccccccccCHHHHHHHHHHcCCcccccCCccc--cc--hhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHH
Confidence                        24567777776  899988854321  00  011111   0  0111122567777788899999999


Q ss_pred             HHHHHHHHHH
Q psy8850         362 TIKLLKMKVK  371 (397)
Q Consensus       362 ~~~~l~~~~~  371 (397)
                      ++++|+++++
T Consensus       376 ~~~~l~~~~~  385 (394)
T 1o69_A          376 ISKLILKSIK  385 (394)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999987753

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.97  E-value=2.3e-28  Score=229.72  Aligned_cols=308  Identities=17%  Similarity=0.188  Sum_probs=223.8

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh------
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY------   82 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~------   82 (397)
                      .+|.+.+++.+.+..... ... .     ...+...++++++++++|  .+++++++||++|+++++..+....      
T Consensus        53 ~~p~v~~a~~~~~~~~~~-~~~-~-----~~~~~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~  123 (392)
T 3ruy_A           53 RHPKIINALIDQANRVTL-TSR-A-----FHSDQLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKV  123 (392)
T ss_dssp             TCHHHHHHHHHHHTTCSC-CCT-T-----SEETTHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHhccc-ccc-c-----cCCHHHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCC
Confidence            589999999998876321 111 1     123457889999999998  4589999999999999999765320      


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhC-C---------cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLEND-G---------FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~-g---------~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~  152 (397)
                      ..++++|++..++|++.......+... +         ..+..++.+     |+++|++++++++++|++++++||||.+
T Consensus       124 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~nptG~~  198 (392)
T 3ruy_A          124 EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAITPNTAAFILEPIQGEAGIN  198 (392)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCCTTEEEEEECSSBSTTTSB
T ss_pred             CCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhccCeEEEEEeCccCCCCCc
Confidence            013679999999998776665544211 1         124445543     8999999999999999999999999999


Q ss_pred             cc----HHHHHHHHHhcCcEEEEecccc-cCc----cccccCcccccEEEecccc-ccCC-CCceEEEEecCCCCccccc
Q psy8850         153 QP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRIEAQ  221 (397)
Q Consensus       153 ~~----l~~i~~l~~~~gi~livD~a~~-~~~----~~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~~  221 (397)
                      .|    +++|.++|++||+++|+|++|+ ++.    ...+.....+|++++|  | +.|+ ..+|+++++++..+.+...
T Consensus       199 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~~~~~~~~~~  276 (392)
T 3ruy_A          199 IPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAANRDILGVFEPG  276 (392)
T ss_dssp             CCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECHHHHTTCCTT
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEECHHHHhhhccC
Confidence            98    9999999999999999999996 322    1222223356887665  9 5552 3479999987665555443


Q ss_pred             cccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcEEEeCCCCCCCCceEEEEec
Q psy8850         222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISFN  299 (397)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~  299 (397)
                      ..+.       ..+.+...+.+..++++....  +++.+++.++++++.+.|++ +  +.+......    +.++.+.++
T Consensus       277 ~~~~-------~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~----g~~~~~~~~  342 (392)
T 3ruy_A          277 SHGS-------TFGGNPLACAVSIAALEVLEE--EKLTERSLQLGEKLVGQLKE-IDNPMITEVRGK----GLFIGIELN  342 (392)
T ss_dssp             SSCC-------SSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTT-CCCTTEEEEEEE----TTEEEEEES
T ss_pred             CcCC-------CCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH-hcCCCceEEEee----eeEEEEEEc
Confidence            2221       124566667777778876654  67888999999999999988 5  334433221    456666676


Q ss_pred             CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         300 FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       300 ~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      . +..++.+.|.  ||.+.++.                       .+++|++++..++++++++++++|++++
T Consensus       343 ~-~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          343 E-PARPYCEQLKAAGLLCKETH-----------------------ENVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             S-CSHHHHHHHHTTTEECCCBT-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             c-hHHHHHHHHHHCCcEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            5 6677877775  88887652                       2889999998899999999999999875

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.97  E-value=2.1e-29  Score=238.70  Aligned_cols=336  Identities=17%  Similarity=0.200  Sum_probs=230.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++..++++.+++++.+.+...+  +++.+..+.......+....+++.+++++++++++|++++| ++|+.+++.++.  
T Consensus        32 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sG-t~a~~~~~~~~~--  108 (417)
T 3n0l_A           32 ASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSG-SQANQGVYAALI--  108 (417)
T ss_dssp             TTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHHHHHHS--
T ss_pred             cccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccH-HHHHHHHHHHhc--
Confidence            4556779999999998885433  33433122222233345556888999999998766777655 899999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHh--hCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLE--NDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~--~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                        ++||+|+++.++|+++........  ..+..++.++.+.++.+|+++|+++++ +++++|++++++|  |.+.|+++|
T Consensus       109 --~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i  184 (417)
T 3n0l_A          109 --NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVIDFAKF  184 (417)
T ss_dssp             --CTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHH
T ss_pred             --CCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccCCHHHH
Confidence              899999999999988765322221  125667777787778899999999998 6899998877664  899999999


Q ss_pred             HHHHHhcCcEEEEecccccCcc-----ccccCcccccEEEecccc-ccCCCCceEEEEe-cCCCCccccccccCCccccc
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEYGL  231 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~  231 (397)
                      .++|++||+++|+|++|+.+..     +..+.  ..|++++|+|| +.|+.| |+++++ ++....+......      .
T Consensus       185 ~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~------~  255 (417)
T 3n0l_A          185 REIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFP------G  255 (417)
T ss_dssp             HHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTT------T
T ss_pred             HHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCC------c
Confidence            9999999999999999865443     22222  47999999999 666664 999888 3444444333221      1


Q ss_pred             cCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHHHHH
Q psy8850         232 RSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLM  308 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  308 (397)
                      ..++++...++++.+++... .+++.++.+++.++++++.+.|.+  .++.+....  ...+++++.+..  .+...+..
T Consensus       256 ~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  331 (417)
T 3n0l_A          256 IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD--RKFKLVSDG--TDNHLVLMSFLDREFSGKDADL  331 (417)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS--CSSSEEEEECTTSSSCHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--CCceeccCC--CCceEEEEEcccCCCCHHHHHH
Confidence            13456667777777777764 356788899999999999999998  577766521  124466666642  35667776


Q ss_pred             HhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHHH
Q psy8850         309 AIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       309 ~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~~  372 (397)
                      .|.  ||.+.++.....             .......+.+|+++...    .++++|++++++|.+++++
T Consensus       332 ~l~~~gi~v~~~~~~~~-------------~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~  388 (417)
T 3n0l_A          332 ALGNAGITANKNTVPGE-------------IRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD  388 (417)
T ss_dssp             HHHHTTEECEECCCTTC-------------CSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCeEEeccccCCC-------------CcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            665  888876532211             01122346799987532    5689999999999988754

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.97  E-value=6.8e-29  Score=236.71  Aligned_cols=337  Identities=13%  Similarity=0.165  Sum_probs=223.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHH-HHHHHHHHHHHHHhCCCCCc---EEEeCChhHHHHHHHHH
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAE-KAIEKARNEVAQLIYADPRE---IIWTSGATESNNLAIKG   77 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~---i~~~~g~t~a~~~~l~~   77 (397)
                      +|..+++++|++++...+...+  ++|.+ .+..+.... .....+++.+++++|++.+.   .++++|||+|+..++.+
T Consensus        61 as~n~~~~~V~eA~~~~l~~~y~~G~~g~-r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a  139 (490)
T 2a7v_A           61 ASENFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA  139 (490)
T ss_dssp             TTCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHcCCCccCCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence            5677889999999999887655  67766 444433322 34446779999999998653   45667999999999999


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHH-----HHhhCCc--EEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCc
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIR-----KLENDGF--RVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNE  148 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~-----~~~~~g~--~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~  148 (397)
                      ++    ++||+|+++++.|.++.....     .....|.  +++.++++ +++.+|++++++++.+ ++++|++..++||
T Consensus       140 l~----~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~  215 (490)
T 2a7v_A          140 LL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA  215 (490)
T ss_dssp             HC----CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC
T ss_pred             Hc----CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC
Confidence            88    899999999998876542111     1111143  44455555 5789999999999864 7899988777765


Q ss_pred             ccccccHHHHHHHHHhcCcEEEEecccccCcc-----ccccCcccccEEEecccc-ccCCCCceEEEEecCCC-------
Q psy8850         149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPR-------  215 (397)
Q Consensus       149 tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~-------  215 (397)
                        ...|+++|.++|++||+++++|++|+.|..     +..+.  ++|++++|+|| +.||.| |+++++++..       
T Consensus       216 --~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~  290 (490)
T 2a7v_A          216 --RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTG  290 (490)
T ss_dssp             --SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTE
T ss_pred             --CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hheeeccchhccccccc
Confidence              567999999999999999999999875432     22222  68999999999 778876 9999987521       


Q ss_pred             --------CccccccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC
Q psy8850         216 --------TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDM  286 (397)
Q Consensus       216 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  286 (397)
                              ..+....+.      ...++++...++++.++++... .+++++.+++.+++++|.+.|.+  .|+.+....
T Consensus       291 ~~~~~~l~~~i~~~~~~------g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~--~G~~v~~~~  362 (490)
T 2a7v_A          291 REIPYTFEDRINFAVFP------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSGG  362 (490)
T ss_dssp             EEEECCCHHHHHHHHTT------TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS
T ss_pred             chhhHHHHHHHHHHhcc------cCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--cCcEEecCC
Confidence                    111111111      1235677888888888887765 35688899999999999999999  588876531


Q ss_pred             CCCCCceEEEEec--CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC----CCCHHH
Q psy8850         287 NNRIPHNLNISFN--FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKE  358 (397)
Q Consensus       287 ~~~~~~~~~~~~~--~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~----~~~~~~  358 (397)
                        ...+++++.+.  +.+..++.+.|.  ||.+..+..+..              ..+...+.|||+...    ..+++|
T Consensus       363 --t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d--------------~~p~~~~~iRig~~a~t~~g~~~~d  426 (490)
T 2a7v_A          363 --TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD--------------RSAITPGGLRLGAPALTSRQFREDD  426 (490)
T ss_dssp             --CSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTC--------------CCSSSCSEEEEESHHHHHTTCCHHH
T ss_pred             --CCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCC--------------CCCCCCCceEecccccccCCCCHHH
Confidence              12466677765  346677777776  888876532211              011224779997643    368999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKVKKLR  374 (397)
Q Consensus       359 i~~~~~~l~~~~~~~~  374 (397)
                      ++++++.|.+++....
T Consensus       427 ~~~~~~~i~~~l~~~~  442 (490)
T 2a7v_A          427 FRRVVDFIDEGVNIGL  442 (490)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999987543

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.97  E-value=1.2e-29  Score=240.51  Aligned_cols=316  Identities=13%  Similarity=0.081  Sum_probs=215.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCC--cEEEeCChhHHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPR--EIIWTSGATESNNL   73 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~--~i~~~~g~t~a~~~   73 (397)
                      |..+.+++++.|++++.+.+....   .. .|..    .....++++.+++++..      +++  +|++|+|+++|+.+
T Consensus        61 d~~~~~~~~~~v~~a~~~~~~~~~---~~-~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~  132 (420)
T 4f4e_A           61 NEDGKIPLLRAVRDAEKARVEAGL---PR-GYLP----IDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKI  132 (420)
T ss_dssp             CTTSCCCCCHHHHHHHHHHHHTCC---CC-CCCC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHH
T ss_pred             CCCCCccCcHHHHHHHHHHhccCC---CC-CCCC----CCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHH
Confidence            455666777999999999887511   00 1211    22356677777777643      456  89999999999999


Q ss_pred             HHH--HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc--CCCCCCCHHHHHHHhc---CCceEEEEeccc
Q psy8850          74 AIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKIC---SDTILVSVMLVN  146 (397)
Q Consensus        74 ~l~--~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~~  146 (397)
                      +++  ++.    ++||+|++++|+|+++...+...   |.+++.+|.  ++++.+|+++++++++   ++++++++++++
T Consensus       133 ~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~  205 (420)
T 4f4e_A          133 GADFLRTL----NPKAKVAISDPSWENHRALFDMA---GFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCH  205 (420)
T ss_dssp             HHHHHHHH----CTTCCEEEEESCCHHHHHHHHHT---TCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSC
T ss_pred             HHHHHHHh----CCCCEEEEeCCCcHhHHHHHHHc---CCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCC
Confidence            954  445    78999999999999998887777   999999998  3567899999999998   678999999999


Q ss_pred             Cccccccc---HHHHHHHHHhcCcEEEEecccccCccc-----cc---c-CcccccEEEeccccccCCCC--ceEEEEec
Q psy8850         147 NEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-----IN---I-QNYKVDLMSFSAHKIYGPKG--IGALYIRR  212 (397)
Q Consensus       147 ~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~-----~~---~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~~  212 (397)
                      ||||.+++   +++|+++|++||+++|+|++|+.....     ..   + ...+.++++.|++|.+|+.|  +|++++..
T Consensus       206 NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~  285 (420)
T 4f4e_A          206 NPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIIT  285 (420)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEc
Confidence            99999987   568889999999999999998733221     11   1 12256788999999777656  78877532


Q ss_pred             C---CCCccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhc---CcE
Q psy8850         213 N---PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESI---EEI  280 (397)
Q Consensus       213 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~  280 (397)
                      .   ....+......   ..+.....++.....+...+++.      +.++++++.++++++++++.+.|++ +   +++
T Consensus       286 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~  361 (420)
T 4f4e_A          286 DSKDEAARVLSQLKR---VIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKA-AGIERDF  361 (420)
T ss_dssp             SSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCC
T ss_pred             CCHHHHHHHHHHHHH---HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc
Confidence            1   11111111100   00011123333444444344432      2345788899999999999999998 4   244


Q ss_pred             EEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         281 YINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      .+..+..   +.+++   .+.+...+...+.  ||.+.++                           .|++++. .++++
T Consensus       362 ~~~~~~~---g~~~~---~~~~~~~~~~~l~~~gI~v~~~---------------------------~Ris~~~-~~~~~  407 (420)
T 4f4e_A          362 SFINAQR---GMFSY---SGLTSAQVDRLREEFGIYAVST---------------------------GRICVAA-LNTRN  407 (420)
T ss_dssp             THHHHSC---SSEEE---CCCCHHHHHHHHHHHCEECCTT---------------------------SEEEGGG-CCTTT
T ss_pred             eeECCCc---cEEEE---eCCCHHHHHHHHHhCCEEecCC---------------------------CeEEEec-CCHHH
Confidence            4443322   22222   2344555555554  7877653                           2999975 46778


Q ss_pred             HHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKV  370 (397)
Q Consensus       359 i~~~~~~l~~~~  370 (397)
                      +++++++|++++
T Consensus       408 i~~~~~~l~~~l  419 (420)
T 4f4e_A          408 LDVVANAIAAVL  419 (420)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.97  E-value=6.2e-30  Score=240.77  Aligned_cols=318  Identities=12%  Similarity=0.045  Sum_probs=216.2

Q ss_pred             CCCCCCCCCHHHHHHHHH-HHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCC--cEEEeCChhHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIP-YLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPR--EIIWTSGATESNN   72 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~--~i~~~~g~t~a~~   72 (397)
                      |..+.+++++.+++++.+ .+.... .  . .|.    ......++++.++++++.      +++  +|++|+|+++|+.
T Consensus        38 d~~~~~~~~~~v~~a~~~~~~~~~~-~--~-~y~----~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~  109 (397)
T 3fsl_A           38 NEDGIIPQLQAVAEAEARLNAQPHG-A--S-LYL----PMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALK  109 (397)
T ss_dssp             CTTSCCCCCHHHHHHHHHHHHSCCC-C--C-CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHH
T ss_pred             CCCCCccCcHHHHHHHHhhccCccc-c--c-cCC----CCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHH
Confidence            556667777999999999 776411 0  0 111    112356778888888753      567  8999999999999


Q ss_pred             HHHH--HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc--CCCCCCCHHHHHHHhc---CCceEEEEecc
Q psy8850          73 LAIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKIC---SDTILVSVMLV  145 (397)
Q Consensus        73 ~~l~--~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~  145 (397)
                      ++++  ++.    ++||+|+++.++|+++...+...   |.+++.+|.  ++++.+|+++++++++   +++++++++++
T Consensus       110 ~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p  182 (397)
T 3fsl_A          110 VGADFLKRY----FPESGVWVSDPTWENHVAIFAGA---GFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCC  182 (397)
T ss_dssp             HHHHHHHHH----CTTCCEEEESSCCHHHHHHHHHT---TCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSS
T ss_pred             HHHHHHHhc----CCCCeEEEeCCCchhHHHHHHHc---CCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCC
Confidence            9954  344    78999999999999998887776   999999998  4567899999999998   57889999999


Q ss_pred             cCcccccccH---HHHHHHHHhcCcEEEEecccccCccc-----cc---c-CcccccEEEeccccccCCCC--ceEEEEe
Q psy8850         146 NNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKID-----IN---I-QNYKVDLMSFSAHKIYGPKG--IGALYIR  211 (397)
Q Consensus       146 ~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~~-----~~---~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~  211 (397)
                      +||||.+++.   ++|+++|++||+++|+|++|+.....     ..   + ...+.++++.|++|.+|+.|  +|++++.
T Consensus       183 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~  262 (397)
T 3fsl_A          183 HNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVM  262 (397)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred             CCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEe
Confidence            9999999874   58899999999999999998743321     11   1 12256688999999777556  6888764


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEE
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESIE---EIYI  282 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~  282 (397)
                      ......+...........+...+.++.....++.++++.      +.++++++.+++.++++++.+.|++ ++   ++.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~  341 (397)
T 3fsl_A          263 CEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLST-EMPERNFDY  341 (397)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSCCTH
T ss_pred             cCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcee
Confidence            222111111100000000011223343444444344432      2446788899999999999999998 43   4444


Q ss_pred             eCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHH
Q psy8850         283 NGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID  360 (397)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~  360 (397)
                      ..+..   +.++++   +.+...+...+.  ||.+.+|                         +  ||+++. .++++|+
T Consensus       342 ~~~~~---~~~~~~---~~~~~~~~~~l~~~gi~v~~g-------------------------~--Ris~~~-~~~~~i~  387 (397)
T 3fsl_A          342 LLNQR---GMFSYT---GLSAAQVDRLREEFGVYLIAS-------------------------G--RMCVAG-LNTANVQ  387 (397)
T ss_dssp             HHHCC---SSEEEC---CCCHHHHHHHHHTTCEECCTT-------------------------C--EEEGGG-CCTTTHH
T ss_pred             ecCCc---eEEEec---CCCHHHHHHHHHhCCEEECCC-------------------------C--eEEEEe-cCHhhHH
Confidence            33322   223232   234555555554  8888765                         2  999975 3567899


Q ss_pred             HHHHHHHHH
Q psy8850         361 FTIKLLKMK  369 (397)
Q Consensus       361 ~~~~~l~~~  369 (397)
                      +++++|+++
T Consensus       388 ~~~~~l~~~  396 (397)
T 3fsl_A          388 RVAKAFAAV  396 (397)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999875

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.97  E-value=1.6e-28  Score=232.64  Aligned_cols=344  Identities=12%  Similarity=0.082  Sum_probs=231.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRG   86 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g   86 (397)
                      ++++++++++.+.+...  +..+  +.......+...++++.+++++|.+  ++++++|||+|+.+++.++ .    ++|
T Consensus        13 ~~~~~~~~a~~~~~~~~--~~~~--~~~~~g~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~----~~g   82 (418)
T 2c81_A           13 QHSDRTRRKIEEVFQSN--RWAI--SGYWTGEESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGI----GEG   82 (418)
T ss_dssp             CCCHHHHHHHHHHHHHT--CCST--TSBCCSSCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC----CTT
T ss_pred             CCCHHHHHHHHHHHhcC--Cccc--cCcccCCHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC----CCc
Confidence            45799999999998762  1111  1111112345788999999999987  5778888999999999988 5    789


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK  165 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~  165 (397)
                      |+|+++.++|+++...+...   |.+++.++.++ ++.+|++++++++++++++|+++   ||+|...++++|.++|++|
T Consensus        83 d~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~~~  156 (418)
T 2c81_A           83 DEVIVPSLTWIATATAVLNV---NALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQEH  156 (418)
T ss_dssp             CEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHHHT
T ss_pred             CEEEECCCccHhHHHHHHHc---CCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHHHC
Confidence            99999999999999887766   99999999985 77899999999999999988865   4799999999999999999


Q ss_pred             CcEEEEecccccCcc-cc-ccCcccccEEEecc--ccccCCCCceEEEEe-cCCCCccccccccCCccc--------ccc
Q psy8850         166 GVIFHCDAAQAVGKI-DI-NIQNYKVDLMSFSA--HKIYGPKGIGALYIR-RNPRTRIEAQIHGGGHEY--------GLR  232 (397)
Q Consensus       166 gi~livD~a~~~~~~-~~-~~~~~~~d~~~~s~--~K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~--------~~~  232 (397)
                      |++||+|++|+.+.. .. ....+ .|++++|+  ||.+|+..+|+++.+ ++..+.+......+....        .+.
T Consensus       157 ~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (418)
T 2c81_A          157 NLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDM  235 (418)
T ss_dssp             TCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCB
T ss_pred             CCEEEEECcccccCccCCEecccc-cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccccccccchh
Confidence            999999999997753 11 11111 24566655  996565346888875 344444433222211100        011


Q ss_pred             --CCCCchhH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC---CCCceEEEEec---
Q psy8850         233 --SGTLATHQ----IVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN---RIPHNLNISFN---  299 (397)
Q Consensus       233 --~~~~~~~~----~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~---  299 (397)
                        .++....+    +-.+.+++.. ..++++++.++..++++++.+.|.+ ++++.+..++..   ...+++.+.++   
T Consensus       236 ~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (418)
T 2c81_A          236 QLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSK-IDGIKVMKRPPQVSRQTYYGYVFRFDPVK  314 (418)
T ss_dssp             SEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCTTEEECCCSEEEEEECGGG
T ss_pred             hccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCCCCCcccccEEEEEEEcccc
Confidence              10011100    0111122221 1234677788888889999999988 888888744332   22345557776   


Q ss_pred             --CCChHHHHHHhC---CcE---ecccCccCCCCCChhhHHHhhCC---------------------CccccCceEEEee
Q psy8850         300 --FIEGESLLMAIK---DIA---VSSGSACTSASLEPSYVLRALGC---------------------NDELAHSSIRFTI  350 (397)
Q Consensus       300 --~~~~~~~~~~l~---~i~---~~~g~~~~~~~~~~~~~~~~~g~---------------------~~~~~~~~iRi~~  350 (397)
                        +.+..++.+.|.   ||.   +.++..+..  ..+.  +...+.                     ......+.|||++
T Consensus       315 ~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~  390 (418)
T 2c81_A          315 FGGLNADQFCEILREKLNMGTFYLHPPYLPVH--KNPL--FCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHH  390 (418)
T ss_dssp             TTTCCHHHHHHHHHHHHTCCTTTEECCCCCGG--GCTT--CCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEG
T ss_pred             ccccCHHHHHHHHHHcCCCCcccccccccccc--cCch--hcccccccccccccccccccccCCChHHHHHHhCEEEecC
Confidence              456778888775   788   777652210  0000  000000                     0011236899999


Q ss_pred             CCCC-CHHHHHHHHHHHHHHHHHH
Q psy8850         351 GRFT-TEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       351 ~~~~-~~~~i~~~~~~l~~~~~~~  373 (397)
                      +..+ |++||++++++|+++++++
T Consensus       391 ~~~~gt~edi~~~~~~l~~~~~~~  414 (418)
T 2c81_A          391 AILLAEPSHLSLLVDAVAELARKF  414 (418)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhh
Confidence            9999 9999999999999987654

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.97  E-value=7.3e-29  Score=232.98  Aligned_cols=329  Identities=15%  Similarity=0.103  Sum_probs=227.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRG   86 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g   86 (397)
                      ..++++++++.+.+....       +.   ...+...++++.++++++.+  ++++++|||+|+.+++.++ .    ++|
T Consensus        33 ~~~~~~~~a~~~~~~~~~-------~~---~~~~~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~~----~~g   96 (391)
T 3dr4_A           33 RLDGNERDYVLECMDTTW-------IS---SVGRFIVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMGI----GPG   96 (391)
T ss_dssp             CCCSSHHHHHHHHHHHTC-------CS---SCSHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHTC----CTT
T ss_pred             CCCHHHHHHHHHHHHcCC-------cc---CCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC----CCc
Confidence            456889999988886521       11   01246789999999999987  7899999999999999988 5    789


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK  165 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~  165 (397)
                      ++|+++.++|+++...+...   |.+++.++.+ +++.+|++++++++++++++|++   +||||.+.|+++|.++|++|
T Consensus        97 d~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~---~n~tG~~~~~~~i~~l~~~~  170 (391)
T 3dr4_A           97 DEVIVPSLTYIASANSVTYC---GATPVLVDNDPRTFNLDAAKLEALITPRTKAIMP---VHLYGQICDMDPILEVARRH  170 (391)
T ss_dssp             CEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGSGGGCCTTEEEECC---BCGGGCCCCHHHHHHHHHHT
T ss_pred             CEEEECCCchHHHHHHHHHC---CCEEEEEecCccccCcCHHHHHHhcCCCceEEEE---ECCCCChhhHHHHHHHHHHc
Confidence            99999999999998887766   9999999998 56789999999999999998874   56899999999999999999


Q ss_pred             CcEEEEecccccCcccccc--CcccccEEEec--cccccCCCCceEEEEecC-CCCccccccccCCcc-ccc---cCCCC
Q psy8850         166 GVIFHCDAAQAVGKIDINI--QNYKVDLMSFS--AHKIYGPKGIGALYIRRN-PRTRIEAQIHGGGHE-YGL---RSGTL  236 (397)
Q Consensus       166 gi~livD~a~~~~~~~~~~--~~~~~d~~~~s--~~K~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~-~~~---~~~~~  236 (397)
                      |+++|+|++|+.|....+.  ..+ .|+.++|  .+|.+++...|+++.+++ ..+.+......+... ..+   ..+ .
T Consensus       171 ~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g-~  248 (391)
T 3dr4_A          171 NLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVG-F  248 (391)
T ss_dssp             TCEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCC-C
T ss_pred             CCEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccc-c
Confidence            9999999999977653322  111 3566666  559444333577777643 323333222221110 000   001 0


Q ss_pred             chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC--CC--CCCCceEEEEecC---CChHHHHH
Q psy8850         237 ATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGD--MN--NRIPHNLNISFNF---IEGESLLM  308 (397)
Q Consensus       237 ~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~--~~~~~~~~~~~~~---~~~~~~~~  308 (397)
                      + ..+..+.+++... .++++++.++.+++++++.+.|.+ + ++.+...  +.  .....++.+.++.   .+..++.+
T Consensus       249 ~-~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~  325 (391)
T 3dr4_A          249 N-YRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLAR-L-GNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIK  325 (391)
T ss_dssp             B-CBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGG-G-TTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHH
T ss_pred             c-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CccccCcCCCCCCcceeEEEEEEECCccchhHHHHHH
Confidence            1 1112222333322 235677888899999999999998 5 6666654  22  1223455666653   45778888


Q ss_pred             HhC--CcEecccC---ccCCCCCChhhHHHh-----hCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         309 AIK--DIAVSSGS---ACTSASLEPSYVLRA-----LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       309 ~l~--~i~~~~g~---~~~~~~~~~~~~~~~-----~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .|.  ||.+.++.   .+.+       .+..     +..........+|+++...+|++||++++++|++++
T Consensus       326 ~L~~~GI~v~~~~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          326 DLDALGIESRPVFHPMHIMP-------PYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             HHHHTTCCCEECCCCGGGSG-------GGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCceeecCCccccCh-------hhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            886  88888775   2222       0000     000112235789999999999999999999998653

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.97  E-value=7.3e-28  Score=225.76  Aligned_cols=309  Identities=13%  Similarity=0.087  Sum_probs=218.4

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g  110 (397)
                      .|.+++...+...++++.++++++.+ +.+++ ++|++|+.+++.++.    ++|++|+++.++|+++...+... ...|
T Consensus        43 ~~~~~~~~~~~~~~l~~~la~~~~~~-~~i~~-~sGt~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~~~~~g  116 (386)
T 1cs1_A           43 AHDYSRRGNPTRDVVQRALAELEGGA-GAVLT-NTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGC  116 (386)
T ss_dssp             SCSBTTTCCHHHHHHHHHHHHHHTCS-EEEEE-SSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred             CcceeCCCCccHHHHHHHHHHHhCCC-cEEEe-CCHHHHHHHHHHHHh----CCCCEEEEecCCcHhHHHHHHHHHHhcC
Confidence            34445555577889999999999987 45665 555999999999886    78999999999999987766544 3459


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      .++..++.+     |++++++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+...... .+++|
T Consensus       117 ~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~d  190 (386)
T 1cs1_A          117 YRVLFVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-ALGAD  190 (386)
T ss_dssp             CEEEEECTT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCS
T ss_pred             CEEEEeCCC-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-ccCce
Confidence            999999875     899999999999999999999999999999999999999999999999999977654333 35789


Q ss_pred             EEEeccccc-cCCCCc--eEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKI-YGPKGI--GALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K~-~g~~g~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      +++.|+||. .++.+.  |++++++ +..+.+.+...++       .++.+....++...+++.    +....++..++.
T Consensus       191 i~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~  259 (386)
T 1cs1_A          191 LVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI-------GVTGGAFDSYLLLRGLRT----LVPRMELAQRNA  259 (386)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-------TCBCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred             EEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhcccH----HHHHHHHHHHHH
Confidence            999999994 455442  9999986 4444444433221       123343333333344443    344566677778


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCChHHHHHHhC--CcEecc---c------Ccc
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIEGESLLMAIK--DIAVSS---G------SAC  321 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~---g------~~~  321 (397)
                      +.+.+.|++ ++.+.....+.              ...+.++.+.+++. ..++...|.  ||.+..   |      ..|
T Consensus       260 ~~l~~~l~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~  337 (386)
T 1cs1_A          260 QAIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGLSLFTLAESLGGVESLISHA  337 (386)
T ss_dssp             HHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEG
T ss_pred             HHHHHHHhc-CCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhCCcceEcccCCCcceeeecc
Confidence            888888887 66654331111              12356777777653 456666664  777763   2      111


Q ss_pred             CC--CCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         322 TS--ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       322 ~~--~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ..  ....++..+...|+..    +++||+++...++++++.+.++|+++
T Consensus       338 ~~~~~~~~~~~~~~~~g~~~----~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          338 ATMTHAGMAPEARAAAGISE----TLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             GGTTTTTSCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHhcCCCC----CeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            11  1112334556666653    89999999888888888888777654

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.96  E-value=1.3e-27  Score=226.80  Aligned_cols=337  Identities=16%  Similarity=0.120  Sum_probs=228.8

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      +|+.+++++.+.+...       .|..   ..+...++++.++++++.+  ++++++|+++|+.+++.++.     +|++
T Consensus        30 ~p~~~~~a~~~~~~~~-------~y~~---~~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~-----~gd~   92 (424)
T 2po3_A           30 DRARLYERLDRALDSQ-------WLSN---GGPLVREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG-----LTGE   92 (424)
T ss_dssp             CHHHHHHHHHHHHHHT-------CCSS---SCHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT-----CCSE
T ss_pred             ChHHHHHHHHHHHhcC-------Cccc---CCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC-----CCCE
Confidence            4578999998888641       1111   1246788999999999975  89999999999999999874     5799


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCc
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV  167 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi  167 (397)
                      |++++++|+++...+...   |.+++.++.++ ++.+|+++|++++++++++|++++   |+|...++++|.++|+++|+
T Consensus        93 Vlv~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i~~la~~~~~  166 (424)
T 2po3_A           93 VIMPSMTFAATPHALRWI---GLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAADQLRKVADEHGL  166 (424)
T ss_dssp             EEEESSSCTHHHHHHHHT---TCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHTTC
T ss_pred             EEECCCccHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHHHHHHHHHHcCC
Confidence            999999999999877766   99999999985 678999999999998999998864   79999999999999999999


Q ss_pred             EEEEecccccCccccccCcc--cccEEEeccc--cccCCCCceEEEEe-cCCCCccccccccCCcc-ccc-cCCCC-chh
Q psy8850         168 IFHCDAAQAVGKIDINIQNY--KVDLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGHE-YGL-RSGTL-ATH  239 (397)
Q Consensus       168 ~livD~a~~~~~~~~~~~~~--~~d~~~~s~~--K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~-~~~-~~~~~-~~~  239 (397)
                      ++|+|++|+.|.. ++...+  ..|++++|+|  |.+++..+|+++.+ ++..+.+......+... ... ..+.+ ...
T Consensus       167 ~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~  245 (424)
T 2po3_A          167 RLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMS  245 (424)
T ss_dssp             EEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCC
T ss_pred             EEEEECccccCCe-ECCeecccccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcC
Confidence            9999999996553 221111  2579999988  75554456888887 44444444332211100 000 01111 111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEec----CCChHHHHHHhC--
Q psy8850         240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN----FIEGESLLMAIK--  311 (397)
Q Consensus       240 ~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~l~--  311 (397)
                      .+.+. .++.. .++++++.++..++++++.+.|.+ ++++.+...+..  ....++.+.++    +.+..++.+.|.  
T Consensus       246 ~~~aa-~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~  322 (424)
T 2po3_A          246 EAAAA-MGLTS-LDAFPEVIDRNRRNHAAYREHLAD-LPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAE  322 (424)
T ss_dssp             HHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHTCS-CTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHT
T ss_pred             HHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHC
Confidence            11111 22221 235667888888899999999988 778887763221  21245556665    356777877776  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCC--Cc---cccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGC--ND---ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~--~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ||.+.+  .|.+.. .....++..|.  .+   ......||+++...++++|+++++++|++++++.++
T Consensus       323 gI~v~~--~~~~~~-~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~  388 (424)
T 2po3_A          323 GVHTRA--YFSPGC-HELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGRE  388 (424)
T ss_dssp             TEECBC--TTCSCG-GGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceec--ccCCcc-ccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence            888876  222100 00000001110  00   001244888877889999999999999999876654

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.96  E-value=2.8e-29  Score=231.98  Aligned_cols=318  Identities=15%  Similarity=0.167  Sum_probs=210.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      |+++...++++.+++++.+....        ..  .|...+...++++.+++++|.+  ++++++||++|+.+++.++. 
T Consensus         8 ~~~~~~~~p~~~~~~a~~~~~~~--------~~--~y~~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~~~~~~~-   74 (347)
T 1jg8_A            8 LRSDTVTKPTEEMRKAMAQAEVG--------DD--VYGEDPTINELERLAAETFGKE--AALFVPSGTMGNQVSIMAHT-   74 (347)
T ss_dssp             CSCGGGCCCCHHHHHHHHTCCCC--------CG--GGTCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC-
T ss_pred             eccccCCCCCHHHHHHHhcCCCC--------Cc--ccCCChHHHHHHHHHHHHhCCc--eEEEecCcHHHHHHHHHHhc-
Confidence            45566667788888887644211        11  1222345778999999999986  68889999999999888876 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCcc-cccc
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEI-GVIQ  153 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~t-G~~~  153 (397)
                         ++||+|++++++|.+...........|.+++.+ .++++.+|++++++++++      ++++|++++++||| |.++
T Consensus        75 ---~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~  150 (347)
T 1jg8_A           75 ---QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVV  150 (347)
T ss_dssp             ---CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCC
T ss_pred             ---CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccC
Confidence               789999999999877543211222238899888 555677899999999975      68999999999999 9998


Q ss_pred             cH---HHHHHHHHhcCcEEEEecccccCcc---ccccC--cccccEEEeccccccCCCCce-EEEEecCCCCcccccccc
Q psy8850         154 PI---LEIGELCRSKGVIFHCDAAQAVGKI---DINIQ--NYKVDLMSFSAHKIYGPKGIG-ALYIRRNPRTRIEAQIHG  224 (397)
Q Consensus       154 ~l---~~i~~l~~~~gi~livD~a~~~~~~---~~~~~--~~~~d~~~~s~~K~~g~~g~g-~~~~~~~~~~~~~~~~~~  224 (397)
                      |.   ++|+++|++||+++|+|++|.++..   ..+..  ..+.|.+++|+||.++++ .| +++.+++..+.+......
T Consensus       151 ~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~-~G~~~~~~~~~~~~~~~~~~~  229 (347)
T 1jg8_A          151 PLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIERARKARKM  229 (347)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC-ceEEEEcCHHHHHHHHHHHHH
Confidence            85   6788999999999999998754221   11111  125788888999954432 35 555565444433221111


Q ss_pred             CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCC
Q psy8850         225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIE  302 (397)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  302 (397)
                      .+  .  ..........++. .+++...+   . .++..++++++.+.|++ + ++.+...+.  .+.++++.++  +.+
T Consensus       230 ~~--~--~~~~~~~~~~~~~-~~l~~~~~---~-~~~~~~~~~~l~~~L~~-~-~~~~~~~~~--~~~~~~~~~~~~~~~  296 (347)
T 1jg8_A          230 LG--G--GMRQAGVLAAAGI-IALTKMVD---R-LKEDHENARFLALKLKE-I-GYSVNPEDV--KTNMVILRTDNLKVN  296 (347)
T ss_dssp             HT--C--CCSSTHHHHHHHH-HHHHHSST---T-HHHHHHHHHHHHHHHHH-H-TCBCCGGGC--CSSEEEEECTTSSSC
T ss_pred             cC--C--chhHHHHHHHHHH-HHHHHHHH---H-HHHHHHHHHHHHHHHHh-c-CceeccCCC--cceEEEEEcccccCC
Confidence            00  0  0001111222222 33432221   1 22334567888888888 5 554422111  2456677776  356


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ..++.+.|.  ||.+.++.                       .+++|++++..++++++++++++|++++++
T Consensus       297 ~~~~~~~l~~~gi~v~~~~-----------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          297 AHGFIEALRNSGVLANAVS-----------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             HHHHHHHHHHHTEECEEEE-----------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCEEecCC-----------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            778887776  88877531                       268999998888999999999999998764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.96  E-value=1.9e-29  Score=239.20  Aligned_cols=338  Identities=14%  Similarity=0.163  Sum_probs=222.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      .++..++++.|++++.+.+...+  +++.+..+............+++.++++++++++++++ ++|++|+..++.++. 
T Consensus        36 ~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~-~sGs~a~~~a~~~~~-  113 (420)
T 3gbx_A           36 IASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQP-HSGSQANFAVYTALL-  113 (420)
T ss_dssp             CTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHHC-
T ss_pred             eccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEe-cCcHHHHHHHHHHhc-
Confidence            34555689999999999885534  45544222222222344556778999999998665655 555889999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHH--HhhCCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~--~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                         ++||+|+++.++|+++......  ....+..+..++.+.++.+|+++|++++++ ++++|++++++|+  ...|+++
T Consensus       114 ---~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~  188 (420)
T 3gbx_A          114 ---QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAK  188 (420)
T ss_dssp             ---CTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHH
T ss_pred             ---CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHH
Confidence               7999999999999885422221  111145666677777788999999999987 6999999888775  5789999


Q ss_pred             HHHHHHhcCcEEEEecccccCcc-----ccccCcccccEEEeccccc-cCCCCceEEEEec---CCCCccccccccCCcc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHKI-YGPKGIGALYIRR---NPRTRIEAQIHGGGHE  228 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~---~~~~~~~~~~~~~~~~  228 (397)
                      |.++|++||+++|+|++|+.+..     +..+.  .+|++++|+||. .|+.| |+++.++   +....+......    
T Consensus       189 l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~----  261 (420)
T 3gbx_A          189 MREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFP----  261 (420)
T ss_dssp             HHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC-----
T ss_pred             HHHHHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCC----
Confidence            99999999999999999874433     22222  489999999994 46765 8888886   232233222211    


Q ss_pred             ccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGES  305 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  305 (397)
                        ...++++...+.++..++... .++++++.+++.++++++.+.|.+  .++.+..+..  ...++++.++  +.+...
T Consensus       262 --~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~  335 (420)
T 3gbx_A          262 --SAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN--RGYKVVSGGT--ENHLFLLDLVDKNLTGKE  335 (420)
T ss_dssp             -----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECGGGTCCHHH
T ss_pred             --CCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--cCCeeccCCC--CCeEEEEEcCCCCCCHHH
Confidence              112355566666666666544 456788899999999999999998  6777765311  1456666664  345666


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +...|.  ||.+.+......             .........+||+++..    .+++++++++++|++++++.
T Consensus       336 ~~~~l~~~gi~v~~~~~~~~-------------~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~  396 (420)
T 3gbx_A          336 ADAALGRANITVNKNSVPND-------------PKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI  396 (420)
T ss_dssp             HHHHHHHTTEECEEECCTTC-------------SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCcEeccccCCCC-------------ccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence            666665  888887322111             00111235699998643    45899999999999887553

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.96  E-value=5.3e-28  Score=229.92  Aligned_cols=325  Identities=8%  Similarity=0.032  Sum_probs=221.4

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---cC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---KR   85 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---~~   85 (397)
                      +++++++++.+++.....++.. .+.     .+...++++.++++++.++++|++++|+++|++++++++.....   ++
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~-~~~-----~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~  133 (429)
T 1s0a_A           60 NHPQLNAAMKSQIDAMSHVMFG-GIT-----HAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEA  133 (429)
T ss_dssp             SCHHHHHHHHHHHHHCSCCCCS-SEE-----CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHhccccccc-ccC-----CHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCC
Confidence            6899999999998763322111 111     23457788899999998888999999999999999986542211   15


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhh-----------CCcEEEEeccCC------CCCCCHHHHHHHhc---CCceEEEEecc
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLEN-----------DGFRVTYLKPKN------NGLITLSQLEEKIC---SDTILVSVMLV  145 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~-----------~g~~v~~v~~~~------~~~~d~~~l~~~i~---~~~~~v~~~~~  145 (397)
                      +++|++.++.|+++......+..           ....+..++.+.      .+.+|+++|+++++   +++++|+++++
T Consensus       134 ~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~  213 (429)
T 1s0a_A          134 RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPI  213 (429)
T ss_dssp             CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSS
T ss_pred             CCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence            88999999888765443332210           011344555532      23589999999987   46778888877


Q ss_pred             -cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecC
Q psy8850         146 -NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRN  213 (397)
Q Consensus       146 -~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~  213 (397)
                       +||||.+.|    +++|+++|++||+++|+|++|+ ++..    ..+.....+|++++  +| +.|+ .++|+++++++
T Consensus       214 ~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~--sK~l~~G~~~iG~~~~~~~  291 (429)
T 1s0a_A          214 VQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCL--GKALTGGTMTLSATLTTRE  291 (429)
T ss_dssp             EECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTSSSCCEEEEECHH
T ss_pred             ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEEe--cccccCCCccceEEEeCHH
Confidence             899998877    8999999999999999999997 4322    12222335777755  49 6555 57899999875


Q ss_pred             CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CcEEEeCCCCCCC
Q psy8850         214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI---EEIYINGDMNNRI  290 (397)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~  290 (397)
                      ..+.+..... ..... ......|...+++..++++.+.+  ..+.+++.++++++.+.|++ +   +++......    
T Consensus       292 ~~~~l~~~~~-~~~~~-~~t~~~n~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~~~----  362 (429)
T 1s0a_A          292 VAETISNGEA-GCFMH-GPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAP-ARDAEMVADVRVL----  362 (429)
T ss_dssp             HHHHHHTSTT-SSCSC-CCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGG-GGGCTTEEEEEEE----
T ss_pred             HHHHhhcCCC-ccccc-CCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-HhcCCCEEEEEEe----
Confidence            5443332100 00000 11223456667777788887654  35677888889999999987 4   455433221    


Q ss_pred             CceEEEEecC-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHH
Q psy8850         291 PHNLNISFNF-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       291 ~~~~~~~~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (397)
                      +.++++.++. .+..++...|.  ||.+.+.                        ++++||+++..++++++++++++|+
T Consensus       363 g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~------------------------~~~iRis~~~~~t~e~i~~~~~~l~  418 (429)
T 1s0a_A          363 GAIGVVETTHPVNMAALQKFFVEQGVWIRPF------------------------GKLIYLMPPYIILPQQLQRLTAAVN  418 (429)
T ss_dssp             TTEEEEEESSCBCHHHHHHHHHHTTEECCCB------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             eEEEEEEECCcccHHHHHHHHHHCCCEEecc------------------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3466677764 45667777765  7777642                        2789999998899999999999999


Q ss_pred             HHHHHHH
Q psy8850         368 MKVKKLR  374 (397)
Q Consensus       368 ~~~~~~~  374 (397)
                      +++++++
T Consensus       419 ~~~~~~~  425 (429)
T 1s0a_A          419 RAVQDET  425 (429)
T ss_dssp             HHTSSGG
T ss_pred             HHHHhhh
Confidence            8876543

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.96  E-value=9.6e-29  Score=230.17  Aligned_cols=327  Identities=16%  Similarity=0.133  Sum_probs=220.7

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccCCC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKRGK   87 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~g~   87 (397)
                      .++++.+++.+.+....       +.    ..+...++++.++++++.+  ++++++|||+|+.+++.++ .    ++||
T Consensus        14 ~~~~v~~a~~~~~~~~~-------~~----~~~~~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~----~~gd   76 (367)
T 3nyt_A           14 IKDKIDAGIQRVLRHGQ-------YI----LGPEVTELEDRLADFVGAK--YCISCANGTDALQIVQMALGV----GPGD   76 (367)
T ss_dssp             HHHHHHHHHHHHHHHCC-------CS----SCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC----CTTC
T ss_pred             cCHHHHHHHHHHHhcCC-------cc----CChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCC----CCcC
Confidence            35677888877776521       11    1235788999999999987  7999999999999999988 5    7899


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC-CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG  166 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~-~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g  166 (397)
                      +|+++.++|+++...+...   |.+++.++.+++ +.+|++++++++++++++|+   ++||+|...|+++|.++|++||
T Consensus        77 ~Vi~~~~~~~~~~~~~~~~---G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~  150 (367)
T 3nyt_A           77 EVITPGFTYVATAETVALL---GAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYG  150 (367)
T ss_dssp             EEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTT
T ss_pred             EEEECCCccHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcC
Confidence            9999999999999888776   999999999854 88999999999999999887   6678999999999999999999


Q ss_pred             cEEEEecccccCccccccCcccc--cEEEecc--ccccCCCC-ceEEEEecC-CCCccccccccCCcc------ccccCC
Q psy8850         167 VIFHCDAAQAVGKIDINIQNYKV--DLMSFSA--HKIYGPKG-IGALYIRRN-PRTRIEAQIHGGGHE------YGLRSG  234 (397)
Q Consensus       167 i~livD~a~~~~~~~~~~~~~~~--d~~~~s~--~K~~g~~g-~g~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~  234 (397)
                      +++|+|++|+.|.. .+....+.  |++++|+  +|.+|+.| .|+++.+++ ....+......+...      .++...
T Consensus       151 ~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~  229 (367)
T 3nyt_A          151 IPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSR  229 (367)
T ss_dssp             CCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCC
T ss_pred             CEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCC
Confidence            99999999997664 22222222  9999996  89666533 577777533 333333322221110      011111


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEecCCChHHHHHHhC-
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNFIEGESLLMAIK-  311 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~-  311 (397)
                       .+....+.....++    .+++..++.+++++++.+.|++ + ++.+...+..  .....+.+.++  +..++.+.|. 
T Consensus       230 -~~~~~aa~~~~~l~----~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~  300 (367)
T 3nyt_A          230 -LDTLQAAILLPKLE----IFEEEIALRQKVAAEYDLSLKQ-V-GIGTPFIEVNNISVYAQYTVRMD--NRESVQASLKA  300 (367)
T ss_dssp             -CCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCTTEECCCSSEEEECS--SHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcc-C-CeeccCCCCCCceeeEEEEEEeC--CHHHHHHHHHH
Confidence             22222222222332    3456677888888999999988 5 3433322221  22334445544  5677888886 


Q ss_pred             -CcEecccCccCCCCCChhh--HHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         312 -DIAVSSGSACTSASLEPSY--VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       312 -~i~~~~g~~~~~~~~~~~~--~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                       ||.+..+... +....+.+  ....++.........||+++...+|++||+++++.|++.
T Consensus       301 ~GI~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          301 AGVPTAVHYPI-PLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             HTCCCBCSCSS-CGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             CCCceeccCCC-ccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence             8877765321 10000000  000011112234578999999999999999999999754

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.96  E-value=1.8e-29  Score=240.49  Aligned_cols=281  Identities=16%  Similarity=0.114  Sum_probs=213.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc--
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--  118 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~--  118 (397)
                      ....++++.+++ +|++ +++++++|+|+|+.+++.++.    ++||+|+++.++|+++..++...   |.+++.++.  
T Consensus        57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~----~~gd~Vlv~~~~h~s~~~~~~~~---G~~~~~v~~~~  127 (446)
T 2x3l_A           57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS----QKKGDILMARNVHKSVLHALDIS---QQEGHFIETHQ  127 (446)
T ss_dssp             SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT----TSSSCEEECTTCCHHHHHHHHHH---TCCEEECEEEE
T ss_pred             hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc----CCCCEEEEecCccHHHHHHHHHc---CCeEEEEeCee
Confidence            367889999999 9987 679999999999999999987    79999999999999999998887   899999988  


Q ss_pred             CCC----CCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc-----ccccCcccc
Q psy8850         119 KNN----GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKV  189 (397)
Q Consensus       119 ~~~----~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~~~  189 (397)
                      +++    +.+|++++   +.+++++|++++ .|++|.+.|+++|+++|++||+++|+|++|+. ..     +.+....++
T Consensus       128 ~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~g~  202 (446)
T 2x3l_A          128 SPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNYQA  202 (446)
T ss_dssp             CTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGGTC
T ss_pred             ccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHcCC
Confidence            554    56788887   566889999998 67799999999999999999999999999985 22     344444578


Q ss_pred             cEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQK  267 (397)
Q Consensus       190 d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~-~~~~~~~~~~~~~  267 (397)
                      |++++|+|| ++|+.|+|+++++++... ..+....+   ..+..++++...++++.++++++... .+++.++..++++
T Consensus       203 Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~~---~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~  278 (446)
T 2x3l_A          203 DYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEYL---SYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIE  278 (446)
T ss_dssp             SEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHHH---HHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CEEEECCccccccccccEEEEEcCCcCC-HHHHHHHH---HHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            999999999 888888999999987654 22221111   12345677888888887788877652 3446666666666


Q ss_pred             HHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEec-ccCccCCCCCChhhHHHhhCCCccccCc
Q psy8850         268 RLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVS-SGSACTSASLEPSYVLRALGCNDELAHS  344 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~  344 (397)
                      ++++.      ++.+..+..   +..+++.+++.+..++.+.|.  ||.+. +|                        .+
T Consensus       279 ~l~~~------g~~~~~~~~---~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g------------------------~~  325 (446)
T 2x3l_A          279 CLENK------GFEMLQVDD---PLKLLIKYEGFTGHDIQNWFMNAHIYLELAD------------------------DY  325 (446)
T ss_dssp             HHHHH------TCEEEECSS---TTEEEEECTTSCHHHHHHHHHHTTEEESEEC------------------------SS
T ss_pred             HHHHc------CCEECcCCC---CeEEEEEeCCcCHHHHHHHHHHCCCEEEecC------------------------CC
Confidence            66665      455554432   335677776667778887775  77775 33                        26


Q ss_pred             eEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         345 SIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       345 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ++|++++..++++++ +++++|+++++++
T Consensus       326 ~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          326 QALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             CEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             EEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence            899999988899999 9999999987655

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.96  E-value=6e-28  Score=226.35  Aligned_cols=303  Identities=14%  Similarity=0.135  Sum_probs=209.4

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g  110 (397)
                      .+.+++...+...++++.+++++|.+  +.++++||++|+.+++.++.    ++||+|+++.+.|+++...+.. +...|
T Consensus        50 ~~~y~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g  123 (389)
T 3acz_A           50 GHIYSRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFL----QKGDHLIAGDTLYGCTVSLFTHWLPRFG  123 (389)
T ss_dssp             CCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTC----CTTCEEEEESSCCHHHHHHHHHHHHHTT
T ss_pred             CcccCCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcC
Confidence            34444444567889999999999987  67777888999999999876    7899999999999998877654 34459


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc--ccccCccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI--DINIQNYK  188 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~--~~~~~~~~  188 (397)
                      .+++.++..     |++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..  +++   ++
T Consensus       124 ~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~  195 (389)
T 3acz_A          124 IEVDLIDTS-----DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LG  195 (389)
T ss_dssp             CEEEEECTT-----CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TT
T ss_pred             CEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cC
Confidence            999999874     89999999999999999999999999999999999999999999999999986653  333   47


Q ss_pred             ccEEEecccc-ccCCCC--ceEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         189 VDLMSFSAHK-IYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILF  264 (397)
Q Consensus       189 ~d~~~~s~~K-~~g~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~  264 (397)
                      +|+++.|++| +.|+.+  .|++++++ +..+.+......      + .++.+....+.....++.    +..+.++..+
T Consensus       196 ~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~------~-g~~~~~~~~~~~~~~l~~----l~~r~~~~~~  264 (389)
T 3acz_A          196 ADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKD------A-GSLMAPMDAFLCARGMKT----LPIRMQIHME  264 (389)
T ss_dssp             CSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH------H-CCCCCHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred             CeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHh------c-CCCCCHHHHHHHHcCccH----HHHHHHHHHH
Confidence            9999999999 555554  49999987 555555433311      0 112232333333334432    3344556667


Q ss_pred             HHHHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCChHHHHHHhC--CcEecc---c------C
Q psy8850         265 LQKRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIEGESLLMAIK--DIAVSS---G------S  319 (397)
Q Consensus       265 ~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~---g------~  319 (397)
                      ++..+.+.|++ .+.+...-.+.              ...+.++.|.+++  ..+....+.  ++.+..   |      .
T Consensus       265 ~~~~l~~~l~~-~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~  341 (389)
T 3acz_A          265 NGLKVAKFLEQ-HEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHLKVCTLAVSLGCVDTLIE  341 (389)
T ss_dssp             HHHHHHHHHHH-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTCSSSEEBSCCCCSSCEEE
T ss_pred             HHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhCCCcEECcCCCCcccEee
Confidence            77778888877 55443221111              1235677788765  455555554  665554   4      3


Q ss_pred             ccCCCC--CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         320 ACTSAS--LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       320 ~~~~~~--~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                      .|....  .-++..+...|+..    +.||+|++...+++.++.+.++|
T Consensus       342 ~~~~~~~~~~~~~~~~~~g~~~----~~iRlsvg~~~~~~li~~l~~al  386 (389)
T 3acz_A          342 HPASMTHAAVPENIMRKQGITP----ELVRISVGIENVDDIIADLKQAL  386 (389)
T ss_dssp             CTTTTTTSSSCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHH
T ss_pred             CCcccccccCCHHHHHhcCCCc----CeEEEEeccCCHHHHHHHHHHHH
Confidence            332211  11234456666653    89999999865444444444444

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.96  E-value=2.2e-28  Score=230.06  Aligned_cols=301  Identities=13%  Similarity=0.101  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEecc
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP  118 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~  118 (397)
                      .+...++++.++++++.+ +.+++ ++|++|+.+++. +.    ++||+|+++.+.|+++...+..+ ...|.+++.++.
T Consensus        66 ~p~~~~l~~~la~~~g~~-~~i~~-~sG~~ai~~~~~-l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~  138 (403)
T 3cog_A           66 NPTRNCLEKAVAALDGAK-YCLAF-ASGLAATVTITH-LL----KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDC  138 (403)
T ss_dssp             CHHHHHHHHHHHHHHTCS-EEEEE-SCHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred             CchHHHHHHHHHHHhCCC-cEEEE-CCHHHHHHHHHH-Hh----CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECC
Confidence            356788999999999987 44555 455789999988 76    78999999999999987766543 344999999987


Q ss_pred             CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcC-cEEEEecccccCccccccCcccccEEEeccc
Q psy8850         119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG-VIFHCDAAQAVGKIDINIQNYKVDLMSFSAH  197 (397)
Q Consensus       119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~g-i~livD~a~~~~~~~~~~~~~~~d~~~~s~~  197 (397)
                      +     |++++++++++++++|++++++||||.+.|+++|+++|+++| +++|+|++|+.+.....+ .+++|+++.|++
T Consensus       139 ~-----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~-~~~~div~~S~s  212 (403)
T 3cog_A          139 S-----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL-ALGADISMYSAT  212 (403)
T ss_dssp             T-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT-TTTCSEEEEETT
T ss_pred             C-----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc-ccCCeEEEEcCh
Confidence            6     899999999999999999999999999999999999999999 999999999876532222 257999999999


Q ss_pred             c-ccCCCC--ceEEEEe-cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         198 K-IYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL  273 (397)
Q Consensus       198 K-~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l  273 (397)
                      | +.|+.+  +|+++++ ++..+.+.....++       .++.+....+....+++.+    ..+.++..++...+.+.+
T Consensus       213 K~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~-------g~~~~~~~~~~~~~~l~~l----~~r~~~~~~n~~~l~~~l  281 (403)
T 3cog_A          213 KYMNGHSDVVMGLVSVNCESLHNRLRFLQNSL-------GAVPSPIDCYLCNRGLKTL----HVRMEKHFKNGMAVAQFL  281 (403)
T ss_dssp             TTTTCSSCCCCEEEEECCHHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCCCeEEEEEECcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHH
Confidence            9 555554  4999886 34444444332221       1233444444443455433    334445555566666666


Q ss_pred             hhhcCcEE--------------EeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe---cccC------ccCCC--CC
Q psy8850         274 MESIEEIY--------------INGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV---SSGS------ACTSA--SL  326 (397)
Q Consensus       274 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~---~~g~------~~~~~--~~  326 (397)
                      ++ .+.+.              +..+.....++++.+.+++. ..+....+.  ++..   ..|.      ++...  ..
T Consensus       282 ~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~  359 (403)
T 3cog_A          282 ES-NPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-LQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHAS  359 (403)
T ss_dssp             HT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-HHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTT
T ss_pred             hc-CCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-HHHHHHHHHhCCcceEccCCCCcceeeeccccccccc
Confidence            55 33222              11111112366777777642 233333333  5432   2342      12111  01


Q ss_pred             ChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         327 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .++......|+.    .+.||||++..+++++|+.+.++|++++
T Consensus       360 ~~~~~~~~~g~~----~~~iRlSvg~e~~~d~i~~l~~al~~~~  399 (403)
T 3cog_A          360 VLKNDRDVLGIS----DTLIRLSVGLEDEEDLLEDLDQALKAAH  399 (403)
T ss_dssp             SCHHHHHHHTCC----TTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHhcCCC----cCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence            223445566664    3899999999888888888777776543

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.96  E-value=1.9e-29  Score=237.24  Aligned_cols=314  Identities=13%  Similarity=0.067  Sum_probs=215.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC--CCCcEEE--eCChhHHHHHHHHHhH
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA--DPREIIW--TSGATESNNLAIKGAA   79 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~--~~~~i~~--~~g~t~a~~~~l~~l~   79 (397)
                      +..++++.+.+++.+.+...  .. . .|..    .....++++.+++++ +.  ++++|++  |+|+++|+++++.++.
T Consensus        41 ~~~~~~~~v~~a~~~~~~~~--~~-~-~y~~----~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~  112 (394)
T 2ay1_A           41 GHTPIMRAVHAAEQRMLETE--TT-K-TYAG----LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELAR  112 (394)
T ss_dssp             SCCCCCHHHHHHHHHHHHHC--CC-C-CCCC----SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHH
T ss_pred             CCccCcHHHHHHHHHhcCCc--cc-C-CCCC----CCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHH
Confidence            34467899999999887541  10 0 1111    123567888888886 55  6678999  9999999999998775


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcC---CceEEEEecccCccccccc
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~  154 (397)
                      ..  .+||+|+++.++|+++...+...   |.+++.+|.+  +++.+|++++++++++   +++++++++++||||.++|
T Consensus       113 ~~--~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~  187 (394)
T 2ay1_A          113 MA--NPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLT  187 (394)
T ss_dssp             HH--CTTCCEEEEESCCHHHHHHHHHH---TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCC
T ss_pred             hc--CCCCEEEEcCCCChhHHHHHHHc---CCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC
Confidence            21  38899999999999998887777   8999999985  5677899999999875   3678888999999999988


Q ss_pred             ---HHHHHHHHHhcCcEEEEecccccCcc-------ccc-cCccc-ccEEEeccccccCCCC--ceEEEE---ecCCCCc
Q psy8850         155 ---ILEIGELCRSKGVIFHCDAAQAVGKI-------DIN-IQNYK-VDLMSFSAHKIYGPKG--IGALYI---RRNPRTR  217 (397)
Q Consensus       155 ---l~~i~~l~~~~gi~livD~a~~~~~~-------~~~-~~~~~-~d~~~~s~~K~~g~~g--~g~~~~---~~~~~~~  217 (397)
                         +++|+++|++||+++|+|++|+....       ++. +...+ .++++.|+||.+|+.|  +|++++   +++....
T Consensus       188 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~  267 (394)
T 2ay1_A          188 LDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATREL  267 (394)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHH
Confidence               45789999999999999999985322       121 21112 3477889999777556  599887   3322222


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCC
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNN  288 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~  288 (397)
                      +...+..   ..+...++++.....++.++++..      .++++++.++++++++++.+.|++ +.   ++.+..+.. 
T Consensus       268 l~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~-  342 (394)
T 2ay1_A          268 AQGAMAF---LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD-LSGSDRFGFVAEHR-  342 (394)
T ss_dssp             HHHHHHH---HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTTHHHHCC-
T ss_pred             HHHHHHH---HHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCeeEEcCCc-
Confidence            2111100   001112233445555555666533      346788889999999999999988 42   243333221 


Q ss_pred             CCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         289 RIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                        +.++++.   .+...+...+.  ||.+.+|                           +||+++ .++++++++++++|
T Consensus       343 --g~~~~~~---~~~~~~~~~l~~~gi~v~~~---------------------------~Ris~~-~~~~~~i~~~~~~l  389 (394)
T 2ay1_A          343 --GMFSRLG---ATPEQVKRIKEEFGIYMVGD---------------------------SRINIA-GLNDNTIPILARAI  389 (394)
T ss_dssp             --SSEEECC---CCHHHHHHHHHHHCEECCTT---------------------------CEEEGG-GCCTTTHHHHHHHH
T ss_pred             --eEEEeeC---CCHHHHHHHHHhCCEEecCC---------------------------CeEEee-cCCHhhHHHHHHHH
Confidence              2333333   33445555553  7777642                           599998 47899999999999


Q ss_pred             HHH
Q psy8850         367 KMK  369 (397)
Q Consensus       367 ~~~  369 (397)
                      +++
T Consensus       390 ~~~  392 (394)
T 2ay1_A          390 IEV  392 (394)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            875

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.96  E-value=2.1e-28  Score=233.42  Aligned_cols=303  Identities=17%  Similarity=0.184  Sum_probs=202.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEecc
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP  118 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~  118 (397)
                      .+...++++++++++|.+  ++++++||++|+.+++. +.    ++||+|+++.+.|+++...+..+ ...|.+++.+|.
T Consensus       132 ~~~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~-~~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~  204 (464)
T 1ibj_A          132 NPTRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-LI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT  204 (464)
T ss_dssp             CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred             CHHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-Hh----CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence            346888999999999976  77888888999988775 44    78999999999999998766543 334999999987


Q ss_pred             CCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc
Q psy8850         119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK  198 (397)
Q Consensus       119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K  198 (397)
                      +     |++++++++++++++|++++++||||.+.|+++|+++|++||+++|+|++|+.+.....+ .+++|+++.|+||
T Consensus       205 ~-----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~-~~~~div~~S~sK  278 (464)
T 1ibj_A          205 T-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVMHSATK  278 (464)
T ss_dssp             T-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG-GTTCSEEEEETTT
T ss_pred             C-----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCEEEEECCcc
Confidence            5     899999999999999999999999999999999999999999999999999876542112 2579999999999


Q ss_pred             -ccCCCCc--eEEEEec-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy8850         199 -IYGPKGI--GALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN---  271 (397)
Q Consensus       199 -~~g~~g~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~---  271 (397)
                       +.|+.|+  |++++++ +..+.+......       ..+..+....++...+++.....++...+....+.+++.+   
T Consensus       279 ~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~-------~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~  351 (464)
T 1ibj_A          279 FIAGHSDVMAGVLAVKGEKLAKEVYFLQNS-------EGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPR  351 (464)
T ss_dssp             TTTCSSCCCCEEEEECSHHHHHHHHHHHHH-------TTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             cccCCCCCcEEEEEEChHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence             5666554  9999985 343444332210       0112333333333345543322233323333333333322   


Q ss_pred             -------HHhhhcCcEEEeCCCCCCCCceEEEEecCCC-hHHHHHHhC--CcEecccC----ccCCCCCC----hhhHHH
Q psy8850         272 -------GLMESIEEIYINGDMNNRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGS----ACTSASLE----PSYVLR  333 (397)
Q Consensus       272 -------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~----~~~~~~~~----~~~~~~  333 (397)
                             .|.+ ++++.+..+.....++++.+.+++.+ ...+.+.|.  ++.+..|.    .+.+..+.    ++....
T Consensus       352 v~~~~~~~L~~-~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~  430 (464)
T 1ibj_A          352 VKKVYYAGLPD-HPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVRE  430 (464)
T ss_dssp             CCEEECTTSTT-STTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSS
T ss_pred             ceEEECCCCCC-CcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHH
Confidence                   2332 33444433332223567778775322 234677765  77777775    33331110    000111


Q ss_pred             hhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         334 ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       334 ~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ..|..    .++||++++.    ++++++++.|+++++
T Consensus       431 ~~g~~----~~~iRlsvg~----edi~~li~~L~~al~  460 (464)
T 1ibj_A          431 ARGLT----EDLVRISAGI----EDVDDLISDLDIAFK  460 (464)
T ss_dssp             SSSCC----TTCEEEECCS----SCHHHHHHHHHHHHH
T ss_pred             hcCCC----cCeEEEEeCC----CCHHHHHHHHHHHHh
Confidence            22222    4789999996    899999999998875

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.96  E-value=2.1e-28  Score=237.97  Aligned_cols=333  Identities=12%  Similarity=0.064  Sum_probs=218.9

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CC---CCcEEEeCChhHHHHHHHHHhHhh-h
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--AD---PREIIWTSGATESNNLAIKGAAHF-Y   82 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~---~~~i~~~~g~t~a~~~~l~~l~~~-~   82 (397)
                      +++.+++++.+.+... .++     .......+....+.+.+.+.++  .+   +++|++|+|+++|+.+++.++... .
T Consensus       116 ~~~~~v~a~~~~~~~~-~y~-----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l  189 (533)
T 3f6t_A          116 NRDKVVAEWVNGAVAN-NYP-----VPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHL  189 (533)
T ss_dssp             CHHHHHHHHHHHHHTC-SCC-----SSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred             CCcHHHHHHHHHHHhC-CCC-----CCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence            4566776666666431 111     0111222334444444444412  22   358999999999999999983111 1


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC----CCCCCCHHHHHHHhcCCceEEEEecccCcccccccHH--
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK----NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL--  156 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~----~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~--  156 (397)
                      .++||+|+++.++|+++...+...   |.+++.++++    .++.+|+++|++++++++++|++++++||||.++|.+  
T Consensus       190 ~~~gd~Viv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~~~~l  266 (533)
T 3f6t_A          190 LKKGDKIAINEPIFTPYLRIPELK---DYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNAL  266 (533)
T ss_dssp             SCTTCEEEEESSCCHHHHTSGGGG---GSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCCHHHH
T ss_pred             cCCcCEEEEcCCCcHHHHHHHHHc---CCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccCHHHH
Confidence            278999999999999987776655   8899998885    3577899999999999999999999999999999965  


Q ss_pred             -HHHHHHH-hcCcEEEEecccccCcc-cccc--CcccccEEEeccccccCCCC--ceEEEEecC-----CCCcccc----
Q psy8850         157 -EIGELCR-SKGVIFHCDAAQAVGKI-DINI--QNYKVDLMSFSAHKIYGPKG--IGALYIRRN-----PRTRIEA----  220 (397)
Q Consensus       157 -~i~~l~~-~~gi~livD~a~~~~~~-~~~~--~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~-----~~~~~~~----  220 (397)
                       +|+++|+ +||+++|+|++|+.... ...+  ...+.++++.|+||.+|+.|  +|+++++++     .+..+.+    
T Consensus       267 ~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~  346 (533)
T 3f6t_A          267 NAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELR  346 (533)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHH
Confidence             7888888 68999999999983221 1111  11246799999999777666  799999876     2222210    


Q ss_pred             ---------------------ccccCCccccccCCCCchhHHHHHH-HHHHHH---------HHHHHHHHHHHHHHHHHH
Q psy8850         221 ---------------------QIHGGGHEYGLRSGTLATHQIVGMG-EAFRLA---------RIEMKEELKRILFLQKRL  269 (397)
Q Consensus       221 ---------------------~~~~~~~~~~~~~~~~~~~~~~~l~-~al~~~---------~~~~~~~~~~~~~~~~~l  269 (397)
                                           .............++.+.....++. .++..+         ..++++.+++++++++.+
T Consensus       347 ~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l  426 (533)
T 3f6t_A          347 QLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQL  426 (533)
T ss_dssp             HHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence                                 0000001111223334444444321 122222         246778888999999999


Q ss_pred             HHHHhhhcCcEEEeCCCCCCCCceEEEEecC-----------------CChHHHHHHhC---CcEecccCccCCCCCChh
Q psy8850         270 YNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGESLLMAIK---DIAVSSGSACTSASLEPS  329 (397)
Q Consensus       270 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~  329 (397)
                      .+.|.  ++ +.+..+..   +..+++.++.                 .+..++...+.   ||.+.+|..|..+     
T Consensus       427 ~~~L~--~~-~~~~~~~~---g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~-----  495 (533)
T 3f6t_A          427 HDAMQ--AP-KDETDTNT---HYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK-----  495 (533)
T ss_dssp             HHHHT--CC-CCCSTTBC---CSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS-----
T ss_pred             HHhcC--CC-ccccCCCc---eEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCC-----
Confidence            99985  33 33222222   3445555542                 24445554442   8999999877641     


Q ss_pred             hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       330 ~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                                   .+++||+++. .+++++++++++|.++++++.+
T Consensus       496 -------------~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~~~  527 (533)
T 3f6t_A          496 -------------PGELRVSQAN-LPTEDYALIGKQVLELLKEYYE  527 (533)
T ss_dssp             -------------TTEEEEESSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CCEEEEEEee-CCHHHHHHHHHHHHHHHHHHHH
Confidence                         3799999975 5799999999999999988765

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.96  E-value=1.9e-27  Score=223.67  Aligned_cols=307  Identities=13%  Similarity=0.114  Sum_probs=217.7

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +++|+.+++++.+.+.... +..+ .+     ..+...++++.++++++.+++++++++|+++|+.+++.++...  .++
T Consensus        60 g~~~~~v~~a~~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~--~~~  130 (395)
T 1vef_A           60 GHGNPEVVEAVKRQAETLM-AMPQ-TL-----PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH--TGR  130 (395)
T ss_dssp             CBTCHHHHHHHHHHHHHCC-CCCT-TS-----CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHH--HSC
T ss_pred             CCCCHHHHHHHHHHHHhCC-CCcc-cc-----CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHH--hCC
Confidence            4578999999999987632 2111 11     2346788999999999887778999999999999999876311  256


Q ss_pred             CEEEEcCCCChhhHH-HHHHHhhCCcE------------EEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccc
Q psy8850          87 KHIITVQTEHKSVLD-SIRKLENDGFR------------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~-~~~~~~~~g~~------------v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~  153 (397)
                      ++|++.++.|++... .+...   |.+            +..++.     .|++++++++++++++|++++++||||.+.
T Consensus       131 ~~vi~~~~~y~~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~  202 (395)
T 1vef_A          131 KKFVAAMRGFSGRTMGSLSVT---WEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEETAAVILEPVQGEGGVRP  202 (395)
T ss_dssp             CEEEEETTCCCCSSHHHHHTC---CCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTEEEEEECSEETTTTSEE
T ss_pred             CeEEEEcCCcCCCchhhhhhc---CCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccCEEEEEEeCccCCCCccC
Confidence            888888888865443 44332   332            333432     489999999998999999998899999988


Q ss_pred             c----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccc
Q psy8850         154 P----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIH  223 (397)
Q Consensus       154 ~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~  223 (397)
                      |    +++|.++|++||++||+|++|+ ++..    +.+.....+|++  |++| +.++.++|+++++++..+.+.... 
T Consensus       203 ~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~-  279 (395)
T 1vef_A          203 ATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGG-  279 (395)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS-
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCC-
Confidence            8    9999999999999999999998 3211    122223356776  6689 555556899999876444443310 


Q ss_pred             cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--EEEeCCCCCCCCceEEEEecCC
Q psy8850         224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNFI  301 (397)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  301 (397)
                           . ....+.+...+.+..++++.+.+  .++.+++.++++++.+.|++ ++.  +.....    .+.++++.++. 
T Consensus       280 -----~-~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~----~g~~~~~~~~~-  345 (395)
T 1vef_A          280 -----H-GTTFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRA-IPSPKIREVRG----MGLMVGLELKE-  345 (395)
T ss_dssp             -----S-CCSSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHT-SCCTTEEEEEE----ETTEEEEEESS-
T ss_pred             -----c-CCCcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-hhcCceEEEEE----EEEEEEEEEcC-
Confidence                 0 11223455666666678877654  45778888999999999988 542  111111    14567777764 


Q ss_pred             ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      +..++.+.|.   ||.+.++.                       .+++||+++..++++++++++++|++++
T Consensus       346 ~~~~l~~~l~~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          346 KAAPYIARLEKEHRVLALQAG-----------------------PTVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             CSHHHHHHHHHHHCEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            3556666654   78777641                       3789999988899999999999998875

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.96  E-value=5.1e-29  Score=234.43  Aligned_cols=316  Identities=14%  Similarity=0.074  Sum_probs=215.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh---C---CCCCcEEE--eCChhHHHHHH
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI---Y---ADPREIIW--TSGATESNNLA   74 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~---~~~~~i~~--~~g~t~a~~~~   74 (397)
                      ..+..++++.+.+++.+.+....  . . .|.    ......++++.+++++   +   +++++|++  |+|+++|++++
T Consensus        39 ~~~~~~~~~~v~~a~~~~~~~~~--~-~-~y~----~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~  110 (396)
T 2q7w_A           39 ETGKTPVLTSVKKAEQYLLENET--T-K-NYL----GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVA  110 (396)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHHCC--C-C-CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHH
T ss_pred             CCCCccCcHHHHHHHHhhcCccc--c-c-CCC----CCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHH
Confidence            34445778999999988875411  0 0 111    1234577888888887   2   24678988  99999999999


Q ss_pred             HHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcC---CceEEEEecccCcc
Q psy8850          75 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS---DTILVSVMLVNNEI  149 (397)
Q Consensus        75 l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~t  149 (397)
                      +.++...  .+||+|++..++|+++...+...   |.+++.+|.+  +++.+|++++++++++   +++++++++++|||
T Consensus       111 ~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~npt  185 (396)
T 2q7w_A          111 ADFLAKN--TSVKRVWVSNPSWPNHKSVFNSA---GLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPT  185 (396)
T ss_dssp             HHHHHHH--SCCCEEEEEESCCTHHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTT
T ss_pred             HHHHHHh--CCCCEEEEcCCCchhHHHHHHHc---CCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCC
Confidence            8866421  48899999999999998887776   9999999985  5677899999999975   47788999999999


Q ss_pred             ccccc---HHHHHHHHHhcCcEEEEecccccCcc-------ccc-cCc-ccccEEEeccccccCCCC--ceEEEE---ec
Q psy8850         150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI-------DIN-IQN-YKVDLMSFSAHKIYGPKG--IGALYI---RR  212 (397)
Q Consensus       150 G~~~~---l~~i~~l~~~~gi~livD~a~~~~~~-------~~~-~~~-~~~d~~~~s~~K~~g~~g--~g~~~~---~~  212 (397)
                      |.++|   +++|+++|++||+++|+|++|+....       ++. +.. .+.++++.|++|.+|+.|  +|++++   ++
T Consensus       186 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~  265 (396)
T 2q7w_A          186 GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADS  265 (396)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCH
Confidence            99987   45799999999999999999874321       111 111 135688999999777656  699887   33


Q ss_pred             CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEe
Q psy8850         213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE---EIYIN  283 (397)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~  283 (397)
                      +..+.+...+...   .....++++.....+..++++..      .+++++..+++.++++++.+.|++ +.   ++.+.
T Consensus       266 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~  341 (396)
T 2q7w_A          266 ETVDRAFSQMKAA---IRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE-KGANRDFSFI  341 (396)
T ss_dssp             HHHHHHHHHHHHH---HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TTCCSCCTHH
T ss_pred             HHHHHHHHHHHHH---HhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCccee
Confidence            2111221111000   01112334555555555666532      346777888999999999999988 53   24433


Q ss_pred             CCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHH
Q psy8850         284 GDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDF  361 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~  361 (397)
                      .+..   +.++++.   .+...+...+.  ||.+.+                           .+||+++. .+++++++
T Consensus       342 ~~~~---~~~~~~~---~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~-~~~e~i~~  387 (396)
T 2q7w_A          342 IKQN---GMFSFSG---LTKEQVLRLREEFGVYAVA---------------------------SGRVNVAG-MTPDNMAP  387 (396)
T ss_dssp             HHCC---SSEEECC---CCHHHHHHHHHHHCEECCT---------------------------TCEEEGGG-CCTTTHHH
T ss_pred             cCCC---ceEEEec---CCHHHHHHHHHhcCeeecC---------------------------CceEEEee-cCHHHHHH
Confidence            3222   2222322   33444544443  777763                           25999985 48999999


Q ss_pred             HHHHHHHH
Q psy8850         362 TIKLLKMK  369 (397)
Q Consensus       362 ~~~~l~~~  369 (397)
                      ++++|+++
T Consensus       388 ~~~~l~~~  395 (396)
T 2q7w_A          388 LCEAIVAV  395 (396)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999875

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.96  E-value=2.6e-27  Score=223.53  Aligned_cols=314  Identities=14%  Similarity=0.136  Sum_probs=207.8

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHH-HHhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~-~~~~~g  110 (397)
                      .+.+++...+...++++.+++++|.+  ..++++||++|+.+++.++.    ++||+|+++++.|+++...+. .+...|
T Consensus        73 ~~~y~r~~~p~~~~le~~lA~l~g~~--~~v~~~sG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G  146 (430)
T 3ri6_A           73 GHVYSRSSNPTVEDLEQRLKNLTGAL--GVLALGSGMAAISTAILTLA----RAGDSVVTTDRLFGHTLSLFQKTLPSFG  146 (430)
T ss_dssp             -------CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHTHHHHTT
T ss_pred             CccccCCCCHHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence            34444555578899999999999986  46777788999999999887    899999999999999988665 344459


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      .+++.++.+     |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++|+|++++.+.. .+....++|
T Consensus       147 ~~~~~v~~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~d  220 (430)
T 3ri6_A          147 IEVRFVDVM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVD  220 (430)
T ss_dssp             CEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCS
T ss_pred             CEEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCE
Confidence            999999877     89999999999999999999999999999999999999999999999999997765 344455899


Q ss_pred             EEEeccccccCCCC---ceEEEEecCC-CC---ccccc---------cccCC-ccccccCCCCchhHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKIYGPKG---IGALYIRRNP-RT---RIEAQ---------IHGGG-HEYGLRSGTLATHQIVGMGEAFRLARI  253 (397)
Q Consensus       191 ~~~~s~~K~~g~~g---~g~~~~~~~~-~~---~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~l~~al~~~~~  253 (397)
                      +++.|++|.+|+.|   .|+++.+... ..   +....         +.... .......+..+....+.+...++    
T Consensus       221 iv~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~----  296 (430)
T 3ri6_A          221 IEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLE----  296 (430)
T ss_dssp             EEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHH----
T ss_pred             EEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh----
Confidence            99999999544322   3665544321 10   00000         00000 00000111222222222212222    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC-------------CCCc-eEEEEecCC-ChHHHHHHhC--CcEec
Q psy8850         254 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-------------RIPH-NLNISFNFI-EGESLLMAIK--DIAVS  316 (397)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~-~~~~~~~~l~--~i~~~  316 (397)
                      .+..+.++..+++.++.+.|++ .|.+..+..+..             ..++ +++|.+++. ...++.+.++  ++.+.
T Consensus       297 ~l~~r~~~~~~na~~la~~L~~-~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s  375 (430)
T 3ri6_A          297 TMALRIERSCQNAQELAHWLLS-IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIRRATN  375 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSSEECSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhC-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcceecCC
Confidence            3455667778889999999988 787764433321             1134 888888732 2456677776  56667


Q ss_pred             ccCccCCCC----CChh----hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         317 SGSACTSAS----LEPS----YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       317 ~g~~~~~~~----~~~~----~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .|..++...    +.+.    ......|+.    ++.||+|++.    |+++.+++.|++++
T Consensus       376 ~G~~~sli~~p~~~~h~~~~~~~~~~~g~~----~~liRlsvG~----E~~~dl~~dl~~al  429 (430)
T 3ri6_A          376 IHDNKSLILSPYHVIYALNSHEERLKLEIS----PAMMRLSVGI----EEIEDLKEDILQAL  429 (430)
T ss_dssp             CSCSSCEEECTGGGC---------CGGGSC----TTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             CCCCCceeeCCcccccccCCHHHHHhcCCC----CCeEEEEecc----CCHHHHHHHHHHhh
Confidence            776665321    1111    111233444    4899999996    56666666666654

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.96  E-value=2.2e-26  Score=217.84  Aligned_cols=311  Identities=15%  Similarity=0.116  Sum_probs=209.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEE
Q psy8850          35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV  113 (397)
Q Consensus        35 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v  113 (397)
                      +++...+...++++.+++++|.+  ..+++++|++|+.+++.++.    ++||+|+++.++|+++...+.. +...|.++
T Consensus        52 y~~~~~~~~~~l~~~la~~~g~~--~~v~~~sGt~A~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~  125 (421)
T 2ctz_A           52 YSRIMNPTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEV  125 (421)
T ss_dssp             CBTTBCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTTCEE
T ss_pred             ccCCCChHHHHHHHHHHHHhCCC--ceEEecCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCCEE
Confidence            33334467889999999999987  44566677999999999876    7899999999999999887743 23349999


Q ss_pred             EEe-ccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEeccc-ccCccccccCcccccE
Q psy8850         114 TYL-KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ-AVGKIDINIQNYKVDL  191 (397)
Q Consensus       114 ~~v-~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~-~~~~~~~~~~~~~~d~  191 (397)
                      +.+ +.+     |++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++| +.+... .....++|+
T Consensus       126 ~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~-~~~~~~~Di  199 (421)
T 2ctz_A          126 RFTSREE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL-RPLAWGAAL  199 (421)
T ss_dssp             EECCTTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC-CGGGGTCSE
T ss_pred             EEECCCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC-CccccCCeE
Confidence            999 765     899999999999999999999999999999999999999999999999999 766421 222457999


Q ss_pred             EEeccccccC-CC-CceEEEEec-C--C----CCccccccccCCccc--------------cc----cCC-CCchhHHHH
Q psy8850         192 MSFSAHKIYG-PK-GIGALYIRR-N--P----RTRIEAQIHGGGHEY--------------GL----RSG-TLATHQIVG  243 (397)
Q Consensus       192 ~~~s~~K~~g-~~-g~g~~~~~~-~--~----~~~~~~~~~~~~~~~--------------~~----~~~-~~~~~~~~~  243 (397)
                      +++|+||+++ +. ++|++++.+ +  +    ...+.+...++....              ++    ..| ..+....+.
T Consensus       200 ~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~  279 (421)
T 2ctz_A          200 VTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWV  279 (421)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHH
T ss_pred             EEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            9999999544 43 257677652 1  2    223333222211000              00    011 122222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCC--ChHHH
Q psy8850         244 MGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI--EGESL  306 (397)
Q Consensus       244 l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~  306 (397)
                      ....++    .+..+.++..++++++.+.|.+ .+++..+..+.               ...+.++.|.+++.  +...+
T Consensus       280 ~~~~l~----~l~~r~~~~~~~a~~l~~~L~~-~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~  354 (421)
T 2ctz_A          280 VLLGME----TLSLRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRF  354 (421)
T ss_dssp             HHHHHT----THHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHH
T ss_pred             HHcCcc----hHHHHHHHHHHhHHHHHHHHHh-CCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHH
Confidence            222333    2344566667899999999999 88888763222               23466788888652  23445


Q ss_pred             HHHhC--CcEecccCccCCC--------CCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSA--------SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~--------~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ...++  ++.++.|..++..        ...+....+.+|+.+    +.||+|++.    +++|.+++.|++++
T Consensus       355 ~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~----~~vRlS~g~----e~~~~li~~l~~al  420 (421)
T 2ctz_A          355 ISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSP----EMVRLSVGL----EHVEDLKAELKEAL  420 (421)
T ss_dssp             HHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCT----TEEEEECCS----SCHHHHHHHHHHHT
T ss_pred             HHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCC----CeEEEEeCC----CCHHHHHHHHHHHh
Confidence            55554  4455555433221        011123466777664    899999986    47777777777654

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.96  E-value=3e-28  Score=229.55  Aligned_cols=319  Identities=13%  Similarity=0.054  Sum_probs=208.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC------CCcEEE--eCChhHHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD------PREIIW--TSGATESNNL   73 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~i~~--~~g~t~a~~~   73 (397)
                      |+.++.+..+.+.+++.+.... ..+.   .|..    .....++++.++++++..      +++|++  |+|+++|+.+
T Consensus        40 d~~~~~~~~~~v~~a~~~~~~~-~~~~---~Y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~  111 (401)
T 7aat_A           40 DDNGKPYVLNCVRKAEAMIAAK-KMDK---EYLP----IAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRV  111 (401)
T ss_dssp             CTTSCCCCCHHHHHHHHHHHHT-TCCC---CCCC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHH
T ss_pred             CCCCCEechHHHHHHHHHhccc-cccc---CCCC----CCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHH
Confidence            5666666677899988887653 1111   1211    123567788888887642      678877  9999999999


Q ss_pred             HHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhc---CCceEEEEecccCc
Q psy8850          74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVNNE  148 (397)
Q Consensus        74 ~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~  148 (397)
                      ++.++.. +.++||+|++++|+|+++...+...   |.+++.+|.+  .++.+|++++++.+.   ++++++++++++||
T Consensus       112 ~~~~l~~-~~~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NP  187 (401)
T 7aat_A          112 GANFLQR-FFKFSRDVYLPKPSWGNHTPIFRDA---GLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNP  187 (401)
T ss_dssp             HHHHHHH-HCTTCCEEEEEESCCTTHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTT
T ss_pred             HHHHHHH-hccCCCEEEEcCCCchhHHHHHHHc---CCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCC
Confidence            8876542 2268999999999999998888777   9999999985  367899997777665   57899999999999


Q ss_pred             cccccc---HHHHHHHHHhcCcEEEEecccccCccc-c-----cc----CcccccEEEeccccccCCCC--ceEEEEecC
Q psy8850         149 IGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-I-----NI----QNYKVDLMSFSAHKIYGPKG--IGALYIRRN  213 (397)
Q Consensus       149 tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~-~-----~~----~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~  213 (397)
                      ||.+++   +++|+++|++||+++|+|++|...... .     .+    ......+++.|+||.+|+.|  +|++++...
T Consensus       188 tG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~  267 (401)
T 7aat_A          188 TGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICR  267 (401)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECS
T ss_pred             CCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeC
Confidence            998887   678899999999999999998733211 1     01    12246788999999877666  788887321


Q ss_pred             CCC---ccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhcC---cEE
Q psy8850         214 PRT---RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESIE---EIY  281 (397)
Q Consensus       214 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~  281 (397)
                      ...   .+.......   .......++.........+++.      +.+.+++..++++++++++.+.|++ +.   ++.
T Consensus       268 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~  343 (401)
T 7aat_A          268 DAEEAKRVESQLKIL---IRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKK-EGSSHNWQ  343 (401)
T ss_dssp             SHHHHHHHHHHHHHH---HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCSCCH
T ss_pred             CHHHHHHHHHHHHHH---HHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCc
Confidence            111   111111000   0000112222222222223321      1345777888999999999999988 42   233


Q ss_pred             EeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHH
Q psy8850         282 INGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI  359 (397)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i  359 (397)
                      +..+..   +.+++   .+.+...+...+.  ||.+.+                           .+||+++.. ++++|
T Consensus       344 ~~~~~~---~~~~~---~~~~~~~~~~ll~~~gi~v~~---------------------------~~Ris~~~~-~~~~i  389 (401)
T 7aat_A          344 HITDQI---GMFCF---TGLKPEQVERLTKEFSIYMTK---------------------------DGRISVAGV-ASSNV  389 (401)
T ss_dssp             HHHHCC---SSEEE---CCCCHHHHHHHHHHHCEECCT---------------------------TCEEEGGGC-CTTTH
T ss_pred             eecCCc---ceEEe---cCCCHHHHHHHHHhCCEeccC---------------------------CCeEEeccC-ChhhH
Confidence            332222   22222   2344444433333  777753                           359999864 45559


Q ss_pred             HHHHHHHHHHH
Q psy8850         360 DFTIKLLKMKV  370 (397)
Q Consensus       360 ~~~~~~l~~~~  370 (397)
                      ++++++|++++
T Consensus       390 ~~~~~~l~~~~  400 (401)
T 7aat_A          390 GYLAHAIHQVT  400 (401)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.96  E-value=3.7e-28  Score=226.41  Aligned_cols=336  Identities=16%  Similarity=0.138  Sum_probs=219.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHH-HHHhCCCCCcEEEeCChhHHHHHHHHHh-HhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEV-AQLIYADPREIIWTSGATESNNLAIKGA-AHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~i~~~~g~t~a~~~~l~~l-~~~~~~~   85 (397)
                      ++++++++++.+.+.+-+      ....+    +...++++.+ ++++|. .+++++++|||+|+.+++.++ .    ++
T Consensus        13 ~~~~~i~~a~~~~~~~~~------~~~~~----~~~~~l~~~~~a~~~g~-~~~~v~~~sgt~al~~al~~l~~----~~   77 (377)
T 3ju7_A           13 VPVIEYLDELKEIDASHI------YTNYG----PINQRFEQTIMSGFFQN-RGAVTTVANATLGLMAAIQLKKR----KK   77 (377)
T ss_dssp             CCGGGGHHHHHHHHHHTC------CSSSC----HHHHHHHHHHHHHTSTT-CSEEEEESCHHHHHHHHHHHHSC----TT
T ss_pred             CCcHHHHHHHHHHHHcCC------cccCC----HHHHHHHHHHHHHHhCC-CCeEEEeCCHHHHHHHHHHHcCC----CC
Confidence            457889999999887621      11111    3468899999 999993 347999999999999999987 5    79


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHh-cCC--ceEEEEecccCcccccccHHHHHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKI-CSD--TILVSVMLVNNEIGVIQPILEIGEL  161 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i-~~~--~~~v~~~~~~~~tG~~~~l~~i~~l  161 (397)
                      ||+|+++.++|+++...+...   |.+++.++++ +++.+|++++++++ +++  |++|+   ++|++|...|+++|.++
T Consensus        78 Gd~Vi~~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~l  151 (377)
T 3ju7_A           78 GKYALMPSFTFPATPLAAIWC---GLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEEL  151 (377)
T ss_dssp             CCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHH
T ss_pred             cCEEEECCCCcHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHH
Confidence            999999999999998887766   9999999998 57889999999998 666  88887   45679999999999999


Q ss_pred             HHhcCcEEEEecccccCccccccCcc---cccEEEec--cccccCCCCceEEEEecC-CCCccccccccCC------ccc
Q psy8850         162 CRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFS--AHKIYGPKGIGALYIRRN-PRTRIEAQIHGGG------HEY  229 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~~~~~~~~---~~d~~~~s--~~K~~g~~g~g~~~~~~~-~~~~~~~~~~~~~------~~~  229 (397)
                      |+ ||++||+|++|+.|... +....   ..|+.++|  .+|.+++...|+++.+++ +...+......+.      ...
T Consensus       152 a~-~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~  229 (377)
T 3ju7_A          152 EK-KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMM  229 (377)
T ss_dssp             HH-TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSS
T ss_pred             Hh-cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeec
Confidence            99 99999999999987642 22112   13555555  579555434577776543 2233333322211      111


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEE--EeCCCCC-CCCceEEEEecC-CChHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY--INGDMNN-RIPHNLNISFNF-IEGES  305 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~-~~~~~~~~~~~~-~~~~~  305 (397)
                      ++..+..+....+++ ..+    +.++.+.++.+++++++.+.|++ ++++.  +...... ....++.+.+++ .+..+
T Consensus       230 g~~~~~~~~~aa~~~-~~l----~~l~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T 3ju7_A          230 GFNCKMSEYAAAIGI-ATM----KKWDDKLKERTRISEWYKQLLQS-NGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQ  303 (377)
T ss_dssp             CCBCCCCHHHHHHHH-HHH----HTHHHHHHHHHHHHHHHHHHHHH-TTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHH
T ss_pred             cccCCCCHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHhcC-CCCccccccCCCCCcceEEEEEEEeCChhhHHH
Confidence            222333333333322 222    34566778888888899999988 65431  1111111 112233555553 23778


Q ss_pred             HHHHhC--CcEecccCc--cCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSA--CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~--~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.+.|.  ||.++.+..  +.......++....++.......+.||++++..++++|++++++.|++++..
T Consensus       304 l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          304 VIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             HHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            888886  887766541  1110000000000111122334689999999999999999999999988765

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.96  E-value=2.3e-27  Score=223.26  Aligned_cols=310  Identities=17%  Similarity=0.186  Sum_probs=215.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--c
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--K   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--~   84 (397)
                      +++++++++++.+++... .+..+ .+     ..+...++++.+++++|.  +++++++||++|+.+++.++.....  +
T Consensus        55 g~~~~~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~g~--~~v~~~~gg~~a~~~al~~~~~~~~~~~  125 (397)
T 2ord_A           55 GHSHPRLVEAIKDQAEKL-IHCSN-LF-----WNRPQMELAELLSKNTFG--GKVFFANTGTEANEAAIKIARKYGKKKS  125 (397)
T ss_dssp             CBTCHHHHHHHHHHHHHC-SCCCT-TS-----EEHHHHHHHHHHHHTTTS--CEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc-ccCcc-cc-----CCHHHHHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence            346899999999998763 22221 11     234678899999999984  5899999999999999997752110  0


Q ss_pred             C-CCEEEEcCCCChhhHH-HHHHHhhCCcE------------EEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccc
Q psy8850          85 R-GKHIITVQTEHKSVLD-SIRKLENDGFR------------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG  150 (397)
Q Consensus        85 ~-g~~vl~~~~~~~s~~~-~~~~~~~~g~~------------v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG  150 (397)
                      + +++|++.++.|++... ++...   |.+            +..+|.+     |+++|++++++++++|++++++||||
T Consensus       126 ~~~~~vi~~~~~yh~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~nptG  197 (397)
T 2ord_A          126 EKKYRILSAHNSFHGRTLGSLTAT---GQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSEDVCAVFLEPIQGESG  197 (397)
T ss_dssp             TTCCEEEEEBTCCCCSSHHHHHHS---BCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTTEEEEEECSEECTTT
T ss_pred             CCCceEEEEcCCcCCCchhhhhcc---CChhhccccCCCCCCeeEecCC-----CHHHHHHHhhcCeEEEEEecccCCCC
Confidence            3 4678888777755443 55444   433            6667653     89999999999999999999999999


Q ss_pred             c-cc---cHHHHHHHHHhcCcEEEEecccc-cCcc--ccccCcc--cccEEEecccc-ccCCCCceEEEEecCCCCcccc
Q psy8850         151 V-IQ---PILEIGELCRSKGVIFHCDAAQA-VGKI--DINIQNY--KVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA  220 (397)
Q Consensus       151 ~-~~---~l~~i~~l~~~~gi~livD~a~~-~~~~--~~~~~~~--~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~  220 (397)
                      . ++   ++++|+++|++||+++|+|++|+ ++..  +..+..+  .+|++  |++| +.++.++|+++++++.. .+..
T Consensus       198 ~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~  274 (397)
T 2ord_A          198 IVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-VLEP  274 (397)
T ss_dssp             CEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-CCCT
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-ccCC
Confidence            8 44   47899999999999999999997 2211  1111112  36776  5569 44444589999988765 4432


Q ss_pred             ccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEE
Q psy8850         221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNIS  297 (397)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~  297 (397)
                      ...+       ...+.+...+++..++++.+.+  +++.++++++++++.+.|++.   ++.+....+ .   +.++.+.
T Consensus       275 ~~~~-------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~---g~~~~~~  341 (397)
T 2ord_A          275 GDHG-------TTFGGNPLACRAGVTVIKELTK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG-M---GLMIGIQ  341 (397)
T ss_dssp             TSSC-------CSSTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-E---TTEEEEE
T ss_pred             CCcC-------CCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE-E---eEEEEEE
Confidence            1111       1123455566666677776543  457788888888888888772   232221211 1   4566777


Q ss_pred             ecC-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         298 FNF-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       298 ~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ++. .+..++.+.|.  ||.+.++.                       ++++||+++...+++++++++++|++++++
T Consensus       342 ~~~~~~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          342 FREEVSNREVATKCFENKLLVVPAG-----------------------NNTIRFLPPLTVEYGEIDLAVETLKKVLQG  396 (397)
T ss_dssp             ECTTSCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ECChHHHHHHHHHHHHCCCEEccCC-----------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence            764 34677777775  88887651                       278999998888999999999999988753

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.96  E-value=1.6e-28  Score=232.31  Aligned_cols=321  Identities=14%  Similarity=0.075  Sum_probs=218.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC-----CCCcEEE--eCChhHHHHHH
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA-----DPREIIW--TSGATESNNLA   74 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~-----~~~~i~~--~~g~t~a~~~~   74 (397)
                      ..+..++++.+.+++.+.+.. ...    .+.+  .......++++.+++++ +.     ++++|++  |+|+++|++++
T Consensus        43 ~~~~~~~~~~v~~a~~~~~~~-~~~----~~~y--~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~  115 (412)
T 1ajs_A           43 DDCQPWVLPVVRKVEQRIANN-SSL----NHEY--LPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIG  115 (412)
T ss_dssp             TTSCCCCCHHHHHHHHHHHTC-TTC----CCCC--CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHhhhC-hhh----ccCC--CCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHH
Confidence            333456779999999887732 101    1111  11224578899999988 53     6678999  99999999999


Q ss_pred             HHHhHhhhccCC-----CEEEEcCCCChhhHHHHHHHhhCCcE-EEEeccC--CCCCCCHHHHHHHhcC---CceEEEEe
Q psy8850          75 IKGAAHFYKKRG-----KHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPK--NNGLITLSQLEEKICS---DTILVSVM  143 (397)
Q Consensus        75 l~~l~~~~~~~g-----~~vl~~~~~~~s~~~~~~~~~~~g~~-v~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~  143 (397)
                      +..+...  ++|     |+|+++.++|+++...+...   |.+ ++.++.+  +++.+|++++++++++   ++++++++
T Consensus       116 ~~~~~~~--~~g~~~~~d~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~  190 (412)
T 1ajs_A          116 AEFLARW--YNGTNNKDTPVYVSSPTWENHNGVFTTA---GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHA  190 (412)
T ss_dssp             HHHHHHH--SSSSSCCCSCEEEEESCCTHHHHHHHHT---TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEES
T ss_pred             HHHHHHh--CcCcCCCCCeEEEcCCCcHHHHHHHHHc---CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEEC
Confidence            6533211  578     99999999999998877766   888 9999884  5567899999999875   67888899


Q ss_pred             cccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc--------ccc-cC-cccccEEEeccccccCCCC--ceEE
Q psy8850         144 LVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--------DIN-IQ-NYKVDLMSFSAHKIYGPKG--IGAL  208 (397)
Q Consensus       144 ~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~--------~~~-~~-~~~~d~~~~s~~K~~g~~g--~g~~  208 (397)
                      +++||||.++|   +++|+++|++||+++|+|++|.....        ++. +. ..+.++++.|+||.+|+.|  +|++
T Consensus       191 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~  270 (412)
T 1ajs_A          191 CAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNL  270 (412)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEE
Confidence            99999999987   46799999999999999999763211        111 11 1134588999999777666  7999


Q ss_pred             EE---ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q psy8850         209 YI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE-  278 (397)
Q Consensus       209 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~-  278 (397)
                      ++   +++..+.+...+..   ......++++.....++.++++..      .+++++..++++++++++.+.|++ ++ 
T Consensus       271 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~  346 (412)
T 1ajs_A          271 TVVAKEPDSILRVLSQMQK---IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA-LKT  346 (412)
T ss_dssp             EEECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred             EEecCCHHHHHHHHHHHHH---HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCC
Confidence            98   54322222111100   011112334555566666777643      346788899999999999999998 54 


Q ss_pred             --cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850         279 --EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT  354 (397)
Q Consensus       279 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~  354 (397)
                        ++.+..+..   +.++++   +.+...+...+.  ||.+.+                           .+||+++. .
T Consensus       347 ~~~~~~~~~~~---~~~~~~---~~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~-~  392 (412)
T 1ajs_A          347 PGTWNHITDQI---GMFSFT---GLNPKQVEYLINQKHIYLLP---------------------------SGRINMCG-L  392 (412)
T ss_dssp             SSCCHHHHHCC---SSEEEC---CCCHHHHHHHHHTTCEECCT---------------------------TSEEEGGG-C
T ss_pred             CCCeeEEcCCC---ceEEEe---CCCHHHHHHHHHhCCEEecC---------------------------CcEEEeee-C
Confidence              344433322   222222   233444444442  777753                           25999984 4


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q psy8850         355 TEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       355 ~~~~i~~~~~~l~~~~~~~  373 (397)
                      +++++++++++|+++++++
T Consensus       393 ~~~~i~~~~~~l~~~l~~~  411 (412)
T 1ajs_A          393 TTKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             CTTTHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            8999999999999988653

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.96  E-value=9.8e-29  Score=233.76  Aligned_cols=316  Identities=12%  Similarity=0.054  Sum_probs=216.8

Q ss_pred             CCCCCCCCCHHHHHHHHH-HHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-C-----CCCCcEEE--eCChhHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIP-YLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-Y-----ADPREIIW--TSGATESNN   72 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-----~~~~~i~~--~~g~t~a~~   72 (397)
                      |+++.+++++.+.+++.+ .+...  .. . .|.    ......++++.+++++ +     +++++|++  |+|+++|++
T Consensus        41 d~~~~~~~~~~v~~a~~~~~~~~~--~~-~-~y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~  112 (412)
T 1yaa_A           41 DDNGKPWVLPSVKAAEKLIHNDSS--YN-H-EYL----GITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALH  112 (412)
T ss_dssp             CTTSCBCCCHHHHHHHHHHHTCTT--CC-C-CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHhhhcCcc--cc-c-CCC----CCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHH
Confidence            556666788999999998 76521  00 0 121    1224577888888887 3     25678999  999999999


Q ss_pred             HHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-C-CCCCCCHHHHHHHhcCC---ceEEEEecccC
Q psy8850          73 LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-K-NNGLITLSQLEEKICSD---TILVSVMLVNN  147 (397)
Q Consensus        73 ~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~-~~~~~d~~~l~~~i~~~---~~~v~~~~~~~  147 (397)
                      +++..+...  .+||+|+++.++|+++...+...   |.+++.+|. + .++.+|+++++++++++   +.++++++++|
T Consensus       113 ~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~n  187 (412)
T 1yaa_A          113 ISAKFFSKF--FPDKLVYLSKPTWANHMAIFENQ---GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHN  187 (412)
T ss_dssp             HHHHHHHHH--CTTCCEEEEESCCTTHHHHHHTT---TCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCT
T ss_pred             HHHHHHHHh--CCCCEEEEeCCCCccHHHHHHHc---CceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence            985432211  58899999999999998776665   999999998 4 36779999999998753   45666699999


Q ss_pred             ccccccc---HHHHHHHHHhcCcEEEEecccccCcc--------cc-ccCccc----ccEEEeccccccCCCC--ceEEE
Q psy8850         148 EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--------DI-NIQNYK----VDLMSFSAHKIYGPKG--IGALY  209 (397)
Q Consensus       148 ~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~--------~~-~~~~~~----~d~~~~s~~K~~g~~g--~g~~~  209 (397)
                      |||.++|   +++|+++|++||+++|+|++|+....        ++ ++...+    .++++.|++|.+|+.|  +|+++
T Consensus       188 PtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~  267 (412)
T 1yaa_A          188 PTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFH  267 (412)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEE
Confidence            9999987   45789999999999999999963211        12 222112    4688999999777766  68887


Q ss_pred             --E-----ecC----CCCccccccccCCccccccCCCCchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q psy8850         210 --I-----RRN----PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNG  272 (397)
Q Consensus       210 --~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~------~~~~~~~~~~~~~~~~~l~~~  272 (397)
                        +     +++    ....+....       ....++++.....++.++++..      .+++++..++++++++++.+.
T Consensus       268 ~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  340 (412)
T 1yaa_A          268 LALTKQAQNKTIKPAVTSQLAKII-------RSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDH  340 (412)
T ss_dssp             EECCSCTTHHHHHHHHHHHHHHHH-------HTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHH-------hhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              5     332    222222211       1112344555556666677643      346788899999999999999


Q ss_pred             HhhhcC---cEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         273 LMESIE---EIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       273 l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      |++ ++   ++.+..+..   +.++++   +.+...+...+.  ||.+.+                           ++|
T Consensus       341 L~~-~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~l~~~gi~v~~---------------------------~~R  386 (412)
T 1yaa_A          341 LVK-LGTPGNWDHIVNQC---GMFSFT---GLTPQMVKRLEETHAVYLVA---------------------------SGR  386 (412)
T ss_dssp             HHH-HTCSSCCTHHHHCC---SSEEEC---CCCHHHHHHHHHHHCEECCT---------------------------TSE
T ss_pred             HHh-hCCCCCeeeeccCc---eEEEee---CCCHHHHHHHHHhCCEEecc---------------------------CcE
Confidence            988 54   354443322   222222   344555544442  776652                           469


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      |+++. .+++++++++++|+++++.
T Consensus       387 is~~~-~~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          387 ASIAG-LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             EEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred             EEEcc-CCHhHHHHHHHHHHHHHHh
Confidence            99985 5899999999999998764

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.96  E-value=7.3e-28  Score=231.53  Aligned_cols=343  Identities=18%  Similarity=0.186  Sum_probs=218.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      |+.+..+. +.+.+++.+.+...    .. .|.    ......+++++++++++.+  ++++|+|||+|+.+++.++...
T Consensus        47 D~~~~~~~-~~v~~a~~~~~~~~----~~-~y~----~~~~~~~l~~~la~~~~~~--~v~~t~ggt~A~~~al~~~~~~  114 (467)
T 1ax4_A           47 DLLTDSGT-NAMSDHQWAAMITG----DE-AYA----GSRNYYDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKY  114 (467)
T ss_dssp             ECSCSSSC-CCEEHHHHHHHHTC----CC-CSS----SCHHHHHHHHHHHHHHCCC--EEEEESSHHHHHHHHHHHHHHH
T ss_pred             ecccCcCC-HHHHHHHHHHHhhc----cc-ccc----cCccHHHHHHHHHHHcCCC--cEEEcCCcHHHHHHHHHHHHHh
Confidence            45444444 67777777766431    01 121    1235678899999999874  8999999999999999988721


Q ss_pred             hccCCCE---EEEcCCCChhhHHHHHHHhhCCcEEEEeccC----------CCCCCCHHHHHHHhcC----CceEEEEec
Q psy8850          82 YKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLKPK----------NNGLITLSQLEEKICS----DTILVSVML  144 (397)
Q Consensus        82 ~~~~g~~---vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~----------~~~~~d~~~l~~~i~~----~~~~v~~~~  144 (397)
                      ...+||+   |+++.+.|.++...+...   |.+++.++.+          .++.+|+++|++++++    ++++|++++
T Consensus       115 ~~~~Gd~~~~viv~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~  191 (467)
T 1ax4_A          115 KQKEGKAKNPVFISNFHFDTTAAHVELN---GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTV  191 (467)
T ss_dssp             HHHTTCCSSCEEEESSCCHHHHHHHHHT---TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred             hccCCCccceEEEeccccchhhHHHhcc---CCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEec
Confidence            1118888   888855556666666655   8888776542          1456899999999974    689999999


Q ss_pred             ccCcc-ccccc---HHHHHHHHHhcCcEEEEeccccc-----------CccccccCc------ccccEEEeccccccCCC
Q psy8850         145 VNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAV-----------GKIDINIQN------YKVDLMSFSAHKIYGPK  203 (397)
Q Consensus       145 ~~~~t-G~~~~---l~~i~~l~~~~gi~livD~a~~~-----------~~~~~~~~~------~~~d~~~~s~~K~~g~~  203 (397)
                      ++||+ |.++|   +++|+++|++||++||+|+++.+           +....++..      ..+|++++|+||.+|++
T Consensus       192 ~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~  271 (467)
T 1ax4_A          192 TCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN  271 (467)
T ss_dssp             SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS
T ss_pred             cccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC
Confidence            99999 78776   57899999999999999998664           221222111      13688999999966654


Q ss_pred             -CceEEEEe-c-CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcE
Q psy8850         204 -GIGALYIR-R-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI  280 (397)
Q Consensus       204 -g~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  280 (397)
                       | |+++.+ + +....+.......  ......++.+...+.++..+++...+  .+..++..++++++.+.|.+  .++
T Consensus       272 ~G-g~~~~~d~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~--~~~  344 (467)
T 1ax4_A          272 IG-GLVAIRDNEEIFTLARQRCVPM--EGFVTYGGLAGRDMAAMVQGLEEGTE--EEYLHYRIGQVKYLGDRLRE--AGI  344 (467)
T ss_dssp             SC-EEEEESSCHHHHHHHHHHHHHH--TCSTTTTTCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHH--TTC
T ss_pred             cc-eEEEeCCHHHHHHHHHhhcccc--ccccccCCccchHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHh--CCC
Confidence             4 666666 3 3433332221100  01112234444444444445543322  12333444667888888887  466


Q ss_pred             EEeCCCCCCCCceEEEE-------ec--CCChHHHHHHh-C--CcEecc-cCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         281 YINGDMNNRIPHNLNIS-------FN--FIEGESLLMAI-K--DIAVSS-GSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       281 ~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~l-~--~i~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      .+..+..   +..+++.       ++  +.+..++...| .  ||.+.+ |..+....  +     ..|.......+++|
T Consensus       345 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~--~-----~~g~~~~~~~~~iR  414 (467)
T 1ax4_A          345 PIQYPTG---GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD--P-----ATGEQKHADMEFMR  414 (467)
T ss_dssp             CBCSSCC---SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC--T-----TTCSBCCCSCCEEE
T ss_pred             CcccCCC---ceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccc--c-----ccccccccccceEE
Confidence            5554332   3455555       32  12356777777 4  899888 54321100  0     00111111237899


Q ss_pred             EeeCC-CCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         348 FTIGR-FTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       348 i~~~~-~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      |+++. .++++++++++++|+++++++++.
T Consensus       415 ls~~~~~~t~e~i~~~~~~l~~~~~~~~~~  444 (467)
T 1ax4_A          415 LTIARRVYTNDHMDYIADALIGLKEKFATL  444 (467)
T ss_dssp             EECCTTSSCHHHHHHHHHHHHTTHHHHTTC
T ss_pred             EecccccCCHHHHHHHHHHHHHHHHhhhcC
Confidence            99984 489999999999999999886553

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.96  E-value=5e-27  Score=222.83  Aligned_cols=337  Identities=18%  Similarity=0.178  Sum_probs=217.4

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhH-HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTA-EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++..++++.+++++.+.+...+  +++.. .+..+... .......++.++++++.+. ..++++||++|+..++.++. 
T Consensus        39 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~v~~~~Gs~a~~~al~~~~-  115 (425)
T 3ecd_A           39 ASENIVSRAVLDAQGSVLTNKYAEGYPGK-RYYGGCEFADEVEALAIERVKRLFNAGH-ANVQPHSGAQANGAVMLALA-  115 (425)
T ss_dssp             TTCCCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHC-
T ss_pred             cccCCCCHHHHHHHhhhhhcccccCCCcc-hhcCCChHHHHHHHHHHHHHHHHhCCCC-ceeecCchHHHHHHHHHHcc-
Confidence            4555679999999998885433  23332 22222111 1234445688999999874 23458999999999999886 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHH--HhhCCcEEEEeccC-CCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~--~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~  156 (397)
                         ++||+|+++.++|++.......  ....+.+++.++.+ +++.+|+++|+++++ +++++|++++++|  |...+++
T Consensus       116 ---~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l~  190 (425)
T 3ecd_A          116 ---KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PRKLDFA  190 (425)
T ss_dssp             ---CTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CSCCCHH
T ss_pred             ---CCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CCcCCHH
Confidence               7999999999999883322222  11124466677766 457899999999997 5899999998777  5678899


Q ss_pred             HHHHHHHhcCcEEEEecccccCccc----cccCcccccEEEecccc-ccCCCCceEEEEecC-CCCccccccccCCcccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~  230 (397)
                      +|.++|++||++||+|++|+.+...    ..... .+|+++.|+|| +.|+. +|+++.+++ ....+......+     
T Consensus       191 ~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~~~~-----  263 (425)
T 3ecd_A          191 RFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAVFPG-----  263 (425)
T ss_dssp             HHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhhCcc-----
Confidence            9999999999999999998644331    11111 37899999999 55665 588888743 323333322111     


Q ss_pred             ccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLL  307 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  307 (397)
                       ..++++...+.++..++... .++++++.+++.++++++.+.|.+  .++.+..+..  ...++++.++  ..+...+.
T Consensus       264 -~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  338 (425)
T 3ecd_A          264 -LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA--GGVDLVTGGT--DNHLLLVDLRPKGLKGAQVE  338 (425)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECGGGTCCHHHHH
T ss_pred             -ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--CCCeeccCCC--CceEEEEEeCCCCCCHHHHH
Confidence             12345556666666666554 356788999999999999999998  5777665322  1456666665  33566676


Q ss_pred             HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC----CCCHHHHHHHHHHHHHHHHHH
Q psy8850         308 MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       308 ~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~----~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..|.  ||.+.++.....  .           ......+.+|++++.    ..+++++++++++|+++++..
T Consensus       339 ~~l~~~gi~v~~~~~p~~--~-----------~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          339 QALERAGITCNKNGIPFD--P-----------EKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL  397 (425)
T ss_dssp             HHHHHTTEECEECCCTTC--S-----------SCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCEecccccCCC--C-----------CCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence            6665  888885431110  0           011223689999443    345999999999999998776

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.96  E-value=2.4e-27  Score=226.39  Aligned_cols=335  Identities=13%  Similarity=0.157  Sum_probs=226.8

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHH-HHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKAR-NEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++..+.+++|++++.+.+...+  ++|.+ .+..+.......+++. +.+++++|++. ..++++||++|+..++.++. 
T Consensus        52 ~~~~~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~~e~~a~~~la~~~g~~~-~~v~~~sGs~a~~~a~~~~~-  128 (447)
T 3h7f_A           52 ASENFVPRAVLQAQGSVLTNKYAEGLPGR-RYYGGCEHVDVVENLARDRAKALFGAEF-ANVQPHSGAQANAAVLHALM-  128 (447)
T ss_dssp             TTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHHHHhcCCccccCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCc-eEEEeCCHHHHHHHHHHHhc-
Confidence            4556779999999998886433  33433 2333333334445555 99999999874 23337889999999999887 


Q ss_pred             hhccCCCEEEEcCCCChhhHH-H--HHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhc-CCceEEEEecccCcccccccH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLD-S--IRKLENDGFRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~-~--~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l  155 (397)
                         ++||+|+++.++|+++.. .  ....+ .+..+..++.+ +++.+|++++++++. .++++|+++.++||++.  ++
T Consensus       129 ---~~Gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l  202 (447)
T 3h7f_A          129 ---SPGERLLGLDLANGGHLTHGMRLNFSG-KLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DF  202 (447)
T ss_dssp             ---CTTCEEEEECGGGTCCGGGTCTTSHHH-HSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CH
T ss_pred             ---CCCCEEEecCcccccccchhhhhhhcC-CeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CH
Confidence               899999999999877321 1  11111 15677777776 567899999999995 47899999888888876  99


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCcccc
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      ++|.++|++||+++|+|++|+.|..    ..+.. .++|+++.|+|| +.|+.| |+++.+++....+......      
T Consensus       203 ~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~~------  274 (447)
T 3h7f_A          203 AAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVFP------  274 (447)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHHTT------
T ss_pred             HHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhcCC------
Confidence            9999999999999999999864421    11211 257999999999 666775 9999887655544433222      


Q ss_pred             ccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhc----CcEEEeCCCCCCCCceEEEEecC--CCh
Q psy8850         231 LRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESI----EEIYINGDMNNRIPHNLNISFNF--IEG  303 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~  303 (397)
                      +..++++...++++.+++.... ++++++.+++.++++++.+.|.+ .    +++.+.....  ..+++.+.+..  .+.
T Consensus       275 ~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~  351 (447)
T 3h7f_A          275 GQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA-PDVAKAGVSVVSGGT--DVHLVLVDLRDSPLDG  351 (447)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS-HHHHHTTCEEGGGSC--SSSEEEEECTTSSCCH
T ss_pred             cccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh-ccccCCCeEEecCCC--CCCEEEEEcCCCCCCH
Confidence            2234556666777767776553 36788899999999999999987 4    3677664221  13455666643  345


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~  371 (397)
                      ..+...|.  ||.+.......             ....+...+.+||++...    ++++++++++++|.+++.
T Consensus       352 ~~~~~~l~~~GI~v~~~~i~~-------------~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~  412 (447)
T 3h7f_A          352 QAAEDLLHEVGITVNRNAVPN-------------DPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA  412 (447)
T ss_dssp             HHHHHHHHHTTEECBC--------------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCeEEecccCCC-------------CCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence            55555554  88776321000             000112237799987643    579999999999887753

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.95  E-value=5.1e-27  Score=233.34  Aligned_cols=302  Identities=16%  Similarity=0.081  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHH-HHHHhhCCcEEEEeccCC
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-IRKLENDGFRVTYLKPKN  120 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~-~~~~~~~g~~v~~v~~~~  120 (397)
                      .+.++++.+++++|++. .+++++|+++|+.+++.+++    ++||+|+++.++|.++..+ +...   |.+++.++.+.
T Consensus       174 ~i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~----~pGD~VLv~~~~H~S~~~~~~~l~---Ga~~v~v~~~~  245 (730)
T 1c4k_A          174 PAVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSALAMA---GGRPVYLQTNR  245 (730)
T ss_dssp             HHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHTTTT---CCEEEEECEEE
T ss_pred             HHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHHHC---CCEEEEEeCCc
Confidence            57889999999999974 47788888899999999987    8999999999999999876 4433   99999887643


Q ss_pred             C-----CCCCHHHH-----HHHhcCC------c----eEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCc-
Q psy8850         121 N-----GLITLSQL-----EEKICSD------T----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK-  179 (397)
Q Consensus       121 ~-----~~~d~~~l-----~~~i~~~------~----~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~-  179 (397)
                      +     +.+|+++|     +++++++      +    ++++++++ |++|.+.|+++|+++|++||++|++|++|+.+. 
T Consensus       246 ~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~  324 (730)
T 1c4k_A          246 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ  324 (730)
T ss_dssp             CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred             cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccc
Confidence            2     34788888     9998765      5    88999987 589999999999999999999999999997421 


Q ss_pred             -c-------ccccCccccc----EEEecccc-ccCCCCceEEEEecCCCCc----cccccccCCccccccCCCCchhHHH
Q psy8850         180 -I-------DINIQNYKVD----LMSFSAHK-IYGPKGIGALYIRRNPRTR----IEAQIHGGGHEYGLRSGTLATHQIV  242 (397)
Q Consensus       180 -~-------~~~~~~~~~d----~~~~s~~K-~~g~~g~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  242 (397)
                       .       +++...+++|    ++++|+|| +.|+.+.|+++++++.+..    +...... .....+..++++...++
T Consensus       325 f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~-~~~~~~~stsp~~~~ia  403 (730)
T 1c4k_A          325 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFN-NSFNLFMSTSPFYPMYA  403 (730)
T ss_dssp             SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHH-HHHHHHSCSSCCHHHHH
T ss_pred             cCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHH-HHHHHhCCCCCcHHHHH
Confidence             1       1222233667    99999999 6777777888888654211    1100000 00012345778888899


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC----------------------------C-----
Q psy8850         243 GMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMN----------------------------N-----  288 (397)
Q Consensus       243 ~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----------------------------~-----  288 (397)
                      ++.++++.+.. +..++.+++.++.+++++.|.+.++++.+..+..                            +     
T Consensus       404 al~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  483 (730)
T 1c4k_A          404 ALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEG  483 (730)
T ss_dssp             HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTT
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccc
Confidence            99889988765 4566778899999999999977457887765421                            0     


Q ss_pred             --C-----CCceEEEEecC------------CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         289 --R-----IPHNLNISFNF------------IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       289 --~-----~~~~~~~~~~~------------~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                        .     .+..+.+..++            .++..+.+.|.  ||.+...                       ....+|
T Consensus       484 ~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~-----------------------~~~~ir  540 (730)
T 1c4k_A          484 YGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS-----------------------DLNSIL  540 (730)
T ss_dssp             CCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-----------------------CSSEEE
T ss_pred             cCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-----------------------CCCeEE
Confidence              0     11124555532            45667776665  5554321                       237799


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ++++..+|++++++++++|.++.+.+.+.
T Consensus       541 ~~~s~g~t~e~i~~Ll~aL~~i~~~~~~~  569 (730)
T 1c4k_A          541 FLMTPAETPAKMNNLITQLLQLQRLIEED  569 (730)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999998877644

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.95  E-value=7.9e-27  Score=220.17  Aligned_cols=315  Identities=13%  Similarity=0.124  Sum_probs=218.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---c
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---K   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---~   84 (397)
                      ..+|.+.+++.+.+....... . .     ...+...+++++++++++.+  ++++++||++|+.++++++.....   +
T Consensus        55 ~~~p~v~~a~~~~~~~~~~~~-~-~-----~~~~~~~~l~~~la~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~~  125 (406)
T 4adb_A           55 HAHPELREALNEQASKFWHTG-N-G-----YTNEPVLRLAKKLIDATFAD--RVFFCNSGAEANEAALKLARKFAHDRYG  125 (406)
T ss_dssp             BTCHHHHHHHHHHHTTCSCCC-T-T-----SCCHHHHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHhccccc-C-C-----cCCHHHHHHHHHHHhhCCCC--eEEEeCcHHHHHHHHHHHHHHHHHhcCC
Confidence            358999999999987632211 1 1     12245788999999999865  899999999999999998752100   0


Q ss_pred             CC-CEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccc
Q psy8850          85 RG-KHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        85 ~g-~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~  153 (397)
                      ++ ++|++.++.|+++......+...          +..+..+|.+     |+++|++++++++++|+++ |+||+|.+.
T Consensus       126 ~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~-p~np~g~~~  199 (406)
T 4adb_A          126 SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALIDDSTCAVIVE-PIQGEGGVV  199 (406)
T ss_dssp             TTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCSTTEEEEEEC-SEETTTTSE
T ss_pred             CCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhcCCeEEEEEe-CCcCCCCCc
Confidence            44 88999999998886555554211          1244555543     8999999999999999999 889998765


Q ss_pred             -----cHHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccccccC-CCCceEEEEecCCCCcccccc
Q psy8850         154 -----PILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQI  222 (397)
Q Consensus       154 -----~l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~  222 (397)
                           ++++|.++|++||++||+|++|+ ++..    ..+.....+|+++  ++|.++ +.++|+++++++..+.+....
T Consensus       200 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~r~G~~~~~~~~~~~~~~~~  277 (406)
T 4adb_A          200 PASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLT--TAKALGGGFPVGALLATEECARVMTVGT  277 (406)
T ss_dssp             ECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHHTCCTTS
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEE--echhhcCCCCeEEEEEcHHHHhhhccCC
Confidence                 47899999999999999999996 2211    1122233567775  479444 334899999876655554432


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CcEEEeCCCCCCCCceEEEEec
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI---EEIYINGDMNNRIPHNLNISFN  299 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~  299 (397)
                      .+.       ..+.+.....+..++++.+..  +++.++++++++++.+.|++..   +.+....    ..+.++.+.++
T Consensus       278 ~~~-------~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~g~~~~~~~~  344 (406)
T 4adb_A          278 HGT-------TYGGNPLASAVAGKVLELINT--PEMLNGVKQRHDWFVERLNTINHRYGLFSEVR----GLGLLIGCVLN  344 (406)
T ss_dssp             SCC-------SSTTCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE----EETTEEEEEEC
T ss_pred             cCC-------CCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----EEEEEEEEEEe
Confidence            221       123445556666677776533  5677788888888888887621   2221111    11456677776


Q ss_pred             CC---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         300 FI---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       300 ~~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      ..   +..++.+.|.  |+.+.++.                       .+++|++++..++++++++++++|++++++++
T Consensus       345 ~~~~~~~~~~~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~  401 (406)
T 4adb_A          345 ADYAGQAKQISQEAAKAGVMVLIAG-----------------------GNVVRFAPALNVSEEEVTTGLDRFAAACEHFV  401 (406)
T ss_dssp             TTTTTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCcEEeecC-----------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            53   4677777775  88877642                       38899998888999999999999999998876


Q ss_pred             h
Q psy8850         375 E  375 (397)
Q Consensus       375 ~  375 (397)
                      +
T Consensus       402 ~  402 (406)
T 4adb_A          402 S  402 (406)
T ss_dssp             C
T ss_pred             h
Confidence            5

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.92  E-value=1.4e-30  Score=244.71  Aligned_cols=318  Identities=15%  Similarity=0.159  Sum_probs=224.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHH----hC--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL----IY--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++|+.+++++.+.+...       .+.+...    ..++++.++++    +|  .++++|++++|+++|+.+++.++.  
T Consensus        44 ~~~~~v~~a~~~~~~~~-------~~~y~~~----~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--  110 (392)
T 3b1d_A           44 EVMPEVKQAIHDYAEQL-------VYGYTYA----SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT--  110 (392)
Confidence            45788999988877531       1111111    44555555554    45  566789999999999999999887  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CC--CCCCHHHHHHHhc-CCceEEEEecccCccccccc---
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN--GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---  154 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~--~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~---  154 (397)
                        ++|++|++..+.|+++...+...   |.+++.+|.+ ++  +.+|+++++++++ +++++|++++++||||.++|   
T Consensus       111 --~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~  185 (392)
T 3b1d_A          111 --KEGEAVLINSPVYPPFARSVRLN---NRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREV  185 (392)
Confidence              78999999999999998877766   8888888885 32  3589999999997 67899999999999999987   


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCcc----ccccC---c--ccccEEEeccccccCCCC--ceEEEEecC-CCCcccccc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQ---N--YKVDLMSFSAHKIYGPKG--IGALYIRRN-PRTRIEAQI  222 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~---~--~~~d~~~~s~~K~~g~~g--~g~~~~~~~-~~~~~~~~~  222 (397)
                      +++|+++|++||+++|+|++|+....    ...+.   .  .+.++++.|++|.+|..|  +|+++++++ ....+....
T Consensus       186 l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~  265 (392)
T 3b1d_A          186 LEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQ  265 (392)
Confidence            78899999999999999999984321    11221   1  345688999999655333  799888754 555554432


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--  300 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--  300 (397)
                      ..      +..++++.....+..++++...+.+++..+++.++++++.+.|++.++++.+..+..   ..++++.++.  
T Consensus       266 ~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~i~~~~~~  336 (392)
T 3b1d_A          266 LV------NNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQG---TYLIWLDFSDYG  336 (392)
Confidence            21      111233444555555666643445778888899999999999876346766654433   2233455553  


Q ss_pred             CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      .+..++.+.|.   ||.+.+|..|.+                 ..++++||+++.  +++++++++++|.++++
T Consensus       337 ~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRi~~~~--~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          337 LTDDALFTLLHDQAKVILNRGSDYGS-----------------EGELHARLNIAA--PKSLVEEICKRIVCCLP  391 (392)
Confidence            34566776662   888888765432                 123789999885  68999999999988764

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.95  E-value=1.5e-27  Score=227.81  Aligned_cols=316  Identities=16%  Similarity=0.034  Sum_probs=213.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CCC-----CCcEEE--eCChhHHH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YAD-----PREIIW--TSGATESN   71 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~-----~~~i~~--~~g~t~a~   71 (397)
                      +|+++++++.+++.+++.+.... ...+.   .|.    ......++++.+++++ |.+     +++|++  |+|+++|+
T Consensus        60 ~d~~~~~~v~~av~~a~~~~~~~~~~~~~---~Y~----~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al  132 (448)
T 3meb_A           60 RDESGKPWILPAVKEAEAIISSDLSKYNK---EYP----PVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSL  132 (448)
T ss_dssp             CCTTSCCCCCHHHHHHHHHHHHCTTTTCC---SCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred             cCCCCCEechHHHHHHHHHHhhcccCCCC---CCC----CCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHH
Confidence            36667777778888887766521 11111   111    1223577888888887 876     678999  99999999


Q ss_pred             HHHH--HHhHhhhccCCCEEEEcCCCChhhHHHHH----HHhhCCcEEEEecc-CCC--CCCCHHHHHHHhcC---CceE
Q psy8850          72 NLAI--KGAAHFYKKRGKHIITVQTEHKSVLDSIR----KLENDGFRVTYLKP-KNN--GLITLSQLEEKICS---DTIL  139 (397)
Q Consensus        72 ~~~l--~~l~~~~~~~g~~vl~~~~~~~s~~~~~~----~~~~~g~~v~~v~~-~~~--~~~d~~~l~~~i~~---~~~~  139 (397)
                      ++++  .++.    .+||+|++++|+|+++...+.    ..   |.+++.+|. +++  +.+|++++++++++   ++++
T Consensus       133 ~l~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~~~~~---G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~  205 (448)
T 3meb_A          133 HIGFEFLHLW----MPKAEFYMPSTTWPNHYGIYDKVFNKL---KVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIF  205 (448)
T ss_dssp             HHHHHHHHHH----CTTCCEEEESSCCTHHHHHHHHHHCTT---TSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEE
T ss_pred             HHHHHHHHHh----CCCCEEEECCCCCHhHHHHHHhhHHhC---CCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEE
Confidence            8844  4444    689999999999999988877    44   999999998 553  78999999999974   5788


Q ss_pred             EEEecccCcccccccH---HHHHHHHHhcCcEEEEecccccCcc-cc-----ccC----cccccEEEeccccccCCCC--
Q psy8850         140 VSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI-DI-----NIQ----NYKVDLMSFSAHKIYGPKG--  204 (397)
Q Consensus       140 v~~~~~~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~-~~-----~~~----~~~~d~~~~s~~K~~g~~g--  204 (397)
                      +++++++||||.+++.   ++|+++|++||+++|+|++|..... ..     .+.    .....+++.|+||.+|+.|  
T Consensus       206 v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R  285 (448)
T 3meb_A          206 LFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGER  285 (448)
T ss_dssp             EEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGC
T ss_pred             EEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcccc
Confidence            8999999999999885   5599999999999999999873221 11     111    1134577999999777656  


Q ss_pred             ceEE--EE--------ec-----CCCCccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHH
Q psy8850         205 IGAL--YI--------RR-----NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRIL  263 (397)
Q Consensus       205 ~g~~--~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~  263 (397)
                      +|++  ++        .+     +....+....       +.....++.....+..++++.      +.+.+++..+++.
T Consensus       286 iG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~  358 (448)
T 3meb_A          286 IGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQI-------RKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIH  358 (448)
T ss_dssp             CEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHH-------HTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeeeeccccccccCCHHHHHHHHHHHHHHH-------hcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            6877  44        32     1211111111       111223444444444455432      1245778889999


Q ss_pred             HHHHHHHHHHhhhc--Cc------EEEeCCCCCCCCceEEEEecCCChHHHHHHh-C--CcEecccCccCCCCCChhhHH
Q psy8850         264 FLQKRLYNGLMESI--EE------IYINGDMNNRIPHNLNISFNFIEGESLLMAI-K--DIAVSSGSACTSASLEPSYVL  332 (397)
Q Consensus       264 ~~~~~l~~~l~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~  332 (397)
                      ++++++.+.|++ +  ++      +.+..+..   + +  +.+.+.+. ++...+ .  ||.+.+|.             
T Consensus       359 ~~r~~l~~~L~~-~~~~~~~~~~~~~~~~~~~---g-~--~~~~~~~~-~~~~~ll~~~gV~v~~G~-------------  417 (448)
T 3meb_A          359 RMRSLLHASLAK-RKTPGPGSKGTWDHILTAI---G-M--FTFTGLTP-EHVDYLKEKWSIYLVKAG-------------  417 (448)
T ss_dssp             HHHHHHHHHHHH-TTCCCSTTTCCCTHHHHCC---S-S--EEECCCCH-HHHHHHHHHHCEEECSGG-------------
T ss_pred             HHHHHHHHHHHh-hCCCCcCcccccceeCCCc---e-E--EEecCCCH-HHHHHHHHhCCEEEeCCC-------------
Confidence            999999999988 4  33      22222211   2 2  22233444 444444 3  88888762             


Q ss_pred             HhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         333 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       333 ~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                                   .||+++. .++++|++++++|++++++
T Consensus       418 -------------gRis~a~-~~~~~i~~~~~~l~~~l~~  443 (448)
T 3meb_A          418 -------------GRMSMCG-LTESNCDYVAEAIHDAVTK  443 (448)
T ss_dssp             -------------GEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred             -------------cEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence                         2999975 3567799999999999873

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.95  E-value=2.9e-26  Score=217.20  Aligned_cols=309  Identities=15%  Similarity=0.116  Sum_probs=211.2

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      |+.+++++.+++......... .+     ..+...++++.++++++.+ +++|++++|+++|++++++++.. +  +|++
T Consensus        61 ~p~v~~a~~~~~~~~~~~~~~-~~-----~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~-~--~~~~  131 (419)
T 2eo5_A           61 HPEVIKIGIEQMQKLAHAAAN-DF-----YNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN-T--GRKY  131 (419)
T ss_dssp             CHHHHHHHHHHHTTSCCCSCS-CS-----CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHT-T--SCCE
T ss_pred             CHHHHHHHHHHHhhCcccccc-cc-----CCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHH-h--hCCc
Confidence            799999999998653110000 11     1234577889999999987 77999999999999999997652 1  2789


Q ss_pred             EEEcCCCChhhHHHHHHHh------hC-----CcEEEEeccCCCCC----------------CCHHHHH-HHhc-----C
Q psy8850          89 IITVQTEHKSVLDSIRKLE------ND-----GFRVTYLKPKNNGL----------------ITLSQLE-EKIC-----S  135 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~------~~-----g~~v~~v~~~~~~~----------------~d~~~l~-~~i~-----~  135 (397)
                      |++.++.|++.......+.      +.     ...++.+|.+++..                +|+++|+ ++++     +
T Consensus       132 vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~  211 (419)
T 2eo5_A          132 IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPE  211 (419)
T ss_dssp             EEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGG
T ss_pred             EEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCC
Confidence            9999988875554433221      11     13577788765422                3688999 8887     4


Q ss_pred             CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CC
Q psy8850         136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KG  204 (397)
Q Consensus       136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g  204 (397)
                      ++++|+++.++|+||.+.+    +++|+++|++||+++|+|++|+ ++..    ..+.....+|+++  ++| +.++ .+
T Consensus       212 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t--~sK~~~~G~~r  289 (419)
T 2eo5_A          212 EVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVIT--LAKALGGGIMP  289 (419)
T ss_dssp             GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTTSC
T ss_pred             CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEE--ecccccCCccc
Confidence            6677777766678898776    8999999999999999999998 4322    1222233567764  559 5544 56


Q ss_pred             ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeC
Q psy8850         205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING  284 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  284 (397)
                      +|+++++++.. .+ ....      .. ....|...+.+..++++...+    +.+++.++++++.+.|++ +  +....
T Consensus       290 iG~~~~~~~~~-~~-~~~~------~~-t~~~n~~~~~aa~aal~~~~~----~~~~~~~~~~~l~~~L~~-~--~~~~~  353 (419)
T 2eo5_A          290 IGATIFRKDLD-FK-PGMH------SN-TFGGNALACAIGSKVIDIVKD----LLPHVNEIGKIFAEELQG-L--ADDVR  353 (419)
T ss_dssp             CEEEEEEGGGC-CC--------------CCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT-S--SSEEE
T ss_pred             eEEEEEchHhh-cC-Cccc------CC-CCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-h--hhheE
Confidence            89999998765 44 2111      11 123455666666678876543    778899999999999988 4  11111


Q ss_pred             CCCCCCCceEEEEecC--CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHH
Q psy8850         285 DMNNRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID  360 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~  360 (397)
                      . .   +.++.+.+..  .... +...|.  ||.+.++.                       .+++||+++...++++++
T Consensus       354 ~-~---g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~-----------------------~~~lRis~~~~~t~e~i~  405 (419)
T 2eo5_A          354 G-I---GLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG-----------------------RSAIRVIPPLVISEEEAK  405 (419)
T ss_dssp             E-E---TTEEEEECSCHHHHHH-HHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHH
T ss_pred             e-e---eEEEEEEEecCccHHH-HHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHH
Confidence            1 1   4455666631  1133 666654  88887641                       278999999889999999


Q ss_pred             HHHHHHHHHHHHH
Q psy8850         361 FTIKLLKMKVKKL  373 (397)
Q Consensus       361 ~~~~~l~~~~~~~  373 (397)
                      +++++|+++++++
T Consensus       406 ~~l~~l~~~l~~~  418 (419)
T 2eo5_A          406 QGLDILKKVIKVV  418 (419)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.95  E-value=1.7e-26  Score=219.36  Aligned_cols=320  Identities=14%  Similarity=0.127  Sum_probs=215.6

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CCCCCcEEEeCChhHHHHHHHH---HhHhhh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YADPREIIWTSGATESNNLAIK---GAAHFY   82 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~i~~~~g~t~a~~~~l~---~l~~~~   82 (397)
                      +++++.+++++.+.+.... ...     ..+...+...++++.|++++ +..+++|++++|+++|+.+++.   ++.   
T Consensus        56 g~~~~~v~~a~~~~~~~~~-~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~---  126 (426)
T 1sff_A           56 GHLHPKVVAAVEAQLKKLS-HTC-----FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT---  126 (426)
T ss_dssp             CBTCHHHHHHHHHHTTTCS-CCC-----TTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH---
T ss_pred             CCCCHHHHHHHHHHHHhCC-Ccc-----ccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh---
Confidence            3478999999999886521 111     12233457788999999999 5223789999999999999988   444   


Q ss_pred             ccCCCEEEEcCCCChhhHH-HHHHHhhC-----Cc-----EEEEeccCC-----CCCCCHHHHHHHhc-----CCceEEE
Q psy8850          83 KKRGKHIITVQTEHKSVLD-SIRKLEND-----GF-----RVTYLKPKN-----NGLITLSQLEEKIC-----SDTILVS  141 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~-~~~~~~~~-----g~-----~v~~v~~~~-----~~~~d~~~l~~~i~-----~~~~~v~  141 (397)
                       +++ +|++.++.|++... .....+..     +.     .++.+|.+.     ++.+|+++|+++++     +++++|+
T Consensus       127 -~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~  204 (426)
T 1sff_A          127 -KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIV  204 (426)
T ss_dssp             -TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred             -CCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEE
Confidence             565 88888888876554 44433110     11     266777753     22468999999886     4678888


Q ss_pred             EecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccccccCCCC--ceEEEE
Q psy8850         142 VMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGPKG--IGALYI  210 (397)
Q Consensus       142 ~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~  210 (397)
                      +++..++||.+.+    +++|.++|++||++||+|++|+ ++..    ..+.....+|++  |++|.+|+ |  +|++++
T Consensus       205 ~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-GlriG~~~~  281 (426)
T 1sff_A          205 IEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPLAGVTG  281 (426)
T ss_dssp             ECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCCEEEEE
T ss_pred             EecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCceEEEEE
Confidence            8654444997776    8999999999999999999998 2211    122222246766  66696555 5  699999


Q ss_pred             ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCC
Q psy8850         211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMN  287 (397)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~  287 (397)
                      +++..+.+......      . ....+....+++.++++.+.+  ..+.+++.++++++++.|++.   ++.+....+ .
T Consensus       282 ~~~~~~~l~~~~~~------~-~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~  351 (426)
T 1sff_A          282 RAEVMDAVAPGGLG------G-TYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG-L  351 (426)
T ss_dssp             EHHHHTTSCTTSBC------C-SSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE-E
T ss_pred             cHHHHhhhccCCcC------c-CCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-E
Confidence            97655554431111      1 123455666677788887765  245677777888888877661   333332222 1


Q ss_pred             CCCCceEEEEecC---------CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850         288 NRIPHNLNISFNF---------IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE  356 (397)
Q Consensus       288 ~~~~~~~~~~~~~---------~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~  356 (397)
                         +.++++.+..         .+..++...|.  ||.+.+|..+                     .+++||+++..+++
T Consensus       352 ---g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~---------------------~~~iRi~~~~~~~~  407 (426)
T 1sff_A          352 ---GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY---------------------YNVLRILVPLTIED  407 (426)
T ss_dssp             ---TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT---------------------SCEEEECCCTTCCH
T ss_pred             ---EEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC---------------------CCEEEEECCccCCH
Confidence               4566777742         12455666665  8888877421                     27899999988999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8850         357 KEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       357 ~~i~~~~~~l~~~~~~~~  374 (397)
                      +++++++++|++++++++
T Consensus       408 ~~i~~~~~~l~~~l~~~~  425 (426)
T 1sff_A          408 AQIRQGLEIISQCFDEAK  425 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999987764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.95  E-value=4.5e-26  Score=214.26  Aligned_cols=313  Identities=17%  Similarity=0.172  Sum_probs=214.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---c
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---K   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---~   84 (397)
                      ..+|++++++.+.+..... .      ......+...+++++++++++  .+++++++||++|+..+++.+...+.   .
T Consensus        52 ~~~p~v~~a~~~~~~~~~~-~------~~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g~  122 (395)
T 3nx3_A           52 YNHAKFNAKIKAQVDKLLH-T------SNLYYNENIAAAAKNLAKASA--LERVFFTNSGTESIEGAMKTARKYAFNKGV  122 (395)
T ss_dssp             BSCHHHHHHHHHHHTTCSC-C------CTTSBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHhccc-c------ccccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccCC
Confidence            4589999999999876321 1      111224567889999999998  45899999999999999987653211   2


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHh----------hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLE----------NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~----------~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                      ++++|++.++.|++.......+.          ..+..+..++.+     |+++|++++++++++|++++++|++|.+.+
T Consensus       123 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~  197 (395)
T 3nx3_A          123 KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNEKTCAIILESVQGEGGINPA  197 (395)
T ss_dssp             TTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTTEEEEEEESEECTTSCEEC
T ss_pred             CCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccCCeEEEEEeCccCCCCcccC
Confidence            46899999998877654433221          113456666654     799999999999999999999999999877


Q ss_pred             ----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCC-CCccccccc
Q psy8850         155 ----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNP-RTRIEAQIH  223 (397)
Q Consensus       155 ----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~-~~~~~~~~~  223 (397)
                          +++|.++|++||+++|+|++|+ ++..    ..+.....+|++++|  | +.++.++|+++++++. .+.+.+...
T Consensus       198 ~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~~~~~~~~~~~~~  275 (395)
T 3nx3_A          198 NKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSA--KALGCGLSVGAFVINQKVASNSLEAGDH  275 (395)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGTTTSCCEEEEECHHHHHHHSCTTCC
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEec--ccccCCCceEEEEEchhhhhhhcCCccc
Confidence                8999999999999999999987 3321    112222346776655  9 5444468999998766 445544322


Q ss_pred             cCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEEecC
Q psy8850         224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFNF  300 (397)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~  300 (397)
                      +.       ....+....++..++++.+.+  +.+.++.+++.+++++.|.+.   ++.+......    +.++.+.++.
T Consensus       276 ~~-------~~~~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----g~~~~~~~~~  342 (395)
T 3nx3_A          276 GS-------TYGGNPLVCAGVNAVFEIFKE--EKILENVNKLTPYLEQSLDELINEFDFCKKRKGL----GFMQGLSLDK  342 (395)
T ss_dssp             SS-------CBSCCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE----TTEEEEEECT
T ss_pred             CC-------CCCCCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeE----EEEEEEEeCC
Confidence            21       113345555655577776643  233444444444444444331   4544433221    4566777765


Q ss_pred             C-ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         301 I-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       301 ~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      . +..++.+.|.  |+.+.++.                       .+++||+++..++++++++++++|++++++
T Consensus       343 ~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  394 (395)
T 3nx3_A          343 SVKVAKVIQKCQENALLLISCG-----------------------ENDLRFLPPLILQKEHIDEMSEKLRKALKS  394 (395)
T ss_dssp             TSCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            3 5667777765  88877652                       389999999889999999999999998753

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.95  E-value=8.8e-26  Score=214.55  Aligned_cols=316  Identities=16%  Similarity=0.140  Sum_probs=210.2

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-c----
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-K----   83 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-~----   83 (397)
                      ++|.+++++.+++.... ...+ .+     ..+...++++.++++++.  +++++++||++|++.+++.+.... +    
T Consensus        82 ~~p~v~~ai~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~g~--~~v~~~~sGseA~~~al~~a~~~~~~~~g~  152 (433)
T 1z7d_A           82 CHPNILNAMINQAKNLT-ICSR-AF-----FSVPLGICERYLTNLLGY--DKVLMMNTGAEANETAYKLCRKWGYEVKKI  152 (433)
T ss_dssp             TCHHHHHHHHHHHTTCS-CCCT-TS-----EEHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHhCC-CccC-Cc-----CCHHHHHHHHHHHhhcCC--CeEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence            78999999999987632 2111 11     234567888999999984  589999999999999999754211 1    


Q ss_pred             cCC-CEEEEcCCCChhhHHH-HHHHhh----CC-----cEEEEeccCCCCCCCHHHHHHHh-cCCceEEEEecccCcccc
Q psy8850          84 KRG-KHIITVQTEHKSVLDS-IRKLEN----DG-----FRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        84 ~~g-~~vl~~~~~~~s~~~~-~~~~~~----~g-----~~v~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~  151 (397)
                      .+| ++|++.++.|++.... +.....    .+     ..+..+|.+     |+++|++++ .+++++|+++++++++|.
T Consensus       153 ~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~~~~vi~ep~~~~~G~  227 (433)
T 1z7d_A          153 PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDPNVCAFIVEPIQGEAGV  227 (433)
T ss_dssp             CTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHHHTSTTEEEEEECSSBSTTTS
T ss_pred             CCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCCCEEEEEEECCCCCCCc
Confidence            245 8999999888776443 222210    01     345556543     899999999 578899999988888998


Q ss_pred             cc----cHHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCCCCcccc
Q psy8850         152 IQ----PILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRIEA  220 (397)
Q Consensus       152 ~~----~l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~  220 (397)
                      +.    ++++|.++|++||+++|+|++|+ ++..    ..+.....+|++  |++| +.++ ..+|+++++++..+.+.+
T Consensus       228 ~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~  305 (433)
T 1z7d_A          228 IVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPISAVLANDDIMLVIKP  305 (433)
T ss_dssp             BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHTTCCT
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeEEEEECHHHHhhhcc
Confidence            76    58999999999999999999997 2221    112222357877  5559 4433 248999998765555443


Q ss_pred             ccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEE
Q psy8850         221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNIS  297 (397)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~  297 (397)
                      ...+      ... ..+...+++..++++.+.+  .++.+++.++++++++.|++.   ++.+.....    .+.++.+.
T Consensus       306 ~~~~------~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~----~g~~~~i~  372 (433)
T 1z7d_A          306 GEHG------STY-GGNPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLKRELKDSKIVRDVRG----KGLLCAIE  372 (433)
T ss_dssp             TCCC------CTT-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEEE
T ss_pred             cccc------ccC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----eeeEEEEE
Confidence            2111      112 3345556666678887654  356778888888888888761   233222211    14566777


Q ss_pred             ecCC--ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         298 FNFI--EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       298 ~~~~--~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ++..  +..++...|.  ||.+.++                       ..+++|++++..++++++++++++|+++++++
T Consensus       373 ~~~~~~~~~~~~~~l~~~Gv~v~~~-----------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  429 (433)
T 1z7d_A          373 FKNELVNVLDICLKLKENGLITRDV-----------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVKFF  429 (433)
T ss_dssp             ECTTTCCHHHHHHHHHHTTEECCEE-----------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EccChhHHHHHHHHHHHCCeEEecC-----------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence            7643  4667777765  8877753                       12789999998899999999999999998876


Q ss_pred             Hhc
Q psy8850         374 REL  376 (397)
Q Consensus       374 ~~~  376 (397)
                      .++
T Consensus       430 ~~~  432 (433)
T 1z7d_A          430 DER  432 (433)
T ss_dssp             C--
T ss_pred             Hhh
Confidence            544

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.95  E-value=3.6e-26  Score=216.46  Aligned_cols=315  Identities=15%  Similarity=0.159  Sum_probs=214.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      ++.++.+++++.+++.... +..+ .+     ..+...++++.++++++.  +++++++||++|++++++++.....   
T Consensus        72 G~~~p~v~~ai~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~g~--~~v~~~~ggteA~~~al~~~~~~~~~~~  142 (420)
T 2pb2_A           72 GHCHPALVEALKSQGETLW-HTSN-VF-----TNEPALRLGRKLIDATFA--ERVLFMNSGTEANETAFKLARHYACVRH  142 (420)
T ss_dssp             CBTCHHHHHHHHHHHTTCC-CCCT-TS-----CCHHHHHHHHHHHHHSSC--SEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHhcc-cccC-cc-----CCHHHHHHHHHHHhhCCC--CeEEEeCCHHHHHHHHHHHHHHHhhhcc
Confidence            3468999999999987632 2211 11     234678899999999984  5899999999999999998763110   


Q ss_pred             cCC-CEEEEcCCCChhhHHHH-HHHhh----CC-----cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850          84 KRG-KHIITVQTEHKSVLDSI-RKLEN----DG-----FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        84 ~~g-~~vl~~~~~~~s~~~~~-~~~~~----~g-----~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~  152 (397)
                      .+| ++|++.++.|++..... ...+.    .+     ..+..+|.+     |+++|++++++++++|++++++|++|.+
T Consensus       143 ~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~~~~~vi~~p~~~~gG~~  217 (420)
T 2pb2_A          143 SPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDDHTCAVVVEPIQGEGGVQ  217 (420)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCTTEEEEEECSEETTTTSE
T ss_pred             CCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhccCceEEEEeCCcCCCCee
Confidence            045 58998888887665433 33210    01     125566643     8999999999999999999999988862


Q ss_pred             -c---cHHHHHHHHHhcCcEEEEecccc-cCcc--c--cccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccc
Q psy8850         153 -Q---PILEIGELCRSKGVIFHCDAAQA-VGKI--D--INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI  222 (397)
Q Consensus       153 -~---~l~~i~~l~~~~gi~livD~a~~-~~~~--~--~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~  222 (397)
                       +   ++++|.++|++||+++|+|++|+ ++..  .  .+.....+|+++  ++| +.++.++|+++++++..+.+....
T Consensus       218 ~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~~~~~~l~~~l~~~~  295 (420)
T 2pb2_A          218 AATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAMLTTQEIASAFHVGS  295 (420)
T ss_dssp             ECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHTTCC---
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEEEEhHHHHHhhcCCC
Confidence             3   47899999999999999999996 2211  1  122223578775  569 444335899999876544443321


Q ss_pred             ccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEEec
Q psy8850         223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFN  299 (397)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~  299 (397)
                      .+      ... ..+....++..++++.+.+  +++.++++++++++.+.|++.   ++.+..... .   +.++.+.++
T Consensus       296 ~~------~t~-~~~~~~~aa~~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~---g~~~~v~~~  362 (420)
T 2pb2_A          296 HG------STY-GGNPLACAVAGAAFDIINT--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG-M---GLLIGAELK  362 (420)
T ss_dssp             -C------CEE-CCCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE-E---TTEEEEEEC
T ss_pred             cC------ccc-CcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-c---ceEEEEEEC
Confidence            11      111 3345555666677776643  467788888888888888761   243332222 1   456677775


Q ss_pred             CC---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         300 FI---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       300 ~~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..   +..++.+.|.  ||.+.++.                       ++++||+++..++++++++++++|+++++++
T Consensus       363 ~~~~~~~~~l~~~l~~~Gi~v~~~~-----------------------~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~  418 (420)
T 2pb2_A          363 PKYKGRARDFLYAGAEAGVMVLNAG-----------------------ADVMRFAPSLVVEEADIHEGMQRFAQAVGKV  418 (420)
T ss_dssp             GGGTTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCEEEeCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            42   4667777765  88877652                       2789999988899999999999999998764

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.95  E-value=2.1e-26  Score=219.49  Aligned_cols=322  Identities=12%  Similarity=0.071  Sum_probs=210.4

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .+|.+++++.+++.....      +.......+...+++++++++++... +++++++||++|+..+++.+...  .+++
T Consensus        60 ~~p~v~~a~~~~~~~~~~------~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~--~~~~  131 (439)
T 3dxv_A           60 GHPAIVAAVSAAAANPAG------ATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKA--TGRS  131 (439)
T ss_dssp             SCHHHHHHHHHHHHSCSC------SCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHH--HSCC
T ss_pred             CCHHHHHHHHHHHHhccC------ccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHH--hCCC
Confidence            689999999999876321      11112234577889999999997655 68999999999999999975321  2446


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCC---c---------EEEEeccCCCCCC-----CHHHHHHHh----cCCceEEEEeccc
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDG---F---------RVTYLKPKNNGLI-----TLSQLEEKI----CSDTILVSVMLVN  146 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g---~---------~v~~v~~~~~~~~-----d~~~l~~~i----~~~~~~v~~~~~~  146 (397)
                      +|++.++.|++.......+....   .         .+..+|.+..+..     |+++|++++    .+++++|++++++
T Consensus       132 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~  211 (439)
T 3dxv_A          132 GVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQ  211 (439)
T ss_dssp             EEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSB
T ss_pred             EEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEcccc
Confidence            67666666655544333221100   0         1233444332222     689999999    5678999999999


Q ss_pred             Cccccccc----HHHHHHHHHhcCcEEEEecccc-cCc----cccccCcccccEEEecccc-ccCCCCceEEEEecCCCC
Q psy8850         147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT  216 (397)
Q Consensus       147 ~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~----~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~  216 (397)
                      +++|.+.|    +++|.++|++||++||+|++|+ ++.    ...+.....+|++  |++| +.++..+|+++++++..+
T Consensus       212 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~riG~~~~~~~~~~  289 (439)
T 3dxv_A          212 SDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPLSAVIAPAEILD  289 (439)
T ss_dssp             STTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCCEEEEEEHHHHT
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcCCcceEEEEECHHHHh
Confidence            99999988    9999999999999999999997 221    1222223356777  5569 443335799999977655


Q ss_pred             ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCce
Q psy8850         217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHN  293 (397)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~  293 (397)
                      .+.....+      ...  .+...+.+..++++.+.+  +.+.++++++.+++++.|.+.   ++.+......    +.+
T Consensus       290 ~~~~~~~~------~t~--~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----g~~  355 (439)
T 3dxv_A          290 CASAFAMQ------TLH--GNPISAAAGLAVLETIDR--DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR----GLA  355 (439)
T ss_dssp             SCSSSSCC------TTT--TCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE----TTE
T ss_pred             hhcCCCcC------CCc--ccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE----EEE
Confidence            55443211      111  344555555567776654  345556666666666665541   3544433322    345


Q ss_pred             EEEEec--------C-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHH
Q psy8850         294 LNISFN--------F-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT  362 (397)
Q Consensus       294 ~~~~~~--------~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~  362 (397)
                      +.+.+.        . ....++.+.+.  |+.+.++..                     .++++||+++...++++++++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~~~~~~t~e~i~~~  414 (439)
T 3dxv_A          356 CGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGM---------------------NGNVLEFTPPLTITETDIHKA  414 (439)
T ss_dssp             EEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEEST---------------------TSCEEEECCCTTCCHHHHHHH
T ss_pred             EEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCC---------------------CCCEEEEECCCCCCHHHHHHH
Confidence            556552        1 11345555554  888877621                     137899999988999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy8850         363 IKLLKMKVKKLRE  375 (397)
Q Consensus       363 ~~~l~~~~~~~~~  375 (397)
                      +++|+++++++.+
T Consensus       415 l~~l~~~l~~~~~  427 (439)
T 3dxv_A          415 LDLLDRAFSELSA  427 (439)
T ss_dssp             HHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.95  E-value=8.9e-27  Score=217.14  Aligned_cols=308  Identities=13%  Similarity=0.052  Sum_probs=204.1

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .+++++++++++.    . +.         ++  .....++++.+++++|++ ++++++++||++|+.+++.++      
T Consensus        39 ~~~~~~~v~~a~~----~-~~---------~~--~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~------   96 (374)
T 2aeu_A           39 GFLIDEKDKALLN----T-YI---------GS--SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL------   96 (374)
T ss_dssp             CCCCCHHHHHHHT----S-TT---------HH--HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH------
T ss_pred             CCCCCHHHHHHHH----H-hc---------Cc--hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC------
Confidence            4577889988875    1 11         11  123356777888899983 467999999999999999865      


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceE-EEEecccCccc-ccccHHHHHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTIL-VSVMLVNNEIG-VIQPILEIGELC  162 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~-v~~~~~~~~tG-~~~~l~~i~~l~  162 (397)
                      +||+|+++.++|+++......+...|.+++.+       .|+++++++ ++++++ |++++++|||| ...++++|.++|
T Consensus        97 ~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~  168 (374)
T 2aeu_A           97 KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTA  168 (374)
T ss_dssp             CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHH
Confidence            68999999998887665444444458898888       289999998 778999 99999999999 888999999999


Q ss_pred             HhcCcEEEEecccccCcc-cc-c--cCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850         163 RSKGVIFHCDAAQAVGKI-DI-N--IQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~-~~-~--~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
                      ++||+++|+|++|+.+.. +. .  ...+++|+++.|+|| +.|+ ++|+++++++..+.+......       ..++++
T Consensus       169 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~-~~G~~~~~~~~~~~l~~~~~~-------~~~~~~  240 (374)
T 2aeu_A          169 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIEGTK-------FGLEAQ  240 (374)
T ss_dssp             HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHHHHT-------TTCBCC
T ss_pred             HHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCc-ceEEEEECHHHHHHHHHhhcc-------ccCCCC
Confidence            999999999999885431 11 1  122467999999999 5555 689999997665555433211       112345


Q ss_pred             hhHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHhhhc---CcEEEeCCCCCCCCceEEEEecCCCh------
Q psy8850         238 THQIVGMGEAFRLARI-EMKEELKRILFL----QKRLYNGLMESI---EEIYINGDMNNRIPHNLNISFNFIEG------  303 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~-~~~~~~~~~~~~----~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------  303 (397)
                      .....++.++++.... .+.+..+..+..    .+.+.+.|.. +   .++.+...+.    +.+.........      
T Consensus       241 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~  315 (374)
T 2aeu_A          241 PPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA-IDDNINIVYERTPT----GFVIKRVYKDDTINIKKL  315 (374)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTT-TCTTEEEEEEECSS----EEEEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcceeeCCc----eEEEEeecccccccccch
Confidence            5556666667665422 233333333333    4566666655 3   3455433322    222222221111      


Q ss_pred             HHHH-HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC-CCCHHHHHHHHHHHHHHHHHHH
Q psy8850         304 ESLL-MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       304 ~~~~-~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~-~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      .++. ..+.  ||.+.+|..+..                  ..+++||+++. ..++.++++++++|+++++++.
T Consensus       316 ~~~~~~ll~~~gV~v~~g~~~~~------------------~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~  372 (374)
T 2aeu_A          316 IEIGFNLLKNYGIITITVAGMPG------------------ASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF  372 (374)
T ss_dssp             HHHHHHHHHHHCEECSTTSSSCS------------------SCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCEEEecCCCCCC------------------CCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence            1143 2332  899988753311                  13689999974 2334458999999998887764

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.95  E-value=7.6e-26  Score=215.09  Aligned_cols=333  Identities=12%  Similarity=0.069  Sum_probs=201.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc----
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK----   83 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~----   83 (397)
                      ..+|.+++++.+.+..... ...     .....+...+++++++++++.+.++|++++||++|+..+++.+...+.    
T Consensus        45 ~~~p~v~~a~~~~~~~~~~-~~~-----~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~  118 (430)
T 3i4j_A           45 HGRAEVGERMAAQAARLPF-VHG-----SQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGE  118 (430)
T ss_dssp             BCCHHHHHHHHHHHHHCCC-CCT-----TTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHhccc-ccc-----cccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCC
Confidence            3589999999999876321 111     112234677889999999998888999999999999999998763211    


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhCCc------------EEEEeccCCC---CCCCHHHHHHHhc----CCceEEEEec
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLENDGF------------RVTYLKPKNN---GLITLSQLEEKIC----SDTILVSVML  144 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~------------~v~~v~~~~~---~~~d~~~l~~~i~----~~~~~v~~~~  144 (397)
                      .++++|++.++.|+++......+.....            .+..+|.+..   +..|+++|+++++    +++++|+++.
T Consensus       119 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p  198 (430)
T 3i4j_A          119 PGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEP  198 (430)
T ss_dssp             TTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECS
T ss_pred             CCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            2367999999999887755444321100            2333443322   2346689999887    5677888888


Q ss_pred             ccC-ccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccC-cccccEEEecccc-ccCC-CCceEEEEe
Q psy8850         145 VNN-EIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQ-NYKVDLMSFSAHK-IYGP-KGIGALYIR  211 (397)
Q Consensus       145 ~~~-~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~-~~~~d~~~~s~~K-~~g~-~g~g~~~~~  211 (397)
                      +++ ++|.+.+    +++|+++|++||++||+|++|+ ++..    ..+.. ...+|++++|  | +.++ ..+|+++++
T Consensus       199 ~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~s--K~l~~G~~r~G~~~~~  276 (430)
T 3i4j_A          199 VVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLG--KGLAAGYAPLAGLLAA  276 (430)
T ss_dssp             SCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEEC--GGGTTTSSCCEEEEEC
T ss_pred             cccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEc--ccccCCccccEEEEEC
Confidence            888 9998777    8999999999999999999987 3221    11222 3346777655  9 4433 347999998


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcEEEeCCCCC
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYINGDMNN  288 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~  288 (397)
                      ++..+.+......  ..... ....+...+.+..++++.+.+  +++.++++++.+++++.|.+   .++.+......  
T Consensus       277 ~~i~~~~~~~~~~--~~~~~-t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--  349 (430)
T 3i4j_A          277 PQVYETVMGGSGA--FMHGF-TYAGHPVSVAAGLSVLDIVER--EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGT--  349 (430)
T ss_dssp             HHHHHHHHHTTCB--CCCCC-TTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE--
T ss_pred             HHHHHHHhccCCc--ccccC-CCCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE--
Confidence            7665554432000  00011 123345555655677876654  23344444444444444433   15666554332  


Q ss_pred             CCCceEEEEecCCC----------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850         289 RIPHNLNISFNFIE----------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE  356 (397)
Q Consensus       289 ~~~~~~~~~~~~~~----------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~  356 (397)
                        +.++.+.+.+.+          ..++.+.+.  ||.+.++..+..                ...++++||+++...++
T Consensus       350 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~----------------~~~~~~iRi~~~~~~t~  411 (430)
T 3i4j_A          350 --GLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEP----------------NGRGDHLLLGPPLSITA  411 (430)
T ss_dssp             --TTEEEEEEC------------CHHHHHHHHHHTTEECC---------------------------CEEEECCCTTCCH
T ss_pred             --EEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccC----------------CCCCCEEEEECCCCCCH
Confidence              345556654221          245666665  888887632211                11247899999988999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy8850         357 KEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       357 ~~i~~~~~~l~~~~~~~  373 (397)
                      +++++++++|+++++++
T Consensus       412 e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          412 AEVDGLLALLAGALEDV  428 (430)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998764

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.95  E-value=6.7e-25  Score=209.59  Aligned_cols=331  Identities=13%  Similarity=0.098  Sum_probs=204.8

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC-
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR-   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~-   85 (397)
                      +..+|.+.+++.+++.......     . .....+...+++++++++++...+++++++||++|++.+++.+...+..+ 
T Consensus        59 G~~~p~v~~A~~~~~~~~~~~~-----~-~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G  132 (448)
T 3dod_A           59 GHRKKELDDAIKKQLGKIAHST-----L-LGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG  132 (448)
T ss_dssp             CBSCHHHHHHHHHHHTTCSCCC-----C-SSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHhccCcc-----c-cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhC
Confidence            3568999999999987631100     0 11123456788999999997666789999999999999999877432123 


Q ss_pred             ---CCEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCCCCCC-----------CHHHHHHHhc---CCce
Q psy8850          86 ---GKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGLI-----------TLSQLEEKIC---SDTI  138 (397)
Q Consensus        86 ---g~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~~~~~-----------d~~~l~~~i~---~~~~  138 (397)
                         +++|++.++.|++.......+...          ...+..+|.+.....           |+++|+++++   ++++
T Consensus       133 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a  212 (448)
T 3dod_A          133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIA  212 (448)
T ss_dssp             CTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEE
Confidence               499999999987766443333110          112344554432222           4889999887   5678


Q ss_pred             EEEEeccc-Cccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCce
Q psy8850         139 LVSVMLVN-NEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIG  206 (397)
Q Consensus       139 ~v~~~~~~-~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g  206 (397)
                      +|+++.++ +++|.+.+    +++|+++|++||++||+|++|+ ++..    ..+.....+|++++|  | +.++ .++|
T Consensus       213 ~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~s--K~l~~G~~~ig  290 (448)
T 3dod_A          213 ALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAG--KGITGGYLPIA  290 (448)
T ss_dssp             EEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCE
T ss_pred             EEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEec--ccccCCcCceE
Confidence            89999888 99998776    8999999999999999999987 3221    122223356777655  9 5444 3679


Q ss_pred             EEEEecCCCCcccccccc-CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCcEEEe
Q psy8850         207 ALYIRRNPRTRIEAQIHG-GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME--SIEEIYIN  283 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~  283 (397)
                      +++++++..+.+...... ........ ...+...+++..++++.+.+  +++.++++++.+++++.|.+  .++.+...
T Consensus       291 ~v~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  367 (448)
T 3dod_A          291 VTFATEDIYKAFYDDYENLKTFFHGHS-YTGNQLGCAVALENLALFES--ENIVEQVAEKSKKLHFLLQDLHALPHVGDI  367 (448)
T ss_dssp             EEEEEHHHHHTTCSCGGGCCCCCCCCT-TTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred             EEEECHHHHHHhhhccccCCcccccCC-CCcCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            999997765555431000 00001111 23344555666678877654  23444555555555555544  14444333


Q ss_pred             CCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850         284 GDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT  349 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (397)
                      ...    +.++.+.+....            ..++...+.  ||.+.++                        +++|||+
T Consensus       368 ~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------------------------~~~iRi~  419 (448)
T 3dod_A          368 RQL----GFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL------------------------GDVIAFL  419 (448)
T ss_dssp             EEE----TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE------------------------TTEEEEC
T ss_pred             Eee----eEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc------------------------CCEEEEE
Confidence            221    345566665321            245666554  7777654                        2789999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         350 IGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ++..++++++++++++|+++++++..+
T Consensus       420 ~~~~~t~e~i~~~l~~l~~~l~~~~~~  446 (448)
T 3dod_A          420 PPLASTAEELSEMVAIMKQAIHEVTSL  446 (448)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence            998899999999999999999887543

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.95  E-value=1.1e-25  Score=225.77  Aligned_cols=297  Identities=15%  Similarity=0.065  Sum_probs=220.0

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN  121 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~  121 (397)
                      ...+.++.+++++|.+ +.+++++|+++|+.+++.+++    ++||+|+++.++|.++..++...   |.+++.++.+.+
T Consensus       206 ~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~----~~GD~Vlv~~~~h~s~~~~~~~~---G~~~v~v~~~~~  277 (755)
T 2vyc_A          206 AFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLMLT---GAKPVYMVPSRN  277 (755)
T ss_dssp             HHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHH---CCEEEEECCCBC
T ss_pred             HHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHHHc---CCEEEEEeCCCC
Confidence            5678899999999987 357888888899999999988    89999999999999999987776   999999987642


Q ss_pred             -----CCC-----CHHHHHHHhcC--Cce--------EEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc-
Q psy8850         122 -----GLI-----TLSQLEEKICS--DTI--------LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-  180 (397)
Q Consensus       122 -----~~~-----d~~~l~~~i~~--~~~--------~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~-  180 (397)
                           +.+     |+++|++++++  +++        +++++++ |++|.+.|+++|+++|++||++|++|++|+.+.. 
T Consensus       278 ~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~  356 (755)
T 2vyc_A          278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF  356 (755)
T ss_dssp             TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGG
T ss_pred             ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhccc
Confidence                 346     99999999965  344        8888887 7999999999999999999999999999974321 


Q ss_pred             -cc--ccCc-cc--ccE------EEecccc-ccCCCCceEEEEecC--CCC--ccccccccCCccccccCCCCchhHHHH
Q psy8850         181 -DI--NIQN-YK--VDL------MSFSAHK-IYGPKGIGALYIRRN--PRT--RIEAQIHGGGHEYGLRSGTLATHQIVG  243 (397)
Q Consensus       181 -~~--~~~~-~~--~d~------~~~s~~K-~~g~~g~g~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (397)
                       +.  +... .+  +|+      +++|+|| +.|+.++|+++++++  ...  .+....      ..+..++++...+++
T Consensus       357 ~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~------~~~~s~sp~~~~iaa  430 (755)
T 2vyc_A          357 NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY------MMHATTSPLYAICAS  430 (755)
T ss_dssp             CGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHH------HHTSCSSCCHHHHHH
T ss_pred             CcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHH------HHhCCCCHHHHHHHH
Confidence             10  1111 24  565      9999999 677777899989875  221  111111      224457889999999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCc---------EEEeCCCCC-------------------------
Q psy8850         244 MGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEE---------IYINGDMNN-------------------------  288 (397)
Q Consensus       244 l~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~---------~~~~~~~~~-------------------------  288 (397)
                      +.++++.+... ..++.++..++.+++++.|.+ +++         +.++++...                         
T Consensus       431 l~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (755)
T 2vyc_A          431 NDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMAR-LYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDC  509 (755)
T ss_dssp             HHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGG
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-ccccccccccceeeccCchhccccccccccccccccchhccchhhh
Confidence            99999987543 577888999999999999988 766         666654210                         


Q ss_pred             ----------------C-----CCceEEEEecC-----------CChHHHHHHhCCcEecccCccCCCCCChhhHHHhhC
Q psy8850         289 ----------------R-----IPHNLNISFNF-----------IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALG  336 (397)
Q Consensus       289 ----------------~-----~~~~~~~~~~~-----------~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~g  336 (397)
                                      .     .+..+.+..++           +++..+.+.|.                      ..|
T Consensus       510 ~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~----------------------~~g  567 (755)
T 2vyc_A          510 WVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLG----------------------RHG  567 (755)
T ss_dssp             TBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHH----------------------TTT
T ss_pred             hccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHH----------------------HCC
Confidence                            0     12344444442           23345555543                      223


Q ss_pred             CCccc-cCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         337 CNDEL-AHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       337 ~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      +.... ..+.+|++++..+|++++++++++|.++.+.+.+.
T Consensus       568 I~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~~~  608 (755)
T 2vyc_A          568 IVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDAN  608 (755)
T ss_dssp             CCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHHHT
T ss_pred             CEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhhcc
Confidence            22211 24789999999999999999999999998877543

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.95  E-value=1.3e-25  Score=210.50  Aligned_cols=307  Identities=14%  Similarity=0.096  Sum_probs=207.7

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH--hhC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL--END  109 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~--~~~  109 (397)
                      .+.+++...+...++++.++++.+.+  ..++++||++|+.+ +..+.    ++||+|+++.+.|+++...+...  ...
T Consensus        58 ~~~y~r~~~p~~~~l~~~la~l~g~~--~~~~~~sG~~Ai~~-~~~l~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~~  130 (400)
T 3nmy_A           58 GFEYSRTHNPTRFAYERCVAALEGGT--RAFAFASGMAATST-VMELL----DAGSHVVAMDDLYGGTFRLFERVRRRTA  130 (400)
T ss_dssp             SCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTTS----CTTCEEEEESSCCHHHHHHHHHTHHHHH
T ss_pred             CcccccCCCHHHHHHHHHHHHHhCCC--CEEEecCHHHHHHH-HHHHc----CCCCEEEEeCCCchHHHHHHHHhhHhhc
Confidence            34455555678889999999999976  67778888999998 45555    78999999999999887776543  334


Q ss_pred             CcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccc
Q psy8850         110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV  189 (397)
Q Consensus       110 g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~  189 (397)
                      |.+++.++.+     |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++++.+.... ...+++
T Consensus       131 g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-~~~~g~  204 (400)
T 3nmy_A          131 GLDFSFVDLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQR-PLSLGA  204 (400)
T ss_dssp             CCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-GGGGTC
T ss_pred             CeEEEEECCC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCC-hhhcCC
Confidence            9999999876     8999999999999999999999999999999999999999999999999998543221 123479


Q ss_pred             cEEEeccccc-cCCC-C-ce-EEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHKI-YGPK-G-IG-ALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILF  264 (397)
Q Consensus       190 d~~~~s~~K~-~g~~-g-~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~  264 (397)
                      |+++.|++|. .|+. . .| +++++++ ..+.+......      + ....+....+.+...++    .+..+.++..+
T Consensus       205 div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~------~-g~~~~~~~a~~~l~~l~----~l~~r~~~~~~  273 (400)
T 3nmy_A          205 DLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS------I-GGVQGPFDSFLALRGLK----TLPLRMRAHCE  273 (400)
T ss_dssp             SEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHH------H-CCBCCHHHHHHHHHHHT----THHHHHHHHHH
T ss_pred             cEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHh------c-CCCCCHHHHHHHHHhHh----HHHHHHHHHHH
Confidence            9999999994 4441 2 35 4444332 22233222111      1 11222222222223333    34556777788


Q ss_pred             HHHHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC--ChHHHHHHhC--CcEecccCccC----
Q psy8850         265 LQKRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACT----  322 (397)
Q Consensus       265 ~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----  322 (397)
                      ++..+.+.|++ .+.+..+..+.              ...+.++.|.+++.  ....+.+.++  ++.+..|..++    
T Consensus       274 ~a~~l~~~L~~-~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~  352 (400)
T 3nmy_A          274 NALALAQWLET-HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNH  352 (400)
T ss_dssp             HHHHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEEC
T ss_pred             HHHHHHHHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeC
Confidence            88999999988 77776543322              22356788888642  2356666666  45556665443    


Q ss_pred             CCCCC----hhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         323 SASLE----PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       323 ~~~~~----~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      |..+.    +.......|+.+    +.+|+|++...    .+.+++.|+++++
T Consensus       353 p~~~~~~~~~~~~~~~~gi~~----~liRlsvGle~----~~dli~dl~~al~  397 (400)
T 3nmy_A          353 PAVMTHASIPVARREQLGISD----ALVRLSVGIED----LGDLRGDLERALV  397 (400)
T ss_dssp             TTTTTTTTSCHHHHHHHTCCT----TEEEEECCSSC----HHHHHHHHHHHHC
T ss_pred             ccccccccCCHHHHHhcCCCc----CeEEEEeCcCC----HHHHHHHHHHHHh
Confidence            21111    233455667665    89999999744    4445555555543

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.94  E-value=7.6e-25  Score=209.50  Aligned_cols=331  Identities=12%  Similarity=0.084  Sum_probs=213.6

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-cc-
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-KK-   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-~~-   84 (397)
                      +..+|+|++++.+++.... . ..     .....+...+++++++++++.+.+ +++++||++|++.+++.+...+ .. 
T Consensus        64 G~~~p~v~~A~~~~~~~~~-~-~~-----~~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g  135 (452)
T 3n5m_A           64 GYGRKELAEAAYKQLQTLS-Y-FP-----MSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKG  135 (452)
T ss_dssp             CBCCHHHHHHHHHHHTTCC-C-CC-----TTSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHhcC-C-cc-----cccCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcC
Confidence            3568999999999987622 1 11     112235678899999999988766 9999999999999999876321 12 


Q ss_pred             --CCCEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCCCC--C-CC---------HHHHHHHhc----CC
Q psy8850          85 --RGKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNG--L-IT---------LSQLEEKIC----SD  136 (397)
Q Consensus        85 --~g~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~~~--~-~d---------~~~l~~~i~----~~  136 (397)
                        ++++|++.++.|++.......+...          ...+..++.....  . -|         +++|+++++    ++
T Consensus       136 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~  215 (452)
T 3n5m_A          136 EPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSET  215 (452)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGG
T ss_pred             CCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCC
Confidence              6789999999998776554443210          1124445432111  1 12         899999987    57


Q ss_pred             ceEEEEecc-cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CC
Q psy8850         137 TILVSVMLV-NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KG  204 (397)
Q Consensus       137 ~~~v~~~~~-~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g  204 (397)
                      +++|+++.+ +| +|.+.|    +++|+++|++||++||+|++|+ ++..    ..+.....+|++++|  | +.++ .+
T Consensus       216 ~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G~~~  292 (452)
T 3n5m_A          216 IAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMA--KGITSAYLP  292 (452)
T ss_dssp             EEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSC
T ss_pred             EEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeec--ccccCCCcc
Confidence            889999988 89 998887    8999999999999999999987 3221    122233357777655  9 5444 56


Q ss_pred             ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEE
Q psy8850         205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIY  281 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~  281 (397)
                      +|+++++++..+.+............... ..+...+++..++++.+.+  +.+.++++++.+++++.|.+.   ++.+.
T Consensus       293 ig~~~~~~~i~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~  369 (452)
T 3n5m_A          293 LSATAVKREIYEAFKGKGEYEFFRHINTF-GGNPAACALALKNLEIIEN--ENLIERSAQMGSLLLEQLKEEIGEHPLVG  369 (452)
T ss_dssp             CEEEEEEHHHHGGGCSSSTTCSCCCCCSS-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred             eEEEEECHHHHHHHhhccCCCCccccCCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            89999998766555320000100011122 2344555555577876654  344555555566666555441   45444


Q ss_pred             EeCCCCCCCCceEEEEecCC--C--------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe
Q psy8850         282 INGDMNNRIPHNLNISFNFI--E--------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT  349 (397)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~  349 (397)
                      .....    +.++.+.+...  +        ..++...+.  |+.+.++..+.+                 ..+++|||+
T Consensus       370 ~~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~-----------------~~~~~iRi~  428 (452)
T 3n5m_A          370 DIRGK----GLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTA-----------------GYNNILTLA  428 (452)
T ss_dssp             EEEES----SSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSST-----------------TCCCEEEEC
T ss_pred             EEEEE----EEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccC-----------------CCCCEEEEE
Confidence            43322    33445555211  1        134555554  888888754432                 114899999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         350 IGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       350 ~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ++..++++++++++++|++++++
T Consensus       429 ~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          429 PPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHh
Confidence            99889999999999999988753

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.94  E-value=4.2e-25  Score=211.64  Aligned_cols=334  Identities=11%  Similarity=0.054  Sum_probs=216.0

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|.+++++.+++......     +.......+...++++.++++++.+.+++++++||++|++.+++.+...+.   
T Consensus        66 G~~~p~v~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g  140 (460)
T 3gju_A           66 GYGRQKIADAIATQAKNLAYY-----HAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLG  140 (460)
T ss_dssp             CBCCHHHHHHHHHHHHHHSCC-----CCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHhcccc-----ccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence            456899999999998763210     111111234577899999999887777899999999999999998763211   


Q ss_pred             -cCCCEEEEcCCCChhhHHHHHHHhh----------CCcEEEEeccCC-----CCCCC--------HHHHHHHhc----C
Q psy8850          84 -KRGKHIITVQTEHKSVLDSIRKLEN----------DGFRVTYLKPKN-----NGLIT--------LSQLEEKIC----S  135 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~~~~~~~~----------~g~~v~~v~~~~-----~~~~d--------~~~l~~~i~----~  135 (397)
                       .++++|++.++.|++.......+..          ....+..++...     +..++        +++|+++++    +
T Consensus       141 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~  220 (460)
T 3gju_A          141 RPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPE  220 (460)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             CCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCC
Confidence             2468899988888877655544311          012344555331     11123        688998886    5


Q ss_pred             CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CC
Q psy8850         136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KG  204 (397)
Q Consensus       136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g  204 (397)
                      ++++|+++.+++++|.+.+    +++|+++|++||++||+|++|+ ++...    .+.....+|++++|  | +.|+ ..
T Consensus       221 ~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l~gG~~~  298 (460)
T 3gju_A          221 TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIA--KGLTSAYAP  298 (460)
T ss_dssp             GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSC
T ss_pred             CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeee--hhhcCCCCC
Confidence            6789999999999998766    8999999999999999999998 43221    12222357777665  9 5553 35


Q ss_pred             ceEEEEecCCCCccccccc-cCCccccccCCCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCcEE
Q psy8850         205 IGALYIRRNPRTRIEAQIH-GGGHEYGLRSGTLATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGLMESIEEIY  281 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~  281 (397)
                      +|+++++++..+.+..... .......... ..+...+++..++++.+.+.  +++..+....+++.|.+.+.+ ++.+.
T Consensus       299 lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~  376 (460)
T 3gju_A          299 LSGVIVADRVWQVLVQGSDKLGSLGHGWTY-SAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGG-HKNVG  376 (460)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHCSCSCCCTT-TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT-STTEE
T ss_pred             eEEEEECHHHHHHHhcccccccccccCCCC-CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-CCCeE
Confidence            8999999776555531100 0000011112 33445555666788876542  444445555555556565655 55554


Q ss_pred             EeCCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         282 INGDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      .....    +.++.+.+....            ..++...+.  ||.+.++.                      ..++||
T Consensus       377 ~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------------------~~~~iR  430 (460)
T 3gju_A          377 EVRGD----GMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP----------------------QGDILG  430 (460)
T ss_dssp             EEEEE----TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS----------------------SSCEEE
T ss_pred             EEeee----eEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC----------------------CCCEEE
Confidence            44322    345556654221            234555554  88777652                      128899


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      |+++...+++++++++++|+++++++.+
T Consensus       431 i~~~~~~t~e~i~~~l~~l~~~l~~~~~  458 (460)
T 3gju_A          431 FAPPLCLTREQADIVVSKTADAVKSVFA  458 (460)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999889999999999999999987653

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.94  E-value=1.1e-25  Score=214.87  Aligned_cols=328  Identities=13%  Similarity=0.068  Sum_probs=218.8

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|.+.+++.+++.......      .+....+...++++.|+++++...+++++++||++|++.+++.+...+.   
T Consensus        90 Gh~~p~v~~A~~~~~~~~~~~~------~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g  163 (457)
T 3tfu_A           90 GHGHPALDQALTTQLRVMNHVM------FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRG  163 (457)
T ss_dssp             CBTCHHHHHHHHHHHHHCSCCC------SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHhccCcc------ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcC
Confidence            4568999999999987632111      1112234667899999999987777999999999999999997763210   


Q ss_pred             -cCCCEEEEcCCCChhhHHHHHHHhh-----------CCcEEEEeccC--CCCCCCHHHHHHHhc---CCceEEEEec-c
Q psy8850          84 -KRGKHIITVQTEHKSVLDSIRKLEN-----------DGFRVTYLKPK--NNGLITLSQLEEKIC---SDTILVSVML-V  145 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~~~~~~~~-----------~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~-~  145 (397)
                       .++++|++.++.|++.......+..           ....+..++..  ..+..|+++|+++++   +++++|+++. +
T Consensus       164 ~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~  243 (457)
T 3tfu_A          164 LPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVV  243 (457)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSE
T ss_pred             CCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence             1235888888887766544433311           01123333432  222358899999997   6789999999 9


Q ss_pred             cCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCC
Q psy8850         146 NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNP  214 (397)
Q Consensus       146 ~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~  214 (397)
                      +|++|.+.+    +++|.++|++||++||+|++|. ++..    ..+.....+|++++  +| +.|+ .++|+++++++.
T Consensus       244 ~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~--sK~l~gG~~~lG~v~~~~~i  321 (457)
T 3tfu_A          244 QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCV--GKALTGGYLSLAATLCTADV  321 (457)
T ss_dssp             ECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCCEEEEEEHHH
T ss_pred             cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEE--ChhhhCCCcceEEEEEcHHH
Confidence            999999887    8999999999999999999987 3321    11222335788755  59 6553 358999999766


Q ss_pred             CCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcEEEeCCCCCCCCc
Q psy8850         215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--IEEIYINGDMNNRIPH  292 (397)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~  292 (397)
                      .+.+.....+ ........ ..|...+++..++++.+.+  +.+.+++.++.+++++.|++.  ++.+......    +.
T Consensus       322 ~~~~~~~~~~-~~~~~~t~-~~n~~a~aaa~aaL~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~----G~  393 (457)
T 3tfu_A          322 AHTISAGAAG-ALMHGPTF-MANPLACAVSVASVELLLG--QDWRTRITELAAGLTAGLDTARALPAVTDVRVC----GA  393 (457)
T ss_dssp             HHHHHHSSSC-SCCCCCTT-TTCHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC----SS
T ss_pred             HHHhhccCCC-ceeEecCC-CcCHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecC----Ce
Confidence            5544210000 00011112 3344555555577887654  356777788888888888761  2444333221    44


Q ss_pred             eEEEEecC-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         293 NLNISFNF-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       293 ~~~~~~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      ++.+.+.. .+..++.+.|.  ||.+.+.                        ++.+||+++..++++++++++++|+++
T Consensus       394 ~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~------------------------~~~lRi~p~~~~t~eei~~~l~~L~~~  449 (457)
T 3tfu_A          394 IGVIECDRPVDLAVATPAALDRGVWLRPF------------------------RNLVYAMPPYICTPAEITQITSAMVEV  449 (457)
T ss_dssp             CEEEEESSCCCHHHHHHHHHHTTEECCCB------------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCcccHHHHHHHHHHCCeEEEec------------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56666654 24567777765  7777643                        278999999889999999999999999


Q ss_pred             HHHHH
Q psy8850         370 VKKLR  374 (397)
Q Consensus       370 ~~~~~  374 (397)
                      +++++
T Consensus       450 l~~~~  454 (457)
T 3tfu_A          450 ARLVG  454 (457)
T ss_dssp             HHHC-
T ss_pred             HHHhc
Confidence            98764

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.94  E-value=6.6e-26  Score=217.19  Aligned_cols=308  Identities=17%  Similarity=0.107  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCC-hhhHHHHHHHhhCCcEEEEecc
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH-KSVLDSIRKLENDGFRVTYLKP  118 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~-~s~~~~~~~~~~~g~~v~~v~~  118 (397)
                      .....++++.++++++.+  ++++++||++|+.++++++.    ++||  +++.++| +++...+...   |.+++.+++
T Consensus        74 ~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~al~~l~----~~gd--i~~~~~~~~~~~~~~~~~---G~~~~~v~~  142 (456)
T 2ez2_A           74 SENFYHLERTVQELFGFK--HIVPTHQGRGAENLLSQLAI----KPGQ--YVAGNMYFTTTRYHQEKN---GAVFVDIVR  142 (456)
T ss_dssp             CHHHHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHHC----CTTC--EEEESSCCHHHHHHHHHT---TCEEEECBC
T ss_pred             ChhHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC----CCCC--EeccccccchhHHHHHHc---CCEEEEecc
Confidence            346788999999999976  79999999999999999886    7888  6777888 7767666655   999999988


Q ss_pred             CC----------CCCCCHHHHHHHhcCCc----eEEEEecccC-ccccccc---HHHHHHHHHhcCcEEEEecccccC--
Q psy8850         119 KN----------NGLITLSQLEEKICSDT----ILVSVMLVNN-EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVG--  178 (397)
Q Consensus       119 ~~----------~~~~d~~~l~~~i~~~~----~~v~~~~~~~-~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~--  178 (397)
                      +.          ++.+|+++|++++++++    ++|++++++| |||.+.|   +++|+++|++||+++|+|++|+.|  
T Consensus       143 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~  222 (456)
T 2ez2_A          143 DEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENA  222 (456)
T ss_dssp             GGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHH
T ss_pred             cccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccc
Confidence            63          25789999999998765    8999999998 9999888   899999999999999999999864  


Q ss_pred             -------ccccccC--------cccccEEEeccccccCCCCceEEEEe-cCCCCccccccccCCccccccCCCCchhHHH
Q psy8850         179 -------KIDINIQ--------NYKVDLMSFSAHKIYGPKGIGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIV  242 (397)
Q Consensus       179 -------~~~~~~~--------~~~~d~~~~s~~K~~g~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (397)
                             ....+..        ....|++++|++|+++++..|+++.+ ++....+......+. .. ...+..+...+.
T Consensus       223 ~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~  300 (456)
T 2ez2_A          223 YFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYE-GM-PSYGGLAGRDME  300 (456)
T ss_dssp             HHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHT-CC-TTTTTCCHHHHH
T ss_pred             ccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCceeEEEECCHHHHHHHHHHHhhcc-Cc-ccccCcchhHHH
Confidence                   1111110        12368888888886554335888883 444443332211100 00 011122222222


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEe----cCCChHHH-----HHHh-C
Q psy8850         243 GMGEAFRLARIEM-KEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF----NFIEGESL-----LMAI-K  311 (397)
Q Consensus       243 ~l~~al~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~l-~  311 (397)
                      ++  ++... +.+ +.+.++..++.+++.+.|++ . ++.+..+..   ...+++.+    ++.+..++     ...| .
T Consensus       301 a~--a~~~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  372 (456)
T 2ez2_A          301 AM--AIGLR-EAMQYEYIEHRVKQVRYLGDKLKA-A-GVPIVEPVG---GHAVFLDARRFCEHLTQDEFPAQSLAASIYV  372 (456)
T ss_dssp             HH--HHHHH-HHTCHHHHHHHHHHHHHHHHHHHH-T-TCCBCSSCC---SSEEEEEHHHHTTTSCGGGCHHHHHHHHHHH
T ss_pred             HH--HHHHH-HHhHHHHHHHHHHHHHHHHHHHhc-C-CCccccCCC---ceEEEEEhHHhcCCCChhhccHHHHHHHHHH
Confidence            21  22211 223 45666777788889999988 3 665544322   34555554    23344444     5555 2


Q ss_pred             --CcEecc-cCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHHHh
Q psy8850         312 --DIAVSS-GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       312 --~i~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                        ||.+.+ |..|.+.  .+     ..|.......+.|||+++.. ++++++++++++|++++++..+
T Consensus       373 ~~gv~~~~~g~~~~~~--~~-----~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~~  433 (456)
T 2ez2_A          373 ETGVRSMERGIISAGR--NN-----VTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKED  433 (456)
T ss_dssp             HHSEECEEESHHHHCB--CT-----TTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred             hcCeeeeccccccccc--Cc-----cccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence              777544 4433220  00     00111111237899999976 7999999999999999877544

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.94  E-value=5.4e-25  Score=210.97  Aligned_cols=341  Identities=13%  Similarity=0.083  Sum_probs=223.8

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|.|++++.+++......     +.......+...++.+.|+++++.+.+++++++||++|++.+++.+...+.   
T Consensus        70 Gh~~p~v~~A~~~~~~~~~~~-----~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g  144 (472)
T 3hmu_A           70 GYGRDELAEVAARQMRELPYY-----NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKG  144 (472)
T ss_dssp             CBCCHHHHHHHHHHHHHCSCC-----CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHhcccc-----ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcC
Confidence            456899999999998763210     111111234567899999999987777899999999999999998763211   


Q ss_pred             -cCCCEEEEcCCCChhhHHHHHHHhhC---------CcEEEEeccCC-----CCCCC--------HHHHHHHhc----CC
Q psy8850          84 -KRGKHIITVQTEHKSVLDSIRKLEND---------GFRVTYLKPKN-----NGLIT--------LSQLEEKIC----SD  136 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~~~~~~~~~---------g~~v~~v~~~~-----~~~~d--------~~~l~~~i~----~~  136 (397)
                       .++++|++.++.|++.......+...         ...+..++.+.     ++ .|        +++|+++++    ++
T Consensus       145 ~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~  223 (472)
T 3hmu_A          145 QPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENR  223 (472)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             CCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCC
Confidence             14678888888888776554443210         01344555332     11 33        788998886    56


Q ss_pred             ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CCc
Q psy8850         137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KGI  205 (397)
Q Consensus       137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g~  205 (397)
                      +++|+++.+++++|.+.+    +++|.++|++||++||+|++|+ +|...    .+.....+|++++|  | +.|+ .++
T Consensus       224 ~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~gg~~pl  301 (472)
T 3hmu_A          224 VAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSSGYAPI  301 (472)
T ss_dssp             EEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSCC
T ss_pred             EEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeec--hhhhcCCcce
Confidence            789999999999999887    8999999999999999999997 33221    12223357888766  9 5553 458


Q ss_pred             eEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhc---CcEE
Q psy8850         206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL-FLQKRLYNGLMESI---EEIY  281 (397)
Q Consensus       206 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~---~~~~  281 (397)
                      |+++++++..+.+...    ........ ..+...+++..++++.+.+  +.+.+++. ++.+++++.|++ +   +.+.
T Consensus       302 G~v~~~~~i~~~~~~~----~~~~~~t~-~~np~a~aAa~aaL~~~~~--~~~~~~~~~~~~~~l~~~L~~-l~~~~~v~  373 (472)
T 3hmu_A          302 GGSIVCDEVAHVIGKD----EFNHGYTY-SGHPVAAAVALENLRILEE--ENILDHVRNVAAPYLKEKWEA-LTDHPLVG  373 (472)
T ss_dssp             EEEEEEHHHHHHHTTS----CBCCCCTT-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHTHHHHHHHHHHG-GGGSTTEE
T ss_pred             EEEEECHHHHHhcccC----CccccCCC-CCCHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHH-HhcCCCeE
Confidence            9999987665554211    00111122 2344555555578887654  35666777 777777777765 4   3343


Q ss_pred             EeCCCCCCCCceEEEEecCCC-------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceE
Q psy8850         282 INGDMNNRIPHNLNISFNFIE-------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI  346 (397)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i  346 (397)
                      .+...    +.++.+.+....             ...+...|.  |+.+.++                        +++|
T Consensus       374 ~vr~~----G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------------------------g~~i  425 (472)
T 3hmu_A          374 EAKIV----GMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV------------------------GDRM  425 (472)
T ss_dssp             EEEEE----TTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE------------------------TTEE
T ss_pred             EEEec----CceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec------------------------CCEE
Confidence            33221    345556654211             234555544  6666543                        2789


Q ss_pred             EEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccchhhhccccccccccccC
Q psy8850         347 RFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKEGIDLNTIKWAIH  397 (397)
Q Consensus       347 Ri~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (397)
                      ||+++..++++++++++++|+++++++.+.      -+.++++++++=-||
T Consensus       426 Ri~p~~~~t~e~i~~~l~~l~~~l~~~~~~------~~~~~~~~~~~~~~~  470 (472)
T 3hmu_A          426 IISPPLVITPAEIDEMFVRIRKSLDEAQAE------IEKQGLMKSEGHHHH  470 (472)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHHHHHH------HHHHTCCCBTTCCC-
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHhhhcCCCCCcC
Confidence            999998899999999999999999877542      234566666655444

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.94  E-value=5.4e-26  Score=217.30  Aligned_cols=327  Identities=13%  Similarity=0.064  Sum_probs=216.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      ++.++++++++.+++....  .+. ...   ...+...++++.++++++.++++|++++||++|++++++++.....   
T Consensus        65 G~~~~~v~~a~~~~~~~~~--~~~-~~~---~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g  138 (449)
T 3a8u_X           65 GHTRKEIQEAVAKQLSTLD--YSP-GFQ---YGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKG  138 (449)
T ss_dssp             CBSCHHHHHHHHHHTTTCS--CCC-SSS---CCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHhCC--Ccc-ccc---cCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence            3458999999999987632  111 101   1123567889999999987777899999999999999998763221   


Q ss_pred             -cCCCEEEEcCCCChhhHH-HHHHHhh----CC-----cEEEEeccCCCC-----CCC--------HHHHHHHhc----C
Q psy8850          84 -KRGKHIITVQTEHKSVLD-SIRKLEN----DG-----FRVTYLKPKNNG-----LIT--------LSQLEEKIC----S  135 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~-~~~~~~~----~g-----~~v~~v~~~~~~-----~~d--------~~~l~~~i~----~  135 (397)
                       .++++|++.++.|++... ++...+.    .+     ..+..++.+...     .+|        +++|+++++    +
T Consensus       139 ~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~  218 (449)
T 3a8u_X          139 QATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDAS  218 (449)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGG
T ss_pred             CCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCC
Confidence             167899998888876643 4333210    01     124445443211     246        999999987    4


Q ss_pred             CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccccccCC--CC
Q psy8850         136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGP--KG  204 (397)
Q Consensus       136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~g~--~g  204 (397)
                      ++++|++++.+++||.+.|    +++|.++|++||++||+|++|+ ++..    ..+.....+|++  |++|.+++  ..
T Consensus       219 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~  296 (449)
T 3a8u_X          219 NIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTNGAIP  296 (449)
T ss_dssp             GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSSC
T ss_pred             CEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccCCCCc
Confidence            6788888877788999888    9999999999999999999994 5532    112222346877  55594443  23


Q ss_pred             ceEEEEecCCCCccccccc--c-CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--
Q psy8850         205 IGALYIRRNPRTRIEAQIH--G-GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE--  279 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--  279 (397)
                      +|+++++++..+.+.....  . ....... ..+.+...+++..++++.+.+  ..+.++++++.+++++.|++ +..  
T Consensus       297 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~-t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~-l~~~~  372 (449)
T 3a8u_X          297 MGAVIASTEIYQTFMNQPTPEYAVEFPHGY-TYSAHPVACAAGLAALCLLQK--ENLVQSVAEVAPHFEKALHG-IKGAK  372 (449)
T ss_dssp             CEEEEEEHHHHHHHHTCSSCTTSCSSCCCC-TTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHT-TTTST
T ss_pred             eEEEEECHHHHHHhhccCcccccccccccC-CCcccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HhcCC
Confidence            8999998765444432110  0 0000111 123355566666678887665  35678888888999998877 432  


Q ss_pred             -EEEeCCCCCCCCceEEEEecCCC------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850         280 -IYINGDMNNRIPHNLNISFNFIE------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI  350 (397)
Q Consensus       280 -~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  350 (397)
                       +.....    .+.++++.++...      ..++...|.  ||.+.++                        ++++||++
T Consensus       373 ~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------------------------g~~iRis~  424 (449)
T 3a8u_X          373 NVIDIRN----FGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG------------------------GDTLQFGP  424 (449)
T ss_dssp             TEEEEEE----ETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE------------------------TTEEEECC
T ss_pred             CeEEEee----eEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC------------------------CCEEEEEC
Confidence             221111    1456777776431      125666665  8877754                        17899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         351 GRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       351 ~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +..++++++++++++|+++++++
T Consensus       425 ~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          425 TFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999988654

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.94  E-value=3.1e-25  Score=211.10  Aligned_cols=311  Identities=15%  Similarity=0.155  Sum_probs=214.3

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-c----
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-K----   83 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-~----   83 (397)
                      ++|.+++++.+++.... ...+ .+     ..+...++++.++++++.  +++++++||++|++.+++++..+. +    
T Consensus        93 ~~p~v~~Ai~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~g~--~~v~~~~sGseA~~~al~~~~~~~~~~~g~  163 (439)
T 2oat_A           93 CHPKIVNALKSQVDKLT-LTSR-AF-----YNNVLGEYEEYITKLFNY--HKVLPMNTGVEAGETACKLARKWGYTVKGI  163 (439)
T ss_dssp             TCHHHHHHHHHHHTTCS-CCCT-TS-----EESSHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHhcC-cccC-cc-----CCHHHHHHHHHHHHhcCC--CEEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence            78999999999987632 1111 11     123567888999999974  589999999999999999765321 1    


Q ss_pred             cCC-CEEEEcCCCChhhHH-HHHHHh----hCC-----cEEEEeccCCCCCCCHHHHHHHh-cCCceEEEEecccCcccc
Q psy8850          84 KRG-KHIITVQTEHKSVLD-SIRKLE----NDG-----FRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGV  151 (397)
Q Consensus        84 ~~g-~~vl~~~~~~~s~~~-~~~~~~----~~g-----~~v~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~  151 (397)
                      .+| ++|++.++.|++... ++....    ..+     ..+..+|.+     |+++|++++ .+++++|+++++++++|.
T Consensus       164 ~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~~~~vi~ep~~~~~G~  238 (439)
T 2oat_A          164 QKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQDPNVAAFMVEPIQGEAGV  238 (439)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTSTTEEEEEECSSBTTTTS
T ss_pred             CCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCCCCEEEEEEECCCCCCCC
Confidence            234 789888888876543 333221    001     356667654     899999999 467889999888888998


Q ss_pred             cc----cHHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCCCCcccc
Q psy8850         152 IQ----PILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRIEA  220 (397)
Q Consensus       152 ~~----~l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~  220 (397)
                      +.    ++++|.++|++||+++|+|++|. ++..    ..+.....+|++  |++| +.++ ..+|+++++++..+.+.+
T Consensus       239 ~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~  316 (439)
T 2oat_A          239 VVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKP  316 (439)
T ss_dssp             BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCT
T ss_pred             cCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccCCCCCeEEEEECHHHHhccCC
Confidence            76    58999999999999999999996 2211    112223357877  5569 5443 348999999765555543


Q ss_pred             ccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcEEEeCCCCCCCCceEEEEe
Q psy8850         221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISF  298 (397)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~  298 (397)
                      ...+      ... ..+....++..++++.+.+  .++.+++.++++++++.|++ +  +.+.....    .+.++.+.+
T Consensus       317 ~~~~------~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~~~----~g~~~~v~l  382 (439)
T 2oat_A          317 GEHG------STY-GGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMK-LPSDVVTAVRG----KGLLNAIVI  382 (439)
T ss_dssp             TSSC------CSS-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTT-SCTTTEEEEEE----ETTEEEEEE
T ss_pred             CCcc------cCC-CcCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH-hcCCCcEEEEe----eeeEEEEEE
Confidence            2111      112 2344555666678887655  35778889999999999988 4  21111111    145667777


Q ss_pred             cC---CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         299 NF---IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       299 ~~---~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +.   .+..++...|.  ||.+.++                       .++++|++++..++++++++++++|++++++
T Consensus       383 ~~~~~~~~~~l~~~l~~~Gv~v~~~-----------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          383 KETKDWDAWKVCLRLRDNGLLAKPT-----------------------HGDIIRFAPPLVIKEDELRESIEIINKTILS  438 (439)
T ss_dssp             CCCSSCCHHHHHHHHHHTTEECCBS-----------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ecCccHHHHHHHHHHHHCCeEEecC-----------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence            64   24567777765  8877653                       1388999999889999999999999988753

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.94  E-value=6e-26  Score=210.45  Aligned_cols=288  Identities=15%  Similarity=0.125  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC--EEEEcCCCChhhHHHHHHHhhCCcEEEEecc
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK--HIITVQTEHKSVLDSIRKLENDGFRVTYLKP  118 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~--~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~  118 (397)
                      +...+++++++++++.+  ..++++||++|+.+++.++.    .+++  +|+++.+.|++...........|.+++.++.
T Consensus        47 ~~~~~l~~~la~~~~~~--~~i~~~~G~~a~~~al~~~~----~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~  120 (357)
T 3lws_A           47 AIIEPFEQKFADVLGMD--DAVFFPSGTMAQQVALRIWS----DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA  120 (357)
T ss_dssp             TTHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEecCcHHHHHHHHHHHh----hcCCCcEEEecccceeeeeccchhhhccCcEEEEecC
Confidence            46788999999999986  45666889999999998887    5666  7888877776655422222233889988885


Q ss_pred             CCCCCCCHHHHHHHhcCCceEEEEecccCcc-ccccc---HHHHHHHHHhcCcEEEEecccccC------ccccccCccc
Q psy8850         119 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAVG------KIDINIQNYK  188 (397)
Q Consensus       119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t-G~~~~---l~~i~~l~~~~gi~livD~a~~~~------~~~~~~~~~~  188 (397)
                       +++.+|+++++++.  ++++|++++++||+ |.+.|   +++|+++|++||++||+|++|..+      ....++. ..
T Consensus       121 -~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~  196 (357)
T 3lws_A          121 -ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-GL  196 (357)
T ss_dssp             -TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-TT
T ss_pred             -CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-hc
Confidence             45679999999884  38999999999998 88887   788999999999999999998621      1111111 24


Q ss_pred             ccEEEecccccc-CCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         189 VDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       189 ~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      .|+++.|+||.+ |+.| |+++.+++..+.+........    ......+....+++ .+++.+    .+..+++.++++
T Consensus       197 ~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~l~~~----~~~~~~~~~~~~  266 (357)
T 3lws_A          197 FDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYG----GDLISLYPYIVSAD-YYYELR----KDRMGQYYEQAK  266 (357)
T ss_dssp             SSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT----CCCSCCHHHHHHHH-HHHHHH----TTCHHHHHHHHH
T ss_pred             CCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhc----CCcccchHHHHHHH-HHHHHH----HHHHHHHHHHHH
Confidence            688899999944 7776 888888765554432211000    00111222222222 344432    223344677788


Q ss_pred             HHHHHHhhhcCcEEEeC-CCCCCCCceEEEEecCC---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccc
Q psy8850         268 RLYNGLMESIEEIYING-DMNNRIPHNLNISFNFI---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDEL  341 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~  341 (397)
                      ++.+.|++ ++++.+.. ++.   ..++++.++..   +..++.+.|.  ||.+.+|..+.+                  
T Consensus       267 ~l~~~L~~-~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~------------------  324 (357)
T 3lws_A          267 QLAEQFNA-LPGVHTTPEVPV---SNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKD------------------  324 (357)
T ss_dssp             HHHHHHHT-STTEEEESSSCS---SSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECS------------------
T ss_pred             HHHHHHHh-CCCCeeccCCCc---ceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCC------------------
Confidence            99999998 88988753 332   45667777643   2456666665  999998853332                  


Q ss_pred             cCceEEEeeCCC---CCHHHHHHHHHHHHHHH
Q psy8850         342 AHSSIRFTIGRF---TTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       342 ~~~~iRi~~~~~---~~~~~i~~~~~~l~~~~  370 (397)
                      +..++|++++..   .+.+++++++++|.+++
T Consensus       325 ~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          325 GYCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             SEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             CceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            125899998743   57899999999888754

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.94  E-value=1.9e-25  Score=212.59  Aligned_cols=325  Identities=14%  Similarity=0.094  Sum_probs=214.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ..+|.+++++.+.+.... +... .+     ..+...++++.++++++.++++|++++||++|++.+++.+.. + .+++
T Consensus        59 ~~~p~v~~a~~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~-~-~~~~  129 (433)
T 1zod_A           59 HCHPEIVSVIGEYAGKLD-HLFS-EM-----LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKL-V-TGKY  129 (433)
T ss_dssp             BTCHHHHHHHHHHHHHCC-CCCT-TC-----CCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHH-H-HTCC
T ss_pred             CCCHHHHHHHHHHHHhCc-cccc-cc-----CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHH-h-hCCC
Confidence            358999999999987631 1111 11     124567888899999998778999999999999999986542 1 2357


Q ss_pred             EEEEcCCCChhhHHHHHHHhh---------CCcEEEEeccCCC------------CCCCHHHHHHHhc----CCceEEEE
Q psy8850          88 HIITVQTEHKSVLDSIRKLEN---------DGFRVTYLKPKNN------------GLITLSQLEEKIC----SDTILVSV  142 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~---------~g~~v~~v~~~~~------------~~~d~~~l~~~i~----~~~~~v~~  142 (397)
                      +|++.++.|++..........         ....+..++.+..            +.+|+++|+++++    +++++|++
T Consensus       130 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~  209 (433)
T 1zod_A          130 EIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIA  209 (433)
T ss_dssp             EEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred             eEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            899888888766544332210         0113444444311            1236899999987    46788888


Q ss_pred             ecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCCCCceEEEEec
Q psy8850         143 MLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRR  212 (397)
Q Consensus       143 ~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~  212 (397)
                      +.++|+||.+.+    +++|+++|++||+++|+|++|+ ++...    .+.....+|++  |++| +.++.++|++++++
T Consensus       210 ~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~~~~  287 (433)
T 1zod_A          210 EPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIVTSA  287 (433)
T ss_dssp             CSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEEECH
T ss_pred             ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccCCCCeeEEEEhH
Confidence            777788998766    8999999999999999999998 43221    12222346766  5559 54444589999987


Q ss_pred             CCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCC
Q psy8850         213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNR  289 (397)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~  289 (397)
                      +..+.+....    ....... ..+...+++..++++.+.+  ..+.+++.++++++++.|++.   ++.+......   
T Consensus       288 ~~~~~~~~~~----~~~~~t~-~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~---  357 (433)
T 1zod_A          288 AIEERAHELG----YLFYTTH-VSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGR---  357 (433)
T ss_dssp             HHHHHHHHTT----CCCCCTT-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE---
T ss_pred             HHHHhhccCC----CCCCCCC-CcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE---
Confidence            6554443310    0000112 2355556666678887655  345677777788888877661   2444333221   


Q ss_pred             CCceEEEEecC---------CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         290 IPHNLNISFNF---------IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       290 ~~~~~~~~~~~---------~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                       +.++.+.++.         ....++.+.+.  ||.+.+|..+.                   .++++||+++..+++++
T Consensus       358 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-------------------~~~~lRi~~~~~~t~~~  417 (433)
T 1zod_A          358 -GLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG-------------------MGGVFRIAPPLTVSEDE  417 (433)
T ss_dssp             -TTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTT-------------------SCCEEEECCCTTCCHHH
T ss_pred             -EEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCC-------------------CCCEEEEECCcCCCHHH
Confidence             4455666643         12456666665  88888764211                   13789999998899999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKVKKL  373 (397)
Q Consensus       359 i~~~~~~l~~~~~~~  373 (397)
                      +++++++|+++++++
T Consensus       418 i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          418 IDLGLSLLGQAIERA  432 (433)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988654

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.94  E-value=5.6e-26  Score=213.06  Aligned_cols=310  Identities=13%  Similarity=0.047  Sum_probs=200.6

Q ss_pred             CCCCHHHHHHHHHHH-hhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-C-----CCCCc--EEEeCChhHHHHHHHHH
Q psy8850           7 TPIDPRVVDKMIPYL-RVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-Y-----ADPRE--IIWTSGATESNNLAIKG   77 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~-----~~~~~--i~~~~g~t~a~~~~l~~   77 (397)
                      .++++.+.++.. .. .. .. ..  .|    ....+..++|+++++++ +     .++++  +++|+|+++|+.+++.+
T Consensus        46 ~~~~~~v~~a~~-~~~~~-~~-~~--~Y----~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~  116 (405)
T 3k7y_A           46 LHIFDSVLNADK-LVTEN-YK-EK--PY----LLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEF  116 (405)
T ss_dssp             BCCCHHHHHHHH-HHHHH-CC-CC--CC----CTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHH-HhcCC-CC-CC--CC----CCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHH
Confidence            345788888876 43 22 10 00  12    22234567777777776 2     13343  68999999999999998


Q ss_pred             hHhhhcc--CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-CC-CCCCCHHHHHHHhcC--CceEEEEecc-cCccc
Q psy8850          78 AAHFYKK--RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KN-NGLITLSQLEEKICS--DTILVSVMLV-NNEIG  150 (397)
Q Consensus        78 l~~~~~~--~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-~~-~~~~d~~~l~~~i~~--~~~~v~~~~~-~~~tG  150 (397)
                      +.    .  + |+|++++|+|+.+...++..   |.+++.+|+ ++ ++.+|++++++++++  +++++++..+ |||||
T Consensus       117 l~----~~~~-d~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG  188 (405)
T 3k7y_A          117 LK----MLNV-ETLYVTNPPYINHVNMIESR---GFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCS  188 (405)
T ss_dssp             HH----TTTC-CEEEEESSCCHHHHHHHHTT---TCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTC
T ss_pred             HH----hcCC-CEEEEeCCCCHhHHHHHHHc---CCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCC
Confidence            87    5  7 99999999999999888777   999999998 33 477999999999874  5678777654 89999


Q ss_pred             cccc---HHHHHHHHHhcCcEEEEecccccCcc--------cc-cc-CcccccEEEeccccccCCCC--ceEEEEe---c
Q psy8850         151 VIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--------DI-NI-QNYKVDLMSFSAHKIYGPKG--IGALYIR---R  212 (397)
Q Consensus       151 ~~~~---l~~i~~l~~~~gi~livD~a~~~~~~--------~~-~~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~---~  212 (397)
                      .+++   +++|+++|++||++||+|++|.....        +. .+ ......+++.|++|.++..|  +|++++.   +
T Consensus       189 ~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~  268 (405)
T 3k7y_A          189 VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQ  268 (405)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSH
T ss_pred             CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCH
Confidence            9998   56788999999999999999872211        00 01 11134688899999766445  7887652   2


Q ss_pred             CCCCccccccccCCccccccCCCCchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh----hhcCc---
Q psy8850         213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLM----ESIEE---  279 (397)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~---  279 (397)
                      +....+...+...   .+...+.++.....+...+++.      +.+.+..++++++++++.+.+.|+    + +..   
T Consensus       269 ~~~~~~~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~-~g~~~~  344 (405)
T 3k7y_A          269 EEKKIVFNNLCFI---VRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKK-YNLNYD  344 (405)
T ss_dssp             HHHHHHHHHHHHH---HHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-GTCCCC
T ss_pred             HHHHHHHHHHHHH---HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cCCCCC
Confidence            1221221111000   0011123344444344344432      234567778889999999999998    7 421   


Q ss_pred             EEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHH
Q psy8850         280 IYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK  357 (397)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~  357 (397)
                      +.+..+.+   +.++++.++   . ++...|.  ||.+.+|                         +  ||+++. .+++
T Consensus       345 ~~~~~p~g---g~f~~~~l~---~-~~~~~L~~~gV~v~p~-------------------------~--Ris~a~-~~~~  389 (405)
T 3k7y_A          345 WNVYKKQR---GLFSFVPLL---A-KIAEHLKTHHIYIINN-------------------------G--RINVSG-ITKN  389 (405)
T ss_dssp             GGGGSSCC---SSEEECGGG---G-GGTTTTTTTTEECCTT-------------------------S--EEEGGG-CCTT
T ss_pred             CccccCCc---eEEEecCCC---H-HHHHHHHHCCEeecCC-------------------------C--eEEEec-cCHH
Confidence            33333322   223333333   2 2223333  6766654                         2  999975 4689


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8850         358 EIDFTIKLLKMKVKK  372 (397)
Q Consensus       358 ~i~~~~~~l~~~~~~  372 (397)
                      +|++++++|++++++
T Consensus       390 ~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          390 NVDYIADKICLSLSQ  404 (405)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998864

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.94  E-value=3e-26  Score=220.25  Aligned_cols=337  Identities=17%  Similarity=0.154  Sum_probs=208.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      +|+.+..++ +++++++.+.+..  +.  . .|.    ......+++++++++++.+  ++++|+|||+|+.++++++. 
T Consensus        44 lD~~~~~~~-~~v~~a~~~~l~~--~~--~-~y~----~~~~~~~l~~~la~~~~~~--~v~~t~~gt~A~~~al~~~~-  110 (467)
T 2oqx_A           44 IDLLTDSGT-GAVTQSMQAAMMR--GD--E-AYS----GSRSYYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLI-  110 (467)
T ss_dssp             EECSCCSSC-SCCCHHHHHHTTS--CC--C-CSS----SCHHHHHHHHHHHHHHCCS--EEEEEC--CCSHHHHHHHHH-
T ss_pred             EecccCCCc-HHHHHHHHHHhcc--Cc--c-eec----cCchhHHHHHHHHHHhCcC--cEEEcCCcHHHHHHHHHHHh-
Confidence            355555555 7888888877643  10  1 121    1235678899999999874  89999999999999999887 


Q ss_pred             hhccC-----C----CEEEEcCCCChhhHHHHHHHhhCCcEEEEe------ccC----CCCCCCHHHHHHHhcC----Cc
Q psy8850          81 FYKKR-----G----KHIITVQTEHKSVLDSIRKLENDGFRVTYL------KPK----NNGLITLSQLEEKICS----DT  137 (397)
Q Consensus        81 ~~~~~-----g----~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v------~~~----~~~~~d~~~l~~~i~~----~~  137 (397)
                         ++     |    |+|+++ ..|..........  .|..+...      +.+    .++.+|+++|++++++    ++
T Consensus       111 ---~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~  184 (467)
T 2oqx_A          111 ---KKREQEKGLDRSKMVAFS-NYFFDTTQGHSQI--NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNV  184 (467)
T ss_dssp             ---HHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHH--TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGC
T ss_pred             ---ccccccCCCCccceEEec-ccccccchhhhhc--cCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCce
Confidence               34     6    888877 4554433332222  25555443      222    3467899999999984    79


Q ss_pred             eEEEEecccCcc-ccccc---HHHHHHHHHhcCcEEEEeccccc-----------CccccccCc------ccccEEEecc
Q psy8850         138 ILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAV-----------GKIDINIQN------YKVDLMSFSA  196 (397)
Q Consensus       138 ~~v~~~~~~~~t-G~~~~---l~~i~~l~~~~gi~livD~a~~~-----------~~~~~~~~~------~~~d~~~~s~  196 (397)
                      ++|++++++||+ |.+++   +++|+++|++||++||+|+++++           +....+...      ...|++++|+
T Consensus       185 ~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~  264 (467)
T 2oqx_A          185 PYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSA  264 (467)
T ss_dssp             CCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEES
T ss_pred             eEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEec
Confidence            999999999998 77766   67999999999999999977654           111111111      1468889999


Q ss_pred             ccccCCC-CceEEEEecC-CCC---cccccc-ccCCccccccCCCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy8850         197 HKIYGPK-GIGALYIRRN-PRT---RIEAQI-HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEM-KEELKRILFLQKRL  269 (397)
Q Consensus       197 ~K~~g~~-g~g~~~~~~~-~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~-~~~~~~~~~~~~~l  269 (397)
                      ||.+|.+ | |+++.+++ ..+   .+.+.. .++.   ....++.+...+.++..+++.   .+ +...++..++++++
T Consensus       265 sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~al~~~l~~---~~~~~~~~~~~~~~~~l  337 (467)
T 2oqx_A          265 KKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEG---FPTYGGLEGGAMERLAVGLYD---GMNLDWLAYRIAQVQYL  337 (467)
T ss_dssp             SSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTS---SCCCCCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCC---cccccchhhhHHHHHHHhhHh---hhhHHHHHHHHHHHHHH
Confidence            9965643 4 77777654 222   222221 1111   112233333333333332221   11 23445567788899


Q ss_pred             HHHHhhhcCcEEEeCCCCCCCCceEEEEec----CCC-----hHHHHHHh-C--CcEecccCccCCCCCChhhHHHhhCC
Q psy8850         270 YNGLMESIEEIYINGDMNNRIPHNLNISFN----FIE-----GESLLMAI-K--DIAVSSGSACTSASLEPSYVLRALGC  337 (397)
Q Consensus       270 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~l-~--~i~~~~g~~~~~~~~~~~~~~~~~g~  337 (397)
                      .+.|++ + ++.+. +..   +..+++.++    +.+     ..++...| .  ||.+.++..|..+.. +     ..|.
T Consensus       338 ~~~L~~-~-~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~-~-----~~g~  405 (467)
T 2oqx_A          338 VDGLEE-I-GVVCQ-QAG---GHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRD-P-----KTGK  405 (467)
T ss_dssp             HHHHHH-T-TCCEE-EEC---SSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC-T-----TTCS
T ss_pred             HHHHHH-C-CCeee-cCC---ceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccccccccccc-c-----cccc
Confidence            999988 5 66655 322   345566663    233     23346666 4  898887543211000 0     0011


Q ss_pred             CccccCceEEEeeCCC-CCHHHHHHHHHHHHHHHHHHHh
Q psy8850         338 NDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       338 ~~~~~~~~iRi~~~~~-~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ......++||++++.. +++++|++++++|++++++.++
T Consensus       406 ~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~~  444 (467)
T 2oqx_A          406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN  444 (467)
T ss_dssp             BCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred             cccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence            1112247899999988 8999999999999999887654

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.94  E-value=1.8e-26  Score=216.48  Aligned_cols=280  Identities=14%  Similarity=0.115  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHhCC------CCCcEEEeCChhHHHHHHHHHhHhhhccCCC----EEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          44 EKARNEVAQLIYA------DPREIIWTSGATESNNLAIKGAAHFYKKRGK----HIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        44 ~~~~~~la~~~~~------~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~----~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      .++++.++++++.      ++++|++|+|+++|+.+++.++.    ++||    +|++++|+|+++...+...   |.++
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~----~~Gd~~~~~Vlv~~P~y~~~~~~~~~~---g~~~  143 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS----SLARSQPVSVVAAAPFYSTYVEETTYV---RSGM  143 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH----HTSSSSSEEEEECSSCCTHHHHHHHTT---CBTT
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc----CCCCCCcceEEEcCCCchhHHHHHHHc---CCeE
Confidence            6788888888772      33589999999999999999988    7899    9999999999998877766   8888


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc-ccccCcccccEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-DINIQNYKVDLM  192 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~-~~~~~~~~~d~~  192 (397)
                      +.++.+.++ ++        .+++++|++++++||||.+++  +|++.+++++++||+|++|..+.. ++.. ..+.+++
T Consensus       144 ~~~~~d~~~-l~--------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~  211 (391)
T 3bwn_A          144 YKWEGDAWG-FD--------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIM  211 (391)
T ss_dssp             EEEEEESTT-CC--------CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCC-CBCCSEE
T ss_pred             EEecCCHHH-cC--------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEE
Confidence            888876443 22        257899999999999999987  454422233499999999985322 2221 3367899


Q ss_pred             EeccccccCCCC--ceEEEE-ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHH----------HHHHHHHH
Q psy8850         193 SFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA----------RIEMKEEL  259 (397)
Q Consensus       193 ~~s~~K~~g~~g--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~----------~~~~~~~~  259 (397)
                      +.|+||.+|++|  +|++++ +++....+.....       ....+.+.....++..+++..          .+++++.+
T Consensus       212 ~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~  284 (391)
T 3bwn_A          212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYII-------VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGR  284 (391)
T ss_dssp             EEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHH-------HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHH
T ss_pred             EEechhhcCCCccceEEEEecCHHHHHHHHHHhc-------ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHH
Confidence            999999877666  599888 5554444433221       111234555555555677653          23578889


Q ss_pred             HHHHHHHHHHHHHHhhhcCcEEEeCCCCC----------CCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCC
Q psy8850         260 KRILFLQKRLYNGLMESIEEIYINGDMNN----------RIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLE  327 (397)
Q Consensus       260 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~  327 (397)
                      ++++++++++.+.|++ ++++.+..+.+.          ..+.++++.++..  ..+...+.  ||.+.+|..|..    
T Consensus       285 ~~~~~~~~~l~~~L~~-~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~--~~~~~~l~~~gV~v~pg~~fg~----  357 (391)
T 3bwn_A          285 EMMKNRWEKLREVVKE-SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE--TDLVSELRRHKVMSRAGERCGS----  357 (391)
T ss_dssp             HHHHHHHHHHHHHHHT-CSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS--CCHHHHHHHTTEECEEGGGGTC----
T ss_pred             HHHHHHHHHHHHHHHh-CCCcccccCCccccccccccCCCcceEEEecCCcH--HHHHHHHHHCCEEEccCCCCCC----
Confidence            9999999999999999 777766543221          1122456666532  23444443  999999976532    


Q ss_pred             hhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       328 ~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                                    ..+++||+++.  +++++++++++|++++++
T Consensus       358 --------------~~~~iRis~~~--~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          358 --------------DKKHVRVSMLS--REDVFNVFLERLANMKLI  386 (391)
T ss_dssp             --------------CTTEEEEESCS--CHHHHHHHHHHHHSCC--
T ss_pred             --------------CCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence                          13789999994  899999999999887644

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.94  E-value=1.3e-24  Score=208.21  Aligned_cols=323  Identities=14%  Similarity=0.089  Sum_probs=212.4

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|.|++++.+++......     +.......+...+++++++++++.+.++|++++||++|++.+++.+...+.   
T Consensus        65 G~~~p~v~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g  139 (459)
T 4a6r_A           65 GYGRKDFAEAARRQMEELPFY-----NTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQG  139 (459)
T ss_dssp             CBCCHHHHHHHHHHHHHCSCC-----CTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHhcccc-----ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence            456899999999998763210     111112234677899999999988778999999999999999998773211   


Q ss_pred             -cCCCEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCC-----CCCCC--------HHHHHHHhc----C
Q psy8850          84 -KRGKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKN-----NGLIT--------LSQLEEKIC----S  135 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~-----~~~~d--------~~~l~~~i~----~  135 (397)
                       .++++|++.++.|+++......+...          ...+..++...     +. +|        +++|++++.    +
T Consensus       140 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~  218 (459)
T 4a6r_A          140 KPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGAD  218 (459)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             CCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCC
Confidence             14689999999998877655544211          11334444321     11 34        788998886    4


Q ss_pred             CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CC
Q psy8850         136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KG  204 (397)
Q Consensus       136 ~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g  204 (397)
                      ++++|+++.+++++|.+.+    +++|.++|++||++||+|++|+ ++...    .+.....+|++++|  | +.|+ .+
T Consensus       219 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~~~  296 (459)
T 4a6r_A          219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGYLP  296 (459)
T ss_dssp             GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTSSC
T ss_pred             CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehh--hhhcCCCCC
Confidence            6788888888888888877    8999999999999999999987 32221    12223357888765  9 5553 46


Q ss_pred             ceEEEEecCCCCccc---cccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----Hhhh
Q psy8850         205 IGALYIRRNPRTRIE---AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL-FLQKRLYNG----LMES  276 (397)
Q Consensus       205 ~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~-~~~~~l~~~----l~~~  276 (397)
                      +|+++++++..+.+.   ....+      ... ..+...+++..++++.+.+  +.+.++++ ++.+++++.    |.+ 
T Consensus       297 lg~v~~~~~i~~~~~~~~~~~~~------~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~-  366 (459)
T 4a6r_A          297 IGAVFVGKRVAEGLIAGGDFNHG------FTY-SGHPVCAAVAHANVAALRD--EGIVQRVKDDIGPYMQKRWRETFSR-  366 (459)
T ss_dssp             CEEEEECHHHHHHHHHHCTTHHH------HHH-CSCHHHHHHHHHHHHHHHH--TCHHHHHHHTHHHHHHHHHHHHHTT-
T ss_pred             ccceeeCHHHHHHhhcCCCcccC------CCC-CCCHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            899999876655544   21111      112 2334455555577876654  23344444 444444444    444 


Q ss_pred             cCcEEEeCCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCcccc
Q psy8850         277 IEEIYINGDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELA  342 (397)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~  342 (397)
                      ++.+......    +.++.+.+....            ..++...+.  |+.+.++                        
T Consensus       367 ~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------------------------  418 (459)
T 4a6r_A          367 FEHVDDVRGV----GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC------------------------  418 (459)
T ss_dssp             CTTEEEEEEE----TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE------------------------
T ss_pred             CCCeEEEEEE----EEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC------------------------
Confidence            4555444322    345556654211            344555554  7777654                        


Q ss_pred             CceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         343 HSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       343 ~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ++++||+++...+++++++++++|+++++++.+
T Consensus       419 g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  451 (459)
T 4a6r_A          419 GDHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ  451 (459)
T ss_dssp             TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            178999999889999999999999999988764

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.94  E-value=4.2e-25  Score=210.87  Aligned_cols=324  Identities=14%  Similarity=0.113  Sum_probs=215.2

Q ss_pred             CCCCHHHH-H-HHHH---HHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           7 TPIDPRVV-D-KMIP---YLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         7 ~~~~~~v~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++.+|.|+ + ++.+   ++....   +. ..  . ...+...++++.++++++ .++++|++++||++|++.+++.+..
T Consensus        69 G~~~p~v~~~~A~~~~~~~~~~~~---~~-~~--~-~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~  141 (449)
T 2cjg_A           69 GMNPPALVDDREFHAELMQAALNK---PS-NS--D-VYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFD  141 (449)
T ss_dssp             CBSCHHHHTCHHHHHHHHHHHTCC---CC-TT--T-CCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcC---CC-Cc--c-cCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHH
Confidence            34689999 9 9999   655421   11 10  1 123456788889999997 5667899999999999999986543


Q ss_pred             hhcc----------CCCEEEEcCCCChhhHHHHHHHh------hCCc-----EEEEeccCC--CC--------CCCHHHH
Q psy8850          81 FYKK----------RGKHIITVQTEHKSVLDSIRKLE------NDGF-----RVTYLKPKN--NG--------LITLSQL  129 (397)
Q Consensus        81 ~~~~----------~g~~vl~~~~~~~s~~~~~~~~~------~~g~-----~v~~v~~~~--~~--------~~d~~~l  129 (397)
                      ...+          ++++|++.++.|+++......+.      +.+.     .+..+|.++  ..        ..++++|
T Consensus       142 ~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l  221 (449)
T 2cjg_A          142 WKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQA  221 (449)
T ss_dssp             HHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHH
Confidence            2211          27899999998887554321111      1122     566677654  11        2456679


Q ss_pred             HHHhc---CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEeccc
Q psy8850         130 EEKIC---SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAH  197 (397)
Q Consensus       130 ~~~i~---~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~  197 (397)
                      +++++   +++++|++++++|++|.+.+    +++|.++|++||+++|+|++|+ ++..    ..+.....+|++++|  
T Consensus       222 e~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--  299 (449)
T 2cjg_A          222 RAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFG--  299 (449)
T ss_dssp             HHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--
T ss_pred             HHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEec--
Confidence            98885   67899999988899997666    8999999999999999999998 3321    112222356877554  


Q ss_pred             cccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q psy8850         198 KIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES-  276 (397)
Q Consensus       198 K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~-  276 (397)
                      |.+ +  +|+++++++..+.+.+....... ... ....|...+++..++++.+.+  +.+.+++.++++++++.|++. 
T Consensus       300 K~l-~--iG~~~~~~~~~~~l~~~~~~~~~-~~~-t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~  372 (449)
T 2cjg_A          300 KKT-Q--VCGVMAGRRVDEVADNVFAVPSR-LNS-TWGGNLTDMVRARRILEVIEA--EGLFERAVQHGKYLRARLDELA  372 (449)
T ss_dssp             GGG-S--SEEEEECGGGGGSTTCTTTSTTS-SCC-SSSSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccc-c--EEEEEECHHHhhhhhhcccCCcc-ccc-CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHH
Confidence            954 3  79999987665543331111000 111 223455666666688887655  456778888888888888761 


Q ss_pred             --cCc-EEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850         277 --IEE-IYINGDMNNRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI  350 (397)
Q Consensus       277 --~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  350 (397)
                        ++. +......    +.++.+.++.. ...++.+.|.  ||.+.++.                       .++||+++
T Consensus       373 ~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----------------------~~~iRi~~  425 (449)
T 2cjg_A          373 ADFPAVVLDPRGR----GLMCAFSLPTTADRDELIRQLWQRAVIVLPAG-----------------------ADTVRFRP  425 (449)
T ss_dssp             HHSTTTSEEEEEE----TTEEEEECSSHHHHHHHHHHHHHTTEECEEET-----------------------TTEEEECC
T ss_pred             hhCCCceeeEeec----cEEEEEEECChHHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEEC
Confidence              343 4333221    44666666531 2456666664  78777641                       27899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         351 GRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       351 ~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +..++++++++++++|+++++++
T Consensus       426 ~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          426 PLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            98899999999999999988654

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.94  E-value=2.2e-24  Score=207.07  Aligned_cols=330  Identities=12%  Similarity=0.126  Sum_probs=217.9

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|.|++++.+++.......     .. ....+...++.++++++++.+.+.++|++||++|++.+++.+...+.   
T Consensus        69 Gh~~p~v~~A~~~~l~~~~~~~-----~~-~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g  142 (476)
T 3i5t_A           69 GYGRREIVDAMAHQAMVLPYAS-----PW-YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLG  142 (476)
T ss_dssp             CBCCHHHHHHHHHHHHHCCCCC-----TT-TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHhccCcc-----cC-ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence            4568999999999987632110     10 12234677889999999987777999999999999999998764321   


Q ss_pred             -cCCCEEEEcCCCChhhHHHHHHHhhC----------CcEEEEeccCC--CC-CCC--------HHHHHHHhc----CCc
Q psy8850          84 -KRGKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKN--NG-LIT--------LSQLEEKIC----SDT  137 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~~~~~~~~~~~----------g~~v~~v~~~~--~~-~~d--------~~~l~~~i~----~~~  137 (397)
                       .++++|++..+.|++.......+...          ...+..++...  .+ ..+        +++|++++.    +++
T Consensus       143 ~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~  222 (476)
T 3i5t_A          143 RPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTI  222 (476)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGE
T ss_pred             CCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCE
Confidence             12468888888888776554443210          11233344321  11 112        788998886    567


Q ss_pred             eEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccc-cCcccccEEEecccc-ccCC-CCc
Q psy8850         138 ILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DIN-IQNYKVDLMSFSAHK-IYGP-KGI  205 (397)
Q Consensus       138 ~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~-~~~~~~d~~~~s~~K-~~g~-~g~  205 (397)
                      ++|+++.+++++|.+.+    +++|.++|++||++||+|++|+ +|..    ... .....+|++++|  | +.|+ .++
T Consensus       223 aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G~~pl  300 (476)
T 3i5t_A          223 AAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA--KGVTSGYVPL  300 (476)
T ss_dssp             EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTTSSCC
T ss_pred             EEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhh--hhhcCCCcCe
Confidence            89999999999998666    8999999999999999999997 3221    122 333457888766  9 6554 468


Q ss_pred             eEEEEecCCCCcccccccc-CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CcEE
Q psy8850         206 GALYIRRNPRTRIEAQIHG-GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI---EEIY  281 (397)
Q Consensus       206 g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~  281 (397)
                      |+++++++..+.+.+.... ......... ..+...+++..++++.+.+  +.+.+++.++.+++++.|++ +   +.+.
T Consensus       301 g~v~~~~~i~~~~~~~~~~~~~~~~~~t~-~~np~a~aAa~aaL~~~~~--~~~~~~~~~~~~~l~~~L~~-l~~~~~v~  376 (476)
T 3i5t_A          301 GGLAISEAVLARISGENAKGSWFTNGYTY-SNQPVACAAALANIELMER--EGIVDQAREMADYFAAALAS-LRDLPGVA  376 (476)
T ss_dssp             EEEEECHHHHHTTSGGGCTTCEECCCCTT-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHT-TTTSTTEE
T ss_pred             EEEEECHHHHHHHhcCCcccccccccCCC-CcCHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHH-HhcCCCeE
Confidence            9999987665555432100 000011122 3344556666678887654  45677788888888888875 4   3343


Q ss_pred             EeCCCCCCCCceEEEEecCCC------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         282 INGDMNNRIPHNLNISFNFIE------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      .+...    +.++.+.+....            ...+...+.  |+.+.+.                        ++++|
T Consensus       377 ~v~~~----G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------------------------g~~iR  428 (476)
T 3i5t_A          377 ETRSV----GLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL------------------------GDLCV  428 (476)
T ss_dssp             EEEEE----TTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE------------------------TTEEE
T ss_pred             EEEec----CceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec------------------------CCEEE
Confidence            33221    345556665321            234444444  6666542                        27899


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      |+++..++++++++++++|+++++++.+.
T Consensus       429 i~p~l~~t~e~i~~~l~~l~~~l~~~~~~  457 (476)
T 3i5t_A          429 ISPPLIISRAQIDEMVAIMRQAITEVSAA  457 (476)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99998899999999999999999888764

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.94  E-value=1.6e-25  Score=217.73  Aligned_cols=292  Identities=13%  Similarity=0.057  Sum_probs=193.7

Q ss_pred             CCcEEEeCChhHHHHHHHHHhH-hhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC--CCCCHHHHHHHhc
Q psy8850          58 PREIIWTSGATESNNLAIKGAA-HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKIC  134 (397)
Q Consensus        58 ~~~i~~~~g~t~a~~~~l~~l~-~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~  134 (397)
                      +++|++|+|+++|+.+++.++. ..+.++||+|++++|.|+.+...... ...|.+++.++.+++  +.+|+++|++++.
T Consensus       165 ~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~  243 (546)
T 2zy4_A          165 SVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPEL-AQYALEEVAINADPSLNWQYPDSELDKLKD  243 (546)
T ss_dssp             GEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHS-TTSCCEEEEEECBGGGTTBCCHHHHGGGGS
T ss_pred             cceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHH-cCCCcEEEEEecCcccCCCCCHHHHHHhhC
Confidence            4689999999999999998742 11227899999999999999876543 334789999988743  4689999999888


Q ss_pred             CCceEEEEecccCccccccc---HHHHHHHH--HhcCcEEEEecccccCcc-ccccCc--ccccEEEeccccccCCCC--
Q psy8850         135 SDTILVSVMLVNNEIGVIQP---ILEIGELC--RSKGVIFHCDAAQAVGKI-DINIQN--YKVDLMSFSAHKIYGPKG--  204 (397)
Q Consensus       135 ~~~~~v~~~~~~~~tG~~~~---l~~i~~l~--~~~gi~livD~a~~~~~~-~~~~~~--~~~d~~~~s~~K~~g~~g--  204 (397)
                      +++++|++++++||||.+++   +++|+++|  +++|++||+|++|+.... +.++..  .+.++++.|++|.+|.+|  
T Consensus       244 ~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlR  323 (546)
T 2zy4_A          244 PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWR  323 (546)
T ss_dssp             TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGC
T ss_pred             CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcc
Confidence            88999999999999999998   45678888  789999999999984321 111111  146789999999777556  


Q ss_pred             ceEEEEecC-CCCcccccc------------ccC-----------------CccccccCCCCchhHHHHHH--HHHHHH-
Q psy8850         205 IGALYIRRN-PRTRIEAQI------------HGG-----------------GHEYGLRSGTLATHQIVGMG--EAFRLA-  251 (397)
Q Consensus       205 ~g~~~~~~~-~~~~~~~~~------------~~~-----------------~~~~~~~~~~~~~~~~~~l~--~al~~~-  251 (397)
                      +|+++++++ ..+.+....            ...                 .........+.+.....++.  +...++ 
T Consensus       324 iG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~  403 (546)
T 2zy4_A          324 LGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD  403 (546)
T ss_dssp             EEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh
Confidence            799999875 333321100            000                 00000111223333333221  111222 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-----------------CChHH-HHHHhC
Q psy8850         252 --RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGES-LLMAIK  311 (397)
Q Consensus       252 --~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~l~  311 (397)
                        ..+.++.++.++++++.+.+.|..   ++.+..+   ..+.++++.++.                 .++.+ +...+.
T Consensus       404 ~~~~~~~~~r~~~~~r~~~l~~~L~~---~~~~~~~---~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~  477 (546)
T 2zy4_A          404 EADEYKHTLKQLIRRRETTLYRELGM---PPLRDEN---AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIAD  477 (546)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHGGGTS---SCCCCTT---BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCC---CcccCCC---CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHH
Confidence              234566777788888887777742   2221111   113445666542                 12223 344443


Q ss_pred             --CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         312 --DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       312 --~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                        ||.+.+|..|..                  ..+++||+++. .+++++++++++|+++++++.+
T Consensus       478 ~~gV~v~pG~~F~~------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~  524 (546)
T 2zy4_A          478 ETGIVLLPGRGFGS------------------NRPSGRASLAN-LNEYEYAAIGRALRKMADELYA  524 (546)
T ss_dssp             HHSCCCEESSCTTC------------------SSCEEEEESSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCEEEeCccccCC------------------CCCeEEEEecc-CCHHHHHHHHHHHHHHHHHHHH
Confidence              999999987653                  13789999984 6799999999999999888775

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.94  E-value=2.5e-25  Score=206.37  Aligned_cols=291  Identities=16%  Similarity=0.146  Sum_probs=194.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE--EEEcCCCChhhHHHHHHHhhCCcEEEEec
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH--IITVQTEHKSVLDSIRKLENDGFRVTYLK  117 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~--vl~~~~~~~s~~~~~~~~~~~g~~v~~v~  117 (397)
                      .+...+++++++++++.+.  .++++||++|+.+++.++.    .++++  |+++.+.|.+...........|.+++.+|
T Consensus        47 ~~~~~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~~----~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~  120 (359)
T 3pj0_A           47 GAVIEDFETKIAKILGKQS--AVFFPSGTMAQQIALRIWA----DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLG  120 (359)
T ss_dssp             SHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECS
T ss_pred             CHHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHH----hcCCCcEEEEeccceeeehhcchHHHhcCceEEecC
Confidence            3567899999999999874  4666899999999999887    45565  66666655544322111111289999998


Q ss_pred             cCCCCCCCHHHHHHHhcCCceEEEEecccCcc-cccccHHH---HHHHHHhcCcEEEEecccccCccc------cccCcc
Q psy8850         118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQPILE---IGELCRSKGVIFHCDAAQAVGKID------INIQNY  187 (397)
Q Consensus       118 ~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~t-G~~~~l~~---i~~l~~~~gi~livD~a~~~~~~~------~~~~~~  187 (397)
                      . +++.+|+++++++ .+++++|++++++||+ |.++|.++   |.++|++||++||+|+++..+...      .++. .
T Consensus       121 ~-~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~  197 (359)
T 3pj0_A          121 T-ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC-A  197 (359)
T ss_dssp             C-TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH-T
T ss_pred             C-cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh-c
Confidence            7 4577999999998 7889999999999998 78888655   499999999999999998644321      1111 2


Q ss_pred             cccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         188 KVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       188 ~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      +.|+++.|+|| +.++.| |+++.+++..+.+.......    .......+....+++ .+++..    .+..+++.+++
T Consensus       198 ~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~a~~-~~l~~~----~~~~~~~~~~~  267 (359)
T 3pj0_A          198 LFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRY----GGDLISLYPYILSAD-YYFEKR----IGKMAEYFEAA  267 (359)
T ss_dssp             TCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHT----TCCCSCCHHHHHHHH-HHHHHH----GGGHHHHHHHH
T ss_pred             cCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHh----CCCcchhHHHHHHHH-HHHHHH----HHHhHHHHHHH
Confidence            57899999999 566655 78777776655554321100    000111222222222 333322    23445677888


Q ss_pred             HHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccc
Q psy8850         267 KRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDEL  341 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~  341 (397)
                      +++.+.|++ ++++.+...+..  .+++++.++..   +..++.+.|.  ||.+.+|..+..                 .
T Consensus       268 ~~l~~~L~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~-----------------~  327 (359)
T 3pj0_A          268 KGLAERFNS-CSGVKTVPEVPV--SNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS-----------------A  327 (359)
T ss_dssp             HHHHHHHHT-STTEEEESSSCS--SSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE-----------------T
T ss_pred             HHHHHHHhh-CCCceeeccCCc--ceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC-----------------C
Confidence            999999998 889887532221  45666777532   2456666665  999998854331                 1


Q ss_pred             cCceEEEeeCCC---CCHHHHHHHHHHHHHH
Q psy8850         342 AHSSIRFTIGRF---TTEKEIDFTIKLLKMK  369 (397)
Q Consensus       342 ~~~~iRi~~~~~---~~~~~i~~~~~~l~~~  369 (397)
                      +..++|++++..   .+.+++++++++|.+.
T Consensus       328 ~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          328 DVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             TEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             CceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            136899988633   5788898888888764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.93  E-value=1.7e-23  Score=199.83  Aligned_cols=324  Identities=14%  Similarity=0.078  Sum_probs=206.1

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      +..+|.|++++.+++.....      +.......+...+++++|+++++.+ .++++|++||++|++.+++.+...  .+
T Consensus        79 Gh~~p~v~~A~~~~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~--~g  150 (453)
T 4ffc_A           79 GASHPAVAAAIADQATHFTH------TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA--TG  150 (453)
T ss_dssp             CTTCHHHHHHHHHHHHHCSC------CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH--HC
T ss_pred             CCCCHHHHHHHHHHHHhccc------cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh--cC
Confidence            35689999999999876321      1111122356678999999999854 468999999999999999865422  24


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhC------C-----cEEEEeccCC----CCCCC--------HHHHHHHhcC-CceEEE
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLEND------G-----FRVTYLKPKN----NGLIT--------LSQLEEKICS-DTILVS  141 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~------g-----~~v~~v~~~~----~~~~d--------~~~l~~~i~~-~~~~v~  141 (397)
                      +++|++.++.|++.......+...      +     ..+..+|.+.    ...++        ++.|++.+.. ++++|+
T Consensus       151 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi  230 (453)
T 4ffc_A          151 RPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAII  230 (453)
T ss_dssp             CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred             CCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            578888888888776655544210      1     1455565541    11122        4667776654 456777


Q ss_pred             EecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCceEEEEe
Q psy8850         142 VMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIR  211 (397)
Q Consensus       142 ~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~  211 (397)
                      ++.+++.+|.+.+    +++|+++|++||++||+|++|+ ++..    ..+.....+|++++|  | +.++.++|+++++
T Consensus       231 ~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~  308 (453)
T 4ffc_A          231 IEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMA--KGIAGGMPLSAVTGR  308 (453)
T ss_dssp             ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEE
T ss_pred             EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhh--hhhcCCcCeEEEEEC
Confidence            7766666677766    8999999999999999999987 3221    112222356777655  9 5444458999998


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCC
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNN  288 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~  288 (397)
                      ++..+.+.+...+      ... ..+...+++..++++.+.+  +.+.++++++.+++++.|.+.   ++.+......  
T Consensus       309 ~~i~~~~~~~~~~------~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--  377 (453)
T 4ffc_A          309 AELMDAVYAGGLG------GTY-GGNPVTCAAAVAALGVMRE--LDLPARARAIEASVTSRLSALAEEVDIIGEVRGR--  377 (453)
T ss_dssp             HHHHTTSCTTSSC------CSS-SSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEE--
T ss_pred             HHHHhhhcccCcC------CCC-CcCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee--
Confidence            7766655543222      112 2344555555577776654  234444555555555544431   4554433221  


Q ss_pred             CCCceEEEEecC-----C---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         289 RIPHNLNISFNF-----I---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       289 ~~~~~~~~~~~~-----~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                        +.++.+.+..     .   ...++...+.  ||.+.++..                     .++.+||+++..+++++
T Consensus       378 --g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~~~~~~t~e~  434 (453)
T 4ffc_A          378 --GAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT---------------------FGNVIRLLPPLVIGDDL  434 (453)
T ss_dssp             --TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT---------------------TSCEEEECCCTTCCHHH
T ss_pred             --ceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC---------------------CCCEEEEECCCCCCHHH
Confidence              3466666632     1   1344555554  888876521                     12789999999899999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKVKKLR  374 (397)
Q Consensus       359 i~~~~~~l~~~~~~~~  374 (397)
                      +++++++|+++++++.
T Consensus       435 i~~~l~~l~~~l~~~~  450 (453)
T 4ffc_A          435 LDEGITALSDIIRAKA  450 (453)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.93  E-value=3.8e-24  Score=200.30  Aligned_cols=283  Identities=12%  Similarity=0.082  Sum_probs=194.4

Q ss_pred             HHHHHHHHHHHhh-ccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEE--eCChhHHHHHHHHHhHhhhccCCC
Q psy8850          11 PRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus        11 ~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~--~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      .+|++++.+.... ...++.. .|.++..   ...++++.+++++|.+. .+++  ++||++|+.+++.+++    ++||
T Consensus        32 ~~vl~a~~~~~~~~~~~~~~~-~~~y~~~---~~~~Le~~lA~l~g~e~-alv~p~~~sGt~Ai~~al~all----~~GD  102 (409)
T 3jzl_A           32 AKVLDAFQENKVSDFHFHPST-GYGYDDE---GRDTLERVYATVFKTEA-ALVRPQIISGTHAISTVLFGIL----RPDD  102 (409)
T ss_dssp             HHHHHHHHHTTCCGGGGCCCC-TTCTTCH---HHHHHHHHHHHHHTCSE-EEEETTSCSHHHHHHHHHHHHC----CTTC
T ss_pred             HHHHHHHHHhhhhhhccCCCc-CCCCChh---HHHHHHHHHHHHhCCCc-EEEECCCccHHHHHHHHHHHhc----CCCC
Confidence            3566777665422 1223333 4544433   47789999999999873 3443  8899999999999887    8999


Q ss_pred             EEEEcC-CCChhhHHHH-------HHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEec----ccCcccccccH
Q psy8850          88 HIITVQ-TEHKSVLDSI-------RKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVML----VNNEIGVIQPI  155 (397)
Q Consensus        88 ~vl~~~-~~~~s~~~~~-------~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~----~~~~tG~~~~l  155 (397)
                      +|+++. +.|.++...+       ..+...|.+++.++.++++.+|++++++++++++++|++++    ++||+|.+.|+
T Consensus       103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l  182 (409)
T 3jzl_A          103 ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKI  182 (409)
T ss_dssp             EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHH
T ss_pred             EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccH
Confidence            999998 9899887655       23444599999999988899999999999999999999999    99999999999


Q ss_pred             HHHHHHHHh--cCcEEEEecccccCccccccCcccccEEEeccccccCCCC---ceEEEEecCCCCccccccccCCcccc
Q psy8850         156 LEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       156 ~~i~~l~~~--~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      ++|+++|++  ||+++++|++|+.+....+....++|++++|+||.+|+.+   .|++++++++.+.+........  .+
T Consensus       183 ~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~--~g  260 (409)
T 3jzl_A          183 KEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPG--IG  260 (409)
T ss_dssp             HHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTT--TG
T ss_pred             HHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccc--cc
Confidence            999999999  9999999999986653333344579999999999544322   4999998766665544221100  00


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC-CCCceEEEEecCC-ChHHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNFI-EGESLLM  308 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~  308 (397)
                      ...+. ......++...++    ..+.+.++..+++.++.+.|++ + ++.+...+.. ....++.+.+.+. ...++.+
T Consensus       261 ~~~g~-~~~~~~~~l~gl~----~~~~r~~~~~~~a~~la~~L~~-~-g~~v~p~~~~~~~~~i~~i~l~~~~~~~~~~~  333 (409)
T 3jzl_A          261 REAGA-SLYSLLEMYQGFF----LAPHVTAQAIKGARFTAAMLAE-F-GVEADPVWDAPRTDLIQSVSFHNKEKMVAFAQ  333 (409)
T ss_dssp             GGCCC-CTTCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-T-TCEEESCTTSCCSSSCCEEECSCHHHHHHHHH
T ss_pred             ccccc-cHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCCCCCccEEEEEEeCCHHHHHHHHH
Confidence            11111 1111122222332    2355677888899999999998 5 5566433221 2223666776532 1234555


Q ss_pred             HhC
Q psy8850         309 AIK  311 (397)
Q Consensus       309 ~l~  311 (397)
                      .|+
T Consensus       334 ~L~  336 (409)
T 3jzl_A          334 AIQ  336 (409)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.93  E-value=2.6e-24  Score=204.81  Aligned_cols=314  Identities=13%  Similarity=0.121  Sum_probs=202.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ..+|.|++++.+++.....   . .+     ..+...++++.++++++ .++++++++||++|++.+++.+...  .+++
T Consensus        71 ~~~p~v~~a~~~~~~~~~~---~-~~-----~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~--~~~~  138 (434)
T 3l44_A           71 HAHPHITKAITTAAENGVL---Y-GT-----PTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAY--TGRT  138 (434)
T ss_dssp             BTCHHHHHHHHHHHHHCSC---C-SS-----CCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHH--HCCC
T ss_pred             CCCHHHHHHHHHHHHhCcC---C-CC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHh--hCCC
Confidence            4689999999999876211   0 11     12356778889999987 5678999999999999999976521  2668


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCc-----------------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccC
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGF-----------------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNN  147 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~-----------------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~  147 (397)
                      +|++.++.|++...........+.                 .+..+|.+     |+++|+++++   +++++|+++++++
T Consensus       139 ~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~  213 (434)
T 3l44_A          139 KIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWGHEVAAILVEPIVG  213 (434)
T ss_dssp             EEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSSBC
T ss_pred             EEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCCCCEEEEEEcCCCC
Confidence            999998888775533222110010                 22333332     8999999987   4678888888888


Q ss_pred             ccccccc----HHHHHHHHHhcCcEEEEecccccC---cc-ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850         148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAVG---KI-DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI  218 (397)
Q Consensus       148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~---~~-~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~  218 (397)
                      ++|.+.|    +++|.++|++||++||+|++|+..   .. ..+.....+|++++|  | +.++.++|+++++++..+.+
T Consensus       214 ~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~iG~~~~~~~i~~~~  291 (434)
T 3l44_A          214 NFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLTALG--KVIGGGLPIGAYGGKKEIMEQV  291 (434)
T ss_dssp             TTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHTTB
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCeeehh--hhhcCCcCeeeEEEcHHHHHhh
Confidence            8898887    999999999999999999999732   11 111222346776655  9 55555689998887765555


Q ss_pred             ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEE
Q psy8850         219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLN  295 (397)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~  295 (397)
                      .+...   . ........+...+++..++++.+.+  +++.+++.++++++++.|++.   ++.......    .+.++.
T Consensus       292 ~~~~~---~-~~~~t~~~~~~a~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~  361 (434)
T 3l44_A          292 APLGP---A-YQAGTMAGNPASMASGIACLEVLQQ--EGLYEKLDELGATLEKGILEQAAKHNIDITLNR----LKGALT  361 (434)
T ss_dssp             TTTSS---B-CCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE----ETTEEE
T ss_pred             ccCCC---c-ccCCCCCcCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe----eccEEE
Confidence            43100   0 0011123455555666677776643  445566666666666666551   232222211    145666


Q ss_pred             EEecCCC--------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHH
Q psy8850         296 ISFNFIE--------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI  359 (397)
Q Consensus       296 ~~~~~~~--------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i  359 (397)
                      +.+....              ..++...|.  ||.+.++.                       ...+|+++  .++++++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~rl~~--~~t~e~i  416 (434)
T 3l44_A          362 VYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK-----------------------YEAWFLTT--EHTKEDI  416 (434)
T ss_dssp             EEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSST-----------------------TCCEECCT--TCCHHHH
T ss_pred             EEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecC-----------------------CCcEEEec--ccCHHHH
Confidence            6663211              134555554  78777652                       14678864  4799999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy8850         360 DFTIKLLKMKVKKLRE  375 (397)
Q Consensus       360 ~~~~~~l~~~~~~~~~  375 (397)
                      ++++++|+++++++++
T Consensus       417 ~~~l~~l~~~l~~~~~  432 (434)
T 3l44_A          417 EYTIEAVGRAFAALAD  432 (434)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988764

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.93  E-value=1.1e-24  Score=205.85  Aligned_cols=283  Identities=13%  Similarity=0.060  Sum_probs=191.1

Q ss_pred             HHHHHHHHHHHHh-CCC-----CCcEE--EeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          42 AIEKARNEVAQLI-YAD-----PREII--WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        42 ~~~~~~~~la~~~-~~~-----~~~i~--~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      ...++++.+++++ +..     +++|.  .+.|+++|+.++... ...+.++||+|+++.|+|+++...+...   |.++
T Consensus        80 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~-~~~~~~~gd~Vlv~~p~y~~~~~~~~~~---g~~~  155 (409)
T 4eu1_A           80 GIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDL-LNRFVANCNRIYGPDVGYPNHESIFAKA---GMEL  155 (409)
T ss_dssp             CCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHH-GGGTSSSCCEEEEESSCCTHHHHHHHHT---TCEE
T ss_pred             CcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHH-HHHhcCCCCEEEEeCCCcHhHHHHHHHc---CCeE
Confidence            4567888888876 654     56774  499999999887553 2233378899999999999998888777   9999


Q ss_pred             EEeccC--CCCCCCHHHHHHHhc---CCceEEEEecccCcccccccH---HHHHHHHHhcCcEEEEecccccCccc----
Q psy8850         114 TYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKID----  181 (397)
Q Consensus       114 ~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~l---~~i~~l~~~~gi~livD~a~~~~~~~----  181 (397)
                      +.+|.+  +++.+|+++++++++   ++++++++++++||||.+++.   ++|+++|++||+++|+|++|+.....    
T Consensus       156 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~  235 (409)
T 4eu1_A          156 TPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDY  235 (409)
T ss_dssp             EEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHH
T ss_pred             EEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCccc
Confidence            999983  457899999999996   356777889999999999995   55999999999999999998733211    


Q ss_pred             ----c-cc-CcccccEEEeccccccCCCC--ceEE--EEec-C----CCCccccccccCCccccccCCCCchhHHHHHHH
Q psy8850         182 ----I-NI-QNYKVDLMSFSAHKIYGPKG--IGAL--YIRR-N----PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGE  246 (397)
Q Consensus       182 ----~-~~-~~~~~d~~~~s~~K~~g~~g--~g~~--~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  246 (397)
                          + .+ ......+++.|++|.+|..|  +|++  ++.+ +    ....+.....       .....++.....+...
T Consensus       236 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~  308 (409)
T 4eu1_A          236 DAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIR-------PMYNNPPLYGAWVVSS  308 (409)
T ss_dssp             HTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHH-------HHHSSCCHHHHHHHHH
T ss_pred             chHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHh-------hhcCCCChHHHHHHHH
Confidence                1 11 11234578899999777555  6776  4443 2    2222221110       1112334444444545


Q ss_pred             HHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCc---EEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850         247 AFRLA------RIEMKEELKRILFLQKRLYNGLMESIEE---IYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV  315 (397)
Q Consensus       247 al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~  315 (397)
                      +++..      .+.+++.++++.++++++.+.|++ ++.   +.+..+..   +.+++   .+.+...+...+.  ||.+
T Consensus       309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~---~~~~~---~~~~~~~~~~ll~~~gv~v  381 (409)
T 4eu1_A          309 ILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKA-CGSVHDWSHIERQV---GMMAY---TGLTREQVELLRSEYHIYM  381 (409)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCSCCHHHHHSC---SSEEE---CCCCHHHHHHHHHHHCEEC
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcceecCCc---eEEEE---eCCCHHHHHHHHHcCCEEE
Confidence            55532      345778889999999999999988 421   33333322   22222   2334433333332  7877


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .+|                           .||+++. .+++++++++++|++++
T Consensus       382 ~p~---------------------------~Ri~~~~-~~~~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          382 TLN---------------------------GRAAVSG-LNSTNVEYVSQAIHNVT  408 (409)
T ss_dssp             CTT---------------------------CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred             cCC---------------------------CEEEEEe-cCHhhHHHHHHHHHHHh
Confidence            653                           3888875 46677999999998765

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.93  E-value=1.9e-23  Score=199.48  Aligned_cols=322  Identities=13%  Similarity=0.069  Sum_probs=204.5

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      +..+|.+++++.+++.... .     +.......+...+++++++++++.. .++++|++||++|++.+++.+...  .+
T Consensus        76 Gh~~p~v~~A~~~~~~~~~-~-----~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~--~g  147 (451)
T 3oks_A           76 GNSAPKVVEAVRSQVGDFT-H-----TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH--TH  147 (451)
T ss_dssp             CTTCHHHHHHHHHHHTTCS-C-----CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHH--HC
T ss_pred             CCCCHHHHHHHHHHHHhcc-c-----ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHh--cC
Confidence            3468999999999987632 1     1111122345678899999998754 468999999999999999876522  24


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhC-----------CcEEEEeccCCC------C-------CCCHHHHHHHhc-----CC
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLEND-----------GFRVTYLKPKNN------G-------LITLSQLEEKIC-----SD  136 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~-----------g~~v~~v~~~~~------~-------~~d~~~l~~~i~-----~~  136 (397)
                      +++|++.++.|++.......+...           ...+..+|.+..      |       ..+++.+++.+.     ++
T Consensus       148 ~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~  227 (451)
T 3oks_A          148 KPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADN  227 (451)
T ss_dssp             CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGG
T ss_pred             CCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCC
Confidence            578888888888776555444110           114566665411      0       012444444443     35


Q ss_pred             ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCCCCce
Q psy8850         137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGPKGIG  206 (397)
Q Consensus       137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g  206 (397)
                      +++|+++.+++.+|.+.+    +++|.++|++||++||+|++|+ ++..    ..+.....+|++++  +| +.++..+|
T Consensus       228 ~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~--sK~l~~G~~iG  305 (451)
T 3oks_A          228 LAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVT--AKGIAGGLPLS  305 (451)
T ss_dssp             EEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCE
T ss_pred             EEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeee--hhhhhCCcceE
Confidence            678888877777788776    8999999999999999999997 3221    12222235677755  49 54444589


Q ss_pred             EEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEe
Q psy8850         207 ALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYIN  283 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~  283 (397)
                      +++++++..+.+.+...+      ... ..+...+++..++++.+.+  .++.++++++.+++++.|.+.   ++.+...
T Consensus       306 ~v~~~~~~~~~~~~~~~~------~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  376 (451)
T 3oks_A          306 AVTGRAEIMDSPHVSGLG------GTY-GGNPIACAAALATIETIES--EGLVARAQQIEKIMKDRLGRLQAEDDRIGDV  376 (451)
T ss_dssp             EEEEEHHHHTCSCTTSBC------CSS-SSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             EEEECHHHHhhhcCCCcC------CCC-CCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence            999987766655443222      112 3344555555577877654  244455555555555555441   4554433


Q ss_pred             CCCCCCCCceEEEEecC-----C---ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC
Q psy8850         284 GDMNNRIPHNLNISFNF-----I---EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF  353 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~~~-----~---~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~  353 (397)
                      ...    +.++.+.+..     .   ...++...+.  ||.+.++..                     .++.+||+++..
T Consensus       377 ~~~----G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~~iRi~~~~~  431 (451)
T 3oks_A          377 RGR----GAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGT---------------------YGNVVRFLPPLS  431 (451)
T ss_dssp             EEE----TTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECT---------------------TSCEEEECCCTT
T ss_pred             EEe----eEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCC---------------------CCCEEEEECCCC
Confidence            221    3466666632     1   1344555554  888776521                     127899999988


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q psy8850         354 TTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       354 ~~~~~i~~~~~~l~~~~~~  372 (397)
                      ++++++++++++|++++++
T Consensus       432 ~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          432 IGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             CCHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            9999999999999998753

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.93  E-value=4e-24  Score=200.77  Aligned_cols=283  Identities=15%  Similarity=0.064  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHHh-hccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEE--eCChhHHHHHHHHHhHhhhccCCC
Q psy8850          11 PRVVDKMIPYLR-VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus        11 ~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~--~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      +.|++++.+... ....++.. .|.++..   ...++++.+++++|.+.. +++  ++||++|+.+++.+++    ++||
T Consensus        46 ~~Vl~A~~~~~~~~~~~~~~~-gy~y~~~---~~~~Le~~lA~l~g~e~a-lv~p~~~sGt~Ai~~al~all----~pGD  116 (427)
T 3i16_A           46 LKVLNAFQEERISEAHFTNSS-GYGYGDI---GRDSLDAVYARVFNTESA-LVRPHFVNGTHALGAALFGNL----RPGN  116 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCC-TTCTTCH---HHHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHHC----CTTC
T ss_pred             HHHHHHHHHhchhHHhcCCCC-CCCCCHH---HHHHHHHHHHHHhCCcce-EEeCCCccHHHHHHHHHHHHh----CCCC
Confidence            456666666532 12223333 4554433   377889999999998743 444  7899999999999887    8999


Q ss_pred             EEEEcC-CCChhhHHHH--------HHHhhCCcEEEEeccCCCCCCCHHHHHHHhc--CCceEEEEec----ccCccccc
Q psy8850          88 HIITVQ-TEHKSVLDSI--------RKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVML----VNNEIGVI  152 (397)
Q Consensus        88 ~vl~~~-~~~~s~~~~~--------~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~----~~~~tG~~  152 (397)
                      +|++++ +.|+++...+        ..+...|.+++.++.+++|.+|+++++++++  +++++|++++    ++||+|.+
T Consensus       117 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i  196 (427)
T 3i16_A          117 TMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLI  196 (427)
T ss_dssp             EEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCH
T ss_pred             EEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccH
Confidence            999998 9999887655        3344459999999998888999999999998  7899999999    99999999


Q ss_pred             ccHHHHHHHHHh--cCcEEEEecccccCccccccCcccccEEEeccccccCC---CCceEEEEecCCCCccccccccCCc
Q psy8850         153 QPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGP---KGIGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       153 ~~l~~i~~l~~~--~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~g~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                      .|+++|+++|++  +|+++++|++|+.+....+....++|++++|+||.+|+   ...|++++++++.+.+........ 
T Consensus       197 ~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~-  275 (427)
T 3i16_A          197 EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPG-  275 (427)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT-
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCc-
Confidence            999999999999  99999999999876533333345789999999995443   235999998776666544221100 


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC-CCCceEEEEecCCC-hHH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNFIE-GES  305 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~  305 (397)
                       .+... .+.......+...++    ....+.++..+++.++.+.|++ + ++.+...+.. ....++.|.+.+.+ ..+
T Consensus       276 -~g~~~-~~~~~~a~~~l~gl~----~~~~r~~~~~~~a~~la~~L~~-~-g~~V~p~~~~~~~~~i~~i~l~~~~~~~~  347 (427)
T 3i16_A          276 -IGGEC-GSTFGVVRSMYQGLF----LAPHISMEALKGAILCSRIMEL-A-GFEVMPKYDEKRSDIIQSIKFNDKDKLIE  347 (427)
T ss_dssp             -TGGGC-CCCTTCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-T-TCEEESCTTSCCSSSCEEEECSSHHHHHH
T ss_pred             -cCccC-CccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCCCCCccEEEEEEECCHHHHHH
Confidence             00001 111110111112222    2356778888999999999998 5 4455433221 11226667765321 234


Q ss_pred             HHHHhC
Q psy8850         306 LLMAIK  311 (397)
Q Consensus       306 ~~~~l~  311 (397)
                      +.+.|+
T Consensus       348 f~~~l~  353 (427)
T 3i16_A          348 FCKGIQ  353 (427)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            455554

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.93  E-value=5.1e-26  Score=215.55  Aligned_cols=279  Identities=13%  Similarity=0.084  Sum_probs=197.5

Q ss_pred             HHHHHHHHHHHhC------CCCCcEEEeCChhHHHHHHHHHh--------HhhhccCCCEEEEcCCCChhhHHHHHHHhh
Q psy8850          43 IEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGA--------AHFYKKRGKHIITVQTEHKSVLDSIRKLEN  108 (397)
Q Consensus        43 ~~~~~~~la~~~~------~~~~~i~~~~g~t~a~~~~l~~l--------~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~  108 (397)
                      ..++++.++++++      +++++|++|+|+++|+.+++.++        .    ++||+|+++.|+|+.+...+...  
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~~~--  175 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPD----APESKVVAHAPFYPVFREQTKYF--  175 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTT----SCCEEEEECSSCCHHHHHHHHHS--
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccC----CCCCEEEEeCCCcccHHHHHHHc--
Confidence            4667777777775      57789999999999999999998        6    78999999999999998888776  


Q ss_pred             CCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccc-cccCcc
Q psy8850         109 DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID-INIQNY  187 (397)
Q Consensus       109 ~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~-~~~~~~  187 (397)
                       |.+++..      .+|+++|++++++++++|++++|+||||.+++ +    +++  ++..+.|+++.....+ .++. .
T Consensus       176 -g~~~~~~------~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~-~  240 (427)
T 2hox_A          176 -DKKGYVW------AGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYK-A  240 (427)
T ss_dssp             -CBTTEEE------EEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSC-B
T ss_pred             -CCeeeee------cCCHHHHHHhhcCCceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccC-C
Confidence             7766533      35788999988888999999999999999999 4    233  5678889876532211 1221 3


Q ss_pred             cccEEEeccccccCCCC--ceEEEEe-cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHH-----------H
Q psy8850         188 KVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-----------I  253 (397)
Q Consensus       188 ~~d~~~~s~~K~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-----------~  253 (397)
                      +.+++++|+||.+|.+|  +|+++++ ++....+......      ...+. +.....++..+++...           +
T Consensus       241 ~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~------~~~~~-~~~~q~a~~~~L~~~~~~l~~~~~~~~~  313 (427)
T 2hox_A          241 DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK------NTEGT-PRETQLRSLKVLKEVVAMVKTQKGTMRD  313 (427)
T ss_dssp             CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHH------HTSSC-CHHHHHHHHHHHHHHHHHHHHHTTSTTS
T ss_pred             CceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHh------cCCCC-CHHHHHHHHHHhhcchhhhccccchhHH
Confidence            67999999999777666  7999995 5555544433211      11223 3333333335555322           2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcEEE--eC-CC--------CCCCCceEEEEecCCChHHHHHHh---CCcEecccC
Q psy8850         254 EMKEELKRILFLQKRLYNGLMESIEEIYI--NG-DM--------NNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGS  319 (397)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~  319 (397)
                      .+.+.+++++++++++.+.|++ ++++.+  .. +.        ....+.++++.++. +..++...+   .||.+.+|.
T Consensus       314 ~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~  391 (427)
T 2hox_A          314 LNTFGFKKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGV  391 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCC
Confidence            3556778899999999999998 777765  11 11        01124556677764 334444443   399999987


Q ss_pred             ccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      .|..                  ..++||||++.  +++++++++++|+++++
T Consensus       392 ~f~~------------------~~~~~Ris~~~--~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          392 GFEA------------------SSRYVRLSLIK--TQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             GGTS------------------CTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred             ccCC------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            5532                  13889999995  88999999999998864

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.92  E-value=9.5e-24  Score=201.95  Aligned_cols=318  Identities=14%  Similarity=0.087  Sum_probs=197.0

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      +.++.+++++.+.+....   .   +  + ...+...++.++++++++ .++++++++||++|+++++++.. .+.+ ++
T Consensus        73 ~~~~~v~~a~~~~~~~~~---~---~--~-~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar-~~~~-~~  140 (453)
T 2cy8_A           73 HGHPRVNAAIAEALSHGV---Q---Y--A-ASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVAR-AFTG-RR  140 (453)
T ss_dssp             BTCHHHHHHHHHHHTTTC---S---S--C-SSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHH-HHHC-CC
T ss_pred             CCCHHHHHHHHHHHHhCC---C---C--C-CCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHH-HhhC-CC
Confidence            468999999999986511   1   1  1 123466778888888876 56789999999999999999721 1114 46


Q ss_pred             EEEEcCCCChhhHHHHHHHh-h-------CCc------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCccc
Q psy8850          88 HIITVQTEHKSVLDSIRKLE-N-------DGF------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIG  150 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~-~-------~g~------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG  150 (397)
                      +|++.++.|+++........ .       .|.      .+..++.     .|+++|+++++   +++++|+++++++++|
T Consensus       141 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG  215 (453)
T 2cy8_A          141 MILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFG  215 (453)
T ss_dssp             EEEEECC----------------------------CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHH
T ss_pred             EEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCC
Confidence            78888888876554332210 0       132      2333443     38999999987   4778888888888899


Q ss_pred             cccc----HHHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccc
Q psy8850         151 VIQP----ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ  221 (397)
Q Consensus       151 ~~~~----l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~  221 (397)
                      .+.|    +++|.++|++||++||+|++|+....    ..+.....+|++  |++| +.++.++|+++++++..+.+...
T Consensus       216 ~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~  293 (453)
T 2cy8_A          216 VTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVLSRG  293 (453)
T ss_dssp             TEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTSSSC
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHhccc
Confidence            9887    99999999999999999999982211    111112246776  5559 54434589999987655554431


Q ss_pred             cccCCccccccCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEE
Q psy8850         222 IHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNIS  297 (397)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~  297 (397)
                      ..+. . ........+...+++..++++. + .  +++.+++.++++++++.|++.   ++....... .   +.++++.
T Consensus       294 ~~~~-~-~~~~t~~~n~~~~aa~~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~---g~~~~i~  364 (453)
T 2cy8_A          294 SDRK-V-LHQGTFTGNPITAAAAIAAIDTIL-E--DDVCAKINDLGQFAREAMNHLFARKGLNWLAYG-R---FSGFHLM  364 (453)
T ss_dssp             C-----------CCCCHHHHHHHHHHHHHHH-H--TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEC-C---TTEEEEE
T ss_pred             cCCC-c-eeCCCCCCCHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-e---eeEEEEE
Confidence            0000 0 0011123455556666677876 5 2  456677788888888888761   132221211 1   4567777


Q ss_pred             ecC-----C------------C---hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850         298 FNF-----I------------E---GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT  355 (397)
Q Consensus       298 ~~~-----~------------~---~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  355 (397)
                      ++.     .            +   ..++...|.  ||.+.++                         +.+|++  ..++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~-------------------------~~~~l~--~~~t  417 (453)
T 2cy8_A          365 PGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR-------------------------GSVFLS--AQHE  417 (453)
T ss_dssp             ETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT-------------------------TEEECC--TTCC
T ss_pred             EeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC-------------------------CCEEee--ccCC
Confidence            763     1            1   345655554  7766321                         235654  5679


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCccc
Q psy8850         356 EKEIDFTIKLLKMKVKKLRELSPLW  380 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~~~~~~~~~~~  380 (397)
                      ++++++++++|+++++++++....+
T Consensus       418 ~~~i~~~l~~l~~~l~~~~~~~~~~  442 (453)
T 2cy8_A          418 REHVEHLVTTFDRVLDRLADENLLS  442 (453)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999887754444

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.92  E-value=8.2e-25  Score=207.80  Aligned_cols=311  Identities=14%  Similarity=0.070  Sum_probs=198.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ..+|.+++++.+++....      .+  ++ ..+...+++++++++++ +++++++++||++|++.+++.... + .+++
T Consensus        68 ~~~p~v~~a~~~~~~~~~------~~--~~-~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~-~-~~~~  135 (427)
T 3fq8_A           68 HAHPEVIEALKVAMEKGT------SF--GA-PCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRA-Y-TGRD  135 (427)
T ss_dssp             BTCHHHHHHHHHHHTTCS------CC--SS-CCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHH-H-HCCC
T ss_pred             CCCHHHHHHHHHHHHhCC------Cc--CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHH-h-hCCC
Confidence            358999999999987621      11  11 23567788999999997 567899999999999999964332 2 2347


Q ss_pred             EEEEcCCCChhhHHHHHHHhh-----------CCc------EEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccC
Q psy8850          88 HIITVQTEHKSVLDSIRKLEN-----------DGF------RVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNN  147 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~-----------~g~------~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~  147 (397)
                      +|++.++.|++..........           .|+      .+..+|.+     |+++|++++++   ++++|+++++++
T Consensus       136 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~~  210 (427)
T 3fq8_A          136 KIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVG  210 (427)
T ss_dssp             EEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSBC
T ss_pred             EEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCcC
Confidence            788877777654322111100           011      23444443     89999999976   788999999999


Q ss_pred             ccccccc----HHHHHHHHHhcCcEEEEecccccC---c-cccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850         148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAVG---K-IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI  218 (397)
Q Consensus       148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~---~-~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~  218 (397)
                      ++|.+.+    +++|.++|++||++||+|++|+..   . ...+.....+|++++|  | +.++..+|+++++++..+.+
T Consensus       211 ~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~~G~~~~~~~~~~~~  288 (427)
T 3fq8_A          211 NSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREIMQLV  288 (427)
T ss_dssp             TTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEEC--GGGGTTSSCEEEEECHHHHTTB
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChhhhh--hhhhCCcceEEEEEcHHHHHhh
Confidence            9999999    999999999999999999999822   1 1112222346776555  9 44333489999987765555


Q ss_pred             ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEE
Q psy8850         219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLN  295 (397)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~  295 (397)
                      .+....    ......+.+...+++..++++.+.+  +.+.++++++.+++++.|.+.   ++......    ..+.++.
T Consensus       289 ~~~~~~----~~~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~  358 (427)
T 3fq8_A          289 APAGPM----YQAGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLLAIAQETGHAACGG----QVSGMFG  358 (427)
T ss_dssp             TTTSSB----CCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EETTEEE
T ss_pred             ccCCCc----cccCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE----EeeeEEE
Confidence            432100    0011112355666666677776543  345566666666666666551   11111111    1144556


Q ss_pred             EEecCCC--------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHH
Q psy8850         296 ISFNFIE--------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI  359 (397)
Q Consensus       296 ~~~~~~~--------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i  359 (397)
                      +.+....              ..++...+.  |+.+.++.                         ..|++++..++++++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~-------------------------~~r~~~~~~~t~e~i  413 (427)
T 3fq8_A          359 FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ-------------------------FEAGFTSLAHTEEDI  413 (427)
T ss_dssp             EESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-------------------------TSCEECCTTCCHHHH
T ss_pred             EEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCC-------------------------CCCEEeeCcCCHHHH
Confidence            6654321              234555554  77777652                         115556666899999


Q ss_pred             HHHHHHHHHHHHH
Q psy8850         360 DFTIKLLKMKVKK  372 (397)
Q Consensus       360 ~~~~~~l~~~~~~  372 (397)
                      ++++++|++++++
T Consensus       414 ~~~l~~l~~~l~~  426 (427)
T 3fq8_A          414 DATLAAARTVMSA  426 (427)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.92  E-value=4.9e-24  Score=202.83  Aligned_cols=311  Identities=14%  Similarity=0.076  Sum_probs=203.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ..++.+.+++.+.+....   .. .+     ..+...++++.++++++ ..+++++++||++|+++++++.. .+ .+++
T Consensus        72 ~~~~~v~~a~~~~~~~~~---~~-~~-----~~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar-~~-~~~~  139 (434)
T 2epj_A           72 HKHPRVLEAVEEALARGW---LY-GA-----PGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLAR-GY-TGRD  139 (434)
T ss_dssp             BTCHHHHHHHHHHHHTCS---CC-SS-----CCHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHH-HH-HCCC
T ss_pred             CCCHHHHHHHHHHHHhCC---CC-CC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHH-Hh-hCCC
Confidence            468999999999987621   11 11     23456779999999995 45689999999999999998632 11 2456


Q ss_pred             EEEEcCCCChhhHHHHHHH-----------hhCCc------EEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccC
Q psy8850          88 HIITVQTEHKSVLDSIRKL-----------ENDGF------RVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNN  147 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~-----------~~~g~------~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~  147 (397)
                      +|++.++.|++........           ...|.      .+..+|.+     |+++|++++++   ++++|+++++++
T Consensus       140 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~  214 (434)
T 2epj_A          140 LILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEYGDRIAGVIVEPVIA  214 (434)
T ss_dssp             EEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBC
T ss_pred             eEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence            7777778777644321100           00132      34555543     89999999873   788888888888


Q ss_pred             ccccccc----HHHHHHHHHhcCcEEEEecccccCcc-c---cccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850         148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKI-D---INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI  218 (397)
Q Consensus       148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~-~---~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~  218 (397)
                      ++|.+.|    +++|.++|++||+++|+|++|+.... .   .+.....+|++  |++| +.++..+|+++++++..+.+
T Consensus       215 ~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l  292 (434)
T 2epj_A          215 NAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSREVMSLL  292 (434)
T ss_dssp             SSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTB
T ss_pred             CCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecHHHHHhh
Confidence            8999888    99999999999999999999982111 1   11112347776  5559 54433479999987655554


Q ss_pred             ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CcEEEeCCCCCCCCceE
Q psy8850         219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI----EEIYINGDMNNRIPHNL  294 (397)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~  294 (397)
                      .+..   .... ......+...+++..++++.+.+  +++.++++++++++++.|++ +    +.......    .+.++
T Consensus       293 ~~~~---~~~~-~~t~~~~~~~~aa~~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~----~g~~~  361 (434)
T 2epj_A          293 TPQG---KVFN-AGTFNAHPITMAAGLATLKALEE--EPVYSVSREAAKALEEAASE-VLDRTGLPYTINR----VESMM  361 (434)
T ss_dssp             TTTS---SBCC-CCTTTTCHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHH-HHHHHTCCEEEEE----ETTEE
T ss_pred             ccCC---Cccc-CCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HHhhCCCcEEEEE----eeeEE
Confidence            4311   0000 11113455566666678887654  45677788888888888876 3    22111111    14567


Q ss_pred             EEEecCC--------------ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         295 NISFNFI--------------EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       295 ~~~~~~~--------------~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      .+.++..              ...++...|.  ||.+.++.                       ...+|++  ..+++++
T Consensus       362 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~~~--~~~t~e~  416 (434)
T 2epj_A          362 QLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSN-----------------------LEAVFTG--LPHQGEA  416 (434)
T ss_dssp             EEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-----------------------TSCEECC--TTCSHHH
T ss_pred             EEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccC-----------------------CCcEEEe--ccCCHHH
Confidence            7777641              1345666654  88887652                       0234554  5679999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKVKKL  373 (397)
Q Consensus       359 i~~~~~~l~~~~~~~  373 (397)
                      +++++++|+++++++
T Consensus       417 i~~~l~~l~~~l~~~  431 (434)
T 2epj_A          417 LEIAVEGLRSSLKTV  431 (434)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998765

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.92  E-value=2.9e-24  Score=201.43  Aligned_cols=327  Identities=13%  Similarity=0.072  Sum_probs=210.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh-C--CCCCc--EEEeCChhHHHHHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-Y--ADPRE--IIWTSGATESNNLAIK   76 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~--~~~~~--i~~~~g~t~a~~~~l~   76 (397)
                      |..+.++..+.|++|.+.......      .+  +|....+..++++++++++ |  .+.+.  .+.|.|+|.|+..++.
T Consensus        56 d~~g~~~vl~~Vk~A~~~~~~~~~------~~--~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~  127 (420)
T 4h51_A           56 DEQGRPYPLRVVRKAEQLLLDMNL------DY--EYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAK  127 (420)
T ss_dssp             CTTSCBCCCHHHHHHHHHHHHTTC------CC--CCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCCC------CC--CCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHH
Confidence            334455667899999877765411      11  1223346778888888875 3  22222  4558899999998888


Q ss_pred             HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcE-EEEeccC--CCCCCCHHHHHHHhc---CCceEEEEecccCccc
Q psy8850          77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVNNEIG  150 (397)
Q Consensus        77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~-v~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG  150 (397)
                      .+...+.++||+|++++|+|+++...+...   |.+ +...+..  .++.+|.+.+.+.+.   +++++++...+|||||
T Consensus       128 ~l~~~~~~pgd~V~ip~P~w~~y~~i~~~a---G~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG  204 (420)
T 4h51_A          128 LLTRVFDAETTPIYLSDPTWPNHYGVVKAA---GWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTG  204 (420)
T ss_dssp             HHTTTSCTTTSCEEEEESCCTHHHHHHHHT---TCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTC
T ss_pred             HHHHhcCCCCCEEEEecCCchhHHHHHHHc---CCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCC
Confidence            777666689999999999999999888887   775 4444432  455678888887764   5778889999999999


Q ss_pred             cccc---HHHHHHHHHhcCcEEEEecccccCc---ccccc-------CcccccEEEeccccccCCCC--ceEEEEecCCC
Q psy8850         151 VIQP---ILEIGELCRSKGVIFHCDAAQAVGK---IDINI-------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPR  215 (397)
Q Consensus       151 ~~~~---l~~i~~l~~~~gi~livD~a~~~~~---~~~~~-------~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~  215 (397)
                      ..++   +++|+++|++++++++.|++|....   ...+.       ......+++.|++|.++..|  +|++++..+..
T Consensus       205 ~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~  284 (420)
T 4h51_A          205 VDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDK  284 (420)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCH
T ss_pred             CCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCH
Confidence            9988   5788999999999999999986221   11110       11134578899999666555  89988876544


Q ss_pred             CccccccccCCccccccCCCCchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---EEEeCCC
Q psy8850         216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE---IYINGDM  286 (397)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~  286 (397)
                      ..............+...+.++..+.......+.      .+.+.++.++++++++++.|.+.|++ +..   +..+.++
T Consensus       285 ~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~-~g~~~~~~~i~~q  363 (420)
T 4h51_A          285 TKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLR-LQTPGSWEHVINQ  363 (420)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCCTHHHHC
T ss_pred             HHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCeecCC
Confidence            4322211100000111223344444333333332      23445778889999999999999988 321   1111222


Q ss_pred             CCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHH
Q psy8850         287 NNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK  364 (397)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  364 (397)
                          .+++  .+-+.+.++ ++.|+  +|.+.++                         +  |||+.. .++++|+++++
T Consensus       364 ----~GmF--~~~gls~e~-v~~L~e~~Vy~~~~-------------------------g--Ris~Ag-l~~~ni~~~a~  408 (420)
T 4h51_A          364 ----IGMF--SFLGLSKAQ-CEYCQNHNIFITVS-------------------------G--RANMAG-LTHETALMLAQ  408 (420)
T ss_dssp             ----CSSE--EECCCCHHH-HHHHHHTTEECCTT-------------------------C--EEEGGG-CCHHHHHHHHH
T ss_pred             ----CceE--EecCcCHHH-HHHHHhCCEEEcCC-------------------------C--EEEecc-CCHHHHHHHHH
Confidence                2333  333455544 34554  6766543                         2  999975 57999999999


Q ss_pred             HHHHHHHHHHh
Q psy8850         365 LLKMKVKKLRE  375 (397)
Q Consensus       365 ~l~~~~~~~~~  375 (397)
                      +|.++++++.+
T Consensus       409 aI~~vvr~i~r  419 (420)
T 4h51_A          409 TINDAVRNVNR  419 (420)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHhhc
Confidence            99999988765

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.92  E-value=6.3e-23  Score=192.62  Aligned_cols=270  Identities=14%  Similarity=0.066  Sum_probs=185.2

Q ss_pred             HHHHHHHHHHHhhcc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEE--eCChhHHHHHHHHHhHhhhccCCC
Q psy8850          11 PRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus        11 ~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~--~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      +.|++++.+...... ..... .|.++..   ...++++.+++++|.+. .+++  ++||++|+.+++.+++    ++||
T Consensus        47 ~~Vl~a~~~~~~~~~~~~~~~-gy~Y~~~---g~~~Le~~lA~l~g~e~-alv~p~~~sGt~A~~~al~all----~pGD  117 (427)
T 3hvy_A           47 LKVLKAFQEERISESHFTNSS-GYGYNDI---GRDSLDRVYANIFNTES-AFVRPHFVNGTHAIGAALFGNL----RPND  117 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCCCC-TTCTTCH---HHHHHHHHHHHHHTCSE-EEEETTCCSHHHHHHHHHHHTC----CTTC
T ss_pred             HHHHHHHHHHHHHHHhcccCc-CCCCCch---hHHHHHHHHHHHhCCCc-eEEeCCCCcHHHHHHHHHHHhc----CCCC
Confidence            456666665533211 11122 4444333   37889999999999873 2443  7899999999999988    8999


Q ss_pred             EEEEcC-CCChhhHHHH--------HHHhhCCcEEEEeccCCCCCCCHHHHHHHhc--CCceEEEEec----ccCccccc
Q psy8850          88 HIITVQ-TEHKSVLDSI--------RKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVML----VNNEIGVI  152 (397)
Q Consensus        88 ~vl~~~-~~~~s~~~~~--------~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~--~~~~~v~~~~----~~~~tG~~  152 (397)
                      +|++++ +.|+++...+        ..+...|.+++.++. +++.+|+++++++++  +++++|++++    ++||+|.+
T Consensus       118 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v  196 (427)
T 3hvy_A          118 TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRI  196 (427)
T ss_dssp             EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCH
T ss_pred             EEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccH
Confidence            999998 9998887544        233344999999998 678899999999998  8999999999    99999999


Q ss_pred             ccHHHHHHHHHh--cCcEEEEecccccCccccccCcccccEEEeccccccCC---CCceEEEEecCCCCccccccccCCc
Q psy8850         153 QPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGP---KGIGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       153 ~~l~~i~~l~~~--~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~g~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                      .|+++|+++|++  +|+++++|++|+.+.........++|++++|+||.+|+   ...|++++++++.+.+........ 
T Consensus       197 ~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~-  275 (427)
T 3hvy_A          197 AEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPG-  275 (427)
T ss_dssp             HHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT-
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCC-
Confidence            999999999999  89999999999876532233345789999999994443   224999998776666544221100 


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC-CCCceEEEEec
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFN  299 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  299 (397)
                       .+...+ ++......+...++    ..+.+.++..+++.++.+.|++ + ++.+...+.. ....++.+.+.
T Consensus       276 -~g~~~~-~~~~~a~~~~~gl~----~~~~r~~~~~~~a~~la~~L~~-~-g~~V~p~~~~~~~~li~~~~l~  340 (427)
T 3hvy_A          276 -IGGECG-STFGVMRSLYEGLF----MAPHVTIEAVKGAVFCARIMEL-A-GFDVLPKYNDKRTDIIQAIKFN  340 (427)
T ss_dssp             -TGGGCC-CCTTCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-T-TCEEESCTTSCCSSSEEEEECS
T ss_pred             -cccccC-CCHHHHHHHHHhHh----HHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCCCCCceEEEEEeCC
Confidence             001111 11111121212222    2355777888899999999998 4 4566443221 22226666665

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.92  E-value=6.3e-24  Score=201.75  Aligned_cols=311  Identities=14%  Similarity=0.093  Sum_probs=199.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ..+|.|++++.+++.....      +  + ...+...++++.++++++ ..+++++++||++|++.+++.+...  .+++
T Consensus        69 ~~~p~v~~A~~~~~~~~~~------~--~-~~~~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~--~~~~  136 (429)
T 3k28_A           69 HANDRVVEALKAVAERGTS------F--G-APTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGY--TGRN  136 (429)
T ss_dssp             BSCHHHHHHHHHHHHHCSC------C--S-SCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHH--HTCC
T ss_pred             CCCHHHHHHHHHHHhhCcC------c--C-CCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHh--hCCC
Confidence            4689999999999876221      1  1 112456788899999987 5678999999999999999876522  2567


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCc-----------------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccC
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGF-----------------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNN  147 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~-----------------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~  147 (397)
                      +|++.++.|++...........+.                 .+..+|.+     |+++++++++   +++++|+++.+++
T Consensus       137 ~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~  211 (429)
T 3k28_A          137 KILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFGDDIACVIVEPVAG  211 (429)
T ss_dssp             EEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBC
T ss_pred             EEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCCC
Confidence            888888877654432211110011                 22333332     8999999887   4678888988888


Q ss_pred             ccccccc----HHHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850         148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI  218 (397)
Q Consensus       148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~  218 (397)
                      ++|.+.+    +++|.++|++||++||+|++|.....    ..+.....+|++++|  | +.++.++|+++++++..+.+
T Consensus       212 ~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~s--K~~~~G~~iG~~~~~~~~~~~~  289 (429)
T 3k28_A          212 NMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTCLG--KVIGGGLPVGAYGGKAEIMRQV  289 (429)
T ss_dssp             TTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEEEC--GGGGTTSCCEEEEECHHHHTTB
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceehhh--hhhcCCCCeEEEEEcHHHHhhh
Confidence            8899888    99999999999999999999962210    111122346776655  9 54444689999987665555


Q ss_pred             ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEE
Q psy8850         219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLN  295 (397)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~  295 (397)
                      .+...   ... ......+...+++..++++...   ++..+++.++++++++.|++.   .+.......    .+.++.
T Consensus       290 ~~~~~---~~~-~~t~~~~~~a~aaa~aal~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~  358 (429)
T 3k28_A          290 APSGP---IYQ-AGTLSGNPLAMAAGYETLVQLT---PESYVEFERKAEMLEAGLRKAAEKHGIPHHINR----AGSMIG  358 (429)
T ss_dssp             TTTSS---BCC-CCTTTTCHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE----ETTEEE
T ss_pred             ccCCC---ccc-cCCCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEe----eccEEE
Confidence            33110   000 1112344455555556776543   566777777777777777662   122211111    134555


Q ss_pred             EEecCCC--------------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHH
Q psy8850         296 ISFNFIE--------------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI  359 (397)
Q Consensus       296 ~~~~~~~--------------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i  359 (397)
                      +.+...+              ..++.+.+.  ||.+.++.                       .+.+|+++  .++++++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~r~~~--~~t~e~i  413 (429)
T 3k28_A          359 IFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ-----------------------FEGLFLST--VHSDADI  413 (429)
T ss_dssp             EESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-----------------------TSCBCCCT--TCCHHHH
T ss_pred             EEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC-----------------------CCCEEEEC--CCCHHHH
Confidence            5553211              144555554  77777642                       15678764  4799999


Q ss_pred             HHHHHHHHHHHHHH
Q psy8850         360 DFTIKLLKMKVKKL  373 (397)
Q Consensus       360 ~~~~~~l~~~~~~~  373 (397)
                      ++++++|+++++++
T Consensus       414 ~~~l~~l~~~l~~~  427 (429)
T 3k28_A          414 EATIAAAEIAMSKL  427 (429)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.92  E-value=5.1e-23  Score=195.49  Aligned_cols=311  Identities=14%  Similarity=0.108  Sum_probs=193.0

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ..+|++++++.+++.....   . .+     ..+...++++.++++++ ..+++++++||++|++.+++.+.. + .+++
T Consensus        69 ~~~p~v~~A~~~~~~~~~~---~-~~-----~~~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~-~-~~~~  136 (429)
T 4e77_A           69 HNHPAIRQAVIEAVERGLS---F-GA-----PTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARG-Y-TGRD  136 (429)
T ss_dssp             BTCHHHHHHHHHHHTTCSC---C-SS-----CCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHH-H-HCCC
T ss_pred             CCCHHHHHHHHHHHHhCcc---c-CC-----CCHHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHH-h-hCCC
Confidence            3689999999999876221   1 11     12466788999999987 567899999999999999985432 2 2456


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCc-----------------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccC
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGF-----------------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNN  147 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~-----------------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~  147 (397)
                      +|++..+.|++...........+.                 .+..++.+     |+++|+++++   +++++|+++.+++
T Consensus       137 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~  211 (429)
T 4e77_A          137 KIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQYPQEVACIIVEPVAG  211 (429)
T ss_dssp             EEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHSTTTEEEEEECSSBC
T ss_pred             EEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhcCCCEEEEEECCccC
Confidence            788877777766542221110011                 12222222     8999999987   3677888877777


Q ss_pred             ccccccc----HHHHHHHHHhcCcEEEEeccccc---Ccc-ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850         148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAV---GKI-DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI  218 (397)
Q Consensus       148 ~tG~~~~----l~~i~~l~~~~gi~livD~a~~~---~~~-~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~  218 (397)
                      ++|.+.+    +++|.++|++||++||+|++|+.   |.. ..+.....+|++++  +| +.++.++|+++++++..+.+
T Consensus       212 ~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~t~--sK~~~~G~~~G~~~~~~~~~~~l  289 (429)
T 4e77_A          212 NMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLTCL--GKIIGGGMPVGAFGGRREVMNAL  289 (429)
T ss_dssp             TTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEEEE--EGGGGTTSCCEEEEECHHHHTTB
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCeeee--cccccCCCCeEEEEECHHHHHHh
Confidence            7788888    89999999999999999999982   211 11222234677654  59 54444589999987665555


Q ss_pred             ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEE
Q psy8850         219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLN  295 (397)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~  295 (397)
                      .+...    .......+.+...+++..++++.+.+  +++.+++.++.+++++.|.+.   .+.......    .+.++.
T Consensus       290 ~~~~~----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~  359 (429)
T 4e77_A          290 APTGP----VYQAGTLSGNPIAMAAGFACLTEISQ--VGVYETLTELTDSLATGLRHAAKEENIPLVVNH----VGGMFG  359 (429)
T ss_dssp             TTTSS----BCC--CCCCCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE----ETTEEE
T ss_pred             ccCCC----ccccCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEE----eeeEEE
Confidence            43210    00111223555666666678886643  345556666666666666541   222111111    145666


Q ss_pred             EEecCCCh---------------HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         296 ISFNFIEG---------------ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       296 ~~~~~~~~---------------~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      +.++..+.               .++.+.|.  ||.+.++.                       ...+|+  +..+++++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~~~~--~~~~t~e~  414 (429)
T 4e77_A          360 LFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA-----------------------FEAGFM--SLAHSNED  414 (429)
T ss_dssp             EECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST-----------------------TSCEEC--CTTCCHHH
T ss_pred             EEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC-----------------------CCCEEE--eccCCHHH
Confidence            77654311               45665554  78777652                       133454  45579999


Q ss_pred             HHHHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKVKK  372 (397)
Q Consensus       359 i~~~~~~l~~~~~~  372 (397)
                      +++++++|++++++
T Consensus       415 i~~~l~~l~~~l~~  428 (429)
T 4e77_A          415 IQKTVNAARRCFAK  428 (429)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988753

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.91  E-value=2e-22  Score=198.71  Aligned_cols=297  Identities=12%  Similarity=0.051  Sum_probs=210.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN  121 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~  121 (397)
                      .+.++++.+++++|++. .+++++|++.|+..++.+++    ++||+|+++.++|.|+..++...   |.+++.++.+.+
T Consensus       196 ~i~eaE~~lA~~fGa~~-a~~v~nGts~An~~ai~al~----~pGD~VLv~r~~H~S~~~~l~ls---Ga~pv~v~~~~~  267 (715)
T 3n75_A          196 PHKEAEQYIARVFNADR-SYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKSLTHLMMMS---DVTPIYFRPTRN  267 (715)
T ss_dssp             HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHS---CCEEEEECCCBC
T ss_pred             HHHHHHHHHHHHhCCCC-ceEECcHHHHHHHHHHHHhC----CCCCEEEECCCccHHHHHHHHHc---CCEEEEEecccc
Confidence            57889999999999972 46666777899999999988    89999999999999999987766   999999987532


Q ss_pred             -C----CC-----CHHHHHHHhcCC--ce---EEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc--cc--
Q psy8850         122 -G----LI-----TLSQLEEKICSD--TI---LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI--DI--  182 (397)
Q Consensus       122 -~----~~-----d~~~l~~~i~~~--~~---~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~--~~--  182 (397)
                       .    .+     |+++++++++++  ++   +++++++ |++|.+.|+++|+++|++++  +++|++|+.+..  +.  
T Consensus       268 ~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~  344 (715)
T 3n75_A          268 AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE  344 (715)
T ss_dssp             TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGT
T ss_pred             ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccc
Confidence             2    24     899999999742  34   8899988 99999999999999998774  799999985531  11  


Q ss_pred             ccCcc--c--ccEE---Eecccc-ccCCCCceEEEEecCCCCc-cccccccCCccccccCCCCchhHHHHHHHHHHHHHH
Q psy8850         183 NIQNY--K--VDLM---SFSAHK-IYGPKGIGALYIRRNPRTR-IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI  253 (397)
Q Consensus       183 ~~~~~--~--~d~~---~~s~~K-~~g~~g~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~  253 (397)
                      +....  +  +|++   +.|+|| +.|+.+.|+++++++.... +....      ..+.+++++...++++.++++++..
T Consensus       345 ~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~------~~~~STSpsy~~~AsldaA~~~~~~  418 (715)
T 3n75_A          345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAY------MMHTTTSPHYGIVASTETAAAMMKG  418 (715)
T ss_dssp             TSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHH------HHTSCSSCCHHHHHHHHHHHHHHSH
T ss_pred             cccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHH------HhhcCCCchHHHHHHHHHHHHHHHh
Confidence            11111  2  5765   999999 6777678999998752211 11111      1234567889999999999988863


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhcCc------EEEeCCCCCC--------------------------CCceEEEEecC
Q psy8850         254 -EMKEELKRILFLQKRLYNGLMESIEE------IYINGDMNNR--------------------------IPHNLNISFNF  300 (397)
Q Consensus       254 -~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~--------------------------~~~~~~~~~~~  300 (397)
                       ...++.+++.++.+++++.|.+ +++      +.++.++...                          .+.-+.+..++
T Consensus       419 ~~g~~~~~~l~~~a~~~r~~L~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~  497 (715)
T 3n75_A          419 NAGKRLINGSIERAIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPG  497 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSC
T ss_pred             hccHHHHHHHHHHHHHHHHHHHH-hhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCC
Confidence             4566889999999999999988 653      4555432110                          01112222221


Q ss_pred             -----------CChHHHHHHhCCcEecccCccCCCCCChhhHHHhhCCCccc-cCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         301 -----------IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDEL-AHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       301 -----------~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                                 +++..+.                      ..|+..|+.... ....|-+-++...+++++++++++|.+
T Consensus       498 ~~~~G~~~~~Gi~g~~~~----------------------~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~  555 (715)
T 3n75_A          498 MEKDGTMSDFGIPASIVA----------------------KYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTD  555 (715)
T ss_dssp             BCTTSCBCSSCCCHHHHH----------------------HHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCccccCCCcHHHHH----------------------HHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence                       1112222                      234555655444 245677777777899999999999999


Q ss_pred             HHHHHHhcCc
Q psy8850         369 KVKKLRELSP  378 (397)
Q Consensus       369 ~~~~~~~~~~  378 (397)
                      +-+.+.+..|
T Consensus       556 ~~~~~~~~~~  565 (715)
T 3n75_A          556 FKRAFDLNLR  565 (715)
T ss_dssp             HHHHHHTTCB
T ss_pred             HHHHhhcccc
Confidence            8776655433

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.91  E-value=2.9e-22  Score=183.01  Aligned_cols=334  Identities=14%  Similarity=0.202  Sum_probs=222.2

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHH-HHHHHHHHHhCCCCCc---EEEeCChhHHHHHHHHH
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIE-KARNEVAQLIYADPRE---IIWTSGATESNNLAIKG   77 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~---i~~~~g~t~a~~~~l~~   77 (397)
                      +|...+++.|++++-..+...|  ++|.. .|..|-...+.++ -+.+..+++||++...   =+-..||+.|+..+..+
T Consensus        61 ASEN~~S~aV~~a~gS~ltnKYaEGyPg~-RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~A  139 (490)
T 3ou5_A           61 ASENFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA  139 (490)
T ss_dssp             TTCCCCCHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCCcCCHHHHHHhcCcccccccCCCCCc-cccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHH
Confidence            4566789999999999988755  57776 4444545454444 4788999999998652   13345888999999999


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHH-----HhhCC--cEEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCc
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRK-----LENDG--FRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNE  148 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~-----~~~~g--~~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~  148 (397)
                      ++    +|||+|+..+..|.++...-..     ..-.|  ++...++++ +++.||.|++++...+ +|++|++-...+|
T Consensus       140 ll----~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~  215 (490)
T 3ou5_A          140 LL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA  215 (490)
T ss_dssp             HC----C-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCC
T ss_pred             Hc----CCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccCc
Confidence            99    8999999999888777554311     10012  244445555 5789999999998765 8999988765555


Q ss_pred             ccccccHHHHHHHHHhcCcEEEEecccccCc-----cccccCcccccEEEecccc-ccCCCCceEEEEecCC--------
Q psy8850         149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNP--------  214 (397)
Q Consensus       149 tG~~~~l~~i~~l~~~~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~--------  214 (397)
                        ...|++++.++|++.|+++++|.+|-.|.     .+-.+.  .+|+++.|.|| +.||.| |+++++++.        
T Consensus       216 --r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~~~k~~  290 (490)
T 3ou5_A          216 --RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTG  290 (490)
T ss_dssp             --SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCSC-EEEEEECSEEEECC--C
T ss_pred             --cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc--cceEEeccccccccCCCc-eEEEecccccccccccc
Confidence              66789999999999999999999997433     332232  58999999999 999986 999988642        


Q ss_pred             -------CCccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCC
Q psy8850         215 -------RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM  286 (397)
Q Consensus       215 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  286 (397)
                             .+++....+.+      ..|.|-.+.+++...++.+. ...+..+.+++..+++.|.+.|.+  .|+.++.. 
T Consensus       291 ~~~~~~~~kkin~aVFPg------~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~--~G~~vvsG-  361 (490)
T 3ou5_A          291 REIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSG-  361 (490)
T ss_dssp             CEEECCCHHHHHHHHTTT------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGG-
T ss_pred             chhHHHHHHHHHhhcCcc------ccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--CCCeeecC-
Confidence                   11222222222      13567778888888888764 446899999999999999999999  89998863 


Q ss_pred             CCCCCceEEEEec--CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHH
Q psy8850         287 NNRIPHNLNISFN--FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKE  358 (397)
Q Consensus       287 ~~~~~~~~~~~~~--~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~  358 (397)
                       .+..+++.+.+.  +.+..+....|.  +|.+..-.....              ..+...+.|||+.+..    ..++|
T Consensus       362 -gTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D--------------~sp~~~SGiRiGTpa~TtRG~~e~d  426 (490)
T 3ou5_A          362 -GTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD--------------RSAITPGGLRLGAPALTSRQFREDD  426 (490)
T ss_dssp             -SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTC--------------CCSSSCSEEEEESHHHHHTTCCHHH
T ss_pred             -CCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCC--------------CCCCCCCeeEECCHHHHhCCCCHHH
Confidence             334677777765  456666666665  666543211110              1122247899986432    56899


Q ss_pred             HHHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKVK  371 (397)
Q Consensus       359 i~~~~~~l~~~~~  371 (397)
                      ++++.+.|.+++.
T Consensus       427 m~~IA~~I~~~l~  439 (490)
T 3ou5_A          427 FRRVVDFIDEGVN  439 (490)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887764

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.90  E-value=7.4e-23  Score=194.11  Aligned_cols=307  Identities=15%  Similarity=0.097  Sum_probs=197.7

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +++++.+++++.+++....   .. .+     ..+...++++.++++++ .++++++++||++|+..+++... .+ .++
T Consensus        67 G~~~p~v~~a~~~~~~~~~---~~-~~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar-~~-~~~  134 (424)
T 2e7u_A           67 GHAHPKVLARVRETLERGL---TF-GA-----PSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLAR-GY-TGR  134 (424)
T ss_dssp             CBTCHHHHHHHHHHHHTCS---CC-SS-----CCHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHH-HH-HCC
T ss_pred             CCCCHHHHHHHHHHHHhCC---CC-CC-----CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHH-Hh-hCC
Confidence            3468999999999987511   11 11     23456788999999986 56789999999999999998521 11 234


Q ss_pred             CEEEEcCCCChhhHHHHHHHh-----------hCCc------EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEeccc
Q psy8850          87 KHIITVQTEHKSVLDSIRKLE-----------NDGF------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVN  146 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~-----------~~g~------~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~  146 (397)
                      +.|++.++.|+++........           ..|.      .+..+|.     .|+++|+++++   +++++|++++++
T Consensus       135 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~  209 (424)
T 2e7u_A          135 PYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRGEEIAAIIFEPVV  209 (424)
T ss_dssp             CEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSB
T ss_pred             CEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCCCCEEEEEEeCCC
Confidence            778888888877543221110           0122      3445554     38999999987   467788777666


Q ss_pred             Cccccccc----HHHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCc
Q psy8850         147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR  217 (397)
Q Consensus       147 ~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~  217 (397)
                      +++|.+.|    +++|.++ ++||++||+|++|+....    ..+.....+|++  |++| +.++..+|+++++++..+.
T Consensus       210 ~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~~~  286 (424)
T 2e7u_A          210 GNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRREIMEK  286 (424)
T ss_dssp             CTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHHTT
T ss_pred             CCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHHhh
Confidence            66998887    8999999 999999999999982211    011112246766  5669 5443357999998766555


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CcE-EEeCCCCCCCCc
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI----EEI-YINGDMNNRIPH  292 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~-~~~~~~~~~~~~  292 (397)
                      +.+...   . ........|...+++..++++.+.+ .+++.+++.++++++++.|++ +    +.. .+.+.     +.
T Consensus       287 ~~~~~~---~-~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~-----g~  355 (424)
T 2e7u_A          287 VAPLGP---V-YQAGTLSGNPLAMAAGLATLELLEE-NPGYYAYLEDLGARLEAGLKE-VLKEKGLPHTVNRV-----GS  355 (424)
T ss_dssp             BTTTSS---B-CCCCTTCSCHHHHHHHHHHHHHHHH-CTHHHHHHHHHHHHHHHHHHH-HHHHTTCCCEEEEE-----TT
T ss_pred             hcccCC---c-ccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH-HHHhCCCceEEEee-----ce
Confidence            543110   0 0011113445556666678877654 256778888888888888876 3    221 12221     45


Q ss_pred             eEEEEecCC--------------ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850         293 NLNISFNFI--------------EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE  356 (397)
Q Consensus       293 ~~~~~~~~~--------------~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~  356 (397)
                      ++++.++..              ...++.+.|.  ||.+.++.                       ...+|++  ..+++
T Consensus       356 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~~~--~~~t~  410 (424)
T 2e7u_A          356 MITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN-----------------------FEAAFLS--VAHRE  410 (424)
T ss_dssp             EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS-----------------------SSCEECC--TTCCH
T ss_pred             EEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC-----------------------CCceEee--ccCCH
Confidence            667777531              1235655554  78877652                       0235554  55799


Q ss_pred             HHHHHHHHHHHHH
Q psy8850         357 KEIDFTIKLLKMK  369 (397)
Q Consensus       357 ~~i~~~~~~l~~~  369 (397)
                      +++++++++|+++
T Consensus       411 ~~i~~~l~~l~~~  423 (424)
T 2e7u_A          411 EDVEKTLEALRKA  423 (424)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.90  E-value=7.5e-23  Score=187.72  Aligned_cols=312  Identities=15%  Similarity=0.091  Sum_probs=205.8

Q ss_pred             HHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc---CCC
Q psy8850          46 ARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP---KNN  121 (397)
Q Consensus        46 ~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~---~~~  121 (397)
                      +.++|+.+ |.+.. ..++++|+|.++.+++.+.++....++++|+++..+|.|...++..+   |+++++++.   ++.
T Consensus       122 ~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~---Gl~Pv~V~p~~d~~~  197 (501)
T 3hl2_A          122 VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA---GFEPVVIENVLEGDE  197 (501)
T ss_dssp             HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECEEEETTE
T ss_pred             HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc---CCeEEEEeeeecccc
Confidence            45555555 98754 48999999977777766666321012499999999999999999998   999999977   345


Q ss_pred             CCCCHHHHHHHhcCC---ceEEE-EecccCcccccccHHHHHHHHHhcCcEEEEecccccCccc-----cccCccc-ccE
Q psy8850         122 GLITLSQLEEKICSD---TILVS-VMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID-----INIQNYK-VDL  191 (397)
Q Consensus       122 ~~~d~~~l~~~i~~~---~~~v~-~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~-----~~~~~~~-~d~  191 (397)
                      ..+|+++++++|.+.   ..+++ .+.+.|..|...|+++|+++|++||++++||+||+.....     .....++ +|+
T Consensus       198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~  277 (501)
T 3hl2_A          198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA  277 (501)
T ss_dssp             EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcE
Confidence            678999999999763   23333 3333343456789999999999999999999999965421     1222335 999


Q ss_pred             EEecccc-ccCCCCceEEEEecC-CCCccccccccCCccccccCCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         192 MSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIV-GMGEAFRLARIEMKEELKRILFLQKR  268 (397)
Q Consensus       192 ~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~al~~~~~~~~~~~~~~~~~~~~  268 (397)
                      ++.|.|| ++.+.|.++++.+++ ..+.+....+          |+.+....+ .+...+.+..+++.++.++..++.++
T Consensus       278 vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yP----------Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~  347 (501)
T 3hl2_A          278 FVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP----------GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSY  347 (501)
T ss_dssp             EEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSC----------SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccceeecCceEEEeCCHHHHHHHHHhCC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 888888666666643 2233322222          222233333 44445566678899999999999999


Q ss_pred             HHHHHhhhcCc---EEEeCCCCCCCCceEEEEecCCC------hHHHHHHhC-----Cc-EecccCccCCCCCChhhHHH
Q psy8850         269 LYNGLMESIEE---IYINGDMNNRIPHNLNISFNFIE------GESLLMAIK-----DI-AVSSGSACTSASLEPSYVLR  333 (397)
Q Consensus       269 l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~-----~i-~~~~g~~~~~~~~~~~~~~~  333 (397)
                      |++.|++ +..   -.++..+.  .+.-+.+.+....      ..++...|.     |- .+.+|..-    ....+.++
T Consensus       348 L~~~L~~-la~~~ge~ll~~~~--n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~----~i~g~~f~  420 (501)
T 3hl2_A          348 LSNQIKK-LSEAYNERLLHTPH--NPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQ----TVSGYTFR  420 (501)
T ss_dssp             HHHHHHH-HHHTTTCCBCCCTT--CSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCE----EETTEEES
T ss_pred             HHHHHHH-HHHhcChhhcCCCC--CceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCce----EECCeeec
Confidence            9999988 543   23333222  2444555554331      234444443     32 22333200    00012223


Q ss_pred             hhCCC-ccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Q psy8850         334 ALGCN-DELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSP  378 (397)
Q Consensus       334 ~~g~~-~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~  378 (397)
                      .+|-. ..+...++-+....-++.+|||.++++|.+++.++++...
T Consensus       421 ~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~  466 (501)
T 3hl2_A          421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERS  466 (501)
T ss_dssp             STTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33332 2334588999999889999999999999999998877443

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.90  E-value=1.3e-21  Score=182.26  Aligned_cols=317  Identities=15%  Similarity=0.079  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCc-EEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEec
Q psy8850          39 AEKAIEKARNEVAQLIYADPRE-IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK  117 (397)
Q Consensus        39 ~~~~~~~~~~~la~~~~~~~~~-i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~  117 (397)
                      .....+.+..++.+++|++... .++++|+|.+..+++.+.++....+++.|+++...|.|+..++..+   |+.++.++
T Consensus        96 ~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~---Gl~p~~v~  172 (450)
T 3bc8_A           96 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---GFEPVVIE  172 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc---CCeeEEEE
Confidence            3456677899999999998554 6899999855555544444322233789999999999999999998   99988886


Q ss_pred             c---CCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcccc-----ccC
Q psy8850         118 P---KNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI-----NIQ  185 (397)
Q Consensus       118 ~---~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~-----~~~  185 (397)
                      .   ++.+.+|++.|+++|.+    .+.+|+.+...+.+|.+.|+++|+++|++||+++|||+||+......     ...
T Consensus       173 ~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~  252 (450)
T 3bc8_A          173 NVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGA  252 (450)
T ss_dssp             CEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHH
T ss_pred             eeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHh
Confidence            6   45678999999999965    33455555444546789999999999999999999999999543211     111


Q ss_pred             cc-cccEEEecccc-ccCCCCceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHH-HHHHHHHHHHHHHH
Q psy8850         186 NY-KVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA-FRLARIEMKEELKR  261 (397)
Q Consensus       186 ~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-l~~~~~~~~~~~~~  261 (397)
                      .. ++|+++.|.|| ++.+.|++++++++. ....+...+.+      ..++.|   . +.++.. +.+..+++.+..++
T Consensus       253 ~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g------~~s~Sp---s-L~l~~~l~~~G~~g~~~~i~~  322 (450)
T 3bc8_A          253 RVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG------RASASP---S-LDVLITLLSLGCSGYRKLLKE  322 (450)
T ss_dssp             HHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS------CBCSHH---H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhc------CCcccH---H-HHHHHHHHHHHHHHHHHHHHH
Confidence            11 68999999999 778888888888632 22222221111      111122   1 222233 23345567888888


Q ss_pred             HHHHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEEEEec------CCChHHHHHHhC-----CcEecc-cCccCCCCC
Q psy8850         262 ILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFN------FIEGESLLMAIK-----DIAVSS-GSACTSASL  326 (397)
Q Consensus       262 ~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~-----~i~~~~-g~~~~~~~~  326 (397)
                      ..++++++++.|++ ++   +..+...+.....  ..+.++      +.+...+.-.+.     |..+.+ |..-.   .
T Consensus       323 ~~~~a~~l~~~l~~-~~~~~g~~~l~~~~~~~~--~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~---~  396 (450)
T 3bc8_A          323 RKEMFVYLSTQLKK-LAEAHNERLLQTPHNPIS--LAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQT---V  396 (450)
T ss_dssp             HHHHHHHHHHHHHH-HHHHTTCCBCCCTTCSSE--EEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEE---E
T ss_pred             HHHHHHHHHHHHHh-hHHhcCceecCCccCCCc--ceeecccccccccCCCceeEEEecCCCCccceeeecccccc---h
Confidence            88999999999988 77   7766654322111  123222      223445544442     333331 10000   0


Q ss_pred             ChhhHHHhhCCCccc-cCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         327 EPSYVLRALGCNDEL-AHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       327 ~~~~~~~~~g~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      . ...++.+|+.... ....|-+.++...+++++++++++|+++.++.++
T Consensus       397 ~-~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~  445 (450)
T 3bc8_A          397 S-GHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK  445 (450)
T ss_dssp             T-TEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-HHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            0 0122344443322 3467888888889999999999999999876654

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.90  E-value=4.6e-22  Score=190.72  Aligned_cols=321  Identities=15%  Similarity=0.124  Sum_probs=200.5

Q ss_pred             CCCCHHHHHHHHHHHhhc-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc--
Q psy8850           7 TPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~--   83 (397)
                      +..+|.|++++.+++... ..+..  .+.. ....+....+.+.|+++++...+.++|++||++|++.+++.+..++.  
T Consensus        78 Gh~~p~v~~A~~~~~~~~~~~~~~--~~~~-~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~  154 (472)
T 1ohv_A           78 GYSHPALVKLVQQPQNVSTFINRP--ALGI-LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSK  154 (472)
T ss_dssp             CBTCHHHHHHHHCGGGHHHHHCCC--CTTT-SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhhccccccc--cccc-ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhh
Confidence            456899999999876431 11111  1110 11123344455545556655567899999999999999997753210  


Q ss_pred             --c-----------------CC---CEEEEcCCCChhhHHHHHHHhh------CCcE---EEEeccCCC-C---------
Q psy8850          84 --K-----------------RG---KHIITVQTEHKSVLDSIRKLEN------DGFR---VTYLKPKNN-G---------  122 (397)
Q Consensus        84 --~-----------------~g---~~vl~~~~~~~s~~~~~~~~~~------~g~~---v~~v~~~~~-~---------  122 (397)
                        .                 +|   ++|++.++.|++.......+..      .+..   +..+++... .         
T Consensus       155 ~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  234 (472)
T 1ohv_A          155 ERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKEN  234 (472)
T ss_dssp             HHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHH
T ss_pred             ccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccc
Confidence              0                 23   7899888888776655433311      1111   111222210 0         


Q ss_pred             ----CCCHHHHHHHhcC------CceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCccc--cccC
Q psy8850         123 ----LITLSQLEEKICS------DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID--INIQ  185 (397)
Q Consensus       123 ----~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~~--~~~~  185 (397)
                          ..|+++|++++++      ++++|++++++|++|.+.|    +++|.++|++||+++|+|++|+ +|...  +.+.
T Consensus       235 ~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~  314 (472)
T 1ohv_A          235 QQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHE  314 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGG
T ss_pred             hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhcc
Confidence                1268899999876      8899999999999998877    8999999999999999999998 34321  2333


Q ss_pred             ccc----ccEEEeccccc-cCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy8850         186 NYK----VDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK  260 (397)
Q Consensus       186 ~~~----~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~  260 (397)
                      .++    +|++++|  |. +|  | |+++ +++. ..+.+...       +.....+...+++..++++.+.+  ..+.+
T Consensus       315 ~~gv~~~~Di~t~s--K~~l~--G-G~~~-~~~~-~~~~~~~~-------~~T~~~~~~~~aaa~aal~~~~~--~~~~~  378 (472)
T 1ohv_A          315 HWGLDDPADVMTFS--KKMMT--G-GFFH-KEEF-RPNAPYRI-------FNTWLGDPSKNLLLAEVINIIKR--EDLLS  378 (472)
T ss_dssp             GGCCSSCCSEEEEC--GGGSS--E-EEEE-CGGG-SCSSSSSS-------CCSSSSCHHHHHHHHHHHHHHHH--TTHHH
T ss_pred             ccCCCCCCCEEEEc--ccccc--C-CccC-chhh-cccccccc-------cCccCccHHHHHHHHHHHHHHHh--CCHHH
Confidence            333    7877655  95 34  2 6665 4432 21111111       11112355566666688887765  35677


Q ss_pred             HHHHHHHHHHHHHhhh---cCc-EEEeCCCCCCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccCCCCCChhhHHH
Q psy8850         261 RILFLQKRLYNGLMES---IEE-IYINGDMNNRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLR  333 (397)
Q Consensus       261 ~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~  333 (397)
                      ++.+++++|++.|++.   +++ +......    +.++.+.++.. ....+...|.  |+.+.++.              
T Consensus       379 ~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~----g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g--------------  440 (472)
T 1ohv_A          379 NAAHAGKVLLTGLLDLQARYPQFISRVRGR----GTFCSFDTPDESIRNKLISIARNKGVMLGGCG--------------  440 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTCEEEEEE----TTEEEEECSSHHHHHHHHHHHHHTTEECEEET--------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEeecCC----ceEEEEEeCChhHHHHHHHHHHHCCeEEecCC--------------
Confidence            8888888888888761   232 3222211    34555555421 2345666664  77776531              


Q ss_pred             hhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         334 ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       334 ~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                               .+.|||+++..+++++|++++++|+++++++
T Consensus       441 ---------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          441 ---------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             ---------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             ---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence                     2789999999999999999999999988653

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.89  E-value=7.9e-22  Score=186.13  Aligned_cols=255  Identities=15%  Similarity=0.120  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHhCCCCCcE--EEeCChhHHHHHHHHHhHhhhccCCCEEEEcC-CCChhhHHHHH-------HHhhCCc
Q psy8850          42 AIEKARNEVAQLIYADPREI--IWTSGATESNNLAIKGAAHFYKKRGKHIITVQ-TEHKSVLDSIR-------KLENDGF  111 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i--~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~-~~~~s~~~~~~-------~~~~~g~  111 (397)
                      ...++++.+++++|.+...+  ++ +||++|+..++.++.    ++||+|+++. +.|.++...+.       .+...|.
T Consensus        66 ~~~~l~~~la~~~g~~~~~~~i~~-~sGt~Ai~~al~al~----~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~  140 (431)
T 3ht4_A           66 GRDTLEKVYADVFGAEAGLVRPQI-ISGTHAISTALFGIL----RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI  140 (431)
T ss_dssp             HHHHHHHHHHHHTTCSEECCBTTS-CSHHHHHHHHHHTTC----CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC
T ss_pred             hHHHHHHHHHHHhCCCccccccee-eCHHHHHHHHHHHhC----CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC
Confidence            47889999999999874322  24 488999999999887    7999999998 89998876653       2333499


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEec-ccCccc---ccccHHHHHHHHHh--cCcEEEEecccccCccccccC
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVML-VNNEIG---VIQPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQ  185 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~-~~~~tG---~~~~l~~i~~l~~~--~gi~livD~a~~~~~~~~~~~  185 (397)
                      +++.++.++++.+|++++++++++++++|++++ ++||+|   .+.++++|+++|++  +|+++|+|++|+.+....+..
T Consensus       141 ~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~  220 (431)
T 3ht4_A          141 GYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC  220 (431)
T ss_dssp             EEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG
T ss_pred             EEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc
Confidence            999999988899999999999999999999995 555655   55568899999999  999999999999776433344


Q ss_pred             cccccEEEecccc-ccC---CCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         186 NYKVDLMSFSAHK-IYG---PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKR  261 (397)
Q Consensus       186 ~~~~d~~~~s~~K-~~g---~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~  261 (397)
                      .+++|++++|++| +.|   +.| |++++++++.+.+........  .+...+ ++......+...++.    .+.+.++
T Consensus       221 ~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~--~g~~~~-~~~~~~~~~~~~l~~----~~~~~~~  292 (431)
T 3ht4_A          221 HVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPG--IGAEAG-ASLYSLQEMYQGFFL----APHVAGQ  292 (431)
T ss_dssp             GTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTT--TTTSCS-CCCSCSHHHHHHHHH----HHHHHHH
T ss_pred             ccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCC--cccccC-ccHHHHHHHHhHhhh----HHHHHHH
Confidence            4578999999999 444   555 999998766655543221110  001111 111111112233332    3456677


Q ss_pred             HHHHHHHHHHHHhhhcCcEEEeCCCC-CCCCceEEEEecCC-ChHHHHHHhC
Q psy8850         262 ILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFNFI-EGESLLMAIK  311 (397)
Q Consensus       262 ~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l~  311 (397)
                      ..+++.++.+.|++ + ++.+...+. .....++.+.+++. ...++.+.|+
T Consensus       293 ~~~~a~~l~~~L~~-~-g~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l~  342 (431)
T 3ht4_A          293 ALKGAIFTAAFLEK-L-GMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQ  342 (431)
T ss_dssp             HHHHHHHHHHHHHH-H-TCCEESCTTSCCSSSCCEEECCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-C-cCEecCCCCCCCccEEEEEEeCCHHHHHHHHHHHH
Confidence            88888999999988 4 444443222 12233666776531 1234555554

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.88  E-value=4.7e-21  Score=180.44  Aligned_cols=316  Identities=15%  Similarity=0.134  Sum_probs=200.8

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +..+|+|++++.+++..... ..  .+      .....++.+.|++.+.- .+.+.|++|||+|++.+++... .+++ +
T Consensus       102 GH~hp~v~~Av~~q~~~~~~-~~--~~------~~~~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr-~~tg-r  169 (454)
T 4ao9_A          102 GHSAPEIRDAVIEAMQGGIN-LT--GH------NLLEGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAAL-HFTG-R  169 (454)
T ss_dssp             CSCCHHHHHHHHHHHHTCSC-CC--SE------ESSHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHH-HHHT-C
T ss_pred             cCCCHHHHHHHHHHHhcCCC-cc--CC------cHHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHH-hccc-C
Confidence            45689999999999876221 00  11      12345678888888863 4589999999999999999654 3434 4


Q ss_pred             CEEEEcCCCChhhHHHHHHH-hhC--CcEEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCccccccc----HH
Q psy8850          87 KHIITVQTEHKSVLDSIRKL-END--GFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP----IL  156 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~-~~~--g~~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~----l~  156 (397)
                      ++|+....+|++........ ...  ......+|.+     |++.+++.+.+   ++.+|+++.+++..|.+.|    ++
T Consensus       170 ~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~  244 (454)
T 4ao9_A          170 RKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQ  244 (454)
T ss_dssp             CEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHH
T ss_pred             CeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHH
Confidence            67777777666543211110 000  2344455544     78999988864   5789999999999999887    89


Q ss_pred             HHHHHHHhcCcEEEEecccccCccc----cccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL  231 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
                      +|.++|++||+++|+|++++ |...    .......+|+++++  | +.|+.++|++.++++..+.+.+..  +......
T Consensus       245 ~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~ei~~~~~~~~--~~~~h~~  319 (454)
T 4ao9_A          245 ALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRADVMALFDPRT--GPLAHSG  319 (454)
T ss_dssp             HHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHGGGCTTT--CSCCCCC
T ss_pred             HHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHHHHHHHHhhcc--CCccccC
Confidence            99999999999999999997 3221    11123368999887  9 666556899999987665554321  0111112


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCc-EEEeCCCCCCCCceEEEEecCC------
Q psy8850         232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEE-IYINGDMNNRIPHNLNISFNFI------  301 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~------  301 (397)
                      +.+. |...+++..++|+.+.+  ++..+++.++.++|++.|++.   .+- ..+.+.     +.++.+.|...      
T Consensus       320 T~~g-nPla~AAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~-----G~m~gi~f~~~~~~~~~  391 (454)
T 4ao9_A          320 TFNN-NVMTMAAGYAGLTKLFT--PEAAGALAERGEALRARLNALCANEGVAMQFTGI-----GSLMNAHFVQGDVRSSE  391 (454)
T ss_dssp             TTTT-CHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEE-----TTEEEEESCCSCCCSGG
T ss_pred             CCCC-CHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeee-----ceEEEEEEecCCCCCHH
Confidence            2222 34455555577887754  455667777777777777651   121 112221     34555555321      


Q ss_pred             -----Ch---HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         302 -----EG---ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       302 -----~~---~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                           +.   ..+...+.  ||.+.+.                         +.+.+++  .+|++|||+++++|++++.
T Consensus       392 ~~~~~d~~~~~~~~~~ll~~Gv~~~p~-------------------------~~~~~s~--~~T~~dId~~l~al~~~l~  444 (454)
T 4ao9_A          392 DLAAVDGRLRQLLFFHLLNEDIYSSPR-------------------------GFVVLSL--PLTDADIDRYVAAIGSFIG  444 (454)
T ss_dssp             GGTTCCHHHHHHHHHHHHHTTEECCTT-------------------------CEEECCT--TCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHCCEEEcCC-------------------------CCEEEeC--CCCHHHHHHHHHHHHHHHH
Confidence                 11   12222232  6666543                         3333443  4799999999999999999


Q ss_pred             HHHhcCcc
Q psy8850         372 KLRELSPL  379 (397)
Q Consensus       372 ~~~~~~~~  379 (397)
                      ++..+.|.
T Consensus       445 ~~~a~lPr  452 (454)
T 4ao9_A          445 GHGALLPR  452 (454)
T ss_dssp             HSGGGSCB
T ss_pred             hccccCCC
Confidence            99888875

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.87  E-value=4e-19  Score=168.05  Aligned_cols=326  Identities=14%  Similarity=0.130  Sum_probs=202.7

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .+..+|+|.+++++++.... ....  ..   ...+...++.+.|+++...+ .+.++|++||++|++.+++.. +.+++
T Consensus        78 lGh~~p~v~~Ai~~q~~~~~-~~~~--~~---~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklA-r~~t~  150 (456)
T 4atq_A           78 VGASDPAVVAAVQEAAAHFT-HTCF--MV---TPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVA-RLATG  150 (456)
T ss_dssp             TCTTCHHHHHHHHHHHHHCS-CCTT--TT---SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHC
T ss_pred             cCCCCHHHHHHHHHHHhhcc-Cccc--Cc---cCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHH-hhhhc
Confidence            34678999999999987732 1111  11   11234556778888888653 446999999999999999954 44444


Q ss_pred             CCCEEEEcCCCChhhH-HHHHHHhhC----------CcEEEEeccCC-----C-CCCCHHHHHHHh-------c-CCceE
Q psy8850          85 RGKHIITVQTEHKSVL-DSIRKLEND----------GFRVTYLKPKN-----N-GLITLSQLEEKI-------C-SDTIL  139 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~-~~~~~~~~~----------g~~v~~v~~~~-----~-~~~d~~~l~~~i-------~-~~~~~  139 (397)
                      + .+|+....+|++.. .+.......          ...+..+|...     . ...+.+.+++.+       . +++.+
T Consensus       151 r-~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAA  229 (456)
T 4atq_A          151 R-DAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAA  229 (456)
T ss_dssp             C-CEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEE
T ss_pred             C-CeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEE
Confidence            4 56666666665544 343332110          12355555431     1 112233333332       2 36789


Q ss_pred             EEEecccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCCCCceEEE
Q psy8850         140 VSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALY  209 (397)
Q Consensus       140 v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~  209 (397)
                      |+++.++...|.+.|    ++++.++|++||+++|+|+++.. |..    ..+.....+|+++++  | +.|...+|.++
T Consensus       230 vivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~  307 (456)
T 4atq_A          230 IIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAIT  307 (456)
T ss_dssp             EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEE
T ss_pred             EEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhh--hcccCcCCceeeE
Confidence            999999999998876    79999999999999999999873 222    122223468999988  9 76666689999


Q ss_pred             EecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCc--EEEeC
Q psy8850         210 IRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEE--IYING  284 (397)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~--~~~~~  284 (397)
                      ++++..+.+.+..++      .+.+. |...+++..++|+.+.+  +++.++.+++.+++.+.|++.   ++.  ..+++
T Consensus       308 ~~~~i~~~~~~~~~~------~Tf~g-npla~aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~  378 (456)
T 4atq_A          308 GRADLLDAVHPGGLG------GTYGG-NPVACAAALAAIDTMEQ--HDLNGRARHIEELALGKLRELAAELSAGGGSVVG  378 (456)
T ss_dssp             EEHHHHTTSCTTSSC------CSSSS-CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCC-----CEE
T ss_pred             ecHHHHhcccccCCC------CCCCC-ChHHHHhhHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhcccccCCceE
Confidence            998766665544332      23333 44555555588888765  345566666666666666551   211  11111


Q ss_pred             CCCCCCCceEEEEecCCC--------hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCC
Q psy8850         285 DMNNRIPHNLNISFNFIE--------GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT  354 (397)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~  354 (397)
                      +- ...+.++-+.+....        ...+...+.  |+.+.+..                     ..++.|||.++..+
T Consensus       379 ~V-RG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g---------------------~~~~~irl~PpL~i  436 (456)
T 4atq_A          379 DI-RGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG---------------------TYGNVIRLLPPLVI  436 (456)
T ss_dssp             EE-EEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC---------------------TTSCEEEECCCTTC
T ss_pred             Ee-eecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC---------------------CCCCEEEEECCCCC
Confidence            10 011445556663211        123444443  66654321                     01378999999999


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q psy8850         355 TEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       355 ~~~~i~~~~~~l~~~~~~  372 (397)
                      |++++|+++++|.++++.
T Consensus       437 t~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          437 SDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHh
Confidence            999999999999999874

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.76  E-value=3.7e-23  Score=196.13  Aligned_cols=316  Identities=14%  Similarity=0.073  Sum_probs=200.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ..+|.|++++.+++....      .+  . ...+...++.+.|+++++ ..+.+++++||++|++.+++.+.. + .+++
T Consensus       116 h~~p~V~~Av~~q~~~~~------~~--~-~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~-~-tgr~  183 (465)
T 2yky_A          116 HSHPVIRAAVERALAVGL------NL--S-TQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATA-I-TGRK  183 (465)
Confidence            457899999998886511      11  1 234567788999999985 446899999999999999986532 2 2457


Q ss_pred             EEEEcCCCChhhHHHHHHHh--hCCc--EEEEeccCCCCCCCHHHHHHHhc---CCceEEEEecccCccccccc----HH
Q psy8850          88 HIITVQTEHKSVLDSIRKLE--NDGF--RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP----IL  156 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~--~~g~--~v~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~----l~  156 (397)
                      +|++.++.|++...... .+  ..|+  .+..+|.     .|+++|+++++   +++++|+++.+++++|.+.|    ++
T Consensus       184 ~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~  257 (465)
T 2yky_A          184 TVLAFDGGYHGGLLNFA-SGHAPTNAPYHVVLGVY-----NDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLD  257 (465)
Confidence            88888888876554322 11  1133  3333343     27899999998   67899999888888998877    89


Q ss_pred             HHHHHHHhcCcEEEEecccccCccc----cccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCccccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL  231 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
                      +|.++|++||+++|+|++|+ +...    .+.....+|++  +++| +.++..+|+++++++..+.+.+...+. .....
T Consensus       258 ~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~-~~~~~  333 (465)
T 2yky_A          258 LLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMERFDPARDGA-FAHAG  333 (465)
Confidence            99999999999999999999 5321    11112246765  5569 444334799999988777665410010 00111


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--C--------
Q psy8850         232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--I--------  301 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------  301 (397)
                      .. ..|...+++..++++.+.+  +.+.+++.++.+++++.|++......+... ....+.++.+.|.+  .        
T Consensus       334 T~-~~npla~aAa~aaL~~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~g~G~~~~i~~~~~~~~~~~~~~~  409 (465)
T 2yky_A          334 TF-NNNILTMSAGHAALTQIYT--RQAASDLSASGDRFRANLNRIAVENQAPLQ-FTGLGSLGTIHFSRAPIRSAGDVRA  409 (465)
Confidence            12 2334445555577887755  457788888888888888772222222111 11224455565543  0        


Q ss_pred             -C---hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         302 -E---GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       302 -~---~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                       +   ...+...+.  ||.+.++..                       ..    ++..++++|||+++++|.++++++++
T Consensus       410 ~d~~~~~~~~~~ll~~GV~v~p~~~-----------------------~~----~s~~~t~edid~~l~~l~~~l~~~~~  462 (465)
T 2yky_A          410 ADQQLKELFFFHMLRKGIYLAPRGM-----------------------YA----LSLEIADAGRDAFAEALADFIGEQRA  462 (465)
Confidence             0   123333333  555554310                       11    33457999999999999999988765


Q ss_pred             c
Q psy8850         376 L  376 (397)
Q Consensus       376 ~  376 (397)
                      .
T Consensus       463 ~  463 (465)
T 2yky_A          463 L  463 (465)
Confidence            4

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.84  E-value=7.7e-20  Score=173.59  Aligned_cols=330  Identities=15%  Similarity=0.087  Sum_probs=204.9

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|++.+++.+++.+..... . .+  + ...+...++.+.|+++.+.+.+.++|++||++|++.+++.....+.   
T Consensus        82 Gh~~p~v~~Ai~~q~~~l~~~~-~-~~--~-~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g  156 (473)
T 4e3q_A           82 GFDHKGLIDAAKAQYERFPGYH-A-FF--G-RMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEG  156 (473)
T ss_dssp             CSCCHHHHHHHHHHHHHCCCCC-C-CT--T-EEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHhccccc-c-cc--c-ccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence            4568999999999998732111 1 11  1 1123455688889999877667899999999999999996543221   


Q ss_pred             -cCCCEEEEcCCCChhh-HHHHHHHhhC-----C---cEEEEeccC------CCCCC-------CHHHHHHHhc----CC
Q psy8850          84 -KRGKHIITVQTEHKSV-LDSIRKLEND-----G---FRVTYLKPK------NNGLI-------TLSQLEEKIC----SD  136 (397)
Q Consensus        84 -~~g~~vl~~~~~~~s~-~~~~~~~~~~-----g---~~v~~v~~~------~~~~~-------d~~~l~~~i~----~~  136 (397)
                       ..+.+|+....+|++. ..++......     +   .....++..      ..+..       ..+++++.+.    ++
T Consensus       157 ~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~  236 (473)
T 4e3q_A          157 KPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADT  236 (473)
T ss_dssp             CTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             CCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCc
Confidence             2235677666666554 4333322110     0   123333322      11111       1234555543    35


Q ss_pred             ceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCC-CCc
Q psy8850         137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGP-KGI  205 (397)
Q Consensus       137 ~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~  205 (397)
                      +.+|+++.++...|.+.|    ++++.++|++||+++|+|+++.. |..    ..+.....+|+++++  | +.|+ ..+
T Consensus       237 iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~~Pl  314 (473)
T 4e3q_A          237 IAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGFFPM  314 (473)
T ss_dssp             EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTSSCC
T ss_pred             eEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhc--ccccCCCCCc
Confidence            789999999999998876    79999999999999999999873 222    112223468999988  9 6554 568


Q ss_pred             eEEEEecCCCCcccccccc-CCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CcEE
Q psy8850         206 GALYIRRNPRTRIEAQIHG-GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI---EEIY  281 (397)
Q Consensus       206 g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~  281 (397)
                      |+++++++..+.+...... .....+.+.+.. ...+++..++|+.+.+  +.+.++.+++.++|++.|++ +   +.+.
T Consensus       315 ~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gn-pla~Aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~-l~~~~~v~  390 (473)
T 4e3q_A          315 GAVILGPELSKRLETAIEAIEEFPHGFTASGH-PVGCAIALKAIDVVMN--EGLAENVRRLAPRFEERLKH-IAERPNIG  390 (473)
T ss_dssp             EEEEECHHHHHHHHHHHHHHSCCCCCCTTTTC-HHHHHHHHHHHHHHHH--SSHHHHHHHHHHHHHHHHHH-HTTSTTEE
T ss_pred             ccccccHHHHHHhccccccccccccCCCCCCC-cchhhhhhhhhhhhcc--ccHHHHHHHHHHHHHHHHHH-HhcCCCee
Confidence            9999998765554322110 111122333333 3444555578887765  45566777777778777766 4   3332


Q ss_pred             EeCCCCCCCCceEEEEecCC-------C-----hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEE
Q psy8850         282 INGDMNNRIPHNLNISFNFI-------E-----GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR  347 (397)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR  347 (397)
                      -+.    ..+.++-+.+...       +     ...+...+.  |+.+.+.                        ++.+|
T Consensus       391 ~vR----G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~------------------------g~~i~  442 (473)
T 4e3q_A          391 EYR----GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL------------------------GQSVV  442 (473)
T ss_dssp             EEE----EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE------------------------TTEEE
T ss_pred             EEe----ecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec------------------------CCEEE
Confidence            111    1134445554211       0     133444443  6665532                        37899


Q ss_pred             EeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         348 FTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      |+++..+|++++|+++++|.++++++.+
T Consensus       443 l~PPL~it~~eid~~~~~l~~al~~v~a  470 (473)
T 4e3q_A          443 LCPPFILTEAQMDEMFDKLEKALDKVFA  470 (473)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987643

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.77  E-value=6.3e-18  Score=170.89  Aligned_cols=327  Identities=10%  Similarity=0.052  Sum_probs=193.6

Q ss_pred             CCC-CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhh-c
Q psy8850           7 TPI-DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFY-K   83 (397)
Q Consensus         7 ~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~-~   83 (397)
                      +.. +|++.+++++++.+.. ....    .+. ..+...++.+.|+++.+.+ .+.++|++||++|++.+++...+.+ .
T Consensus       395 Gh~~~p~i~~Ai~~Q~~~l~-h~~~----~~~-~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~  468 (831)
T 4a0g_A          395 DPTFQAELAREMGYTAARFG-HVMF----PEN-VYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCV  468 (831)
T ss_dssp             CHHHHHHHHHHHHHHHHHHS-SCCC----TTE-ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhcc-cccc----ccc-CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHh
Confidence            344 7899999999987732 1111    011 1234457888899988744 4579999999999999999764323 1


Q ss_pred             c------------CCCEEEEcCCCCh-hhHHHHHHHhhC------------CcEE-------------EEeccCCCC---
Q psy8850          84 K------------RGKHIITVQTEHK-SVLDSIRKLEND------------GFRV-------------TYLKPKNNG---  122 (397)
Q Consensus        84 ~------------~g~~vl~~~~~~~-s~~~~~~~~~~~------------g~~v-------------~~v~~~~~~---  122 (397)
                      .            .+.+||.....|+ .+..++......            +..+             ..+++....   
T Consensus       469 ~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~  548 (831)
T 4a0g_A          469 DHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEI  548 (831)
T ss_dssp             TTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCC
T ss_pred             hcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCcccccc
Confidence            1            1345666666555 555444432110            1111             112222100   


Q ss_pred             ------CCC------------------HHHHHHHhc--------CCceEEEEecc-cCccccccc----HHHHHHHHHhc
Q psy8850         123 ------LIT------------------LSQLEEKIC--------SDTILVSVMLV-NNEIGVIQP----ILEIGELCRSK  165 (397)
Q Consensus       123 ------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~~~tG~~~~----l~~i~~l~~~~  165 (397)
                            .-+                  .++|++.+.        +++.+|+++.+ ++..|.+.+    +++|.++|++|
T Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~  628 (831)
T 4a0g_A          549 APEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNR  628 (831)
T ss_dssp             CSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHT
T ss_pred             ccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHc
Confidence                  001                  256777774        35789999986 899898776    89999999999


Q ss_pred             CcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCC-CCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850         166 GVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       166 gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
                      |+++|+|+++. +|...    .......+|++++|  | +.|+ ..+|+++++++..+.+.+..........+..+. +.
T Consensus       629 gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitls--K~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g-~P  705 (831)
T 4a0g_A          629 KIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFA--KLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSA-HA  705 (831)
T ss_dssp             TCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEEC--GGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTT-CH
T ss_pred             CCeEEEEcCccccccCCCchhhHhcCCCCcEEEEe--cccccCccCcEEEEECHHHHHHHhcccccccceeecCCcc-cH
Confidence            99999999887 32221    11122357888766  9 6553 357999999775444432110001112233333 44


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC---------
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRIL----FL----QKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------  301 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~----~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  301 (397)
                      ..+++..++|+.+.+.  .+.++..    .+    .+.+.+.+.+ .+.+..+...    +.++.+.+...         
T Consensus       706 la~Aaala~L~~i~~~--~l~~~~~~~~~~l~~~l~~~l~~~l~~-~~~v~~vrg~----Gl~~~iel~~~~~~~~~~~~  778 (831)
T 4a0g_A          706 MGCATAAKAIQWFKDP--ETNHNITSQGKTLRELWDEELVQQISS-HSAVQRVVVI----GTLFALELKADASNSGYASL  778 (831)
T ss_dssp             HHHHHHHHHHHHHHCT--TTCTTBCTTSSBBCCCSCHHHHHHHHH-STTEEEEEEE----TTEEEEEEC---------CH
T ss_pred             HHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCceeEeec----ccEEEEEEecCccccccchH
Confidence            5555555788877541  1222221    11    2234455655 5665444321    34555555321         


Q ss_pred             ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ....+...+.  |+.+.+.                        ++.|||+++..+++++|++++++|.++++++
T Consensus       779 ~a~~~~~~l~e~Gv~v~p~------------------------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l  828 (831)
T 4a0g_A          779 YAKSLLIMLREDGIFTRPL------------------------GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF  828 (831)
T ss_dssp             HHHHHHHHHHHTTEECCCB------------------------TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHCCcEEEec------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            1234555554  7777643                        2889999998899999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	397
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	1e-124
d1eg5a_	376	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	5e-82
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	1e-76
d1t3ia_	408	c.67.1.3 (A:) Probable cysteine desulfurase SufS {	3e-75
d1qz9a_	404	c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen	1e-32
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	3e-32
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	6e-30
d2bkwa1	382	c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe	3e-29
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	4e-29
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	1e-27
d1h0ca_	388	c.67.1.3 (A:) Alanine-glyoxylate aminotransferase	1e-25
d1vjoa_	377	c.67.1.3 (A:) Alanine-glyoxylate aminotransferase	4e-25
d2ch1a1	388	c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas	5e-24
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	3e-23
d1m32a_	361	c.67.1.3 (A:) 2-aminoethylphosphonate transaminase	8e-23
d1elua_	381	c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocyst	5e-22
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	4e-19
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	6e-19
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	6e-17
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	2e-16
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	8e-16
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	1e-13
d1bjna_	360	c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT	1e-11
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	2e-05
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	0.003
d1mdoa_	376	c.67.1.4 (A:) Aminotransferase ArnB {Salmonella ty	0.003

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score =  361 bits (927), Expect = e-124
 Identities = 254/387 (65%), Positives = 332/387 (85%), Gaps = 3/387 (0%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
           +DYSATTP+DPRV +KM+ ++ +   FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 6   LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 65

Query: 59  REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
           REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 66  REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 125

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
           + NG+I L +LE  +  DTILVS+M VNNEIGV+Q I  IGE+CR++G+I+H DA Q+VG
Sbjct: 126 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 185

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           K+ I++   KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL  
Sbjct: 186 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 245

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
           HQIVGMGEA+R+A+ EM  E++R+  L+ RL+NG+ + IEE+Y+NGD+ +  P+ LN+SF
Sbjct: 246 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI-KDIEEVYLNGDLEHGAPNILNVSF 304

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
           N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 305 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 364

Query: 359 IDFTIKLLKMKVKKLRELSPLWDMHKE 385
           ID+TI+L++  + +LR+LSPLW+M+K+
Sbjct: 365 IDYTIELVRKSIGRLRDLSPLWEMYKQ 391

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

 Score =  253 bits (647), Expect = 5e-82
 Identities = 146/377 (38%), Positives = 227/377 (60%), Gaps = 9/377 (2%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
            D +ATT +D RV+++MI + R ++GNP +  H  G  A   +EKAR +VA+++   P E
Sbjct: 5   FDNNATTRVDDRVLEEMIVFYREKYGNP-NSAHGMGIEANLHMEKAREKVAKVLGVSPSE 63

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           I +TS ATES N  +K  A  ++KR + IIT   EHK+VL++++ L   GF+V Y+   +
Sbjct: 64  IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS 123

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL--CRSKGVIFHCDAAQAVG 178
            G++ L +LE+ +  DT LVS+M  NNE+G IQP+ ++  +   ++K  + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
           KI  +++  +VD  SFSAHK +GPKG+G  YIR+     I   IHGGG E GLRSGT   
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNV 241

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
             IVG   A  +A  E+ E  K +  L+ +L +GLM      +I   +   +P+ L++SF
Sbjct: 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLM--NLGAHIITPLEISLPNTLSVSF 299

Query: 299 NFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
             I G +L  L++   I VS+ SACTS      +VL A+G +  +A  +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359

Query: 357 KEIDFTIKLLKMKVKKL 373
           +E+D+ +K ++  +  L
Sbjct: 360 EEVDYFLKKIEEILSFL 376

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score =  241 bits (615), Expect = 1e-76
 Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 29/390 (7%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +D +A+     +V+D    + R  +       H     A + +E  R   +  I A   E
Sbjct: 26  LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE 85

Query: 61  IIW-TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP 118
            +    G TE  NL      +   + G +II  Q EH + +   + L    G  +  +  
Sbjct: 86  ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 145

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
             +G + L  L       T L+++  V+N +G   P+ E+  L    G     D AQAV 
Sbjct: 146 NPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVM 205

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227
              +++Q    D   FS HK+YGP GIG LY++      +     GG             
Sbjct: 206 HHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTT 265

Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
                +   +GT  T  I+G+G A           +              +ES+ ++ + 
Sbjct: 266 WTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLY 325

Query: 284 GDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAH 343
           G  N       N+  +        +    IAV +G  C         ++           
Sbjct: 326 GPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMP------LMAYYN-----VP 374

Query: 344 SSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
           +  R ++  + T +E+D  +  L+ ++ +L
Sbjct: 375 AMCRASLAMYNTHEEVDRLVTGLQ-RIHRL 403

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score =  237 bits (605), Expect = 3e-75
 Identities = 88/393 (22%), Positives = 147/393 (37%), Gaps = 31/393 (7%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +D +AT+     V++K++ Y      N     H     A  A E  RN+VA+ I A    
Sbjct: 26  LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPR 85

Query: 61  I-IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-IRKLENDGFRVTYLKP 118
             ++T  ATE+ NL          K G  IIT   EH S L          G  + +++ 
Sbjct: 86  EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL 145

Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
                  L   +  +   T LV+V+ ++N +G + P  EI +L    G     DA Q+  
Sbjct: 146 DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAP 205

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227
              +++Q    D +  S HK+  P GIG LY +      +     GG             
Sbjct: 206 HYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT 265

Query: 228 ---EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284
               +   +GT A  + + +G A         E +              +  I ++ + G
Sbjct: 266 GELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYG 325

Query: 285 DMNNRIPHNLNISFNF----IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDE 340
                       SFN         + ++    IA+ SG  CT    +P + L        
Sbjct: 326 PNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCT----QPLHRLFD------ 375

Query: 341 LAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL 373
            A  S R ++  + T++EID  ++ L+  ++  
Sbjct: 376 -ASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

 Score =  124 bits (312), Expect = 1e-32
 Identities = 58/396 (14%), Positives = 123/396 (31%), Gaps = 50/396 (12%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
           +D ++        + +    +  ++GN   R+           E+  N +A LI A   E
Sbjct: 31  LDGNSLGARPVAALARAQAVIAEEWGNGLIRSW-NSAGWRDLSERLGNRLATLIGARDGE 89

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
           ++ T   + +    +  A      R      + TE  +   +   +      +       
Sbjct: 90  VVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFP-TDLYIAEGLADMLQQGYTL 148

Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
             + +  +L + I  DT +V +  VN + G +  +  +  L    G +   D A + G +
Sbjct: 149 RLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV 208

Query: 181 DINIQNYKVDLMSFSAHKI--YGPKGIGALYIRRNPRTRIEAQIHGGGHE---------- 228
            +++     D      +K    GP     +++       +   + G              
Sbjct: 209 PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRY 268

Query: 229 ------YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEE 279
                      GT     +  +     +        L+R       L+  L+E   +  E
Sbjct: 269 EPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHE 328

Query: 280 IYING--DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGC 337
           + +    +   R  H   +SF   EG +++ A+ D  V  G                   
Sbjct: 329 LTLVTPREHAKRGSH---VSFEHPEGYAVIQALIDRGV-IGDYR---------------- 368

Query: 338 NDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMKVKK 372
                   +RF      TT  E+   +++L   + +
Sbjct: 369 ----EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score =  124 bits (311), Expect = 3e-32
 Identities = 50/404 (12%), Positives = 101/404 (25%), Gaps = 71/404 (17%)

Query: 38  TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 97
             E     A    A++  AD  +  +  G + + N  +  A       G  ++  +  HK
Sbjct: 63  IHEGPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALV---SNGDLVLFDRNNHK 117

Query: 98  SVLDSIRKLENDGFRVTYLKPKNNG-----------------LITLSQLEEKICSDTILV 140
           SV +S   +               G                 L      E         +
Sbjct: 118 SVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRL 177

Query: 141 SVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ-------------NY 187
           +V+ +    G I    E+ +           D+A    +  I +                
Sbjct: 178 AVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPED 237

Query: 188 KVDLMSFSAHKIYGPKGIGALYIRRN----PRTRIEAQIHGGGHEYGLRSGTLATHQIVG 243
              ++  S HK        +   +++     + R     H         S +        
Sbjct: 238 PGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA 297

Query: 244 MGEAFRLARIEMKEEL-KRILFLQKRLYNGLME---------------------SIEEIY 281
           +     +   E   +L   +L         L++                       E++ 
Sbjct: 298 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMA 357

Query: 282 INGDMNNRIPHNLNISFNFIEGESLLM-------AIKDIAVSSGSACTS--ASLEPSYVL 332
            N D           ++         +           I   +G        +   +  L
Sbjct: 358 NNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYL 417

Query: 333 RALGCNDELA-HSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375
           R  G   E +  +SI F +    T  +++  I  L    + + E
Sbjct: 418 RDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEE 461

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score =  118 bits (295), Expect = 6e-30
 Identities = 68/422 (16%), Positives = 115/422 (27%), Gaps = 60/422 (14%)

Query: 8   PIDPRVVDKMIPYLRVQFGNPASRNHIYG-------WTAEKAIEKARNEVAQLIYADPRE 60
           P         I  L     N  S +           +   +     +++  +L   D   
Sbjct: 35  PFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYD--Y 92

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRG--KHIITVQTEHKSVLDSI--------RKLENDG 110
           II       + N+       + +K G  K+ + +   H     +           +  + 
Sbjct: 93  IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK 152

Query: 111 FRVTYLKPKNNGLITLSQLEEKI---CSDTILVSVMLVNNEIGVIQP-----ILEIGELC 162
              +       G   + +L+E I    +D I+  V  V       QP     + E+ E+ 
Sbjct: 153 AFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA 212

Query: 163 RSKGVIFHCDAAQAVGKIDINIQNYK-----------------VDLMSFSAHKIYGPKGI 205
           +  G+    D+A+                               D ++ SA K       
Sbjct: 213 KQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG 272

Query: 206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 265
           G + IR N      A+      E  +  G LA   +  M +       E    L   +  
Sbjct: 273 GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEY--LHYRIGQ 330

Query: 266 QKRLYNGLMESIEEI-------YINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG 318
            K L + L E+   I        +  D    +P      F      + L         SG
Sbjct: 331 VKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYL------ESG 384

Query: 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMKVKKLRELS 377
                          A G         +R TI R   T   +D+    L    +K   L 
Sbjct: 385 VRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLK 444

Query: 378 PL 379
            L
Sbjct: 445 GL 446

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  115 bits (287), Expect = 3e-29
 Identities = 39/395 (9%), Positives = 96/395 (24%), Gaps = 53/395 (13%)

Query: 7   TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 66
             +   V   +              +  +    ++ ++  R        +  +  +    
Sbjct: 12  IILSGAVQKALDVPS------LGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGS 65

Query: 67  ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITL 126
            T   ++             K+++ V T   S   +                K    + L
Sbjct: 66  GTLGWDIFASNFILSKAP-NKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPL 124

Query: 127 SQLEEKICSDTILVSVMLVN---NEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 183
             + EK+  ++     +        +      +       S    F  DA  ++G  +  
Sbjct: 125 ELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE 184

Query: 184 IQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH--------------- 227
              + VD    ++ K I  P G+                   G                 
Sbjct: 185 FDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIME 244

Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKE-ELKRILFLQKRLYNGLMESIEEIYI 282
                 G    T     I  +  A +    E           +     + L+  ++   +
Sbjct: 245 NYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSV 304

Query: 283 NGDMNNRIPHNLNISFNFIEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDE 340
           +   +N   H L  +    +   ++  +K   + ++ G                     +
Sbjct: 305 SRYPSNMSAHGLT-AVYVADPPDVIAFLKSHGVVIAGGIHK------------------D 345

Query: 341 LAHSSIRF-TIGRFTTEKEIDFTIKLLKMKVKKLR 374
           +    IR   +G     K + +      +    L+
Sbjct: 346 IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score =  115 bits (289), Expect = 4e-29
 Identities = 59/408 (14%), Positives = 112/408 (27%), Gaps = 58/408 (14%)

Query: 5   ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREI-- 61
             T  D  V   M   +   + +       Y  +A   I+    N VA L +A   +   
Sbjct: 62  CQTWDDENVHKLMDLSINKNWIDK----EEYPQSAA--IDLRCVNMVADLWHAPAPKNGQ 115

Query: 62  ---IWTSGATESNNLAIKGAAHFYKKRGKH--------IITVQTEHKSVLDSIRKLENDG 110
                T G++E+  L        ++KR +          +             R  + + 
Sbjct: 116 AVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVEL 175

Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP------ILEIGELCRS 164
             +          +   ++ E    +TI V         G  +        L+  +    
Sbjct: 176 REIPM--RPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTG 233

Query: 165 KGVIFHCDAAQAVGKIDINIQNYK-------VDLMSFSAHKI-YGPKGIGALYIRR---- 212
             +  H DAA           +         V  +S S HK    P G G +  R     
Sbjct: 234 IDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEAL 293

Query: 213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNG 272
                      GG       + +    Q++     F     E   +++   +        
Sbjct: 294 PQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLAD 353

Query: 273 LMESIE--EIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA---VSSGSACTSASLE 327
            +  +   E    G  +  IP    + F   +GE     + D++      G         
Sbjct: 354 EIAKLGPYEFICTGRPDEGIP---AVCFKLKDGEDPGYTLYDLSERLRLRGWQV------ 404

Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375
           P++ L     +       +R    R       +  ++  K  +K L +
Sbjct: 405 PAFTLGGEATD----IVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 448

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score =  110 bits (273), Expect = 1e-27
 Identities = 48/369 (13%), Positives = 104/369 (28%), Gaps = 40/369 (10%)

Query: 2   DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
           DYS    + P+++D M            +     G+  +    KA   + +L+     ++
Sbjct: 7   DYSV--GMHPKILDLMAR---------DNMTQHAGYGQDSHCAKAARLIGELLERPDADV 55

Query: 62  IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121
            + SG T++N +A   A   ++      +   + H++        +         K +  
Sbjct: 56  HFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVA 115

Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVG 178
            + +              +  +    E+G         +I   C+  G+    D A+   
Sbjct: 116 DIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLAS 175

Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
            +   + +  +  ++      Y                  +A      H    R   +A 
Sbjct: 176 ALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAK 235

Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
             ++G+     +      E       +   L  GL      +          P   N  F
Sbjct: 236 GWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLA--------WPSASNQLF 287

Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
             +E                     A L   + +  +    +     +R      T EKE
Sbjct: 288 PILENT-----------------MIAELNNDFDMYTVEPLKD-GTCIMRLCTSWATEEKE 329

Query: 359 IDFTIKLLK 367
               +++LK
Sbjct: 330 CHRFVEVLK 338

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 1e-25
 Identities = 40/391 (10%), Positives = 106/391 (27%), Gaps = 56/391 (14%)

Query: 7   TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTS 65
           + + PR++                          + +++ +  +  +    +P  ++ + 
Sbjct: 28  SNLPPRIMAAG---------GLQMIGS-MSKDMYQIMDEIKEGIQYVFQTRNPLTLVISG 77

Query: 66  GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
               +   A+        + G   +                          K        
Sbjct: 78  SGHCALEAAL----VNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTL 133

Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 185
               E       +L+ +    +  GV+QP+   GELC     +   D+  ++G   + + 
Sbjct: 134 QEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMD 193

Query: 186 NYKVDLMSFSAHKIYGPKGIGALYIRRNPR-----------------TRIEAQIHGGGHE 228
              +D++   + K        +L    +                    +  A   G   +
Sbjct: 194 RQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQ 253

Query: 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288
             +   T+    +  + E+  L   +  E   R         +G ++++       D   
Sbjct: 254 PRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPAL 313

Query: 289 RIPHNLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHS 344
           R+P    ++     +   ++  + D   I +  G                          
Sbjct: 314 RLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGP-------------------STGK 354

Query: 345 SIRF-TIGRFTTEKEIDFTIKLLKMKVKKLR 374
            +R   +G   T + +D   + L+  ++   
Sbjct: 355 VLRIGLLGCNATRENVDRVTEALRAALQHCP 385

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

 Score =  103 bits (256), Expect = 4e-25
 Identities = 53/384 (13%), Positives = 116/384 (30%), Gaps = 52/384 (13%)

Query: 7   TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTS 65
           +   P V+  M         N +   H         +++ ++ +  +    +P  I  + 
Sbjct: 27  SNAHPSVLQAM---------NVSPVGH-LDPAFLALMDEIQSLLRYVWQTENPLTIAVSG 76

Query: 66  GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
             T +    I        + G  ++     +                 T  KP       
Sbjct: 77  TGTAAMEATIAN----AVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSL 132

Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 185
                        +++++      G  QP+  +GELCR  G +   D   ++G + I + 
Sbjct: 133 EELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLD 192

Query: 186 NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL-----------RSG 234
            + VDL    + K  G     + +   +       +       + L              
Sbjct: 193 AWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERV 252

Query: 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI--YINGDMNNRIPH 292
              T  I          R+  +E L       ++    L E +E+I   ++ +   R+P 
Sbjct: 253 YHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPT 312

Query: 293 NLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348
              +   + ++G+++   + +   I V  G                      LA    R 
Sbjct: 313 LTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGE-------------------LAGKVWRV 353

Query: 349 -TIGRFTTEKEIDFTIKLLKMKVK 371
             +G  + ++ +D  I  L+  ++
Sbjct: 354 GLMGFNSRKESVDQLIPALEQVLR 377

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

 Score =  100 bits (248), Expect = 5e-24
 Identities = 43/396 (10%), Positives = 108/396 (27%), Gaps = 59/396 (14%)

Query: 7   TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 66
           +    RV+  M   +             +     + +++ ++ +  +   + R  +  SG
Sbjct: 26  SNCSKRVLTAMTNTV----------LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSG 75

Query: 67  -ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
            A       +        +     +       +               T   P +     
Sbjct: 76  SAHAGMEAMLSNLLEEGDRV----LIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSL 131

Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 185
            +            + +   ++  G++QP+  +G++C     +   DA  ++  +   + 
Sbjct: 132 ETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMD 191

Query: 186 NYKVDLMSFSAHKIYGPKGIGALYIRRNPR-----------------TRIEAQIHGGGHE 228
            +++D +   A K+ G                                 +     G   E
Sbjct: 192 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE 251

Query: 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288
                 T+A++ I  + EA      E  E   +      ++    +  +       D  +
Sbjct: 252 PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRH 311

Query: 289 RIPHNLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHS 344
           R+P    I     ++   +     +   + V  G                          
Sbjct: 312 RLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGP-------------------TFGK 352

Query: 345 SIRF-TIGRFTTEKEIDFTIKLLKMKVKKLRELSPL 379
           + R   +G  +T ++I F +   K   + L+   P 
Sbjct: 353 AWRVGIMGECSTVQKIQFYLYGFK---ESLKATHPD 385

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 98.8 bits (245), Expect = 3e-23
 Identities = 50/417 (11%), Positives = 104/417 (24%), Gaps = 47/417 (11%)

Query: 8   PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE-------KAIEKARNEVAQLIYADPRE 60
           P      D  I  L        +++               ++       V  +       
Sbjct: 34  PFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALAESVKNIFGYQ--Y 91

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGK----------HIITVQTEHKSVLD--SIRKLEN 108
            I T     +  + I       ++             +     T+  S ++  ++R +  
Sbjct: 92  TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYI 151

Query: 109 DGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEIGVIQPILE----IGE 160
                T ++    G   L  LE  I     ++   +   + +N  G     L     +  
Sbjct: 152 KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYS 211

Query: 161 LCRSKGVIFHCDAAQAVGKIDINIQNYK-----------------VDLMSFSAHKIYGPK 203
           + +   +    D+A+         Q                     D+++ SA K     
Sbjct: 212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP 271

Query: 204 GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL 263
             G L ++ +    +  +                         A  L      + L   +
Sbjct: 272 MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI 331

Query: 264 FLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTS 323
              + L +GL E        G     +     +     +         ++   +G     
Sbjct: 332 AQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVE 391

Query: 324 ASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMKVKKLRELSPL 379
                       G         +R TI R T T+  +DF I+  K   +    +  L
Sbjct: 392 IGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGL 448

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 96.4 bits (238), Expect = 8e-23
 Identities = 43/381 (11%), Positives = 91/381 (23%), Gaps = 52/381 (13%)

Query: 7   TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWT 64
                 V + M+                        +E+ R ++  L  A      ++  
Sbjct: 9   LTTSRTVKEAMLFDSC----------TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQ 58

Query: 65  SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 124
              + +    +  A        K +I     + + +  +  L                 +
Sbjct: 59  GSGSYAVEAVLGSALGPQD---KVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDV 115

Query: 125 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 184
                          ++++      G++ PI E+G L    G  +  DA  + G I ++I
Sbjct: 116 QAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDI 175

Query: 185 QNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIE-----------AQIHGGGHEYGLR 232
               +D +  SA+K   G  G   +  R       +           AQ       +G  
Sbjct: 176 AALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKW 235

Query: 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292
             T  TH ++   +A +    E     +   + Q +                D     P 
Sbjct: 236 RFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPI 295

Query: 293 NLNISFNFIEGESL-----LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347
                               +  +   +  G                            R
Sbjct: 296 ITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS--------------------QSDCFR 335

Query: 348 FTIGRFTTEKEIDFTIKLLKM 368
                     +I   +  ++ 
Sbjct: 336 IGNIGEVYAADITALLTAIRT 356

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Length = 381

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

 Score = 94.6 bits (233), Expect = 5e-22
 Identities = 55/408 (13%), Positives = 127/408 (31%), Gaps = 67/408 (16%)

Query: 1   MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
            ++     +    ++ +         N    +       ++ I + R  +A+    DP  
Sbjct: 11  FNFGGQGILPTVALEAITAMYGYLQENG-PFSIAANQHIQQLIAQLRQALAETFNVDPNT 69

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDG---FRVTYLK 117
           I  T   T   ++ +         +G  I+    EH  ++  ++ +       +R   + 
Sbjct: 70  ITITDNVTTGCDIVLW---GLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVA 126

Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL----CRSKGVIFHCDA 173
              N     + L   +   T LV +  +    G + P+ EI  +      +  V    D 
Sbjct: 127 ATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 186

Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGG------ 226
           AQ+ G + ++    +VD  +F+ HK +    G+G LYI  +    I     G        
Sbjct: 187 AQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGA 246

Query: 227 -----------HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 275
                        + + +     +  +         +   +E  + I    + L+ G + 
Sbjct: 247 KGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRG-LN 305

Query: 276 SIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAIKD--IAVSSGSACTSASLEPSY 330
            +  ++       +      +SF     +   +++  +++  I + + +           
Sbjct: 306 QLPHVHCLATSAPQAG---LVSFTVDSPLGHRAIVQKLEEQRIYLRTIA----------- 351

Query: 331 VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSP 378
                          IR      T E+EI+  +  L        +  P
Sbjct: 352 -----------DPDCIRACCHYITDEEEINHLLARLA-------DFGP 381

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.5 bits (213), Expect = 4e-19
 Identities = 39/334 (11%), Positives = 92/334 (27%), Gaps = 32/334 (9%)

Query: 64  TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 123
              AT  +           + + K+II  + + KS   S+     +   +  +   +   
Sbjct: 118 VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELR 177

Query: 124 ITLSQLEEKICSDT----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG- 178
             L  +E KI        + +          V   + E+  +C +  +    + A  +  
Sbjct: 178 TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS 237

Query: 179 -----KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEYGL 231
                 I    +  ++D    S  K    P G   +          I     G       
Sbjct: 238 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRAS---- 293

Query: 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY---INGDMNN 288
                     + +             +L +         +  ++ + E +   +    +N
Sbjct: 294 ------ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN 347

Query: 289 RIPHNLNI----SFNFIEGESLLMAIKDIAVSSGSACTSASLEP--SYVLRALGCN-DEL 341
            I   + +      +      L   +    VS   A    +++    +  R    + D  
Sbjct: 348 PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNY 407

Query: 342 AHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE 375
             + +          +++D  IK L   +  +R+
Sbjct: 408 PCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 84.9 bits (208), Expect = 6e-19
 Identities = 35/373 (9%), Positives = 88/373 (23%), Gaps = 53/373 (14%)

Query: 6   TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTS 65
                P V   ++           S      +  ++   + + +  ++   D  E+    
Sbjct: 12  IAGASPEVAQALVK---------HSSGQAGPYGTDELTAQVKRKFCEIFERD-VEVFLVP 61

Query: 66  GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
             T +N L +            +I      H +  +                      + 
Sbjct: 62  TGTAANALCLSAMTP----PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLD 117

Query: 126 L----------SQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
           +                     + ++       I  +  I  IG++C+S  +  H D ++
Sbjct: 118 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSR 177

Query: 176 AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 235
               +     +            +        +           +      +        
Sbjct: 178 FANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHL 237

Query: 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295
            +  + +       L         ++     +RL  GL          G +        N
Sbjct: 238 SSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-------LGGVEVLGGTEAN 290

Query: 296 ISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCN-DELAHSSIRFTIGRFT 354
           I F      +++ A+                         G   D    + +RF     T
Sbjct: 291 ILF-CRLDSAMIDALLK--------------------AGFGFYHDRWGPNVVRFVTSFAT 329

Query: 355 TEKEIDFTIKLLK 367
           T +++D  +  ++
Sbjct: 330 TAEDVDHLLNQVR 342

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 79.8 bits (196), Expect = 6e-17
 Identities = 55/359 (15%), Positives = 109/359 (30%), Gaps = 49/359 (13%)

Query: 61  IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------SIRKLENDGFRVT 114
           I+ T     + NL          K G+++        +         +   +  D     
Sbjct: 93  IVPTHQGRGAENLLS----QLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDA 148

Query: 115 YLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEIGVIQPILE----IGELCRSKG 166
            L     G I L++L   I      +   + + +  N  G     +     + E+  + G
Sbjct: 149 SLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYG 208

Query: 167 VIFHCDAAQAVGKIDINIQNYK-----------------VDLMSFSAHKIYGPKGIGALY 209
           +    DA + V       +                     D  + S  K       G L 
Sbjct: 209 IKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLC 268

Query: 210 IRRN---PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFL 265
           +         +    ++ G   YG  +G       +G+ EA +   IE   ++++ +   
Sbjct: 269 MNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDK 328

Query: 266 QKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSAS 325
            +     ++E      +  D     PH     F     +SL  +   I + +G       
Sbjct: 329 LREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFP---AQSLAAS---IYMETGVRSMERG 382

Query: 326 LEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDF---TIKLLKMKVKKLRELSPLW 380
           +  +   +  G N      ++R TI R   T   +D     I  L    + +R L+ ++
Sbjct: 383 IVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVY 441

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 78.4 bits (192), Expect = 2e-16
 Identities = 47/315 (14%), Positives = 98/315 (31%), Gaps = 28/315 (8%)

Query: 64  TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 123
           T  +T  +      AA         +I     HKS + ++  +  +   V  +   +   
Sbjct: 135 TPISTGMSISLCLSAARKKYGS-NVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVY 193

Query: 124 ITLSQLEEKICSD-----TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV- 177
           + +  +E  I  +        V   L          I+EI ++C +  +    + A A+ 
Sbjct: 194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ 253

Query: 178 ----GKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 232
                +       Y+VD +  S+ K +  P G G +Y       +  +  + G       
Sbjct: 254 NNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPV 313

Query: 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292
             TL +   +G             E +K     +K L   L + + +      ++   P 
Sbjct: 314 VNTLVSLLSMG--------SKNYLELVKNQKNSKKLLDELLND-LSKKTGGKFLDVESPI 364

Query: 293 NLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 352
              IS N  +   +   + ++ V +G      +                 H  I      
Sbjct: 365 ASCISVN-SDPVEIAAKLYNLRV-TGPRGIKKTDHFGNCYLGTY-----THDYIVMNAAI 417

Query: 353 FTTEKEIDFTIKLLK 367
               ++I  ++  L+
Sbjct: 418 GVRTEDIVNSVSKLE 432

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 76.0 bits (185), Expect = 8e-16
 Identities = 44/351 (12%), Positives = 107/351 (30%), Gaps = 30/351 (8%)

Query: 29  ASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88
            +   +         +   N++ + +  D      T+GA E+    +   A    K+   
Sbjct: 35  CTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLA----KKDAW 88

Query: 89  IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEE-----KICSDTILVSVM 143
           ++  +  H S      +       +       +  IT     +     K   + +L  + 
Sbjct: 89  VVMDENCHYSS-YVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 147

Query: 144 LVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPK 203
             +   G +  + +I ++C    V    + A A+G++ ++++    D +  S HK     
Sbjct: 148 YPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAAS 207

Query: 204 GIGALYIRRNPRTR--IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKR 261
           G   +   +       +         E  L   T     I+ +  +F     E  +    
Sbjct: 208 GPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP-HVRERIKRWDE 266

Query: 262 ILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSAC 321
            +   +R    + +      +        PHN ++ F   E    +          G   
Sbjct: 267 EVEKARRFAAEMEK------LGIKQLGDNPHNHDLMFFHAEVLYEI----SKKAKGGRFF 316

Query: 322 TSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK 372
               L+   +        +   +          +++E+D+ +   K  ++K
Sbjct: 317 LYRELKSRKIHGI-----KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 362

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 69.9 bits (170), Expect = 1e-13
 Identities = 50/410 (12%), Positives = 110/410 (26%), Gaps = 77/410 (18%)

Query: 17  MIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI---------IWTSGA 67
           M+  +          +        +      + + +++      +         +    A
Sbjct: 89  MLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSA 148

Query: 68  TESNNLAIKGAAHFYKKRGKH---------------IITVQTEHKSVLDSIRKLENDGFR 112
           +E+  +A+  A     +R +                       H SV  +       G +
Sbjct: 149 SEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGL---IGGVK 205

Query: 113 VTYLKPKNNGLITLSQLEEKICSDT------ILVSVMLVNNEIGVIQPILEIGELCRSKG 166
           +  +       +  S L+E +  D         V   L          +LE+G +C  + 
Sbjct: 206 LKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEED 265

Query: 167 VIFHCDAAQAVGKIDINIQNYK------VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA 220
           +  H DAA A          +        D  +F+ HK        +    +       A
Sbjct: 266 IWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGA 325

Query: 221 QIHGGGHEYGLRSG----TLATHQIVGMGEAFRLARIEM----------KEELKRILFLQ 266
                 +      G    T   H  + +G  FR  ++            +  +++ + L 
Sbjct: 326 FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLS 385

Query: 267 KRLYNGLMESIE-EIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSA-CTSA 324
                 +++    E+     +         + F     + L  A+ +   S+        
Sbjct: 386 HEFEAFVLQDPRFEVCAEVTLG-------LVCFRLKGSDGLNEALLERINSARKIHLVPC 438

Query: 325 SLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKL 373
            L   +VL              RF I  R      +    + ++    +L
Sbjct: 439 RLRGQFVL--------------RFAICSRKVESGHVRLAWEHIRGLAAEL 474

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} Length = 360

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 33/305 (10%), Positives = 77/305 (25%), Gaps = 15/305 (4%)

Query: 7   TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE--KAIEKARNEVAQLIYA-DPREIIW 63
             +   V+ +    LR   G   S   +     E  +  E+A  +   L+      ++++
Sbjct: 10  AMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLF 69

Query: 64  TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 123
             G           A        K              +I++ +       +        
Sbjct: 70  CHGGGR----GQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDG 125

Query: 124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 183
           +   +   +         +    NE      I E         V+   D +  +    I+
Sbjct: 126 LRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPID 183

Query: 184 IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEY----GLRSGTLATH 239
           +  Y V       +       I  +      +  I                + +      
Sbjct: 184 VSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFA 243

Query: 240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299
             +       L       E+ +I   +  L  G++++ +    +    NR    +N+ F 
Sbjct: 244 WYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNR--SRMNVPFQ 301

Query: 300 FIEGE 304
             +  
Sbjct: 302 LADSA 306

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 51/338 (15%), Positives = 99/338 (29%), Gaps = 25/338 (7%)

Query: 8   PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGA 67
           P  P +++ +   L         R   Y   A   +   R  +A+    +P  ++ TSGA
Sbjct: 38  PPPPFLLEAVRRAL--------GRQDQYAPPA--GLPALREALAEEFAVEPESVVVTSGA 87

Query: 68  TESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLS 127
           TE+    +          G  ++ ++      L            V          + LS
Sbjct: 88  TEA----LYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLS 143

Query: 128 QLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDINI 184
            LE+ +   T  + +    N  G++     +  I  L R+  +    D            
Sbjct: 144 ALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP 203

Query: 185 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 244
           +  +      +       K + A   R       +  +          S +  T    G+
Sbjct: 204 RRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGV 263

Query: 245 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 304
            EA +LAR E   E  R  + ++R           + +       +P         + G 
Sbjct: 264 AEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVY------VPEGTYFLMAELPGW 317

Query: 305 SLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDE 340
                +++  +A+   SA             A    +E
Sbjct: 318 DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEE 355

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 44/381 (11%), Positives = 103/381 (27%), Gaps = 57/381 (14%)

Query: 7   TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 66
           T     +   M    + + G+       YG   +  I +     A+    +    ++   
Sbjct: 10  TKPTEEMRKAMA---QAEVGDDV-----YG--EDPTINELERLAAETFGKE--AALFVPS 57

Query: 67  ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITL 126
            T  N ++I              + ++ +       +  +      + +  P  NG +  
Sbjct: 58  GTMGNQVSIMAHTQRG-----DEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDP 112

Query: 127 SQLEEKICS------DTILVSVMLVNNEIGV----IQPILEIGELCRSKGVIFHCDAAQA 176
             + + I         T L+++   +N  G     ++ I EI  + +  G+  H D A+ 
Sbjct: 113 DDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 172

Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 236
                 +    K       +      KG+ A         R   +      +        
Sbjct: 173 FNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQ 232

Query: 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 296
           A                     L +++   K  +        ++   G   N      N+
Sbjct: 233 AGV-----------LAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNM 281

Query: 297 SFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
                +   +          +      A      +  A+        + IR    +  + 
Sbjct: 282 VILRTDNLKV----------NAHGFIEALRNSGVLANAVS------DTEIRLVTHKDVSR 325

Query: 357 KEIDFTIKLLKMKVKKLRELS 377
            +I+  + + +   K  R+ S
Sbjct: 326 NDIEEALNIFE---KLFRKFS 343

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 17/220 (7%)

Query: 17  MIPYLRVQFGNPASRNHI----YGW-TAEKAIEKARNEVAQLIYADPREIIWTSGATESN 71
            +P+ R   G             GW T     ++      +L     +  +  S AT   
Sbjct: 2   FLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGN--QYAVAVSSATAGM 59

Query: 72  NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEE 131
           ++A+          G  +IT      S L+ I  +      V     ++  ++T   +E 
Sbjct: 60  HIALMALGI---GEGDEVITPSMTWVSTLNMI--VLLGANPVMVDVDRDTLMVTPEHIEA 114

Query: 132 KICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191
            I   T  +   +  +  G    +  I  L    G+    DAA A G             
Sbjct: 115 AITPQTKAI---IPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGT 171

Query: 192 --MSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEY 229
              SF A K       G +             +   G   
Sbjct: 172 AIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGV 211

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	397
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	100.0
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	100.0
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	100.0
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	100.0
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	100.0
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	100.0
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	100.0
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	100.0
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	100.0
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	100.0
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	100.0
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	100.0
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	100.0
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	100.0
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	100.0
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	100.0
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	100.0
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	100.0
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.98
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.98
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.97
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.97
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.97
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.97
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.97
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.97
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.96
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.96
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.96
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.96
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.96
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.96
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.96
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.95
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.95
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.95
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.95
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.94
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.94
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.94
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.94
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.94
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.94
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.94
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.93
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.93
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.93
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.92
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.92
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.92
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.92
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.92
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.92
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.92
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.92
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.91
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.91
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.91
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.9
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.9
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.9
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.9
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.9
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.9
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.89
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.89
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.89
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.89
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.88
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.88
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.87
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.87
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.85
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.85
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.85
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.84
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.84
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.83
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.82
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.81
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.8
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.8
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.79
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.77
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.71
d1vb5a_	274	Putative eIF-2B subunit 2-like protein PH0440 {Pyr	80.64

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.5e-53  Score=395.12  Aligned_cols=384  Identities=66%  Similarity=1.118  Sum_probs=345.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhh--ccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA   78 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l   78 (397)
                      ||+++++|+++.|+++|.+++..  .++||++..|..++...+.++++|+.+++++|+++++|++++|+|++++.++.++
T Consensus         6 lD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~   85 (391)
T d1p3wa_           6 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGA   85 (391)
T ss_dssp             CBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred             eeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhh
Confidence            79999999999999999998853  5679988778888888899999999999999999999999999999999999887


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      .....++|++|++++++|+++...+..+...|.+++.+|.++++.+|+++++++++++|++|++++++|+||.+.|+++|
T Consensus        86 ~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I  165 (391)
T d1p3wa_          86 ANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAI  165 (391)
T ss_dssp             HHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHH
T ss_pred             hhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHH
Confidence            65445789999999999999999888877779999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
                      +++||+||+++++|++|+.|..++|+...++|++++|+||++|+.|+|+++++++......+...+|.....+..++.+.
T Consensus       166 ~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~  245 (391)
T d1p3wa_         166 GEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV  245 (391)
T ss_dssp             HHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCH
T ss_pred             HHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCceEEEEEecchhcccCCcccCCccccCcccCcchh
Confidence            99999999999999999999999999999999999999998899999999999988888888888887777788889998


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCCcEeccc
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG  318 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g  318 (397)
                      ....++..+++...+......+++.++.+++.+.|.+ +++..+......+.+.++.+.++..+...+...|.++.++.|
T Consensus       246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~v~~G  324 (391)
T d1p3wa_         246 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSG  324 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-STTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEECBCC
T ss_pred             hhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHh-hcCeeecccccccCceEEEEEeCCCChHHHHHHhCCCEEEcc
Confidence            8888888888877776777788889999999999998 888777766666667888889998889999999999999999


Q ss_pred             CccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhcCccchhhhc
Q psy8850         319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRELSPLWDMHKE  385 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~  385 (397)
                      .+|.++...++..++.+|+......+.||||++.++|.+|||+++++|+++++++|+++|.|.|+|+
T Consensus       325 ~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~~~~  391 (391)
T d1p3wa_         325 SACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ  391 (391)
T ss_dssp             CC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHCC
T ss_pred             ccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhChHHHhhcC
Confidence            9999888888899999999887777899999999999999999999999999999999999999985

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-47  Score=356.55  Aligned_cols=359  Identities=23%  Similarity=0.336  Sum_probs=315.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      ||+++++++|+.|++++.+++...++||+++.|..+....+.++++|+.+++++|+. ++++++++|+|+|++.++.++.
T Consensus        26 ld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~  105 (405)
T d1jf9a_          26 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWG  105 (405)
T ss_dssp             CCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHH
T ss_pred             EeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhccc
Confidence            799999999999999999999988899987678888888889999999999999964 5789999999999999988766


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      .....+|++|++++.+|++...++..+.+ .|++++.+|.+++|.+|+++++++++++|++|++++.+|.+|.+.|+++|
T Consensus       106 ~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i  185 (405)
T d1jf9a_         106 NSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEM  185 (405)
T ss_dssp             HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHH
T ss_pred             ccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHh
Confidence            54558899999999999999999988754 49999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccC-------------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG-------------  225 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~-------------  225 (397)
                      .++||++|+++++|++|+.|..++|+..+++|++++|+||++||.|+|+++++++....+.+...++             
T Consensus       186 ~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (405)
T d1jf9a_         186 ITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTT  265 (405)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCE
T ss_pred             hhHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCCceeeeechhhhcccCcccccccccCccccccccc
Confidence            9999999999999999999999999999999999999999889999999999987655554433322             


Q ss_pred             --CccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCC
Q psy8850         226 --GHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE  302 (397)
Q Consensus       226 --~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (397)
                        ....+++.|+++...++++.++++++.+ +++.+.++...+.+++.+.++. ++......+. .+ .+++.+.+++.+
T Consensus       266 ~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~-~~~~~~~~~~-~r-~~ivsf~~~~~~  342 (405)
T d1jf9a_         266 WTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQ-NR-LGVIAFNLGKHH  342 (405)
T ss_dssp             ECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEESCT-TC-CSEEEEEETTCC
T ss_pred             cccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhc-CCcccccCCc-Cc-CcEEEEEcCCCC
Confidence              1245678899999999999999998876 6899999999999999999998 8887777653 33 457788888888


Q ss_pred             hHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       303 ~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.++...|.  ||.++.|.+|+.      ..+...+..     +.+|||++.++|.+|||+++++|+++.+.+
T Consensus       343 ~~~~~~~L~~~gI~v~~G~~c~~------~~~~~~~~~-----g~iRiS~~~ynt~eDid~l~~~l~~i~r~~  404 (405)
T d1jf9a_         343 AYDVGSFLDNYGIAVRTGHHCAM------PLMAYYNVP-----AMCRASLAMYNTHEEVDRLVTGLQRIHRLL  404 (405)
T ss_dssp             HHHHHHHHHHTTEECEEECTTCH------HHHHHTTCS-----CEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCcEEEccchhhh------hHHHhcCCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            888877775  999999998875      566666654     789999999999999999999999887754

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=5.1e-46  Score=348.77  Aligned_cols=360  Identities=25%  Similarity=0.355  Sum_probs=313.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~   79 (397)
                      |||++++++|+.|++++.+++...++||+++.|..+....+.++++|+.+++++|++ ++.+++++++++++++++.++.
T Consensus        26 ld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~  105 (408)
T d1t3ia_          26 LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWG  105 (408)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH
T ss_pred             eeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhcc
Confidence            799999999999999999999998899988678888888899999999999999996 5779999999999999988765


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHh-hCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      ....++|++|++++.+|++...++.... +.|.++..+|.+.++..+.+.++++++++|++|++++.+|.+|.+.|+++|
T Consensus       106 ~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i  185 (408)
T d1t3ia_         106 MNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEI  185 (408)
T ss_dssp             HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred             ccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccCCCceEEEEecccccccccCcHHHH
Confidence            4444789999999999999999988654 449999999999889899999999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc-----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------  227 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----------  227 (397)
                      .++||++|+++++|++|+.|..++|+..+++|++++|+||++||.|+|+++++++......+...||..           
T Consensus       186 ~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~  265 (408)
T d1t3ia_         186 AQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT  265 (408)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEE
T ss_pred             hhhhhccCceeeeccceecccccccccccCCceEEeccccccCCCCccccccchhhhhcCCceecCCccccccccccccc
Confidence            999999999999999999999999999999999999999998999999999998766555555544332           


Q ss_pred             ---cccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC--CCCCceEEEEecCC
Q psy8850         228 ---EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--NRIPHNLNISFNFI  301 (397)
Q Consensus       228 ---~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  301 (397)
                         ..+++.|++++..++++.++++++.+ +++++.++..++.+++.+.+.+ .++..+.++..  .....++.+.+++.
T Consensus       266 ~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~iv~f~~~~~  344 (408)
T d1t3ia_         266 GELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAALASFNVAGL  344 (408)
T ss_dssp             CCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCSEEEEEETTB
T ss_pred             CCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhcc-CccccccCCCccccCcceEEEEEeCCC
Confidence               34678999999999999999999876 6899999999999999999999 88988886542  23356788888988


Q ss_pred             ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      +..++...|.  ||.++.|.+|..      ...+.++.     .+.||||++.++|.+|||+++++|+++++.
T Consensus       345 ~~~~v~~~L~~~gI~v~~G~~c~~------~~~~~~~~-----~g~vRiS~~~ynt~~did~li~~L~~~~~~  406 (408)
T d1t3ia_         345 HASDVATMVDQDGIAIRSGHHCTQ------PLHRLFDA-----SGSARASLYFYNTKEEIDLFLQSLQATIRF  406 (408)
T ss_dssp             CHHHHHHHHHTTTEECBCSCTTCH------HHHHHTTC-----CCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhCCcEEecCccccc------HHHHhhcC-----CccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            8888888876  899999988864      33333332     378999999999999999999999998864

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.3e-45  Score=338.98  Aligned_cols=366  Identities=40%  Similarity=0.641  Sum_probs=312.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++++++|+.|++++.+++...++||++ .+..+....+.++++|+.+++++|+++++|++++|+|+++..++.++..
T Consensus         5 ld~a~~~~~p~~v~ea~~~~~~~~~~np~~-~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~   83 (376)
T d1eg5a_           5 FDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAE   83 (376)
T ss_dssp             CBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred             EECcccccCCHHHHHHHHHHHHHcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccc
Confidence            799999999999999999999998999998 7888888888999999999999999999999999999999999987665


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE  160 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~  160 (397)
                      ....+|++|++....|++....++.+...|.+++.+|+++++.+|+++++++++++|++|++++++|+||.+.|++++.+
T Consensus        84 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~  163 (376)
T d1eg5a_          84 TFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTR  163 (376)
T ss_dssp             HTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHH
T ss_pred             cccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhh
Confidence            55578899999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhc--CcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCch
Q psy8850         161 LCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT  238 (397)
Q Consensus       161 l~~~~--gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (397)
                      +++.+  |+.+++|++|+.|..++++..+++|++++|+||++||.|.|+++++++.  .+++...++.....+..+..+.
T Consensus       164 ~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~  241 (376)
T d1eg5a_         164 IVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNV  241 (376)
T ss_dssp             HHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCH
T ss_pred             hhhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCceeEEeccCc--ccCCcccCCCCcccccCCcccc
Confidence            98665  9999999999999999999999999999999999899999999998753  4667777777777778888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEec
Q psy8850         239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVS  316 (397)
Q Consensus       239 ~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~  316 (397)
                      .......++....................++.+.|.. ... .+...........+.+.+++.+...+...|.  ||.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr  319 (376)
T d1eg5a_         242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGA-HIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVS  319 (376)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTC-EECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECB
T ss_pred             hhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccc-ccc-cccccccccccceeeeccCCCCHHHHHHHHhhCCeEEe
Confidence            8888877777766656667777788888889999987 443 3444444555677888888888888888776  99999


Q ss_pred             ccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      .|.+|.++...++..+..+|+......+.||+|++.++|.+|||+++++|++++.
T Consensus       320 ~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         320 TSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             C------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            9999988888888889999998877778999999999999999999999999986

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=1.4e-41  Score=316.31  Aligned_cols=341  Identities=18%  Similarity=0.264  Sum_probs=283.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++.+++|+.|++++.+++.....++.. .+..+....+.+.++|+.+++++|+++++|++|+|+|+|+++++.++..
T Consensus        11 ld~~~~~~~p~~v~ea~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~   89 (381)
T d1elua_          11 FNFGGQGILPTVALEAITAMYGYLQENGPF-SIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDW   89 (381)
T ss_dssp             CCTTTCCCCCHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCC
T ss_pred             eeCCcccCCCHHHHHHHHHHHHHhhcCCCc-cchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhh
Confidence            799999999999999999998876555554 4555556667788999999999999989999999999999999998743


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhC-CcEEEEeccCCCCCC--CHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNGLI--TLSQLEEKICSDTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g~~v~~v~~~~~~~~--d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                         ++|++|++++.+|+++...+..+.+. |+++..+|.+.....  +.+.++++++++|+++++++++|+||.+.|+++
T Consensus        90 ---~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~  166 (381)
T d1elua_          90 ---HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAE  166 (381)
T ss_dssp             ---CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHH
T ss_pred             ---cCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccccchhhH
Confidence               78999999999999999988776543 999999998754322  366788888999999999999999999999999


Q ss_pred             HHHHHHhc----CcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc-----
Q psy8850         158 IGELCRSK----GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-----  227 (397)
Q Consensus       158 i~~l~~~~----gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----  227 (397)
                      |.++||++    |+++++|++|+.|..++++..+++|++++|+|| +++|.|+|+++++++....+.+...++..     
T Consensus       167 I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~  246 (381)
T d1elua_         167 IMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGA  246 (381)
T ss_dssp             HHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECT
T ss_pred             HHHHHhhcccccccccccccccccccccccccccccccccccccccccccchhhHHHhhHHHHHhcCccccccccccccc
Confidence            99999985    699999999999999999999999999999999 67788999999999888777766555421     


Q ss_pred             ----------cccccCCCCchhHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEE
Q psy8850         228 ----------EYGLRSGTLATHQIVGMGEAFRLARI-E-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN  295 (397)
Q Consensus       228 ----------~~~~~~~~~~~~~~~~l~~al~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  295 (397)
                                ..++..++++...++++.++++.+.. + .+.+.++..++++++.+.|++ ++++.+++++... ..++.
T Consensus       247 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~-~~~vs  324 (381)
T d1elua_         247 KGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLATSAPQ-AGLVS  324 (381)
T ss_dssp             TSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCSSCCS-SSEEE
T ss_pred             ccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhc-CCCeEecCCCCcc-ccEEE
Confidence                      23456789999999999999998865 3 456678899999999999999 9999998765544 45777


Q ss_pred             EEecCC-ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         296 ISFNFI-EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       296 ~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      |.+++. ...++.+.|+  ||.++..                      ..++++|+|++.++|.+|||+++++|+++
T Consensus       325 f~~~~~~~~~~i~~~L~~~gi~v~~~----------------------~~~~~lRis~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         325 FTVDSPLGHRAIVQKLEEQRIYLRTI----------------------ADPDCIRACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             EEECSSSCHHHHHHHHHHTTEECEEE----------------------TTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             EEcCCCCCHHHHHHHHHhCCcEEEec----------------------CCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            777654 4566777776  7766421                      11378999999999999999999999763

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=279.38  Aligned_cols=340  Identities=13%  Similarity=0.181  Sum_probs=270.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      -.+++++.|++|+++|....          .+..+..+.+.+.++++.|++++|++.+ .|+|+.|||+|+++++.++. 
T Consensus        23 ~~pGP~~~~~~Vl~am~~~~----------i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~-   91 (388)
T d1h0ca_          23 LGPGPSNLPPRIMAAGGLQM----------IGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL-   91 (388)
T ss_dssp             CSSSCCCCCHHHHHHHTCCC----------CCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-
T ss_pred             ccCCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh-
Confidence            35677788899988874211          2224567889999999999999999755 59999999999999999988 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                         .+++++++...++.+...... ....+..+..++.+..+.+|.+++++.+. .+++++++++.+|.||.+.|+++|.
T Consensus        92 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~  167 (388)
T d1h0ca_          92 ---EPGDSFLVGANGIWGQRAVDI-GERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFG  167 (388)
T ss_dssp             ---CSSCCEEECBSSHHHHHHHHH-HHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred             ---ccCCceeeecccceeeeeccc-cccccccccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHH
Confidence               789999999988888755433 33447777777777777789888887665 4899999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccccc--------------
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHG--------------  224 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~--------------  224 (397)
                      ++|+++|+++++|++++.|..++++..+++|++++|.|| ++||.|+|++++++...+.+.....+              
T Consensus       168 ~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (388)
T d1h0ca_         168 ELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANF  247 (388)
T ss_dssp             HHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHH
T ss_pred             HHhhcccccceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhh
Confidence            999999999999999999999999999999999999999 77888899999986544333221111              


Q ss_pred             --CCccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850         225 --GGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F  300 (397)
Q Consensus       225 --~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~  300 (397)
                        .....++..++++...+.++.++++++.+ +++.+.++..++.+++++.+++ +....+..++..+.+.++.|.++ +
T Consensus       248 ~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~-~g~~~~~~~~~~rs~~i~~~~~p~~  326 (388)
T d1h0ca_         248 WGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQA-LGLQLFVKDPALRLPTVTTVAVPAG  326 (388)
T ss_dssp             TTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HTCCBSSCSGGGBCTTEEEEECCTT
T ss_pred             hhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhh-cCcccccCCHHHcCCeEEEEECCCC
Confidence              11233456788999999999999988866 5889999999999999999988 43333333444455678888885 5


Q ss_pred             CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe-eCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~-~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      .+..++...|.   +|.+..|..+..                   ++.|||| ++.+++.+|||+++++|++++++++|+
T Consensus       327 ~~~~~~~~~L~~~~gI~v~~G~~~~~-------------------~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~  387 (388)
T d1h0ca_         327 YDWRDIVSYVIDHFDIEIMGGLGPST-------------------GKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK  387 (388)
T ss_dssp             CCHHHHHHHHHHHHCEECEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHhcCCEEEeCCchhhc-------------------CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            67888888775   888888754432                   4789999 677789999999999999999998764

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=100.00  E-value=6.3e-35  Score=273.31  Aligned_cols=342  Identities=14%  Similarity=0.108  Sum_probs=255.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ||+++.+++|..|++++.+++...++++.. .+.......+..+++|+.+++++|+++++|++++|+|++++.++.....
T Consensus        31 Ld~as~g~~p~~v~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~  109 (404)
T d1qz9a_          31 LDGNSLGARPVAALARAQAVIAEEWGNGLI-RSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALR  109 (404)
T ss_dssp             CCTTTSCCCBTTHHHHHHHHHHTCCCCCGG-GHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHH
T ss_pred             cCCcccccCCHHHHHHHHHHHHHHhcccCc-ccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhh
Confidence            799999999999999999999876766654 3333334446788999999999999999999999999999887765432


Q ss_pred             h--hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHH
Q psy8850          81 F--YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        81 ~--~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                      .  ...+++.|++++..|++....+...   +.++..++.+.++..++++++++++++|++|++++++|.||.+.|+++|
T Consensus       110 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i  186 (404)
T d1qz9a_         110 VQATRSPERRVIVTETSNFPTDLYIAEG---LADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQAL  186 (404)
T ss_dssp             HHHHHSTTCCEEEEETTSCHHHHHHHHH---HHHHHCSSCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred             hhcccCCCcEEEEeccccchHHHHHHhh---hheeeeeceeccccccchhHHHhcCCCceEEEEecccccccceecHHHH
Confidence            1  1256788888888877776555544   3333444444445678899999999999999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCC-ceEEEEecCCCCccccccccCC----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKG-IGALYIRRNPRTRIEAQIHGGG----------  226 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g-~g~~~~~~~~~~~~~~~~~~~~----------  226 (397)
                      +++|+++|+++++|++|+.|..++++..+++|++++|.|| +++++| +|+++.++.....+.+...+++          
T Consensus       187 ~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (404)
T d1qz9a_         187 TALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEP  266 (404)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCS
T ss_pred             hccccccccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccc
Confidence            9999999999999999999999999999999999999999 555554 7888888877665543322211          


Q ss_pred             ------ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHhhhcCcEEEeCCCCC-CCCceEE
Q psy8850         227 ------HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELK---RILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLN  295 (397)
Q Consensus       227 ------~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~  295 (397)
                            ....++.++++......+..+++.+.+ +...+.+   ........+.+.+.. .+++.++++... ....++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~-~~~~~i~~p~~~~~r~~~vs  345 (404)
T d1qz9a_         267 RYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCA-AHELTLVTPREHAKRGSHVS  345 (404)
T ss_dssp             SCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TSCCEECSCSSGGGBCSEEE
T ss_pred             cccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhcc-CCCEEEECCCCccceeeEEE
Confidence                  123456778888888888787777644 3344444   444444445555555 688888875432 2234555


Q ss_pred             EEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCCHHHHHHHHHHHHHHHHH
Q psy8850         296 ISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       296 ~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      |..+  ++.++.+.|.  ||.+..   +                    .++.||||++ .|+|.+|||+++++|++++++
T Consensus       346 f~~~--~~~~v~~~L~~~gi~~~~---r--------------------~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         346 FEHP--EGYAVIQALIDRGVIGDY---R--------------------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             EECT--THHHHHHHHHTTTEECEE---E--------------------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EecC--CHHHHHHHHHHCCCEEee---c--------------------CCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence            5544  5778888886  664321   1                    1378999996 589999999999999999875

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1e-33  Score=261.10  Aligned_cols=330  Identities=14%  Similarity=0.113  Sum_probs=244.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCChhHHHHHHHHHhHh
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ..++.+.|+.|++++.+..          .+..+..+.+..+++++.+++++|+++++  +++++|+|+++++++.++. 
T Consensus         5 ~pGP~~~~~~V~~A~~~~~----------~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~-   73 (361)
T d1m32a_           5 TPGPLTTSRTVKEAMLFDS----------CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL-   73 (361)
T ss_dssp             SSSSCCCCHHHHHTTCCCC----------CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC-
T ss_pred             cCCCCCCCHHHHHHhhhhc----------cCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhh-
Confidence            3566677888887753211          23334455678899999999999998765  7889999999999999987 


Q ss_pred             hhccCCCEE-EEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850          81 FYKKRGKHI-ITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        81 ~~~~~g~~v-l~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                         .+++.+ +++...+...........  +.....+....  ....+.+.......++++++++++.+|.||.+.|+++
T Consensus        74 ---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~  148 (361)
T d1m32a_          74 ---GPQDKVLIVSNGAYGARMVEMAGLM--GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDE  148 (361)
T ss_dssp             ---CTTCCEEEEESSHHHHHHHHHHHHH--TCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHH
T ss_pred             ---hhccccceeeehhhhhhHHHHhhhh--hcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhh
Confidence               444444 554444444433333322  44444444433  3333444455566789999999999999999999999


Q ss_pred             HHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc---------
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH---------  227 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~---------  227 (397)
                      |.++||+||+++++|++|+.|..++|+..+++|++++|.|| ++||.|+|+++++++......+...++..         
T Consensus       149 i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (361)
T d1m32a_         149 VGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCM  228 (361)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHH
T ss_pred             hhhhhcccceeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccc
Confidence            99999999999999999999999999999999999999999 77899999999998877776665554322         


Q ss_pred             --cccccCCCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---
Q psy8850         228 --EYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---  300 (397)
Q Consensus       228 --~~~~~~~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---  300 (397)
                        ......++++...+.++..++....+  +.....++.....+.+.+.++.  .+..+..++..+.+.++.+..++   
T Consensus       229 ~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~rs~~v~~~~~p~~~~  306 (361)
T d1m32a_         229 EDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA--LGFNTLLDDELHSPIITAFYSPEDPQ  306 (361)
T ss_dssp             HHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCGGGBCSSEEEEECCCCTT
T ss_pred             cccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhh--cCCcccCChhhcCCcEEEEECCCCCC
Confidence              12334567888888888778776644  3566677888888899999888  45555555444556666777653   


Q ss_pred             CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      .+..++...|.  ++.+..|....+                    +.+||++..+++++||++++++|++++
T Consensus       307 ~~~~~~~~~l~~~gi~i~~G~~~~~--------------------~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         307 YRFSEFYRRLKEQGFVIYPGKVSQS--------------------DCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             CCHHHHHHHHHHTTEECEECCCSSS--------------------CEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHCCcEEECCCcCCC--------------------CEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            45677777776  888877754443                    889999766789999999999999874

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-33  Score=260.41  Aligned_cols=341  Identities=13%  Similarity=0.128  Sum_probs=259.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC----CCCcEEEeCChhHHHHHHHHHh
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA----DPREIIWTSGATESNNLAIKGA   78 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~i~~~~g~t~a~~~~l~~l   78 (397)
                      ..++++.|++|+++|..        +.. .| .+..+.+...++++.++++++.    +++.|+||+|||+++++++.++
T Consensus         8 ~PGP~~v~~~V~~Am~~--------~~~-~h-r~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l   77 (382)
T d2bkwa1           8 IPGPIILSGAVQKALDV--------PSL-GH-TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNF   77 (382)
T ss_dssp             SSSSCCCCHHHHHTTSC--------CCC-CT-TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHhCc--------ccC-CC-CcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHH
Confidence            45677788888887632        111 22 2456677888899999999985    4456999999999999999998


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHH
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~  156 (397)
                      ...+ ++||+|++....+++...... +...|..+..+... .....+.+.+++++. .+++++++++.+|.||...|++
T Consensus        78 ~~~~-~~gd~vlv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~  155 (382)
T d2bkwa1          78 ILSK-APNKNVLVVSTGTFSDRFADC-LRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLK  155 (382)
T ss_dssp             SCTT-CSCCEEEEECSSHHHHHHHHH-HHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred             HHhc-CCCCceEEEEechhhhhhhhh-ccccccccccccccCCCCccchhHHHHHhhhccchheeeeeccccccccccch
Confidence            6433 578999999888887764433 34457777766544 444577888887765 5789999999999999999999


Q ss_pred             HHHHHHHhc--CcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC-------
Q psy8850         157 EIGELCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG-------  226 (397)
Q Consensus       157 ~i~~l~~~~--gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~-------  226 (397)
                      .+.++|+++  ++++++|+++++|..++|+..+++|++++|.|| ++||+|+|+++++++..+.+.+...++.       
T Consensus       156 ~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~  235 (382)
T d2bkwa1         156 AISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSS  235 (382)
T ss_dssp             HHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTC
T ss_pred             hhhhhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhh
Confidence            999988876  599999999999999999999999999999999 6799999999999887665544332221       


Q ss_pred             ------------ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCC--CCCCCC
Q psy8850         227 ------------HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGD--MNNRIP  291 (397)
Q Consensus       227 ------------~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~  291 (397)
                                  ...+...+|++...++++..+++++.+ ++..+.++.+++++++++.+.+ ..+......  +....+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~s~  314 (382)
T d2bkwa1         236 LRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVN-GLQLTSVSRYPSNMSAH  314 (382)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-TTCCEESSCSSSTTBCS
T ss_pred             hhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh-cccccccccCchhccCC
Confidence                        123455789999999999999998865 6888889999999999999987 555555432  222334


Q ss_pred             ceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe-eCCCCCHHHHHHHHHHHHH
Q psy8850         292 HNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~-~~~~~~~~~i~~~~~~l~~  368 (397)
                      .++.+..+  ++.++...|+  ||.+..|....                  .+++.+||+ ++...+.+++++++++|..
T Consensus       315 ~v~~~~~~--~~~~~~~~L~~~gi~i~~G~~~~------------------~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~  374 (382)
T d2bkwa1         315 GLTAVYVA--DPPDVIAFLKSHGVVIAGGIHKD------------------IGPKYIRIGHMGVTACNKNLPYMKNCFDL  374 (382)
T ss_dssp             SCEEEECS--CHHHHHHHHHHTTEECBCCCCTT------------------TGGGEEEECCCGGGTSSTTCTHHHHHHHH
T ss_pred             cEEEEcCC--CHHHHHHHHHHCCeEEECCCChh------------------hcCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence            45455544  5778887776  88888774322                  235889999 6665678889999999988


Q ss_pred             HHHHHHhc
Q psy8850         369 KVKKLREL  376 (397)
Q Consensus       369 ~~~~~~~~  376 (397)
                      +...++++
T Consensus       375 i~~~L~~~  382 (382)
T d2bkwa1         375 IKLALQRK  382 (382)
T ss_dssp             HHHHTTC-
T ss_pred             HHHHHCcC
Confidence            77777653

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=100.00  E-value=6.8e-33  Score=257.46  Aligned_cols=323  Identities=13%  Similarity=0.060  Sum_probs=233.8

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .++|+.+++++++.+..-.    . .|.......+..+.+.+.+.+..|  +++++|++|+|+++|+..++.+++    +
T Consensus        42 ~~~p~~v~~a~~~~~~~~~----~-~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~----~  112 (388)
T d1j32a_          42 FNTPKHIVEAAKAALEQGK----T-RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI----E  112 (388)
T ss_dssp             SCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----C
T ss_pred             CCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHh----C
Confidence            3568999999999886411    1 222222222333344444444445  467789999999999999999988    8


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG  159 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~  159 (397)
                      +||+|+++.|+|+.+...+...   |.+++.++.+.  ++.+|++++++++.++++++++++|+||||.+++   +++|+
T Consensus       113 ~gd~Vlv~~P~y~~~~~~~~~~---~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~  189 (388)
T d1j32a_         113 PGDEVIIPAPFWVSYPEMVKLA---EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIA  189 (388)
T ss_dssp             TTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CCCEEEEcCCCcHHHHHHHHHh---cCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhh
Confidence            9999999999999998887776   88888888763  4579999999999999999999999999999998   56788


Q ss_pred             HHHHhcCcEEEEecccccCcc----ccccCcc-----cccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcc
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKI----DINIQNY-----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE  228 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~----~~~~~~~-----~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~  228 (397)
                      ++|+++|++||+|++|+....    ...+...     +..+++.|++|.++.+|  +|+++.+++....+.....     
T Consensus       190 ~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~-----  264 (388)
T d1j32a_         190 QVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQG-----  264 (388)
T ss_dssp             HHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHH-----
T ss_pred             cccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhh-----
Confidence            889999999999999963222    1111111     34688999999666445  7998887655444332211     


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESL  306 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  306 (397)
                        .....++.....+....++...+++.+..+.++++++.+.+.|++ ++++.+..+.+   +.++++.++  ..++.++
T Consensus       265 --~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~p~g---g~~l~~~l~~~~~~~~~~  338 (388)
T d1j32a_         265 --HSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLECPKPDG---AFYMFPSIAKTGRSSLDF  338 (388)
T ss_dssp             --TTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBCCCCCB---TTEECCBCGGGTCCHHHH
T ss_pred             --hccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-CCCCEecCCCc---eEEEEEECCCCCCCHHHH
Confidence              111233334444444455444456888899999999999999998 77877665433   445555655  3456677


Q ss_pred             HHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       307 ~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .+.|.   ||.+.+|..|..                   .+++|++++  .+.+++++++++|+++++.+
T Consensus       339 ~~~ll~~~gV~v~pG~~F~~-------------------~~~~Rls~~--~~~e~l~~al~rl~~~l~~l  387 (388)
T d1j32a_         339 CSELLDQHQVATVPGAAFGA-------------------DDCIRLSYA--TDLDTIKRGMERLEKFLHGI  387 (388)
T ss_dssp             HHHHHHHHCEECEEGGGGTC-------------------TTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEEeccccCC-------------------CCeEEEEEe--CCHHHHHHHHHHHHHHHHHh
Confidence            76663   999999976643                   378999997  48899999999999998764

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.8e-32  Score=255.03  Aligned_cols=320  Identities=12%  Similarity=0.085  Sum_probs=232.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~---~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      ++|+.+++++.+++..-.    . .|..    ..+..++|+++++++    +   .++++|++|+|+++++.+++.+++ 
T Consensus        38 ~~p~~v~~~~~~a~~~~~----~-~Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~-  107 (388)
T d1gdea_          38 DTPQHIKEYAKEALDKGL----T-HYGP----NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-  107 (388)
T ss_dssp             CCCHHHHHHHHHHHHTTC----C-SCCC----TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-
T ss_pred             CCCHHHHHHHHHHHhcCc----c-CCCC----CcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhc-
Confidence            568999999999886511    1 2222    223456666666664    2   355679999999999999999988 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---H
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l  155 (397)
                         ++||+|++..|+|+.+...+...   |.+++.+|.++  ++.+|+++|++.++++++++++++|+||||.+++   +
T Consensus       108 ---~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~  181 (388)
T d1gdea_         108 ---KDGEEVLIPTPAFVSYAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDL  181 (388)
T ss_dssp             ---CTTCEEEEEESCCTTHHHHHHHH---TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred             ---CCCCEEEECCCCcHHHHHHHHHc---CCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCHHHH
Confidence               89999999999999999988888   99999999863  4579999999999999999999999999999998   5


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc----c---cccC-cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccC
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI----D---INIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~----~---~~~~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~  225 (397)
                      ++|+++|++||++||+|++|+....    .   ..+. ..+..+++.|++|.+|.+|  +|+++++++....+...... 
T Consensus       182 ~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~~~-  260 (388)
T d1gdea_         182 EEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMY-  260 (388)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeeccchhhhhhcccc-
Confidence            6788899999999999999973211    1   1111 1245688999999666444  79988886554444332211 


Q ss_pred             CccccccCCCCchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--C
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFR--LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--I  301 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  301 (397)
                           . ....+.....+...+++  ...+.+....+.+.+.+..+.+.|.+  .++.+..+.+   +.++++.+++  .
T Consensus       261 -----~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~p~g---g~fl~~~l~~~~~  329 (388)
T d1gdea_         261 -----N-ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE--MGLPTVKPKG---AFYIFPRIRDTGL  329 (388)
T ss_dssp             -----T-TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCB---TTEECCBCGGGTC
T ss_pred             -----c-cccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhh--ccccccCCCc---eEEEEEECCCCCC
Confidence                 1 12233333333334443  22334667778888888999999987  3444443322   4456666653  5


Q ss_pred             ChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         302 EGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       302 ~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      +..++.+.+.   ||.+.||..|..                 ...+++||+++  .+.+++++++++|+++++++|
T Consensus       330 ~~~~~~~~ll~e~gV~v~PG~~F~~-----------------~~~~~iRis~~--~~~e~l~~al~rL~~~l~e~k  386 (388)
T d1gdea_         330 TSKKFSELMLKEARVAVVPGSAFGK-----------------AGEGYVRISYA--TAYEKLEEAMDRMERVLKERK  386 (388)
T ss_dssp             CHHHHHHHHHHHTCEECEEGGGGCG-----------------GGTTBEEEECC--SCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhCCEEEEechhhCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHHhcC
Confidence            6777777653   899999977654                 12488999997  478999999999999998765

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4.4e-32  Score=250.22  Aligned_cols=339  Identities=13%  Similarity=0.147  Sum_probs=226.4

Q ss_pred             CCCCCHHHHHHHHHHHhhccC-CCCCCCcchh-hhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFG-NPASRNHIYG-WTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      .+.+++++++++.++...+.. +-.. ..... ...++..+.+++.+++++|.+  ++++|+|+|+|+.+++.+++    
T Consensus        11 ~~~l~~~a~~a~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~~~A~~~g~e--~~~~t~g~t~a~~~~~~al~----   83 (364)
T d2e7ja1          11 GGKLTEEARQALLEWGDGYSVCDFCT-TGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLA----   83 (364)
T ss_dssp             TCCCCHHHHHHHHHC---------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHHC----
T ss_pred             CCcCCHHHHHHHHHHhcCCchhcccc-ccccccccChHHHHHHHHHHHHHhCcC--EEEEECcHHHHHHHHHHHHh----
Confidence            346788999998875443110 0000 00001 111236777999999999975  79999999999999999998    


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcC-----CceEEEEecccCcccccccHH
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~-----~~~~v~~~~~~~~tG~~~~l~  156 (397)
                      ++||+|+++.++|++...++...   |.++..+|.++  ++.+|++++++++++     ++++|++++++|+||.+.|++
T Consensus        84 ~~gd~Vi~~~~~h~s~~~~~~~~---g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~  160 (364)
T d2e7ja1          84 KKDAWVVMDENCHYSSYVAAERA---GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK  160 (364)
T ss_dssp             CTTCEEEEETTCCHHHHHHHHHT---TCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH
T ss_pred             CCCcEEEeecccccccchHHHhc---cceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecch
Confidence            89999999999999998887766   99999999863  568999999999964     346899999999999999999


Q ss_pred             HHHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccC-CccccccCC
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG-GHEYGLRSG  234 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  234 (397)
                      +|+++|++||+++|+|++|+.+..+++...+++|++++|+|| ++++.|+|+++++++....+....... .....+..+
T Consensus       161 ~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (364)
T d2e7ja1         161 KIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGC  240 (364)
T ss_dssp             HHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTC
T ss_pred             hheeccccccchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCccccccccc
Confidence            999999999999999999999999888888899999999999 455556899999987666553322211 111222233


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCCc-
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDI-  313 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i-  313 (397)
                      +.+......+.++++...+.+..+.+. .++++++.+.|.+ + ++......... .....+..+.  ..++...+... 
T Consensus       241 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~-~-g~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~  314 (364)
T d2e7ja1         241 TARGATIITLMASFPHVRERIKRWDEE-VEKARRFAAEMEK-L-GIKQLGDNPHN-HDLMFFHAEV--LYEISKKAKGGR  314 (364)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHGGGHHHH-HHHHHHHHHHHHH-T-TCEEESSSSCC-SSEEEEECHH--HHHHHHHSSSGG
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-c-CCeecCCCCCC-cceEEEeccc--hHHHHHHhhccc
Confidence            444455566667777666554444433 3566778888888 4 55555443222 2232333221  12222222210 


Q ss_pred             EecccCccCCCCCChhhHHHhhCC--CccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         314 AVSSGSACTSASLEPSYVLRALGC--NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~g~--~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ....            ..+...+.  ........+|++.. .++++|||+++++|+++++++
T Consensus       315 ~~~~------------~~l~~~~~~~~~~g~~~~~~~~~~-~~t~edid~~~~~l~ei~~~y  363 (364)
T d2e7ja1         315 FFLY------------RELKSRKIHGIKPGLTRYFKLSTY-GLSDEEVDYVLNAFKEIIEKY  363 (364)
T ss_dssp             GHHH------------HHHHHTTEECSCTTCCSEEEEECT-TCCHHHHHHHHHHHHHHHHHC
T ss_pred             hHHH------------HHHHhcCCceecCCCcceEEEecc-CCCHHHHHHHHHHHHHHHHHh
Confidence            0000            01111110  00111245677643 368999999999999998875

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.2e-31  Score=242.42  Aligned_cols=331  Identities=12%  Similarity=0.082  Sum_probs=257.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      -.+++++.|++|+++|.+..          .+..+..+.+.++++++.++++++.+.+.+++++|||.|+++++.++.  
T Consensus         4 ~~PGP~~v~~~V~~am~~~~----------~~hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~--   71 (348)
T d1iuga_           4 LTPGPVRLHPKALEALARPQ----------LHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--   71 (348)
T ss_dssp             CSSSSCCCCHHHHHHHHSCC----------CCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--
T ss_pred             cCCCCCCCCHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc--
Confidence            35677888999998875432          222345778899999999999999987779999999999999999988  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL  161 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l  161 (397)
                        ++|++|++...++.+... ...+.+.|..+..++.+....+++++   ....+++.++++|..|.+|.+.|+++|.++
T Consensus        72 --~~g~~vlv~~~G~f~~~~-~~~a~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~v~~~h~eTstG~~~~i~~i~~~  145 (348)
T d1iuga_          72 --APGERVLVPVYGKFSERF-YEIALEAGLVVERLDYPYGDTPRPED---VAKEGYAGLLLVHSETSTGALADLPALARA  145 (348)
T ss_dssp             --CTTCEEEEEECSHHHHHH-HHHHHHTTCEEEEEECCTTCCCCTTT---SCCSSCSEEEEESEETTTTEECCHHHHHHH
T ss_pred             --cccccceeecchHHHHHH-HHHHHhcCcccccccccCCCcccccc---ccccCCCeeEEEecchhhhhhccHHHHHHH
Confidence              788988888777666543 34555668888888876544445443   345688999999999999999999999999


Q ss_pred             HHhcC--cEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccc--cC-----Cccccc
Q psy8850         162 CRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIH--GG-----GHEYGL  231 (397)
Q Consensus       162 ~~~~g--i~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~--~~-----~~~~~~  231 (397)
                      |++++  +++++|+++++|..++++..+++|++++|.|| ++||+|+|+++++++.++++++...  +.     ....+.
T Consensus       146 ~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~  225 (348)
T d1iuga_         146 FKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGE  225 (348)
T ss_dssp             HHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTC
T ss_pred             HHhhhccceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhhhhhccCc
Confidence            99984  79999999999999999999999999999999 7799999999999887666544211  10     112345


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCChHHHHHHh
Q psy8850         232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI  310 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l  310 (397)
                      .++|+++..++++.++++++.+...+..++.......+++.++.  .++.....  ...+.++.+.+| +.+..++...|
T Consensus       226 ~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gl~~~~~--~~s~~v~~~~~P~g~~~~~~~~~l  301 (348)
T d1iuga_         226 SAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE--GGLRPVPK--RFSPAVAAFYLPEGVPYARVKEAF  301 (348)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH--TTCEESCS--SBCTTCEEEECCTTCCHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh--hhhccChh--hcCCeEEEEECCCCCCHHHHHHHH
Confidence            57799999999999999988665555555555555666666655  57766543  234667788886 56888888887


Q ss_pred             C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         311 K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       311 ~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .  |+.+.+|..                   ...+..+||+...+.+.+|+++++++|+++++++
T Consensus       302 ~~~gi~i~~G~~-------------------~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         302 AQRGAVIAGGQG-------------------PLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             HTTTEECEECCG-------------------GGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCeEEEcCcc-------------------ccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            6  888877742                   2334789999887899999999999999999875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.5e-32  Score=250.48  Aligned_cols=316  Identities=18%  Similarity=0.144  Sum_probs=236.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK   87 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~   87 (397)
                      ++|+.+++++.+.+.+...++          ......++|+++++++++++++|++|+|+++|+..++.++.    ++++
T Consensus        38 ~~p~~i~~al~~~l~~~~~Y~----------~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~----~~~d  103 (368)
T d1v2da_          38 PPPPFLLEAVRRALGRQDQYA----------PPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV----GPGD  103 (368)
T ss_dssp             CCCHHHHHHHHHHTTTSCSCC----------CTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC----CTTC
T ss_pred             CCCHHHHHHHHHHhhcccCCC----------CCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc----cccc
Confidence            578999999999886532222          12245788999999999999999999999999999999988    7999


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccC---CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL  161 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~---~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l  161 (397)
                      .|+++.|+|+.+.......   |.+++.++.+   +++.+|+++++++++++++++++++|+||||.+++   +++|+++
T Consensus       104 ~v~~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~  180 (368)
T d1v2da_         104 EVVVLEPFFDVYLPDAFLA---GAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARL  180 (368)
T ss_dssp             EEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             cccccCCcchhhhhHHHhc---CCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHH
Confidence            9999999999999888887   8888887764   34578999999999999999999999999999998   6778999


Q ss_pred             HHhcCcEEEEecccccCcccccc-----CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCC
Q psy8850         162 CRSKGVIFHCDAAQAVGKIDINI-----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~~~~~-----~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
                      |++||+++|+|++|.........     ......+++.|++|.++..|  +|+++.+++....+......       ...
T Consensus       181 a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~-------~~~  253 (368)
T d1v2da_         181 ARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQW-------TSF  253 (368)
T ss_dssp             HHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHH-------HTS
T ss_pred             HHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhhhhhc-------ccc
Confidence            99999999999998743322111     11135567788888444333  78888887665554433211       111


Q ss_pred             CCchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhCC
Q psy8850         235 TLATHQIVGMGEAFRLAR--IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKD  312 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  312 (397)
                      ..+.........++....  +++++..+.++++++++.+.|++  .++.+..+.+   +.++++.+++.+..++.+. .|
T Consensus       254 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~~~~~p~g---~~~~~~~l~~~~~~~ll~~-~g  327 (368)
T d1v2da_         254 SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVYVPEG---TYFLMAELPGWDAFRLVEE-AR  327 (368)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEECCSB---SSEEEEECTTCCHHHHHHH-TC
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHh--cCcEEecCCc---eeEEEEeCCccHHHHHHHh-CC
Confidence            233333333334554332  25788888899999999999998  4777776544   4567778887666655332 49


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      |.+.+|..|...               ...+++|||+++  .+++++++++++|++++
T Consensus       328 I~v~pg~~F~~~---------------~~~~~~iRis~~--~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         328 VALIPASAFYLE---------------DPPKDLFRFAFC--KTEEELHLALERLGRVV  368 (368)
T ss_dssp             EECEEGGGGCSS---------------SCCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred             EEEEechhhCCC---------------CCCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence            999999877541               123489999987  47899999999998763

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=100.00  E-value=1.2e-31  Score=249.45  Aligned_cols=337  Identities=16%  Similarity=0.198  Sum_probs=256.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc-EEEeCChhHHHHHHHHHhHh
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE-IIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-i~~~~g~t~a~~~~l~~l~~   80 (397)
                      -+.+++..+++|+++|.+..          .+..+..+.+.+.++++.|+++++++..+ |++++|||.++++++.++. 
T Consensus        21 ~~PGP~~~~~~V~~Am~~~~----------~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~-   89 (388)
T d2ch1a1          21 MGPGPSNCSKRVLTAMTNTV----------LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-   89 (388)
T ss_dssp             CSSSSCCCCHHHHHHTTSCC----------CCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-
T ss_pred             eeCCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhc-
Confidence            35677778899988863221          23346788899999999999999997554 6678899999999999998 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc-CCceEEEEecccCcccccccHHHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIG  159 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~l~~i~  159 (397)
                         .+++++++....+.+.... ....+.+.....++..+....+.+..+..+. .+++++++++.+|.+|.+.|++++.
T Consensus        90 ---~~~~~vl~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~  165 (388)
T d2ch1a1          90 ---EEGDRVLIAVNGIWAERAV-EMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVG  165 (388)
T ss_dssp             ---CTTCEEEEEESSHHHHHHH-HHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred             ---cccccccccccccccccch-hhhhhhcccccccccccccccchhhhhhhhccCCcceeeeeecccccccccchhhhc
Confidence               7889998888877776544 3344557788878777666677777776654 5899999999999999999999999


Q ss_pred             HHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCcccccccc--------------
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHG--------------  224 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~--------------  224 (397)
                      ++||++|+++++|+++++|..++|+..+++|++++|.|| ++||.|+|+++++++..+.......+              
T Consensus       166 ~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (388)
T d2ch1a1         166 QICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNY  245 (388)
T ss_dssp             HHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHH
T ss_pred             chhccccceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhhhhh
Confidence            999999999999999999999999999999999999999 78899999999987644432211111              


Q ss_pred             --CCccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-C
Q psy8850         225 --GGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F  300 (397)
Q Consensus       225 --~~~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~  300 (397)
                        .........++++...+.++..+++.+.. +.....++........+..+.. .........+..+.+.++.|.++ +
T Consensus       246 ~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rs~~v~~~~~p~g  324 (388)
T d2ch1a1         246 WGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK-MGLDIFVKDPRHRLPTVTGIMIPKG  324 (388)
T ss_dssp             TTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HTCCBSSCSGGGBCTTEEEEECCTT
T ss_pred             hcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh-cccccccCCHHHhCCeEEEEECCCC
Confidence              11123345677888888888888887654 4666666666666677777766 33332334444455678888885 5


Q ss_pred             CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEe-eCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         301 IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       301 ~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~-~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .+..++...|.   +|.+..|..+..                   ++.|||+ ++.+++.|||++++++|+++++..
T Consensus       325 ~~~~~l~~~l~~~~gI~v~~G~~~~~-------------------~~~~RIs~~g~~~t~edI~~ll~alke~L~~~  382 (388)
T d2ch1a1         325 VDWWKVSQYAMNNFSLEVQGGLGPTF-------------------GKAWRVGIMGECSTVQKIQFYLYGFKESLKAT  382 (388)
T ss_dssp             CCHHHHHHHHHHHHCBCCBCCCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhcCCEEEeCCCcccc-------------------CCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhh
Confidence            77888887774   888888865432                   4789999 577778999999999999988763

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=100.00  E-value=9.2e-32  Score=249.29  Aligned_cols=335  Identities=15%  Similarity=0.167  Sum_probs=258.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhH
Q psy8850           1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAA   79 (397)
Q Consensus         1 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~   79 (397)
                      |...++++.|++|+++|....          .+..+..+.+.++++++.++++++++.+ .|++++|||.++++++..+.
T Consensus        21 l~~PGP~~v~~~Vl~am~~~~----------~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~   90 (377)
T d1vjoa_          21 LLGPGPSNAHPSVLQAMNVSP----------VGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV   90 (377)
T ss_dssp             ECSSSCCCCCHHHHHHHSSCC----------CCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC
T ss_pred             eecCCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc
Confidence            356788888999988864311          3344678889999999999999999654 58888899999999999988


Q ss_pred             hhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHH-HhcCCceEEEEecccCcccccccHHHH
Q psy8850          80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQPILEI  158 (397)
Q Consensus        80 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~-~i~~~~~~v~~~~~~~~tG~~~~l~~i  158 (397)
                          .+++++++....|.+..... .....+.....+..+.+...+.+..+. ....+++++++++.+|.||.+.|+++|
T Consensus        91 ----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i  165 (377)
T d1vjoa_          91 ----EPGDVVLIGVAGYFGNRLVD-MAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGV  165 (377)
T ss_dssp             ----CTTCEEEEEESSHHHHHHHH-HHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred             ----ccccccceeeechhhhhhhh-hhhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhhh
Confidence                78899999888887664443 334446666666665544455555554 445689999999999999999999999


Q ss_pred             HHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCC-----------
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG-----------  226 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~-----------  226 (397)
                      .++||++|+++++|+++++|..++++..+++|++++|.|| ++||.|+|+++.+++..+...+...++.           
T Consensus       166 ~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (377)
T d1vjoa_         166 GELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGK  245 (377)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHH
T ss_pred             hhhhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccchhhh
Confidence            9999999999999999999999999999999999999999 7889899999998765444332221111           


Q ss_pred             --ccccccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec-CCC
Q psy8850         227 --HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIE  302 (397)
Q Consensus       227 --~~~~~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  302 (397)
                        ....+..++++...+..+.++.....+ +.....++.+++.+++++.+.+  .++.++.++..+.+.++.+.++ +.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~rs~~v~~~~~p~~~~  323 (377)
T d1vjoa_         246 YWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED--IGLSLHVEKEYRLPTLTTVCIPDGVD  323 (377)
T ss_dssp             HHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCGGGBCSSEEEEECCTTCC
T ss_pred             ccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhc--cCceeecChHhcCCeEEEEECCCCCC
Confidence              123345566777777777676666544 5888889999999999999988  5666665656566778888885 467


Q ss_pred             hHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee-CCCCCHHHHHHHHHHHHHHHH
Q psy8850         303 GESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       303 ~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      ..++...|.   +|.+..|..+.                   .++.|||++ +.+++.||||+++++|+++++
T Consensus       324 ~~~l~~~L~~~~gI~v~~G~~~~-------------------~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         324 GKAVARRLLNEHNIEVGGGLGEL-------------------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             HHHHHHHHHHHHCEECEECCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCEEEecCcccc-------------------cCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            888887774   88888775322                   247899994 667789999999999998863

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.4e-32  Score=253.52  Aligned_cols=313  Identities=14%  Similarity=0.077  Sum_probs=223.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++|+.+++++.+++..-.    . .|..    ..+..++|+.+++++    +  +++++|++|+|+++|+..++.+++  
T Consensus        44 ~~p~~i~~a~~~~~~~~~----~-~Y~~----~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~--  112 (382)
T d1b5pa_          44 DTPEHVKEAARRALAQGK----T-KYAP----PAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL--  112 (382)
T ss_dssp             CCCHHHHHHHHHHHHTTC----C-SCCC----TTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHhcCC----c-CCCC----CCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhC--
Confidence            568999999999886511    1 2222    223455566666555    3  567899999999999999999998  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~  156 (397)
                        ++||.|++..|.|+.+...+...   |.+++.+|.++  +..+|+++++++++++++++++++||||||.+++   ++
T Consensus       113 --~~gd~vl~~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~  187 (382)
T d1b5pa_         113 --DPGDEVIVLSPYWVSYPEMVRFA---GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLE  187 (382)
T ss_dssp             --CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             --CCCCEEEECCCCcHHHHHHHHHh---cCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHH
Confidence              89999999999999999888777   99999998763  4578999999999999999999999999999998   56


Q ss_pred             HHHHHHHhcCcEEEEecccccCcc---c--cccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKI---D--INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY  229 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~---~--~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~  229 (397)
                      +|+++|++||++||+|++|+....   +  ......+..+++.|++|.++.+|  +|+++.+++..+.+.....      
T Consensus       188 ~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~------  261 (382)
T d1b5pa_         188 ALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR------  261 (382)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHH------
T ss_pred             HHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECHHHHHHHHHHHH------
Confidence            789999999999999999983221   1  11112245688899999666445  7999887665444332211      


Q ss_pred             cccCCCCchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChH
Q psy8850         230 GLRSGTLATHQIVGMGEAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE  304 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  304 (397)
                       .....++.........++.   .....+...++.++.+++.+.+.+.+  .++.+..+.+   +.++++.+..  .+..
T Consensus       262 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~p~g---g~~~~~~~~~~~~~~~  335 (382)
T d1b5pa_         262 -QSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA--LGLKAVRPSG---AFYVLMDTSPIAPDEV  335 (382)
T ss_dssp             -TTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCCBCCCSB---TTEEEEECTTTCSSHH
T ss_pred             -hcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhh--cCCeEecCCc---eEEEeEeCCCCCCCHH
Confidence             1112233332222222332   22334666778888888899998888  3555544433   4566777753  3455


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      .+.+.+.  ||.+.+|..|..                   .+++||+++.  +++++++++++|+++
T Consensus       336 ~~~~~l~e~gV~v~PG~~F~~-------------------~~~iRis~~~--~~e~l~~al~rl~~~  381 (382)
T d1b5pa_         336 RAAERLLEAGVAVVPGTDFAA-------------------FGHVRLSYAT--SEENLRKALERFARV  381 (382)
T ss_dssp             HHHHHHHHTTEECEESGGGTC-------------------TTEEEEECCS--CHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHCCEEEEeCcccCC-------------------CCeEEEEEcC--CHHHHHHHHHHHHHh
Confidence            6666665  999999976653                   3789999974  789999999888765

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.7e-31  Score=248.86  Aligned_cols=326  Identities=13%  Similarity=0.032  Sum_probs=227.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh------------CCCCCcEEEeCChhHHHHHHH
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------------YADPREIIWTSGATESNNLAI   75 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~------------~~~~~~i~~~~g~t~a~~~~l   75 (397)
                      ++++.+++++.+.+.....   . .|..    ..+..++|+++++++            ++++++|++|+|+++|+..++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~---~-~Y~~----~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~  118 (412)
T d1bw0a_          47 LTSAAQIKKLKEAIDSQEC---N-GYFP----TVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAI  118 (412)
T ss_dssp             CCCHHHHHHHHHHHHTTCS---S-SCCC----TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhhCCCC---C-CCCC----CcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhh
Confidence            4567788888877654110   0 2222    223444555555543            256779999999999999999


Q ss_pred             HHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhcCCceEEEEecccCcccccc
Q psy8850          76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ  153 (397)
Q Consensus        76 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~  153 (397)
                      ++++    ++||+|++++|+|+.+...+...   |.+++.+|+++  ++.++++++++.+.++++++++++|+||||.++
T Consensus       119 ~~l~----~~Gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~  191 (412)
T d1bw0a_         119 TAIC----DAGDYALVPQPGFPHYETVCKAY---GIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNF  191 (412)
T ss_dssp             HHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             hhhh----ccccceeeeeccchhhhhhhhcc---CccccccccccccccchhhHHHHhhhhccccccccccccccccccc
Confidence            9988    89999999999999998888777   99999999864  457899999999999999999999999999998


Q ss_pred             c---HHHHHHHHHhcCcEEEEecccccCcc----cc-------ccCcccccEEEeccccccCCCC--ceEEEEecCCCCc
Q psy8850         154 P---ILEIGELCRSKGVIFHCDAAQAVGKI----DI-------NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR  217 (397)
Q Consensus       154 ~---l~~i~~l~~~~gi~livD~a~~~~~~----~~-------~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~  217 (397)
                      +   +++|+++|++|+++||+|++|+....    +.       +.......+++.|++|.++.+|  +|++++.+.....
T Consensus       192 ~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~  271 (412)
T d1bw0a_         192 SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNG  271 (412)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSC
T ss_pred             hhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcc
Confidence            8   56788889999999999999972211    10       1111123467789999555444  7999988765443


Q ss_pred             cccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEE
Q psy8850         218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS  297 (397)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  297 (397)
                      ....... ........+.....+..+.....+...+++.+..+++.++++.+.+.|.+ ..++.+..+.+   +..++..
T Consensus       272 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~-~~g~~~~~p~g---g~~l~~~  346 (412)
T d1bw0a_         272 PSFLEGL-KRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-CIGLAPTMPRG---AMYLMSR  346 (412)
T ss_dssp             HHHHHHH-HHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCB---TTEEEEE
T ss_pred             hhhhhhh-ccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHH-hcCceecCCCC---ceEEEEe
Confidence            2111000 00001112222222222222222333456788899999999999999988 77888765544   4445555


Q ss_pred             ec-----C-CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         298 FN-----F-IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       298 ~~-----~-~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      ++     + .++.++.+.|.   ||.+.||..|..                   .+++||++.  .+++++++++++|++
T Consensus       347 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~-------------------~g~iRis~~--~~~e~l~eal~Rl~~  405 (412)
T d1bw0a_         347 IDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-------------------PGFTRLTTT--RPVEVYREAVERIKA  405 (412)
T ss_dssp             ECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred             CChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCC-------------------CCeEEEEEc--CCHHHHHHHHHHHHH
Confidence            54     1 24567777763   999999976543                   378999986  479999999999999


Q ss_pred             HHHHHH
Q psy8850         369 KVKKLR  374 (397)
Q Consensus       369 ~~~~~~  374 (397)
                      +++++.
T Consensus       406 ~l~~~~  411 (412)
T d1bw0a_         406 FCQRHA  411 (412)
T ss_dssp             HHHHHB
T ss_pred             HHHhcC
Confidence            988764

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-30  Score=240.62  Aligned_cols=328  Identities=10%  Similarity=0.067  Sum_probs=231.0

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .|+|+.+++++.+.+..-.    . .|... ...+..+.+.+.+++.+|.  ++++|++|+|+++|+..++.+++    +
T Consensus        11 f~~p~~i~eal~~~~~~~~----~-~Y~~~-~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~----~   80 (361)
T d1d2fa_          11 FATAPCIIEALNQRLMHGV----F-GYSRW-KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS----E   80 (361)
T ss_dssp             SCCCHHHHHHHHHHHTTCC----C-CCCCS-CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS----C
T ss_pred             CCCCHHHHHHHHHHHhCCC----C-CCCCC-CCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc----c
Confidence            4778999999999885411    1 12211 1133455566666666675  56789999999999999999998    8


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC---CCCCCCHHHHHHHhcC-CceEEEEecccCccccccc---HHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP---ILE  157 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~---~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~---l~~  157 (397)
                      +||+|++++|.|+.+...+...   |.+++.++.+   +++.+|++.+++.+.+ +++++++++++||||.+++   +++
T Consensus        81 ~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~  157 (361)
T d1d2fa_          81 TGEGVVIHTPAYDAFYKAIEGN---QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI  157 (361)
T ss_dssp             TTCEEEEEESCCHHHHHHHHHT---TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred             cccccccccccccchhHHHHhh---cceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhh
Confidence            9999999999999998887777   8888888775   2346899999998854 8999999999999999988   678


Q ss_pred             HHHHHHhcCcEEEEecccccCcc------ccccCcccccEEEeccccccCCC--CceEEEEecCCC-CccccccccCCcc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKI------DINIQNYKVDLMSFSAHKIYGPK--GIGALYIRRNPR-TRIEAQIHGGGHE  228 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~------~~~~~~~~~d~~~~s~~K~~g~~--g~g~~~~~~~~~-~~~~~~~~~~~~~  228 (397)
                      |+++|+++|++||+|++|+....      +......+..+++.|++|.++.+  ++|++++..... .........    
T Consensus       158 i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~----  233 (361)
T d1d2fa_         158 MADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKG----  233 (361)
T ss_dssp             HHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHT----
T ss_pred             hhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhhccc----
Confidence            99999999999999999873221      11111123457888999944433  468877764321 111111111    


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHH
Q psy8850         229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESL  306 (397)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  306 (397)
                       ....++++...+.+...+++...+..++.+..+.++++.+.+.+.+.++++.+..+.+   +..+++.++  +.++.++
T Consensus       234 -~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~g---g~~~~~~l~~~~~~~~~~  309 (361)
T d1d2fa_         234 -RDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQS---TYLAWLDLRPLNIDDNAL  309 (361)
T ss_dssp             -TSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSB---CSEEEEECGGGCCCHHHH
T ss_pred             -ccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccccccCc---eeEEEEEccCCCCCHHHH
Confidence             0112234444444444455544445677778888888888888777566766554433   445566664  4678888


Q ss_pred             HHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       307 ~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      ...|.   ||.+.+|..|..                 .+.+++|||++  .+++++++.+++|+++++++|
T Consensus       310 ~~~Ll~~~gv~v~pG~~F~~-----------------~~~~~vRis~~--~~~e~l~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         310 QKALIEQEKVAIMPGYTYGE-----------------EGRGFVRLNAG--CPRSKLEKGVAGLINAIRAVR  361 (361)
T ss_dssp             HHHHHHTTCEECEEGGGGCG-----------------GGTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCEEEEeccccCC-----------------CCCCEEEEEEc--CCHHHHHHHHHHHHHHHHhcC
Confidence            88763   899999976643                 12478999986  478999999999999998875

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.98  E-value=1.1e-30  Score=243.06  Aligned_cols=327  Identities=11%  Similarity=0.072  Sum_probs=230.9

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .++|+.+++++.+++..-.    . .|.......+..+.+.+.+.+.+|.  ++++|++++|+++++.+++.++.    +
T Consensus        45 f~~p~~i~~a~~~a~~~~~----~-~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~----~  115 (395)
T d1xi9a_          45 FQPPEHMKEAYCKAIKEGH----N-YYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL----D  115 (395)
T ss_dssp             CCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----C
T ss_pred             CCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhc----C
Confidence            4678999999999886521    1 2222222233444455555555564  56789999999999999999988    8


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG  159 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~  159 (397)
                      +||+|++.+|+|+.+...+...   |.+++.++..  .++.+|++++++.+.++++++++++|+||||.+++   +++|+
T Consensus       116 ~Gd~vlv~~P~y~~~~~~~~~~---g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~  192 (395)
T d1xi9a_         116 PGDEILVPGPSYPPYTGLVKFY---GGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEIL  192 (395)
T ss_dssp             TTCEEEEEESCCHHHHHHHHHT---TCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred             CCCEEEEcCCccccchhhhhhc---CCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHH
Confidence            9999999999999998888887   9999988865  35678999999999999999999999999999999   56789


Q ss_pred             HHHHhcCcEEEEecccccCcc------ccccCcccccEEEeccccccCCCC--ceEEEEecCC--CCccccccccCCccc
Q psy8850         160 ELCRSKGVIFHCDAAQAVGKI------DINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNP--RTRIEAQIHGGGHEY  229 (397)
Q Consensus       160 ~l~~~~gi~livD~a~~~~~~------~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~--~~~~~~~~~~~~~~~  229 (397)
                      ++|++||++|+.|++|.....      +.........+++.|++|.++.+|  +|++++....  ...+......   ..
T Consensus       193 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~---~~  269 (395)
T d1xi9a_         193 NIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDR---LA  269 (395)
T ss_dssp             HHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHH---HH
T ss_pred             hhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHH---hh
Confidence            999999999999999873221      111222234588899999666445  6887765322  1222111100   00


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CChHHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESL  306 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  306 (397)
                      .. ...++.....+...+++...+++++.++.++++++.+.+.|++ ++++.+..+.+   +..+++.++.   .++.++
T Consensus       270 ~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~g---g~~~~~~l~~~~~~~~~~~  344 (395)
T d1xi9a_         270 RI-RLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPGISTTKPQG---AFYIFPKIEVGPWKNDKEF  344 (395)
T ss_dssp             HH-TCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STTEECCCCCB---SSEECCEECSCSCSSHHHH
T ss_pred             cC-CCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCceecCCCe---eEEEeEECCCCCCCCHHHH
Confidence            01 1123333333333445433456788889999999999999998 77776654433   4455566653   345666


Q ss_pred             HHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       307 ~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      ...+.   ||.+.||..|.+                 .+.+++||+++  .+.+++++++++|.+++++
T Consensus       345 ~~~ll~~~gV~v~PG~~Fg~-----------------~~~~~~Ris~~--~~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         345 VLDVLHNAHVLFVHGSGFGE-----------------YGAGHFRAVFL--PPIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             HHHHHHHHCEECEEGGGGCG-----------------GGTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEEcChhhCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence            65543   999999977653                 12378999986  4789999999999998865

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=2.9e-29  Score=235.36  Aligned_cols=344  Identities=13%  Similarity=-0.019  Sum_probs=253.0

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-----cEEEeCChhHHHHHHHHHhHhh
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-----EIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-----~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      +.+++++.+.+.+.+.....+.     ...+...+...++.+++++++|+|..     ...+|+|||+|+.+++.+....
T Consensus        64 t~~~~~~~~l~~~~~~~N~~~~-----~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~  138 (450)
T d1pmma_          64 TWDDENVHKLMDLSINKNWIDK-----EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR  138 (450)
T ss_dssp             CCCCHHHHHHHHHTTTCBTTCT-----TTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhcCCCCc-----ccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHH
Confidence            4678888888888776644322     22345667888899999999998642     2799999999999998877643


Q ss_pred             hc--------cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850          82 YK--------KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        82 ~~--------~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~  152 (397)
                      +.        .....++++...|.+..+++..+   |++++.||.++ ++.+|+++|+++++++|.+|+++.++|.||.+
T Consensus       139 ~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~---gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~  215 (450)
T d1pmma_         139 WRKRMEAAGKPTDKPNLVCGPVQICWHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNY  215 (450)
T ss_dssp             HHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHT---TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBB
T ss_pred             HHHHhhhcCCCCCCceEEecccHHHHHHHHHHc---CCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCc
Confidence            21        22346788888999999998888   99999999985 69999999999999999999999999999999


Q ss_pred             ccHHHHHHH------HHhcCcEEEEecccccCccccccC-------cccccEEEecccc-ccCCCCceEEEEecCCCCcc
Q psy8850         153 QPILEIGEL------CRSKGVIFHCDAAQAVGKIDINIQ-------NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI  218 (397)
Q Consensus       153 ~~l~~i~~l------~~~~gi~livD~a~~~~~~~~~~~-------~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~  218 (397)
                      .|+++|.++      |+++|+++|||++++++..+++..       -.++|++++|+|| +++|.|+|+++++++....-
T Consensus       216 dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~  295 (450)
T d1pmma_         216 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQ  295 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCG
T ss_pred             cccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhh
Confidence            998877766      467899999999998776544322       2369999999999 67798999999986533211


Q ss_pred             ----ccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC-CCCc
Q psy8850         219 ----EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPH  292 (397)
Q Consensus       219 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~  292 (397)
                          .....++........++.+...+.++...+..+ .+++.++.++..+++++|.+.|++ .+++.+..+... ....
T Consensus       296 ~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~~~el~~~~~p~~~l~  374 (450)
T d1pmma_         296 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGIP  374 (450)
T ss_dssp             GGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCEEEEEECCTTTBSS
T ss_pred             hcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEeCCCCCCceE
Confidence                111122222222233444555566665665544 668999999999999999999999 888888754221 1123


Q ss_pred             eEEEEec-----CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850         293 NLNISFN-----FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL  365 (397)
Q Consensus       293 ~~~~~~~-----~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  365 (397)
                      ++.|.+.     +.+..++...|.  |..+.. ....+               .......+|+.+...+|.+++|++++.
T Consensus       375 ~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~-~~~p~---------------~~~~~~~lRvvv~~~~t~e~~d~lv~d  438 (450)
T d1pmma_         375 AVCFKLKDGEDPGYTLYDLSERLRLRGWQVPA-FTLGG---------------EATDIVVMRIMCRRGFEMDFAELLLED  438 (450)
T ss_dssp             EEEEEECTTCCCSSCHHHHHHHHHTTTCBCCE-EECCT---------------TCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEecCCcccCCCCHHHHHHHHHHcCCeeec-cCcCC---------------CcCCcEEEEEEccCCCCHHHHHHHHHH
Confidence            5667664     244567777776  543321 11111               001126799999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy8850         366 LKMKVKKLRE  375 (397)
Q Consensus       366 l~~~~~~~~~  375 (397)
                      |+++++++++
T Consensus       439 l~~~v~~l~~  448 (450)
T d1pmma_         439 YKASLKYLSD  448 (450)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.97  E-value=3.6e-30  Score=239.64  Aligned_cols=325  Identities=12%  Similarity=0.063  Sum_probs=224.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      |+|+.|++++.+++..-.    . .|..+  ..+..+.+.+.+++.+|.  ++++|++|+|+++|+.+++.+++    ++
T Consensus        44 ~~p~~v~~al~~~~~~~~----~-~Y~~g--~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~----~p  112 (394)
T d1c7na_          44 KNPPELIEGLKKYLDETV----L-GYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT----KP  112 (394)
T ss_dssp             CCCHHHHHHHHHHHHHCC----C-SSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----CT
T ss_pred             CCCHHHHHHHHHHHhCCC----c-CCCCC--CHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcccc----cc
Confidence            678999999999887511    1 22211  223444455555555564  67789999999999999999988    89


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC---CCCCCCHHHHHHHhc-CCceEEEEecccCccccccc---HHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILEI  158 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~---~~~~~d~~~l~~~i~-~~~~~v~~~~~~~~tG~~~~---l~~i  158 (397)
                      ||+|++..|.|+.+.......   |.+.+.++..   ..+.+|.+.++.++. ++++++++++||||||.+++   +++|
T Consensus       113 gd~vi~~~p~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l  189 (394)
T d1c7na_         113 GDGVIIITPVYYPFFMAIKNQ---ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKI  189 (394)
T ss_dssp             TCEEEECSSCCTHHHHHHHTT---TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred             ccccccccCcccchhhHHhhh---hhcccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhh
Confidence            999999999999998887776   8888887764   234578888888775 57999999999999999999   5678


Q ss_pred             HHHHHhcCcEEEEecccccCcc----ccccC-----cccccEEEeccccccCCCC--ceEEEEecCCCCc-cccccccCC
Q psy8850         159 GELCRSKGVIFHCDAAQAVGKI----DINIQ-----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR-IEAQIHGGG  226 (397)
Q Consensus       159 ~~l~~~~gi~livD~a~~~~~~----~~~~~-----~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~-~~~~~~~~~  226 (397)
                      +++|+++|++||+|++|+....    .....     .....+++.|++|.++..|  +|++++++..+.. +......  
T Consensus       190 ~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~--  267 (394)
T d1c7na_         190 KDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA--  267 (394)
T ss_dssp             HHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH--
T ss_pred             hccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhh--
Confidence            9999999999999999973211    00000     1135688889999555444  5777766433222 2111110  


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChH
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE  304 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  304 (397)
                          ...+........+.........+..+++.+.+.++++.+.+.++...+++.+..+++   +.++++.++.  .++.
T Consensus       268 ----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g---~~~~~~~~~~~~~~~~  340 (394)
T d1c7na_         268 ----TSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEG---TYLQWIDFRALKMDHK  340 (394)
T ss_dssp             ----TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSB---SSEEEEECGGGCCCHH
T ss_pred             ----ccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCCCc---eeEEEEECCCCCCCHH
Confidence                011122222333332333333445677778888888888888877556665544433   4456777763  5778


Q ss_pred             HHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       305 ~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      ++.+.|.   ||.+.+|..|.+                 .+.+++||+++  .+++++++++++|+++++++|
T Consensus       341 ~~~~~Ll~~~gV~v~pG~~Fg~-----------------~~~~~iRis~~--~~~e~i~eal~rl~~~l~~Lk  394 (394)
T d1c7na_         341 AMEEFMIHKAQIFFDEGYIFGD-----------------GGIGFERINLA--APSSVIQESLERLNKALKDLK  394 (394)
T ss_dssp             HHHHHHHHTTCCCCEEGGGGCG-----------------GGTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCEEEEcchhhCC-----------------CCCCEEEEEEe--CCHHHHHHHHHHHHHHHHhcC
Confidence            8877763   899999977653                 12478999997  478999999999999998874

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=3.8e-29  Score=231.33  Aligned_cols=315  Identities=13%  Similarity=0.100  Sum_probs=222.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      ++|+.+++++.+.+.+-.    . .|.......+..+.+.+.+....+  .+++++++|+|+++|+..++.+++    ++
T Consensus        41 ~~p~~i~~~~~~~~~~~~----~-~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~  111 (375)
T d1o4sa_          41 PTPEPVVEEAVRFLQKGE----V-KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL----DP  111 (375)
T ss_dssp             CCCHHHHHHHHHHHTTCC----C-CCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC----CT
T ss_pred             CCCHHHHHHHHHHHhcCC----c-CCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHh----CC
Confidence            468899999998875411    1 222222223334444444444444  467789999999999999999998    89


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHH
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE  160 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~  160 (397)
                      |+.|++.+|+|+.+.......   +.....++.+  ..+.+|.+.++....++++++++++|+||||.+++   +++|++
T Consensus       112 gd~vlv~~P~y~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~  188 (375)
T d1o4sa_         112 GDEVIVFSPVWVSYIPQIILA---GGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVR  188 (375)
T ss_dssp             TCEEEEEESCCTTHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CCEEEEccCccccchhhhhcc---ccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHH
Confidence            999999999999998887776   7787877776  35678899999999999999999999999999998   567888


Q ss_pred             HHHhcCcEEEEecccccCcccc------c-cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccc
Q psy8850         161 LCRSKGVIFHCDAAQAVGKIDI------N-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGL  231 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~~------~-~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
                      +|++|+++||+|++|.......      . ....+..+++.|++|.++.+|  +|+++.+++....+.......      
T Consensus       189 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~~~------  262 (375)
T d1o4sa_         189 LAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHT------  262 (375)
T ss_dssp             HHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHH------
T ss_pred             hHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccchhhhhhhhccc------
Confidence            9999999999999987433211      1 122356789999999666444  799888865544433222110      


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC
Q psy8850         232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK  311 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  311 (397)
                       ........   ...+............+.+.++++.+.+.|++  .++.+..+.+   +.++++.+++ ++.++...+.
T Consensus       263 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~--~g~~~~~p~g---g~f~~~~~~~-~~~~~~~~ll  332 (375)
T d1o4sa_         263 -TSCINTVA---QYAALKALEVDNSYMVQTFKERKNFVVERLKK--MGVKFVEPEG---AFYLFFKVRG-DDVKFCERLL  332 (375)
T ss_dssp             -TCSCCHHH---HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCSB---SSEEEEECSS-CHHHHHHHHH
T ss_pred             -cccccccc---hhhhhhhcccchhhhHHHHHHHHHHHHHHHHh--cCceEecCCc---cEEEEEECCC-CHHHHHHHHH
Confidence             11111111   11222333334556677888889999999988  5766655433   4566777775 4556655543


Q ss_pred             ---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         312 ---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       312 ---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                         ||.+.+|..|..                   .++|||+++  .+++++++++++|+++++
T Consensus       333 ~~~gV~v~pG~~F~~-------------------~g~iRis~~--~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         333 EEKKVALVPGSAFLK-------------------PGFVRLSFA--TSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             HHHCEECEEGGGGTC-------------------TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             HhCCEEEEEccccCC-------------------CCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence               999999976643                   378999997  489999999999998874

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.97  E-value=1.5e-28  Score=225.52  Aligned_cols=308  Identities=14%  Similarity=0.101  Sum_probs=217.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      .++|+.+++++.+.......+|+.           ...++++++++++++++++|++++|+++++.+++..+.      +
T Consensus        34 ~~~p~~~~~a~~~~~~~~~~Yp~~-----------~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~------~   96 (355)
T d1lc5a_          34 LGMPVSVKRALIDNLDCIERYPDA-----------DYFHLHQALARHHQVPASWILAGNGETESIFTVASGLK------P   96 (355)
T ss_dssp             TCCCHHHHHHHHHTGGGGGSCCCT-----------TCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC------C
T ss_pred             CCCCHHHHHHHHHHHHHhccCCCC-----------ChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhc------c
Confidence            457889999999877664333322           12578999999999999999999999998888776542      3


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHHHHHHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELC  162 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~  162 (397)
                      +.+++..|.|+.+.......   +.++..+|++ +++....+++++++.++++++++++|+||||.+++   +++|+++|
T Consensus        97 ~~~~v~~p~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a  173 (355)
T d1lc5a_          97 RRAMIVTPGFAEYGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRC  173 (355)
T ss_dssp             SEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             ccccccCCccceeccccccc---cccceeeeeeccCCccceeeeeeccccccceeeeecccCcccccchhhhhhhhhhhc
Confidence            45555667787776666555   7888888886 33333446678888899999999999999999998   56788889


Q ss_pred             HhcCcEEEEecccccCcc-----ccccCcccccEEEeccccccCCCC--ceEEEEecCCCCc-cccccccCCccccccCC
Q psy8850         163 RSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR-IEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  234 (397)
                      ++|++++|+|++|.....     .......+..+++.|++|.+|.+|  +|+++++++.... +....         .+.
T Consensus       174 ~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~---------~~~  244 (355)
T d1lc5a_         174 KSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ---------MPW  244 (355)
T ss_dssp             HHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS---------CTT
T ss_pred             cccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHHhhc---------CCc
Confidence            999999999999873211     111222345688999999766445  7998887543222 22111         011


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--C
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--D  312 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~  312 (397)
                      ..+.....+..++++. .+.+.+.++++++.++++.+.|.+ ++++.+... .   +.++++.++. +..++.+.|.  |
T Consensus       245 ~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~p~-~---~~f~~~~~~~-~~~~~~~~L~~~g  317 (355)
T d1lc5a_         245 SVNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQ-LPLLTVYPG-R---ANYLLLRCER-EDIDLQRRLLTQR  317 (355)
T ss_dssp             CSCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHT-STTEEECCC-S---SSEEEEEESC-TTCCHHHHHHTTT
T ss_pred             cccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHhh-cCCcEECCC-C---CEEEEEECCC-CHHHHHHHHHHCC
Confidence            2333333433344442 235667788888999999999999 888876532 2   3556777764 4556666665  8


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      |.++++..|..                 ...++|||+++   +++++++++++|++++
T Consensus       318 v~vr~~~~f~~-----------------~~~~~iRis~~---~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         318 ILIRSCANYPG-----------------LDSRYYRVAIR---SAAQNERLLAALRNVL  355 (355)
T ss_dssp             EECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             cEEEeCccCCC-----------------CCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence            99998865532                 11389999986   6899999999999863

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.97  E-value=1.4e-28  Score=230.58  Aligned_cols=328  Identities=13%  Similarity=0.131  Sum_probs=226.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--C-CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--D-PREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~-~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.+++++++++.+..  +..-.|.......+..+.+.+.+.+.+|.  . .++|++|+|+++|+..++++++    +
T Consensus        39 ~~p~~i~eal~~a~~~~~--~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~----~  112 (418)
T d2r5ea1          39 HAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV----D  112 (418)
T ss_dssp             CCCHHHHHHHHHHHTCSC--GGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC----C
T ss_pred             CCCHHHHHHHHHHHhCCC--ccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhcc----c
Confidence            357889999999876421  00001222222234444455555555565  3 4689999999999999999998    8


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCC----------CCCCHHHHHHHhcCCceEEEEecccCccccccc
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN----------GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP  154 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~----------~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~  154 (397)
                      +||.|+++.|.|+.+.......   |.+++.++++.+          ..++.+++.+....+++++++++++||||.+++
T Consensus       113 ~gd~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s  189 (418)
T d2r5ea1         113 EGDEVIIIEPFFDCYEPMVKAA---GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMD  189 (418)
T ss_dssp             TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             cccceeccccccchhhHHHHHc---CCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCcCcccccccc
Confidence            9999999999999999888887   999999988643          246788888888899999999999999999999


Q ss_pred             ---HHHHHHHHHhcCcEEEEecccccCccc-------cccC-cccccEEEeccccccCCCC--ceEEEEecCCCCccccc
Q psy8850         155 ---ILEIGELCRSKGVIFHCDAAQAVGKID-------INIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQ  221 (397)
Q Consensus       155 ---l~~i~~l~~~~gi~livD~a~~~~~~~-------~~~~-~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~  221 (397)
                         +++|+++|++||++||.|++|......       ..+. .....+++.|++|.++.+|  +|+++.+++..+.+...
T Consensus       190 ~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~~~  269 (418)
T d2r5ea1         190 RAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMV  269 (418)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccccchhhhhhhhc
Confidence               467889999999999999999743221       1111 1245688899999555334  79988887655444332


Q ss_pred             cccCCccccccCCCCchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceE
Q psy8850         222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLA-------RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL  294 (397)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  294 (397)
                      ...      ...+.++..+.+.. ..+...       .+.+.+++++++.+++.+.+.|++ + ++.+..+++   +.++
T Consensus       270 ~~~------~~~~~~~~~q~a~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~P~g---g~f~  337 (418)
T d2r5ea1         270 HQN------CVYTCATPIQEAIA-VGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE-V-GMNPTVPQG---GYFM  337 (418)
T ss_dssp             HTT------TTCSCCHHHHHHHH-HHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH-T-TCEEEECSB---SSEE
T ss_pred             ccc------cccccccchhhhcc-ccccccccccccchhhHHHHHHHHHHhhhhHHhhHhh-c-CCcccCCCc---eeEE
Confidence            211      11122332232222 222211       224678889999999999999999 4 777766544   5566


Q ss_pred             EEEecC-------------CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         295 NISFNF-------------IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       295 ~~~~~~-------------~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      ++.++.             .+..++.+.|.   ||.+.||..|....            ....+.++|||++..  ++++
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~------------~~~~g~~~iRis~~~--~~e~  403 (418)
T d2r5ea1         338 VADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP------------NKHLGEDFVRYCFFK--KDEN  403 (418)
T ss_dssp             EEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGG------------GHHHHTTEEEEECCS--CHHH
T ss_pred             EEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCC------------CccCCCCEEEEEecC--CHHH
Confidence            666642             23456666663   99999998775410            001124789999964  7899


Q ss_pred             HHHHHHHHHHHH
Q psy8850         359 IDFTIKLLKMKV  370 (397)
Q Consensus       359 i~~~~~~l~~~~  370 (397)
                      +++++++|++++
T Consensus       404 l~~a~~rl~~~l  415 (418)
T d2r5ea1         404 LQKAAEILRKWK  415 (418)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.3e-28  Score=226.42  Aligned_cols=320  Identities=14%  Similarity=0.072  Sum_probs=230.0

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCC-cEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPR-EIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~-~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.+++++.+.+..-.    . .|.......+..+.+.+.+.+.+|.  .++ +|++|+|+++|+.++++++.    +
T Consensus        39 ~~p~~i~~a~~~~~~~~~----~-~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~----~  109 (382)
T d1u08a_          39 DGPRYLQERLAHHVAQGA----N-QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV----R  109 (382)
T ss_dssp             CCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC----C
T ss_pred             CCCHHHHHHHHHHHhcCC----C-CCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc----c
Confidence            567899999998886511    1 2322222233444444444445565  344 59999999999999999998    8


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccH---HHHHH
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGE  160 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l---~~i~~  160 (397)
                      +|+.|++++|.|+.+.......   |..+..++.+. .+.+|++++++++.++++++++++|+||||.+++.   ++|++
T Consensus       110 ~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~  186 (382)
T d1u08a_         110 NGDEVICFDPSYDSYAPAIALS---GGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQ  186 (382)
T ss_dssp             TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             ccceEEEecccccchhhhhhhc---cccceecccccccccCCHHHHhhhhccCccEEEECCCCcccccccccccchhhhh
Confidence            9999999999999998887777   88888887764 55789999999999999999999999999999994   66778


Q ss_pred             HHHhcCcEEEEecccccCccc----cccC----cccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccc
Q psy8850         161 LCRSKGVIFHCDAAQAVGKID----INIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       161 l~~~~gi~livD~a~~~~~~~----~~~~----~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +|+++++.++.|+.+......    ....    ..+..+++.|++|.++.+|  +|+++++++....+.....       
T Consensus       187 ~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~-------  259 (382)
T d1u08a_         187 AIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQ-------  259 (382)
T ss_dssp             HHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHH-------
T ss_pred             hhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchhHHHHHhhhc-------
Confidence            899999999999998733221    1111    1134588999999554334  7998887665544433221       


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC---CChHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLL  307 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  307 (397)
                      ......+.....++..+++...+++.+.++.++++++.+.+.+..  .++.+..+.+   +..+++.++.   .++.++.
T Consensus       260 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~p~g---g~~~~~~~~~~~~~d~~e~~  334 (382)
T d1u08a_         260 YLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE--SRLEILPCEG---TYFLLVDYSAVSTLDDVEFC  334 (382)
T ss_dssp             HHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS--SSCEECCCCB---SSEEEEECTTTCCSCHHHHH
T ss_pred             ccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhcc--CCcEEecCCc---eEEEEEecCCCCCCCHHHHH
Confidence            111233444445555666655556888899999999999999877  6777766544   5567777763   4677777


Q ss_pred             HHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         308 MAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       308 ~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      +.|.   ||.+.||..|..               ...++++||||++.  +++++++++++|++
T Consensus       335 ~~ll~e~gV~v~PG~~F~~---------------~~~~~~~~Ris~~~--~~e~l~~al~RL~~  381 (382)
T d1u08a_         335 QWLTQEHGVAAIPLSVFCA---------------DPFPHKLIRLCFAK--KESTLLAAAERLRQ  381 (382)
T ss_dssp             HHHHHHSCEECEEGGGGCS---------------SCCCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred             HHHHHHCCEEEEcchhhCC---------------CCCCCCEEEEEEeC--CHHHHHHHHHHHhC
Confidence            7663   899999987754               11234789999974  78999998888764

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=1.2e-28  Score=229.16  Aligned_cols=322  Identities=12%  Similarity=0.068  Sum_probs=226.1

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhh
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF   81 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~   81 (397)
                      ++|+.+++++.+......      .|..    ..+..++|+++++++    |  +++++|++|+|+++++..++.++.  
T Consensus        41 ~~p~~~~~al~~~~~~~~------~Y~~----~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~--  108 (389)
T d2gb3a1          41 KTPEVFFERIYENKPEVV------YYSH----SAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA--  108 (389)
T ss_dssp             CCCTHHHHHHHHTCCSSC------CCCC----TTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHhcCCCCC------CCCC----CcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccc--
Confidence            467888888876543222      2222    223455555555554    5  467789999999999999999988  


Q ss_pred             hccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCccccccc---HHH
Q psy8850          82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE  157 (397)
Q Consensus        82 ~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~---l~~  157 (397)
                        ++|+.|++..|.|+.+.......   |..+..++.+. .+..+.+.+...+.++++++++++|+||||.+++   +++
T Consensus       109 --~~gd~V~i~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~  183 (389)
T d2gb3a1         109 --NPGDEILVLEPFYANYNAFAKIA---GVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRY  183 (389)
T ss_dssp             --CTTCEEEEEESCCTHHHHHHHHH---TCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             --cCCCeEEEeCCCCcccccccccc---CccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchHHHHHH
Confidence              89999999999999999888888   88999898874 3445566777788889999999999999999998   678


Q ss_pred             HHHHHHhcCcEEEEecccccCccc-----cccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCcccc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKID-----INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~~-----~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      |+++|++||++||+|++|+.....     ......+..+++.|++|.++.+|  +|+++.+++..........       
T Consensus       184 i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~-------  256 (389)
T d2gb3a1         184 LVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLA-------  256 (389)
T ss_dssp             HHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHH-------
T ss_pred             HHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccchhHHHHHhhhh-------
Confidence            999999999999999999732221     11112245678889999444334  7888876543222111110       


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHh
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI  310 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  310 (397)
                      .....++.....+....+......++...++++++++.+.+.|++ ++...+..+.+   +..+++.++..++.++.+.|
T Consensus       257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~p~~---g~~~~~~lp~~~~~~~~~~l  332 (389)
T d2gb3a1         257 QGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-HGLKRFTKPSG---AFYITAELPVEDAEEFARWM  332 (389)
T ss_dssp             HHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCBCCCSB---SSEEEEECSSSCHHHHHHHH
T ss_pred             hccccccccccccccccccccchhcccccccccccchhhhhhhhh-hccccccCCCc---eEEEEEeCCCCCHHHHHHHH
Confidence            111233334444443444433456788889999999999999999 65544333333   55777888877777777765


Q ss_pred             C--------CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         311 K--------DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       311 ~--------~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .        ++.+.+|..|..              .+..+.+++||++.  .+++++++++++|.+++++.
T Consensus       333 l~e~~l~~~~v~v~pg~~f~~--------------~~~~~~~~iRis~~--~~~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         333 LTDFNMDGETTMVAPLRGFYL--------------TPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             HHSCCBTTEEEECEEGGGGCS--------------STTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhCCEEEEeCccccc--------------CCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHHHh
Confidence            2        577788765543              12223589999986  48899999999999988865

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=3.6e-29  Score=234.89  Aligned_cols=330  Identities=12%  Similarity=0.079  Sum_probs=218.9

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      ++.+.+++.+.+....... . .|......++..+.+.+.+.+..|   +++++|++|+|+++|+.+++.+++    ++|
T Consensus        55 ~~~~~~~~~~~~~~~~~~~-~-~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~----~~G  128 (420)
T d1vp4a_          55 RKELAEIAKEIIEKEYHYT-L-QYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL----DDE  128 (420)
T ss_dssp             HHHHHHHHHHHHHHSHHHH-T-SCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC----CTT
T ss_pred             HHHHHHHHHHHHhhCCccc-c-CCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhh----ccc
Confidence            4556677766665421000 0 122222223344444444444445   467789999999999999999988    899


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc---------CCceEEEEecccCccccccc---
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC---------SDTILVSVMLVNNEIGVIQP---  154 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~---------~~~~~v~~~~~~~~tG~~~~---  154 (397)
                      |+|++++|.|+.+...++..   |.+++.+|.++.+ +|++.++..+.         +.+.++++++++||||.+++   
T Consensus       129 d~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~  204 (420)
T d1vp4a_         129 SYCVLDDPAYLGAINAFRQY---LANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEK  204 (420)
T ss_dssp             CEEEEEESCCHHHHHHHHTT---TCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHH
T ss_pred             cccccccccccchhHHHHHH---hhhcccccccccc-cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhh
Confidence            99999999999998887776   9999999988665 67887766542         23456678899999999998   


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCccc-------cccCcccccEEEeccccccCC-CCceEEEEecCCCCccccccccCC
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKID-------INIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGG  226 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~-------~~~~~~~~d~~~~s~~K~~g~-~g~g~~~~~~~~~~~~~~~~~~~~  226 (397)
                      +++|+++|++|++++|+|++|+.....       ......+..+++.|++|++++ ..+|+++.+++.++.+......  
T Consensus       205 ~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~~~~i~~l~~~~~~--  282 (420)
T d1vp4a_         205 RKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQS--  282 (420)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHHH--
T ss_pred             hhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccccccccccccccchhhhhhhhhhhh--
Confidence            578999999999999999998732210       111122455677788885443 2379988887665554332211  


Q ss_pred             ccccccCCCCchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcEEEeCCCCCCCCceEEEEecC-
Q psy8850         227 HEYGLRSGTLATHQIVGMGEAFR--LARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFNF-  300 (397)
Q Consensus       227 ~~~~~~~~~~~~~~~~~l~~al~--~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~-  300 (397)
                          ...+++...+.. ....++  ...+.+.+..+.+++.++.+.+.|++.   ++++.+..+.+   +.++++.+++ 
T Consensus       283 ----~~~~~~~~~q~~-~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~g---g~f~~~~~~~~  354 (420)
T d1vp4a_         283 ----ADLCSPAITHRL-AARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEG---GLFIWLTLPEG  354 (420)
T ss_dssp             ----HHSSCCHHHHHH-HHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSB---SSEEEEECCTT
T ss_pred             ----ccccCchhhhhh-hhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCc---eEEEEEECCCC
Confidence                112233333222 223332  112345555666666666666666653   45777766544   4567778764 


Q ss_pred             CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       301 ~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      .+..++.+.|.  ||.+.||..|...               ....++||||++. .+++++++++++|+++++++++
T Consensus       355 ~d~~~~~~~l~~~gV~v~PG~~F~~~---------------~~~~~~iRls~~~-~~~e~l~~a~~rL~~~l~~~~~  415 (420)
T d1vp4a_         355 FDTWEMFEYAKRKKVFYVPGRVFKVY---------------DEPSPSMRLSFCL-PPDEKIVEGIKRLREVVLEYGK  415 (420)
T ss_dssp             CCTTTTHHHHHHHTEECEEGGGGCTT---------------CCCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCeEEEechhhCCC---------------CCCCCEEEEEeCc-CCHHHHHHHHHHHHHHHHHhhH
Confidence            45666766666  9999999877641               1124799999974 5789999999999999999865

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.96  E-value=6.6e-29  Score=231.91  Aligned_cols=327  Identities=13%  Similarity=0.097  Sum_probs=221.3

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~--~~~~~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      .+.+.+++.+.+....      ....+|....+..++|+++++++    |  +++++|++|+|+++++..++.++.    
T Consensus        46 ~~~~~~~~~~~~~~~~------~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~----  115 (403)
T d1wsta1          46 VETIKKIAVEVLEEHA------DKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL----  115 (403)
T ss_dssp             HHHHHHHHHHHHHHSH------HHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHhCc------ccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHh----
Confidence            3466677777664411      00111222223455566665554    4  567899999999999999999988    


Q ss_pred             cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHH-------HhcCCceEEEEecccCccccccc--
Q psy8850          84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEE-------KICSDTILVSVMLVNNEIGVIQP--  154 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~-------~i~~~~~~v~~~~~~~~tG~~~~--  154 (397)
                      ++|++|++.+|+|+.+...+..+   |.+++.++.+..+. +...+..       ..+..+.++++++++||||.+++  
T Consensus       116 ~~gd~v~~~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~  191 (403)
T d1wsta1         116 NPGDPIVVEAPTYLAAIQAFKYY---DPEFISIPLDDKGM-RVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVD  191 (403)
T ss_dssp             CTTCEEEEEESCCHHHHHHHHTT---CCEEEEEEEETTEE-CHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHH
T ss_pred             hcCCccccCCCcchhhhHHHhhc---cccceeEeecccCC-ccccccccchhhhhccccccccccccccCCCCCccCCHH
Confidence            89999999999999999888777   99999999876442 2222222       22345678889999999999998  


Q ss_pred             -HHHHHHHHHhcCcEEEEecccccCc---c---cc-ccCcccccEEEeccccccCC-CCceEEEEecCCCCccccccccC
Q psy8850         155 -ILEIGELCRSKGVIFHCDAAQAVGK---I---DI-NIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       155 -l~~i~~l~~~~gi~livD~a~~~~~---~---~~-~~~~~~~d~~~~s~~K~~g~-~g~g~~~~~~~~~~~~~~~~~~~  225 (397)
                       +++|+++|++||++||+|++|....   .   ++ .....+..+++.|++|.+++ ..+|+++.++++...+...... 
T Consensus       192 ~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~~i~~~~~~~~~-  270 (403)
T d1wsta1         192 RRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPHLIRKMEIAKQS-  270 (403)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecCcccccccccchHHHHHHHHHHhh-
Confidence             4678889999999999999997221   1   11 12233567889999995453 2489999987655544332211 


Q ss_pred             CccccccCCCCchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cEEEeCCCCCCCCceEEEEecC-C
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFR--LARIEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFNF-I  301 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~  301 (397)
                            .....+.....+..+.+.  .....+.+..+.+.++++.+.+.|.+.++ ++.+..+.+   +.++++.+++ .
T Consensus       271 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~g---g~~~~~~~~~~~  341 (403)
T d1wsta1         271 ------IDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEG---GMFVRVTLPEGI  341 (403)
T ss_dssp             ------HHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSB---SSEEEEECCTTC
T ss_pred             ------hccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCc---eeEEEEECCCCC
Confidence                  111233333333222222  23345778888888899999999987443 455554433   4566777774 3


Q ss_pred             ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         302 EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       302 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      +...+.+.|.  ||.+.||..|....               ...+++||+++. .+++++++++++|++++++..|+
T Consensus       342 ~~~~~~~~l~~~gV~v~pg~~f~~~~---------------~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~~~~k~  402 (403)
T d1wsta1         342 DTKLMMERAVAKGVAYVPGEAFFVHR---------------DKKNTMRLNFTY-VPEETIREGVRRLAETIKEEMKR  402 (403)
T ss_dssp             CTTTTHHHHHHTTEECEEGGGGSTTC---------------CCCSEEEEECSS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCEEEEechhhcCCC---------------CCCCEEEEEecC-CCHHHHHHHHHHHHHHHHHHHhc
Confidence            5566666665  99999998765411               124899999975 57999999999999999877653

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.96  E-value=4.9e-28  Score=227.60  Aligned_cols=296  Identities=18%  Similarity=0.213  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHHh----C----CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          42 AIEKARNEVAQLI----Y----ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        42 ~~~~~~~~la~~~----~----~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      +..++|+++++++    +    +++++|++|+|+++|+.+++.+++    ++||+|+++.|.|+.+...+...  .|.++
T Consensus        85 G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~----~pGd~Vlv~~P~y~~~~~~~~~~--~g~~~  158 (431)
T d1m7ya_          85 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLKWR--TGVEI  158 (431)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTTTT--TCCEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHh--cCcee
Confidence            3455666666654    3    457799999999999999999988    89999999999999988766532  27899


Q ss_pred             EEeccCC--CCCCCHHHHHHHhcC------CceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc--
Q psy8850         114 TYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--  180 (397)
Q Consensus       114 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~--  180 (397)
                      +.++.+.  .+.+|++.+++++.+      +++++++++|+||||.+++   +++|+++|++||++||+|++|+....  
T Consensus       159 v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~  238 (431)
T d1m7ya_         159 VPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS  238 (431)
T ss_dssp             EEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS
T ss_pred             ccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCC
Confidence            9998874  357899999887753      6789999999999999998   67789999999999999999973211  


Q ss_pred             --cccc-------------CcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchh--HH
Q psy8850         181 --DINI-------------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH--QI  241 (397)
Q Consensus       181 --~~~~-------------~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  241 (397)
                        ..++             ...+..+++.|++|.+|..|  +|+++.+++...........       ..+.++..  .+
T Consensus       239 ~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~  311 (431)
T d1m7ya_         239 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS-------FGLVSSQTQHLL  311 (431)
T ss_dssp             SCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGG-------GSCCCHHHHHHH
T ss_pred             CCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhc-------cccccccccchh
Confidence              0000             11134588899999666444  78888875443222211110       11122211  22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-------ChHHHHHHhC---
Q psy8850         242 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAIK---  311 (397)
Q Consensus       242 ~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~---  311 (397)
                      .+.........+.+.+.+++++++++.+.+.|++  .++.+..+.+   +.++++.++..       +..++.+.|.   
T Consensus       312 ~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~gi~~~~p~g---g~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~  386 (431)
T d1m7ya_         312 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK--SGISCLNGNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYEV  386 (431)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTCEECCCCS---SSEEEEECGGGSSSSSHHHHHHHHHHHHHTS
T ss_pred             hhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc--CCcEEecCCc---eeEEEEECccccccCcccCHHHHHHHHHHHC
Confidence            2222223333456778888999999999999988  7888876543   45667777531       1235555552   


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ||.+.||..|...                 .++++||+++. .+++++++++++|+++++++
T Consensus       387 gV~v~PG~~F~~~-----------------~~~~~Ri~~a~-~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         387 HLNISPGSSCHCT-----------------EPGWFRVCFAN-LPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             CEECEEGGGGTCS-----------------STTEEEEECSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeccccCCC-----------------CCCEEEEEeCc-CCHHHHHHHHHHHHHHHHHh
Confidence            9999999876541                 13789999874 46789999999999998874

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.96  E-value=1.1e-28  Score=231.76  Aligned_cols=294  Identities=16%  Similarity=0.169  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHHh----C----CCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          42 AIEKARNEVAQLI----Y----ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        42 ~~~~~~~~la~~~----~----~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      +..++|+++++++    +    +++++|++|+|+++|+.+++.+++    ++||+|+++.|+|+++...+...  .|.++
T Consensus        84 G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~~~~~~--~g~~~  157 (428)
T d1iaya_          84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLRWR--TGVQL  157 (428)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTTTT--TCCEE
T ss_pred             chHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC----CCCCEEEEccCCchHHHHHHHHh--cCCeE
Confidence            4456677766664    3    457899999999999999999988    89999999999999998665432  28899


Q ss_pred             EEeccCC--CCCCCHHHHHHHh------cCCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEecccccCcc--
Q psy8850         114 TYLKPKN--NGLITLSQLEEKI------CSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--  180 (397)
Q Consensus       114 ~~v~~~~--~~~~d~~~l~~~i------~~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~--  180 (397)
                      +.++.+.  ++.+|++++++++      ..+++++++++|+||||.+++   +++|+++|++||++||+|++|+....  
T Consensus       158 v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~  237 (428)
T d1iaya_         158 IPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT  237 (428)
T ss_dssp             EEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSS
T ss_pred             EEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCc
Confidence            9998874  4578998887654      346889999999999999998   57889999999999999999973211  


Q ss_pred             --ccc-----------cCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHH
Q psy8850         181 --DIN-----------IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG  245 (397)
Q Consensus       181 --~~~-----------~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (397)
                        ...           ....+..+++.|++|.++..|  +|+++..++...........        .+..+......+.
T Consensus       238 ~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~  309 (428)
T d1iaya_         238 PQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSS--------FGLVSTQTQYFLA  309 (428)
T ss_dssp             SCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHT--------TSCCCHHHHHHHH
T ss_pred             ccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhc--------ccccccccccchh
Confidence              000           111134588999999555444  78888754332222111111        1122222222222


Q ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCC-------ChHHHHHHhC---C
Q psy8850         246 EA---FRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAIK---D  312 (397)
Q Consensus       246 ~a---l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~---~  312 (397)
                      +.   .++..+.+++..+.+.++++.+.+.|+.  .|+.+..+.+   +.++++.++..       +..++.+.|.   +
T Consensus       310 a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~--~gi~~~~p~g---g~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~g  384 (428)
T d1iaya_         310 AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV--VGIKCLKNNA---GLFCWMDLRPLLRESTFDSEMSLWRVIINDVK  384 (428)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCBCCCSS---SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSC
T ss_pred             hhhhhhccccccccccccccchhHHHHHHHHHh--CCCEEecCCc---ceEEEEECccccccCCCCCHHHHHHHHHHhCC
Confidence            22   2333445777888888999999999987  6777665443   45667776531       1234555552   9


Q ss_pred             cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       313 i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      |.+.||..|..                 ..+++|||+++. .+++++++++++|++++.+
T Consensus       385 V~v~PG~~F~~-----------------~~~g~~Ris~a~-~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         385 LNVSPGSSFEC-----------------QEPGWFRVCFAN-MDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             EECEEGGGGTC-----------------SSSSEEEEECSS-SCHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcchhcCC-----------------CCCCEEEEEeCC-CCHHHHHHHHHHHHHHHhh
Confidence            99999987654                 124899999864 5678999999999998864

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=9.4e-27  Score=219.36  Aligned_cols=314  Identities=15%  Similarity=0.174  Sum_probs=228.4

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCC---------cEEEeCChhHHHHHHHHHhHhhhcc---------------CCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPR---------EIIWTSGATESNNLAIKGAAHFYKK---------------RGK   87 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~---------~i~~~~g~t~a~~~~l~~l~~~~~~---------------~g~   87 (397)
                      .+..++.......++-+++++++|.+.+         ..++|+|||+|+..++.+...+..+               +.-
T Consensus       104 ~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~  183 (476)
T d1js3a_         104 SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL  183 (476)
T ss_dssp             SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred             chhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCce
Confidence            4455667778888999999999998642         3789999999999998876542210               124


Q ss_pred             EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC------ceEEEEecccCcccccccHHHHHHH
Q psy8850          88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGEL  161 (397)
Q Consensus        88 ~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~l~~i~~l  161 (397)
                      +|++++..|+|..+++..+   |+.+..||+++++.+|+++|+++|.+.      +.+|+.+..++.+|.+.|+++|+++
T Consensus       184 vv~~s~~~H~Si~ka~~~l---Gl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i  260 (476)
T d1js3a_         184 VAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPI  260 (476)
T ss_dssp             EEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred             EEEecccccHHHHHHHHhc---CceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHH
Confidence            7899999999999999988   999999999999999999999999752      5688999999999999999999999


Q ss_pred             HHhcCcEEEEecccccCccccc-c----Ccc-cccEEEecccc-ccCCCCceEEEEecCCCCc----ccc-ccc----cC
Q psy8850         162 CRSKGVIFHCDAAQAVGKIDIN-I----QNY-KVDLMSFSAHK-IYGPKGIGALYIRRNPRTR----IEA-QIH----GG  225 (397)
Q Consensus       162 ~~~~gi~livD~a~~~~~~~~~-~----~~~-~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~----~~~-~~~----~~  225 (397)
                      |++||+++|||+++++...... .    ..+ .+|++++++|| ++.|.++|++++++.....    ... ...    +.
T Consensus       261 ~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~  340 (476)
T d1js3a_         261 CHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS  340 (476)
T ss_dssp             HHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------C
T ss_pred             HHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccc
Confidence            9999999999999986554322 1    111 58999999999 6778899999998532110    000 000    00


Q ss_pred             Cc-----cccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec
Q psy8850         226 GH-----EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN  299 (397)
Q Consensus       226 ~~-----~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (397)
                      ..     .... .++.. ...+.++.+++.+ .+++.++.++..++++++.+.|++ .+++.+..++.   ..+++|++.
T Consensus       341 ~~~~~~~~~~~-~~sr~-~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~-~~~fel~~~p~---l~iV~Fr~~  414 (476)
T d1js3a_         341 GLITDYRHWQL-PLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-DPRFEVCAEVT---LGLVCFRLK  414 (476)
T ss_dssp             CSCCCGGGSSS-CSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTEEECSCCC---SSEEEEEES
T ss_pred             ccccccccccc-ccchh-hHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCCeEEECCCc---eEEEEEEcc
Confidence            00     0111 12222 2334555666655 568999999999999999999999 89999987755   556677765


Q ss_pred             CCCh--HHHHHHhC--C-cEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCCHHHHHHHHHHHHHHHHHH
Q psy8850         300 FIEG--ESLLMAIK--D-IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       300 ~~~~--~~~~~~l~--~-i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..+.  .++.+.+.  | +.+.+.                    .-.+..++|+++. ..+++++|+.+++.|+++.+++
T Consensus       415 ~~d~~n~~l~~~l~~~G~~~~s~t--------------------~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l  474 (476)
T d1js3a_         415 GSDGLNEALLERINSARKIHLVPC--------------------RLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL  474 (476)
T ss_dssp             SCHHHHHHHHHHHHHHTSCBCEEE--------------------EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCEEEeee--------------------eECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4322  23444443  2 222211                    0112357999987 5588999999999999998876


Q ss_pred             H
Q psy8850         374 R  374 (397)
Q Consensus       374 ~  374 (397)
                      -
T Consensus       475 l  475 (476)
T d1js3a_         475 L  475 (476)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.7e-27  Score=216.87  Aligned_cols=279  Identities=19%  Similarity=0.179  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCC-EEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCC
Q psy8850          44 EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG  122 (397)
Q Consensus        44 ~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~-~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~  122 (397)
                      .+++++|++++|+++++|++|+|+++|+.++++++.    ++|| +|+++.|+|+.+.......   |.+++.++.++++
T Consensus        59 ~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~----~pgd~~Vl~~~P~y~~~~~~~~~~---g~~v~~~~~~~~~  131 (354)
T d1fg7a_          59 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVECRTVPTLDNW  131 (354)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHHHH---TCEEEECCCCTTS
T ss_pred             HHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh----ccccccccccccccccchhhhhcc---Cceeecccccccc
Confidence            579999999999999999999999999999999998    7887 6889999999999888888   9999999998888


Q ss_pred             CCCHHHHHHHhcCCceEEEEecccCcccccccHHH---HHHHHHhcCcEEEEecccccCc----cccccCcccccEEEec
Q psy8850         123 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE---IGELCRSKGVIFHCDAAQAVGK----IDINIQNYKVDLMSFS  195 (397)
Q Consensus       123 ~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~---i~~l~~~~gi~livD~a~~~~~----~~~~~~~~~~d~~~~s  195 (397)
                      .+|++++++++ ++++++++++++||||.+++.++   +.+.+ +++..+++|+++.-..    .+.........+++.|
T Consensus       132 ~~d~~~l~~~~-~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~-~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S  209 (354)
T d1fg7a_         132 QLDLQGISDKL-DGVKVVYVCSPNNPTGQLINPQDFRTLLELT-RGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT  209 (354)
T ss_dssp             CCCHHHHHTSC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHH-TTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred             ccchhhhhhcc-cccceeeccCCCccceeEeeecccccccccc-cccccccccccchhhccccccchhhcccccceEEeC
Confidence            99999999877 47999999999999999998544   44434 4567777777765211    1111222355678899


Q ss_pred             cccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         196 AHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQKRLYNG  272 (397)
Q Consensus       196 ~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al-~~~~~~~~~~~~~~~~~~~~l~~~  272 (397)
                      ++|.+|.+|  +|+++.+++.+..+......         ...+........+++ ...........+++.+.++++.+.
T Consensus       210 ~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  280 (354)
T d1fg7a_         210 LSKAFALAGLRCGFTLANEEVINLLMKVIAP---------YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA  280 (354)
T ss_dssp             SSSTTCCGGGCCEEEEECHHHHHHHHHHSCS---------SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCccccccccccchhhhhhhhhcCc---------cchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHH
Confidence            999766555  79999887666555433211         122222222221222 222223555667788888999999


Q ss_pred             HhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEee
Q psy8850         273 LMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI  350 (397)
Q Consensus       273 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~  350 (397)
                      +.+ ++++....+..   ..++++.++  ++.++.+.|.  ||.++++..+..                  ..+++||++
T Consensus       281 l~~-~~~~~~~~p~~---~~f~~~~~~--~~~~~~~~L~~~gIlvr~~~~~~~------------------~~~~lRisi  336 (354)
T d1fg7a_         281 LKE-IPCVEQVFDSE---TNYILARFK--ASSAVFKSLWDQGIILRDQNKQPS------------------LSGCLRITV  336 (354)
T ss_dssp             HHH-STTEEEECCCS---SSEEEEEET--THHHHHHHHHHTTEECEECTTSTT------------------CTTEEEEEC
T ss_pred             HHh-CCCcceeCCCC---ceEEEEeCC--CHHHHHHHHHHCCcEEecCCCCCC------------------CCCEEEEEe
Confidence            999 88775554433   456677775  4667777776  899987654321                  138999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy8850         351 GRFTTEKEIDFTIKLLK  367 (397)
Q Consensus       351 ~~~~~~~~i~~~~~~l~  367 (397)
                      +   +++++++++++|+
T Consensus       337 g---t~ee~~~~l~aLk  350 (354)
T d1fg7a_         337 G---TREESQRVIDALR  350 (354)
T ss_dssp             C---CHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHh
Confidence            7   6899999998886

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-27  Score=223.88  Aligned_cols=327  Identities=13%  Similarity=0.066  Sum_probs=223.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC---CcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP---REIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         8 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      ++|+.+++++++++..-.   ....|.......+..+.+.+.+.+.+|.+.   ++|++|+|+++|+.+++.++.    +
T Consensus        38 ~~p~~v~~a~~~al~~~~---~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~----~  110 (418)
T d1w7la_          38 PPPDFAVEAFQHAVSGDF---MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV----D  110 (418)
T ss_dssp             CCCHHHHHHHHHHTSSCG---GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC----C
T ss_pred             CCCHHHHHHHHHHHhCCC---cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhc----c
Confidence            568899999998876410   000122212223344444444444457652   479999999999999999998    8


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC------------CCCCCHHHHHHHhcCCceEEEEecccCccccc
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN------------NGLITLSQLEEKICSDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~------------~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~  152 (397)
                      +|+.|+++.|.|+.+...+...   |.+++.++.+.            +..+|.+++.....++++++++++++||||.+
T Consensus       111 ~g~~vlv~~p~~~~y~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~  187 (418)
T d1w7la_         111 EGDEVIIIEPFFDCYEPMTMMA---GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKV  187 (418)
T ss_dssp             TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             CCceeeccccccchhHHHHHHc---CCEeeccccccccccccccccccCcccchhhhhccccccccceeccCcCCccccc
Confidence            9999999999999999888888   88888776542            23577888888888999999999999999999


Q ss_pred             cc---HHHHHHHHHhcCcEEEEecccccCc----ccc---ccCc-ccccEEEeccccccCCCC--ceEEEEecCCCCccc
Q psy8850         153 QP---ILEIGELCRSKGVIFHCDAAQAVGK----IDI---NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIE  219 (397)
Q Consensus       153 ~~---l~~i~~l~~~~gi~livD~a~~~~~----~~~---~~~~-~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~  219 (397)
                      ++   +++|+++|++++++||+|++|..-.    .+.   .+.. .+..+++.|++|.++.+|  +|+++++++....+.
T Consensus       188 ~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~  267 (418)
T d1w7la_         188 FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLR  267 (418)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhhhhc
Confidence            98   5678999999999999999987321    111   2221 145788999999544334  899998876555544


Q ss_pred             cccccCCccccccCCCCchhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCc
Q psy8850         220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-------IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH  292 (397)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  292 (397)
                      .....      ...+.++..+.++. .++....       +.+....+.++++++.+.+.|++  .++.+..+.+   +.
T Consensus       268 ~~~~~------~~~~~~~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~P~g---g~  335 (418)
T d1w7la_         268 TVHQN------SVFHCPTQSQAAVA-ESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS--VGLKPLIPQG---SY  335 (418)
T ss_dssp             HHHHT------TTSCCCHHHHHHHH-HHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHT--TTCEEEECSB---SS
T ss_pred             ccccc------ccccccchhhHHHH-HHhhhccccccccccccccchhhhhhhhhhhhhhhhh--cCCcccCCCc---ee
Confidence            33211      11223333333332 3433221       24677788899999999999998  4777776544   55


Q ss_pred             eEEEEecC--------------CChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850         293 NLNISFNF--------------IEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT  355 (397)
Q Consensus       293 ~~~~~~~~--------------~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  355 (397)
                      ++++.+++              ..+.++...|.   ||.+.||..|..      ..-      .....++||||+.  .+
T Consensus       336 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~------~~~------~~~~~~~iRis~~--~~  401 (418)
T d1w7la_         336 FLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYS------VPH------QKHFDHYIRFCFV--KD  401 (418)
T ss_dssp             EEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSC------HHH------HTTSCSEEEEECC--CC
T ss_pred             EEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcC------CCc------cCCCCCEEEEEEc--CC
Confidence            66666641              12355666653   999999987754      000      0112479999986  47


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8850         356 EKEIDFTIKLLKMKV  370 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~  370 (397)
                      ++++++++++|+++.
T Consensus       402 ~~~l~~a~~rl~~~~  416 (418)
T d1w7la_         402 EATLQAMDEKLRKWK  416 (418)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            899999999998765

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3e-26  Score=210.90  Aligned_cols=317  Identities=14%  Similarity=0.111  Sum_probs=233.1

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      -+|++++++.+++.++.-...  .........+...++++.|++++|.+  ..++.++|+.|+..++.++.    .+++.
T Consensus        53 ~~p~v~~a~~~a~~~~G~~~~--~sr~~~g~~~~~~~lE~~LA~~~g~e--~al~~~SG~~an~~~i~al~----~~~d~  124 (383)
T d1bs0a_          53 HHPQIIRAWQQGAEQFGIGSG--GSGHVSGYSVVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAMM----AKEDR  124 (383)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCC--SBTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTCE
T ss_pred             CCHHHHHHHHHHHHHhCCCCC--ccccccCcchHHHHHHHHHHHhcCCC--ceEEecccchhhHHHHHhhc----CCCce
Confidence            378999999999988542222  12222233568899999999999977  78888999999999999988    79999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecccCcccccccHHHHHHHHHhc
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRSK  165 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~  165 (397)
                      |++....|.+........   +.+++.++.+     |++++++.+.+   +..+|+++.+.+++|.+.|+++|.++|++|
T Consensus       125 v~~d~~~h~si~~g~~~~---~~~~~~~~hn-----d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~  196 (383)
T d1bs0a_         125 IAADRLSHASLLEAASLS---PSQLRRFAHN-----DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQH  196 (383)
T ss_dssp             EEEETTCCHHHHHHHHTS---SSEEEEECTT-----CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHT
T ss_pred             EEeeccccHHHhhccccC---CCcceEecch-----HHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhc
Confidence            999999999998876655   7888888866     88899888753   567999999999999999999999999999


Q ss_pred             CcEEEEecccccCccccc------cCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchh
Q psy8850         166 GVIFHCDAAQAVGKIDIN------IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH  239 (397)
Q Consensus       166 gi~livD~a~~~~~~~~~------~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (397)
                      |+++++|++|++|....+      ......++++.+++|.+|..| |++.++.+..+.++.....    . ......+..
T Consensus       197 ~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~G-g~v~~~~~~~~~l~~~~~~----~-~~s~~~~p~  270 (383)
T d1bs0a_         197 NGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFARH----L-IYSTSMPPA  270 (383)
T ss_dssp             TCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCHH----H-HSSBCCCHH
T ss_pred             CcEEEeecceeeeecCCcccchHHHcCCccccccccccccccccc-cccccchhHHHHHHhhchh----h-hhcccccch
Confidence            999999999998765332      223357888899999777765 8888876554444332111    1 112234445


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC--CcEe
Q psy8850         240 QIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK--DIAV  315 (397)
Q Consensus       240 ~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~i~~  315 (397)
                      ...+..++++.+.. ..+.+.+++.++..++++.|.+  .++.+...+.    .++.+.+.+ ....++.+.|.  ||.+
T Consensus       271 ~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~--~g~~~~~~~s----~Ii~v~~g~~~~a~~~~~~L~~~Gi~v  344 (383)
T d1bs0a_         271 QAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD--LPFTLADSCS----AIQPLIVGDNSRALQLAEKLRQQGCWV  344 (383)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT--SSCEECSCCS----SBCCEEEESHHHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh--cCCccCCCCC----CEEEEEECCHHHHHHHHHHHHHCCceE
Confidence            55666677777654 4677888899999999999988  4565554332    233344432 22446667776  8877


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      .+..+..                .+.+...+||+++..+|++|||+++++|..+
T Consensus       345 ~~~~~Pt----------------Vp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         345 TAIRPPT----------------VPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             CEECTTS----------------SCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEcCCC----------------CCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            6542211                1233467999999999999999999999864

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=9.9e-27  Score=211.26  Aligned_cols=294  Identities=16%  Similarity=0.086  Sum_probs=210.0

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCChhHHHHHHHHHhHhhh
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLAIKGAAHFY   82 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~i~~~~g~t~a~~~~l~~l~~~~   82 (397)
                      +.++|+.+.+++.+.+....   .+ .+     ......++|++++++++   +++++|++|+|+++++.++++      
T Consensus        30 p~~~p~~i~~~~~~~~~~~~---~~-~y-----p~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~~------   94 (334)
T d2f8ja1          30 PFPFPEDLVDEVFRRLNSDA---LR-IY-----YDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMML------   94 (334)
T ss_dssp             SSCCCHHHHHHHHHHCCTTG---GG-SC-----CCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHHH------
T ss_pred             CCCCCHHHHHHHHHHhhcch---hc-CC-----CCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHhh------
Confidence            34678899999888775411   00 11     11235678999999886   567889999999999887654      


Q ss_pred             ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHH
Q psy8850          83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC  162 (397)
Q Consensus        83 ~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~  162 (397)
                        .+|+|++.+|+|+.+...+..+   |.+++.+|.++++..+     +...++++++++++|+||||.+++.+++.++ 
T Consensus        95 --~~d~v~i~~P~y~~~~~~~~~~---g~~~v~v~~~~~~~~~-----~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~-  163 (334)
T d2f8ja1          95 --MFDRSVFFPPTYSCYRIFAKAV---GAKFLEVPLTKDLRIP-----EVNVGEGDVVFIPNPNNPTGHVFEREEIERI-  163 (334)
T ss_dssp             --HSSEEEECSSCCHHHHHHHHHH---TCCEEECCCCTTSCCC-----CCCCCTTEEEEEESSCTTTCCCCCHHHHHHH-
T ss_pred             --hccccccccccccccccchhcc---CCcccccccccccccc-----ccccccceEEEecccccccceeecHHHhhcc-
Confidence              3589999999999999998888   9999999998766443     2345678999999999999999998888775 


Q ss_pred             HhcCcEEEEecccccCcc---ccccCcccccEEEeccccccCCCC--ceEEEEecCCCCccccccccCCccccccCCCCc
Q psy8850         163 RSKGVIFHCDAAQAVGKI---DINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA  237 (397)
Q Consensus       163 ~~~gi~livD~a~~~~~~---~~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (397)
                      +++++++|+|+++.....   .......+..+++.|++|.++.+|  +|+++.+++....+......         ...+
T Consensus       164 ~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~~---------~~~s  234 (334)
T d2f8ja1         164 LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP---------FNVS  234 (334)
T ss_dssp             HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSCT---------TCSC
T ss_pred             ccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhhcc---------cccc
Confidence            567999999998753221   111222356688999999655444  79999987665555433211         1223


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEe
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAV  315 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~  315 (397)
                      .....+..+.++. .+.+.+..+++.++++++.+.|++ + |+.+..+.    ++++++.++..+..++.+.|.  ||.+
T Consensus       235 ~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~~----g~f~~~~~~~~~~~~~~~~L~~~GI~v  307 (334)
T d2f8ja1         235 YVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE-M-GYRITDSR----GNFVFVFMEKEEKERLLEHLRTKNVAV  307 (334)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH-H-TCEECCCC----SSEEEEECCHHHHHHHHHHHHHTTEEC
T ss_pred             hhhhhhccccccc-ccchhhHHHHHHHHHHHHHHHHHH-C-CCeECCCC----ceEEEEECCCCCHHHHHHHHHHCCCEE
Confidence            3333333334432 345677788999999999999999 4 67766432    345677777656677777776  8877


Q ss_pred             cccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      ++.                        .++|||+++   +.+|+++++++|++
T Consensus       308 r~~------------------------~~~vRis~g---~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         308 RSF------------------------REGVRITIG---KREENDMILRELEV  333 (334)
T ss_dssp             EEE------------------------TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred             CCC------------------------CCeEEEEcC---CHHHHHHHHHHHhc
Confidence            532                        278999987   68899999999876

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.7e-26  Score=212.44  Aligned_cols=320  Identities=15%  Similarity=0.141  Sum_probs=230.1

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEE
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI   89 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~v   89 (397)
                      +|.|++++.+++..+...+..  ........+...++++.+++++|.+  .+++++||++|+..++.++.    +++|.|
T Consensus        61 hp~v~~a~~~a~~~~g~~~~~--sr~~~g~~~~~~~lE~~lA~~~g~e--~al~~~SG~~An~~~i~~l~----~~~d~i  132 (401)
T d1fc4a_          61 HPDLIAAAKAGMDSHGFGMAS--VRFICGTQDSHKELEQKLAAFLGME--DAILYSSCFDANGGLFETLL----GAEDAI  132 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCS--CHHHHCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHC----CTTCEE
T ss_pred             CHHHHHHHHHHHHHhCCCccc--ceeeccCcHHHHHHHHHHHHhhcCC--ceEEecchhhhhHHHHHHhc----CCCcEE
Confidence            899999999999875433322  2222233467889999999999977  78999999999999999888    789999


Q ss_pred             EEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc------CCceEEEEecccCcccccccHHHHHHHHH
Q psy8850          90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC------SDTILVSVMLVNNEIGVIQPILEIGELCR  163 (397)
Q Consensus        90 l~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~------~~~~~v~~~~~~~~tG~~~~l~~i~~l~~  163 (397)
                      ++....|.+....+...   +.++..++..     |.+++++++.      .++.+|+++.+.++.|.+.|++++.++|+
T Consensus       133 ~~d~~~h~s~~~G~~~~---~a~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~  204 (401)
T d1fc4a_         133 ISDALNHASIIDGVRLC---KAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLAD  204 (401)
T ss_dssp             EEETTCCHHHHHHHHTS---CSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHH
T ss_pred             EeCCcchHHHHcccccc---CceEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHh
Confidence            99999999998776655   7788777654     6777776653      24578889999999999999999999999


Q ss_pred             hcCcEEEEecccccCcccccc--------CcccccEEEecccccc-CCCCceEEEEecCCCCccccccccCCccccccCC
Q psy8850         164 SKGVIFHCDAAQAVGKIDINI--------QNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG  234 (397)
Q Consensus       164 ~~gi~livD~a~~~~~~~~~~--------~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
                      +||+++|+|++|++|......        ....+|+++.|++|.+ |+. .|++..+++..+.+.....+    ..+ ..
T Consensus       205 ~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~-Gg~v~g~~~~~~~l~~~~~~----~~~-s~  278 (401)
T d1fc4a_         205 KYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRP----YLF-SN  278 (401)
T ss_dssp             HTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHH----HHH-SC
T ss_pred             hcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCC-cccccCCHHHHHHHHcCChh----hhh-cC
Confidence            999999999999976643211        1125899999999954 554 48888887655544332211    111 22


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHhC--
Q psy8850         235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAIK--  311 (397)
Q Consensus       235 ~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--  311 (397)
                      ..+.....+...+++...+ .+++++++.++.+++++.+.+  .++.+...+    ..++.+.+.+ .....+.+.|.  
T Consensus       279 ~l~p~~~~aa~~~l~~~~~-~~~~~~~l~~~~~~~~~~l~~--~g~~~~~~~----~pIv~v~~~~~~~a~~~~~~L~~~  351 (401)
T d1fc4a_         279 SLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSA--AGFTLAGAD----HAIIPVMLGDAVVAQKFARELQKE  351 (401)
T ss_dssp             CCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH--TTCCBCCSS----SSEEEEEEECHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHhhhccccc-CHHHHHHHHHHHHHHHhhhcc--cCCccCCCC----CCEEEEEECCHHHHHHHHHHHHHC
Confidence            3444455555566665543 477889999999999999988  454444332    3344455442 22345666665  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      ||.+.+-.  .|              ..+.+...||++++..+|++|||+++++|+++.+++.
T Consensus       352 Gi~v~~i~--~P--------------tVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg  398 (401)
T d1fc4a_         352 GIYVTGFF--YP--------------VVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             TEECCEEC--TT--------------SSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CceEEeEC--CC--------------CCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence            77776432  11              0122346699999999999999999999999988764

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.4e-26  Score=218.75  Aligned_cols=320  Identities=15%  Similarity=0.082  Sum_probs=209.6

Q ss_pred             HHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc-
Q psy8850          41 KAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-  118 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~-  118 (397)
                      ....++.+++++++|.+.. ...+++|+|++..+++....+....++++|+++...|+++..++..+   |.+++.|++ 
T Consensus        94 ~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~---g~~~~~v~~~  170 (445)
T d3bc8a1          94 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---GFEPVVIENV  170 (445)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECCE
T ss_pred             HHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHc---CCeeEEEEee
Confidence            4556678889999998753 57888888866554444334334466789999999999999999888   888888754 


Q ss_pred             --CCCCCCCHHHHHHHhcC----CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccc------cccCc
Q psy8850         119 --KNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID------INIQN  186 (397)
Q Consensus       119 --~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~------~~~~~  186 (397)
                        ++++.+|+++|++++.+    ++.+|++++++|++|.+.|+++|+++|++||+++|+|++++.+...      .+...
T Consensus       171 ~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~  250 (445)
T d3bc8a1         171 LEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARV  250 (445)
T ss_dssp             EETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH
T ss_pred             ccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCc
Confidence              56789999999999854    6889999999999999999999999999999999999999876532      12222


Q ss_pred             ccccEEEecccc-ccCCCCceEEEEecCCC-CccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy8850         187 YKVDLMSFSAHK-IYGPKGIGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRIL  263 (397)
Q Consensus       187 ~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~  263 (397)
                      .++|++++|+|| +++|.|.|+++.++... ..+.....+      ...+    .....+.+++..+ .+++....++..
T Consensus       251 ~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~  320 (445)
T d3bc8a1         251 GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG------RASA----SPSLDVLITLLSLGCSGYRKLLKERK  320 (445)
T ss_dssp             SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS------CBCS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhh------cccC----cchHHHHHHHHHHhhhcchhhHHHHH
Confidence            258999999999 78888888888875322 112221111      1111    1222222333333 345666777777


Q ss_pred             HHHHHHHHHHhhhcC---cEEEeCCCCCCCCceEEEEecC------CChHHHHHHhCCcEecccCccCCCCCC--hhhHH
Q psy8850         264 FLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFNF------IEGESLLMAIKDIAVSSGSACTSASLE--PSYVL  332 (397)
Q Consensus       264 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~i~~~~g~~~~~~~~~--~~~~~  332 (397)
                      .+.+++.+.|.+ +.   +..+...+..  .....+.+..      .+..++...|....+.....+.+....  ....+
T Consensus       321 ~~~~~~~~~L~~-l~~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~  397 (445)
T d3bc8a1         321 EMFVYLSTQLKK-LAEAHNERLLQTPHN--PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTF  397 (445)
T ss_dssp             HHHHHHHHHHHH-HHHHTTCCBCCCTTC--SSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEE
T ss_pred             HHHHHHHHHHHH-HHhhcCceeecCCCC--CcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhh
Confidence            777777777765 32   3333333222  2333344321      223455555542212211111111100  01122


Q ss_pred             HhhCCCc-cccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         333 RALGCND-ELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       333 ~~~g~~~-~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ..+|... ......+|++++..+|++|||+++++|++++++++|+
T Consensus       398 ~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~  442 (445)
T d3bc8a1         398 RGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE  442 (445)
T ss_dssp             ETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            2233222 2334679999999999999999999999999999875

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=7.7e-26  Score=205.04  Aligned_cols=311  Identities=15%  Similarity=0.128  Sum_probs=217.1

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g  110 (397)
                      .+.+++...+....+++.|+++-|.+  ..++++||..|+.+++.++.    ++||+|++++..|+++...+... .+.|
T Consensus        50 ~~~Y~R~~nPT~~~LE~~la~LEg~~--~a~~~~SGmaAi~~~l~~l~----~~Gd~vl~~~~~Yg~t~~l~~~~~~~~G  123 (392)
T d1gc0a_          50 GHFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL----RPGDEVLLGNTLYGCTFAFLHHGIGEFG  123 (392)
T ss_dssp             -------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCSHHHHHHHHTGGGGT
T ss_pred             CceecCCCChHHHHHHHHHHHHhCCc--ceeehhhHHHHHHHHHHhhc----cCCCeeecccccchhhhhhhhhhhccCC
Confidence            45566666788999999999999977  67788999999999999988    89999999999999999988765 4459


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      +++.+++..     |+++++++++++|++|+++.|.||+..+.|++.|+++||++|+++++|++.+.+... ....+++|
T Consensus       124 i~~~~~d~~-----d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~-~Pl~~GaD  197 (392)
T d1gc0a_         124 VKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQ-RPLELGAD  197 (392)
T ss_dssp             CEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHC-CGGGGTCS
T ss_pred             cccccCCcc-----CHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCcccc-ChHHhCCC
Confidence            999999765     899999999999999999999999999999999999999999999999998755442 22244899


Q ss_pred             EEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       191 ~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      +++.|.+|+.++.+   .|+++++++...+++....     .....+.++....+.+...++    .+.-+.++..+++.
T Consensus       198 ivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~-----~~~~G~~~~p~da~ll~rgl~----TL~lRm~~~~~nA~  268 (392)
T d1gc0a_         198 LVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGL-----KDMTGAVLSPHDAALLMRGIK----TLNLRMDRHCANAQ  268 (392)
T ss_dssp             EEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHH-----HHHTCCCCCHHHHHHHHHHHT----THHHHHHHHHHHHH
T ss_pred             EEEEecceeecCCcccccccccchhHHHHHHHHHHH-----HHccCCcCChhhHHHHHhccc----cHHHHHHHHHHHHH
Confidence            99999999544333   5888877654433221100     001123444444444444444    34556778888888


Q ss_pred             HHHHHHhhhcCcEEEeCCC--------------CCCCCceEEEEecCCC--hHHHHHHhC--CcEecccCccCC----CC
Q psy8850         268 RLYNGLMESIEEIYINGDM--------------NNRIPHNLNISFNFIE--GESLLMAIK--DIAVSSGSACTS----AS  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~l~--~i~~~~g~~~~~----~~  325 (397)
                      .+.+.|++ .|.+..+..|              ....++++.|.+++..  ...+.+.|+  .....-|...+.    ..
T Consensus       269 ~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~  347 (392)
T d1gc0a_         269 VLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPAS  347 (392)
T ss_dssp             HHHHHHHT-CTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGG
T ss_pred             HHHHHHHh-CCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCcceEeeccCCcChhhcCccc
Confidence            88888888 6665533221              1233677888886321  245666665  344444544321    11


Q ss_pred             ----CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         326 ----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       326 ----~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                          .-+....+..|+.+    +.||||++.    |+.+.+++.|+++++.
T Consensus       348 ~th~~~~~e~r~~~Gi~~----~liRlSVGl----Ed~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         348 MTHSSYTPEERAHYGISE----GLVRLSVGL----EDIDDLLADVQQALKA  390 (392)
T ss_dssp             TTTSSSCHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHcCCCc----CeEEEEeee----CCHHHHHHHHHHHHHh
Confidence                11224456677775    899999997    6666666666666653

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.94  E-value=2e-25  Score=204.31  Aligned_cols=319  Identities=17%  Similarity=0.148  Sum_probs=230.8

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      -+|+++++..+.+..+.....  ....-....+...++++.|++++|.+  ..++.++|..|+..++.++...  ++++.
T Consensus        60 ~~p~v~~a~~~al~~yG~gs~--~Sr~~~G~~~~h~~LE~~lA~~~g~e--~all~~sG~~An~~~i~~l~~~--~~~d~  133 (396)
T d2bwna1          60 QHPVVLAAMHEALEAVGAGSG--GTRNISGTTAYHRRLEAEIAGLHQKE--AALVFSSAYNANDATLSTLRVL--FPGLI  133 (396)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCC--SBTTTBCCBHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHHHHH--STTCE
T ss_pred             CCHHHHHHHHHHHHHhCCCcc--ccccccCCchHHHHHHHHHHHHhCCC--ceeeeecchHHHHHHHHHHhcc--cCCCc
Confidence            478999999999988542222  22222233568889999999999987  6888889999999999887421  57899


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc----CCceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~----~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      |+.....|.+....+...   +.++..++.+     |.+++++++.    .+.++|+++...++.|.+.|+++|+++|++
T Consensus       134 i~~D~~~Hasi~~g~~ls---~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~  205 (396)
T d2bwna1         134 IYSDSLNHASMIEGIKRN---AGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE  205 (396)
T ss_dssp             EEEETTCCHHHHHHHHHS---CCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred             eeehhhhhhccchhhhcc---ccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhh
Confidence            999999999998887766   7888888766     6777777664    246788999999999999999999999999


Q ss_pred             cCcEEEEecccccCccccccC--------cccccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCC
Q psy8850         165 KGVIFHCDAAQAVGKIDINIQ--------NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL  236 (397)
Q Consensus       165 ~gi~livD~a~~~~~~~~~~~--------~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (397)
                      ||+.+++|++|++|.......        .-.+|++++|++|.+|..| |++.++++..+.+.....+    ..| ++.+
T Consensus       206 y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G-g~v~~~~~~i~~l~~~~~~----~if-Stal  279 (396)
T d2bwna1         206 FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GYIAASARMVDAVRSYAPG----FIF-STSL  279 (396)
T ss_dssp             HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EEEEECHHHHHHHHHHCHH----HHT-SBCC
T ss_pred             hcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc-cccchhHHHHHHHHhhcch----hhh-cccC
Confidence            999999999999877532211        1257999999999888876 8988887655555432211    111 2344


Q ss_pred             chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHH-hC--
Q psy8850         237 ATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMA-IK--  311 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~--  311 (397)
                      +...+.+..++++.+.. ...++++++..+.+++++.+.+  .++.+...+    ..++.+.+.+ .....+.+. |+  
T Consensus       280 pp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~--~g~~~~~~~----spIvpv~ig~~~~~~~~a~~lL~e~  353 (396)
T d2bwna1         280 PPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA--LGMPIIDHG----SHIVPVVIGDPVHTKAVSDMLLSDY  353 (396)
T ss_dssp             CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--HTCCBCCCS----SSCEEEECCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--cCCCcCCCC----CCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            55666667778887753 3566678888889999999988  454444322    3455555543 123445555 43  


Q ss_pred             CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       312 ~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      |+.+.+-.+..                .+.+...+||+++..+|.+|||+++++|+++
T Consensus       354 Gi~v~~i~~Pt----------------Vp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         354 GVYVQPINFPT----------------VPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             CEECCEECTTT----------------SCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCc----------------CCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            78776543211                1233467999999999999999999999875

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.94  E-value=7.8e-25  Score=198.45  Aligned_cols=312  Identities=13%  Similarity=0.103  Sum_probs=223.6

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g  110 (397)
                      .+.+++...+....+++.|+++-|.+  ..++++||..|+.+++.+++    ++||+|++++..|..+...+.. +.+.|
T Consensus        54 ~~~Y~R~~nPT~~~LE~~la~LEgg~--~a~~~sSGmaAi~~~l~~ll----~~Gd~vi~~~~~Yg~t~~~~~~~l~~~G  127 (397)
T d1y4ia1          54 GYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC----QQGDHIVSASAIYGCTHAFLSHSMPKFG  127 (397)
T ss_dssp             SSCCCTTSCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESSSCHHHHHHHHTHHHHTT
T ss_pred             CceeeCCCCHHHHHHHHHHHHHhCCc--cceeehHHHHHHHHHHhhcc----CCCCeeeeecccccccchhhhcccCCCc
Confidence            45566667788999999999999987  57778899999999999888    8999999999999999888864 55679


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      ++++.++..     |++.++++++++|++|+++.|.||+..+.|++.|+++||++|+++++|++.+.+...- ...+++|
T Consensus       128 i~~~~vd~~-----d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~-Pl~~GaD  201 (397)
T d1y4ia1         128 INVRFVDAG-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ-PLQLGAD  201 (397)
T ss_dssp             CEEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-GGGGTCS
T ss_pred             eEeeccCCC-----CHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCc-chhcCCC
Confidence            999999865     7999999999999999999999999999999999999999999999999987655432 2344899


Q ss_pred             EEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK  267 (397)
Q Consensus       191 ~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~  267 (397)
                      +++.|.+|..++.+   .|+++++++...+.+-...     .....+.++....+.+...++    .+.-+.++..+++.
T Consensus       202 ivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~-----~~~~G~~l~p~~a~l~~rgl~----TL~lRm~~~~~nA~  272 (397)
T d1y4ia1         202 IVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGL-----KDITGGCMSPFNAWLTLRGVK----TLGIRMERHCENAL  272 (397)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHH-----HHTTCCCCCHHHHHHHHHHHT----THHHHHHHHHHHHH
T ss_pred             EEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHH-----HhCcCCcCCHHHHHHHHcCcC----cHHHHHHHHHHHHH
Confidence            99999999444333   5888887654433211000     001123444444443333333    34557788889999


Q ss_pred             HHHHHHhhhcCcEEEeCCCCC--------------CCCceEEEEecCCC--hHHHHHHhC--CcEecccCccC----CCC
Q psy8850         268 RLYNGLMESIEEIYINGDMNN--------------RIPHNLNISFNFIE--GESLLMAIK--DIAVSSGSACT----SAS  325 (397)
Q Consensus       268 ~l~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~l~--~i~~~~g~~~~----~~~  325 (397)
                      .+.+.|++ .|.+..+.-|+.              ..++++.|.+.+..  ..++.+.|+  .....-|...+    |..
T Consensus       273 ~lA~~L~~-hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~  351 (397)
T d1y4ia1         273 KIARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPAS  351 (397)
T ss_dssp             HHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCSCSSCEEECTTT
T ss_pred             HHHHHHHh-CCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCccceeeccCcccceeeCccc
Confidence            99999998 887754433221              24677888876421  245666665  34444444332    222


Q ss_pred             CC----hhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         326 LE----PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       326 ~~----~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      +.    +.......|+.+    +.||||++.    |++|.+++.|++++++.
T Consensus       352 ~th~~~~~e~r~~~Gi~~----~liRlsvGl----Ed~~DLi~Dl~~AL~~a  395 (397)
T d1y4ia1         352 MTHSPVAPEERLKAGITD----GLIRLSVGL----EDPEDIINDLEHAIRKA  395 (397)
T ss_dssp             TTTSSSCHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHcCCCc----CEEEEEecc----CCHHHHHHHHHHHHHHh
Confidence            21    223455677765    899999997    66667777777776653

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.94  E-value=1.1e-25  Score=206.86  Aligned_cols=336  Identities=12%  Similarity=0.069  Sum_probs=220.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcc---hhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHH-HHHHHHH
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHI---YGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATES-NNLAIKG   77 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a-~~~~l~~   77 (397)
                      .+++++.|++|+++|.+.+..+...+.+ .+.   .+..+.+.++++++.|+++++++.+ .+++++|++.+ +++++..
T Consensus         8 ~pGP~~vp~~V~eam~~~~~~~~~~~~~-~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~   86 (361)
T d2c0ra1           8 NAGPAALPLEVLERAQAEFVDYQHTGMS-IMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMN   86 (361)
T ss_dssp             CSSSCCCCHHHHHHHHHTSSSSTTSSSC-GGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHHHhhhcccCcc-ccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc
Confidence            4667778999999999988764322222 211   2567789999999999999999755 57887777655 4555555


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHH
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL  156 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~  156 (397)
                      +.    .+++++++..  +..+...+..+ ...|..++.++.+....++++++++.+...+.    .+.+|.||.+.|++
T Consensus        87 l~----~~~~~~l~~~--~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~tg~~~~~~  156 (361)
T d2c0ra1          87 FL----KEGQTANYVM--TGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDNA----AYLHLTSNETIEGA  156 (361)
T ss_dssp             HC----CTTCEEEEEE--CSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTTE----EEEEEESEETTTTE
T ss_pred             cc----cCCCceEEEe--echhhhhhhhhhhhcCceeeeeccccccccchhhhhhhcccCcc----eEEEEecccceecc
Confidence            55    6777776654  34444444443 33488999998887777888888887766542    33456689999999


Q ss_pred             HHHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCC-c----cccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-H----EYGL  231 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~-~----~~~~  231 (397)
                      ++.++|+++|+++++|+++++|..+++...+  |+.++|.+|.++++|.+++++..+............. .    ....
T Consensus       157 ~i~~~~~~~~al~~vDavss~g~~~id~~~~--di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (361)
T d2c0ra1         157 QFKAFPDTGSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNS  234 (361)
T ss_dssp             ECSSCCCCTTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTT
T ss_pred             eEEEeeccCCceEEEEeeccccccccccccc--eeEEEecccccccccCcEEEEEhHHhhhCcccccccccccccccccc
Confidence            9999999999999999999999999999865  5556677895555554555554433332221111110 0    0111


Q ss_pred             cCCCCchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHH
Q psy8850         232 RSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLM  308 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  308 (397)
                      ...+++......+..+....  ..+.....++.+..+..+................+..+....+.+.+++ .+..++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~  314 (361)
T d2c0ra1         235 LYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVK  314 (361)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHH
T ss_pred             ccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcccHHHHHH
Confidence            12233333333332333322  2245556666667777777766662333344444444446667777754 34567777


Q ss_pred             HhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         309 AIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       309 ~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .|.  ||.+..|..+.                     +.+||++..+++.|||++++++|+++.++
T Consensus       315 ~L~~~GI~~~~G~~~~---------------------g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         315 ASEQEGFVGLKGHRSV---------------------GGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             HHHHTTEESCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEecCCCcC---------------------CeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            776  88888774221                     34899999999999999999999987664

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.94  E-value=1.6e-25  Score=210.69  Aligned_cols=300  Identities=15%  Similarity=0.109  Sum_probs=206.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEecc--
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--  118 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~--  118 (397)
                      ....++..++++++|.+........|+++++.+++.+....  .++++|+++...|+++..++..+   |.+++.++.  
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~--~~~~~vi~s~~~H~s~~k~~~~~---g~~~~~v~~~~  187 (434)
T d2z67a1         113 ALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK--YGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVL  187 (434)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHH--HCCCEEEEECCCCHHHHHHHHHT---TCEEEEECCEE
T ss_pred             HHHHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHh--hcCceEEEeccCCHHHHHHHHHh---CCcceEEEeec
Confidence            34455667788899987654555556666666777765422  46799999999999999998877   888777764  


Q ss_pred             -CCCCCCCHHHHHHHhcC-----CceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCcc-----ccccCcc
Q psy8850         119 -KNNGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNY  187 (397)
Q Consensus       119 -~~~~~~d~~~l~~~i~~-----~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~-----~~~~~~~  187 (397)
                       ++++.+|+++|++++.+     ++.+|+++++++++|.+.|+++|+++|++||+++|+|++|+.+..     +......
T Consensus       188 ~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~  267 (434)
T d2z67a1         188 DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY  267 (434)
T ss_dssp             ETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS
T ss_pred             CCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccC
Confidence             45678999999999974     678899999999999999999999999999999999999985542     2223345


Q ss_pred             cccEEEecccc-ccCCCCceEEEEecCC-CCccccccccCCccccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy8850         188 KVDLMSFSAHK-IYGPKGIGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILF  264 (397)
Q Consensus       188 ~~d~~~~s~~K-~~g~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~  264 (397)
                      ++|++++|+|| +.+|.|.|+++.+++. ..++....          .++.+......+.+++..+ .+++..+.++..+
T Consensus       268 ~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~  337 (434)
T d2z67a1         268 RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY----------PGRASATPVVNTLVSLLSMGSKNYLELVKNQKN  337 (434)
T ss_dssp             CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS----------CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEEcCccccccCCCccccccCcHHHHHHHHhhc----------ccccccchHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            89999999999 7788888888887532 12222221          1122223333333444433 4567888888888


Q ss_pred             HHHHHHHHHhhhc---CcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCc
Q psy8850         265 LQKRLYNGLMESI---EEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCND  339 (397)
Q Consensus       265 ~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~  339 (397)
                      +++++++.|++ +   .+..+...+.   ...+.+.+. .+..++...|.  ||......  .+.      .-.......
T Consensus       338 ~a~~l~~~L~~-l~~~~g~~ll~~~~---~~~~~~~~~-~~~~~l~~~L~~~gI~g~~v~--~~l------~~~g~~~~~  404 (434)
T d2z67a1         338 SKKLLDELLND-LSKKTGGKFLDVES---PIASCISVN-SDPVEIAAKLYNLRVTGPRGI--KKT------DHFGNCYLG  404 (434)
T ss_dssp             HHHHHHHHHHH-HHHHSSCCBCCCCC---SSEEEEECS-SCHHHHHHHHHHTTEESCEEE--CTT------CHHHHTCSS
T ss_pred             HHHHHHHHHHH-hhhhcCceecCCCC---CceeeeecC-CCHHHHHHHHHHcCCeeeehh--hhc------cccCeeeec
Confidence            88998888876 4   3444444322   344444543 56777777776  55322111  110      001111122


Q ss_pred             cccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         340 ELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       340 ~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      ...++++|++++..+|++|||+++++|++
T Consensus       405 ~~~~~~l~~~~s~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         405 TYTHDYIVMNAAIGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             CCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             ccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence            33458899999999999999999999986

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.7e-25  Score=203.89  Aligned_cols=339  Identities=11%  Similarity=-0.061  Sum_probs=230.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCC---cchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHHh
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRN---HIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGA   78 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~l   78 (397)
                      ++++...|++|+++|.+.+..+...+.+ .   +..+..+.+.++++++.|+++++++.+ .|++++|++++.+.++...
T Consensus         6 ~pGP~~~p~~Vl~a~~~~~~~~~~~~~~-~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~   84 (360)
T d1bjna_           6 SSGPAMLPAEVLKQAQQELRDWNGLGTS-VMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLN   84 (360)
T ss_dssp             CSSSCCCCHHHHHHHHHTSSSGGGSSSC-GGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHHHhhhcccCcc-ccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhc
Confidence            5677778999999999988764432221 1   123567778999999999999999755 5888888877765554433


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                      ..   .+++.+++....  .+...+.. ....|..+.....+.+...+.+.+++.+..+++++++.+.+|.||...+++.
T Consensus        85 ~~---~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~  159 (360)
T d1bjna_          85 IL---GDKTTADYVDAG--YWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDE  159 (360)
T ss_dssp             HC---TTCCEEEEEESS--HHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCC
T ss_pred             cc---ccccccceeccc--chhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhccCCceeEEEecccccccCccccc
Confidence            32   566677665443  33333343 3444777777766666666778888888889999999999999999988876


Q ss_pred             HHHHHHhcCcEEEEecccccCccccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCc-----cccc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-----EYGL  231 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~-----~~~~  231 (397)
                      +  .++.+++.+++|++++.+..+++..  +.|++++|.|| +++|+|.++++.++............+..     ....
T Consensus       160 i--~~~~~~~~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (360)
T d1bjna_         160 T--PDFGADVVVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSM  235 (360)
T ss_dssp             C--CCCCTTCCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTC
T ss_pred             e--ecccccceeeeeeeccccceeeeec--cceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhhHHHHhhhhh
Confidence            6  3677899999999999998887766  67899999999 66677777777776654443222111110     0111


Q ss_pred             cCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHH
Q psy8850         232 RSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMA  309 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  309 (397)
                      ...++......+....+..... +.....++..+....+.+.+.. .........+..+....+.|.+++ .+..++...
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~  314 (360)
T d1bjna_         236 FNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDN-SDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEE  314 (360)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhc-cccccccCCcccccceEEEEEcCCcccHHHHHHH
Confidence            1222333333333333333332 4556666677777777777766 555555555555556778888864 456677777


Q ss_pred             hC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         310 IK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       310 l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      |.  ||.+..|..+.                     +.||||+..++|.|||++++++|+++.+++
T Consensus       315 l~~~Gi~~~~G~~~~---------------------g~~Ris~~~~~t~edV~~li~~l~e~~~~~  359 (360)
T d1bjna_         315 SFAAGLHALKGHRVV---------------------GGMRASIYNAMPLEGVKALTDFMVEFERRH  359 (360)
T ss_dssp             HHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCEeecCCCcc---------------------CeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence            76  88887763211                     348999999999999999999999977653

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=6.8e-24  Score=195.82  Aligned_cols=334  Identities=16%  Similarity=0.082  Sum_probs=222.0

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      .+++-++++.+.+.+-       .+..|    +...++++.+++++|.+  ..++++|||.|+.+++.++..   ++||+
T Consensus        10 ~~~~~~~~~~~~~~~~-------~~~~G----~~v~~~E~~la~~~g~~--~ai~~~sgt~Al~~al~al~~---~~gde   73 (376)
T d1mdoa_          10 MGAEELAAVKTVLDSG-------WITTG----PKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGI---GEGDE   73 (376)
T ss_dssp             CCHHHHHHHHHHHHHT-------CCSSS----HHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC---CTTCE
T ss_pred             CCHHHHHHHHHHHhcC-------CCcCC----HHHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHhCC---CCCCE
Confidence            4567778888888761       12222    35678999999999986  788999999999999998732   79999


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCc
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV  167 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi  167 (397)
                      |++++.+|+++..++...   |.+++.++++. ++.+|+++|+++++++|++|+++|.   .|...|+++|.++|++||+
T Consensus        74 Vi~~~~~~~~~~~ai~~~---g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~---~G~~~~~~~i~~i~~~~~i  147 (376)
T d1mdoa_          74 VITPSMTWVSTLNMIVLL---GANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHY---AGAPADLDAIYALGERYGI  147 (376)
T ss_dssp             EEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHHTC
T ss_pred             EEEecccccccccchhcc---ccceeeecccccccCCCHHHHHHhcCCCCeEEEEeCC---CCCccchhHHHHHHHhcCc
Confidence            999999999999999888   99999999985 6789999999999999999998765   7999999999999999999


Q ss_pred             EEEEecccccCccccc--cCcccccEEEeccccccCCCCceEEEEecCCCC-ccccccccCCcc-------------ccc
Q psy8850         168 IFHCDAAQAVGKIDIN--IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRT-RIEAQIHGGGHE-------------YGL  231 (397)
Q Consensus       168 ~livD~a~~~~~~~~~--~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~-~~~~~~~~~~~~-------------~~~  231 (397)
                      +||+|++|+.|...-+  ....+..+++++.+|.++..+.|+++.+++... .++.....+...             ..+
T Consensus       148 ~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  227 (376)
T d1mdoa_         148 PVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEV  227 (376)
T ss_dssp             CBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEE
T ss_pred             eEEeccchhccCeeCCeecccccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCcccccccccccccccccc
Confidence            9999999998875322  222344455556678434334488887765332 222111111000             000


Q ss_pred             cCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCC--CCCceEEEEec----CCChH
Q psy8850         232 RSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN----FIEGE  304 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~  304 (397)
                      .....|.. +-.+.+++... ...++++.++.+++++++.+.|.+ ++...+......  .....+.+.++    ..+..
T Consensus       228 ~~~g~n~~-~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd  305 (376)
T d1mdoa_         228 LAPGYKYN-LPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMAD-LPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRD  305 (376)
T ss_dssp             SSCCCBCC-CCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-SSCEECCCCSSCEECCCSCEEEECCHHHHSSCHH
T ss_pred             hhcccccc-cchhhhhhhhhhhhhhhHHHHHHhhhhhhhhhhccc-ccccccccccccccccccccccccccccchhhHH
Confidence            00011110 00111111111 224567788889999999999998 776654433221  11223333332    23446


Q ss_pred             HHHHHhC--CcEecccCccCCCCCChhhHHHhhCCC------ccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         305 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCN------DELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       305 ~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~------~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ++.+.|.  ||.++..  +.+...  ...++.....      .....+.|.+.+....+.+||+++++.|++++
T Consensus       306 ~l~~~L~~~gI~~~~~--y~~~~~--~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         306 ALMASLKTKGIGTGLH--FRAAHT--QKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             HHHHHHHHTTBCCBCC--CCCGGG--SHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCeeeE--Ccchhc--CHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            7888887  7766543  322111  1222222111      12245779998888899999999999999875

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.93  E-value=5e-25  Score=202.28  Aligned_cols=340  Identities=11%  Similarity=-0.006  Sum_probs=215.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhccCCCCC---CCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChhHHHHHHHHH
Q psy8850           2 DYSATTPIDPRVVDKMIPYLRVQFGNPAS---RNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKG   77 (397)
Q Consensus         2 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~~g~t~a~~~~l~~   77 (397)
                      +++++++.|++|+++|.+.+..+...+.+   ..|+ +..+.+.++++|+.++++++++.+ .|++++|+++++..+...
T Consensus         7 F~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHR-s~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~   85 (360)
T d1w23a_           7 FNAGPSALPKPALERAQKELLNFNDTQMSVMELSHR-SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPM   85 (360)
T ss_dssp             CCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred             eCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcC-CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHh
Confidence            46788889999999999987653322111   0232 556778999999999999999866 478888887776655554


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHH
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                      ...   ++++++++....+.+. ..+..+...+..+............+++++......    .+++..|.||.+.|+++
T Consensus        86 ~~~---~~~~~v~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~tg~~~~~~~  157 (360)
T d1w23a_          86 NLL---TKGTIGNYVLTGSWSE-KALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNE----NDAYLHITSNNTIYGTQ  157 (360)
T ss_dssp             HHC---CTTCEEEEEECSHHHH-HHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCT----TEEEEEEESEETTTTEE
T ss_pred             hhc---ccCcccceeeccchhh-hhHHHHHHhhhcceeeccccccccchhhhhhccccc----ccceeEecCCcccccee
Confidence            442   5677777765544433 344445555666665554433333445554443332    23455667999999999


Q ss_pred             HHHHHHhcCcEEEEecccccCccccccCcccccEEEeccccccCCCCceEEEEecCCCCccccccccCCc----cccccC
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----EYGLRS  233 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~  233 (397)
                      |.++|+++|+++++|+++++|..++|+..+++|+.+++.+|++++ |.|+++.++...+........+..    ......
T Consensus       158 i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (360)
T d1w23a_         158 YQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSG-VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLY  236 (360)
T ss_dssp             CSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTT-CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCS
T ss_pred             eeeccccceeeEEeeccccccccccccccccceEEeeccccccCC-cceeeEechhhhcccccCCcchhhhhhhhhhhhc
Confidence            999999999999999999999999999988888887776665444 456666665433332221111100    011122


Q ss_pred             CCCchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CChHHHHHHh
Q psy8850         234 GTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI  310 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  310 (397)
                      .++...........+....+  +.....++........................+..+.++.+.|.+++ ....++...|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l  316 (360)
T d1w23a_         237 NTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKA  316 (360)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHH
T ss_pred             ccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCccHHHHHHHH
Confidence            33444444444334443333  23334444444444444444441223334444455556677777764 3345677666


Q ss_pred             C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         311 K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       311 ~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .  |+.+..|..+.                     +.+|+|+..++|.|||+++++.|+++.+.
T Consensus       317 ~~~GI~~~~G~~~~---------------------ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         317 KEQGFVGLNGHRSV---------------------GGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             HHTTEESCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCeeeeCCCcc---------------------CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence            5  88887775332                     34899999889999999999999988653

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.93  E-value=2.2e-25  Score=207.56  Aligned_cols=319  Identities=10%  Similarity=0.031  Sum_probs=203.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCcEEEeCChh-----HHH
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIWTSGAT-----ESN   71 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~i~~~~g~t-----~a~   71 (397)
                      ..+..+..+.|+++..+....-.      .+  +|....+..++|+++++++.-      +++.|+.+.+..     .++
T Consensus        41 ~~~~~~~~~~V~~a~~~~~~~~~------~~--~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~  112 (401)
T d7aata_          41 DNGKPYVLNCVRKAEAMIAAKKM------DK--EYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVG  112 (401)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHTTC------CC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHhhCCC------CC--CCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHH
Confidence            34445666888888877775411      11  233344677888888877632      345566554332     345


Q ss_pred             HHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhc---CCceEEEEeccc
Q psy8850          72 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVN  146 (397)
Q Consensus        72 ~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~  146 (397)
                      ..+++++.    ++||+|++++|.|+.+...+...   |.+++.+|+.  .++..+.+.+.+.+.   +++++++++++|
T Consensus       113 ~~~~~~l~----~pGd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~  185 (401)
T d7aata_         113 ANFLQRFF----KFSRDVYLPKPSWGNHTPIFRDA---GLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAH  185 (401)
T ss_dssp             HHHHHHHC----TTCCEEEEEESCCTTHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSC
T ss_pred             HHhhHhhc----CCCceEEEecCCCcchhhHHHHc---CCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCC
Confidence            55555555    89999999999999999888887   9999999984  455678888887764   578999999999


Q ss_pred             Cccccccc---HHHHHHHHHhcCcEEEEecccccCccc---cc------c-CcccccEEEeccccccCCCC--ceEEEEe
Q psy8850         147 NEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID---IN------I-QNYKVDLMSFSAHKIYGPKG--IGALYIR  211 (397)
Q Consensus       147 ~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~---~~------~-~~~~~d~~~~s~~K~~g~~g--~g~~~~~  211 (397)
                      ||||.+++   +++|+++|++|+++||.|++|......   ..      . ......+++.|++|.++..|  +|++++.
T Consensus       186 NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~  265 (401)
T d7aata_         186 NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVI  265 (401)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEE
T ss_pred             CCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecc
Confidence            99999998   578999999999999999999733211   00      0 11123466778889544334  7999998


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--EEEe
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE--IYIN  283 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~  283 (397)
                      ....+.............+......+..........++      .+...++.+++++..+++.+.+.|++..+.  +.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~  345 (401)
T d7aata_         266 CRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHI  345 (401)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            76554432211100000000011222222222222222      223456778888999999999999982222  2222


Q ss_pred             CCCCCCCCceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHH
Q psy8850         284 GDMNNRIPHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID  360 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~  360 (397)
                      .+.+   +.++++   +.+ .++.+.|.   +|.+.+|                           +||++.. .++++|+
T Consensus       346 ~~~~---G~F~~~---~ls-~e~~~~L~~e~gV~~~pg---------------------------~Ris~a~-~~~~~i~  390 (401)
T d7aata_         346 TDQI---GMFCFT---GLK-PEQVERLTKEFSIYMTKD---------------------------GRISVAG-VASSNVG  390 (401)
T ss_dssp             HHCC---SSEEEC---CCC-HHHHHHHHHHHCEECCTT---------------------------CEEEGGG-CCTTTHH
T ss_pred             CCCC---eEEEec---CCC-HHHHHHHHHhCCEEECCC---------------------------cEEEecc-CCHHHHH
Confidence            2222   222222   233 34555553   7887765                           3999875 5788899


Q ss_pred             HHHHHHHHHHH
Q psy8850         361 FTIKLLKMKVK  371 (397)
Q Consensus       361 ~~~~~l~~~~~  371 (397)
                      +++++|.++++
T Consensus       391 ~la~ai~~v~k  401 (401)
T d7aata_         391 YLAHAIHQVTK  401 (401)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998763

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.93  E-value=4.5e-24  Score=202.31  Aligned_cols=327  Identities=13%  Similarity=0.028  Sum_probs=208.0

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCCh-hHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC
Q psy8850          42 AIEKARNEVAQLIYADPREIIWTSGA-TESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN  120 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~~~~i~~~~g~-t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~  120 (397)
                      .+.++++.+|+++|++  ..+|+.|| |.++.+++.+++    ++||+|+++..+|.|...++..+...+..+...+.++
T Consensus        67 ~i~eae~~~A~~~ga~--~a~f~~~Gtt~~n~a~i~a~~----~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~  140 (462)
T d1c4ka2          67 PAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNP  140 (462)
T ss_dssp             HHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECT
T ss_pred             HHHHHHHHHHHHhCCC--eEEEECCchHHHHHHHHHHhc----CCCCeEEecccchHHHHHHHHHHhcCCceeeeccccc
Confidence            5788999999999986  56665555 555666677777    8999999999999999887776654445555555555


Q ss_pred             CCC--------CCHHH---------HHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccc
Q psy8850         121 NGL--------ITLSQ---------LEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN  183 (397)
Q Consensus       121 ~~~--------~d~~~---------l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~  183 (397)
                      .+.        ++.+.         +++++..++..+++.+..|..|.+.|+++|+++|++||++|++|++|+.+....+
T Consensus       141 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~  220 (462)
T d1c4ka2         141 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIP  220 (462)
T ss_dssp             TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSG
T ss_pred             ccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccC
Confidence            441        23322         3444455677777777888899999999999999999999999999986654322


Q ss_pred             c-------------CcccccEEEeccccccC-CCCceEEEEecCCCCcccccccc---CCccccccCCCCchhHHHHHHH
Q psy8850         184 I-------------QNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHG---GGHEYGLRSGTLATHQIVGMGE  246 (397)
Q Consensus       184 ~-------------~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~  246 (397)
                      .             ...++|++++|+||.+| +.|.+++..++............   ......+..++++...+.++.+
T Consensus       221 ~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~  300 (462)
T d1c4ka2         221 MMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDV  300 (462)
T ss_dssp             GGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             cCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHH
Confidence            1             11246999999999555 54545555554333221111000   0001224567788888888888


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCC----------------------CceEEEEecCCCh
Q psy8850         247 AFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI----------------------PHNLNISFNFIEG  303 (397)
Q Consensus       247 al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~  303 (397)
                      +..++.. ...++.++..++.+++++++.+ +.+...........                      +...+..+.....
T Consensus       301 a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (462)
T d1c4ka2         301 NAAMQEGEAGRKLWHDLLITTIEARKKLIK-AGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGD  379 (462)
T ss_dssp             HHHHHSHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccCc
Confidence            8887743 4677788888899999999988 65433222111000                      0000000110000


Q ss_pred             HH-------HHHHhCCcEecccCccCCCC--CChhhHHHhhCCCccc-cCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         304 ES-------LLMAIKDIAVSSGSACTSAS--LEPSYVLRALGCNDEL-AHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       304 ~~-------~~~~l~~i~~~~g~~~~~~~--~~~~~~~~~~g~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..       +.....++....|..+..+.  ...+..++..|+.... ..+.||++++..+|++++|+++++|.++.+.+
T Consensus       380 ~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~  459 (462)
T d1c4ka2         380 NQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLI  459 (462)
T ss_dssp             TCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            00       00000133333343333221  1123556777876544 35789999999999999999999999998877


Q ss_pred             Hh
Q psy8850         374 RE  375 (397)
Q Consensus       374 ~~  375 (397)
                      .+
T Consensus       460 ~~  461 (462)
T d1c4ka2         460 EE  461 (462)
T ss_dssp             HT
T ss_pred             hc
Confidence            65

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.5e-23  Score=188.13  Aligned_cols=312  Identities=14%  Similarity=0.097  Sum_probs=220.7

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhC-C
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-G  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-g  110 (397)
                      .|.+++...+....+++.|+++-|.+  ..++++||..|+..++.++.    ++|++|++++..|..+...+...... |
T Consensus        41 ~~~Y~R~~nPt~~~le~~la~LEgg~--~a~~~sSGMaAi~~~l~~l~----~~gd~vv~~~~~yg~t~~~~~~~~~~~g  114 (384)
T d1cs1a_          41 AHDYSRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGC  114 (384)
T ss_dssp             SCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred             CCcccCCCCHHHHHHHHHHHHHhCCC--ceEEecChHHHHHHHHhhcc----cccceecccccccchhhhhhhhhhcccc
Confidence            45566777788999999999999976  68888999999999999888    89999999999999998888776554 7


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      ..+..++..     |.+.+++++.++|++|+++.|.||+..+.|++.|+++||++|++++||++.+.+... +...+++|
T Consensus       115 ~~~~~~d~~-----d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~-~Pl~~GaD  188 (384)
T d1cs1a_         115 YRVLFVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ-NPLALGAD  188 (384)
T ss_dssp             CEEEEECTT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CGGGGTCS
T ss_pred             cccccccCC-----CHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccc-cccccCCC
Confidence            788877654     789999999999999999999999999999999999999999999999998755432 22344899


Q ss_pred             EEEeccccccCCCC---ceEEEEecCCC-CccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKIYGPKG---IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K~~g~~g---~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      +++.|.+|++++.+   .|+++.+++.. ..+.....       ...+..+....+.+...++    .+.-+.++..+++
T Consensus       189 iVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~-------~~G~~~~p~~a~ll~rgL~----TL~lRm~~~~~nA  257 (384)
T d1cs1a_         189 LVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN-------NIGVTGGAFDSYLLLRGLR----TLVPRMELAQRNA  257 (384)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH-------HHTCBCCHHHHHHHHHHHT----THHHHHHHHHHHH
T ss_pred             EEEEccccccccCCCcccccccCCchhhhhhhhhhhh-------hhhhccccccHHHHhhccc----hhHHHHHHHHHHH
Confidence            99999999544333   57777654321 12211111       1112333333333323333    3556778889999


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCC--hHHHHHHhC--CcEecccCccCC----C
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIE--GESLLMAIK--DIAVSSGSACTS----A  324 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~l~--~i~~~~g~~~~~----~  324 (397)
                      ..+.+.|++ .|.+..+.-|+              ...+.++.|.+.+..  ...+.+.|+  .....-|...+.    .
T Consensus       258 ~~lA~~L~~-hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~  336 (384)
T d1cs1a_         258 QAIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAA  336 (384)
T ss_dssp             HHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGG
T ss_pred             HHHHHhccc-CCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcceeccccCCccceecccc
Confidence            999999998 78775443322              123567777775421  245556665  333444433221    1


Q ss_pred             CC----ChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         325 SL----EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       325 ~~----~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      ++    .+.......|+.+    +.||+|++.    |++|.+++.|+++++.+.|
T Consensus       337 ~~th~~~~~e~r~~~Gi~~----~lvRlSvGl----Ed~eDLi~Dl~~AL~aa~~  383 (384)
T d1cs1a_         337 TMTHAGMAPEARAAAGISE----TLLRISTGI----EDGEDLIADLENGFRAANK  383 (384)
T ss_dssp             GTTTTTSCHHHHHHHTCCT----TEEEEECCS----SCHHHHHHHHHHHHHHHTC
T ss_pred             ccccccCCHHHHHhcCCCc----CeEEEEecc----CCHHHHHHHHHHHHHHhcC
Confidence            11    1223445677765    899999997    7778888888888776643

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.92  E-value=3.9e-23  Score=187.57  Aligned_cols=309  Identities=15%  Similarity=0.107  Sum_probs=216.4

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g  110 (397)
                      .+.+++...+....+++.|+++-|.+  ..++++||..|+..++.++.    ++||+|+++...|..+...+..... .|
T Consensus        58 ~~~Y~R~~nPt~~~LE~~la~LEgg~--~a~~~sSGMaAi~~~l~~l~----~~Gd~iv~~~~~Yg~t~~l~~~~~~~~g  131 (398)
T d1qgna_          58 SFEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMG  131 (398)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred             CceecCCCChHHHHHHHHHHHHhCCc--eEEEecCcchHHHHHHhhcc----cccccccccccccchhhhhhcccccccc
Confidence            56677777889999999999999976  68888999999999999888    8999999999999999988877544 48


Q ss_pred             cEEEEeccCCCCCCCHHHH-HHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccc
Q psy8850         111 FRVTYLKPKNNGLITLSQL-EEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV  189 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l-~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~  189 (397)
                      ++++.++..     +.++. ++.+.+++++|+++.|.||+..+.|++.|+++||++|++++||++.+.+... +...+++
T Consensus       132 i~~~~~~~~-----~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~-~Pl~~Ga  205 (398)
T d1qgna_         132 ITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGA  205 (398)
T ss_dssp             CEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTC
T ss_pred             ccccccccc-----chhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccC-CchhhCC
Confidence            998888743     44444 4566789999999999999999999999999999999999999998755432 2334589


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       190 d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      |+++.|.+|++++.+   .|++..+++....+.....       ...+..+....+.+...++    .+.-+.++..+++
T Consensus       206 DiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~-------~~G~~l~p~~a~ll~rgl~----TL~lRm~~~~~nA  274 (398)
T d1qgna_         206 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHH-------ILGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA  274 (398)
T ss_dssp             SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHGG----GHHHHHHHHHHHH
T ss_pred             CEEEEechhhcCcccceeehhhcchhhhhhhhhhhcc-------cCCCcCCHHHHHHHHhcch----HHHHHHHHHHHHH
Confidence            999999999544333   4666666544433332211       1112344333333333333    3556788888999


Q ss_pred             HHHHHHHhhhcCcEEEeCCCCC--------------CCCceEEEEecCC--ChHHHHHHhC--CcEecccCccCCCC---
Q psy8850         267 KRLYNGLMESIEEIYINGDMNN--------------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTSAS---  325 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~~~---  325 (397)
                      ..+.+.|++ .|.+.-+.-|+.              ..+.++.|.+.+.  ...++.+.|+  .....-|...+...   
T Consensus       275 ~~lA~~L~~-hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~  353 (398)
T d1qgna_         275 LRMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPA  353 (398)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHH
T ss_pred             HHHHHHHHh-CCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCCCcceeeCcc
Confidence            999999998 788764433221              2356777776532  1245666666  33444444333210   


Q ss_pred             -----CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         326 -----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       326 -----~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                           .-+.......|+.+    +.||||++.    |++|.+++.|+++++.
T Consensus       354 ~~th~~~~~~~~~~~Gi~~----~liRlSvGl----Ed~eDLi~Dl~~AL~~  397 (398)
T d1qgna_         354 IMSYWDLSQSDRAKYGIMD----NLVRFSFGV----EDFDDLKADILQALDS  397 (398)
T ss_dssp             HHHSTTSCHHHHHTTTCCS----SEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             hhccccCCHHHHHhcCCCc----CEEEEEecc----CCHHHHHHHHHHHHhc
Confidence                 01123345556665    899999997    6677777777777764

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=7.2e-24  Score=191.72  Aligned_cols=307  Identities=16%  Similarity=0.139  Sum_probs=209.4

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g  110 (397)
                      .|.+++...+....+++.|+.+-+.+  ..++++||..|+.+ +.+++    ++||+|+++...|..+...+... .+.|
T Consensus        40 ~~~Y~R~~nPt~~~le~~la~LE~~~--~a~~fsSGMaAisa-ll~ll----~~Gd~vv~~~~~Yg~t~~l~~~~~~~~g  112 (380)
T d1ibja_          40 PYDYTRSGNPTRDALESLLAKLDKAD--RAFCFTSGMAALSA-VTHLI----KNGEEIVAGDDVYGGSDRLLSQVVPRSG  112 (380)
T ss_dssp             SCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTTS----CTTCEEEEESSCCHHHHHHHHHTSGGGT
T ss_pred             CceeeCCCChHHHHHHHHHHHHcCCc--eEEehhhHHHHHHH-HHHhh----CCCCEEEEEecccccccchhhhhhcccc
Confidence            45566667788899999999999976  57778888888864 45566    79999999999999999888775 3459


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      +++..++.+     +.+++++++.++|++|+++.|.||+..+.|++.|+++||++|+++|||++.+.+... +...+++|
T Consensus       113 i~~~~~d~~-----~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~-~Pl~~GaD  186 (380)
T d1ibja_         113 VVVKRVNTT-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS-RPLELGAD  186 (380)
T ss_dssp             CEEEEECTT-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC-CGGGTTCS
T ss_pred             ccccccCcc-----hHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccccc-cccccCCC
Confidence            999988765     789999999999999999999999999999999999999999999999998755432 22234899


Q ss_pred             EEEeccccccCCCC---ceEEEEecCC-CCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         191 LMSFSAHKIYGPKG---IGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       191 ~~~~s~~K~~g~~g---~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      +++.|.+|++++.+   .|+++.+++. ...+.....       ...+.++....+.+...++    .+..+.++..+++
T Consensus       187 iVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~-------~~G~~l~p~~a~ll~rgl~----Tl~lRm~~~~~nA  255 (380)
T d1ibja_         187 IVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN-------SEGSGLAPFDCWLCLRGIK----TMALRIEKQQENA  255 (380)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHH-------HTTCBCCHHHHHHHHHHHT----THHHHHHHHHHHH
T ss_pred             EEEecccceeccccCccccccccchhhHHHHHHhhcc-------ccCCcCCHHHHHHHHhcch----hhhhhHHHHHHHH
Confidence            99999999544333   5777777432 122221111       1122344444444434443    3556778888889


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccC----CCC
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACT----SAS  325 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~----~~~  325 (397)
                      ..+.+.|++ .|.+..+.-|+              ...+.++.+.+.+.+ ...+.+.|+  .+...-|...+    |..
T Consensus       256 ~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~SlG~~~SLi~~p~~  334 (380)
T d1ibja_         256 RKIAMYLSS-HPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCF  334 (380)
T ss_dssp             HHHHHHHHT-CTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTT
T ss_pred             HHHHHHHHh-CCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhCCcCeEeeccCCccccccCchh
Confidence            999999988 66654332211              123455555544322 345556665  33334443322    211


Q ss_pred             CChh----hHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         326 LEPS----YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       326 ~~~~----~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                      +.+.    ...+..|+.    ++.||||++.    |+.|.+++.|+++++
T Consensus       335 ~th~~~~~e~r~~~Gi~----~~lvRlSvGl----E~~eDLi~Dl~qAl~  376 (380)
T d1ibja_         335 MSHASIPAEVREARGLT----EDLVRISAGI----EDVDDLISDLDIAFK  376 (380)
T ss_dssp             TTTCSCCSSSSSSSSCC----TTCEEEECCS----SCHHHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHcCCC----cCeEEEEecc----CCHHHHHHHHHHHHH
Confidence            1111    112233444    4899999997    666777777777765

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=4.3e-24  Score=190.79  Aligned_cols=334  Identities=18%  Similarity=0.219  Sum_probs=241.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHH-HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAE-KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      +|...+++.|++++...+...+  ++|.. .|..|-... ++...+.+..+++|++...++. ..||+.|+..+..+++ 
T Consensus        30 aSEN~~S~~v~~a~~S~l~nkyaeG~pg~-ryy~G~~~id~iE~la~~ra~~lF~a~~anVq-p~SGs~An~av~~all-  106 (405)
T d1kl1a_          30 ASENFVSRAVMEAQGSVLTNKYAEGYPGR-RYYGGCEYVDIVEELARERAKQLFGAEHANVQ-PHSGAQANMAVYFTVL-  106 (405)
T ss_dssp             TTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHCCSEEECC-CSSHHHHHHHHHHHHC-
T ss_pred             ccCCcCCHHHHHHhcCcccCcCcCCCCCc-cccCCchhHHHHHHHHHHHHHHHhCCCcceee-ccCchHHHHHHHHHhc-
Confidence            5666789999999999887655  46665 344344344 4444578899999998743343 3578889999999998 


Q ss_pred             hhccCCCEEEEcCCCChhhHHH---HHHHhhCCcEEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCcccccccH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDS---IRKLENDGFRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPI  155 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~---~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l  155 (397)
                         +|||+|+..+..++++...   ...... ..++..++++ +++.+|.+++++++.+ +|++|++..-.+|  ...|+
T Consensus       107 ---~pGD~im~l~l~~GGHlshg~~~~~~g~-~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--r~~d~  180 (405)
T d1kl1a_         107 ---EHGDTVLGMNLSHGGHLTHGSPVNFSGV-QYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYP--RIIDF  180 (405)
T ss_dssp             ---CTTCEEEEECGGGTCCGGGTCTTSHHHH-HSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCH
T ss_pred             ---CCCCEEEEeecccccccccCccccccce-EEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccccc--cccCh
Confidence               8999999888665554432   221111 4688888888 5678999999998865 8999988765544  56789


Q ss_pred             HHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCcccc
Q psy8850         156 LEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       156 ~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +++.++|++.|+++++|.+|-.|.+    ..+... ++|++++|.|| +.||.| |+++.+++..+++....+.+     
T Consensus       181 ~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~-~aDvvt~tThKtlrGPrg-g~I~~~~~~~~~i~~avfPg-----  253 (405)
T d1kl1a_         181 AKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP-YAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFPG-----  253 (405)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTTT-----
T ss_pred             HHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhh-hhhheeccccccccCCCC-ceEEecchhHHHHHhhhCcc-----
Confidence            9999999999999999999974332    222222 68999999999 899986 89988876655555444332     


Q ss_pred             ccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLL  307 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  307 (397)
                       ..|.+-...+++...++.+. ...++.+.+++..+++.|.+.|.+  .|+.++..  .+..+++.+.+.  +.+.....
T Consensus       254 -~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~--~G~~vv~g--gTd~H~vlvdl~~~~~~g~~ae  328 (405)
T d1kl1a_         254 -IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN--EGFTLVSG--GTDNHLLLVDLRPQQLTGKTAE  328 (405)
T ss_dssp             -TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGG--SCSSSEEEEECGGGTCCHHHHH
T ss_pred             -cccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--CCceeecC--CCccceeeccccccCCcHHHHH
Confidence             23467778899998888875 457889999999999999999999  79988863  233677788774  45566666


Q ss_pred             HHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHH
Q psy8850         308 MAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       308 ~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~  371 (397)
                      ..|.  ||.+..-....  +           ...+...+.|||+.+..    ..++|++++.+.|.++++
T Consensus       329 ~~Le~agI~~Nkn~iP~--d-----------~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~  385 (405)
T d1kl1a_         329 KVLDEVGITVNKNTIPY--D-----------PESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK  385 (405)
T ss_dssp             HHHHHHTEECEECCCTT--C-----------SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCeEEcCCcCCC--C-----------CCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            6665  76555221111  0           01122247899996432    579999999999998874

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=8.1e-24  Score=190.01  Aligned_cols=335  Identities=16%  Similarity=0.196  Sum_probs=241.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHH-HHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEK-AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH   80 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~   80 (397)
                      +|...+++.|++++...+...+  +.|.. .|..|-...+ ...-+.+..+++|++...+|. ..||+.|+..++.+++ 
T Consensus        33 aSEN~~S~~v~~a~~S~l~nkYaeG~pg~-Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVq-p~SGs~AN~av~~All-  109 (416)
T d1dfoa_          33 ASENYTSPRVMQAQGSQLTNKYAEGYPGK-RYYGGCEYVDIVEQLAIDRAKELFGADYANVQ-PHSGSQANFAVYTALL-  109 (416)
T ss_dssp             TTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSEEECC-CSSHHHHHHHHHHHHC-
T ss_pred             cCcccCCHHHHHHhcCcccCcccCCCCCC-cccCCChhHHHHHHHHHHHHHHHhCCCcceee-cccCccHHHHHHHHhc-
Confidence            4666789999999999887755  46665 3444444444 444477888999998754444 4688899999999998 


Q ss_pred             hhccCCCEEEEcCCCChhhHHHHHHHhh--CCcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcccccccHHH
Q psy8850          81 FYKKRGKHIITVQTEHKSVLDSIRKLEN--DGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILE  157 (397)
Q Consensus        81 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~--~g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~l~~  157 (397)
                         +|||+|+..+..++++.........  ...+...++++.++.+|.+++++...+ +|++|++..-.+  ....|+++
T Consensus       110 ---~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~y--~r~~d~~~  184 (416)
T d1dfoa_         110 ---EPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAY--SGVVDWAK  184 (416)
T ss_dssp             ---CTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECSSC--CSCCCHHH
T ss_pred             ---CCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEeccccc--ccccCHHH
Confidence               8999999999888877654322111  146788888888899999999998765 899999875443  47788999


Q ss_pred             HHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecC---CCCccccccccCCccc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN---PRTRIEAQIHGGGHEY  229 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~---~~~~~~~~~~~~~~~~  229 (397)
                      +.++|++.|+++++|.+|..|.+    ..+... .+|++++|.|| +.||.| |+++.++.   ..+++....+.+    
T Consensus       185 ~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~-~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i~~avfPg----  258 (416)
T d1dfoa_         185 MREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP-HAHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKLNSAVFPG----  258 (416)
T ss_dssp             HHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTT-TSSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHHHHHHTTT----
T ss_pred             HHHHHHhcCceEEcchhhhhcceeccccCCccc-ccceeeeehhhcccCCCc-eEEEeccchHhHHHHHHhhhCcc----
Confidence            99999999999999999975432    222222 47999999999 899985 88888743   223343333322    


Q ss_pred             cccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec--CCChHHH
Q psy8850         230 GLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESL  306 (397)
Q Consensus       230 ~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  306 (397)
                        ..|.+-...+++...++++. ...++.+.+++..+++.|.+.|.+  .|+.++..  .+..+++.+.+.  +.+..+.
T Consensus       259 --~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~--~G~~iv~g--gTdnHlvlvdl~~~~~~G~~a  332 (416)
T d1dfoa_         259 --GQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLE--RGYKVVSG--GTDNHLFLVDLVDKNLTGKEA  332 (416)
T ss_dssp             --TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGG--SCSSSEEEEECGGGTCCHHHH
T ss_pred             --cccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh--CCcccccC--CCCCceeEEEecccCCCHHHH
Confidence              12456678889988888875 346789999999999999999999  79988853  233677777775  4566777


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i~~~~~~l~~~~~  371 (397)
                      ...|.  ||.+..-..  |.+           ...+...+.|||+.+..    ..++|++++.+.|.++++
T Consensus       333 ~~~Le~~gI~~Nkn~i--P~d-----------~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~  390 (416)
T d1dfoa_         333 DAALGRANITVNKNSV--PND-----------PKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLD  390 (416)
T ss_dssp             HHHHHHTTEECEECCC--TTC-----------SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCeEEeCCcC--CCC-----------CCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            77776  776543211  100           01122347899996432    568999999888887764

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.92  E-value=1.1e-22  Score=184.91  Aligned_cols=313  Identities=17%  Similarity=0.147  Sum_probs=219.1

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g  110 (397)
                      .+.+++...+....+++.|+++-|.+  ..+..+||..|+..++.++.    ++||+|++++..|..+...+.. +.+.|
T Consensus        50 ~~~YsR~~nPT~~~le~~la~LEg~~--~a~~~sSGmaAi~~~~l~l~----~~gd~vv~~~~~yg~t~~~~~~~~~~~g  123 (394)
T d1e5ea_          50 GYIYTRLGNPTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL----KAGDHLISDECLYGCTHALFEHALTKFG  123 (394)
T ss_dssp             SCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred             CceecCCCCHHHHHHHHHHHHHhCCc--ceeeeccchHHHHHHHHhhc----ccccccccccceeehhhHhHHHHhhccc
Confidence            45666777788999999999999977  57778899899999888888    8999999999999888777664 55669


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHH-hcCcEEEEecccccCccccccCcccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR-SKGVIFHCDAAQAVGKIDINIQNYKV  189 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~-~~gi~livD~a~~~~~~~~~~~~~~~  189 (397)
                      +.+..++..     |.+++++++++++++|+++.|.||+..+.|++.+++.++ ++|+++++|.+.+.+... +...+++
T Consensus       124 i~~~~~d~~-----d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~-~Pl~~Ga  197 (394)
T d1e5ea_         124 IQVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT-NPVDFGV  197 (394)
T ss_dssp             CEEEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC-CGGGGTC
T ss_pred             eeeeccCCC-----CHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccC-CchhcCC
Confidence            999999876     788999999999999999999999999999999888665 578999999998755432 2334589


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       190 d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      |+++.|.+|++++.+   .|+++++++.....+....     .....+.++....+-+...++    .+.-+.++..+++
T Consensus       198 DiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~-----~~~~G~~lsp~~a~ll~rgl~----TL~lRm~r~~~nA  268 (394)
T d1e5ea_         198 DVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGI-----KDITGSVISPHDAWLITRGLS----TLNIRMKAESENA  268 (394)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCC-----CCCCCCCCCHHHHHHHHHHHT----THHHHHHHHHHHH
T ss_pred             CEEEechhhhcCCCcccccccccchhhHHHHHHHHHH-----HHhhCCCCChHHHHHHHhhch----hHHHHHHHHHHHH
Confidence            999999999544333   5777777554333221100     011123344444443333333    3556778888999


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCCC--hHHHHHHhC--CcEecccCccCC----C
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFIE--GESLLMAIK--DIAVSSGSACTS----A  324 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~l~--~i~~~~g~~~~~----~  324 (397)
                      ..+.+.|++ .|.+..+.-|+              ...+.++.|.+.+..  ...+.+.|+  .....-|...+.    .
T Consensus       269 ~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~  347 (394)
T d1e5ea_         269 MKVAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPA  347 (394)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGG
T ss_pred             HHHHHHHhh-cCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccCCccceeECcc
Confidence            999999999 78775443221              123566666665321  234566665  333333433321    1


Q ss_pred             C----CChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy8850         325 S----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLR  374 (397)
Q Consensus       325 ~----~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  374 (397)
                      .    ..+....+..|+.+    +.||+|++.    |++|.+++.|.++++.+.
T Consensus       348 ~~th~~~~~~~r~~~Gi~~----~liRlSVGl----Ed~eDLi~Dl~qAl~~l~  393 (394)
T d1e5ea_         348 SMTHAVVPKEEREAAGITD----GMIRLSVGI----EDADELIADFKQGLDALL  393 (394)
T ss_dssp             GTTTTTSCHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHhcCCCc----CEEEEEecc----CCHHHHHHHHHHHHHHhh
Confidence            1    11234456677765    899999997    677777777777777654

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=2.4e-23  Score=188.85  Aligned_cols=314  Identities=13%  Similarity=0.135  Sum_probs=205.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .+++++|+|++||.++..         .+..+|...+...++++.+++++|.+ ..++||+|||+|+..++..+.    .
T Consensus        11 n~~g~~P~v~~A~~~a~~---------~~~~~~~~~~~~~~l~~~la~~~g~~-~~v~f~~sGt~An~~a~~~~~----~   76 (345)
T d1v72a1          11 NIAGASPEVAQALVKHSS---------GQAGPYGTDELTAQVKRKFCEIFERD-VEVFLVPTGTAANALCLSAMT----P   76 (345)
T ss_dssp             GGCCCCHHHHHHHHHTTS---------SCCCSTTCSHHHHHHHHHHHHHHTSC-CEEEEESCHHHHHHHHHHTSC----C
T ss_pred             CCCCCCHHHHHHHHHHhc---------cCccccCCCHHHHHHHHHHHHHHCCC-cEEEECCchHHHHHHHHHHHH----h
Confidence            345679999999987542         22233445578899999999999986 469999999999999999887    6


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC------ce-EEEEecccCccccccc---
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TI-LVSVMLVNNEIGVIQP---  154 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------~~-~v~~~~~~~~tG~~~~---  154 (397)
                      .++.+++....|.+...........+..+..++.+.++.++++++++.+.+.      +. .++.....++.|...+   
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (345)
T d1v72a1          77 PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDE  156 (345)
T ss_dssp             TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHH
T ss_pred             cCCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchh
Confidence            7888899888888887776666556778888887778889999999998753      22 3334444455555444   


Q ss_pred             HHHHHHHHHhcCcEEEEecccccCccccc-----cCcc--cccEEEeccccccCCCCceEEEEecCCCCccccccccCCc
Q psy8850         155 ILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQNY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH  227 (397)
Q Consensus       155 l~~i~~l~~~~gi~livD~a~~~~~~~~~-----~~~~--~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~  227 (397)
                      ++++.++|++||+++++|++++.+.....     ....  ..+.++.+.+|.++. ..+.+..............     
T Consensus       157 ~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----  230 (345)
T d1v72a1         157 IEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVL-AAEAIVLFNTSLATEMSYR-----  230 (345)
T ss_dssp             HHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCS-SCEEEEESSGGGHHHHHHH-----
T ss_pred             hhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccc-cccccccchhhhhhhcccc-----
Confidence            67888899999999999999874433211     1111  334455554443333 2344444422111110000     


Q ss_pred             cccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHH
Q psy8850         228 EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL  306 (397)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (397)
                       .....++.+....++. ++.... .....+...+..++..++.+.+.+ ++++.+..+..   .+++.+.++    .+.
T Consensus       231 -~~~~~~~~~~~~~aa~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~p~~---~niv~~~~~----~~~  300 (345)
T d1v72a1         231 -RKRAGHLSSKMRFLSA-QIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTE---ANILFCRLD----SAM  300 (345)
T ss_dssp             -HHHTTCCCSSTHHHHH-HHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCC---SSEEEEEEC----HHH
T ss_pred             -ccccccccchhhHHhh-hhHHHHHHhhhhhhccchhhHHHHHHHHHHh-cCCcEeccCCC---ccEEEEEcC----HHH
Confidence             0111222222222222 222222 224566677778888899999998 89998876543   345555553    344


Q ss_pred             HHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHH
Q psy8850         307 LMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK  369 (397)
Q Consensus       307 ~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  369 (397)
                      .+.|.  |+.+..+                     ..+++.|||+++..+|+||||+++++|+++
T Consensus       301 ~~~L~~~gi~v~~~---------------------~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         301 IDALLKAGFGFYHD---------------------RWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             HHHHHHTTCBCBCS---------------------SSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCcccc---------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            55554  6655432                     123489999999999999999999999874

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.5e-22  Score=182.46  Aligned_cols=313  Identities=14%  Similarity=0.121  Sum_probs=216.0

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCCc
Q psy8850          33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF  111 (397)
Q Consensus        33 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g~  111 (397)
                      +.+++...+....+++.++++-|.+  ..+.++||..|+..++.++.    ++||+|+++...|..+...+... .+.|+
T Consensus        50 ~~Y~R~~nPt~~~le~~la~LEg~~--~a~~~~SGMaAi~~~l~~l~----~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi  123 (391)
T d1cl1a_          50 LFYGRRGTLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGV  123 (391)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             eEeECCCChhHHHHHHHHHHHhCCc--cEEEeccccceeeehhhccc----CCCCeEEEecccccchhhhhhhccccccc
Confidence            4556666788999999999999976  68888999999999998888    89999999999999999998864 55699


Q ss_pred             EEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhc--CcEEEEecccccCccccccCcccc
Q psy8850         112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK--GVIFHCDAAQAVGKIDINIQNYKV  189 (397)
Q Consensus       112 ~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~--gi~livD~a~~~~~~~~~~~~~~~  189 (397)
                      ++..++..     |.+++++++++++++|+++.|.||+..+.|++.++++|+++  |++++||++.+.+... +...+++
T Consensus       124 ~~~~~d~~-----d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~-~Pl~~Ga  197 (391)
T d1cl1a_         124 TTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLF-KALDFGI  197 (391)
T ss_dssp             EEEEECTT-----CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSS-CGGGGTC
T ss_pred             ccccccCc-----cccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhh-ccccccc
Confidence            99988765     78899999999999999999999999999999999999775  9999999998765542 2233489


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ  266 (397)
Q Consensus       190 d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~  266 (397)
                      |+++.|.+|++++.+   .|+++.+++....+.....       ...+.++....+.+...++    .+.-+.++..+++
T Consensus       198 DivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~-------~~G~~~~p~~a~ll~rgl~----TL~lR~~~~~~nA  266 (391)
T d1cl1a_         198 DVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY-------LMGQMVDADTAYITSRGLR----TLGVRLRQHHESS  266 (391)
T ss_dssp             SEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH-------HTTCCCCHHHHHHHHHHHT----THHHHHHHHHHHH
T ss_pred             ceEEeecchhccccccccccceeccccccccchhhhh-------cccccCCchhhhhhhccch----hHHHHHHHHHHHH
Confidence            999999999544333   5777777655444332211       1122333333333333333    3556778888889


Q ss_pred             HHHHHHHhhhcCcEEEeCCCC--------------CCCCceEEEEecCC-ChHHHHHHhCC-----cEecccCccCCCCC
Q psy8850         267 KRLYNGLMESIEEIYINGDMN--------------NRIPHNLNISFNFI-EGESLLMAIKD-----IAVSSGSACTSASL  326 (397)
Q Consensus       267 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~l~~-----i~~~~g~~~~~~~~  326 (397)
                      ..+.+.|++ .|.+..+..++              ...++++.|.+... +.++....+.+     ....-|...+....
T Consensus       267 ~~vA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~d~L~l~~~a~SlG~~~SLi~~  345 (391)
T d1cl1a_         267 LKVAEWLAE-HPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILA  345 (391)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCBCCSCCCSSSCEEEE
T ss_pred             HHHHHHHHh-cccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHHHcCCcceEeeCCCCCccceeC
Confidence            999999988 77776553322              12346778888743 44444444442     23333433222100


Q ss_pred             ChhhHHHhhCCC--ccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         327 EPSYVLRALGCN--DELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       327 ~~~~~~~~~g~~--~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      ..+.........  ....++.||+|++.    |++|.+++.|+++++++
T Consensus       346 ~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         346 NQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFARI  390 (391)
T ss_dssp             ECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHHHT
T ss_pred             CcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            000111111100  01234789999997    67777888888777654

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=6.2e-22  Score=180.65  Aligned_cols=316  Identities=15%  Similarity=0.114  Sum_probs=212.8

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHH-hhCC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~-~~~g  110 (397)
                      .+.+++...+....+++.|+++-+.+  ..+.++||..|+..++.+++    ++||+|+++...|+++...+... .+.|
T Consensus        49 ~~~YsR~~nPT~~~LE~~la~LE~~~--~a~~~~SGmaAi~~~~~~l~----~~gd~il~~~~~Yg~t~~l~~~~~~~~g  122 (421)
T d2ctza1          49 GNIYSRIMNPTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLG  122 (421)
T ss_dssp             GGSCBTTBCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTT
T ss_pred             CceecCCCCHHHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHhhc----ccccceeecCCcCCchhHHHHHHHhhcc
Confidence            45566677788999999999999976  57788889899999999888    89999999999999999888854 5569


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCccccc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD  190 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d  190 (397)
                      +++..++.+    -..+..++.++++|++|+++.|.||+..+.|++.|+++||++|+++++|++.+.+........+++|
T Consensus       123 i~~~~~d~~----~~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaD  198 (421)
T d2ctza1         123 IEVRFTSRE----ERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAA  198 (421)
T ss_dssp             CEEEECCTT----CCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCS
T ss_pred             ccceecccc----cCcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceeccccccCCc
Confidence            999988654    1456777888999999999999999999999999999999999999999998733222233445899


Q ss_pred             EEEeccccccCCCC---ceEEEEecCCCCc-ccc--------ccccCCc----------------cccccCCCCchhHHH
Q psy8850         191 LMSFSAHKIYGPKG---IGALYIRRNPRTR-IEA--------QIHGGGH----------------EYGLRSGTLATHQIV  242 (397)
Q Consensus       191 ~~~~s~~K~~g~~g---~g~~~~~~~~~~~-~~~--------~~~~~~~----------------~~~~~~~~~~~~~~~  242 (397)
                      +++.|.+|+.++.+   .|+++.+++.... .+.        ...+...                ..+...+.++....+
T Consensus       199 iVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~  278 (421)
T d2ctza1         199 LVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAW  278 (421)
T ss_dssp             EEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred             EEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHH
Confidence            99999999544333   5777776543221 110        0000000                000011222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC---------------CCCCceEEEEecCCC--hHH
Q psy8850         243 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFIE--GES  305 (397)
Q Consensus       243 ~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~  305 (397)
                      -+...++    .+.-+.++..+++..+.+.|++ .|.+.-+.-|+               ...+.++.|.+++..  ...
T Consensus       279 l~~rgl~----TL~lRm~~~~~nA~~vA~~L~~-hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~  353 (421)
T d2ctza1         279 VVLLGME----TLSLRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKR  353 (421)
T ss_dssp             HHHHHHT----THHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHH
T ss_pred             HHhcCCc----chhhHHHHHHHHHHHHHhhhcc-CCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHH
Confidence            2222222    3566788888999999999999 78774442221               123567777776311  234


Q ss_pred             HHHHhC--CcEecccCccCC----CCC----ChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTS----ASL----EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~----~~~----~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      +.+.|+  .....-|...+.    ..+    -+.......|+.+    +.||+|++.    |++|.+++.|++++
T Consensus       354 f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~----~liRlSvGl----Ed~eDLi~DL~qAL  420 (421)
T d2ctza1         354 FISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSP----EMVRLSVGL----EHVEDLKAELKEAL  420 (421)
T ss_dssp             HHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCT----TEEEEECCS----SCHHHHHHHHHHHT
T ss_pred             HHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCc----CeEEEEecc----CCHHHHHHHHHHhc
Confidence            556665  333344433221    111    1223445667775    899999997    56666777776654

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.91  E-value=7.3e-24  Score=197.81  Aligned_cols=325  Identities=13%  Similarity=0.058  Sum_probs=202.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCc--EEEeCChhHHHHHHH
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPRE--IIWTSGATESNNLAI   75 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~--i~~~~g~t~a~~~~l   75 (397)
                      .+..+..+.|+++..........     .+  +|....+..++|+++++++.      ...+.  ++.+.+++.++..+.
T Consensus        44 ~g~~~~~~~V~~a~~~~~~~~~~-----~~--~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (412)
T d1ajsa_          44 DCQPWVLPVVRKVEQRIANNSSL-----NH--EYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGA  116 (412)
T ss_dssp             TSCCCCCHHHHHHHHHHHTCTTC-----CC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCc-----CC--CCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHH
Confidence            34455668888886665443111     11  22334567778888888763      12233  556777777776665


Q ss_pred             HHhHh---hhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEe-cc--CCCCCCCHHHHHHHh---cCCceEEEEeccc
Q psy8850          76 KGAAH---FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL-KP--KNNGLITLSQLEEKI---CSDTILVSVMLVN  146 (397)
Q Consensus        76 ~~l~~---~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v-~~--~~~~~~d~~~l~~~i---~~~~~~v~~~~~~  146 (397)
                      .++..   ...++||+|++++|+|+.+...+...   |.+++.+ +.  +..+.+|.+.+++.+   .++++++++++||
T Consensus       117 ~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~---G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~  193 (412)
T d1ajsa_         117 EFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA---GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAH  193 (412)
T ss_dssp             HHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT---TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSC
T ss_pred             HHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHc---CCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCC
Confidence            55432   22489999999999999999988887   7765443 33  234457877776654   5678999999999


Q ss_pred             Cccccccc---HHHHHHHHHhcCcEEEEecccccCccc----------cccCcccccEEEeccccccCCCC--ceEEEEe
Q psy8850         147 NEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID----------INIQNYKVDLMSFSAHKIYGPKG--IGALYIR  211 (397)
Q Consensus       147 ~~tG~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~----------~~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~  211 (397)
                      ||||.+++   +++|+++|++||++||.|++|......          .........+++.|++|.++..|  +|++++.
T Consensus       194 NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~  273 (412)
T d1ajsa_         194 NPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVV  273 (412)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEE
T ss_pred             CCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccc
Confidence            99999999   678999999999999999999732211          00111135677888889444334  7888888


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---EEE
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAF------RLARIEMKEELKRILFLQKRLYNGLMESIEE---IYI  282 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~  282 (397)
                      ......+.................++..+...+...+      +.+.+.+...+++++++++.+.+.|++ +..   +..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~-~~~~~~~~~  352 (412)
T d1ajsa_         274 AKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA-LKTPGTWNH  352 (412)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCCHH
T ss_pred             hhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCeee
Confidence            6654443222110000001111223333333222222      233445777888999999999999988 421   111


Q ss_pred             eCCCCCCCCceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHH
Q psy8850         283 NGDMNNRIPHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI  359 (397)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i  359 (397)
                      +.++    .+++  .+.+.+.+ .++.|.   ||.+.+|                         +  ||++.. .++++|
T Consensus       353 i~~~----~G~F--~~~~ls~~-~v~~L~~e~gV~~vpg-------------------------~--Ri~~ag-~~~~~i  397 (412)
T d1ajsa_         353 ITDQ----IGMF--SFTGLNPK-QVEYLINQKHIYLLPS-------------------------G--RINMCG-LTTKNL  397 (412)
T ss_dssp             HHHC----CSSE--EECCCCHH-HHHHHHHTTCEECCTT-------------------------S--EEEGGG-CCTTTH
T ss_pred             ecCC----CeEE--EecCCCHH-HHHHHHHhCCEEEeCC-------------------------C--eEEecc-CCHHHH
Confidence            2222    2222  22334443 444443   7777665                         1  999864 468899


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8850         360 DFTIKLLKMKVKKLR  374 (397)
Q Consensus       360 ~~~~~~l~~~~~~~~  374 (397)
                      ++++++|.+++++++
T Consensus       398 ~~~a~aI~~av~~~~  412 (412)
T d1ajsa_         398 DYVATSIHEAVTKIQ  412 (412)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998763

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6.1e-24  Score=197.34  Aligned_cols=320  Identities=12%  Similarity=0.071  Sum_probs=201.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCc--EEEeCChhHHHHHH
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPRE--IIWTSGATESNNLA   74 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~--i~~~~g~t~a~~~~   74 (397)
                      ..+..|.++.|++++.+....-.      .+  +|....+..++|+++++++.-      +++.  +..+.+++.++.+.
T Consensus        39 ~~g~~p~~~~V~~A~~~~~~~~~------~~--~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  110 (396)
T d2q7wa1          39 ETGKTPVLTSVKKAEQYLLENET------TK--NYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVA  110 (396)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHHCC------CC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHhhCCC------CC--CCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHH
Confidence            34445667899999888776511      11  223344677888888877531      2222  44566666665555


Q ss_pred             HHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHh---cCCceEEEEecccCcc
Q psy8850          75 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKI---CSDTILVSVMLVNNEI  149 (397)
Q Consensus        75 l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i---~~~~~~v~~~~~~~~t  149 (397)
                      +..+...  .+||.|++++|.|+.+...+...   |.+++.+|...  ++..+...+++..   .++++++++++|+|||
T Consensus       111 ~~~l~~~--~~gd~Vlvp~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPT  185 (396)
T d2q7wa1         111 ADFLAKN--TSVKRVWVSNPSWPNHKSVFNSA---GLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPT  185 (396)
T ss_dssp             HHHHHHH--SCCCEEEEEESCCTHHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTT
T ss_pred             HHHHhhc--ccceEEEEecCCCccchHHHHHc---CCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCc
Confidence            4433211  78999999999999999998888   99999998853  3445666666544   4578899999999999


Q ss_pred             ccccc---HHHHHHHHHhcCcEEEEecccccCccc----c-----ccCcccccEEEeccccccCCCC--ceEEEEecCCC
Q psy8850         150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID----I-----NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPR  215 (397)
Q Consensus       150 G~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~----~-----~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~  215 (397)
                      |.+++   +++|+++|++|+++||+|++|..-...    .     ........+++.|++|.++..|  +|++++.....
T Consensus       186 G~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~  265 (396)
T d2q7wa1         186 GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADS  265 (396)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSH
T ss_pred             CeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccchhHH
Confidence            99998   568899999999999999999733211    0     0011134577788889555444  89999987654


Q ss_pred             CccccccccCCccccccCCCCchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--EEEeCCCC
Q psy8850         216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMN  287 (397)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~  287 (397)
                      +.............+.....++..+..+....+.      .+.+.++.++++++++++.+.+.|++..+.  +.++.+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~  345 (396)
T d2q7wa1         266 ETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQN  345 (396)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCC
T ss_pred             HHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCC
Confidence            4432211100000111122333343333333322      234467788899999999999999882221  11222222


Q ss_pred             CCCCceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHH
Q psy8850         288 NRIPHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK  364 (397)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  364 (397)
                         +.+.++   +.+. +++++|.   +|.+.+|                         +  ||+++. .++++|+++++
T Consensus       346 ---G~F~~~---~l~~-e~~~~L~~e~gV~~~~g-------------------------~--Ri~~a~-l~~~~i~~~~~  390 (396)
T d2q7wa1         346 ---GMFSFS---GLTK-EQVLRLREEFGVYAVAS-------------------------G--RVNVAG-MTPDNMAPLCE  390 (396)
T ss_dssp             ---SSEEEC---CCCH-HHHHHHHHHHCEECCTT-------------------------C--EEEGGG-CCTTTHHHHHH
T ss_pred             ---eEEEee---CCCH-HHHHHHHHhCCEEECCC-------------------------C--EEEecC-CCHHHHHHHHH
Confidence               222222   3343 4555654   7877655                         2  999875 46889999999


Q ss_pred             HHHHHH
Q psy8850         365 LLKMKV  370 (397)
Q Consensus       365 ~l~~~~  370 (397)
                      +|.+++
T Consensus       391 ai~~v~  396 (396)
T d2q7wa1         391 AIVAVL  396 (396)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998763

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.7e-24  Score=201.19  Aligned_cols=321  Identities=12%  Similarity=0.051  Sum_probs=199.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCcEEEeCChhHHHHHHHHH
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIWTSGATESNNLAIKG   77 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~i~~~~g~t~a~~~~l~~   77 (397)
                      .+..|.++.|++|.......    +.. .+  +|....+..++|+++++++.-      ++++++.+.+++.+...++..
T Consensus        40 ~g~~p~~~~V~~A~~~l~~~----~~~-~~--~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  112 (397)
T d3tata_          40 DGIIPQLQAVAEAEARLNAQ----PHG-AS--LYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGA  112 (397)
T ss_dssp             TSSCCCCHHHHHHHHHHTTS----CCS-SB--CCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHhC----ccc-CC--CCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHH
Confidence            34445567888876544322    111 11  233345678899999988752      355677777666543333333


Q ss_pred             hHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCC--CCCCCHHHHHHHhc---CCceEEEEecccCccccc
Q psy8850          78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKIC---SDTILVSVMLVNNEIGVI  152 (397)
Q Consensus        78 l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~  152 (397)
                      +......+||+|++++|+|+.+...+..+   |.+++.+|++.  .+..|.+++.+.+.   +++++++++++|||||.+
T Consensus       113 ~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~---G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~  189 (397)
T d3tata_         113 DFLKRYFPESGVWVSDPTWENHVAIFAGA---GFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGAD  189 (397)
T ss_dssp             HHHHHHCSSCCCEECSSCCTTHHHHHHTT---TCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCC
T ss_pred             HHhhhcCCCCcceecccCccccHHHHHHc---CCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCee
Confidence            22222389999999999999999998877   99999999864  34567777777654   567899999999999999


Q ss_pred             cc---HHHHHHHHHhcCcEEEEecccccCccc-----c----ccCcccccEEEeccccccCCCC--ceEEEEecCCCCcc
Q psy8850         153 QP---ILEIGELCRSKGVIFHCDAAQAVGKID-----I----NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRI  218 (397)
Q Consensus       153 ~~---l~~i~~l~~~~gi~livD~a~~~~~~~-----~----~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~  218 (397)
                      ++   +++|+++|++|+++||.|++|..-...     .    ........+++.|++|.++..|  +|++++........
T Consensus       190 ~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~  269 (397)
T d3tata_         190 LTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAA  269 (397)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSSTTHH
T ss_pred             CCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchhHHHHH
Confidence            98   567899999999999999999733211     0    0111134588899999555444  79999987766554


Q ss_pred             ccccccCCcc-ccccCCCCchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--EEEeCCCCCC
Q psy8850         219 EAQIHGGGHE-YGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNR  289 (397)
Q Consensus       219 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~  289 (397)
                      .......... .....+.+...+ .++...+.      .+.+.++.+.+++.++++.+.+.|.+..+.  +.+..+..  
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~--  346 (397)
T d3tata_         270 GRVLGQLKATVRRNYSSPPNFGA-QVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQR--  346 (397)
T ss_dssp             HHHHHHHHHHTTTTTSSCCSHHH-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCC--
T ss_pred             HHHHHHHHHHhhcccccccHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCC--
Confidence            3221100000 011112222222 22222221      223345666777777778888877762222  22222322  


Q ss_pred             CCceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHH
Q psy8850         290 IPHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL  366 (397)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l  366 (397)
                       +.++++.   .+ .++++.|.   +|.+.+|                           .||+++. .++++||+++++|
T Consensus       347 -G~F~~~~---ls-~e~~~~L~~e~~V~l~~g---------------------------~Ri~~a~-~~~~~i~~~~~ai  393 (397)
T d3tata_         347 -GMFSYTG---LS-AAQVDRLREEFGVYLIAS---------------------------GRMCVAG-LNTANVQRVAKAF  393 (397)
T ss_dssp             -SSBCCCC---CC-HHHHHHHTTTTCEECCSS---------------------------SCCBTTS-CCTTTHHHHHHHH
T ss_pred             -ceEEecC---cC-HHHHHHHHHhCCEEeCCC---------------------------CEEEecc-CCHHHHHHHHHHH
Confidence             2222222   23 35566664   6777655                           2888865 6789999999999


Q ss_pred             HHHH
Q psy8850         367 KMKV  370 (397)
Q Consensus       367 ~~~~  370 (397)
                      .+++
T Consensus       394 ~~v~  397 (397)
T d3tata_         394 AAVM  397 (397)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8763

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.90  E-value=1.9e-22  Score=179.82  Aligned_cols=298  Identities=16%  Similarity=0.140  Sum_probs=203.1

Q ss_pred             HHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHH-HhhCCcEEEEeccCCCCC
Q psy8850          45 KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGL  123 (397)
Q Consensus        45 ~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~-~~~~g~~v~~v~~~~~~~  123 (397)
                      .+++.++++-|.+  ..+.++||..|+..++.+++    ++||+|+++...|.++...++. +.+.|+++++++..    
T Consensus         2 aLE~~la~Leg~~--~a~~~sSGMaAi~~~l~~ll----~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~----   71 (331)
T d1pffa_           2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA----   71 (331)
T ss_dssp             HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred             HHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc----
Confidence            4788999999876  67788999999999988888    8999999999999999888875 45569999999876    


Q ss_pred             CCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHH-HhcCcEEEEecccccCccccccCcccccEEEeccccccCC
Q psy8850         124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC-RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGP  202 (397)
Q Consensus       124 ~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~-~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~  202 (397)
                       |.+.+++++++++++|+++.+.||+..+.|++.+++++ +++|+++++|.+.+.+... +...+++|+++.|.+|++++
T Consensus        72 -d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~-~pl~~GaDiVv~S~TKy~~G  149 (331)
T d1pffa_          72 -VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT-NPLDLGVDIVVHSATKYING  149 (331)
T ss_dssp             -STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC-CGGGGTCSEEEEETTTTTSS
T ss_pred             -chhhHhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccc-cccccCCCEEEecchhhcCC
Confidence             78999999999999999999999999999999998875 6789999999998754432 23344899999999995443


Q ss_pred             CC---ceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Q psy8850         203 KG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE  279 (397)
Q Consensus       203 ~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  279 (397)
                      .+   .|+++.+++..........     .....+.++....+.+...++.    +..+.++..+++..+.+.|++ .|.
T Consensus       150 h~d~~~G~v~~~~~~~~~~~~~~~-----~~~~G~~l~p~~a~ll~rgl~T----l~~Rm~~~~~nA~~lA~~L~~-hp~  219 (331)
T d1pffa_         150 HTDVVAGLVCSRADIIAKVKSQGI-----KDITGAIISPHDAWLITRGTLT----LDMRVKRAAENAQKVAEFLHE-HKA  219 (331)
T ss_dssp             SSSCCCEEEEECHHHHHHHHHTCC-----CCCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-CTT
T ss_pred             CCccccccccccccchhhhhhhhh-----hhccCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhh-CCc
Confidence            32   5777777543222111100     0011223444444444444443    455677888888888888888 676


Q ss_pred             EEEeCCCC--------------CCCCceEEEEecCC-ChHHHHHHhC--CcEecccCccCCC--------CCChhhHHHh
Q psy8850         280 IYINGDMN--------------NRIPHNLNISFNFI-EGESLLMAIK--DIAVSSGSACTSA--------SLEPSYVLRA  334 (397)
Q Consensus       280 ~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~--------~~~~~~~~~~  334 (397)
                      +..+.-|+              ...+.++.|.+.+. ...++.+.|+  .....-|...+..        ..-+....+.
T Consensus       220 V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~  299 (331)
T d1pffa_         220 VKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREA  299 (331)
T ss_dssp             CCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHH
T ss_pred             EEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCcceecccCCCCceeEeCccccccccCCHHHHHh
Confidence            53332211              23456777777642 2344555554  2333444433221        0012233455


Q ss_pred             hCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         335 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       335 ~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .|+.+    +.||+|++.    |+.|.+++.|+++++.
T Consensus       300 ~Gi~~----~liRlsvGl----E~~~DLi~Dl~~AL~~  329 (331)
T d1pffa_         300 AGLTD----NLIRLSVGC----ENVQDIIDDLKQALDL  329 (331)
T ss_dssp             TTCCT----TEEEEECCS----SCHHHHHHHHHHHHHT
T ss_pred             cCCCc----CeEEEEeee----CCHHHHHHHHHHHHHH
Confidence            66665    899999997    5666666666666553

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.90  E-value=1.7e-22  Score=183.57  Aligned_cols=339  Identities=14%  Similarity=0.176  Sum_probs=223.3

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc---EEEeCChhHHHHHHHHHh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE---IIWTSGATESNNLAIKGA   78 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---i~~~~g~t~a~~~~l~~l   78 (397)
                      +|...+++.|++++...+...+  +.|....|.......++..-+.+..+++|+++..+   -+-..||+.|+.++..++
T Consensus        34 aSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~al  113 (463)
T d2a7va1          34 ASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL  113 (463)
T ss_dssp             TTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH
T ss_pred             ccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHH
Confidence            4666789999999998887655  46655233333233344455788999999998653   233458889999999999


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHH-----HhhCC--cEEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCcc
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRK-----LENDG--FRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEI  149 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~-----~~~~g--~~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t  149 (397)
                      +    +|||+|+..+..+.++...-..     ....|  .+...++++ +++.||.+++++...+ +|++|++-.-.+| 
T Consensus       114 l----~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~y~-  188 (463)
T d2a7va1         114 L----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA-  188 (463)
T ss_dssp             C----CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred             c----CCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEecccccc-
Confidence            8    8999999887777666533211     10012  344455556 5789999999998865 8999998765555 


Q ss_pred             cccccHHHHHHHHHhcCcEEEEecccccCc-----cccccCcccccEEEecccc-ccCCCCceEEEEecCC---------
Q psy8850         150 GVIQPILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNP---------  214 (397)
Q Consensus       150 G~~~~l~~i~~l~~~~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~---------  214 (397)
                       ...|++++.++|++.|++|++|.+|-.|.     .+-.+.  .+|++++|.|| +.||.| |+++.+++.         
T Consensus       189 -r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~--~aDvvt~tTHKTlrGPrg-GiIl~~~~~~~~~~~~~~  264 (463)
T d2a7va1         189 -RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGR  264 (463)
T ss_dssp             -SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEE
T ss_pred             -cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh--hhhhhhchhhhhhcCCCc-eEEEEcccccccccccCc
Confidence             66789999999999999999999997443     232232  57999999999 999986 999988632         


Q ss_pred             ------CCccccccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC
Q psy8850         215 ------RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN  287 (397)
Q Consensus       215 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  287 (397)
                            .+++....+.+      ..|.+-...++++..++.+.. ..++.+.+++..+++.|.+.|.+  .|+.++..  
T Consensus       265 ~~~~~~~~~i~~avFPg------~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~--~G~~vv~g--  334 (463)
T d2a7va1         265 EIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSG--  334 (463)
T ss_dssp             EEECCCHHHHHHHHTTT------TCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGG--
T ss_pred             cchhHHHHHhhhhcCcc------cchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--CCCeeecC--
Confidence                  22232222221      235677888999988888764 46899999999999999999999  79888853  


Q ss_pred             CCCCceEEEEec--CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCC----CCHHHH
Q psy8850         288 NRIPHNLNISFN--FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEI  359 (397)
Q Consensus       288 ~~~~~~~~~~~~--~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~----~~~~~i  359 (397)
                      .+..+++.+.+.  +.+.......|.  ||.+..-.....              ..+...+.|||+.+..    ..++|+
T Consensus       335 gTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D--------------~~~~~~sGiRiGT~a~TtrG~~e~dm  400 (463)
T d2a7va1         335 GTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD--------------RSAITPGGLRLGAPALTSRQFREDDF  400 (463)
T ss_dssp             SCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTC--------------CCSSSCSEEEEESHHHHHTTCCHHHH
T ss_pred             CCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCC--------------CCCCCCCceEeCCHHHHhCCCCHHHH
Confidence            333677777774  356677766665  665553221110              0122247799996432    568999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy8850         360 DFTIKLLKMKVKKLRE  375 (397)
Q Consensus       360 ~~~~~~l~~~~~~~~~  375 (397)
                      .++.+.|.+++....+
T Consensus       401 ~~iA~~I~~~l~~~~~  416 (463)
T d2a7va1         401 RRVVDFIDEGVNIGLE  416 (463)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999888764433

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.90  E-value=3.2e-22  Score=182.32  Aligned_cols=344  Identities=15%  Similarity=0.156  Sum_probs=243.8

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc---EEEeCChhHHHHHHHHHh
Q psy8850           4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE---IIWTSGATESNNLAIKGA   78 (397)
Q Consensus         4 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---i~~~~g~t~a~~~~l~~l   78 (397)
                      +|...+++.|++++...+...+  +.|....|.......++...+.+..+++|+++++.   -+-..||+.|+.++..++
T Consensus        38 aSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~al  117 (470)
T d1rv3a_          38 ASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTAL  117 (470)
T ss_dssp             TTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH
T ss_pred             cCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHh
Confidence            4566789999999998887655  46665233333333344445778889999987542   233458889999999999


Q ss_pred             HhhhccCCCEEEEcCCCChhhHHHHHHHh-------hCCcEEEEeccC-CCCCCCHHHHHHHhcC-CceEEEEecccCcc
Q psy8850          79 AHFYKKRGKHIITVQTEHKSVLDSIRKLE-------NDGFRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEI  149 (397)
Q Consensus        79 ~~~~~~~g~~vl~~~~~~~s~~~~~~~~~-------~~g~~v~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t  149 (397)
                      +    +|||+|+..+..+.++...-....       ...++...++++ +++.+|.+++++...+ +|++|++-.-.+| 
T Consensus       118 l----~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y~-  192 (470)
T d1rv3a_         118 V----EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYS-  192 (470)
T ss_dssp             T----CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred             c----CCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhhcc-
Confidence            9    899999997766655543321000       003578888888 4689999999998765 8999999765555 


Q ss_pred             cccccHHHHHHHHHhcCcEEEEecccccCc-----cccccCcccccEEEecccc-ccCCCCceEEEEecCCC--------
Q psy8850         150 GVIQPILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPR--------  215 (397)
Q Consensus       150 G~~~~l~~i~~l~~~~gi~livD~a~~~~~-----~~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~--------  215 (397)
                       ...|++++.++|++.|++|++|.+|-.|.     .+-.+.  .+|++++|.|| +.||.| |+++.+++..        
T Consensus       193 -r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~--~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~  268 (470)
T d1rv3a_         193 -RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--HCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGK  268 (470)
T ss_dssp             -SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--TCSEEEEESSGGGCCCSC-EEEEEECSBCC-------
T ss_pred             -ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh--eeeeeeeehhhhccCCcc-eEEEEccccccccccccc
Confidence             66789999999999999999999997443     332232  57999999999 899986 9998886421        


Q ss_pred             -------CccccccccCCccccccCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC
Q psy8850         216 -------TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN  287 (397)
Q Consensus       216 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  287 (397)
                             +++....+.      ...|.+-...++++..++++.. ..+..+.+++..+++.|.+.|.+  .|+.+...  
T Consensus       269 ~~~~~~~~~i~~avFP------g~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~--~G~~v~~g--  338 (470)
T d1rv3a_         269 EILYNLESLINSAVFP------GLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE--LGYKIVTG--  338 (470)
T ss_dssp             CCBCCHHHHHHHHHTT------TTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGG--
T ss_pred             hhHHHHHHHHhhhcCc------cccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHh--CCceeccC--
Confidence                   112222221      1235677889999988888764 36889999999999999999999  78888753  


Q ss_pred             CCCCceEEEEec--CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCC----CCCHHHH
Q psy8850         288 NRIPHNLNISFN--FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEI  359 (397)
Q Consensus       288 ~~~~~~~~~~~~--~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~----~~~~~~i  359 (397)
                      .+..+++.+.+.  +.+..+..+.|.  ||.+..-..  |++            ..+...+.|||+.+.    ...++|+
T Consensus       339 gTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~i--P~D------------~~~~~~sGiRiGT~alTtrG~~e~dm  404 (470)
T d1rv3a_         339 GSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTC--PGD------------KSALRPSGLRLGTPALTSRGLLEKDF  404 (470)
T ss_dssp             SCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECC--SSC------------SCTTSCCEEEEECHHHHHTTCCHHHH
T ss_pred             CCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcC--CCC------------CCCCCCCeeEecCHHHHhCCCCHHHH
Confidence            233677777775  456777776676  665543211  100            012224779998643    3579999


Q ss_pred             HHHHHHHHHHHHHHHhcCccc
Q psy8850         360 DFTIKLLKMKVKKLRELSPLW  380 (397)
Q Consensus       360 ~~~~~~l~~~~~~~~~~~~~~  380 (397)
                      +++.+.|.++++...+...+.
T Consensus       405 ~~iA~~I~~~l~~~~~~~~~~  425 (470)
T d1rv3a_         405 QKVAHFIHRGIELTVQIQDDT  425 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhhhcc
Confidence            999999999997666554444

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=6.4e-23  Score=187.98  Aligned_cols=165  Identities=15%  Similarity=0.076  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhccCCCEE-EEc-CCCChhhHHHHHHHhhCCcEEEEecc
Q psy8850          42 AIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRGKHI-ITV-QTEHKSVLDSIRKLENDGFRVTYLKP  118 (397)
Q Consensus        42 ~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~v-l~~-~~~~~s~~~~~~~~~~~g~~v~~v~~  118 (397)
                      ...++++..++.++.. .+++++++|+++|+..++.++.     +++.| +++ .++|+++...+...   |.+++  +.
T Consensus        51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-----~~~~vi~~~~~~~~~~~~~~~~l~---g~~~v--~~  120 (366)
T d2aeua1          51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-----PKKVIHYLPELPGHPSIERSCKIV---NAKYF--ES  120 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-----CSEEEEECSSSSCCTHHHHHHHHT---TCEEE--EE
T ss_pred             hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-----CCCEEEEecCCCcchhHHHHHHhc---CCeEE--CC
Confidence            4456777778888764 4579999999999999998865     45554 444 57899999888776   77753  33


Q ss_pred             CCCCCCCHHHHHHHhcCCceEEEEecccCccc-ccccHHHHHHHHHhcCcEEEEecccccCcccc----ccCcccccEEE
Q psy8850         119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIG-VIQPILEIGELCRSKGVIFHCDAAQAVGKIDI----NIQNYKVDLMS  193 (397)
Q Consensus       119 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG-~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~----~~~~~~~d~~~  193 (397)
                      +     |+++++++++++|++|++.+++||++ .+.++++|+++|++||+++++|++|+.+....    .....++|+++
T Consensus       121 ~-----d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~  195 (366)
T d2aeua1         121 D-----KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVV  195 (366)
T ss_dssp             S-----CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEE
T ss_pred             C-----CHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEE
Confidence            3     89999999999999999999988754 57789999999999999999999998543221    11234789999


Q ss_pred             eccccccCCCCceEEEEecCCCCccccc
Q psy8850         194 FSAHKIYGPKGIGALYIRRNPRTRIEAQ  221 (397)
Q Consensus       194 ~s~~K~~g~~g~g~~~~~~~~~~~~~~~  221 (397)
                      +|++|.+++.++|+++++++..+.+...
T Consensus       196 ~S~sK~~~g~~~G~i~~~~~~i~~~~~~  223 (366)
T d2aeua1         196 TSTDKLMEGPRGGLLAGKKELVDKIYIE  223 (366)
T ss_dssp             EETTSSSSSCSCEEEEEEHHHHHHHHHH
T ss_pred             ecccccccccceeEEEecHHHHHHHHHH
Confidence            9999954444579999998776665443

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.90  E-value=5.3e-23  Score=190.39  Aligned_cols=284  Identities=12%  Similarity=0.063  Sum_probs=188.0

Q ss_pred             HHHHHHHHHHhC----C--CCCcEEEeCChhHHHHHHHHHhHhh----hccCCCEEEEcCCCChhhHHHHHHHhhCCcEE
Q psy8850          44 EKARNEVAQLIY----A--DPREIIWTSGATESNNLAIKGAAHF----YKKRGKHIITVQTEHKSVLDSIRKLENDGFRV  113 (397)
Q Consensus        44 ~~~~~~la~~~~----~--~~~~i~~~~g~t~a~~~~l~~l~~~----~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v  113 (397)
                      .++++.|++++.    +  +..+|++++|+++++.+++.+|...    ...||++|+++.|.|+.+......+   +.+.
T Consensus       103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~---~~~~  179 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYF---DKKG  179 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHS---CBTT
T ss_pred             HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHc---CCCC
Confidence            467777777653    2  3335999999999999999998421    1168899999999999998877766   4333


Q ss_pred             EEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEE
Q psy8850         114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS  193 (397)
Q Consensus       114 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~  193 (397)
                      ..+      .+|.+.++++++++++++++++||||||.+..       +-.+++.+|.|++|.......-....+.++++
T Consensus       180 ~~~------~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~~~~~~Ivl  246 (425)
T d2hoxa1         180 YVW------AGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADEDILL  246 (425)
T ss_dssp             EEE------EEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCSCBCCSEEE
T ss_pred             Ccc------CCCHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchhhhcCCeEEE
Confidence            322      34778888888899999999999999998632       23358999999999754332112233678999


Q ss_pred             eccccccCCCC--ceEEEEecCCC-CccccccccCCccccccCCCCchhHHHHHHHHHHHHHH-----------HHHHHH
Q psy8850         194 FSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI-----------EMKEEL  259 (397)
Q Consensus       194 ~s~~K~~g~~g--~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~-----------~~~~~~  259 (397)
                      .|++|.+|..|  +|+++++++.+ ..+.....       +...+.+.....+..++++....           .++..+
T Consensus       247 ~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~-------~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~  319 (425)
T d2hoxa1         247 FTMSKFTGHSGSRFGWALIKDESVYNNLLNYMT-------KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGF  319 (425)
T ss_dssp             EEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHH-------HHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHH
T ss_pred             EeCHHhccCcchheeeEEeCCHHHHHHHHHhhc-------cCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            99999777656  78888875432 22222211       11122333333333355554321           245567


Q ss_pred             HHHHHHHHHHHHHHhhhcCcEEEeCCCCC-----------CCCceEEEEecCCChHHHHHHhC--CcEecccCccCCCCC
Q psy8850         260 KRILFLQKRLYNGLMESIEEIYINGDMNN-----------RIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSASL  326 (397)
Q Consensus       260 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~  326 (397)
                      +.++++++++.+.|++ .+.+.+...+..           ..+.+.++.+...+.....+.|+  ||.+.+|..|..   
T Consensus       320 ~~l~~r~~~l~~~L~~-~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~pGs~FG~---  395 (425)
T d2hoxa1         320 KKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA---  395 (425)
T ss_dssp             HHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTS---
T ss_pred             HHHHHHHHHHHHHHHh-cCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEechhcCC---
Confidence            7888888999999988 655543322111           11233455554323333333343  999999976642   


Q ss_pred             ChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Q psy8850         327 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVK  371 (397)
Q Consensus       327 ~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  371 (397)
                                     .++++||++..  +++++++++++|+++++
T Consensus       396 ---------------~~~yvRisl~~--~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         396 ---------------SSRYVRLSLIK--TQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             ---------------CTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred             ---------------CCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence                           13799999974  78999999999999875

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.89  E-value=7.4e-21  Score=175.16  Aligned_cols=331  Identities=13%  Similarity=0.094  Sum_probs=222.1

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEE
Q psy8850          10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI   89 (397)
Q Consensus        10 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~v   89 (397)
                      ..+-++++.+.+.+-       .+....  .+...++++.+++++|.+  ..++++|||.|+.++++++..   ++||+|
T Consensus        12 ~~~~~~~~~~~l~~g-------~~~~~~--g~~v~~fE~~~a~~~g~~--~~v~~~SGt~Al~lal~~l~~---~~gdeV   77 (384)
T d1b9ha_          12 DDAERNGLVRALEQG-------QWWRMG--GDEVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMGV---GPGTEV   77 (384)
T ss_dssp             CHHHHHHHHHHHHTS-------CCBTTT--CSHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC---CTTCEE
T ss_pred             CHHHHHHHHHHHHcC-------CeeecC--CHHHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHcCC---CCCCEE
Confidence            466788888888751       111111  135788999999999988  789999999999999998743   789999


Q ss_pred             EEcCCCChhhHHHHHHHhhCCcEEEEeccCC-CCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcE
Q psy8850          90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI  168 (397)
Q Consensus        90 l~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~  168 (397)
                      ++++..|+++..++...   |.+++.+++++ ++.+|++.+++.+++++++|++++.   .|...+++++.++|+++|++
T Consensus        78 i~p~~t~~a~~~ai~~~---g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~---~g~~~d~~~i~~~~~~~~i~  151 (384)
T d1b9ha_          78 IVPAFTFISSSQAAQRL---GAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHM---AGLMADMDALAKISADTGVP  151 (384)
T ss_dssp             EEESSSCTHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHHTCC
T ss_pred             EEecccccccccccccc---ccccccccccccccccchhhhcccccccccccccccc---cccccccccchhhhhhhhhh
Confidence            99999999999988887   99999999884 6889999999999999999987765   78899999999999999999


Q ss_pred             EEEecccccCccccccCcc----cccEEEecccc-ccCCCCceEEEEecCCCCc-cccccc-cCCc---cc-------cc
Q psy8850         169 FHCDAAQAVGKIDINIQNY----KVDLMSFSAHK-IYGPKGIGALYIRRNPRTR-IEAQIH-GGGH---EY-------GL  231 (397)
Q Consensus       169 livD~a~~~~~~~~~~~~~----~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~-~~~~~~-~~~~---~~-------~~  231 (397)
                      ||+|++++.|.... -...    ...+++++.+| +..+. .|+++.+++.... ++.... +...   ..       ++
T Consensus       152 lieD~a~a~ga~~~-g~~~g~~g~~~~~Sf~~~K~i~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~  229 (384)
T d1b9ha_         152 LLQDAAHAHGARWQ-GKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGS  229 (384)
T ss_dssp             BCEECTTCTTCEET-TEEGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCC
T ss_pred             hhhhhceecccccC-CEecCcccccceecccccccccccc-cchhhhhhHHHHHHHHHHHhcCCCCcccccccccccccc
Confidence            99999999877532 1111    23445555688 44444 4888877554322 222111 1100   00       00


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC--C-CCCceEEEEecCCCh---HH
Q psy8850         232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--N-RIPHNLNISFNFIEG---ES  305 (397)
Q Consensus       232 ~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~---~~  305 (397)
                      ..-..+..+.+++ ..|    +.+++..++.+++.+++.+.|.+ ++++.....+.  . ...+...+.++....   .+
T Consensus       230 n~rms~l~Aaig~-~qL----~~ld~~~~~R~~~~~~y~~~L~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~  303 (384)
T d1b9ha_         230 NMRLNEFSASVLR-AQL----ARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNA  303 (384)
T ss_dssp             BCBCBHHHHHHHH-HHH----TTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHH
T ss_pred             ccccccchhhhhh-hhh----hhcccchhhhhhhhhhhhhhhhc-ccccccccccccccccccccccceecccccccHHH
Confidence            1101111111111 222    24566777888889999999998 88875543322  1 222344555554332   45


Q ss_pred             HHHHhC--CcEecccCccCCCCCChhhHHHhhCCCc--------------cccCceEEEeeCCCCC-HHHHHHHHHHHHH
Q psy8850         306 LLMAIK--DIAVSSGSACTSASLEPSYVLRALGCND--------------ELAHSSIRFTIGRFTT-EKEIDFTIKLLKM  368 (397)
Q Consensus       306 ~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~--------------~~~~~~iRi~~~~~~~-~~~i~~~~~~l~~  368 (397)
                      +.+.|.  ||.....  +.|.  +....++.+|...              ....+.|.|.+....+ ++|++++++.|++
T Consensus       304 l~~~L~~~GI~~~~~--y~pl--h~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~  379 (384)
T d1b9ha_         304 LVDRLVEAGLPAFAA--FRAI--YRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD  379 (384)
T ss_dssp             HHHHHHHTTCCEEEC--CCCG--GGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCeeee--Ccch--hcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHH
Confidence            788887  7766543  3331  1112334433221              2234678998887776 6899999999999


Q ss_pred             HHHH
Q psy8850         369 KVKK  372 (397)
Q Consensus       369 ~~~~  372 (397)
                      ++++
T Consensus       380 ~l~~  383 (384)
T d1b9ha_         380 AVAR  383 (384)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9875

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.8e-22  Score=183.01  Aligned_cols=313  Identities=16%  Similarity=0.160  Sum_probs=198.2

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      +.|+|++++||.++..   ++.   .|.    ..+...++++.+++++|.+  .+++++|||+|+.+++.++.    +++
T Consensus        10 t~p~p~v~~A~~~a~~---g~~---~yg----~~p~~~~le~~lA~~~G~~--~~~~~~sGt~A~~~al~a~~----~~g   73 (343)
T d1m6sa_          10 TKPTEEMRKAMAQAEV---GDD---VYG----EDPTINELERLAAETFGKE--AALFVPSGTMGNQVSIMAHT----QRG   73 (343)
T ss_dssp             CCCCHHHHHHHHTCCC---CCG---GGT----CCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHHC----CTT
T ss_pred             CCCCHHHHHHHHhhhc---CCc---ccC----CCHHHHHHHHHHHHHHCCC--eEEEeCCHHHHHHHHHHHHh----ccC
Confidence            5568899999865431   111   222    2346789999999999976  78999999999999999888    789


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCC------ceEE-EEecccCccccccc---HH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILV-SVMLVNNEIGVIQP---IL  156 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~------~~~v-~~~~~~~~tG~~~~---l~  156 (397)
                      +.+++..+.|.++..........+..+..++.+ .+..|++.+++.++..      +..+ +...+++++|.+.|   ++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (343)
T d1m6sa_          74 DEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIK  152 (343)
T ss_dssp             CEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred             Cceeccccccceeeecccccccccceeeccccc-cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHH
Confidence            999999988877765555444446666666544 4557999999998753      3444 44455566677766   46


Q ss_pred             HHHHHHHhcCcEEEEecccccCccccccC-----cccccEEEecccc-ccCCCCceEEEEecCCCCccccccccCCcccc
Q psy8850         157 EIGELCRSKGVIFHCDAAQAVGKIDINIQ-----NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       157 ~i~~l~~~~gi~livD~a~~~~~~~~~~~-----~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +|.++|+++|+++++|++++.+.......     ....+..+++.+| ..|.. .|++...++..........       
T Consensus       153 ~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~-------  224 (343)
T d1m6sa_         153 EICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV-GSVVVGDRDFIERARKARK-------  224 (343)
T ss_dssp             HHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS-CEEEEECHHHHHHHHHHHH-------
T ss_pred             HHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccc-cccccccHHHHhhhHhhCc-------
Confidence            77888899999999999987443221110     1134556666666 45554 4666665433222221110       


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC--CChHHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLM  308 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  308 (397)
                      ...++.......+. ....... ......+...++..++.+.+.+ +.+.....+..   .+++.+.+++  .+..++.+
T Consensus       225 ~~~~~~~~~~~~~a-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~v~~~~~~~~~~a~~l~~  298 (343)
T d1m6sa_         225 MLGGGMRQAGVLAA-AGIIALT-KMVDRLKEDHENARFLALKLKE-IGYSVNPEDVK---TNMVILRTDNLKVNAHGFIE  298 (343)
T ss_dssp             HHTCCCSSTHHHHH-HHHHHHH-HSSTTHHHHHHHHHHHHHHHHH-HTCBCCGGGCC---SSEEEEECTTSSSCHHHHHH
T ss_pred             ccccccchhHHHHH-hhhhhhh-hhHHHHHHHHHHHHHhhhHHHH-hccCccCCCCC---ceEEEEEeCCCcccHHHHHH
Confidence            11112222222221 1111111 1122334445555666666666 44443333222   4566666653  45678888


Q ss_pred             HhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         309 AIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       309 ~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                      .|.  ||.+.+.                       +.+.+||+++..+|+||||+++++|+++++++
T Consensus       299 ~L~~~Gi~v~~~-----------------------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         299 ALRNSGVLANAV-----------------------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             HHHHHTEECEEE-----------------------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEecC-----------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            887  8877643                       13789999999899999999999999999886

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.89  E-value=3.4e-22  Score=186.18  Aligned_cols=320  Identities=12%  Similarity=0.072  Sum_probs=197.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCcEEE--eCChhHHHHHHHH
Q psy8850           5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIW--TSGATESNNLAIK   76 (397)
Q Consensus         5 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~------~~~~i~~--~~g~t~a~~~~l~   76 (397)
                      +..+.++.|+++.+.....    +.. .+  +|....+..++|+++++++.-      .++.+..  +.+++.++..++.
T Consensus        44 g~~~~~~~V~~A~~~l~~~----~~~-~~--~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (412)
T d1yaaa_          44 GKPWVLPSVKAAEKLIHND----SSY-NH--EYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAK  116 (412)
T ss_dssp             SCBCCCHHHHHHHHHHHTC----TTC-CC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHhC----ccc-CC--CCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHH
Confidence            3345568888875544332    111 12  223344677888888877531      2222222  2333433333322


Q ss_pred             HhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHhc---CCceEEEEecccCcccc
Q psy8850          77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVNNEIGV  151 (397)
Q Consensus        77 ~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~  151 (397)
                      .+  ....+||+|++++|+|+.+...+...   |.+++.+|..  .++.++.+.+++.+.   +++++++++++|||||.
T Consensus       117 ~~--~~~~~gd~Vlip~P~~~~y~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~  191 (412)
T d1yaaa_         117 FF--SKFFPDKLVYLSKPTWANHMAIFENQ---GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGL  191 (412)
T ss_dssp             HH--HHHCTTCCEEEEESCCTTHHHHHHTT---TCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCC
T ss_pred             HH--hccCCCCEEecccccCchhHHHHHHc---CCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccc
Confidence            11  12278999999999999999888777   9999999874  345677888877764   45779999999999999


Q ss_pred             ccc---HHHHHHHHHhcCcEEEEecccccCccc------c-------ccCcccccEEEeccccccCCCC--ceEEEEecC
Q psy8850         152 IQP---ILEIGELCRSKGVIFHCDAAQAVGKID------I-------NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRN  213 (397)
Q Consensus       152 ~~~---l~~i~~l~~~~gi~livD~a~~~~~~~------~-------~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~  213 (397)
                      +++   +++|+++|+++++++|.|++|......      .       ........+++.|++|.++..|  +|+++++.+
T Consensus       192 ~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~  271 (412)
T d1yaaa_         192 DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALT  271 (412)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECC
T ss_pred             cCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchh
Confidence            998   678999999999999999999732211      0       0111234588899999655444  899999987


Q ss_pred             CCCccccccccC----CccccccCCCCchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---E
Q psy8850         214 PRTRIEAQIHGG----GHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE---I  280 (397)
Q Consensus       214 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~  280 (397)
                      ............    ....+.....++.........+++      .+.+.++.+++.++++++.+.+.|++ +..   +
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~g~~~~~  350 (412)
T d1yaaa_         272 KQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK-LGTPGNW  350 (412)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence            765543211000    000001112223222222222222      23445778889999999999999988 421   2


Q ss_pred             EEeCCCCCCCCceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHH
Q psy8850         281 YINGDMNNRIPHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK  357 (397)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~  357 (397)
                      .++.+.    ++++  .+.+.+. ++.+.|.   +|.+.+|                           .||++.. .+++
T Consensus       351 ~~~~~~----gG~F--~~~~ls~-e~~~~L~~e~~V~~~~g---------------------------~Ris~~g-~~~~  395 (412)
T d1yaaa_         351 DHIVNQ----CGMF--SFTGLTP-QMVKRLEETHAVYLVAS---------------------------GRASIAG-LNQG  395 (412)
T ss_dssp             THHHHC----CSSE--EECCCCH-HHHHHHHHHHCEECCTT---------------------------SEEEGGG-CCTT
T ss_pred             ceeCCC----ceEE--EecCcCH-HHHHHHHHhCCEEECCC---------------------------CEEEecc-CCHH
Confidence            222222    2332  2233444 4555654   6777654                           2999864 4678


Q ss_pred             HHHHHHHHHHHHHHH
Q psy8850         358 EIDFTIKLLKMKVKK  372 (397)
Q Consensus       358 ~i~~~~~~l~~~~~~  372 (397)
                      +|+++.++|.++++.
T Consensus       396 ~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         396 NVEYVAKAIDEVVRF  410 (412)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998764

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=5e-23  Score=191.06  Aligned_cols=316  Identities=13%  Similarity=0.059  Sum_probs=193.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhC----CC-CCcEEEeCChhHH--HHHHH
Q psy8850           3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY----AD-PREIIWTSGATES--NNLAI   75 (397)
Q Consensus         3 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~-~~~i~~~~g~t~a--~~~~l   75 (397)
                      ..+..++++.|++++++......      .+  +|...++..++|+++++++.    .. ....+++.|++.+  +.+.+
T Consensus        39 ~~g~~~~~~~V~~A~~~~~~~~~------~~--~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (394)
T d2ay1a_          39 ATGHTPIMRAVHAAEQRMLETET------TK--TYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALEL  110 (394)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHHCC------CC--CCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHhhCCC------CC--CCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHH
Confidence            34555677899999988876521      11  12223456777777777752    21 1234455555544  44444


Q ss_pred             HHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC--CCCCCCHHHHHHHh---cCCceEEEEecccCccc
Q psy8850          76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKI---CSDTILVSVMLVNNEIG  150 (397)
Q Consensus        76 ~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i---~~~~~~v~~~~~~~~tG  150 (397)
                      ..+.    ++||+|++++|.|+.+...++.+   |.+++.++..  ..+..+.+++++..   .+++++++++++|||||
T Consensus       111 ~~~~----~~gd~V~~p~p~~~~y~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG  183 (394)
T d2ay1a_         111 ARMA----NPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTG  183 (394)
T ss_dssp             HHHH----CTTCCEEEEESCCHHHHHHHHHH---TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTC
T ss_pred             hhhc----CCceEEEEecccccchHHHHHHc---CCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCC
Confidence            4444    78999999999999999999988   9999999875  33445666665544   45678999999999999


Q ss_pred             cccc---HHHHHHHHHhcCcEEEEecccccCcccc---------ccCcccccEEEeccccccCCCC--ceEEEEecCCCC
Q psy8850         151 VIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRT  216 (397)
Q Consensus       151 ~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~~---------~~~~~~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~  216 (397)
                      .+++   +++|+++|++|+++||.|++|.......         ........+++.|++|.++..|  +|++.+......
T Consensus       184 ~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~  263 (394)
T d2ay1a_         184 ANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAA  263 (394)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHH
T ss_pred             CCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhchhHHH
Confidence            9999   5788999999999999999997332110         0111123466778888444333  788888865443


Q ss_pred             ccccccccCCccc-cccCCCCchhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--EEEeCCCC
Q psy8850         217 RIEAQIHGGGHEY-GLRSGTLATHQIVGMGEAF------RLARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMN  287 (397)
Q Consensus       217 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~al------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~  287 (397)
                      ............. ....+.+...+ ......+      +.+.+.++.+++++.++++.|.+.|++..+.  +.+..+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~  342 (394)
T d2ay1a_         264 TRELAQGAMAFLNRQTYSFPPFHGA-KIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHR  342 (394)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCCHHH-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCC
T ss_pred             HHHHhhhhhHhhhcccccchhHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCc
Confidence            3221110000000 01111222222 1111111      1233457778888999999999999872221  12222222


Q ss_pred             CCCCceEEEEecCCChHHHHHHhC---CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHH
Q psy8850         288 NRIPHNLNISFNFIEGESLLMAIK---DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK  364 (397)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~l~---~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~  364 (397)
                         +.+.++   +.+ .+++++|.   +|.+.+|                           .||+++. .++++|+++++
T Consensus       343 ---G~F~~~---~ls-~~~~~~L~~~~~V~~~~g---------------------------~Ri~~a~-l~~~~i~~l~~  387 (394)
T d2ay1a_         343 ---GMFSRL---GAT-PEQVKRIKEEFGIYMVGD---------------------------SRINIAG-LNDNTIPILAR  387 (394)
T ss_dssp             ---SSEEEC---CCC-HHHHHHHHHHHCEECCTT---------------------------CEEEGGG-CCTTTHHHHHH
T ss_pred             ---eeEEec---CcC-HHHHHHHHHhCCEEecCC---------------------------CEEEecC-CCHHHHHHHHH
Confidence               222222   233 34556664   7877765                           2999875 57899999999


Q ss_pred             HHHHH
Q psy8850         365 LLKMK  369 (397)
Q Consensus       365 ~l~~~  369 (397)
                      +|.++
T Consensus       388 ai~~v  392 (394)
T d2ay1a_         388 AIIEV  392 (394)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=1.9e-20  Score=171.88  Aligned_cols=312  Identities=15%  Similarity=0.150  Sum_probs=207.0

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|++.+++.+++......+..  +     ..+...++.+.+.+......+.+.+++||++|++.+++... .++++
T Consensus        51 lGh~hp~v~~a~~~~~~~~~~~~~~--~-----~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar-~~t~r  122 (387)
T d1vefa1          51 LGHGNPEVVEAVKRQAETLMAMPQT--L-----PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFAR-AHTGR  122 (387)
T ss_dssp             TCBTCHHHHHHHHHHHHHCCCCCTT--S-----CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHH-HHHSC
T ss_pred             hcCCcHHHHHHHHHHHHhhcccccc--c-----CCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHH-hhccc
Confidence            4566899999999999874322211  1     12234455555555554444469999999999999999654 44454


Q ss_pred             CCEEEEcCCCC-hhhHHHHHHHhh---------CCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCccccccc-
Q psy8850          86 GKHIITVQTEH-KSVLDSIRKLEN---------DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-  154 (397)
Q Consensus        86 g~~vl~~~~~~-~s~~~~~~~~~~---------~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~-  154 (397)
                       .+|+.....| +.+..+......         ....+..+|.+     |++.|++.+.+++.+|+++.++...|...+ 
T Consensus       123 -~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~  196 (387)
T d1vefa1         123 -KKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-----DVEALKRAVDEETAAVILEPVQGEGGVRPAT  196 (387)
T ss_dssp             -CEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-----CHHHHHHHCCTTEEEEEECSEETTTTSEECC
T ss_pred             -ceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC-----CHHHHHHhcCCCeEEEEEECCCCCCCCccCC
Confidence             5666666555 444444332110         01235556654     899999999999999999999988898766 


Q ss_pred             ---HHHHHHHHHhcCcEEEEecccc-cCccc----cccCcccccEEEecccc-ccCCCCceEEEEecCCCCccccccccC
Q psy8850         155 ---ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG  225 (397)
Q Consensus       155 ---l~~i~~l~~~~gi~livD~a~~-~~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~~~  225 (397)
                         ++++.++|++||+++|+|++++ +|...    .......+|+++++  | +.|+...+.+..+++....+.+..++ 
T Consensus       197 ~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~~~~~~~~~~~~~~~~g-  273 (387)
T d1vefa1         197 PEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA--KALGGGVPLGVAVMREEVARSMPKGGHG-  273 (387)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHHTSCTTSSC-
T ss_pred             HHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeec--ccCCCCccccccccceeeeeccccCCcc-
Confidence               8999999999999999999996 33321    11223468999998  9 65544567777776554444433322 


Q ss_pred             CccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--EEEeCCCCCCCCceEEEEecCCCh
Q psy8850         226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNFIEG  303 (397)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  303 (397)
                           .+.+. |...+++..++++.+.+  .+..++..++.+++.+.|++ +..  +.-+.    ..+.++.+.++....
T Consensus       274 -----~T~~g-nPla~aaa~a~L~~l~~--~~~~~~v~~~g~~l~~~L~~-l~~~~v~~vr----g~Gl~~~ie~~~~~~  340 (387)
T d1vefa1         274 -----TTFGG-NPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRA-IPSPKIREVR----GMGLMVGLELKEKAA  340 (387)
T ss_dssp             -----CSSTT-CHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHT-SCCTTEEEEE----EETTEEEEEESSCSH
T ss_pred             -----ccCCC-Ccchhhhcccchhhccc--ccccchHhhhhHHHHHHHHh-cCCCceEEEe----ecceEEEEEEeCCch
Confidence                 22222 44555555578888865  55677888888899999987 422  21111    114466677775555


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                      ..+...+.  ++.+.+.                       .++.||++++..+|+++||++++++++++
T Consensus       341 ~~~~~~~~~~g~l~~~~-----------------------g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         341 PYIARLEKEHRVLALQA-----------------------GPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             HHHHHHHHHHCEECEES-----------------------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCeEEec-----------------------CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence            55554443  5443321                       13789999999999999999999999876

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.88  E-value=7.6e-20  Score=167.83  Aligned_cols=333  Identities=13%  Similarity=0.092  Sum_probs=222.3

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCE
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH   88 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~   88 (397)
                      ..++-++++.+.+.+-       .+..|    +...++++.+++++|..  .+++++|||.|+.+++.++.... +.+++
T Consensus        10 ~~~~~~~~v~~~l~~~-------~~~~G----~~v~~fE~~~~~~~g~k--~ai~~~Sgt~Al~~al~al~~~~-~~~~e   75 (371)
T d2fnua1          10 LDKEDKKAVLEVLNSK-------QLTQG----KRSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEFS-ADRNE   75 (371)
T ss_dssp             CCHHHHHHHHHHHTSS-------CCSSS----HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCCC-TTSCE
T ss_pred             CCHHHHHHHHHHHcCC-------CccCC----HHHHHHHHHHHHHHCcC--eEEEEecHHHHHHHHHHHhcccC-CCCCe
Confidence            3567788888888651       22222    35788999999999988  78999999999999999875311 22358


Q ss_pred             EEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcE
Q psy8850          89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI  168 (397)
Q Consensus        89 vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~  168 (397)
                      |+++..+++++..++...   |.+++.++++.+..++.+++++++++++++|+++|.   .|...++++|.++|+++|++
T Consensus        76 Vi~p~~t~~a~~~ai~~~---G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~---~G~~~~~~~i~~~~~~~~i~  149 (371)
T d2fnua1          76 IITTPISFVATANMLLES---GYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSLS  149 (371)
T ss_dssp             EEECSSSCTHHHHHHHHT---TCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTCE
T ss_pred             eecccccccccceeeecc---Ccccccccccccccccchhhhhhccchhhccccccc---cccccccccccccccccchh
Confidence            999999999999988888   999999999987778889999999999999999876   69999999999999999999


Q ss_pred             EEEecccccCcccccc---CcccccEEEecccc-ccCCCCceEEEEecCC-CCccccccccCCc----------cccccC
Q psy8850         169 FHCDAAQAVGKIDINI---QNYKVDLMSFSAHK-IYGPKGIGALYIRRNP-RTRIEAQIHGGGH----------EYGLRS  233 (397)
Q Consensus       169 livD~a~~~~~~~~~~---~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~  233 (397)
                      ||+|++|+.|...-+-   ..-.+.+.++...| +.++ +.|+++.+++. .+.+......+..          ..++..
T Consensus       150 lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~  228 (371)
T d2fnua1         150 FLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTA-EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNF  228 (371)
T ss_dssp             EEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBC
T ss_pred             hccchhhccCceeccccCCccccccccccccccccccc-cceEEEeechhhhhhcccccccccccccccccccccccccc
Confidence            9999999988753221   11123344445578 4444 45888877542 2222221111100          001111


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCC--CCCCceEEEEecCC---ChHHHHH
Q psy8850         234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--NRIPHNLNISFNFI---EGESLLM  308 (397)
Q Consensus       234 ~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~  308 (397)
                      -..+..+..++ ..|    +.+++..++.+++..++.+.|.+ .+++.+..+..  ....+.+.+.+...   ...++.+
T Consensus       229 r~sel~Aaigl-~qL----~~l~~~~~~R~~~~~~y~~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~  302 (371)
T d2fnua1         229 RLNEIQSALGL-SQL----KKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILE  302 (371)
T ss_dssp             CCCHHHHHHHH-HHH----TTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHH
T ss_pred             cccchhhhhhh-hhh----hhccchhhhhhhhhhhhcccccc-cccccccccccccccccccccccccccchhHHHHHHH
Confidence            11122222222 122    24566777778888888999988 78877654322  23344455555432   2356777


Q ss_pred             HhC--CcEecccCccCCCCCChhhHHHhhCCC------ccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         309 AIK--DIAVSSGSACTSASLEPSYVLRALGCN------DELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       309 ~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~------~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .|.  ||.+...  +.|...  ...++.....      .......|.+.+....+.+|++++++.|.++++.
T Consensus       303 ~L~~~gI~~~~~--y~pl~~--~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         303 SLHKRGILAQVH--YKPIYQ--YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             HHHHTTEECBCC--CCCGGG--SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCccee--Cccccc--CHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            776  7776544  333111  1222222111      1223468899888889999999999999998875

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=6e-21  Score=173.21  Aligned_cols=309  Identities=16%  Similarity=0.174  Sum_probs=205.4

Q ss_pred             CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CC
Q psy8850          32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DG  110 (397)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g  110 (397)
                      .|.+++...+....+++.|+++-|.+  ..++++||..|+.+++. ++    .+||+|+++...|+.+...+....+ .|
T Consensus        46 ~y~YsR~gnPT~~~lE~~la~LE~~~--~a~~~sSGmaAi~~~l~-~l----~~gd~iv~~~~~yg~t~~~~~~~l~~~g  118 (393)
T d1n8pa_          46 TYEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SL----PQGSHAVSIGDVYGGTHRYFTKVANAHG  118 (393)
T ss_dssp             SCCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TS----CSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred             CeeeeCCCChHHHHHHHHHHHHhCCc--eEEEecCchhHHHhhhh-cc----cCCCeeeeeeeecccchhhhhhhhhccc
Confidence            46677777789999999999999876  56777888788876554 44    6889999999999999888887654 48


Q ss_pred             cEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHH----hcCcEEEEecccccCccccccCc
Q psy8850         111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR----SKGVIFHCDAAQAVGKIDINIQN  186 (397)
Q Consensus       111 ~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~----~~gi~livD~a~~~~~~~~~~~~  186 (397)
                      .++..++.      +.+++++++++++++|+++.|.||+..+.|++.|+++||    ++|++++||++.+.+... +...
T Consensus       119 i~~~~~~~------~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~-~Pl~  191 (393)
T d1n8pa_         119 VETSFTND------LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLN  191 (393)
T ss_dssp             SCCEEESS------HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGG
T ss_pred             ceeEEeec------chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccC-Cchh
Confidence            88877752      467899999999999999999999999999999999999    679999999998754432 2234


Q ss_pred             ccccEEEeccccccCCCC---ceEEEEecC-CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8850         187 YKVDLMSFSAHKIYGPKG---IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI  262 (397)
Q Consensus       187 ~~~d~~~~s~~K~~g~~g---~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~  262 (397)
                      +++|+++.|.+|++++.+   .|+++.+++ ...++.....       ...+.++....+.+...++    .+.-+.++.
T Consensus       192 ~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~-------~~G~~~~p~~a~ll~rgl~----Tl~lR~~~~  260 (393)
T d1n8pa_         192 FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQN-------AIGAIPSPFDAWLTHRGLK----TLHLRVRQA  260 (393)
T ss_dssp             GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHHT----THHHHHHHH
T ss_pred             hCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHh-------hcCCCCChHHHHHHHhCCc----chhhHHHHH
Confidence            489999999999544333   476666543 2222322111       1122344333333333333    345567788


Q ss_pred             HHHHHHHHHHHhhhcCcEEEeCCCC----------------CCCCceEEEEecCC-C-hHHHHHHhC--CcEecccCccC
Q psy8850         263 LFLQKRLYNGLMESIEEIYINGDMN----------------NRIPHNLNISFNFI-E-GESLLMAIK--DIAVSSGSACT  322 (397)
Q Consensus       263 ~~~~~~l~~~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-~-~~~~~~~l~--~i~~~~g~~~~  322 (397)
                      .+++..+.+.|++..+.+..+.-+.                ...++++.|.+++. + ...+.+.|+  .....-|...+
T Consensus       261 ~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~S  340 (393)
T d1n8pa_         261 ALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIES  340 (393)
T ss_dssp             HHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred             HHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHHHHHhCCcceecccCCCcCc
Confidence            8888889999976235444432221                12256788887642 1 345666665  33333443322


Q ss_pred             ----CCCCC----hhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHH
Q psy8850         323 ----SASLE----PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       323 ----~~~~~----~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  373 (397)
                          |..+.    +....+..|+.+    +.||||++.    |++|.+++.|.+++++.
T Consensus       341 Li~~p~~~~h~~~~~~~r~~~gi~~----~liRlSvGl----E~~~DLi~Dl~~AL~~a  391 (393)
T d1n8pa_         341 LLEVPAVMTHGGIPKEAREASGVFD----DLVRISVGI----EDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             EEECTTTTTSCSSCTTTTTTTSCCT----TEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred             eEeCchhhccccCCHHHHHhcCCCc----CEEEEEecc----CCHHHHHHHHHHHHHHh
Confidence                11111    112223444443    899999997    66777777777766653

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.87  E-value=9.3e-21  Score=170.38  Aligned_cols=313  Identities=16%  Similarity=0.144  Sum_probs=186.1

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCC
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG   86 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g   86 (397)
                      ..++|+|++++.+....         +..+|...+..+++|+.+++++|+++++|+||+|||+|+.+++..+.    .++
T Consensus        10 ~g~~P~v~eAl~~~~~~---------~~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~----~~~   76 (340)
T d1svva_          10 VGMHPKILDLMARDNMT---------QHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL----RPW   76 (340)
T ss_dssp             SCCCHHHHHHHHHHTTC---------CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC----CTT
T ss_pred             CCCCHHHHHHHHHHhhc---------CCCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHh----hhc
Confidence            34588999999886543         12223345677899999999999998899999999999999999887    788


Q ss_pred             CEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcC------CceEEEEecccCccccccc---HHH
Q psy8850          87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILE  157 (397)
Q Consensus        87 ~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~---l~~  157 (397)
                      +++++....|.+.......... +............ .+.+...++...      .+..+++....+++|.+.+   +..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (340)
T d1svva_          77 EAVIATQLGHISTHETGAIEAT-GHKVVTAPCPDGK-LRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELED  154 (340)
T ss_dssp             EEEEEETTSHHHHSSTTHHHHT-TCCEEEECCTTSC-CCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHH
T ss_pred             cccccccccceeeeeccccccc-ceeeeeccccccc-ccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhh
Confidence            9999988888777655554433 3333333322222 233433333321      2334444445555666554   566


Q ss_pred             HHHHHHhcCcEEEEecccccCccccccCcc-------cccEEEeccccccCCCCceEEEEecCCCCccccccccCCcccc
Q psy8850         158 IGELCRSKGVIFHCDAAQAVGKIDINIQNY-------KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG  230 (397)
Q Consensus       158 i~~l~~~~gi~livD~a~~~~~~~~~~~~~-------~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~  230 (397)
                      +.+.|+++|.++++|+++..+....+....       ..++...+..|..+..+.+................       .
T Consensus       155 ~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  227 (340)
T d1svva_         155 ISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLI-------K  227 (340)
T ss_dssp             HHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHH-------H
T ss_pred             hhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhc-------c
Confidence            788899999999999998754433222211       24566666556333333333333322222211111       0


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHH
Q psy8850         231 LRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMA  309 (397)
Q Consensus       231 ~~~~~~~~~~~~~l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (397)
                      ...++.+.... +..+++..... ......++...++.++.+.|++  .++.+..+..   ..++.+.++    .+....
T Consensus       228 ~~~~~~~~~~~-~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~p~~---~~~v~~~~~----~~~~~~  297 (340)
T d1svva_         228 QRGALMAKGWL-LGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEA--CGIRLAWPSA---SNQLFPILE----NTMIAE  297 (340)
T ss_dssp             HTTCCCTTTHH-HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCCS---SSEECBEEE----HHHHHH
T ss_pred             cccCccchhhH-HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhc--CCCeeecCCC---ceEEEEeCC----HHHHHH
Confidence            11122222222 22233333222 3566778888889999999998  6777665433   333333433    244445


Q ss_pred             hCCcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         310 IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       310 l~~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                      |..-....+....                 ...++.||++++..+|++|||+++++|++
T Consensus       298 l~~~~~~~~~~~~-----------------~~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         298 LNNDFDMYTVEPL-----------------KDGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             HTTTEECEEEEEE-----------------TTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HHHhhhhhccccc-----------------CCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5421111111111                 12248899999999999999999999986

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.85  E-value=1e-19  Score=167.19  Aligned_cols=326  Identities=13%  Similarity=0.099  Sum_probs=201.2

Q ss_pred             HHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcC
Q psy8850          14 VDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ   93 (397)
Q Consensus        14 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~   93 (397)
                      ++++.+.+.+        .+..+  ..+...++++.+++++|..  ..++++|||.|+.++++++-.   ++||+|++++
T Consensus         4 ~~~~~~~l~~--------~~~~~--~G~~~~~fE~~~~~~~~~~--~~~~~~SgT~Al~lal~~l~~---~~gdeVi~p~   68 (374)
T d1o69a_           4 LKYIEEVFKS--------NYIAP--LGEFVNRFEQSVKDYSKSE--NALALNSATAALHLALRVAGV---KQDDIVLASS   68 (374)
T ss_dssp             HHHHHHHHHH--------TTTSC--TTHHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC---CTTCEEEEES
T ss_pred             HHHHHHHHhc--------CCcCC--CCHHHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHcCC---CCcCEEEeCC
Confidence            5677777766        22111  0236788999999999988  799999999999999998743   7899999999


Q ss_pred             CCChhhHHHHHHHhhCCcEEEEeccCCCCC-CCHH--HHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEE
Q psy8850          94 TEHKSVLDSIRKLENDGFRVTYLKPKNNGL-ITLS--QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH  170 (397)
Q Consensus        94 ~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~-~d~~--~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~li  170 (397)
                      .+|+++..++..+   |.+++.++++++.. ++.+  +++..++.+++++++++.   .|...+++++.++|+++|++||
T Consensus        69 ~t~~a~~~~~~~~---g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vI  142 (374)
T d1o69a_          69 FTFIASVAPICYL---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLI  142 (374)
T ss_dssp             SSCGGGTHHHHHT---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEE
T ss_pred             cchHhhHHHHhhc---cceeEecccccccccccccccccchhccccccccccccc---ccchhhhHHHHHHhhccCcchh
Confidence            9999999998888   99999999986432 3333  334566778999999887   6999999999999999999999


Q ss_pred             EecccccCccccccCcc--cccEEEeccc--cccCCCCceEEEEecCC-CCccccccccCC-cc-------ccccCCCCc
Q psy8850         171 CDAAQAVGKIDINIQNY--KVDLMSFSAH--KIYGPKGIGALYIRRNP-RTRIEAQIHGGG-HE-------YGLRSGTLA  237 (397)
Q Consensus       171 vD~a~~~~~~~~~~~~~--~~d~~~~s~~--K~~g~~g~g~~~~~~~~-~~~~~~~~~~~~-~~-------~~~~~~~~~  237 (397)
                      +|+||++|...-. ...  ..|+.++||+  |.++..|.|+++.+++. ...+......+. ..       .++..-..+
T Consensus       143 ED~a~a~g~~~~~-~~~G~~gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~e  221 (374)
T d1o69a_         143 EDAAEALGSFYKN-KALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSN  221 (374)
T ss_dssp             EECTTCTTCEETT-EETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCH
T ss_pred             hhhhhhhcceECC-eecCCCCceEEEeccCccccccccceeehhhhHHHHHhhccccccccccccccccccCCccccccc
Confidence            9999998875321 111  2477777776  74443345777776442 222221111110 00       011111112


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec------------------
Q psy8850         238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN------------------  299 (397)
Q Consensus       238 ~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  299 (397)
                      ..+.+++ ..++    .++.+.++.+++++++.+.|.+ ...+...........+...+.+.                  
T Consensus       222 i~Aaig~-~qL~----~l~~~i~~r~~i~~~y~~~L~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (374)
T d1o69a_         222 VLGAIGV-AQME----VLEQRVLKKREIYEWYKEFLGE-YFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQK  295 (374)
T ss_dssp             HHHHHHH-HHHT----THHHHHHHHHHHHHHHHHHHTT-TEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCC
T ss_pred             hhhhhhH-HHHh----hhhhhcchhHHHHHHHHhhccc-cccccccccCCCCChhheeeeeccccccccccccccccchh
Confidence            2222222 2222    3455666677778888888876 32211111100111111111111                  


Q ss_pred             ----CCChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhC-----CCccccCceEEEeeCCCCCHHHHHHHHHHHHH
Q psy8850         300 ----FIEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALG-----CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM  368 (397)
Q Consensus       300 ----~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g-----~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~  368 (397)
                          ......+.+.|+  ||..++..  .+....  ..++...     .........|.+.+...+|++|+++.++.|.+
T Consensus       296 ~~~~~~~r~~l~~~L~~~gI~~r~~y--~pl~~~--~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~  371 (374)
T d1o69a_         296 NITLHPKISKLIEDLKNKQIETRPLW--KAMHTQ--EVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILK  371 (374)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCCBCCC--CCGGGC--GGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             hccchhhHHHHHHHHHHCCCCEEEeC--cchhhC--hhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHH
Confidence                011356777776  77665432  221100  0111000     00112346788888888999999999999998


Q ss_pred             HHH
Q psy8850         369 KVK  371 (397)
Q Consensus       369 ~~~  371 (397)
                      +++
T Consensus       372 ~lk  374 (374)
T d1o69a_         372 SIK  374 (374)
T ss_dssp             HHC
T ss_pred             HHC
Confidence            763

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.9e-19  Score=166.38  Aligned_cols=325  Identities=14%  Similarity=0.137  Sum_probs=197.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChhHHHHHHHHHhHhhhcc
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKK   84 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~t~a~~~~l~~l~~~~~~   84 (397)
                      .+..+|.|.+++.+++.... ....  ..   ...+...++.+.+.+++.-. .+.+++++||++|++.+++... .+++
T Consensus        54 lGh~~p~i~~ai~~q~~~~~-~~~~--~~---~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar-~~t~  126 (425)
T d1sffa_          54 TGHLHPKVVAAVEAQLKKLS-HTCF--QV---LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIAR-AATK  126 (425)
T ss_dssp             TCBTCHHHHHHHHHHTTTCS-CCCT--TT---EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHH-HHHT
T ss_pred             ccCCcHHHHHHHHHHHhhcC-Cccc--cc---ccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhh-hhhc
Confidence            34568999999999987622 1111  11   11234566788888888643 3469999999999999999544 4445


Q ss_pred             CCCEEEEcCCCChh-hHHHHHHHhhCC----------cEEEEeccC--CCCCCC---HHHHHHHh-----cCCceEEEEe
Q psy8850          85 RGKHIITVQTEHKS-VLDSIRKLENDG----------FRVTYLKPK--NNGLIT---LSQLEEKI-----CSDTILVSVM  143 (397)
Q Consensus        85 ~g~~vl~~~~~~~s-~~~~~~~~~~~g----------~~v~~v~~~--~~~~~d---~~~l~~~i-----~~~~~~v~~~  143 (397)
                      + .+|+.....|++ +..+........          ......+.+  ......   ....++.+     ..++.+|+++
T Consensus       127 r-~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~E  205 (425)
T d1sffa_         127 R-SGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIE  205 (425)
T ss_dssp             C-CEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred             c-cceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEec
Confidence            4 556665555555 444443322110          112222222  111110   01111111     2357899999


Q ss_pred             cccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccCCCCceEEEEecC
Q psy8850         144 LVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN  213 (397)
Q Consensus       144 ~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~  213 (397)
                      .++...|.+.|    ++.|.++|++||+++|+|++++. |..    ..+.....+|+++++  | +.|+.++|+++++++
T Consensus       206 Pi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P~~av~~~~~  283 (425)
T d1sffa_         206 PVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFPLAGVTGRAE  283 (425)
T ss_dssp             SBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSCCEEEEEEHH
T ss_pred             CccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecc--cccCCCcceEEEEEcHH
Confidence            99888887765    78999999999999999999984 322    122233478999988  9 655556899999987


Q ss_pred             CCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhcCcEEEeCCCCCC
Q psy8850         214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNG----LMESIEEIYINGDMNNR  289 (397)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~~~~~~~~~~  289 (397)
                      ..+.+.+...+      .+.+. +...+++..++|+.+.+  ....++...+.+++.+.    +++ .+.+.-+..    
T Consensus       284 i~~~~~~~~~~------~T~~g-npl~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~-~~~v~~vrg----  349 (425)
T d1sffa_         284 VMDAVAPGGLG------GTYAG-NPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLLAIAEK-HPEIGDVRG----  349 (425)
T ss_dssp             HHTTSCTTSBC------CSSSS-CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHT-CTTEEEEEE----
T ss_pred             HHHhhCCCCCC------CCCCc-CHHHHHHHHHHHHHHHH--hhhhhhhhhhhhhhhhhhhhhHhh-CCceEEEEc----
Confidence            65555443322      22333 34555666688888876  33344444444444444    444 444322221    


Q ss_pred             CCceEEEEecC-----CCh----HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHH
Q psy8850         290 IPHNLNISFNF-----IEG----ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE  358 (397)
Q Consensus       290 ~~~~~~~~~~~-----~~~----~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~  358 (397)
                      .+.++.+.|..     ...    ..+...+.  |+.+.+..                     ...+.||++++..+|++|
T Consensus       350 ~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g---------------------~~~n~i~~~PpL~it~~e  408 (425)
T d1sffa_         350 LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCG---------------------PYYNVLRILVPLTIEDAQ  408 (425)
T ss_dssp             ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEES---------------------TTSCEEEECCCTTCCHHH
T ss_pred             cccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccC---------------------CCCCEEEEECCCCCCHHH
Confidence            14566666632     111    23444443  66655431                     113789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy8850         359 IDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       359 i~~~~~~l~~~~~~~~~  375 (397)
                      ||+++++|++++++++|
T Consensus       409 id~~l~~l~~al~eikk  425 (425)
T d1sffa_         409 IRQGLEIISQCFDEAKQ  425 (425)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999875

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-19  Score=166.10  Aligned_cols=315  Identities=15%  Similarity=0.150  Sum_probs=207.4

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|+|.+++.+++......+ . .+.     ......+.+.++++.+.+  .+.++++|++|++.+++.......   
T Consensus        56 Gh~~p~i~~Av~~q~~~~~~~~-~-~~~-----~~~~~~~~~~~~~~~~~~--~v~~~~sGseA~e~Aik~ar~~~~~~~  126 (404)
T d2byla1          56 GHCHPKIVNALKSQVDKLTLTS-R-AFY-----NNVLGEYEEYITKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVK  126 (404)
T ss_dssp             CBTCHHHHHHHHHHHTTCCCCC-T-TEE-----ESSHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHhhCCCcc-c-ccc-----cchHHHHHHhhhhccccc--ccccccCccccchhHHHHHHHHhhhcc
Confidence            5678999999999997632111 1 111     123455677788887764  799999999999999997553221   


Q ss_pred             ---cCCCEEEEcCCCCh-hhHHHHHHHh----hC-----CcEEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcc
Q psy8850          84 ---KRGKHIITVQTEHK-SVLDSIRKLE----ND-----GFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEI  149 (397)
Q Consensus        84 ---~~g~~vl~~~~~~~-s~~~~~~~~~----~~-----g~~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t  149 (397)
                         ..+..++.....|+ .+..+.....    +.     ...+..+|.+     |++++++++.+ +..+|+++.+....
T Consensus       127 ~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~l~~~~iAaviiEPi~g~~  201 (404)
T d2byla1         127 GIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQDPNVAAFMVEPIQGEA  201 (404)
T ss_dssp             CCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT-----CHHHHHHHHTSTTEEEEEECSSBTTT
T ss_pred             ccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc-----CHHHHHHhcCCCCeEEEEECCccCCC
Confidence               12345555444444 4433332211    00     1234455554     88999999865 67889999999888


Q ss_pred             ccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCCCCcc
Q psy8850         150 GVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRI  218 (397)
Q Consensus       150 G~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~  218 (397)
                      |.+.+    +++|.++|++||+++|+|+++. +|..    ..+.....+|+++++  | +.|+ ..+|.++++++..+.+
T Consensus       202 G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p~~av~~~~~i~~~~  279 (404)
T d2byla1         202 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLG--KALSGGLYPVSAVLCDDDIMLTI  279 (404)
T ss_dssp             TSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHTTS
T ss_pred             CCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEEEEC--chhhCCCccceeeeechhhhhcc
Confidence            98776    8999999999999999999986 2222    122233468999887  9 6553 4589999987765555


Q ss_pred             ccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEe
Q psy8850         219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF  298 (397)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  298 (397)
                      .+..++      .+. ..+...+++..++|+.+.+  .++.++..++.+++.+.|.+ +..-.+..-++  .+.+..+.+
T Consensus       280 ~~~~~~------~T~-~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~~-l~~~~i~~vRg--~Gl~~~i~~  347 (404)
T d2byla1         280 KPGEHF------STY-GGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMK-LPSDVVTAVRG--KGLLNAIVI  347 (404)
T ss_dssp             CTTSSC------CSS-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHT-SCTTTEEEEEE--ETTEEEEEE
T ss_pred             CCCCCC------cCC-CcCHHHHHHHHHHHHHHHh--cCchhhhhHhhHHHHHHHHh-hccccceeeee--cccEEEEEE
Confidence            544322      112 2345566666688888876  45677788888888888887 43200110011  134555665


Q ss_pred             cC---CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         299 NF---IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       299 ~~---~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .+   ....++...+.  |+.+.+.                       .++.||++++..+|+++||+++++|++++++
T Consensus       348 ~~~~~~~~~~~~~~l~~~Gvl~~~~-----------------------~~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         348 KETKDWDAWKVCLRLRDNGLLAKPT-----------------------HGDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             CCCSSCCHHHHHHHHHHTTEECEEE-----------------------ETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ecCCchhHHHHHHHHHhCCeEEecC-----------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence            43   23455666665  7766532                       1378999999999999999999999998864

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.84  E-value=1.7e-20  Score=175.84  Aligned_cols=303  Identities=18%  Similarity=0.155  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccC
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK  119 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~  119 (397)
                      .+...++++.+++++|.+  .+++++||+.|+.+++++++    ++||+|+.... +.++...+...   |.....+..+
T Consensus        74 dpt~~~lE~~~a~l~G~e--~al~~~SGt~An~~a~~~l~----~~Gd~Vi~~~~-f~~~~~~i~~~---g~~~~~~~~~  143 (456)
T d1c7ga_          74 SENFYHLEKTVKELFGFK--HIVPTHQGRGAENLLSQLAI----KPGQYVAGNMY-FTTTRFHQEKN---GATFVDIVRD  143 (456)
T ss_dssp             CHHHHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHHC----CTTEEEEESSC-CHHHHHHHHHT---TEEEEECBCG
T ss_pred             CchHHHHHHHHHHHhCCC--eEEECCCHHHHHHHHHHHhc----CCCCeEecCcc-hHHHHHHHHHc---Cceeeecccc
Confidence            457888999999999988  78999999999999999987    89999887554 45555555554   7777665432


Q ss_pred             ----------CCCCCCHHHHHHHhcC----CceEEEEecccCccc-cccc---HHHHHHHHHhcCcEEEEecccccCccc
Q psy8850         120 ----------NNGLITLSQLEEKICS----DTILVSVMLVNNEIG-VIQP---ILEIGELCRSKGVIFHCDAAQAVGKID  181 (397)
Q Consensus       120 ----------~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG-~~~~---l~~i~~l~~~~gi~livD~a~~~~~~~  181 (397)
                                ..+.+|+++|+++|++    ++.+++++.++|+.| ...|   +++|.++|++||+++|+|+++.++...
T Consensus       144 ~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~  223 (456)
T d1c7ga_         144 EAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAY  223 (456)
T ss_dssp             GGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHH
T ss_pred             ccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchh
Confidence                      2467899999999975    356889999999875 4445   678899999999999999998644311


Q ss_pred             ------cccCc-----------ccccEEEecccc-ccCCCCceEEEEecCCC-Cccccc--cccCCccccccCCCCchhH
Q psy8850         182 ------INIQN-----------YKVDLMSFSAHK-IYGPKGIGALYIRRNPR-TRIEAQ--IHGGGHEYGLRSGTLATHQ  240 (397)
Q Consensus       182 ------~~~~~-----------~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~  240 (397)
                            .....           -.+|++++|++| +.++.| |+++.+++.+ ++++..  ..++    ....+..+...
T Consensus       224 ~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~~r~~~~~~~g----~~~~g~~~~~~  298 (456)
T d1c7ga_         224 FIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAKELVVVYEG----MPSYGGLAGRD  298 (456)
T ss_dssp             HHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHHHHHHHHHHTC----CTTTTTCCHHH
T ss_pred             hhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHHHHHhccccCC----CcccchhhHHH
Confidence                  01110           147999999999 455544 8877775422 222221  1111    11223444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEe----cCC-----ChHHHHHHhC
Q psy8850         241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF----NFI-----EGESLLMAIK  311 (397)
Q Consensus       241 ~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~l~  311 (397)
                      +.++...+.....  ....++..++.++|.+.|.+  .++.+..+..   .+...+..    +..     ...++...+.
T Consensus       299 ~~a~a~~l~e~~~--~~~l~~r~~~~~~L~e~L~~--~g~~vv~p~g---~~~v~vda~~~~~~i~~~~~~~~~~~~~l~  371 (456)
T d1c7ga_         299 MEAMAIGLREAMQ--YEYIEHRVKQVRYLGDKLRE--AGVPIVEPTG---GHAVFLDARRFCPHLTQDQFPAQSLAASIY  371 (456)
T ss_dssp             HHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHH--TTCCBCSSCC---SSEEEEEHHHHCTTSCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHh--ccCCcccCCC---CcceeEechhhccCCCcccccHHHHHHHHH
Confidence            5554444443321  23444556667888899988  4555555433   23333321    111     1233333332


Q ss_pred             ---CcEecccCccCCCCCChhhHHHhhCCCc------cccCceEEEeeC-CCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         312 ---DIAVSSGSACTSASLEPSYVLRALGCND------ELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       312 ---~i~~~~g~~~~~~~~~~~~~~~~~g~~~------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                         ||...+-..          .  ..+..+      .-....+|++++ ...|+++||+++++|+++.++..+.
T Consensus       372 ~~~GIr~~~~g~----------~--~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~i  434 (456)
T d1c7ga_         372 METGVRSMERGI----------V--SAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDI  434 (456)
T ss_dssp             HHHSEECEEESH----------H--HHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGGC
T ss_pred             HHhCeeecccCc----------c--ccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhhc
Confidence               553322110          0  111111      112356999987 3459999999999999988766554

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=1.5e-18  Score=159.08  Aligned_cols=304  Identities=13%  Similarity=0.109  Sum_probs=207.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEEcCCCChhhHHHHHHHhh-CCcEEE
Q psy8850          36 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVT  114 (397)
Q Consensus        36 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~-~g~~v~  114 (397)
                      ....-+.+.+++++|+++.|.+..+.....|++.....++.+..  + .++++++++...|+++......... .|++++
T Consensus       103 sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~--~-~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv  179 (437)
T d1wyua1         103 SQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR--E-TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL  179 (437)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH--H-HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHh--h-hcccccccccccChHHhhhhhhhcccceeeEE
Confidence            34455788899999999999986667777788776666655432  2 3457899999999999887665544 499999


Q ss_pred             EeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHhcCcEEEEecccccCccccccCcccccEEEe
Q psy8850         115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF  194 (397)
Q Consensus       115 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~~gi~livD~a~~~~~~~~~~~~~~~d~~~~  194 (397)
                      .+|.++.+.. .++    +.+++.+|++++|++ .|.+.+++++.+++|+.|.++++|+.......-....++++|++++
T Consensus       180 ~v~~~~~~~~-~~~----~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g  253 (437)
T d1wyua1         180 TLPLEGGRTP-LPE----VGEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVG  253 (437)
T ss_dssp             EECCBTTBCC-CCC----CCTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEE
T ss_pred             eeecccccch-hhh----hccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEee
Confidence            9998755432 222    567899999999965 5898999999999999999988886543222222344568999999


Q ss_pred             ccccc-----cCCCCceEEEEecCCCCcccccccc------CCcc-----------ccccCCCCch---hHHHHHHH--H
Q psy8850         195 SAHKI-----YGPKGIGALYIRRNPRTRIEAQIHG------GGHE-----------YGLRSGTLAT---HQIVGMGE--A  247 (397)
Q Consensus       195 s~~K~-----~g~~g~g~~~~~~~~~~~~~~~~~~------~~~~-----------~~~~~~~~~~---~~~~~l~~--a  247 (397)
                      +.+++     +|+++.|++.++++....+...+.+      +...           .+...++.|.   ....++.+  .
T Consensus       254 ~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y  333 (437)
T d1wyua1         254 DGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMY  333 (437)
T ss_dssp             ECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHH
T ss_pred             ccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHH
Confidence            95555     3344579999998766555443332      1100           0111222222   12222222  2


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecCCChHHHHHHhC--CcEecccCccCCC
Q psy8850         248 FR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK--DIAVSSGSACTSA  324 (397)
Q Consensus       248 l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~  324 (397)
                      +. +..+|++++.++...++.++.+.|.+ ++++....+ . ....-+.+.++ .+..++.++|.  |+.  .+....+ 
T Consensus       334 ~~~lG~~GL~~ia~~a~~~A~yl~~~L~~-~~g~~~~~~-~-~~f~ef~v~~~-~~~~~i~k~L~d~G~~--~~~~~~~-  406 (437)
T d1wyua1         334 LAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTP-K-PFFNEFALALP-KDPEAVRRALAERGFH--GATPVPR-  406 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSC-S-SBCSEEEEECS-SCHHHHHHHHHHTTCC--CCEECCT-
T ss_pred             hhhcCcccHHHHHHHHHHHHHHHHHHhhh-cCCeeccCC-C-CeeeEEEEECC-CCHHHHHHHHHhCCCC--CCccccc-
Confidence            33 22568999999999999999999998 888876543 2 12344455554 56788888876  442  2211111 


Q ss_pred             CCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHH
Q psy8850         325 SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKV  370 (397)
Q Consensus       325 ~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~  370 (397)
                                     ...++.+.|+++...|+++||+++++|++++
T Consensus       407 ---------------~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         407 ---------------EYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             ---------------TSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             ---------------CCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence                           1124789999999999999999999999863

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.83  E-value=1.4e-17  Score=153.78  Aligned_cols=316  Identities=17%  Similarity=0.157  Sum_probs=195.6

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|+|++++.+++....- ... ..     .......+.+.++++.+.+  .+.++.+|++|++.+++.......   
T Consensus        54 Gh~~p~v~~Ai~~q~~~~~~-~~~-~~-----~~~~~~~~~~~~~~~~~~~--~v~~~~sgs~a~~~a~k~ar~~~~~~~  124 (404)
T d1z7da1          54 GHCHPNILNAMINQAKNLTI-CSR-AF-----FSVPLGICERYLTNLLGYD--KVLMMNTGAEANETAYKLCRKWGYEVK  124 (404)
T ss_dssp             CBTCHHHHHHHHHHHTTCSC-CCT-TS-----EEHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTS
T ss_pred             hcCcHHHHHHHHHHHHhCCC-ccc-cc-----chHHHHHHHHhhhhccccc--eeeeeccccchHHHHHHHHHHHHhhcc
Confidence            45689999999999876321 111 11     1123456777788887764  799999999999999886543221   


Q ss_pred             ---cCCCEEEEcCCCChhhHHHHHHHhh-CCc---------EEEEeccCCCCCCCHHHHHHHhcC-CceEEEEecccCcc
Q psy8850          84 ---KRGKHIITVQTEHKSVLDSIRKLEN-DGF---------RVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEI  149 (397)
Q Consensus        84 ---~~g~~vl~~~~~~~s~~~~~~~~~~-~g~---------~v~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~t  149 (397)
                         .....++.....|+........... ...         .+..+|.+     +.+.++..+.+ ++.+|+++.++...
T Consensus       125 ~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~iAavi~EPi~g~~  199 (404)
T d1z7da1         125 KIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDPNVCAFIVEPIQGEA  199 (404)
T ss_dssp             CCCTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHHHTSTTEEEEEECSSBSTT
T ss_pred             cccccccccccccccCCCCcccccccccccccccCCCCCCccccccccc-----hHHHHHHHhcCCCEEEEEEEEEcCCC
Confidence               1123566666655554433332211 111         12222222     57777777754 67899999999999


Q ss_pred             ccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----ccccCcccccEEEecccc-ccCC-CCceEEEEecCCCCcc
Q psy8850         150 GVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IYGP-KGIGALYIRRNPRTRI  218 (397)
Q Consensus       150 G~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~~~~~~~~~d~~~~s~~K-~~g~-~g~g~~~~~~~~~~~~  218 (397)
                      |.+.|    +++|.++|++||+++|+|++++ +|..    ........+|+++++  | +.|+ ..+|+++++++....+
T Consensus       200 G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~p~~~v~~~~~i~~~~  277 (404)
T d1z7da1         200 GVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLG--KALSGGHYPISAVLANDDIMLVI  277 (404)
T ss_dssp             TSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHTTC
T ss_pred             CCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEEEc--ccccCCCCCcccccchHHHHccC
Confidence            98877    8999999999999999999996 3221    122233468999888  9 6443 4579999998766665


Q ss_pred             ccccccCCccccccCCCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEE
Q psy8850         219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI  296 (397)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  296 (397)
                      .+...+      .+.+. +...+++..++|+.+.+.  +++..+......+.+.+.+++ .+.+.-+..    .+.++.+
T Consensus       278 ~~~~~~------~T~~g-npl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~vrg----~Gl~~~i  345 (404)
T d1z7da1         278 KPGEHG------STYGG-NPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD-SKIVRDVRG----KGLLCAI  345 (404)
T ss_dssp             CTTCCC------CTTTT-CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEEEE----ETTEEEE
T ss_pred             CCCCcC------cCCCC-CcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhc-CCCeEEEEe----eCcEEEE
Confidence            544332      12222 445555555788876552  333334444455555555555 444432221    1456667


Q ss_pred             EecCC--ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         297 SFNFI--EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       297 ~~~~~--~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                      .|...  ...++...+.  |+.+.+.                       .++.|||.++..+|+++||+++++|.+++++
T Consensus       346 ~~~~~~~~~~~~~~~l~~~Gl~~~~~-----------------------~~~~ir~~Ppl~it~~~id~~~~~l~~alk~  402 (404)
T d1z7da1         346 EFKNELVNVLDICLKLKENGLITRDV-----------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVKF  402 (404)
T ss_dssp             EECTTTCCHHHHHHHHHHTTEECCEE-----------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCcccHHHHHHHHHhCCeEEecC-----------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHh
Confidence            77642  3345655554  7766432                       1378999999889999999999999999976


Q ss_pred             H
Q psy8850         373 L  373 (397)
Q Consensus       373 ~  373 (397)
                      +
T Consensus       403 ~  403 (404)
T d1z7da1         403 F  403 (404)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.6e-20  Score=177.83  Aligned_cols=316  Identities=16%  Similarity=0.105  Sum_probs=189.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh-----ccCCCEEEEcCCCChhhHHHHHHHhhCCcEEE
Q psy8850          40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-----KKRGKHIITVQTEHKSVLDSIRKLENDGFRVT  114 (397)
Q Consensus        40 ~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~-----~~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~  114 (397)
                      .+...++++.+++++|.+  .+++++||++|+..++.+++...     .+.+..++.+...|..+.......   |..++
T Consensus        73 ~~~~~~le~~~a~l~G~~--~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---G~~~~  147 (467)
T d2v1pa1          73 SRSYYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQIN---GCTVR  147 (467)
T ss_dssp             CHHHHHHHHHHHHHTCCS--EEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHT---TCEEE
T ss_pred             CchHHHHHHHHHHHHCCC--EEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHc---CCeee
Confidence            356778999999999987  78999999999999999887422     133345666666677776666666   88988


Q ss_pred             EeccCC----------CCCCCHHHHHHHhcC----CceEEEEecccCcccc-ccc---HHHHHHHHHhcCcEEEEecccc
Q psy8850         115 YLKPKN----------NGLITLSQLEEKICS----DTILVSVMLVNNEIGV-IQP---ILEIGELCRSKGVIFHCDAAQA  176 (397)
Q Consensus       115 ~v~~~~----------~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~-~~~---l~~i~~l~~~~gi~livD~a~~  176 (397)
                      .++.+.          .+.+|++++++++.+    .+++++++..++..|. ..|   +++|.++|++||+++|+|+++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~  227 (467)
T d2v1pa1         148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF  227 (467)
T ss_dssp             ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred             ecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            887652          357899999999863    4678888888877654 444   6889999999999999999986


Q ss_pred             cCcccc------ccC-----------cccccEEEecccc-ccCCCCceEEEEecCCCCccccccc--cCCccccccCCCC
Q psy8850         177 VGKIDI------NIQ-----------NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIH--GGGHEYGLRSGTL  236 (397)
Q Consensus       177 ~~~~~~------~~~-----------~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  236 (397)
                      ++....      ...           ...+|++++|.+| +.++. .|++..+++..........  +.........+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~-gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (467)
T d2v1pa1         228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM-GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGL  306 (467)
T ss_dssp             HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS-CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred             hccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC-ceeEEecchhhhhHHHhhcccccccccCcchhhh
Confidence            443210      000           1157999999999 56654 4777777654333211110  0000011112223


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEE----ecCCC-----hHHHH
Q psy8850         237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS----FNFIE-----GESLL  307 (397)
Q Consensus       237 ~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~  307 (397)
                      ....+.+....+...  ...++.++..++.++|.+.|.+ . +..+....    .....+.    ++...     ...+.
T Consensus       307 ~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~-~-~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (467)
T d2v1pa1         307 EGGAMERLAVGLYDG--MNLDWLAYRIAQVQYLVDGLEE-I-GVVCQQAG----GHAAFVDAGKLLPHIPADQFPAQALA  378 (467)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHH-T-TCCEEEEC----SSCEEEEHHHHSTTSCGGGCHHHHHH
T ss_pred             HHHHHHHHHHHhHHh--hhHHHHHHHHHHHHHHHHHHHh-c-CCcccCCC----ccceeecchhhcCCcchhhhhhHHHH
Confidence            333333332333322  2245666677888999999988 3 33333211    1111111    11111     12222


Q ss_pred             HHh-C--CcEec-ccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCCHHHHHHHHHHHHHHHHHHHhc
Q psy8850         308 MAI-K--DIAVS-SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKLREL  376 (397)
Q Consensus       308 ~~l-~--~i~~~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~~~~  376 (397)
                      ..+ .  ||... .|.....       .....+.........+|++++ ...|++|||+++++|++++++.+++
T Consensus       379 ~~ll~~~Gi~~~~~g~~~~~-------~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~~i  445 (467)
T d2v1pa1         379 CELYKVAGIRAVEIGSFLLG-------RDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANI  445 (467)
T ss_dssp             HHHHHHHCEECEEESHHHHC-------BCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGGGC
T ss_pred             HHHHHHcCCeeecccccccc-------cccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            222 2  44322 1111000       000111112223478999976 4569999999999999998765544

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.81  E-value=6.1e-19  Score=166.75  Aligned_cols=318  Identities=17%  Similarity=0.153  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---cCCCEEEEcCCCChhhHHHHHHHhhCCcEEEEec
Q psy8850          41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK  117 (397)
Q Consensus        41 ~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---~~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~  117 (397)
                      +...++++.+++++|.+  .+++++||++|+..++++++....   ..+..++.....|.++.......   |.....++
T Consensus        75 ~~~~~le~~~a~l~g~~--~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~---g~~~~~~~  149 (465)
T d1ax4a_          75 RNYYDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELN---GCKAINIV  149 (465)
T ss_dssp             HHHHHHHHHHHHHHCCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHT---TCEEEECB
T ss_pred             hHHHHHHHHHHHHHCCC--EEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHHHc---CCeeeccc
Confidence            46778999999999986  799999999999999998874321   22344555555455555444444   77776653


Q ss_pred             c----------CCCCCCCHHHHHHHhcC----CceEEEEecccCcccc-ccc---HHHHHHHHHhcCcEEEEecccccCc
Q psy8850         118 P----------KNNGLITLSQLEEKICS----DTILVSVMLVNNEIGV-IQP---ILEIGELCRSKGVIFHCDAAQAVGK  179 (397)
Q Consensus       118 ~----------~~~~~~d~~~l~~~i~~----~~~~v~~~~~~~~tG~-~~~---l~~i~~l~~~~gi~livD~a~~~~~  179 (397)
                      .          +..+.+|+++++++|++    .+.+++++..+|..|. +.|   +++|.++|++||+++|+|+++..+.
T Consensus       150 ~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~  229 (465)
T d1ax4a_         150 TEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCEN  229 (465)
T ss_dssp             CGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHH
T ss_pred             ccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhh
Confidence            2          23578999999999964    4567778877777654 344   6788999999999999999986432


Q ss_pred             ccc------------------ccCcccccEEEeccccccCCCCceEEEEecCCCC--ccccccccCCccccccCCCCchh
Q psy8850         180 IDI------------------NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRT--RIEAQIHGGGHEYGLRSGTLATH  239 (397)
Q Consensus       180 ~~~------------------~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  239 (397)
                      ...                  ++.. ..|++++|.+|.+++.+.|+++.++....  ........+.  .....+.....
T Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  306 (465)
T d1ax4a_         230 AYFIKARDPKYKNATIKEVIFDMYK-YADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPME--GFVTYGGLAGR  306 (465)
T ss_dssp             HHHHHHHCGGGTTCCHHHHHHHHGG-GCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHT--CSTTTTTCCHH
T ss_pred             hcccccccccccccchhhhcccccc-ccceeEeecccCcccccceeEeecchHHHHHhhhccccccc--cCCCcchhhHH
Confidence            110                  1111 36899999999555445688888753211  0110000000  00011122222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEec----CCCh-----HHHHHHh
Q psy8850         240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN----FIEG-----ESLLMAI  310 (397)
Q Consensus       240 ~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~l  310 (397)
                      ...++...+...  ......++..++.++|.+.|++  .++.+..+..   ...+.+...    ....     ......+
T Consensus       307 ~~~a~~~~~~e~--~~~~~~~~~~~~~~~l~~~L~~--~g~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  379 (465)
T d1ax4a_         307 DMAAMVQGLEEG--TEEEYLHYRIGQVKYLGDRLRE--AGIPIQYPTG---GHAVFVDCKKLVPQIPGDQFPAQAVINAL  379 (465)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHH--TTCCBCSSCC---SSEEEEESTTTCTTSCGGGCHHHHHHHHH
T ss_pred             HHHHHhhhhHHh--hhHHHHHHHHHHHHHHHHHHHh--hcCccccCCC---cceeeeehhhhcCCCccccchhHHHHHHH
Confidence            222222222211  1234556666778899999988  4555554432   223223221    1111     2222222


Q ss_pred             -C--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeC-CCCCHHHHHHHHHHHHHHHHHHHhcCcc
Q psy8850         311 -K--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKVKKLRELSPL  379 (397)
Q Consensus       311 -~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~~~~~~~  379 (397)
                       .  |+..........      ......|....-..+.+|++++ ...|++|||+++++|++++++.+++...
T Consensus       380 l~~~GI~~~~~~~~~~------~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~i~gl  446 (465)
T d1ax4a_         380 YLESGVRAVEIGSFLL------GRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLKGL  446 (465)
T ss_dssp             HHHHCEECEEESHHHH------CBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTTCCCE
T ss_pred             HHhcCceecccccccc------ccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhccCc
Confidence             2  544332111000      0000011111122468999865 4469999999999999999988876543

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.80  E-value=1.4e-17  Score=154.82  Aligned_cols=312  Identities=13%  Similarity=0.040  Sum_probs=187.6

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|+|.+++++++......    ...     ......+.+.+.+..+.. +.+.|++||++|++.+++... .+++ 
T Consensus        66 lGh~hp~i~~ai~~~~~~~~~~----~~~-----~~~~~~la~~~~~~~~~~-~~v~f~~sGseA~e~Alk~ar-~~t~-  133 (427)
T d2gsaa_          66 CGHAHPEVIEALKVAMEKGTSF----GAP-----CALENVLAEMVNDAVPSI-EMVRFVNSGTEACMAVLRLMR-AYTG-  133 (427)
T ss_dssp             TCBTCHHHHHHHHHHHTTCSCC----SSC-----CHHHHHHHHHHHHHSTTC-SEEEEESSHHHHHHHHHHHHH-HHHC-
T ss_pred             ccCCcHHHHHHHHHHHHhcCcc----ccc-----hhHHHHHHHHHHhhCCcc-ccccccCCcHHHHHHHHHHHH-HhcC-
Confidence            3456899999999998762211    111     123345666777776533 579999999999999999654 3434 


Q ss_pred             CCEEEEcCCCChhhHHHHHHH-----hhCCc------------EEEEeccCCCCCCCHHHHHHHhcC---CceEEEEecc
Q psy8850          86 GKHIITVQTEHKSVLDSIRKL-----ENDGF------------RVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLV  145 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~-----~~~g~------------~v~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~  145 (397)
                      +.+|+....+|++.......+     ...+.            +...++.     .|++++++++.+   +..+|+++.+
T Consensus       134 r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~le~~~~~~~~~iaavi~Epi  208 (427)
T d2gsaa_         134 RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-----NDLEAVKALFAENPGEIAGVILEPI  208 (427)
T ss_dssp             CCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-----TCHHHHHHHHTTSTTTEEEEEECSS
T ss_pred             CCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc-----chHHHHHHHHHhCCCCeEEEEEcCC
Confidence            467777666665542211100     00011            1222222     389999999975   5789999999


Q ss_pred             cCccccccc----HHHHHHHHHhcCcEEEEecccccCcc----ccccCcccccEEEecccc-ccCCCCceEEEEecCCCC
Q psy8850         146 NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT  216 (397)
Q Consensus       146 ~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~~~~----~~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~~~~~~~  216 (397)
                      +...|.+.|    ++.|.++|++||+++|+|++++....    ..+.....+|+++++  | +.|+...|+++++++..+
T Consensus       209 ~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~~~i~~  286 (427)
T d2gsaa_         209 VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREIMQ  286 (427)
T ss_dssp             BCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEECHHHHT
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHhhh--hccCCCcceeeeeehHHHHH
Confidence            888898887    89999999999999999999973221    112223468999998  8 655445688888877655


Q ss_pred             ccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCc-EEEeCCCCCCCCc
Q psy8850         217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEE-IYINGDMNNRIPH  292 (397)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~  292 (397)
                      .+.+..   ......+. ..+...+++..++++.+.+  ....+++.++.++|.+.|++.   .+. ..+...     ..
T Consensus       287 ~~~~~~---~~~~~~T~-~gnpla~AAala~Le~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~-----gg  355 (427)
T d2gsaa_         287 LVAPAG---PMYQAGTL-SGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQV-----SG  355 (427)
T ss_dssp             TBTTTS---SBCCCCTT-TTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-----TT
T ss_pred             HhcccC---CCcCCCCC-CCCchhhHHHHHhhHHhhh--hhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEccc-----CC
Confidence            554311   11111222 3445556666688887765  334455556666665555431   221 112211     23


Q ss_pred             eEEEEecCC-----------Ch---HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCH
Q psy8850         293 NLNISFNFI-----------EG---ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE  356 (397)
Q Consensus       293 ~~~~~~~~~-----------~~---~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~  356 (397)
                      ++.+.+...           +.   ..+...+.  ||.+.++.                         ..++.++..+|+
T Consensus       356 m~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~-------------------------~~~~~~~l~~Te  410 (427)
T d2gsaa_         356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ-------------------------FEAGFTSLAHTE  410 (427)
T ss_dssp             EEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-------------------------TSCEECCTTCCH
T ss_pred             eEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCC-------------------------CcceeCCCCCCH
Confidence            444443211           11   12222222  66665431                         112224556899


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy8850         357 KEIDFTIKLLKMKVKK  372 (397)
Q Consensus       357 ~~i~~~~~~l~~~~~~  372 (397)
                      +|||++++++++++++
T Consensus       411 ~dId~~l~al~~al~~  426 (427)
T d2gsaa_         411 EDIDATLAAARTVMSA  426 (427)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999865

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.80  E-value=6.6e-17  Score=150.58  Aligned_cols=326  Identities=13%  Similarity=0.108  Sum_probs=190.1

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhccC
Q psy8850           6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR   85 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~~~   85 (397)
                      .+..+|+|.+++.+++.... .... .+.     .+...++.+.|+++..-..+.+.|++|||+|++.+++.. +.++++
T Consensus        55 lGh~~p~v~~ai~~q~~~~~-~~~~-~~~-----~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~A-r~~t~r  126 (431)
T d1zoda1          55 LGHCHPEIVSVIGEYAGKLD-HLFS-EML-----SRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMA-KLVTGK  126 (431)
T ss_dssp             TCBTCHHHHHHHHHHHHHCC-CCCT-TCC-----CHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHH-HHHHTC
T ss_pred             hcCCCHHHHHHHHHHHhhcc-cccc-ccc-----cHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHH-HHhcCC
Confidence            34568999999999998732 1111 111     123456777788877545568999999999999999954 444444


Q ss_pred             CCEEEEcCCCChhhHHHHHHHhhC---------CcEEEEeccCCCC---------CCCHHHHHH---Hh----cCCceEE
Q psy8850          86 GKHIITVQTEHKSVLDSIRKLEND---------GFRVTYLKPKNNG---------LITLSQLEE---KI----CSDTILV  140 (397)
Q Consensus        86 g~~vl~~~~~~~s~~~~~~~~~~~---------g~~v~~v~~~~~~---------~~d~~~l~~---~i----~~~~~~v  140 (397)
                       ++|+.....|++...........         ......++.....         ..+.++++.   .+    .+++.+|
T Consensus       127 -~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAav  205 (431)
T d1zoda1         127 -YEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAF  205 (431)
T ss_dssp             -CEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             -cceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccce
Confidence             56666666666554443332110         0122333322111         112233332   22    3468899


Q ss_pred             EEecccCccccccc----HHHHHHHHHhcCcEEEEeccccc-Cccc----cccCcccccEEEecccc-ccCCCCceEEEE
Q psy8850         141 SVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYI  210 (397)
Q Consensus       141 ~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~~----~~~~~~~~d~~~~s~~K-~~g~~g~g~~~~  210 (397)
                      +++.++...|.+.+    +++|.++|++||+++|.|+++.. |...    .+.....+|+++++  | +.|+...+.+++
T Consensus       206 i~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p~~av~~  283 (431)
T d1zoda1         206 IAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLS--KTLGAGLPLAAIVT  283 (431)
T ss_dssp             EECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSSCEEEEE
T ss_pred             eeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccc--cccccccccceeee
Confidence            99999888888766    89999999999999999999983 3321    11223468999998  9 655445677777


Q ss_pred             ecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcCcEEEeCCC
Q psy8850         211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRL----YNGLMESIEEIYINGDM  286 (397)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~~~~~~~  286 (397)
                      +++........    ......+. +.+..++++..++++.+.+  +...++..++.+++    .+.+.+ .+-+.-+.. 
T Consensus       284 ~~~~~~~~~~~----~~~~~~T~-~g~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~-~~~i~~vrG-  354 (431)
T d1zoda1         284 SAAIEERAHEL----GYLFYTTH-VSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLLDLMER-FDCIGDVRG-  354 (431)
T ss_dssp             CHHHHHHHHHT----TCCCCCTT-TTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHH-CTTEEEEEE-
T ss_pred             eecchhhhhcc----cccccCCC-CCCcchHHHHHHHHHHhhh--hhhhHHHHHHHHHHhhhhhhhhhc-CCCeEEEee-
Confidence            65433222111    00111222 2344555555577887665  23344444444444    444444 343322211 


Q ss_pred             CCCCCceEEEEecC--C-------ChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCC
Q psy8850         287 NNRIPHNLNISFNF--I-------EGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT  355 (397)
Q Consensus       287 ~~~~~~~~~~~~~~--~-------~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~  355 (397)
                         .+.++.+.|..  .       ....+...+.  ++....  ...                 ...++.||++++..+|
T Consensus       355 ---~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~--~~~-----------------~~~~~~i~l~Ppl~it  412 (431)
T d1zoda1         355 ---RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNI--VQL-----------------PGMGGVFRIAPPLTVS  412 (431)
T ss_dssp             ---ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCE--ECC-----------------TTSCCEEEECCCTTCC
T ss_pred             ---cceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCe--eee-----------------cCCCCEEEEECCCCCC
Confidence               13455555521  0       1234444443  443211  000                 0123789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy8850         356 EKEIDFTIKLLKMKVKKL  373 (397)
Q Consensus       356 ~~~i~~~~~~l~~~~~~~  373 (397)
                      ++|||+++++|.++++++
T Consensus       413 ~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         413 EDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999999875

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.2e-18  Score=159.96  Aligned_cols=326  Identities=9%  Similarity=0.057  Sum_probs=200.9

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc---
Q psy8850           7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---   83 (397)
Q Consensus         7 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~---   83 (397)
                      +..+|+|.+++++++.... ....  ..   ...+...++.+.+.+....+.+.+.|++||++|++.+++.......   
T Consensus        58 Gh~~p~i~~Ai~~q~~~~~-~~~~--~~---~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g  131 (429)
T d1s0aa_          58 GYNHPQLNAAMKSQIDAMS-HVMF--GG---ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG  131 (429)
T ss_dssp             CBSCHHHHHHHHHHHHHCS-CCCC--SS---EECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCcHHHHHHHHHHHHhcC-Cccc--CC---ccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeeccc
Confidence            4568999999999987632 1111  11   1123455666777788777767899999999999999986553321   


Q ss_pred             cCCCEEEEcCCCChhh-HHHHHHHhhC----------CcEEEEeccC---CCCCC---CHHHHHHHh---cCCceEEEEe
Q psy8850          84 KRGKHIITVQTEHKSV-LDSIRKLEND----------GFRVTYLKPK---NNGLI---TLSQLEEKI---CSDTILVSVM  143 (397)
Q Consensus        84 ~~g~~vl~~~~~~~s~-~~~~~~~~~~----------g~~v~~v~~~---~~~~~---d~~~l~~~i---~~~~~~v~~~  143 (397)
                      .++.+|+.....|++. ..+.......          .......|..   .....   +++++++.+   .+++.+|+++
T Consensus       132 ~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivE  211 (429)
T d1s0aa_         132 EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIE  211 (429)
T ss_dssp             CCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEEC
T ss_pred             ccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeec
Confidence            2234666666655544 4333322110          0112222222   11222   344444433   3468899999


Q ss_pred             ccc-Cccccccc----HHHHHHHHHhcCcEEEEeccccc-Ccc----ccccCcccccEEEecccc-ccC-CCCceEEEEe
Q psy8850         144 LVN-NEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IYG-PKGIGALYIR  211 (397)
Q Consensus       144 ~~~-~~tG~~~~----l~~i~~l~~~~gi~livD~a~~~-~~~----~~~~~~~~~d~~~~s~~K-~~g-~~g~g~~~~~  211 (397)
                      .+. +..|...|    ++.|.++|++||+++|+|+++.. |..    ........+|+++++  | +.| ...+|+++++
T Consensus       212 Pi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~p~~av~~~  289 (429)
T d1s0aa_         212 PIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSATLTT  289 (429)
T ss_dssp             SSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEEEEEC
T ss_pred             ceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccccc--cccccccccccchhhH
Confidence            765 55555443    78999999999999999999873 222    122223468999998  9 644 3568999998


Q ss_pred             cCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---cEEEeCCCCC
Q psy8850         212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNN  288 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~  288 (397)
                      ++..+.+.+...+ ......+.+ .+...+++..++|+.+.+  ++..++..++.++|++.|++ +.   .+.-+.    
T Consensus       290 ~~i~~~~~~~~~~-~~~~~~T~~-gnp~~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~L~~-l~~~~~v~~vr----  360 (429)
T d1s0aa_         290 REVAETISNGEAG-CFMHGPTFM-GNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAP-ARDAEMVADVR----  360 (429)
T ss_dssp             HHHHHHHHTSTTS-SCSCCCTTT-TCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGG-GGGCTTEEEEE----
T ss_pred             HHHHhccCCCCCc-ceeecCCCC-CCcccchhhhcccccccc--ccccchhhHHHHHHHHHHHH-hccCCceEEEe----
Confidence            7654443221111 011112222 344556666688888765  56778888888888888866 42   222111    


Q ss_pred             CCCceEEEEecC-CChHHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHH
Q psy8850         289 RIPHNLNISFNF-IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL  365 (397)
Q Consensus       289 ~~~~~~~~~~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~  365 (397)
                      ..+.++.+.+.. .....+...+.  |+.+.+.                        ++.||++++..+|++|||+++++
T Consensus       361 g~Gl~~~~e~~~~~~~~~~~~~~~~~Gl~~~~~------------------------g~~i~~~Ppl~it~~eid~~~~~  416 (429)
T d1s0aa_         361 VLGAIGVVETTHPVNMAALQKFFVEQGVWIRPF------------------------GKLIYLMPPYIILPQQLQRLTAA  416 (429)
T ss_dssp             EETTEEEEEESSCBCHHHHHHHHHHTTEECCCB------------------------TTEEEECCCTTCCHHHHHHHHHH
T ss_pred             ecccEEEEEecCcccHHHHHHHHHHCCcEEEec------------------------CCEEEEeCCcCCCHHHHHHHHHH
Confidence            113455666653 34556665554  6666532                        37899999999999999999999


Q ss_pred             HHHHHHHH
Q psy8850         366 LKMKVKKL  373 (397)
Q Consensus       366 l~~~~~~~  373 (397)
                      |.+++++.
T Consensus       417 l~~al~e~  424 (429)
T d1s0aa_         417 VNRAVQDE  424 (429)
T ss_dssp             HHHHTSSG
T ss_pred             HHHHHHhh
Confidence            99987654

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.7e-16  Score=147.19  Aligned_cols=339  Identities=14%  Similarity=0.097  Sum_probs=219.6

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCCc-chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhh---cc
Q psy8850           9 IDPRVVDKMIPYLRVQFGNPASRNH-IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY---KK   84 (397)
Q Consensus         9 ~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~---~~   84 (397)
                      -+|.+.+.+.+++..   ++-. +. ..+...-+.+.+++..|+++.|.+..+.-+..|+|.+-+.++.+.....   ..
T Consensus        77 y~P~v~~~~~~~~Ta---YTPY-QPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~  152 (471)
T d1wyub1          77 YNPKLHEEAARLFAD---LHPY-QDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEG  152 (471)
T ss_dssp             CCCHHHHHHHHTTSS---CCTT-SCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             cCcchhhhHHHHHhc---cCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccc
Confidence            357788887765433   2211 21 2244555788999999999999996666666777766565555433111   11


Q ss_pred             CCCEEEEcCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhcCCceEEEEecccCcccccccHHHHHHHHHh
Q psy8850          85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS  164 (397)
Q Consensus        85 ~g~~vl~~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~l~~i~~l~~~  164 (397)
                      ....+++..+.+..........  .+..++.++.+..+..+.+.+.++...++..+++.++++..+.....+.+.+++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~  230 (471)
T d1wyub1         153 RTRRVVLVPDSAHGSNPATASM--AGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKE  230 (471)
T ss_dssp             TTCCEEEEETTSCTHHHHHHHH--TTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHH
T ss_pred             cccccccCCcccccceeeeeec--ccceeecccccccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHh
Confidence            1233444444444444333322  27888889988888899999999999999999999888776555568999999999


Q ss_pred             cCcEEEEecccccCcc-ccccCcccccEEEecccc-c-----cCCCCceEEEEecCCCCccccccccCCc----------
Q psy8850         165 KGVIFHCDAAQAVGKI-DINIQNYKVDLMSFSAHK-I-----YGPKGIGALYIRRNPRTRIEAQIHGGGH----------  227 (397)
Q Consensus       165 ~gi~livD~a~~~~~~-~~~~~~~~~d~~~~s~~K-~-----~g~~g~g~~~~~~~~~~~~~~~~~~~~~----------  227 (397)
                      .|..+++|.+...... .......+.|+++...++ +     +|++++|++.++++....+.-.+.+.+.          
T Consensus       231 ~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~RE  310 (471)
T d1wyub1         231 AGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRP  310 (471)
T ss_dssp             HTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCT
T ss_pred             ccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCc
Confidence            9999999876542221 111223367888888778 4     3445689999998766655432222111          


Q ss_pred             --cccccCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEeCCCCCCCCceEEEEecC-CCh
Q psy8850         228 --EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEG  303 (397)
Q Consensus       228 --~~~~~~~~~~~~~~~~l~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  303 (397)
                        ..+-..++.+.....+....+.++ .+|++++.+++.+++.++++.|+.  +|+.+..+ . ....-+.+.++. .+.
T Consensus       311 qhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~--~G~~~~~~-~-~ff~EFvv~~~~~~~~  386 (471)
T d1wyub1         311 KSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE--KGYRVPYD-G-PSMHEFVAQPPEGFRA  386 (471)
T ss_dssp             TCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCBCSSC-S-SCCSCEEEBCSTTCCH
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh--cCceeccC-c-ceeeEEeecCCCCCCH
Confidence              112223344332222222233333 568999999999999999999976  78776432 2 223455666553 456


Q ss_pred             HHHHHHhC--CcEecccCccCCCCCChhhHHHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy8850         304 ESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKKLRE  375 (397)
Q Consensus       304 ~~~~~~l~--~i~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  375 (397)
                      .++.+.|.  |+.  ++....|                ...++.+-|+++..+|++|||+++++|++++++.++
T Consensus       387 ~~i~k~L~~~G~~--~~~~~~p----------------~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~~  442 (471)
T d1wyub1         387 LDLAKGLLELGFH--PPTVYFP----------------LIVKEALMVEPTETEAKETLEAFAEAMGALLKKPKE  442 (471)
T ss_dssp             HHHHHHHHHTTCC--CCEESCS----------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHcCCC--CCcccCc----------------CCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhHH
Confidence            77888775  542  2221112                122478899999999999999999999999988764

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.71  E-value=8e-16  Score=143.97  Aligned_cols=320  Identities=15%  Similarity=0.148  Sum_probs=183.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChhHHHHHHHHHhHhhhc
Q psy8850           6 TTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK   83 (397)
Q Consensus         6 ~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~t~a~~~~l~~l~~~~~   83 (397)
                      .+..+|+|.+++.+++....  ..+.. ...   ......+++.+.+.+..+.+.+.++|++||++|++.+++.....+.
T Consensus        67 lGh~~p~v~~ai~~q~~~~~~~~~~~~-~~~---~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~  142 (461)
T d1ohwa_          67 IGYSHPALVKLVQQPQNVSTFINRPAL-GIL---PPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYR  142 (461)
T ss_dssp             SCBTCHHHHHHHHCGGGHHHHHCCCCT-TTS---CBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHhhhhhcccccc-ccc---chHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhh
Confidence            35678999999988765421  11111 000   0111234455555555555556799999999999999986543211


Q ss_pred             ------------------------cCCCEEEEcCCCChhh-HHHHHHHhhC--------CcEEEEeccCC-CC-------
Q psy8850          84 ------------------------KRGKHIITVQTEHKSV-LDSIRKLEND--------GFRVTYLKPKN-NG-------  122 (397)
Q Consensus        84 ------------------------~~g~~vl~~~~~~~s~-~~~~~~~~~~--------g~~v~~v~~~~-~~-------  122 (397)
                                              .++.+|+....+|++. ..+.......        .......+... ..       
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (461)
T d1ohwa_         143 SKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVK  222 (461)
T ss_dssp             HHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHH
T ss_pred             hcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCccccccccccccccccc
Confidence                                    2234677666666554 4333322110        00111111111 00       


Q ss_pred             ------CCCHHHHHHHhc------CCceEEEEecccCccccccc----HHHHHHHHHhcCcEEEEecccc-cCcc----c
Q psy8850         123 ------LITLSQLEEKIC------SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----D  181 (397)
Q Consensus       123 ------~~d~~~l~~~i~------~~~~~v~~~~~~~~tG~~~~----l~~i~~l~~~~gi~livD~a~~-~~~~----~  181 (397)
                            ..+.+++++.+.      +++.+|+++.++...|.+.+    ++.|.++|++||+++|+|+++. +|..    .
T Consensus       223 ~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~  302 (461)
T d1ohwa_         223 ENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWA  302 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSG
T ss_pred             ccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccccccccccccc
Confidence                  112455665542      46789999999998888765    7899999999999999999986 3321    1


Q ss_pred             cccCcc--cccEEEeccccccCCCCceEEEEecCCCCccccccccCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy8850         182 INIQNY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEEL  259 (397)
Q Consensus       182 ~~~~~~--~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~~~~~~~~~  259 (397)
                      ......  .+|+++++  |..+.   |.+.... ......+..+      ..+.+ .+....++..++|+.+.+  +++.
T Consensus       303 ~e~~gi~~~PDiv~~g--K~l~~---g~~~~~~-~~~~~~~~~~------~~T~~-g~p~~~aaa~a~l~~i~~--~~l~  367 (461)
T d1ohwa_         303 HEHWGLDDPADVMTFS--KKMMT---GGFFHKE-EFRPNAPYRI------FNTWL-GDPSKNLLLAEVINIIKR--EDLL  367 (461)
T ss_dssp             GGGGCCSSCCSEEEEC--GGGSS---EEEEECG-GGSCSSTTSS------CCSCS-SCHHHHHHHHHHHHHHHH--TTHH
T ss_pred             ccccccccCchhhhhh--hcccc---ccccccc-cccccccccc------ccccc-cccccchhhcccchhhhh--hhHH
Confidence            111122  38999888  83322   3333332 1111111111      11222 334555666688888765  3455


Q ss_pred             HHHHHHHHHHHHHHhhh---cCc-E-EEeCCCCCCCCceEEEEecCCC-hHHHHHHhC--CcEecccCccCCCCCChhhH
Q psy8850         260 KRILFLQKRLYNGLMES---IEE-I-YINGDMNNRIPHNLNISFNFIE-GESLLMAIK--DIAVSSGSACTSASLEPSYV  331 (397)
Q Consensus       260 ~~~~~~~~~l~~~l~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~  331 (397)
                      ++..++.++|.+.|.+.   .+. + .+.+.     +.++.+.+++.. ..++...+.  |+.+.+.             
T Consensus       368 ~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~-----Gl~~~ie~~~~~~~~~i~~~~~~~Gll~~~~-------------  429 (461)
T d1ohwa_         368 SNAAHAGKVLLTGLLDLQARYPQFISRVRGR-----GTFCSFDTPDESIRNKLISIARNKGVMLGGC-------------  429 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE-----TTEEEEECSSHHHHHHHHHHHHHTTEECEEE-------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceEEeeee-----eEEEEEEcCCHHHHHHHHHHHHHCCeEEeeC-------------
Confidence            66666666666666551   232 1 12221     345566665322 234555544  6666432             


Q ss_pred             HHhhCCCccccCceEEEeeCCCCCHHHHHHHHHHHHHHHHH
Q psy8850         332 LRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKVKK  372 (397)
Q Consensus       332 ~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  372 (397)
                                +.+.|||.++..+|++|+|.++++|.+++++
T Consensus       430 ----------~~~~ir~~PpL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         430 ----------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             ----------TTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ----------CCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence                      1378999999999999999999999999875

>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B subunit 2-like protein PH0440
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.64  E-value=12  Score=29.96  Aligned_cols=108  Identities=16%  Similarity=0.175  Sum_probs=60.3

Q ss_pred             CCCcEEEeCChhHHHHHHHHHhHhhhccCCCEEEE--cCCCChhhHHHHHHHhhCCcEEEEeccCCCCCCCHHHHHHHhc
Q psy8850          57 DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIIT--VQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC  134 (397)
Q Consensus        57 ~~~~i~~~~g~t~a~~~~l~~l~~~~~~~g~~vl~--~~~~~~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~  134 (397)
                      +....++|.|.+.....++.....  .++..+|++  +.|.+.+..-+ ..+...|+.++.++-.        .+-..+.
T Consensus       107 ~~g~~ILT~~~S~tv~~~l~~a~~--~gk~~~V~v~EsrP~~eG~~la-~~L~~~GI~vtlI~Ds--------a~~~~m~  175 (274)
T d1vb5a_         107 DDGDVIITHSFSSTVLEIIRTAKE--RKKRFKVILTESSPDYEGLHLA-RELEFSGIEFEVITDA--------QMGLFCR  175 (274)
T ss_dssp             CTTEEEECCSCCHHHHHHHHHHHH--TTCCEEEEEECCTTTTHHHHHH-HHHHHTTCCEEEECGG--------GHHHHHT
T ss_pred             CCCCEEEEeCchHHHHHHHHHHHH--cCCCeEEEEeCCCcccchHHHH-HHHHHcCCceEEecch--------HHHHHhh
Confidence            445688888777655555554432  134456777  44455554443 4455669998888733        1222233


Q ss_pred             CCceEEEEecccCccccccc---HHHHHHHHHhcCcEEEEeccc
Q psy8850         135 SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQ  175 (397)
Q Consensus       135 ~~~~~v~~~~~~~~tG~~~~---l~~i~~l~~~~gi~livD~a~  175 (397)
                      +-..+++=...-...|.+..   --.++-+|+.|++++++=+..
T Consensus       176 ~~d~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vP~~V~a~~  219 (274)
T d1vb5a_         176 EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAET  219 (274)
T ss_dssp             TCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred             cCCEEEEeeeEEecCCCEEeccchhHHHHHHHHcCCCceEeccc
Confidence            32333332222334554444   356777899999988776543