Psyllid ID: psy8852
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 634 | 2.2.26 [Sep-21-2011] | |||||||
| A6SXE9 | 620 | Chaperone protein HscA ho | yes | N/A | 0.815 | 0.833 | 0.590 | 1e-178 | |
| A4G782 | 620 | Chaperone protein HscA ho | yes | N/A | 0.815 | 0.833 | 0.586 | 1e-177 | |
| Q473J2 | 621 | Chaperone protein HscA ho | yes | N/A | 0.815 | 0.832 | 0.567 | 1e-172 | |
| Q0KCG7 | 621 | Chaperone protein HscA ho | yes | N/A | 0.815 | 0.832 | 0.557 | 1e-171 | |
| B3R475 | 621 | Chaperone protein HscA ho | yes | N/A | 0.815 | 0.832 | 0.559 | 1e-170 | |
| B2U8U5 | 621 | Chaperone protein HscA ho | yes | N/A | 0.815 | 0.832 | 0.551 | 1e-170 | |
| Q8Y0L9 | 621 | Chaperone protein HscA ho | yes | N/A | 0.815 | 0.832 | 0.548 | 1e-170 | |
| Q1LPL1 | 621 | Chaperone protein HscA ho | yes | N/A | 0.815 | 0.832 | 0.551 | 1e-169 | |
| A4SYY9 | 621 | Chaperone protein HscA ho | yes | N/A | 0.815 | 0.832 | 0.559 | 1e-169 | |
| Q5NYT1 | 622 | Chaperone protein HscA ho | yes | N/A | 0.815 | 0.831 | 0.542 | 1e-168 |
| >sp|A6SXE9|HSCA_JANMA Chaperone protein HscA homolog OS=Janthinobacterium sp. (strain Marseille) GN=hscA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 624 bits (1609), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/520 (59%), Positives = 396/520 (76%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQI+EP + ++ +++GID GTTNSLVA VRN+IPEVL D+ G L+PS+V Y+
Sbjct: 1 MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEVLTDEEGRALLPSVVHYM 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN-TNSFPYDFQNKFGMLHIKTIS 233
+G +G KA QN DPKNTI+S+KRF+ R LK+I + PYDF + GM+ +KT++
Sbjct: 61 KNGHAQIGYKALAAQNTDPKNTIASVKRFMGRGLKDIAYVENLPYDFLDTPGMVQLKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+EISA+I TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AAKLAGLNVLR
Sbjct: 121 GVKSPVEISAEILATLRQQAEDALGDELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EG+FAVYDLGGGTFD+SILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD+ L WI++ A L LS +D+++LM+KSRE KELLS ++ ++ L + V++T+
Sbjct: 240 FDHRLLCWIIEQAKLSPLSDEDLSVLMVKSREAKELLSTKAETHIDAALGSGEEVHLTVT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
F +TQHLV +TI + KAL DA+LT+ D++ V++VGG+TRM HI + V FF+ T
Sbjct: 300 AADFVKMTQHLVAKTITPTKKALRDADLTVDDVDGVVMVGGATRMPHIRKAVGEFFQATP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
L +IDPDK V GAA+QAN L+GNR D++LLLDVIPLSLGIET+GGLVEK+I RN+TI
Sbjct: 360 LANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGLVEKVIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
PC+ + EFTTFKD QTA+AI +VQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTAMAIHIVQGERELVSDCRSLARFELRGIPPMAAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + I++KP Y + D+I L+D
Sbjct: 480 DADGLLSVSARELRSGVEASISVKPSYGLADDQIAQMLQD 519
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Janthinobacterium sp. (strain Marseille) (taxid: 375286) |
| >sp|A4G782|HSCA_HERAR Chaperone protein HscA homolog OS=Herminiimonas arsenicoxydans GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 623 bits (1606), Expect = e-177, Method: Compositional matrix adjust.
Identities = 305/520 (58%), Positives = 398/520 (76%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQI+EP + ++ +++GID GTTNSLVA VRN+IPE+L D+ G L+PS+V YL
Sbjct: 1 MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEILTDEEGRSLLPSVVHYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN-TNSFPYDFQNKFGMLHIKTIS 233
+G ++G KA+ QN DPKNTI S+KRF+ R LK+I + PYDF + GM+ +KT++
Sbjct: 61 KNGSAHIGYKAQAAQNTDPKNTIVSVKRFMGRGLKDIAYAENLPYDFLDTPGMVQLKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+E+SA+I TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AAKLAGLNVLR
Sbjct: 121 GVKSPVEVSAEILATLRQQAEDALGDDLVGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EG+FAVYDLGGGTFD+SILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD+ LF WI++ A L LS D ++LM+K+RE KELLS +S ++ L+ + V++T+
Sbjct: 240 FDHRLFCWIIEQAGLAPLSEIDTSVLMVKAREAKELLSSKSETLIDAVLTSGEEVHVTVT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
F +TQHLV +TI + KAL DA L++ D++ V++VGG+TRM HI + V +FF++T
Sbjct: 300 AADFIQMTQHLVTKTITPTKKALRDAGLSVDDVDGVVMVGGATRMPHIRKAVGDFFQSTP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
L +IDPDK V GAA+QAN L+GNR D++LLLDVIPLSLGIET+GGLVEK+I RN+TI
Sbjct: 360 LANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGLVEKVIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
PC+ + EFTTFKD QTA+A+ +VQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTALAVHIVQGERELVTDCRSLAKFELRGIPPMAAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + I++KP Y + D+I L+D
Sbjct: 480 DADGLLSVSARELRSGVEASISVKPSYGLADDQIAQMLQD 519
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Herminiimonas arsenicoxydans (taxid: 204773) |
| >sp|Q473J2|HSCA_CUPPJ Chaperone protein HscA homolog OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 606 bits (1562), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/520 (56%), Positives = 384/520 (73%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + +++GID GTTNSLVA VRN+IPEVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSPAPHQRRLAVGIDLGTTNSLVAAVRNSIPEVLGDERGRALLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSF-PYDFQNKFGMLHIKTIS 233
PD ++G +A+ DPKNTI S+KRF+ R LK++ N PYDF + GM+ IKT++
Sbjct: 61 PDRTTHIGYRAQDEAVRDPKNTIVSVKRFMGRGLKDVAHNEHSPYDFVDAPGMVQIKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+E+SA+I TL++ AE+++ + + GAVITVPAYF++ QRQ TK+AA+LAGL VLR
Sbjct: 121 GVKSPVEVSAEILATLRQRAEDSLGDDLVGAVITVPAYFDEAQRQATKDAARLAGLEVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDISILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NASEGIYAVYDLGGGTFDISILKLTKGVFEVLSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD L WIV+ A L+ LS +D+ +LM+++R KE LS S ++ L +IV++T+
Sbjct: 240 FDQRLLCWIVEQAGLQPLSAQDMRLLMVRARAAKEALSEGDSTVIDAVLDSGEIVHLTLT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+ F TIT HLV +T+ KAL DA +T ++ V+LVGG+TRM I + V +FF
Sbjct: 300 DEIFDTITAHLVQKTLAPVRKALRDAGVTPDEVQGVVLVGGATRMPAIRKAVGDFFGQPP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
LT++DPD+ V GAA+QAN L+GN +++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDRVVALGAAMQANLLAGNHAPGEDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + +T+KP Y + D+I L++
Sbjct: 480 DADGLLSVTARETHSGVESSVTVKPSYGLADDDIARMLQE 519
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) |
| >sp|Q0KCG7|HSCA_CUPNH Chaperone protein HscA homolog OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 602 bits (1552), Expect = e-171, Method: Compositional matrix adjust.
Identities = 290/520 (55%), Positives = 382/520 (73%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + +++GID GTTNSLVA VR++IPEVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSPAPHQRRLAVGIDLGTTNSLVAAVRSSIPEVLGDERGRALLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
PD ++G +A+ DPKNTI S+KRF+ R L+++ N PYDF + GML IKT +
Sbjct: 61 PDRTAHIGYRAQEEAVRDPKNTIVSVKRFMGRGLRDVANIEHSPYDFVDAPGMLQIKTAA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+EISA+I TL++ AE+ + + + GAVITVPAYF++ QRQ TK+AA+LAGL VLR
Sbjct: 121 GVKSPVEISAEILATLRQRAEDTLGDDLVGAVITVPAYFDEAQRQATKDAARLAGLEVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDIS+LK GVF+VL+ GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NASEGIYAVYDLGGGTFDISVLKLTQGVFEVLATGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD L WIV+ A L+ LS +D+ +LM+++R KE LS S ++ L +IV++T+
Sbjct: 240 FDQRLLCWIVEQASLQPLSAQDMRLLMVRARAAKEALSESDSTVIDAVLESGEIVHLTLT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
++ F +T HLV +T+ KAL DA + ++ V+LVGG+TRM I + V ++F T
Sbjct: 300 VEIFDQVTAHLVQKTLAPVRKALRDAGVAPDEVKGVVLVGGATRMPSIRKAVGDYFGQTP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
LT++DPD+ V GAA+QAN L+GN +++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDRVVALGAAMQANLLAGNHAPGEDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + +T+KP Y + D+I L++
Sbjct: 480 DADGLLSVTARETHSGVEASVTVKPSYGLADDDIARMLQE 519
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) |
| >sp|B3R475|HSCA_CUPTR Chaperone protein HscA homolog OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 291/520 (55%), Positives = 381/520 (73%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + +++GID GTTNSLVA VR++IPEVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSPAPHQRRLAVGIDLGTTNSLVAAVRSSIPEVLADERGRALLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
PD +G +A+ DPKNTI S+KRF+ R L+++ N PYDF + GM+ IKT +
Sbjct: 61 PDRTAQIGYRAQDEAVRDPKNTIVSVKRFMGRGLRDVANIEHSPYDFVDAPGMVQIKTAA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+EISA+I TL++ AE+++ + + GAVITVPAYF++ QRQ TK+AA+LAGL VLR
Sbjct: 121 GVKSPVEISAEILATLRQRAEDSLGDDLVGAVITVPAYFDEAQRQATKDAARLAGLEVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDIS+LK GVF+VL+ GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NAAEGIYAVYDLGGGTFDISVLKLTQGVFEVLATGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD L WIV+ A L+ LS +D+ +LM+++R KE LS S ++ L +IV++T+
Sbjct: 240 FDQRLLCWIVEQANLQPLSAQDMRLLMVRARAAKEALSEADSTVIDAVLESGEIVHLTLT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+ F IT HLV +T+ KAL DA + +++ V+LVGG+TRM I + V +FF
Sbjct: 300 DEIFEQITAHLVQKTLAPVRKALRDAGVGPEEVKGVVLVGGATRMPSIRKAVGDFFGQNP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
LT++DPD+ V GAA+QAN L+GN +++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDRVVALGAAMQANLLAGNHAPGEDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + +T+KP Y + D+I L+D
Sbjct: 480 DADGLLSVTARETHSGVEASVTVKPSYGLADDDIARMLQD 519
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546) |
| >sp|B2U8U5|HSCA_RALPJ Chaperone protein HscA homolog OS=Ralstonia pickettii (strain 12J) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/520 (55%), Positives = 382/520 (73%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + + +++GID GTTNSLVA VR+++PEVL D G L+PS+VRYL
Sbjct: 1 MALLQISEPGESPAPHQRRLAVGIDLGTTNSLVASVRSSVPEVLPDDQGRPLLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
P G ++G KA+ DPKNTI S+KRF+ R LK++ + + PYDF + GM+ +KT++
Sbjct: 61 PTGGAHIGYKAQAEAVRDPKNTIISVKRFMGRGLKDVAHIENTPYDFVDAPGMVQLKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+E+SA+I TL++ AE+ + + + GAVITVPAYF+D QRQ TK+AAKLAGLNVLR
Sbjct: 121 GVKSPVEVSAEILATLRQRAEDTLGDELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDIS+LK GVF+V+S GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NGSEGIYAVYDLGGGTFDISVLKLTKGVFEVMSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD + W+V+ A L+ LS +D +L+ K+R KE LS S +++ LS + V++ +
Sbjct: 240 FDQRIVCWVVEQAGLQPLSAEDTRLLLNKARAAKEWLSTADSTEIDAMLSTGETVHLVLT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+ F +T LV +T+ +AL DA +T++D+ V+LVGG+TRM I V F T
Sbjct: 300 AETFAELTATLVQKTLSPVRRALRDAGVTVEDVKGVVLVGGATRMPIIRRAVGQLFGQTP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
LT++DPD+ V GAA+QAN L+GNR +++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDQVVAIGAAMQANLLAGNRAPGEDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E +SG + I +KP Y + D++ L++
Sbjct: 480 DADGLLSVSARETVSGVEASIAVKPSYGLGDDDVARMLQE 519
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Ralstonia pickettii (strain 12J) (taxid: 402626) |
| >sp|Q8Y0L9|HSCA_RALSO Chaperone protein HscA homolog OS=Ralstonia solanacearum (strain GMI1000) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 597 bits (1539), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/520 (54%), Positives = 383/520 (73%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + + +++GID GTTNSLVA VR+++PEVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGESPAPHQRRLAVGIDLGTTNSLVAAVRSSVPEVLPDEQGRPLLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
P G +G KA++ DPKNTI S+KRF+ R LK++ + + PYDF + GM+ +KT++
Sbjct: 61 PAGGAQIGYKAQVEAVRDPKNTIVSVKRFMGRGLKDVAHIENTPYDFVDAPGMVQLKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+E+SA+I TL++ AE+ + + + GAVITVPAYF+D QRQ TK+AA+LAGLNVLR
Sbjct: 121 GVKSPVEVSAEILATLRQRAEDTLGDDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EG++AVYDLGGGTFDIS+LK GVF+V+S GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NAAEGVYAVYDLGGGTFDISVLKLTKGVFEVMSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD + WIV+ A L+ LS +D+ +L+ K+R KE LS S +++ LS + V++ +
Sbjct: 240 FDQRIACWIVEQAGLQPLSAEDMRLLLNKARAAKEWLSGADSTEVDAVLSTGETVHLVLT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+ F +T +LV +T+ +AL DA + + +I V+LVGG+TRM I V+ F
Sbjct: 300 AETFAELTANLVQKTLAPVRRALRDAGVAVDEIQGVVLVGGATRMPVIRRAVAQLFGRAP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
LT++DPD+ V GAA+QA+ L+GNR D++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDQVVAIGAAMQASLLAGNRAAGDDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELAGDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E +SG + I +KP Y + D+I L++
Sbjct: 480 DADGLLSVSARETVSGVEASIAVKPSYGLGDDDIARMLQE 519
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) |
| >sp|Q1LPL1|HSCA_RALME Chaperone protein HscA homolog OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 594 bits (1531), Expect = e-169, Method: Compositional matrix adjust.
Identities = 287/520 (55%), Positives = 382/520 (73%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + +++GID GTTNSLVA VRN+IPEVL D++G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSPAPHQRRLAVGIDLGTTNSLVAAVRNSIPEVLPDEHGRALLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
P+G ++G KA+ DPKNTI S+KRF+ R ++++ N YDF + GM+ +KT +
Sbjct: 61 PNGNAHIGYKAQDEAVRDPKNTIISVKRFMGRGVRDVANIEHSLYDFVDAPGMVQLKTAA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
GIKSP+E+SA+I TL++ AE+++ + + GAVITVPAYF+D QRQ TK+AA+LAGL VLR
Sbjct: 121 GIKSPVEVSAEILATLRQRAEDSLGDELVGAVITVPAYFDDAQRQATKDAAQLAGLEVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDIS+LK GVF+V+S GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NAAEGIYAVYDLGGGTFDISVLKLTKGVFEVMSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD L WIV+ L+ LS +D +LM+++R KE LS S ++ L+ +IV++T+D
Sbjct: 240 FDQRLLCWIVEQVGLQPLSAEDSRLLMVRARAAKEALSSSDSTVIDAVLTSGEIVHLTLD 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
F IT +LV +T+ KAL DA + +D+ V+LVGG+TRM I + V ++F
Sbjct: 300 ADTFIQITANLVQKTLTPVRKALRDAGVGPEDVKGVVLVGGATRMPAIRKAVGDYFGQQP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
LT++DPD+ V GAA+QAN L+GN +++LLLDVIPLSLG+ET+GGLVEKI+ RN+TI
Sbjct: 360 LTNLDPDRVVALGAAMQANLLAGNHAPGEDWLLLDVIPLSLGVETMGGLVEKIVPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + +++KP Y + D+I L++
Sbjct: 480 DADGLLSVSARETGSGVEASVSVKPSYGLADDDIARMLQE 519
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264) |
| >sp|A4SYY9|HSCA_POLSQ Chaperone protein HscA homolog OS=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 594 bits (1531), Expect = e-169, Method: Compositional matrix adjust.
Identities = 291/520 (55%), Positives = 383/520 (73%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP ++ + +++GID GTTNSLVAIV++ +P+VL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGKSLAPHQRRIAVGIDLGTTNSLVAIVQDALPKVLPDEQGRELLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
P+G+ G +A + IDPKNTI S+KRF+ R + ++ N S PYDF ++ GML ++T++
Sbjct: 61 PNGRTQAGFEALESVVIDPKNTILSVKRFMGRGISDVENIESAPYDFVDQPGMLKLRTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G KSPIE+SA+I L+++AE++VN+ I GAVITVPAYF+D QRQ TK+AAKLAG+ VLR
Sbjct: 121 GDKSPIEVSAEILARLRQLAEDSVNDDIVGAVITVPAYFDDAQRQATKDAAKLAGIEVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EG++AVYDLGGGTFDISIL+ GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NATEGVYAVYDLGGGTFDISILRMSKGVFEVLSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD+ L+ W+++ A L LS D L+ + KELLS+ +++ L+D +VN+ I
Sbjct: 240 FDHRLYCWVIEQAKLPPLSIHDHRTLLQACKHAKELLSHNPLARVHETLADGTVVNVGIS 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
Q F ITQ+LV++T++ KAL DA L +DI V++VGGSTRM ++ V F T
Sbjct: 300 QAQLFEITQNLVSKTLVACKKALRDAGLKAEDIKGVVMVGGSTRMPNVQRAVGELFGTKP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
L +++PD+ V GAA+QA+ L+GN+ DD +LLLDVIPLSLGIET+GGLVEKII RNT I
Sbjct: 360 LNNLNPDQVVALGAAMQADLLAGNQSKDDEWLLLDVIPLSLGIETMGGLVEKIIPRNTPI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + +FTTFKD QTA+AI+VVQGE EL ++C+ L FELR IPPM AG ARI+VT+QV
Sbjct: 420 PVARAQDFTTFKDGQTALAIQVVQGERELAQDCRSLGRFELRGIPPMAAGAARIRVTFQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG K I IKP Y + EI L++
Sbjct: 480 DADGLLSVSATEIGSGVKASIDIKPSYGLTDGEITRMLQE 519
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) (taxid: 312153) |
| >sp|Q5NYT1|HSCA_AROAE Chaperone protein HscA homolog OS=Aromatoleum aromaticum (strain EbN1) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 282/520 (54%), Positives = 374/520 (71%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQI+EP + +K +++GID GTTNSLVA VRN I L D+ G ++PSIVRY
Sbjct: 1 MALLQIAEPGQSAEPHKHRLAVGIDLGTTNSLVATVRNGIAVCLADEAGRSMLPSIVRYH 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
DG+I VG+ A DPKNTI S+KRF+ R LK++ + S PYDF + GM+ ++T+
Sbjct: 61 ADGRIEVGQTAAAAHTTDPKNTIMSVKRFMGRGLKDVSHVESTPYDFIDAGGMVRLRTVQ 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+K+P+EISA+I TL AE ++ + GAVITVPAYF+D QRQ TK+AAKLAGLNVLR
Sbjct: 121 GVKTPVEISAEILKTLGARAEASLGGPLTGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AA+AY LD N EG++A+YDLGGGTFD+SILK G+F+VL+ GD+ LGGDD
Sbjct: 181 LLNEPTAAAVAYGLD-NASEGVYAIYDLGGGTFDLSILKLSRGIFEVLATNGDAALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD+ LF WI+ A ++ + D L++K+RE KELL+ + +LS + VN+ +
Sbjct: 240 FDHRLFCWILDKAAIEPPTSDDSRRLLMKAREAKELLTASEEAPIRARLSSDEEVNLVVT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
++F T+TQHL+ +T+ K L DA L +D+ V++VGG+TRM H+ V+ FF
Sbjct: 300 REEFATMTQHLIAKTMAPMRKVLRDAGLGPEDVKGVVMVGGATRMPHVQRAVAEFFGQEP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
LT++DPDK V GAAIQAN L+GNR +D +LLLDVIPLSLG+ET+GGL EK++ RN+T+
Sbjct: 360 LTNLDPDKVVALGAAIQANVLAGNRKDEDEWLLLDVIPLSLGLETMGGLTEKVVPRNSTL 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + EFTTFKD QTA+A VVQGE E+VK+C+ LA FELR IPPM AG ARI+V +QV
Sbjct: 420 PIARAQEFTTFKDGQTAMAFHVVQGEREMVKDCRSLARFELRGIPPMVAGAARIRVAFQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + + +KP Y + DEI S LK+
Sbjct: 480 DADGLLSVSAREMSSGVEASVLVKPSYGLTDDEIASMLKE 519
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Aromatoleum aromaticum (strain EbN1) (taxid: 76114) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 634 | ||||||
| 409406867 | 621 | molecular chaperone protein [Herbaspiril | 0.815 | 0.832 | 0.611 | 0.0 | |
| 300312439 | 621 | molecular chaperone protein [Herbaspiril | 0.815 | 0.832 | 0.603 | 0.0 | |
| 329904115 | 621 | Chaperone protein HscA [Oxalobacteraceae | 0.815 | 0.832 | 0.590 | 0.0 | |
| 398834084 | 611 | Fe-S protein assembly chaperone HscA [He | 0.791 | 0.821 | 0.597 | 1e-180 | |
| 152981263 | 620 | chaperone protein HscA [Janthinobacteriu | 0.815 | 0.833 | 0.590 | 1e-176 | |
| 134095416 | 620 | chaperone protein HscA [Herminiimonas ar | 0.815 | 0.833 | 0.586 | 1e-175 | |
| 427401515 | 629 | Fe-S protein assembly chaperone HscA [Ma | 0.815 | 0.821 | 0.571 | 1e-175 | |
| 399019493 | 611 | Fe-S protein assembly chaperone HscA [He | 0.787 | 0.816 | 0.602 | 1e-175 | |
| 73540765 | 621 | chaperone protein HscA [Ralstonia eutrop | 0.815 | 0.832 | 0.567 | 1e-170 | |
| 339325250 | 621 | chaperone protein HscA [Cupriavidus neca | 0.815 | 0.832 | 0.561 | 1e-170 |
| >gi|409406867|ref|ZP_11255329.1| molecular chaperone protein [Herbaspirillum sp. GW103] gi|386435416|gb|EIJ48241.1| molecular chaperone protein [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/520 (61%), Positives = 400/520 (76%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + +++GID GTTNSLVA VRN+IPEVL D G L+PSIVRYL
Sbjct: 1 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSIVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
P+G ++G KA+ Q IDP+NTI S+KRF+ R LK+I + + PYDFQ++ GM+ IKT++
Sbjct: 61 PNGHAHIGYKAQAAQTIDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+E+SAQI TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AA+LAGLNVLR
Sbjct: 121 GVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EGIFAVYDLGGGTFDISILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NASEGIFAVYDLGGGTFDISILKLTRGVFEVLSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD+ LF WI A L+ LS +D +LM+K+RE+KELLS + V+++ L + V+++I
Sbjct: 240 FDHRLFCWISHEAQLQPLSDEDTRLLMVKAREVKELLSSKEEVQIDAVLKSGEEVHLSIT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
QF ITQHLV +T+ KAL DA+LT++D++ V+LVGG+TRM HI V FFKT
Sbjct: 300 AAQFNEITQHLVAKTMAPVRKALRDASLTVEDVDGVVLVGGATRMPHIRRAVGEFFKTNP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
L++IDPDK V GAA+QAN L+GNR D++LLLDVIPLSLGIET+GGL EK+I RN+TI
Sbjct: 360 LSNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
PC+ + EFTTFKD QTA+AI VVQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLL++ A E SG + IT+KP Y + DEI L++
Sbjct: 480 DADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQE 519
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300312439|ref|YP_003776531.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] gi|300075224|gb|ADJ64623.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/520 (60%), Positives = 397/520 (76%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + +++GID GTTNSLVA VRN+IPEVL D G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
P+G +G KA+ Q DP+NTI S+KRF+ R LK+I + + PYDFQ++ GM+ IKT++
Sbjct: 61 PNGHANIGYKAQAAQTTDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+E+SAQI TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AA+LAGLNVLR
Sbjct: 121 GVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EG+FAVYDLGGGTFDISILK GVF+VL+ GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NSSEGVFAVYDLGGGTFDISILKLTRGVFEVLATGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD+ LF WI A L+ LS +D +LM+K+RE+KELLS + V+++ L + V+++I
Sbjct: 240 FDHRLFCWISHEAQLQPLSDEDTRLLMVKAREVKELLSTKDEVQIDAVLRSGEEVHLSIT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
QF ITQHLV +T+ KAL DA LT++D++ V+LVGG+TRM HI V FFKT
Sbjct: 300 AAQFNEITQHLVAKTMAPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEFFKTNP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
L++IDPDK V GAA+QAN L+GNR D++LLLDVIPLSLGIET+GGL EK+I RN+TI
Sbjct: 360 LSNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
PC+ + EFTTFKD QTA+AI VVQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLL++ A E SG + IT+KP Y + DEI L++
Sbjct: 480 DADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQE 519
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|329904115|ref|ZP_08273681.1| Chaperone protein HscA [Oxalobacteraceae bacterium IMCC9480] gi|327548137|gb|EGF32853.1| Chaperone protein HscA [Oxalobacteraceae bacterium IMCC9480] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/520 (59%), Positives = 397/520 (76%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + ++ +++GID GTTNSLVA VRN+IPEVL D+ G L+PSIVRYL
Sbjct: 1 MALLQISEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEVLTDEDGRALLPSIVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
PDG +G A+ Q DP+NT+SS+KR + R LK+I + + PYDF + GM+ +KT++
Sbjct: 61 PDGHANIGYAAQAMQVADPRNTVSSVKRLMGRGLKDIAHAENLPYDFVDSPGMVQLKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+E+SAQI TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AA LAGLNVLR
Sbjct: 121 GVKSPVEVSAQILATLRQRAEDALGDELVGAVITVPAYFDDAQRQATKDAATLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EGIFAVYDLGGGTFDISILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NASEGIFAVYDLGGGTFDISILKLTKGVFEVLSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD+ L WI+++A L LS +D ++LM+K+RE KELLS ++ ++ L + V++T+
Sbjct: 240 FDHRLLCWIIEHAKLAPLSIEDTSLLMVKAREAKELLSTKAETSIDAALKSGEEVHLTLS 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+F +TQHLV +T+ S KAL DA+LT+ DI+ V+LVGG+TRM + + V +FF++T
Sbjct: 300 ATEFVKLTQHLVAKTLTPSRKALRDASLTVDDIDGVVLVGGATRMPQVRKSVGDFFQSTP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
L +IDPDK V GAAIQAN L+GNR D++LLLDVIPLSLGIET+GGLVEK+I RN+TI
Sbjct: 360 LANIDPDKVVALGAAIQANLLAGNRASGDDWLLLDVIPLSLGIETMGGLVEKVIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
PC+ + EFTTFKD QTA+A+ +VQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTALAVHIVQGERELVTDCRSLARFELRGIPPMAAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + I +KP Y + +++ L+D
Sbjct: 480 DADGLLSVSARELRSGVEASIAVKPSYGLADEQVARMLQD 519
|
Source: Oxalobacteraceae bacterium IMCC9480 Species: Oxalobacteraceae bacterium IMCC9480 Genus: Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398834084|ref|ZP_10592032.1| Fe-S protein assembly chaperone HscA [Herbaspirillum sp. YR522] gi|398220605|gb|EJN07049.1| Fe-S protein assembly chaperone HscA [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 301/504 (59%), Positives = 384/504 (76%), Gaps = 2/504 (0%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+ ++IGID GTTNSLVA VRN+IPEVL D G L+PS+VRYLP+G +G KA+ Q
Sbjct: 7 QRRLAIGIDLGTTNSLVATVRNSIPEVLADDDGRSLLPSVVRYLPNGHANIGYKAQAAQT 66
Query: 191 IDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITL 249
DP+NTI S+KRF+ R LK+I + + PYDFQ+ GM+ IKT++G+KSP+EISAQI TL
Sbjct: 67 SDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDTPGMVQIKTVAGVKSPVEISAQILATL 126
Query: 250 KKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK 309
++ AE+A+ + + GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AAIAY LD
Sbjct: 127 RQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLRLLNEPTAAAIAYGLD- 185
Query: 310 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369
N EGIFAVYDLGGGTFDISILK GVF+VL+ GGDS LGGDDFD+ LF WI + A L+
Sbjct: 186 NGSEGIFAVYDLGGGTFDISILKLARGVFEVLATGGDSALGGDDFDHRLFCWISQQAQLQ 245
Query: 370 KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTI 429
LS +D +LM+K+RE KELLS ++ V ++ L + V++ + +QF +TQHLV +T+
Sbjct: 246 PLSDEDTRLLMVKAREAKELLSSKAQVDIDAVLRSGEEVHLNLSAEQFAEMTQHLVAKTV 305
Query: 430 LLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489
+AL DA L++ DI+ V++VGG+TRM H+ V FF+T L +IDPDK V GAA+
Sbjct: 306 TPVRRALRDAGLSVDDIDGVVMVGGATRMPHVRRAVGEFFQTNPLANIDPDKVVALGAAV 365
Query: 490 QANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQT 549
QAN L+GNR D++LLLDVIPLSLGIET+GGL EK+I RN+TIPC+ + EFTTFKD QT
Sbjct: 366 QANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTIPCARAQEFTTFKDGQT 425
Query: 550 AIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISG 609
A+A+ VVQGE ELV +C+ LA FELR IPPM AG ARI+VTYQVDADGLL++ A E SG
Sbjct: 426 AMAVHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQVDADGLLAVSAREMTSG 485
Query: 610 KKKFITIKPFYNMNLDEIKSNLKD 633
+ I++KP Y + DEI L+D
Sbjct: 486 VEASISVKPSYGLADDEIARMLQD 509
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152981263|ref|YP_001352946.1| chaperone protein HscA [Janthinobacterium sp. Marseille] gi|166220428|sp|A6SXE9.1|HSCA_JANMA RecName: Full=Chaperone protein HscA homolog gi|151281340|gb|ABR89750.1| molecular chaperone HscA (Hsc66) [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 307/520 (59%), Positives = 396/520 (76%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQI+EP + ++ +++GID GTTNSLVA VRN+IPEVL D+ G L+PS+V Y+
Sbjct: 1 MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEVLTDEEGRALLPSVVHYM 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN-TNSFPYDFQNKFGMLHIKTIS 233
+G +G KA QN DPKNTI+S+KRF+ R LK+I + PYDF + GM+ +KT++
Sbjct: 61 KNGHAQIGYKALAAQNTDPKNTIASVKRFMGRGLKDIAYVENLPYDFLDTPGMVQLKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+EISA+I TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AAKLAGLNVLR
Sbjct: 121 GVKSPVEISAEILATLRQQAEDALGDELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EG+FAVYDLGGGTFD+SILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD+ L WI++ A L LS +D+++LM+KSRE KELLS ++ ++ L + V++T+
Sbjct: 240 FDHRLLCWIIEQAKLSPLSDEDLSVLMVKSREAKELLSTKAETHIDAALGSGEEVHLTVT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
F +TQHLV +TI + KAL DA+LT+ D++ V++VGG+TRM HI + V FF+ T
Sbjct: 300 AADFVKMTQHLVAKTITPTKKALRDADLTVDDVDGVVMVGGATRMPHIRKAVGEFFQATP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
L +IDPDK V GAA+QAN L+GNR D++LLLDVIPLSLGIET+GGLVEK+I RN+TI
Sbjct: 360 LANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGLVEKVIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
PC+ + EFTTFKD QTA+AI +VQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTAMAIHIVQGERELVSDCRSLARFELRGIPPMAAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + I++KP Y + D+I L+D
Sbjct: 480 DADGLLSVSARELRSGVEASISVKPSYGLADDQIAQMLQD 519
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134095416|ref|YP_001100491.1| chaperone protein HscA [Herminiimonas arsenicoxydans] gi|166220427|sp|A4G782.1|HSCA_HERAR RecName: Full=Chaperone protein HscA homolog gi|133739319|emb|CAL62369.1| Chaperone protein HscA homolog [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/520 (58%), Positives = 398/520 (76%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQI+EP + ++ +++GID GTTNSLVA VRN+IPE+L D+ G L+PS+V YL
Sbjct: 1 MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEILTDEEGRSLLPSVVHYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN-TNSFPYDFQNKFGMLHIKTIS 233
+G ++G KA+ QN DPKNTI S+KRF+ R LK+I + PYDF + GM+ +KT++
Sbjct: 61 KNGSAHIGYKAQAAQNTDPKNTIVSVKRFMGRGLKDIAYAENLPYDFLDTPGMVQLKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+E+SA+I TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AAKLAGLNVLR
Sbjct: 121 GVKSPVEVSAEILATLRQQAEDALGDDLVGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EG+FAVYDLGGGTFD+SILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD+ LF WI++ A L LS D ++LM+K+RE KELLS +S ++ L+ + V++T+
Sbjct: 240 FDHRLFCWIIEQAGLAPLSEIDTSVLMVKAREAKELLSSKSETLIDAVLTSGEEVHVTVT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
F +TQHLV +TI + KAL DA L++ D++ V++VGG+TRM HI + V +FF++T
Sbjct: 300 AADFIQMTQHLVTKTITPTKKALRDAGLSVDDVDGVVMVGGATRMPHIRKAVGDFFQSTP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
L +IDPDK V GAA+QAN L+GNR D++LLLDVIPLSLGIET+GGLVEK+I RN+TI
Sbjct: 360 LANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGLVEKVIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
PC+ + EFTTFKD QTA+A+ +VQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTALAVHIVQGERELVTDCRSLAKFELRGIPPMAAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + I++KP Y + D+I L+D
Sbjct: 480 DADGLLSVSARELRSGVEASISVKPSYGLADDQIAQMLQD 519
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|427401515|ref|ZP_18892587.1| Fe-S protein assembly chaperone HscA [Massilia timonae CCUG 45783] gi|425719624|gb|EKU82556.1| Fe-S protein assembly chaperone HscA [Massilia timonae CCUG 45783] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 297/520 (57%), Positives = 384/520 (73%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQI+EP + ++ +++GID GTTNSLVA VR+ PEVL D+ G L+PSIVRYL
Sbjct: 1 MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRSGSPEVLSDEEGRSLLPSIVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
P+G +G KA++ Q DPKNTI S+KRF+ R LK+I + + PYDF GM+ + T++
Sbjct: 61 PNGHANIGHKARVHQTTDPKNTIVSVKRFMGRGLKDIAHAENLPYDFVEGEGMVQLNTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+E+SAQI TL++ AE+++ + + GAVITVPAYF+D QRQ TK+AA+LAGLNVLR
Sbjct: 121 GVKSPVEVSAQILATLRQRAEDSLGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LL+EPT+AAIAY LD EG++AVYDLGGGTFDISILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLSEPTAAAIAYGLDHG-KEGVYAVYDLGGGTFDISILKLSKGVFEVLSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD+ LF WI + A L LS D LM+K+R+ KELLS + L +IV +T+
Sbjct: 240 FDHRLFCWITEQAKLAPLSEHDTATLMVKARQAKELLSTNEETTVEAILKSGEIVQVTVT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
F IT+HLV +T+ KA+ DA++T++D++ V++VGG+TRM H+ VS FF+T
Sbjct: 300 AAVFSEITRHLVGKTMNAIRKAMRDASVTVEDVDGVVMVGGATRMPHVRRAVSEFFQTIP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
+IDPD+ V GAAIQAN L+GNR D++LLLDV PLSLGIET+GGLVEKII RN+TI
Sbjct: 360 HANIDPDRVVALGAAIQANLLAGNRAEGDDWLLLDVTPLSLGIETMGGLVEKIIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + EFTTFKD QTA+A+ VVQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTALAVHVVQGERELVSDCRSLARFELRGIPPMAAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + IT+KP Y + D++ L++
Sbjct: 480 DADGLLSVAAREMRSGVEASITVKPSYGLGDDDVARMLQE 519
|
Source: Massilia timonae CCUG 45783 Species: Massilia timonae Genus: Massilia Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399019493|ref|ZP_10721641.1| Fe-S protein assembly chaperone HscA [Herbaspirillum sp. CF444] gi|398098103|gb|EJL88396.1| Fe-S protein assembly chaperone HscA [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 302/501 (60%), Positives = 388/501 (77%), Gaps = 2/501 (0%)
Query: 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 193
+++GID GTTNSLVA VRN+IPEVL D+ G+ L+PS+VRYLP+G +G KA+ Q DP
Sbjct: 10 LAVGIDLGTTNSLVATVRNSIPEVLNDEEGHSLLPSVVRYLPNGHANIGYKAQAAQTTDP 69
Query: 194 KNTISSIKRFIARDLKNIN-TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 252
KNTI S+KRF+ R LK+I + PYDFQ+ GM+ +KT++G+KSP+EISAQI TL++
Sbjct: 70 KNTIVSVKRFMGRGLKDIAYVENLPYDFQDAPGMVQLKTVAGVKSPVEISAQILATLRQT 129
Query: 253 AENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIF 312
AE+A+ + + GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AAIAY LD N
Sbjct: 130 AEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLRLLNEPTAAAIAYGLD-NGS 188
Query: 313 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372
EG FAVYDLGGGTFDISILK GVF+VLS GGDS LGGDDFD LF WI + + L LS
Sbjct: 189 EGTFAVYDLGGGTFDISILKLTKGVFEVLSTGGDSALGGDDFDQRLFCWICEQSQLAPLS 248
Query: 373 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 432
+D IL++K+RE+KELLS ++ +++ L+ + V+++I ++F +TQHLV +TI
Sbjct: 249 DEDTRILLVKAREVKELLSSKAYTQIDAVLNSGEEVHLSITAEEFTALTQHLVGKTITPC 308
Query: 433 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 492
KAL DANL++ D++ V+LVGG+TRM H+ + V FF+TT L +IDPDK V GAA+QAN
Sbjct: 309 RKALRDANLSVDDVDGVVLVGGATRMPHVRKAVGEFFQTTPLANIDPDKVVALGAAVQAN 368
Query: 493 FLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIA 552
L+GNR D++LLLDVIPLSLGIET+GGL EK+I RN+TIPC+ + EFTTFKD QTA+A
Sbjct: 369 LLAGNRAAGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTIPCARAQEFTTFKDGQTAMA 428
Query: 553 IKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKK 612
I+VVQGE ELV +C+ LA FELR IPPM AG ARI+VTYQVDADGLLS+ A E SG +
Sbjct: 429 IQVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQVDADGLLSVSAREMTSGVEA 488
Query: 613 FITIKPFYNMNLDEIKSNLKD 633
IT+KP Y + D++ L++
Sbjct: 489 AITVKPSYGLADDDVARMLQE 509
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|73540765|ref|YP_295285.1| chaperone protein HscA [Ralstonia eutropha JMP134] gi|123732965|sp|Q473J2.1|HSCA_CUPPJ RecName: Full=Chaperone protein HscA homolog gi|72118178|gb|AAZ60441.1| Fe-S protein assembly chaperone HscA [Ralstonia eutropha JMP134] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1562), Expect = e-170, Method: Compositional matrix adjust.
Identities = 295/520 (56%), Positives = 384/520 (73%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + +++GID GTTNSLVA VRN+IPEVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSPAPHQRRLAVGIDLGTTNSLVAAVRNSIPEVLGDERGRALLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSF-PYDFQNKFGMLHIKTIS 233
PD ++G +A+ DPKNTI S+KRF+ R LK++ N PYDF + GM+ IKT++
Sbjct: 61 PDRTTHIGYRAQDEAVRDPKNTIVSVKRFMGRGLKDVAHNEHSPYDFVDAPGMVQIKTVA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+E+SA+I TL++ AE+++ + + GAVITVPAYF++ QRQ TK+AA+LAGL VLR
Sbjct: 121 GVKSPVEVSAEILATLRQRAEDSLGDDLVGAVITVPAYFDEAQRQATKDAARLAGLEVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDISILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NASEGIYAVYDLGGGTFDISILKLTKGVFEVLSTGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD L WIV+ A L+ LS +D+ +LM+++R KE LS S ++ L +IV++T+
Sbjct: 240 FDQRLLCWIVEQAGLQPLSAQDMRLLMVRARAAKEALSEGDSTVIDAVLDSGEIVHLTLT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+ F TIT HLV +T+ KAL DA +T ++ V+LVGG+TRM I + V +FF
Sbjct: 300 DEIFDTITAHLVQKTLAPVRKALRDAGVTPDEVQGVVLVGGATRMPAIRKAVGDFFGQPP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
LT++DPD+ V GAA+QAN L+GN +++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDRVVALGAAMQANLLAGNHAPGEDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + +T+KP Y + D+I L++
Sbjct: 480 DADGLLSVTARETHSGVESSVTVKPSYGLADDDIARMLQE 519
|
Source: Ralstonia eutropha JMP134 Species: Cupriavidus pinatubonensis Genus: Cupriavidus Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|339325250|ref|YP_004684943.1| chaperone protein HscA [Cupriavidus necator N-1] gi|338165407|gb|AEI76462.1| chaperone protein HscA [Cupriavidus necator N-1] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 292/520 (56%), Positives = 381/520 (73%), Gaps = 3/520 (0%)
Query: 116 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + +++GID GTTNSLVA VR++IPEVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSPAPHQRRLAVGIDLGTTNSLVAAVRSSIPEVLGDERGRALLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 233
PD ++G +A+ DPKNTI S+KRF+ R L++I N PYDF + GML IKT +
Sbjct: 61 PDRTTHIGYRAQDEAVRDPKNTIVSVKRFMGRGLRDIANIEHSPYDFVDAPGMLQIKTAA 120
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+KSP+EISA+I TL++ AE+ + + + GAVITVPAYF++ QRQ TK+AA+LAGL VLR
Sbjct: 121 GVKSPVEISAEILATLRQRAEDTLGDDLVGAVITVPAYFDEAQRQATKDAARLAGLEVLR 180
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDIS+LK GVF+V++ GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NASEGIYAVYDLGGGTFDISVLKLTQGVFEVMATGGDSALGGDD 239
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
FD + WIV+ A L+ LS +D+ +LM+++R KE LS S ++ L +IV++ +
Sbjct: 240 FDQRVLCWIVEQAGLQPLSAQDMRLLMVRARAAKEALSEADSTVIDAVLDSGEIVHLALT 299
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+ F IT HLV +T+ KAL DA +T D+ V+LVGG+TRM I + V ++F T
Sbjct: 300 DETFEQITAHLVQKTLAPVRKALRDAGVTPDDVKGVVLVGGATRMPSIRKAVGDYFGQTP 359
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
LT++DPD+ V GAA+QAN L+GN +++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDRVVALGAAMQANLLAGNHAPGEDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DADGLLS+ A E SG + +T+KP Y + D+I L+D
Sbjct: 480 DADGLLSVTARETHSGVEASVTVKPSYGLADDDIARMLQD 519
|
Source: Cupriavidus necator N-1 Species: Cupriavidus necator Genus: Cupriavidus Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 634 | ||||||
| TIGR_CMR|SO_2268 | 620 | SO_2268 "chaperone protein Hsc | 0.812 | 0.830 | 0.498 | 1.5e-122 | |
| UNIPROTKB|P0A6Z1 | 616 | hscA "chaperone, member of Hsp | 0.798 | 0.821 | 0.502 | 8.8e-118 | |
| TIGR_CMR|CPS_1136 | 620 | CPS_1136 "chaperone protein Hs | 0.812 | 0.830 | 0.490 | 1.1e-117 | |
| UNIPROTKB|Q9KTX8 | 616 | hscA "Chaperone protein HscA h | 0.802 | 0.826 | 0.491 | 6.4e-115 | |
| TIGR_CMR|VC_0752 | 616 | VC_0752 "chaperone protein Hsc | 0.802 | 0.826 | 0.491 | 6.4e-115 | |
| POMBASE|SPAC22A12.15c | 663 | bip1 "ER heat shock protein Bi | 0.779 | 0.745 | 0.423 | 3.4e-93 | |
| TIGR_CMR|ECH_0633 | 617 | ECH_0633 "chaperone protein Hs | 0.794 | 0.816 | 0.412 | 7e-93 | |
| ASPGD|ASPL0000007208 | 666 | sgdE [Emericella nidulans (tax | 0.777 | 0.740 | 0.416 | 1e-91 | |
| TAIR|locus:2182783 | 669 | BIP1 [Arabidopsis thaliana (ta | 0.785 | 0.744 | 0.410 | 1e-91 | |
| TAIR|locus:2165715 | 668 | BIP2 [Arabidopsis thaliana (ta | 0.785 | 0.745 | 0.408 | 1e-91 |
| TIGR_CMR|SO_2268 SO_2268 "chaperone protein HscA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
Identities = 260/522 (49%), Positives = 353/522 (67%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQI+EP + ++ +++GID GTTNSLVA VR+ + L D+ G +PSIVRY
Sbjct: 1 MALLQIAEPGQSAAPHQHRLAVGIDLGTTNSLVAAVRSGVTATLPDENGQHSLPSIVRYT 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 231
+G I VG A ++ DPKNTI S+KRF+ R L +I + SFPY F+ ++ G+ T
Sbjct: 61 QEG-IEVGYVAAMSSAQDPKNTIVSVKRFMGRSLTDIQSGEQSFPYQFEASENGLPLFVT 119
Query: 232 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291
G+ +P+++SA+I L + AE + + GAVITVPAYF+D QRQ TK+AA L G+ V
Sbjct: 120 PQGLVNPVQVSAEILRPLIERAEKTLGGELQGAVITVPAYFDDAQRQGTKDAASLLGVKV 179
Query: 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 351
LRLLNEPT+AAIAY LD EG+ A+YDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSKQ-EGVIAIYDLGGGTFDISILRLNRGVFEVLATGGDSALGG 238
Query: 352 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNIT 411
DDFD+ L + +++ L + + L+I++R +KE L+Y S + ++ L+D ++
Sbjct: 239 DDFDHLLQAHMLQVWQLTDIDSQLSRQLLIEARRVKEALTYASDTEASLTLADGSVLKQV 298
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
+ QF + LV +TI + L DA +T ++ ++VGGSTR+ + E V FF
Sbjct: 299 VTKAQFEGLIAALVKKTIASCRRTLRDAGVTADEVLETVMVGGSTRVPLVREQVEAFFGK 358
Query: 472 TLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNT 531
LTSIDPD+ V GAAIQA+ L GN+ + LLLDVIPLSLGIET+GGLVEK++ RNT
Sbjct: 359 APLTSIDPDRVVAIGAAIQADILVGNKP-ESELLLLDVIPLSLGIETMGGLVEKVVSRNT 417
Query: 532 TIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTY 591
TIP + + EFTTFKD QTA+A VVQGE ELV +C+ LA F L+ IPP+ AG A I+VT+
Sbjct: 418 TIPVARAQEFTTFKDGQTAMAFHVVQGERELVDDCRSLARFTLKGIPPLAAGAAHIRVTF 477
Query: 592 QVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
QVDADGLLS+ A EK +G + I +KP + ++ EI + LKD
Sbjct: 478 QVDADGLLSVTAMEKSTGVQSSIQVKPSFGLSDSEIATMLKD 519
|
|
| UNIPROTKB|P0A6Z1 hscA "chaperone, member of Hsp70 protein family" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
Identities = 265/527 (50%), Positives = 342/527 (64%)
Query: 116 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + ++ GID GTTNSLVA VR+ E L D G L+PS+V Y
Sbjct: 1 MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQ 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 231
G VG A+ +D NTISS+KR + R L +I PY FQ ++ G+ I+T
Sbjct: 61 QQGHS-VGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPHLPYQFQASENGLPMIET 119
Query: 232 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291
+G+ +P+ +SA I L A A+ + G VITVPAYF+D QRQ TK+AA+LAGL+V
Sbjct: 120 AAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYFDDAQRQGTKDAARLAGLHV 179
Query: 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 351
LRLLNEPT+AAIAY LD EG+ AVYDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGG 238
Query: 352 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNIT 411
DDFD+ L +I + A + S +R +ELL + K+ + +D VN+
Sbjct: 239 DDFDHLLADYIREQAGIPDRS---------DNRVQRELLDAAIAAKIALSDADSVTVNVA 289
Query: 412 -----IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 466
I +QF + LV RT+L +AL DA + ++ V++VGGSTR+ + E V
Sbjct: 290 GWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVMVGGSTRVPLVRERVG 349
Query: 467 NFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKI 526
FF LTSIDPDK V GAAIQA+ L GN+ D LLLDVIPLSLG+ET+GGLVEK+
Sbjct: 350 EFFGRPPLTSIDPDKVVAIGAAIQADILVGNKP-DSEMLLLDVIPLSLGLETMGGLVEKV 408
Query: 527 IFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRAR 586
I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C+ LA F LR IP +PAG A
Sbjct: 409 IPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 468
Query: 587 IKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
I+VT+QVDADGLLS+ A EK +G + I +KP Y + EI S +KD
Sbjct: 469 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKD 515
|
|
| TIGR_CMR|CPS_1136 CPS_1136 "chaperone protein HscA" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 256/522 (49%), Positives = 345/522 (66%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQI+EP +V ++ ++ GID GTTNSL+A V++ L D G ++PSIV Y
Sbjct: 1 MALLQIAEPGQSTVPHEHRLAAGIDLGTTNSLIASVQSGNASTLSDDQGRDILPSIVSYQ 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQNKFGMLHIKTI 232
G + VG+ A+ D +NTI+S KR I R LK+I + S PY+F I T
Sbjct: 61 A-GNVLVGQTAQALSIEDAQNTITSAKRLIGRSLKDIQSKYPSLPYEFCGDENHPEIMTR 119
Query: 233 SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 292
G +P+++SA+I +L A+ A+ + G VITVPA+F+D QRQ TK+AAKLAG++VL
Sbjct: 120 QGAVNPVQVSAEILKSLNLRAQAALGGELTGVVITVPAHFDDAQRQSTKDAAKLAGVSVL 179
Query: 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGD 352
RLLNEPT+AA+AY LD EG+ AVYDLGGGTFDISIL+ GVF+VL+ GGDS LGGD
Sbjct: 180 RLLNEPTAAAVAYGLDSGQ-EGVIAVYDLGGGTFDISILRLNKGVFEVLATGGDSALGGD 238
Query: 353 DFDYCLFSWIVKNAFL-KKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNIT 411
DFD L ++V+ A L + LS LM ++ KE L+ + V + + L +
Sbjct: 239 DFDVVLVDYLVEQAGLVRPLSPSLERQLMQQACFAKEQLTTKEEVDITISLDSDSDWKTS 298
Query: 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471
+ Q + LVN+T+ + L DA++TI ++ V++VGGSTR+ + V F
Sbjct: 299 LTKAQLNKLISSLVNKTLRACRRTLKDADITIDEVIEVVMVGGSTRVPLVRSEVEKHFNK 358
Query: 472 TLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNT 531
T LTSIDPDK V GAAIQA+ L GN+ D + LLLDV PLSLG+ET+GGLVEK+I RNT
Sbjct: 359 TPLTSIDPDKVVAIGAAIQADVLVGNKP-DSDMLLLDVTPLSLGLETMGGLVEKVIPRNT 417
Query: 532 TIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTY 591
TIP + + EFTTFKD QTA+A+ V+QGE ELV++C+ LA FELR IP M AG A I+VT+
Sbjct: 418 TIPVAKAQEFTTFKDGQTAMAVHVLQGERELVEDCRSLARFELRGIPAMTAGAAHIRVTF 477
Query: 592 QVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+VDADGLLS+ A EK SG + I +KP + ++ ++I +KD
Sbjct: 478 KVDADGLLSVSAMEKSSGVESSIEVKPSFGLDDNQISQMIKD 519
|
|
| UNIPROTKB|Q9KTX8 hscA "Chaperone protein HscA homolog" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 257/523 (49%), Positives = 342/523 (65%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQI+EP S ++ ++ GID GTTNSLVA VR+ L D G ++PS+V Y
Sbjct: 1 MALLQIAEPGQSSAPHQHKLAAGIDLGTTNSLVASVRSGTASTLVDSQGRSILPSVVNYG 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 231
D VG A+ DP NT+ S+KR + R L++IN PY F+ ++ G+ ++T
Sbjct: 61 ADAT-RVGYPAREQAETDPHNTVISVKRLLGRSLQDINQRYPHLPYRFKASEKGLPIVQT 119
Query: 232 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291
G K+PI+ISA I L + A + + G VITVPAYF+D QR TK+AA LAGL+V
Sbjct: 120 AQGDKNPIQISADILKALAERATATLGGELAGVVITVPAYFDDAQRVATKDAAALAGLHV 179
Query: 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 351
LRLLNEPT+AAIAY LD EG+ AVYDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGG 238
Query: 352 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIK-ELLSYQSSVKLNVKLSDKKIVNI 410
DDFD+ + + L L+ + L+ + + K +L Y ++ +LNV L +
Sbjct: 239 DDFDHLIADHLQAQIGLTSLTAEQQRALINAATQAKIDLTEYMTA-ELNV-LGWQG---- 292
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
++ ++ + L+ +T+L +AL DA + ++ V++VGGSTR + E V FF
Sbjct: 293 SLTREELENLIAPLLKKTLLSCRRALKDAGVEADEVLEVVMVGGSTRTPFVREQVGEFFG 352
Query: 471 TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRN 530
T LTSI+PD+ V GAAIQA+ L+GN+ D LLLDVIPLSLGIET+GGLVEKII RN
Sbjct: 353 RTPLTSINPDEVVAIGAAIQADILAGNKP-DAEMLLLDVIPLSLGIETMGGLVEKIIPRN 411
Query: 531 TTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVT 590
TTIP + + EFTTFKD QTA+++ VVQGE E+V +C+ LA F L+ IPPM AG A I+VT
Sbjct: 412 TTIPVARAQEFTTFKDGQTAMSVHVVQGEREMVDDCRSLARFSLKGIPPMAAGAAHIRVT 471
Query: 591 YQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
YQVDADGLLS+ A EK +G + I +KP Y ++ DE+ LKD
Sbjct: 472 YQVDADGLLSVTALEKSTGVQAEIQVKPSYGLSDDEVTQMLKD 514
|
|
| TIGR_CMR|VC_0752 VC_0752 "chaperone protein HscA" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 257/523 (49%), Positives = 342/523 (65%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQI+EP S ++ ++ GID GTTNSLVA VR+ L D G ++PS+V Y
Sbjct: 1 MALLQIAEPGQSSAPHQHKLAAGIDLGTTNSLVASVRSGTASTLVDSQGRSILPSVVNYG 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 231
D VG A+ DP NT+ S+KR + R L++IN PY F+ ++ G+ ++T
Sbjct: 61 ADAT-RVGYPAREQAETDPHNTVISVKRLLGRSLQDINQRYPHLPYRFKASEKGLPIVQT 119
Query: 232 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291
G K+PI+ISA I L + A + + G VITVPAYF+D QR TK+AA LAGL+V
Sbjct: 120 AQGDKNPIQISADILKALAERATATLGGELAGVVITVPAYFDDAQRVATKDAAALAGLHV 179
Query: 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 351
LRLLNEPT+AAIAY LD EG+ AVYDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSRGVFEVLATGGDSALGG 238
Query: 352 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIK-ELLSYQSSVKLNVKLSDKKIVNI 410
DDFD+ + + L L+ + L+ + + K +L Y ++ +LNV L +
Sbjct: 239 DDFDHLIADHLQAQIGLTSLTAEQQRALINAATQAKIDLTEYMTA-ELNV-LGWQG---- 292
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
++ ++ + L+ +T+L +AL DA + ++ V++VGGSTR + E V FF
Sbjct: 293 SLTREELENLIAPLLKKTLLSCRRALKDAGVEADEVLEVVMVGGSTRTPFVREQVGEFFG 352
Query: 471 TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRN 530
T LTSI+PD+ V GAAIQA+ L+GN+ D LLLDVIPLSLGIET+GGLVEKII RN
Sbjct: 353 RTPLTSINPDEVVAIGAAIQADILAGNKP-DAEMLLLDVIPLSLGIETMGGLVEKIIPRN 411
Query: 531 TTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVT 590
TTIP + + EFTTFKD QTA+++ VVQGE E+V +C+ LA F L+ IPPM AG A I+VT
Sbjct: 412 TTIPVARAQEFTTFKDGQTAMSVHVVQGEREMVDDCRSLARFSLKGIPPMAAGAAHIRVT 471
Query: 591 YQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
YQVDADGLLS+ A EK +G + I +KP Y ++ DE+ LKD
Sbjct: 472 YQVDADGLLSVTALEKSTGVQAEIQVKPSYGLSDDEVTQMLKD 514
|
|
| POMBASE|SPAC22A12.15c bip1 "ER heat shock protein BiP" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 217/513 (42%), Positives = 316/513 (61%)
Query: 115 FMALLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
F+ + + DD S ++ IGID GTT S VA+++N E++ + G + PS V +
Sbjct: 17 FLLPMAFASGDDNSTESYGTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFT 76
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIAR--DLKNI--NTNSFPYDFQN-KFGMLHI 229
D ++ VG+ AK +P+NTI IKR I R D K + + SFP+ N K L
Sbjct: 77 EDERL-VGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVE 135
Query: 230 KTISGIK---SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKL 286
+ G K +P EISA I +K+ AE + + AV+TVPAYFND QRQ TK+A +
Sbjct: 136 VNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTI 195
Query: 287 AGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGD 346
AGLNV+R++NEPT+AAIAY LDK E VYDLGGGTFD+S+L NGVF+VL+ GD
Sbjct: 196 AGLNVIRIVNEPTAAAIAYGLDKTDTEKHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGD 255
Query: 347 SNLGGDDFDYCLFSWIVKNAFLKKLSY---KDVNILMIKSREI---KELLSYQSSVKLNV 400
++LGG+DFD + +++ + + +K + KD+ + RE+ K LS Q SV++ +
Sbjct: 256 THLGGEDFDNRVINYLART-YNRKNNVDVTKDLKAMGKLKREVEKAKRTLSSQKSVRIEI 314
Query: 401 K-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMK 459
+ + + + T+ +F I L +T+ + L D+NL +I++++LVGGSTR+
Sbjct: 315 ESFFNGQDFSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKKSEIDDIVLVGGSTRIP 374
Query: 460 HIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETI 519
+ E + +FF I+PD+AV +GAA+QA LSG G DN +LLDVIPL+LGIET
Sbjct: 375 KVQELLESFFGKKASKGINPDEAVAYGAAVQAGVLSGEEG-SDNIVLLDVIPLTLGIETT 433
Query: 520 GGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPP 579
GG++ K+I RNT IP S F+T DNQ + I+V +GE L K+ +L F+LR IPP
Sbjct: 434 GGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTKDNNLLGKFDLRGIPP 493
Query: 580 MPAGRARIKVTYQVDADGLLSIFAYEKISGKKK 612
P G +I+VT++VDA+G+L++ A +K SGK K
Sbjct: 494 APRGVPQIEVTFEVDANGVLTVSAVDK-SGKGK 525
|
|
| TIGR_CMR|ECH_0633 ECH_0633 "chaperone protein HscA" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 219/531 (41%), Positives = 326/531 (61%)
Query: 116 MALLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVL-KDKYGYFLIPSIVRYL 174
M L+ I+EP+ K ++ GID GTTNSL++++ + ++ D+ G FLI S V Y+
Sbjct: 1 MQLVNITEPE---TSEKVLAFGIDLGTTNSLISMIDSEGKIIIFSDEDGKFLISSTVSYI 57
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSF--PYDFQNKF-GMLHIKT 231
+ +I VGKK I S+KR + + +K+I S P+ +K ++I
Sbjct: 58 -NNQIQVGKKYS-------NKAICSVKRLMGKSIKDIKKLSLDLPFHIIDKGDNNIYIDK 109
Query: 232 ISGIK-SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLN 290
G +P+E+SA+I L KI +++ N + VITVPAYF++ R+ TK+AA LA L
Sbjct: 110 QDGTYVTPVEVSAEILKKLCKIVKDSTNLEVKKVVITVPAYFDETARKATKDAAHLANLE 169
Query: 291 VLRLLNEPTSAAIAYKLDKNIFEG-IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNL 349
VLRLLNEPT+AA+AY +K E I+ +YDLGGGTFD+SILK +GVF+VL+ GG++NL
Sbjct: 170 VLRLLNEPTAAALAYGTEKPECENNIYMIYDLGGGTFDVSILKLHHGVFQVLATGGNTNL 229
Query: 350 GGDDFDYCLFSWIVKNAFLKKLSYKD-------VNILMIKSREIKELLSYQSSVKLNVKL 402
GGDD DY L + ++ N + + + D +N L+ ++ KE LS + K+
Sbjct: 230 GGDDIDY-LLAKLIYNKYQQTENVNDTPLNKELLNDLIADAKYAKEYLSEHYTGSFTFKI 288
Query: 403 SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIH 462
DK + + + +I L+N+T+ + + L +I VILVGGST+M I
Sbjct: 289 HDKNF-SCELSRDELESIISDLLNQTLSIVISTINSIELNFSNIEKVILVGGSTKMPIIK 347
Query: 463 EGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGL 522
+ ++N F + +DPDK V GAA+QA++LS N I + +L+D +PLSLGIETIGG+
Sbjct: 348 KMLNNIFHNKVFCDVDPDKIVAVGAALQAHYLS-NPQITNKNVLIDALPLSLGIETIGGI 406
Query: 523 VEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPA 582
VEKII RNT IP S + EFTT+ D Q +I I V QGE E+V++ + LA F+L+ IPP+PA
Sbjct: 407 VEKIIPRNTPIPASATQEFTTYVDGQNSIQIHVCQGEREMVEHNKSLAKFDLKGIPPLPA 466
Query: 583 GRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
G A+I V ++VD DGLL++ A EK +G + I+I ++ EI++N+ D
Sbjct: 467 GTAKIIVEFKVDMDGLLTVSAQEKSTGITQSISINHTCELDQKEIENNIID 517
|
|
| ASPGD|ASPL0000007208 sgdE [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 214/514 (41%), Positives = 311/514 (60%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P+++++ G PS+V + DG+ VG AK ++P+N
Sbjct: 44 IGIDLGTTNSAVAVMEGKTPKIIENAEGARTTPSVVAFAQDGERLVGIAAKRQAVVNPEN 103
Query: 196 TISSIKRFIARDLKNINTN----SFPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T+ + KR I R + PY Q+ G ++ SP +I + +K
Sbjct: 104 TLFATKRLIGRKFTDAEVQRDIKEVPYKIVQHTNGDAWVEARGEKYSPAQIGGFVLGKMK 163
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
+ AEN ++ + AV+TVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY L+K
Sbjct: 164 ETAENYLSKPVKNAVVTVPAYFNDSQRQATKDAGQIAGLNVLRVVNEPTAAALAYGLEKE 223
Query: 311 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370
+ + AVYDLGGGTFDIS+L+ + GVF+V S GD++LGG+DFD L IV+ F K+
Sbjct: 224 A-DRVVAVYDLGGGTFDISVLEIQKGVFEVKSTNGDTHLGGEDFDISLVRHIVQQ-FKKE 281
Query: 371 ----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFFT 419
LS + I I+ K + SS++ + L S K +N+ + Q +
Sbjct: 282 SGLDLSNDRMAIQRIREAAEKAKIELSSSLQTEINLPFITADASGAKHINLKMTRAQLES 341
Query: 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 479
+ + L++RT+ KAL DANL ++ ++ILVGG TRM + E V + F S++P
Sbjct: 342 LVEPLISRTVDPVRKALKDANLQSSEVQDIILVGGMTRMPKVTESVKSLFGREPAKSVNP 401
Query: 480 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 539
D+AV GAAIQ L+G + D LLLDV PLSLGIET+GG+ ++I RNTTIP S
Sbjct: 402 DEAVAIGAAIQGAVLAGE--VTD-VLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 540 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 599
F+T D QTA+ IKV QGE ELVK+ ++L NF+L IPP G +I+VT+ +DAD ++
Sbjct: 459 TFSTAADFQTAVEIKVFQGERELVKDNKLLGNFQLVGIPPAHRGVPQIEVTFDIDADSIV 518
Query: 600 SIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+ A +K + K + ITI ++ EI+S ++D
Sbjct: 519 HVHAKDKSTNKDQSITIASGSGLSDAEIQSMVED 552
|
|
| TAIR|locus:2182783 BIP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 214/521 (41%), Positives = 313/521 (60%)
Query: 115 FMALLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
F L +S + + K V IGID GTT S V + +N E++ + G + PS V +
Sbjct: 18 FGCLFALSSAIEEATKLGSV-IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFT 76
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDL--KNINTNS--FPYDFQNKFGM--LH 228
D + +G+ AK ++P+ T+ +KR I R K + + PY NK G +
Sbjct: 77 -DSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQ 135
Query: 229 IKTISG---IKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285
+K G + SP EISA I +K+ AE + +I AV+TVPAYFND QRQ TK+A
Sbjct: 136 VKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGV 195
Query: 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGG 345
+AGLNV R++NEPT+AAIAY LDK E V+DLGGGTFD+S+L NGVF+VLS G
Sbjct: 196 IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSVLTIDNGVFEVLSTNG 255
Query: 346 DSNLGGDDFDYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKL 398
D++LGG+DFD+ + + +K +KK KD+ N + K R K LS Q V++
Sbjct: 256 DTHLGGEDFDHRVMEYFIK--LIKKKHQKDISKDNKALGKLRRECERAKRALSSQHQVRV 313
Query: 399 NVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTR 457
++ L D + + +F + L +T+ KA+ DA L I+ ++LVGGSTR
Sbjct: 314 EIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTR 373
Query: 458 MKHIHEGVSNFFKTTLLTS-IDPDKAVVFGAAIQANFLSGNRGIDD-NFLLLDVIPLSLG 515
+ + + + +FF+ ++PD+AV +GAA+Q LSG G + + LLLDV PL+LG
Sbjct: 374 IPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLG 433
Query: 516 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELR 575
IET+GG++ K+I RNT IP S FTT++D QT ++I+V +GE L K+C++L F+L
Sbjct: 434 IETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLN 493
Query: 576 DIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITI 616
IPP P G +I+VT++VDA+G+L++ A +K SGK + ITI
Sbjct: 494 GIPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITI 534
|
|
| TAIR|locus:2165715 BIP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 213/521 (40%), Positives = 313/521 (60%)
Query: 115 FMALLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
F L S + + K V IGID GTT S V + +N E++ + G + PS V +
Sbjct: 18 FGCLFAFSTAKEEATKLGSV-IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFT 76
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDL--KNINTNS--FPYDFQNKFGM--LH 228
D + +G+ AK ++P+ T+ +KR I R K + + PY NK G +
Sbjct: 77 -DSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQ 135
Query: 229 IKTISG---IKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285
+K G + SP EISA I +K+ AE + +I AV+TVPAYFND QRQ TK+A
Sbjct: 136 VKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGV 195
Query: 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGG 345
+AGLNV R++NEPT+AAIAY LDK E V+DLGGGTFD+S+L NGVF+VLS G
Sbjct: 196 IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSVLTIDNGVFEVLSTNG 255
Query: 346 DSNLGGDDFDYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKL 398
D++LGG+DFD+ + + +K +KK KD+ N + K R K LS Q V++
Sbjct: 256 DTHLGGEDFDHRIMEYFIK--LIKKKHQKDISKDNKALGKLRRECERAKRALSSQHQVRV 313
Query: 399 NVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTR 457
++ L D ++ + +F + L +T+ KA+ DA L I+ ++LVGGSTR
Sbjct: 314 EIESLFDGVDLSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTR 373
Query: 458 MKHIHEGVSNFFKTTLLTS-IDPDKAVVFGAAIQANFLSGNRGIDD-NFLLLDVIPLSLG 515
+ + + + +FF+ ++PD+AV +GAA+Q LSG G + + LLLDV PL+LG
Sbjct: 374 IPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLG 433
Query: 516 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELR 575
IET+GG++ K+I RNT IP S FTT++D QT ++I+V +GE L K+C++L F+L
Sbjct: 434 IETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLT 493
Query: 576 DIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITI 616
+PP P G +I+VT++VDA+G+L++ A +K SGK + ITI
Sbjct: 494 GVPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITI 534
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2SXE0 | HSCA_BURTA | No assigned EC number | 0.5517 | 0.8154 | 0.8311 | yes | N/A |
| Q63SN5 | HSCA_BURPS | No assigned EC number | 0.5498 | 0.8154 | 0.8311 | yes | N/A |
| A1K724 | HSCA_AZOSB | No assigned EC number | 0.5346 | 0.8154 | 0.8311 | yes | N/A |
| Q1LPL1 | HSCA_RALME | No assigned EC number | 0.5519 | 0.8154 | 0.8325 | yes | N/A |
| A4SYY9 | HSCA_POLSQ | No assigned EC number | 0.5596 | 0.8154 | 0.8325 | yes | N/A |
| A2SI25 | HSCA_METPP | No assigned EC number | 0.4942 | 0.8123 | 0.8333 | yes | N/A |
| Q7WK59 | HSCA_BORBR | No assigned EC number | 0.5115 | 0.8170 | 0.8354 | yes | N/A |
| A1WKG6 | HSCA_VEREI | No assigned EC number | 0.4990 | 0.8107 | 0.8263 | yes | N/A |
| Q7NZ33 | HSCA_CHRVO | No assigned EC number | 0.5211 | 0.8138 | 0.8336 | yes | N/A |
| A9IQZ6 | HSCA_BORPD | No assigned EC number | 0.5125 | 0.8154 | 0.8338 | yes | N/A |
| Q3JQN9 | HSCA_BURP1 | No assigned EC number | 0.5498 | 0.8154 | 0.8311 | yes | N/A |
| B3R475 | HSCA_CUPTR | No assigned EC number | 0.5596 | 0.8154 | 0.8325 | yes | N/A |
| B1YT24 | HSCA_BURA4 | No assigned EC number | 0.5536 | 0.8154 | 0.8311 | yes | N/A |
| B9MIT4 | HSCA_ACIET | No assigned EC number | 0.5009 | 0.8123 | 0.8279 | yes | N/A |
| Q9JS04 | HSCA_NEIMB | No assigned EC number | 0.5143 | 0.8138 | 0.8322 | yes | N/A |
| A1TPY4 | HSCA_ACIAC | No assigned EC number | 0.5 | 0.8123 | 0.8306 | yes | N/A |
| A3NX33 | HSCA_BURP0 | No assigned EC number | 0.5498 | 0.8154 | 0.8311 | yes | N/A |
| B2U8U5 | HSCA_RALPJ | No assigned EC number | 0.5519 | 0.8154 | 0.8325 | yes | N/A |
| A3NBA0 | HSCA_BURP6 | No assigned EC number | 0.5498 | 0.8154 | 0.8311 | yes | N/A |
| Q5NYT1 | HSCA_AROAE | No assigned EC number | 0.5423 | 0.8154 | 0.8311 | yes | N/A |
| Q8Y0L9 | HSCA_RALSO | No assigned EC number | 0.5480 | 0.8154 | 0.8325 | yes | N/A |
| Q7W8U9 | HSCA_BORPA | No assigned EC number | 0.5115 | 0.8170 | 0.8354 | yes | N/A |
| Q3SEX4 | HSCA_THIDA | No assigned EC number | 0.5403 | 0.8138 | 0.8322 | yes | N/A |
| Q1BHT5 | HSCA_BURCA | No assigned EC number | 0.5536 | 0.8154 | 0.8311 | yes | N/A |
| Q7VXG7 | HSCA_BORPE | No assigned EC number | 0.5115 | 0.8170 | 0.8354 | yes | N/A |
| C1D4P9 | HSCA_LARHH | No assigned EC number | 0.5288 | 0.8138 | 0.8336 | yes | N/A |
| Q9JUF4 | HSCA_NEIMA | No assigned EC number | 0.5124 | 0.8138 | 0.8322 | yes | N/A |
| A1V5M2 | HSCA_BURMS | No assigned EC number | 0.5498 | 0.8154 | 0.8311 | yes | N/A |
| B1XTR3 | HSCA_POLNS | No assigned EC number | 0.5480 | 0.8154 | 0.8325 | yes | N/A |
| B5ENY5 | HSCA_ACIF5 | No assigned EC number | 0.4836 | 0.8123 | 0.8293 | yes | N/A |
| A3ML96 | HSCA_BURM7 | No assigned EC number | 0.5498 | 0.8154 | 0.8311 | yes | N/A |
| A2SAS9 | HSCA_BURM9 | No assigned EC number | 0.5498 | 0.8154 | 0.8311 | yes | N/A |
| A9AGU7 | HSCA_BURM1 | No assigned EC number | 0.5574 | 0.8154 | 0.8311 | yes | N/A |
| Q1H365 | HSCA_METFK | No assigned EC number | 0.5394 | 0.8123 | 0.8279 | yes | N/A |
| Q62IZ5 | HSCA_BURMA | No assigned EC number | 0.5498 | 0.8154 | 0.8311 | yes | N/A |
| A4G782 | HSCA_HERAR | No assigned EC number | 0.5865 | 0.8154 | 0.8338 | yes | N/A |
| B4EDS3 | HSCA_BURCJ | No assigned EC number | 0.5536 | 0.8154 | 0.8311 | yes | N/A |
| A0K8P6 | HSCA_BURCH | No assigned EC number | 0.5536 | 0.8154 | 0.8311 | yes | N/A |
| A9BWU9 | HSCA_DELAS | No assigned EC number | 0.5028 | 0.8123 | 0.8279 | yes | N/A |
| B0UVL9 | HSCA_HAES2 | No assigned EC number | 0.5171 | 0.7949 | 0.8181 | yes | N/A |
| Q5F8E8 | HSCA_NEIG1 | No assigned EC number | 0.5124 | 0.8138 | 0.8322 | yes | N/A |
| Q0KCG7 | HSCA_CUPNH | No assigned EC number | 0.5576 | 0.8154 | 0.8325 | yes | N/A |
| A1W7T4 | HSCA_ACISJ | No assigned EC number | 0.4990 | 0.8123 | 0.8279 | yes | N/A |
| Q473J2 | HSCA_CUPPJ | No assigned EC number | 0.5673 | 0.8154 | 0.8325 | yes | N/A |
| A6SXE9 | HSCA_JANMA | No assigned EC number | 0.5903 | 0.8154 | 0.8338 | yes | N/A |
| Q60C59 | HSCA_METCA | No assigned EC number | 0.5261 | 0.8107 | 0.8303 | yes | N/A |
| Q39EU4 | HSCA_BURS3 | No assigned EC number | 0.5517 | 0.8154 | 0.8311 | yes | N/A |
| Q0BDQ8 | HSCA_BURCM | No assigned EC number | 0.5517 | 0.8154 | 0.8311 | yes | N/A |
| Q0I1K8 | HSCA_HAES1 | No assigned EC number | 0.5171 | 0.7949 | 0.8181 | yes | N/A |
| B1JV00 | HSCA_BURCC | No assigned EC number | 0.5536 | 0.8154 | 0.8311 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 634 | |||
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 0.0 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 1e-166 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 1e-162 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 1e-151 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-151 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 1e-149 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 1e-131 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 1e-128 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 1e-125 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-123 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 1e-122 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-120 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-115 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-114 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 1e-109 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 1e-101 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-97 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 3e-93 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 2e-90 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 9e-83 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 3e-69 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 3e-64 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 3e-56 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 3e-49 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 1e-43 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 1e-39 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 2e-39 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 3e-39 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 3e-37 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 6e-34 | |
| PRK03578 | 176 | PRK03578, hscB, co-chaperone HscB; Provisional | 8e-27 | |
| PRK01773 | 173 | PRK01773, hscB, co-chaperone HscB; Provisional | 5e-24 | |
| PRK05014 | 171 | PRK05014, hscB, co-chaperone HscB; Provisional | 4e-23 | |
| COG1076 | 174 | COG1076, DjlA, DnaJ-domain-containing proteins 1 [ | 3e-21 | |
| TIGR00714 | 155 | TIGR00714, hscB, Fe-S protein assembly co-chaperon | 3e-17 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 2e-16 | |
| PRK00294 | 173 | PRK00294, hscB, co-chaperone HscB; Provisional | 4e-16 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 3e-15 | |
| PRK01356 | 166 | PRK01356, hscB, co-chaperone HscB; Provisional | 1e-14 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 5e-09 | |
| pfam00226 | 63 | pfam00226, DnaJ, DnaJ domain | 2e-07 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 7e-07 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 2e-06 | |
| smart00271 | 60 | smart00271, DnaJ, DnaJ molecular chaperone homolog | 2e-06 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 4e-06 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 5e-06 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 6e-06 | |
| cd06257 | 55 | cd06257, DnaJ, DnaJ domain or J-domain | 7e-06 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 3e-05 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 2e-04 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 3e-04 | |
| COG2214 | 237 | COG2214, CbpA, DnaJ-class molecular chaperone [Pos | 0.002 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 0.002 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 0.003 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 755 bits (1953), Expect = 0.0
Identities = 292/523 (55%), Positives = 366/523 (69%), Gaps = 13/523 (2%)
Query: 116 MALLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
MALLQISEP + + + +++GID GTTNSLVA VR+ EVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYL 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 231
DG I VG +A+ DPKNTISS+KRF+ R L +I PY F ++ GM I+T
Sbjct: 61 EDG-IEVGYEARANAAQDPKNTISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRT 119
Query: 232 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291
G+KSP+E+SA+I L++ AE + + GAVITVPAYF+D QRQ TK+AA+LAGLNV
Sbjct: 120 AQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNV 179
Query: 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 351
LRLLNEPT+AAIAY LD EG+ AVYDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGG 238
Query: 352 DDFDYCLFSWIVKNAFLK-KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI 410
DDFD+ L WI++ A L +L +D +L+ +R KE LS SV+++V L
Sbjct: 239 DDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG----- 293
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
I +QF + LV RT+L +AL DA + ++ V++VGGSTR+ + E V FF
Sbjct: 294 EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG 353
Query: 471 TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRN 530
T LTSIDPDK V GAAIQA+ L+GN+ D + LLLDVIPLSLG+ET+GGLVEKII RN
Sbjct: 354 RTPLTSIDPDKVVAIGAAIQADILAGNKP-DSDMLLLDVIPLSLGLETMGGLVEKIIPRN 412
Query: 531 TTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVT 590
TTIP + + EFTTFKD QTA+AI VVQGE ELV +C+ LA FELR IPPM AG ARI+VT
Sbjct: 413 TTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVT 472
Query: 591 YQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+QVDADGLLS+ A EK +G + I +KP Y + DEI LKD
Sbjct: 473 FQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKD 515
|
Length = 616 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 682 bits (1762), Expect = 0.0
Identities = 271/501 (54%), Positives = 356/501 (71%), Gaps = 6/501 (1%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTTNSLVA VR+ +PEVL D G L+PS+VRYL DG + VGK+A DPKN
Sbjct: 2 VGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKN 61
Query: 196 TISSIKRFIARDLKNINTNS-FPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 253
TISS+KR + R +++I T S PY F M+ ++T+ G +P+E+SA+I LK+ A
Sbjct: 62 TISSVKRLMGRSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRA 121
Query: 254 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 313
E ++ + GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK E
Sbjct: 122 EESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKAS-E 180
Query: 314 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK-KLS 372
GI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD+ L WI+K + L+
Sbjct: 181 GIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLN 240
Query: 373 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 432
+D +L+ +R KE L+ SV+++ L K + +F + Q LV +T+ +
Sbjct: 241 PEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFK-GKLTRDEFEALIQPLVQKTLSIC 299
Query: 433 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 492
+AL DA L++++I V+LVGGSTRM + V+ F LT IDPD+ V GAAIQA+
Sbjct: 300 RRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQAD 359
Query: 493 FLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIA 552
L+GNR I ++ LLLDV PLSLGIET+GGLVEKII RNT IP + + EFTT+KD QTA+
Sbjct: 360 LLAGNR-IGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMV 418
Query: 553 IKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKK 612
I VVQGE ELV++C+ LA FELR IPPM AG ARI+VT+QVDADGLL++ A E+ +G ++
Sbjct: 419 IHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQ 478
Query: 613 FITIKPFYNMNLDEIKSNLKD 633
I +KP Y ++ +EI+ LKD
Sbjct: 479 SIQVKPSYGLSDEEIERMLKD 499
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 488 bits (1259), Expect = e-166
Identities = 222/514 (43%), Positives = 312/514 (60%), Gaps = 19/514 (3%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ PEV+ + G PS+V + P + VG+ AK +PKN
Sbjct: 2 IGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKER-LVGQAAKRQAVTNPKN 60
Query: 196 TISSIKRFIARDLKNINTNS----FPYDFQ---NKFGMLHIKTISGIKSPIEISAQIFIT 248
T+ S+KR I R + PY N + ++ + +P +ISA +
Sbjct: 61 TVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQK 120
Query: 249 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 308
LK+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY LD
Sbjct: 121 LKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLD 180
Query: 309 KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 368
K E V+DLGGGTFD+SIL+ +GVF+VL+ GD++LGG+DFD L V+ F
Sbjct: 181 KKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEE-FK 239
Query: 369 KK----LSYKDVNILMIKSREIK---ELLSYQSSVKLNVK--LSDKKIVNITIDMKQFFT 419
KK LS + ++ K EL S Q+ + L ++D K V+ T+ +F
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEE 299
Query: 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 479
+ L RT+ KAL DA L+ +I+ V+LVGGSTR+ + E V FF ++P
Sbjct: 300 LCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNP 359
Query: 480 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 539
D+AV GAA+QA LSG + D LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 DEAVAIGAAVQAGVLSGTFDVKD-VLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQ 418
Query: 540 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 599
F+T DNQTA+ I+V QGE E+ + ++L +FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 419 IFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGIL 478
Query: 600 SIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
++ A +K +GK++ ITI ++ DEI+ +KD
Sbjct: 479 TVSAKDKGTGKEQKITITASSGLSDDEIERMVKD 512
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 476 bits (1226), Expect = e-162
Identities = 224/505 (44%), Positives = 306/505 (60%), Gaps = 25/505 (4%)
Query: 136 IGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
IGID GTTNS+VA++R +P+V+++ G L PS+V + +G++ VG+ AK +P+
Sbjct: 8 IGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPE 67
Query: 195 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 254
NTI SIKR I R N + K +P EISA I LK+ AE
Sbjct: 68 NTIFSIKRKIGR---GSNGLKISVEVDGK-----------KYTPEEISAMILTKLKEDAE 113
Query: 255 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 314
+ ++ AVITVPAYFND QRQ TK+AA++AGLNVLRL+NEPT+AA+AY LDK E
Sbjct: 114 AYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKGK-EK 172
Query: 315 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS-- 372
VYDLGGGTFD+S+L+ +GVF+VL+ GGD++LGGDDFD L ++V K
Sbjct: 173 TVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDL 232
Query: 373 ---YKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRT 428
+ L + + K LS + +N+ + + + +F + L+ RT
Sbjct: 233 RSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERT 292
Query: 429 ILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAA 488
I +AL DA L DI+ VILVGGSTR+ + E V FF SI+PD+AV GAA
Sbjct: 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAA 352
Query: 489 IQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQ 548
IQA LSG + LLLDVIPLSLGIET+GG+ II RNTTIP S EF+T D Q
Sbjct: 353 IQAAVLSGE---VPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQ 409
Query: 549 TAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKIS 608
TA+AI V QGE E+ + + L FEL IPP P G +I+VT+ +DA+G+L++ A + +
Sbjct: 410 TAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGT 469
Query: 609 GKKKFITIKPFYNMNLDEIKSNLKD 633
GK++ ITIK ++ +EI+ ++D
Sbjct: 470 GKEQSITIKASSGLSDEEIERMVED 494
|
Length = 579 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 448 bits (1155), Expect = e-151
Identities = 223/513 (43%), Positives = 309/513 (60%), Gaps = 21/513 (4%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P V+ + G PS+V + +G+ VG+ AK +P+N
Sbjct: 3 IGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPEN 62
Query: 196 TISSIKRFIARDLKNI--NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 253
TI SIKRF+ R + PY G + +K +P EISA I LKK A
Sbjct: 63 TIYSIKRFMGRRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDA 122
Query: 254 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 313
E + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK+ +
Sbjct: 123 EAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKD 182
Query: 314 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK--- 370
V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + W+ F K+
Sbjct: 183 EKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADE-FKKEEGI 241
Query: 371 -LSYKDVNILMIKSREIKEL----LSYQSSVKLN-----VKLSDKKIVNITIDMKQFFTI 420
LS KD + + + +E E LS S ++N S K + +T+ +F +
Sbjct: 242 DLS-KD-KMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEEL 299
Query: 421 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPD 480
T LV RT +AL DA L+ DI+ VILVGGSTR+ + E V +FF S++PD
Sbjct: 300 TADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPD 359
Query: 481 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 540
+ V GAAIQ L G+ + LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 EVVAIGAAIQGGVLKGDVK---DVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQV 416
Query: 541 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 600
F+T DNQ A+ I V+QGE + + + L FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 417 FSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH 476
Query: 601 IFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+ A +K +GK++ ITI ++ +EI+ +K+
Sbjct: 477 VSAKDKGTGKEQSITITASSGLSEEEIERMVKE 509
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 438 bits (1130), Expect = e-151
Identities = 180/362 (49%), Positives = 237/362 (65%), Gaps = 10/362 (2%)
Query: 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 193
++IGID GTTNSLVA V + ++L D+ G L+PS+V Y DG I VG A DP
Sbjct: 1 LAIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHY-GDGGISVGHDALKLAISDP 59
Query: 194 KNTISSIKRFIARDLKNINTNSF--PYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 251
KNTISS+KR + + +++I + P G++ T G +P+E+SA+I LK+
Sbjct: 60 KNTISSVKRLMGKSIEDIKKSFPYLPILEGKNGGIILFHTQQGTVTPVEVSAEILKALKE 119
Query: 252 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 311
AE ++ I GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK
Sbjct: 120 RAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDKKK 179
Query: 312 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL 371
EGI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD L ++K LK L
Sbjct: 180 -EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLLKKYGLKSL 238
Query: 372 -SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 430
S +D L++ +R+ KE LS V++ + D K TI ++F + LV +T+
Sbjct: 239 ISDEDQAELLLIARKAKEALSGAEEVEVRGQ--DFK---CTITREEFEKLIDPLVKKTLN 293
Query: 431 LSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490
+ +AL DA L++KDI VILVGGSTR+ + E VS FF L I+PD+ V GAA+Q
Sbjct: 294 ICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDEVVAIGAALQ 353
Query: 491 AN 492
AN
Sbjct: 354 AN 355
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 444 bits (1144), Expect = e-149
Identities = 227/520 (43%), Positives = 313/520 (60%), Gaps = 35/520 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAK---ITQNID 192
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG+ AK +T +
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT---N 61
Query: 193 PKNTISSIKRFIARDLKNIN--TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIFITL 249
P+NTI SIKR + R + + PY I G K +P EISA I L
Sbjct: 62 PENTIFSIKRLMGRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKL 121
Query: 250 KKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK 309
KK AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 122 KKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 181
Query: 310 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369
E I VYDLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + ++ F K
Sbjct: 182 KGDEKI-LVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADE-FKK 239
Query: 370 K----LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITID 413
+ L KD + + + +E EL S Q + + L S K + I +
Sbjct: 240 ENGIDLR-KDK-MALQRLKEAAEKAKIELSSAQQT---EINLPFITADASGPKHLEIKLT 294
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+F +T+ LV RTI +AL DA L++ DI+ VILVGGSTRM + E V FF
Sbjct: 295 RAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEP 354
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
++PD+ V GAAIQ L+G+ + LLLDV PLSLGIET+GG++ K+I RNTTI
Sbjct: 355 NKGVNPDEVVAIGAAIQGGVLAGDV---KDVLLLDVTPLSLGIETLGGVMTKLIERNTTI 411
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P S F+T DNQ A+ I V+QGE E+ + + L F L IPP P G +I+VT+ +
Sbjct: 412 PTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDI 471
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DA+G++ + A +K +GK++ ITI ++ +EI+ +KD
Sbjct: 472 DANGIVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKD 511
|
Length = 627 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 398 bits (1024), Expect = e-131
Identities = 205/496 (41%), Positives = 295/496 (59%), Gaps = 19/496 (3%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P V+ + G PSIV + G VG+ AK + +N
Sbjct: 5 IGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAEN 64
Query: 196 TISSIKRFIAR--DLKNINTNSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 252
T+ SIKRFI R D + PY + + ++++ +P EISA I LK+
Sbjct: 65 TVYSIKRFIGRRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQD 124
Query: 253 AENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIF 312
AE + + AVITVPAYF D QRQ TK+A +AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 AEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQ 184
Query: 313 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-- 370
E + V+DLGGGTFD+SIL+ +GVF+V + G+++LGGDDFD C+ W+V+N F ++
Sbjct: 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVEN-FQQQEG 243
Query: 371 --LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFFTIT 421
LS + + ++ K + S + ++ L + K + + + +F +T
Sbjct: 244 IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELT 303
Query: 422 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLTSIDPD 480
+ LV TI +AL DA L +DI+ VILVGGSTR+ + E + FF S++PD
Sbjct: 304 KDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPD 363
Query: 481 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 540
+AV GAAIQA L G + LLLDV PLSLGIET+G + KII RNTTIP S S
Sbjct: 364 EAVALGAAIQAGVLGGEV---KDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQV 420
Query: 541 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 600
F+T D QT++ I V+QGE + K+ + L F L IPP P G +I+V++++D +G+L
Sbjct: 421 FSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILK 480
Query: 601 IFAYEKISGKKKFITI 616
+ A ++ +G+++ I I
Sbjct: 481 VSAQDQGTGREQSIRI 496
|
Length = 653 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 389 bits (1002), Expect = e-128
Identities = 223/524 (42%), Positives = 314/524 (59%), Gaps = 41/524 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTTNS+VA++ P V+ + G+ PSIV Y G + VG+ AK I+P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPEN 64
Query: 196 TISSIKRFIARDLKNINTNS--FPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITL 249
T S+KRFI R I+ + Y + +IK SP EISAQ+ L
Sbjct: 65 TFYSVKRFIGRKFSEISEEAKQVSYKVKTD-SNGNIKIECPALNKDFSPEEISAQV---L 120
Query: 250 KKIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+ E+A + + AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+A++AY
Sbjct: 121 RKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYG 180
Query: 307 LDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 366
LDK E I V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + +W++K
Sbjct: 181 LDKKNNETIL-VFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE- 238
Query: 367 FLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSD-----------------KKIVN 409
F KK I + K R+ + L+ +++ K ++LS+ K +
Sbjct: 239 FKKK-----EGIDLSKDRQALQRLT-EAAEKAKIELSNLTQTEINLPFITATQTGPKHIE 292
Query: 410 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469
T+ +F + L+NR + AL DA L DI+ V+LVGGSTR+ I E V
Sbjct: 293 KTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL 352
Query: 470 KTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 529
S++PD+ V GAA+QA L+G + D LLLDV PLSLG+ET+GG++ KII R
Sbjct: 353 GKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKD-ILLLDVTPLSLGVETLGGVMTKIIPR 409
Query: 530 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 589
NTTIP S F+T DNQT + I V+QGE EL K+ + L F L IPP P G +I+V
Sbjct: 410 NTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEV 469
Query: 590 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
T+ +DA+G+LS+ A +K +GK++ ITI+ + DE++ +K+
Sbjct: 470 TFDIDANGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKE 513
|
Length = 621 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 384 bits (988), Expect = e-125
Identities = 199/524 (37%), Positives = 321/524 (61%), Gaps = 41/524 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTTNS+VA++ P V+ + G PS+V + DG++ VG+ A+ ++P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQN 64
Query: 196 TISSIKRFIARDLKNINTNS--FPYDFQ-NKFGMLHIKTISGIK--SPIEISAQIFITLK 250
T ++KRFI R ++ S PY + N+ G + IK + +P E+SA I L+
Sbjct: 65 TFYNLKRFIGRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMI---LR 121
Query: 251 KIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
K+A++A + + GAVITVPAYFND QRQ T++A ++AGL V R+LNEPT+AA+AY L
Sbjct: 122 KLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGL 181
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 367
D++ + + V+DLGGGTFD+S+L+ NGVF+V + GD+ LGG+DFD + W+ F
Sbjct: 182 DRSSSQTVL-VFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLA-EQF 239
Query: 368 LKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------------- 410
L+K I + + R+ + L+ +++ K ++LS + +I
Sbjct: 240 LEK-----EGIDLRRDRQALQRLT-EAAEKAKIELSGVSVTDISLPFITATEDGPKHIET 293
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
+D KQF ++ L++R + +AL DA L+ +DI+ V+LVGGSTRM + + V
Sbjct: 294 RLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP 353
Query: 471 TTLLTSIDPDKAVVFGAAIQANFLSGN-RGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 529
+++PD+ V GAAIQA L+G + + LLLDV PLSLG+ETIGG+++K+I R
Sbjct: 354 REPNQNVNPDEVVAVGAAIQAGILAGELKDL----LLLDVTPLSLGLETIGGVMKKLIPR 409
Query: 530 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 589
NTTIP S F+T ++NQ+++ I V QGE E+ + + L F+L IPP P G +++V
Sbjct: 410 NTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQV 469
Query: 590 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+ +DA+G+L + A ++ +G+++ +TI+ ++ E+ +++
Sbjct: 470 AFDIDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQE 513
|
Length = 668 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 377 bits (970), Expect = e-123
Identities = 212/536 (39%), Positives = 304/536 (56%), Gaps = 61/536 (11%)
Query: 116 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 174
M +++I EP+ K + +++GIDFGTTNSL+AI N +V+K LIP+ + +
Sbjct: 1 MQIIEIREPEQADFKQERQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFT 60
Query: 175 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI----------------NTNSFPY 218
+ I + SIKR + LK I N++
Sbjct: 61 SNNFT-----------IGNNKGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKL 109
Query: 219 DFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQ 278
+F NK + EI+A+IFI LK AE + I AVITVPA+FND R
Sbjct: 110 NFANK-------QLR----IPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARG 158
Query: 279 FTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVF 338
AAK+AG VLRL+ EPT+AA AY L+KN +G + VYDLGGGTFD+SIL + G+F
Sbjct: 159 EVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ-KGCYLVYDLGGGTFDVSILNIQEGIF 217
Query: 339 KVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 398
+V++ GD+ LGG+D D ++ K + + +++ KE L+Y+ S
Sbjct: 218 QVIATNGDNMLGGNDIDV-----VITQYLCNKFDLPNSIDTLQLAKKAKETLTYKDSFNN 272
Query: 399 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRM 458
+ NI+I+ + + LV RTI ++ + L A +I+ VILVGG+TR+
Sbjct: 273 D---------NISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRI 321
Query: 459 KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA-NFLSGNRGIDDNFLLLDVIPLSLGIE 517
I + + FK +L+ IDPDKAVV+GAA+QA N ++ + N LL+DV+PLSLG+E
Sbjct: 322 PLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHT----NSLLIDVVPLSLGME 377
Query: 518 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDI 577
GG+VEKII RNT IP S EFTT+ DNQT I ++QGE E+ +C+ LA FEL+ +
Sbjct: 378 LYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGL 437
Query: 578 PPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
PPM AG R +VT+ +DADG+LS+ AYEKIS I +KP + ++ EI L++
Sbjct: 438 PPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLEN 493
|
Length = 595 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 376 bits (967), Expect = e-122
Identities = 212/514 (41%), Positives = 311/514 (60%), Gaps = 21/514 (4%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTTNS VAI+ + P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 44 VGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPEN 103
Query: 196 TISSIKRFIARDLKNINT----NSFPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T+ + KR I R T PY + G I+ SP +I A + +K
Sbjct: 104 TVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMK 163
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
+ AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL+VLR++NEPT+AA+A+ +DKN
Sbjct: 164 ETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN 223
Query: 311 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370
+ I AVYDLGGGTFDISIL+ GVF+V + G+++LGG+DFD + ++++ F K+
Sbjct: 224 DGKTI-AVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE-FKKQ 281
Query: 371 --LSYKDVNILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITIDMKQFFT 419
+ K + + + RE E LS ++ ++N+ S K + I + +
Sbjct: 282 QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEE 341
Query: 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 479
+T L+ +TI K + DA + ++N+VILVGG TRM + E V F ++P
Sbjct: 342 LTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNP 401
Query: 480 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 539
D+AV GAAIQA L G I D LLLDV PLSLGIET+GG+ ++I RNTTIP S
Sbjct: 402 DEAVAMGAAIQAGVLKGE--IKD-LLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 540 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 599
F+T DNQT + IKV QGE E+ + ++L F+L IPP P G +I+VT+ VDA+G++
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518
Query: 600 SIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+I A +K +GKK+ ITI+ ++ +EI+ +K+
Sbjct: 519 NISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKE 552
|
Length = 663 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 373 bits (958), Expect = e-120
Identities = 205/520 (39%), Positives = 304/520 (58%), Gaps = 33/520 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID GTTNS VA + P ++ + G PS+V Y +G VG+ AK ++P+N
Sbjct: 42 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 101
Query: 196 TISSIKRFIARDLKNINTNS--FPYDF---QNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T S+KRFI R + ++ S Y +N L I + EISAQ+ L
Sbjct: 102 TFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 161
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
A +N+++ AVITVPAYFND QR TK+A ++AGL VLR++NEPT+A++AY +K
Sbjct: 162 DDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK 221
Query: 311 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370
E I V+DLGGGTFD+S+L+ +GVF+VLS GD++LGGDDFD + W+ N
Sbjct: 222 SNETIL-VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF---- 276
Query: 371 LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------------TID 413
KD I ++K ++ + L+ +++ K ++LS +I T+
Sbjct: 277 --KKDEGIDLLKDKQALQRLT-EAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLT 333
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+F + L++R AL DA L+ KDI+ VILVGGSTR+ + E V
Sbjct: 334 RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDP 393
Query: 474 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 533
+++PD+ V GAA+QA L+G + +LLDV PLSLG+ET+GG++ KII RNTT+
Sbjct: 394 NVTVNPDEVVALGAAVQAGVLAGEVS---DIVLLDVTPLSLGLETLGGVMTKIIPRNTTL 450
Query: 534 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593
P S S F+T D QT++ I V+QGE E V++ + L +F L IPP P G +I+V + +
Sbjct: 451 PTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDI 510
Query: 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
DA+G+LS+ A +K +GKK+ ITI + DE++ +++
Sbjct: 511 DANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQE 550
|
Length = 673 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 349 bits (898), Expect = e-115
Identities = 147/368 (39%), Positives = 209/368 (56%), Gaps = 12/368 (3%)
Query: 136 IGIDFGTTNSLVAIVRN-NIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
IGID GTTNS VA V N PE++ + G PS+V + DG++ VG+ AK +P+
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 195 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITLK 250
NT+ KR I R + S G I + SP E+SA I LK
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLK 120
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD-K 309
+ AE + + AVITVPAYFND QR+ TK AA++AGLNV+RL+NEPT+AA+AY LD K
Sbjct: 121 EDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKK 180
Query: 310 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369
+ V+DLGGGTFD+S+++ + GVF+VL+ GGD++LGGDDFD L ++ + K
Sbjct: 181 DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEK 240
Query: 370 -----KLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQH 423
+L + + L + + K LS + + L + + + ++F + +
Sbjct: 241 GGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRP 300
Query: 424 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 483
L+ RTI L + L DA L +DI+ V+LVGGS+R+ + E + F L SIDPD+AV
Sbjct: 301 LLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSIDPDEAV 360
Query: 484 VFGAAIQA 491
GAAI A
Sbjct: 361 ALGAAIYA 368
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 355 bits (911), Expect = e-114
Identities = 200/521 (38%), Positives = 308/521 (59%), Gaps = 35/521 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IG+D GTT S VA + + VL++ G+ PS+V + K+ VG AK +P++
Sbjct: 30 IGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKL-VGLAAKRQAITNPQS 88
Query: 196 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIK-SPIEISAQ 244
T ++KR I R D+KN+ PY + G ++ +G + SP +I A
Sbjct: 89 TFYAVKRLIGRRFEDEHIQKDIKNV-----PYKIVRAGNGDAWVQDGNGKQYSPSQIGAF 143
Query: 245 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 304
+ +K+ AEN + +++ AV+T PAYFND QRQ TK+A +AGLNV+R++NEPT+AA+A
Sbjct: 144 VLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALA 203
Query: 305 YKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364
Y +DK + + AVYDLGGGTFDIS+L+ GVF+V + GD++LGG+DFD L +I++
Sbjct: 204 YGMDKTK-DSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262
Query: 365 NAFLKKLSYKDVN---ILMIKSREIKELLSYQSSVKLNVKLSDKKI---------VNITI 412
+K S D++ + + + RE E + S + +++ I + + I
Sbjct: 263 E--FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHI 320
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
+F ITQ L+ R+I + + DA + +K+IN+V+LVGG TRM + E V FF+
Sbjct: 321 SRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKD 380
Query: 473 LLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTT 532
++PD+AV GAA L RG +LLDV PLSLGIET+GG+ ++I +NTT
Sbjct: 381 PFRGVNPDEAVALGAATLGGVL---RGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTT 437
Query: 533 IPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 592
IP S F+T DNQT + IKV QGE E+ + Q++ F+L IPP P G +I+VT+
Sbjct: 438 IPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFD 497
Query: 593 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+DA+G+ + A +K +GK + ITI ++ ++I+ ++D
Sbjct: 498 IDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRD 538
|
Length = 657 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 342 bits (879), Expect = e-109
Identities = 195/508 (38%), Positives = 294/508 (57%), Gaps = 34/508 (6%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+IGID GTT S V + +N E++ + G PS V + D + +G AK +P+
Sbjct: 6 AIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQVARNPE 64
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFG---MLHIKTISGIKS--PIEISAQI 245
NT+ KR I R + S +P+ M+ + K+ P EIS+ +
Sbjct: 65 NTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMV 124
Query: 246 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
+K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 125 LQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 184
Query: 306 KLDK------NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 359
LDK N+ ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L
Sbjct: 185 GLDKKGDGEKNVL-----IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239
Query: 360 SWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLS--YQSSVKLNVKLSDKKIVNI 410
+ V++ F +K KD++ L + K LS Q++++++ L + N+
Sbjct: 240 EFCVQD-FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEID-SLFEGIDYNV 297
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
TI +F + T+ K L DA + + ++ V+LVGGSTR+ + + +FF
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 471 -TTLLTSIDPDKAVVFGAAIQANFLSGNR-GIDDNFLLLDVIPLSLGIETIGGLVEKIIF 528
SI+PD+AV +GAA+QA L+G + + LLLDV PLSLG+ET GG++ K+I
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 529 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 588
RNTTIP S FTT+ DNQ + I+V +GE + K+ +L F L IPP P G +I+
Sbjct: 418 RNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477
Query: 589 VTYQVDADGLLSIFAYEKISGKKKFITI 616
VT+ +DA+G+L++ A +K +GK ITI
Sbjct: 478 VTFDIDANGILNVSAEDKSTGKSNKITI 505
|
Length = 653 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = e-101
Identities = 157/375 (41%), Positives = 218/375 (58%), Gaps = 19/375 (5%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P V+ + G PS+V + G+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPEN 64
Query: 196 TISSIKRFIAR---DLKNINTNSFPY-DFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 251
TI SIKRF+ R +++ + + + I + +P EISA I LK+
Sbjct: 65 TIFSIKRFMGRKFDEVEEERKVPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQKLKE 124
Query: 252 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 311
AE + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 DAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKG 184
Query: 312 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 370
E I VYDLGGGTFD+SIL+ +GVF+VL+ GD++LGGDDFD + W+V+ F K+
Sbjct: 185 NEKI-LVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEE-FKKEE 242
Query: 371 ---LSYKDVNILM-IK--SREIKELLSYQSSVKLN-----VKLSDKKIVNITIDMKQFFT 419
L KD L +K + + K LS + ++N + K + +T+ +F
Sbjct: 243 GIDLR-KDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEE 301
Query: 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 479
+T+ LV RTI +AL DA L+ DI+ VILVGGSTR+ + E V F ++P
Sbjct: 302 LTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVNP 361
Query: 480 DKAVVFGAAIQANFL 494
D+ V GAAIQ L
Sbjct: 362 DEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = 1e-97
Identities = 138/359 (38%), Positives = 198/359 (55%), Gaps = 24/359 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNSLVA+ ++ ++ + G +L PS+V DG+I VGK A+ P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 196 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 254
T +S KRF+ D K + F E+S+ + +LK+ AE
Sbjct: 61 TAASFKRFMGTDKKYRLGKREF--------------------RAEELSSLVLRSLKEDAE 100
Query: 255 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 314
+ + AVI+VPAYFND QR+ TK A +LAGL V RL+NEPT+AA+AY L E
Sbjct: 101 AYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDKDEET 160
Query: 315 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK--KLS 372
F V+DLGGGTFD+S+L+ +GV +V + GD+ LGG+DF L +K L KL
Sbjct: 161 KFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLKKHGLDFEKLD 220
Query: 373 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 432
++ L+ + K LS Q +++V++ + + T+ ++F I Q L+ R
Sbjct: 221 PSELARLLRAAERAKRALSDQEEAEMSVRIEG-EELEYTLTREEFEEICQPLLERLRQPI 279
Query: 433 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491
+AL DA L DI+ +ILVGG+TRM + + VS F L ++PD+ V GAAIQA
Sbjct: 280 ERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQA 338
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 3e-93
Identities = 156/381 (40%), Positives = 215/381 (56%), Gaps = 30/381 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPEN 64
Query: 196 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIKSPIEISAQI 245
T+ + KR I R D+KN+ PY + G ++ SP +I A +
Sbjct: 65 TLYATKRLIGRRFDDPEVQKDIKNV-----PYKIVKASNGDAWVEAHGKKYSPSQIGAFV 119
Query: 246 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
+ +K+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 306 KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365
LDK + + AVYDLGGGTFDISIL+ + GVF+V S GD+ LGG+DFD L +VK
Sbjct: 180 GLDKKD-DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKE 238
Query: 366 AFLKKLSYKDV---NILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITID 413
KK D+ N+ + + RE E LS +N+ S K +N+ +
Sbjct: 239 --FKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLT 296
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+F ++ L+ RTI KAL DA ++ DI VILVGG TRM + E V F
Sbjct: 297 RAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEP 356
Query: 474 LTSIDPDKAVVFGAAIQANFL 494
++PD+AV GAAIQ L
Sbjct: 357 SKGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 284 bits (728), Expect = 2e-90
Identities = 155/371 (41%), Positives = 209/371 (56%), Gaps = 14/371 (3%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ P ++++ G PSIV + G I VG+ AK + + P+N
Sbjct: 5 IGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTG-ILVGEAAKRQEALHPEN 63
Query: 196 TISSIKRFIARDLKNINTNSFPYDFQNKF-----GMLHIKTISGIKSPIEISAQIFITLK 250
T + KR I R K++ K G I T SP +I++ + LK
Sbjct: 64 TFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLKKLK 123
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
K AE + R+ AVITVPAYFND QRQ TK+A LAGL VLR++NEPT+AA+AY +DK
Sbjct: 124 KTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGIDKR 183
Query: 311 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370
AVYDLGGGTFDISIL ++GVF+V + GD+ LGG+DFD + +I+K F +K
Sbjct: 184 KENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKE-FKRK 242
Query: 371 ----LSYKDVNILMIK--SREIKELLSYQSSVKLNVKLSDK-KIVNITIDMKQFFTITQH 423
L+ I IK + + K LS + + D K + ITI ++F + +
Sbjct: 243 YKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQLRKS 302
Query: 424 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 483
+ RTI + L DA L KDI+ VILVGG TRM +I V F S++PD+AV
Sbjct: 303 ICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKSVNPDEAV 362
Query: 484 VFGAAIQANFL 494
GAAIQ + L
Sbjct: 363 ALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 264 bits (678), Expect = 9e-83
Identities = 152/378 (40%), Positives = 218/378 (57%), Gaps = 30/378 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTT S V + +N E++ + G + PS V + DG+ +G AK +P+N
Sbjct: 4 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFT-DGERLIGDAAKNQATSNPEN 62
Query: 196 TISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIKT-ISGIK---SPIEIS 242
TI +KR I R D+K PY NK G +I+ + G K SP EIS
Sbjct: 63 TIFDVKRLIGRKFDDKEVQKDIKL-----LPYKVVNKDGKPYIEVDVKGEKKTFSPEEIS 117
Query: 243 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 302
A + +K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNV+R++NEPT+AA
Sbjct: 118 AMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAA 177
Query: 303 IAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
IAY LDK E V+DLGGGTFD+S+L NGVF+VL+ GD++LGG+DFD +
Sbjct: 178 IAYGLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHF 237
Query: 363 VKNAFLKKLSYKDV---NILMIK-SREI---KELLSYQSSVKLNVK-LSDKKIVNITIDM 414
+K KK KD+ + K RE+ K LS Q ++ ++ L D + + T+
Sbjct: 238 IK--LFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTR 295
Query: 415 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
+F + L +T+ K L DA+L DI+ ++LVGGSTR+ + + + FF
Sbjct: 296 AKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEP 355
Query: 475 T-SIDPDKAVVFGAAIQA 491
+ I+PD+AV +GAA+QA
Sbjct: 356 SRGINPDEAVAYGAAVQA 373
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 3e-69
Identities = 141/378 (37%), Positives = 209/378 (55%), Gaps = 19/378 (5%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+IGID GTT S V + ++ E++ + G PS V + ++ +G AK ++P
Sbjct: 1 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERL-IGDAAKNQVAMNPT 59
Query: 195 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHI----KTISGIKSPIEISAQIF 246
NT+ KR I R + S +P+ N G I K + P EIS+ +
Sbjct: 60 NTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 307 LDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV-- 363
LDK E ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L + V
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 364 -KNAFLKKLS--YKDVNILMIKSREIKELLS--YQSSVKLNVKLSDKKIVNITIDMKQFF 418
K K +S + + L K LS Q+S++++ L + +I +F
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEID-SLFEGIDFYTSITRARFE 298
Query: 419 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSI 477
+ L T+ K L DA L I++++LVGGSTR+ + + + +FF L SI
Sbjct: 299 ELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 358
Query: 478 DPDKAVVFGAAIQANFLS 495
+PD+AV +GAA+QA LS
Sbjct: 359 NPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 3e-64
Identities = 126/384 (32%), Positives = 199/384 (51%), Gaps = 26/384 (6%)
Query: 136 IGIDFGTTNSLVAIVR--NNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 193
IGID GTT S V + + +++ D+ G IPS+V + P + VG KA +P
Sbjct: 23 IGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGT-VLVGYKAVEQAEHNP 81
Query: 194 KNTISSIKRFIARDL------KNINTNSFPYDFQNKFGMLHIK-TISGIK--SPIEISAQ 244
+NTI KRFI + + F ++ G + K +P EI ++
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSR 141
Query: 245 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 304
+ + L+K+AE + + AVI+VPA F++ QR T AA LAGL VLR++NEPT+AA+A
Sbjct: 142 LILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 305 YKLDKNIFEGIF--AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362
Y L K + +F V DLGGGT D+S+L + G+F ++ G++ LGG DF+ L ++
Sbjct: 202 YGLHKK--QDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYL 259
Query: 363 ---VKNAFLKKLSYK-DVNILMIKSREIKELLSYQSSVKLNVKL----SDKKIV--NITI 412
+ + K K D+ L K L+ S +++ L + IV +
Sbjct: 260 YQKIYEKYGKVPDNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYEL 319
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
+F T+ + L + +L L + +L ++++ ++LVGGSTR+ I + + FF
Sbjct: 320 TRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGKD 379
Query: 473 LLTSIDPDKAVVFGAAIQANFLSG 496
TS+DP+ AVV G AIQA + G
Sbjct: 380 PNTSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 3e-56
Identities = 130/391 (33%), Positives = 201/391 (51%), Gaps = 43/391 (10%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GIDFG NS+VA+ R +V+ ++Y PS+V + + +G+ AK + KN
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQR-LIGEAAKNQAISNFKN 61
Query: 196 TISSIKRFIARDLKN----INTNSFPYDFQ---NKFGMLHIKTISGIK--SPIEISAQIF 246
T+ + KR I R + P+ + + + + K SP ++ A +
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
LK+IAE A+ ++ VI+VP+YF D QR+ +AA++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY- 180
Query: 307 LDKNIFEGIF-------------AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
GI+ A D+G + +SI+ F G KVLS D NLGG D
Sbjct: 181 -------GIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRD 233
Query: 354 FDYCLFSWIVKNAFLKKLSYK-DVNI-------LMIKSREIKELLSYQSSVKLNVK-LSD 404
FD LF K F +K YK DV L+ ++K++LS + LN++ L +
Sbjct: 234 FDEALFEHFAKE-FKEK--YKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLME 290
Query: 405 KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEG 464
K V+ I ++F + L+ R KAL +A LT +DI++V +VGGSTR+ + E
Sbjct: 291 DKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKEL 350
Query: 465 VSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 495
++ F L T+++ D+AV G A+Q LS
Sbjct: 351 IAKVFGKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 3e-49
Identities = 112/375 (29%), Positives = 193/375 (51%), Gaps = 20/375 (5%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+IG+ FG T++ +A+ ++ +V+ + G + P++V + I VG AK + +
Sbjct: 2 AIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVI-VGLAAKQGRIRNAA 60
Query: 195 NTISSIKRFIAR----DLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIF 246
NTI K+ + R K K G + + K SP E++ IF
Sbjct: 61 NTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIF 120
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K+IA++A+ + VITVP YF++ Q+ + AA+ AG NVLR+++EP++AA+AY
Sbjct: 121 KKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYG 180
Query: 307 LDKNIFEG--IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364
+ ++ G VY LGG + D++IL+ +G+++VL+ D NLGG+ F S +
Sbjct: 181 IGQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFT-ETLSQYLA 239
Query: 365 NAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQF 417
N F +K + + + L + K++LS S V+ L + ++ +F
Sbjct: 240 NEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARF 299
Query: 418 FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTS 476
++ L + + K L ANLT DIN V+L GGS+R+ + + + + F + +L S
Sbjct: 300 ESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNS 359
Query: 477 IDPDKAVVFGAAIQA 491
I PD+ + GAA QA
Sbjct: 360 ISPDEVIAIGAAKQA 374
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 1e-43
Identities = 110/389 (28%), Positives = 175/389 (44%), Gaps = 35/389 (8%)
Query: 136 IGIDFGTTNSLVAIVRNNIP-EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 194
+GID G+ VA+V+ +P E++ ++ PS V + +++ G A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLF-GSDASSLAARFPQ 59
Query: 195 NTISSIKRFIARDLKNIN----TNSFPYDF---QNKFGMLHIKTISGIK-SPIEISAQIF 246
+K + + + + + P + G + K G + S E+ A I
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 247 ITLKKIAENAVNNR-IFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
KK+AE + VITVP YF QRQ +AA+LAGLNVL L+N+ T+AA+ Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 306 KLDKNIFEG---IFAVYDLGGGTFDISILKFKN----------GVFKVLSVGGDSNLGGD 352
LD+ YD+G G+ ++++F +VL VG D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 353 DFDYCLFSWIVKNAFLKKLSYKDVNI--------LMIKSREIKELLSYQSSVKLNVK-LS 403
+FD L + F +K K L+ ++ KE+LS S ++++ L
Sbjct: 240 EFDLRLAD-HLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLY 298
Query: 404 DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHE 463
D I +F + L R + KAL A LT+KDI++V L+GG+TR+ + E
Sbjct: 299 DDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQE 358
Query: 464 GVSNFFKT-TLLTSIDPDKAVVFGAAIQA 491
+S L ++ D+A GAA A
Sbjct: 359 ELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-39
Identities = 105/390 (26%), Positives = 180/390 (46%), Gaps = 39/390 (10%)
Query: 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI-DP 193
IGI+FG T S +A + +V+ ++ G IPS + Y + Y G +AK Q I +
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYH-GEQEYHGNQAK-AQLIRNA 59
Query: 194 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----------SPIEISA 243
KNTI++ + + + I+ ++ ++ + K + E++
Sbjct: 60 KNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTV 119
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ LK+ AE+ + ++ GAV++VP +F+D Q + AA+ AGL VL+L+ EP +A +
Sbjct: 120 RFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALL 179
Query: 304 AYKLDKN----IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 359
AY + + V D GG D+S++ + G++ +L+ D LGGD D L
Sbjct: 180 AYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALV 239
Query: 360 SWIVKNAFLKKLSYKDVNI---------LMIKSREIKELLSYQSSVKLNVK-LSDKKIVN 409
K F KK K + L +S K+ LS +S +V+ L++ +
Sbjct: 240 KHFAKE-FTKK--TK-TDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFH 295
Query: 410 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469
+I+ +F + + + + A+ A L DI+ V+LVGG+ + +S F
Sbjct: 296 SSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLF 355
Query: 470 --KTTLLTSI------DPDKAVVFGAAIQA 491
TT+ I DP + V G AIQA
Sbjct: 356 PETTTITAPITVSKALDPSELVARGCAIQA 385
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-39
Identities = 106/382 (27%), Positives = 185/382 (48%), Gaps = 23/382 (6%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+G D G + +A+ R E + +++ PS++ + + +G AK Q N
Sbjct: 3 VGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHANN 61
Query: 196 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 246
T+S+ KRF R + + YD K G + +K + + S +I+A +
Sbjct: 62 TVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLL 121
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
LK+ AEN + + VI+VP++F D +R+ +AA++ GLN LRL+N+ T+ A+ Y
Sbjct: 122 TKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYG 181
Query: 307 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL-- 358
+ K I D+G F +S F G KVL D LGG +FD L
Sbjct: 182 IYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 241
Query: 359 -FSWIVKNAFLKKLSYKDVNILMI--KSREIKELLSYQSS-VKLNVK-LSDKKIVNITID 413
F K + K +L + + ++K+L+S S+ + LN++ + K V+ ++
Sbjct: 242 HFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMN 301
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
QF + L+ R + L +L ++D++ V +VGG+TR+ + E ++ FF +
Sbjct: 302 RSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDV 361
Query: 474 LTSIDPDKAVVFGAAIQANFLS 495
T+++ D+AV G A+Q LS
Sbjct: 362 STTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 3e-39
Identities = 96/377 (25%), Positives = 185/377 (49%), Gaps = 22/377 (5%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 59
Query: 196 TISSIKRFIARDLKNIN--------TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIF 246
T++++KR I D + + T+ K G S +++A
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
+K + I I VP ++ + QR +AA++AGLN +R++N+ T+A ++Y
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 307 LDK-NIFEG-----IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 360
+ K ++ EG I A D+G ++ SI+ FK G KVL D + GG DFD +
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITE 239
Query: 361 WIV-----KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDM 414
K + + K N ++ + ++K++LS ++ +V+ + + V+ +
Sbjct: 240 HFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSR 299
Query: 415 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474
++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S F L
Sbjct: 300 EELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLS 359
Query: 475 TSIDPDKAVVFGAAIQA 491
T+++ D+A+ GAA
Sbjct: 360 TTLNQDEAIAKGAAFIC 376
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-37
Identities = 114/389 (29%), Positives = 187/389 (48%), Gaps = 37/389 (9%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID G + VA+ R E + ++Y P+ + + P + +G AK + KN
Sbjct: 3 VGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNR-SIGAAAKSQVISNAKN 61
Query: 196 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 246
T+ KRF R + S YD Q G IK + + +++A +
Sbjct: 62 TVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLL 121
Query: 247 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 306
LK+ AE+A+ + V++VP ++ D +R+ +A ++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYG 181
Query: 307 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 360
+ K D+G + +S+ F G KVL+ D+ LGG FD L +
Sbjct: 182 IYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLVN 241
Query: 361 WIVKNAFLKKLSYKDVNILMIKSR------------EIKELLSYQSS-VKLNVKLSDKKI 407
+ + F KK YK L IKS+ ++K+L+S +S + LN++ I
Sbjct: 242 YFCEE-FGKK--YK----LDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDI 294
Query: 408 -VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 466
V+ T++ +F + L+ R L A L +DI V +VGG+TR+ + E +S
Sbjct: 295 DVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKIS 354
Query: 467 NFFKTTLLTSIDPDKAVVFGAAIQANFLS 495
FF + T+++ D+AV G A+Q LS
Sbjct: 355 KFFGKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 6e-34
Identities = 104/385 (27%), Positives = 188/385 (48%), Gaps = 29/385 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID G N +A+ R+ E + ++Y P+ + L +G AK + +N
Sbjct: 3 VGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACIS-LGSRTRAIGNAAKSQIVTNVRN 61
Query: 196 TISSIKRFIARDLKN--INTN--SFPYDFQN--------KFGMLHIKTISGIKSPIEISA 243
TI K+ R + + T PY+ Q K L + I+ +++
Sbjct: 62 TIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIE---QVTG 118
Query: 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+ LK+ +ENA+ + VI++P++F D +R+ AA++AGLN LRL+NE T+ A+
Sbjct: 119 MLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVAL 178
Query: 304 AYKLDKNIFEGI------FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 357
AY + K + D+G + +S+ F G KVL+ D LGG +FD
Sbjct: 179 AYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEA 238
Query: 358 LFSWIVKNAFLK-KLSYKDVNILMIK----SREIKELLSYQSS-VKLNVK-LSDKKIVNI 410
L + K K++ K+ + +++ ++K+L+S +S + LN++ + V+
Sbjct: 239 LVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSS 298
Query: 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 470
++ QF + L+ R + ANL +DI ++ +VGG+TR+ + E +++FF
Sbjct: 299 KMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL 358
Query: 471 TTLLTSIDPDKAVVFGAAIQANFLS 495
+ T+++ D+AV G A+Q LS
Sbjct: 359 KDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 8e-27
Identities = 40/117 (34%), Positives = 61/117 (52%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
++F F LP F +D LD Y Q ++HPD F ++ +++ +T N+AY L
Sbjct: 7 DHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTL 66
Query: 63 KDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALL 119
+DP R+ YL L G+D+ + N FL QQM+WRE + + +D ALL
Sbjct: 67 RDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDARAARDVDALDALL 123
|
Length = 176 |
| >gnl|CDD|179335 PRK01773, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 5e-24
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
M N F F+LP F +D LL + Y QK +HPDNF S +Q +++ S +N A
Sbjct: 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQ 60
Query: 61 ILKDPFLRSIYLCKLN-GIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALL 119
ILKDP LR+ + LN G N + FL QQM+WRE L I+ ++D+ A
Sbjct: 61 ILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFLMQQMEWREQLEEIEQQQDEDALTAFS 120
Query: 120 Q 120
+
Sbjct: 121 K 121
|
Length = 173 |
| >gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 4e-23
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+YF F LP ++ID LL Y Q++ HPD F S+ ++ +V+ + +N AY L
Sbjct: 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTL 61
Query: 63 KDPFLRSIYLCKLNGIDLNTKLNLNFSH---D--FLEQQMKWRETLSIIKNKKD 111
K P R+ YL L+G DL + H D FL +QM+ RE L I+ KD
Sbjct: 62 KHPLKRAEYLLSLHGFDLA-----HEQHTVRDTAFLMEQMELREELEDIEQSKD 110
|
Length = 171 |
| >gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 3e-21
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+ F F LP+ F ID+D L Y Q+ HPD F + S+ +Q +++ S +N AY L
Sbjct: 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTL 61
Query: 63 KDPFLRSIY-LCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQI 121
KDP LR+ Y L +G+D + FL +Q + RE L + + D+ + +L +
Sbjct: 62 KDPLLRAEYLLALADGLDHAKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLGV 121
Query: 122 SEPDDI 127
D
Sbjct: 122 EIKADQ 127
|
Length = 174 |
| >gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 3e-17
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 14 FNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73
+ +D L K Y Q + HPD +Q A+ + ST LN+AY LKDP R+ Y+
Sbjct: 1 WQLDQSRLRKRYRQLQAQYHPD--ASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYML 58
Query: 74 KLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111
KL IDL + F + +K R+ L I+ D
Sbjct: 59 KLLNIDLTQEQTSERDTAFPMELLKVRDELDEIEQMDD 96
|
This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-16
Identities = 86/427 (20%), Positives = 150/427 (35%), Gaps = 93/427 (21%)
Query: 134 VSIGIDFGTTNSLVA--IVRNNIPEVL-------KDKYGYFLIPSIVRYLPDGKIY-VGK 183
+ +GIDFGTT S VA + ++ P++ + GY +P+ + Y P+GK+ G
Sbjct: 1 LVVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGY 60
Query: 184 KAK--ITQNIDPKNTISSIKRF----IARDLKNINTNSFPYDFQNKFGMLHIKTISGIKS 237
+A+ + + F LK +K + K+
Sbjct: 61 EAEREYAELEAEDEGWLFFEWFKLLLDPDALKLQG-------------DDKLKPLPPGKT 107
Query: 238 PIEISA----QIFITLKKIAENAVNNRIFGA-----VITVPAYFNDIQRQFTKNAAKLAG 288
+++ A ++ + + N F A V+TVPA ++D +Q + AA AG
Sbjct: 108 AVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAG 167
Query: 289 LNV-------LRLLNEPTSAAIA----YKLDKNIFEG-IFAVYDLGGGTFDIS---ILKF 333
L L ++ EP +AA+ + N+ G F V D GGGT D++ +
Sbjct: 168 LVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSV 227
Query: 334 KNGVFKVLSVGGDSNLGG------------------DDFDYCLFS--W-IVKNAFL-KKL 371
+ K L+ G G W I+ F K
Sbjct: 228 EPLRLKELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKR 287
Query: 372 SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITI---DMKQFFTITQHLVNRT 428
S+ + +L ++ + + I DMK F ++
Sbjct: 288 SFGG------TDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLF---DPVIEEI 338
Query: 429 I-LLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSIDPDKAVV 484
I L+ + ++ + + LVGG ++ + F +L DP AVV
Sbjct: 339 IDLI--EEQLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVV 396
Query: 485 FGAAIQA 491
GA +
Sbjct: 397 RGAVLFG 403
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 4e-16
Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 4 YFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILK 63
+F F+L F +D+D L Y +++HPD F + +Q +++ S LN+AY LK
Sbjct: 6 HFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLK 65
Query: 64 DPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111
P R+ YL L+G ++ ++ ++ +FL QQM+ RE L ++++ D
Sbjct: 66 SPPRRARYLLALSGHEVPLEVTVH-DPEFLLQQMQLREELEELQDEAD 112
|
Length = 173 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 3e-15
Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 54/249 (21%)
Query: 136 IGIDFGTTNSLVAIVRNNIPE--VLKDKYGYFLIPSIVRY-----LPDGKIYVGKKAKIT 188
+GIDFGT+NS VA+ R+ P L+ PS + + + ++ G+ A I
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTL--PSALFFPHEESALEREVLFGRAA-IA 57
Query: 189 QNID-PKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQI 245
++ P + S+K F+ L I G + E
Sbjct: 58 AYLEGPGEGRLMRSLKSFLGSSL------------------FRETRIFGRRLTFEDLVAR 99
Query: 246 FIT-LKKIAENAVNNRIFGAVITVPAYFNDI--------QRQFTKNAAKLAGLNVLRLLN 296
F+ LK+ AE A+ I VI P +F + + AA+ AG +
Sbjct: 100 FLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRA-AARAAGFKDVEFQY 158
Query: 297 EPTSAAIAY--KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK-------VLSVGGDS 347
EP +AA+ Y +L + E + V D+GGGT D S+++ +L+ G
Sbjct: 159 EPIAAALDYEQRLTR---EELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSGV- 214
Query: 348 NLGGDDFDY 356
+GG DFD
Sbjct: 215 RIGGTDFDR 223
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
M+NYF LP+ +NID+ +L+K Y+ Q K HPD K+ +++ ++ +++ LN AYS
Sbjct: 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDK--AKTLQEKEQNLIIASELNNAYS 58
Query: 61 ILKDPFLRSIYLCKLNGIDLNT-KLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALL 119
LKD R+ Y+ L I+LN K S L E + D K
Sbjct: 59 TLKDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEMERIENTILFSDLEKIKNKY 118
Query: 120 QISEPDDIS 128
++ ++I
Sbjct: 119 ELMYKNEID 127
|
Length = 166 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 56/239 (23%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIV--RYLPDGKIY----VGKKAKITQ 189
IGID GT N+LV + I VL + PS+V R D K VG +AK
Sbjct: 5 IGIDLGTANTLVYVKGRGI--VLNE-------PSVVAIRTDRDAKTKSILAVGHEAKEML 55
Query: 190 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITL 249
P N I +I R +K + DF+ M+ + FI
Sbjct: 56 GKTPGN-IVAI-----RPMK----DGVIADFEVTEKMI----------------KYFI-- 87
Query: 250 KKIAENAVNNRIFG--AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
K++ F VI VP+ ++R+ K +A AG + L+ EP +AAI L
Sbjct: 88 KQVHS---RKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL 144
Query: 308 DKNIFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365
+ E + V D+GGGT +++++ G+ S+ +GGD+FD + ++I +
Sbjct: 145 P--VEEPTGSMVVDIGGGTTEVAVISL-GGIVVSRSI----RVGGDEFDEAIINYIRRT 196
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-07
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+Y++ +P+ + + + K Y K HPD K+ D A K +N+AY +L
Sbjct: 1 DYYEILGVPR--DASDEEIKKAYRKLALKYHPD----KNPGDPAAEEK-FKEINEAYEVL 53
Query: 63 KDPFLRSIYL 72
DP R+IY
Sbjct: 54 SDPEKRAIYD 63
|
DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 97/391 (24%), Positives = 155/391 (39%), Gaps = 114/391 (29%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRY-LPDGKIY-VGKKAKITQNIDP 193
IGID GT N+LV + I VL PS+V GKI VG++AK
Sbjct: 1 IGIDLGTANTLVYVKGKGI--VLN-------EPSVVAIDTKTGKILAVGEEAK------- 44
Query: 194 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFIT--LKK 251
+ R NI P +K G+ + E + + +KK
Sbjct: 45 --------EMLGRTPGNIEV-IRP-----------LK--DGVIADFEA-TEAMLRYFIKK 81
Query: 252 IAENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 308
+F VI VP+ +++R+ +AA AG + L+ EP +AAI LD
Sbjct: 82 ----VKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD 137
Query: 309 KNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSNL---GGDDFDYCLFSW 361
IFE G V D+GGGT +I+ V+S+GG S GGDDFD
Sbjct: 138 --IFEPKGNMVV-DIGGGTTEIA----------VISLGGIVVSKSIRVGGDDFDEA---- 180
Query: 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNV----KLSDKKIVNIT-IDMK- 415
I++ ++++ Y L+I R +E+ K+ + L +++ + + D+
Sbjct: 181 IIR--YVRR-KYN----LLIGERTAEEI-------KIEIGSAYPLDEEETMEVKGRDLVT 226
Query: 416 ---QFFTITQHLVNRTILLSSKALMDANLTIK------------DI--NNVILVGGSTRM 458
+ +T V + +++A IK DI ++L GG +
Sbjct: 227 GLPRTVEVTSEEVREALKEPLDEIVEA---IKSVLEKTPPELAADILDRGIVLTGGGALL 283
Query: 459 KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489
+ + E +S + + DP V GA
Sbjct: 284 RGLDELISEETGLPVRVAEDPLTCVAKGAGK 314
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 67/241 (27%), Positives = 102/241 (42%), Gaps = 61/241 (25%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFL-IPSIVRYLPDGKI----YVGKKAKITQN 190
IGID GT N+LV G L PS+V +GK VG++AK
Sbjct: 9 IGIDLGTANTLVY----------VKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAK---Q 55
Query: 191 IDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 250
+ + T +I R +K+ F E+ + FI K
Sbjct: 56 MLGR-TPGNIV--AIRPMKDGVIADFEV--------------------TELMLKYFI--K 90
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
K+ +N + VI VP+ D++R+ K AA+ AG + L+ EP +AAI L
Sbjct: 91 KVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP-- 148
Query: 311 IFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIVK 364
I E + V D+GGGT +++ V+S+GG S+ +GGD D + ++ K
Sbjct: 149 IMEPTGSMVVDIGGGTTEVA----------VISLGGIVSSSSVRVGGDKMDEAIIVYVRK 198
Query: 365 N 365
Sbjct: 199 K 199
|
Length = 342 |
| >gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-06
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+Y++ +P+ + +D + K Y K HPD + ++ + +N+AY +
Sbjct: 1 TDYYEILGVPR--DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKE----INEAYEV 54
Query: 62 LKDP 65
L DP
Sbjct: 55 LSDP 58
|
Length = 60 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 249 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 308
LK E + + A +P + + N + AG+ VL +L+EPT+AA ++
Sbjct: 49 LKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK 108
Query: 309 KNIFEGIFAVYDLGGGTFDISILK 332
AV D+GGGT ISILK
Sbjct: 109 NG------AVVDVGGGTTGISILK 126
|
Length = 239 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 5e-06
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 249 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 308
LK E + + A +P ++ + N + AGL V +L+EPT+AA +D
Sbjct: 76 LKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID 135
Query: 309 KNIFEGIFAVYDLGGGTFDISILK 332
AV D+GGGT ISILK
Sbjct: 136 NG------AVVDIGGGTTGISILK 153
|
Length = 267 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 91/380 (23%), Positives = 149/380 (39%), Gaps = 92/380 (24%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDP 193
IGID GT N+LV + K K PS+V K + VG +AK P
Sbjct: 4 IGIDLGTANTLVYV---------KGKGIVLNEPSVVAINTKTKKVLAVGNEAKKMLGRTP 54
Query: 194 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 253
N I ++ R LK+ G+ + E++ + LK
Sbjct: 55 GN-IVAV-----RPLKD-----------------------GVIADFEVTEAM---LKYFI 82
Query: 254 ENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
+ R VI VP+ +++R+ K AAK AG + L+ EP +AAI L
Sbjct: 83 KKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGL--P 140
Query: 311 IFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIV 363
+ E G V D+GGGT +++ V+S+GG S + GD+ D + +I
Sbjct: 141 VEEPTGNMVV-DIGGGTTEVA----------VISLGGIVTSKSVRVAGDEMDEAIIKYIR 189
Query: 364 KNAFLKKLSYKDVNILMIKSR---EIK-ELLS-YQSSVKLNVKLSDKKIV-----NITID 413
K Y L+I R IK E+ S Y + + +++ + +V I I
Sbjct: 190 KK-------YN----LLIGERTAERIKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEIS 238
Query: 414 MKQFFTITQHLVNRTILLSSKALMD--ANLTIKDI--NNVILVGGSTRMKHIHEGVSNFF 469
++ + V+ + + L L DI ++L GG ++ + + +S+
Sbjct: 239 SEEVREALKEPVSAIVEAVKEVLEKTPPEL-AADIVDRGIVLTGGGALLRGLDKLLSDET 297
Query: 470 KTTLLTSIDPDKAVVFGAAI 489
+ + DP V G
Sbjct: 298 GLPVHIAEDPLTCVALGTGK 317
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 7e-06
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+Y+D +P + + + K Y K HPD D + + +N+AY +L
Sbjct: 1 DYYDILGVPP--DASDEEIKKAYRKLALKYHPDKN-----PDDPEAEEKFKEINEAYEVL 53
Query: 63 KD 64
D
Sbjct: 54 SD 55
|
DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 43/201 (21%)
Query: 249 LKKIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
LK A R F +I +P ++++ + AA+ AG + L+ EP +AAI
Sbjct: 80 LKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA 139
Query: 306 KLDKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG---DSNL--GGDDFDYCL 358
LD I + G V D+GGGT DI+ VLS+GG S++ GD FD
Sbjct: 140 GLD--ISQPSGNMVV-DIGGGTTDIA----------VLSLGGIVTSSSIKVAGDKFD--- 183
Query: 359 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 418
I++ +++K YK L+I R +E+ K+ + + ++++
Sbjct: 184 -EAIIR--YIRK-KYK----LLIGERTAEEI-------KIKIGTAFPGAREEEMEIRGRD 228
Query: 419 TITQHLVNRTILLSSKALMDA 439
+T + +TI ++S+ + +A
Sbjct: 229 LVTG--LPKTITVTSEEIREA 247
|
Length = 336 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 249 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 308
LK E + R A +P + + N + AGL VL +L+EPT+AA +LD
Sbjct: 81 LKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD 140
Query: 309 KNIFEGIFAVYDLGGGTFDISILK 332
V D+GGGT ISI+K
Sbjct: 141 DG------GVVDIGGGTTGISIVK 158
|
Length = 277 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 249 LKKIAENAVNN-----RIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
LK+I + A N R V+ P+ ++R+ +A K G + L+ EP +AAI
Sbjct: 81 LKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI 140
Query: 304 AYKL--DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361
L D+ + V D+GGGT +++I+ F GV S+ +GGD D + S+
Sbjct: 141 GADLPVDEPVAN---VVVDIGGGTTEVAIISF-GGVVSCHSI----RIGGDQLDEDIVSF 192
Query: 362 IVK 364
+ K
Sbjct: 193 VRK 195
|
Length = 335 |
| >gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.2 bits (93), Expect = 0.002
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS 60
+ +Y++ +P N ++ + K Y K HPD ++ D + + +N+AY
Sbjct: 5 LLDYYEILGVPP--NASLEEIKKAYRKLALKYHPD----RNPGDPKVAEEKFKEINEAYE 58
Query: 61 ILKDPFLRSIYL 72
IL DP R+ Y
Sbjct: 59 ILSDPERRAEYD 70
|
Length = 237 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 74/236 (31%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIV-RYLPDGKIY-VGKKAKITQNID- 192
IGID GT N+LV + I VL + PS+V GK+ VG++AK + +
Sbjct: 11 IGIDLGTANTLVYVKGKGI--VLNE-------PSVVAIDTKTGKVLAVGEEAK--EMLGR 59
Query: 193 -PKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFIT--L 249
P N I +I R LK+ G+ + E + + +
Sbjct: 60 TPGN-IEAI-----RPLKD-----------------------GVIADFEA-TEAMLRYFI 89
Query: 250 KKIAENAVNNRIFG----AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305
KK R F VI VP+ +++R+ + AA+ AG + L+ EP +AAI
Sbjct: 90 KK-----ARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGA 144
Query: 306 KLDKNIFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFD 355
L + E + V D+GGGT +++ V+S+GG S + GD+ D
Sbjct: 145 GLP--VTEPVGNMVVDIGGGTTEVA----------VISLGGIVYSESIRVAGDEMD 188
|
Length = 335 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 228 HIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQR---------- 277
G + ++ + L K A + + I IT P R
Sbjct: 29 TPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLL 88
Query: 278 QFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGV 337
A + G + ++N+ +AA+A L + + V DLG GT I+I ++G
Sbjct: 89 IPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTV-LVVDLGTGTTGIAI--VEDGK 145
Query: 338 FKVLSVG 344
V + G
Sbjct: 146 GGVGAAG 152
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 634 | |||
| KOG0100|consensus | 663 | 100.0 | ||
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| KOG0101|consensus | 620 | 100.0 | ||
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0103|consensus | 727 | 100.0 | ||
| KOG0104|consensus | 902 | 100.0 | ||
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 100.0 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.97 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.97 | |
| PRK01773 | 173 | hscB co-chaperone HscB; Provisional | 99.97 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.96 | |
| PRK03578 | 176 | hscB co-chaperone HscB; Provisional | 99.96 | |
| PRK00294 | 173 | hscB co-chaperone HscB; Provisional | 99.95 | |
| PRK05014 | 171 | hscB co-chaperone HscB; Provisional | 99.95 | |
| PRK01356 | 166 | hscB co-chaperone HscB; Provisional | 99.95 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.92 | |
| TIGR00714 | 157 | hscB Fe-S protein assembly co-chaperone HscB. This | 99.91 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.9 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.81 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.8 | |
| KOG3192|consensus | 168 | 99.79 | ||
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.75 | |
| COG0484 | 371 | DnaJ DnaJ-class molecular chaperone with C-termina | 99.72 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.72 | |
| KOG0713|consensus | 336 | 99.69 | ||
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.62 | |
| PF00226 | 64 | DnaJ: DnaJ domain; InterPro: IPR001623 The prokary | 99.61 | |
| KOG0718|consensus | 546 | 99.59 | ||
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.57 | |
| PRK14288 | 369 | chaperone protein DnaJ; Provisional | 99.55 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.53 | |
| PRK14296 | 372 | chaperone protein DnaJ; Provisional | 99.53 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.52 | |
| PTZ00281 | 376 | actin; Provisional | 99.52 | |
| PRK14282 | 369 | chaperone protein DnaJ; Provisional | 99.5 | |
| PRK14286 | 372 | chaperone protein DnaJ; Provisional | 99.5 | |
| smart00271 | 60 | DnaJ DnaJ molecular chaperone homology domain. | 99.5 | |
| PTZ00004 | 378 | actin-2; Provisional | 99.49 | |
| PRK14279 | 392 | chaperone protein DnaJ; Provisional | 99.49 | |
| KOG0712|consensus | 337 | 99.48 | ||
| PTZ00452 | 375 | actin; Provisional | 99.48 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 99.47 | |
| PRK14295 | 389 | chaperone protein DnaJ; Provisional | 99.47 | |
| PRK14285 | 365 | chaperone protein DnaJ; Provisional | 99.46 | |
| PRK14287 | 371 | chaperone protein DnaJ; Provisional | 99.46 | |
| PRK14301 | 373 | chaperone protein DnaJ; Provisional | 99.46 | |
| KOG0717|consensus | 508 | 99.46 | ||
| PRK14278 | 378 | chaperone protein DnaJ; Provisional | 99.46 | |
| cd06257 | 55 | DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho | 99.45 | |
| PRK14281 | 397 | chaperone protein DnaJ; Provisional | 99.45 | |
| PTZ00037 | 421 | DnaJ_C chaperone protein; Provisional | 99.45 | |
| PRK14299 | 291 | chaperone protein DnaJ; Provisional | 99.45 | |
| PRK14277 | 386 | chaperone protein DnaJ; Provisional | 99.45 | |
| PRK14294 | 366 | chaperone protein DnaJ; Provisional | 99.44 | |
| PRK14297 | 380 | chaperone protein DnaJ; Provisional | 99.44 | |
| PRK14292 | 371 | chaperone protein DnaJ; Provisional | 99.44 | |
| PRK14276 | 380 | chaperone protein DnaJ; Provisional | 99.44 | |
| PRK14291 | 382 | chaperone protein DnaJ; Provisional | 99.44 | |
| PRK14284 | 391 | chaperone protein DnaJ; Provisional | 99.44 | |
| PRK14298 | 377 | chaperone protein DnaJ; Provisional | 99.43 | |
| PRK14290 | 365 | chaperone protein DnaJ; Provisional | 99.43 | |
| KOG0716|consensus | 279 | 99.43 | ||
| PRK14280 | 376 | chaperone protein DnaJ; Provisional | 99.43 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 99.42 | |
| PRK14300 | 372 | chaperone protein DnaJ; Provisional | 99.41 | |
| PRK10767 | 371 | chaperone protein DnaJ; Provisional | 99.41 | |
| PRK10266 | 306 | curved DNA-binding protein CbpA; Provisional | 99.4 | |
| PRK14283 | 378 | chaperone protein DnaJ; Provisional | 99.4 | |
| KOG0719|consensus | 264 | 99.39 | ||
| PRK14293 | 374 | chaperone protein DnaJ; Provisional | 99.38 | |
| COG1076 | 174 | DjlA DnaJ-domain-containing proteins 1 [Posttransl | 99.37 | |
| TIGR02349 | 354 | DnaJ_bact chaperone protein DnaJ. This model repre | 99.37 | |
| KOG0691|consensus | 296 | 99.36 | ||
| PTZ00341 | 1136 | Ring-infected erythrocyte surface antigen; Provisi | 99.36 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 99.36 | |
| PRK14289 | 386 | chaperone protein DnaJ; Provisional | 99.36 | |
| KOG0715|consensus | 288 | 99.34 | ||
| KOG0721|consensus | 230 | 99.32 | ||
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 99.31 | |
| TIGR03835 | 871 | termin_org_DnaJ terminal organelle assembly protei | 99.3 | |
| KOG0679|consensus | 426 | 99.21 | ||
| PHA03102 | 153 | Small T antigen; Reviewed | 99.2 | |
| KOG0624|consensus | 504 | 99.19 | ||
| COG2214 | 237 | CbpA DnaJ-class molecular chaperone [Posttranslati | 99.16 | |
| KOG0722|consensus | 329 | 99.1 | ||
| KOG0720|consensus | 490 | 99.03 | ||
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 99.03 | |
| PRK09430 | 267 | djlA Dna-J like membrane chaperone protein; Provis | 98.99 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 98.89 | |
| KOG0550|consensus | 486 | 98.88 | ||
| PTZ00100 | 116 | DnaJ chaperone protein; Provisional | 98.82 | |
| PHA02624 | 647 | large T antigen; Provisional | 98.77 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 98.77 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 98.76 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.67 | |
| KOG0714|consensus | 306 | 98.63 | ||
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 98.58 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.55 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 98.52 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.47 | |
| KOG1150|consensus | 250 | 98.39 | ||
| COG5269 | 379 | ZUO1 Ribosome-associated chaperone zuotin [Transla | 98.37 | |
| KOG0676|consensus | 372 | 98.36 | ||
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 98.27 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 98.23 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 98.13 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 97.99 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.92 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 97.89 | |
| KOG0797|consensus | 618 | 97.74 | ||
| KOG0677|consensus | 389 | 97.65 | ||
| KOG0568|consensus | 342 | 97.57 | ||
| KOG1789|consensus | 2235 | 97.56 | ||
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 97.54 | |
| PRK15027 | 484 | xylulokinase; Provisional | 97.29 | |
| KOG0680|consensus | 400 | 97.19 | ||
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 97.13 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 97.11 | |
| KOG0681|consensus | 645 | 97.1 | ||
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 97.0 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 96.99 | |
| KOG0723|consensus | 112 | 96.84 | ||
| PF07743 | 78 | HSCB_C: HSCB C-terminal oligomerisation domain; In | 96.71 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 96.66 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 96.64 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 96.49 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 96.39 | |
| PLN02669 | 556 | xylulokinase | 96.2 | |
| KOG0431|consensus | 453 | 96.18 | ||
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 96.09 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 96.05 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 96.02 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 95.82 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 95.8 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 95.72 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 95.69 | |
| PLN02295 | 512 | glycerol kinase | 95.69 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 95.66 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 95.6 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 95.6 | |
| PRK04123 | 548 | ribulokinase; Provisional | 95.6 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 95.55 | |
| KOG2517|consensus | 516 | 95.43 | ||
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 95.26 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 95.17 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 95.14 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 95.09 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 94.7 | |
| COG3426 | 358 | Butyrate kinase [Energy production and conversion] | 94.39 | |
| COG1076 | 174 | DjlA DnaJ-domain-containing proteins 1 [Posttransl | 94.16 | |
| KOG2531|consensus | 545 | 94.13 | ||
| PF13941 | 457 | MutL: MutL protein | 94.02 | |
| PRK09604 | 332 | UGMP family protein; Validated | 93.49 | |
| PRK09698 | 302 | D-allose kinase; Provisional | 92.61 | |
| PRK09557 | 301 | fructokinase; Reviewed | 92.59 | |
| KOG0681|consensus | 645 | 92.47 | ||
| PRK14101 | 638 | bifunctional glucokinase/RpiR family transcription | 91.77 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 91.15 | |
| PF14687 | 112 | DUF4460: Domain of unknown function (DUF4460) | 90.95 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 90.36 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 90.06 | |
| PRK09585 | 365 | anmK anhydro-N-acetylmuramic acid kinase; Reviewed | 90.01 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 89.78 | |
| PRK03011 | 358 | butyrate kinase; Provisional | 89.66 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 89.63 | |
| COG1521 | 251 | Pantothenate kinase type III (Bvg accessory factor | 89.38 | |
| PF03702 | 364 | UPF0075: Uncharacterised protein family (UPF0075); | 88.85 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 88.79 | |
| PLN02666 | 1275 | 5-oxoprolinase | 88.57 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 87.17 | |
| COG5026 | 466 | Hexokinase [Carbohydrate transport and metabolism] | 86.74 | |
| PRK13310 | 303 | N-acetyl-D-glucosamine kinase; Provisional | 86.52 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 86.14 | |
| KOG1385|consensus | 453 | 82.69 | ||
| TIGR03723 | 314 | bact_gcp putative glycoprotease GCP. This model re | 82.32 | |
| PF00370 | 245 | FGGY_N: FGGY family of carbohydrate kinases, N-ter | 81.99 | |
| PF02543 | 360 | CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036 | 81.83 | |
| PRK00976 | 326 | hypothetical protein; Provisional | 81.64 |
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-107 Score=788.09 Aligned_cols=501 Identities=40% Similarity=0.625 Sum_probs=481.7
Q ss_pred CceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC-
Q psy8852 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN- 210 (634)
Q Consensus 132 ~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~- 210 (634)
...+|||||||||||++++.+|+++++.|.+|+|.+||+|+|.++ ++++|+.|+++...||++++++.||+||+.+++
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 367999999999999999999999999999999999999999987 799999999999999999999999999999988
Q ss_pred -cccC--CCCeEEecCCCceEEEec-----CcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q psy8852 211 -INTN--SFPYDFQNKFGMLHIKTI-----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN 282 (634)
Q Consensus 211 -~~~~--~~~~~i~~~~~~~~~~~~-----~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 282 (634)
++.+ ++||++++.++.+++.+. .+.++|+++.+|+|..+++.|+.++|.++..+|+||||||++.||+++++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 5655 899999988888888743 24899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 283 AAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 283 aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
|..+||++++++|+||+|||++|+++......++||||+||||||+|++.+++|+|+++++.|+.++||++||.++++|+
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHH
Confidence 99999999999999999999999999987889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 363 VKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 436 (634)
Q Consensus 363 ~~~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l 436 (634)
.+.++++. .+.+++.+|+++||+||..||++.++.+.|+ +++|.+++-++||..||++..+++...+.++.++|
T Consensus 274 iklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl 353 (663)
T KOG0100|consen 274 IKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVL 353 (663)
T ss_pred HHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHH
Confidence 99998765 5778999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc-cCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccce
Q psy8852 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFF-KTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLG 515 (634)
Q Consensus 437 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~g 515 (634)
+++++.+.+|+.|+||||++|+|.+|++|+++| |+......||++|||+|||.+|..++|... ..++++.|++|.++|
T Consensus 354 ~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~-t~divLLDv~pLtlG 432 (663)
T KOG0100|consen 354 EDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEED-TGDIVLLDVNPLTLG 432 (663)
T ss_pred hhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccC-cCcEEEEeeccccce
Confidence 999999999999999999999999999999999 788999999999999999999999999876 789999999999999
Q ss_pred EEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECC
Q psy8852 516 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDA 595 (634)
Q Consensus 516 i~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~ 595 (634)
|++.+|.|..||||||.+|+++++.|++..|+|..+.|.+|+||+....+|+.||.|.+.++||+|+|.++|+|+|++|.
T Consensus 433 IETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDa 512 (663)
T KOG0100|consen 433 IETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDA 512 (663)
T ss_pred eeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEecCCeEEEEEEecCC-CCCHHHHHHhhhcC
Q psy8852 596 DGLLSIFAYEKISGKKKFITIKPFY-NMNLDEIKSNLKDK 634 (634)
Q Consensus 596 ~g~l~v~~~~~~~g~~~~~~i~~~~-~~~~~ei~~~~~~~ 634 (634)
||+|+|++.|+++|+..+++|+++. .||+|+|++|++||
T Consensus 513 ngiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eA 552 (663)
T KOG0100|consen 513 NGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEA 552 (663)
T ss_pred CceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999985 69999999999875
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-90 Score=765.79 Aligned_cols=498 Identities=39% Similarity=0.625 Sum_probs=463.7
Q ss_pred CceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC-
Q psy8852 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN- 210 (634)
Q Consensus 132 ~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~- 210 (634)
...+||||||||||++|++.+|.++++.|..|.+.+||+|+|.++ .+++|..|......+|.++++++||+||+.+.+
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~ 104 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence 456899999999999999999999999999999999999999765 589999999999999999999999999998776
Q ss_pred -cccC--CCCeEEe-cCCCceEEEe-cCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q psy8852 211 -INTN--SFPYDFQ-NKFGMLHIKT-ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285 (634)
Q Consensus 211 -~~~~--~~~~~i~-~~~~~~~~~~-~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~ 285 (634)
++.. .+||+++ ..++.+.+.. .+..++|+++.+++|++|+..++.++|.++..+|||||++|++.||+++++||+
T Consensus 105 ~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~ 184 (657)
T PTZ00186 105 HIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHH
Confidence 3333 6899998 6677777664 356899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 365 (634)
.|||+++++++||+|||++|+.... .+++++|||+||||||+|++++.++.++++++.|+.++||++||..|++|+.++
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~ 263 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEE 263 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHH
Confidence 9999999999999999999998765 678999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec----CC-ceeEEEEeHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 366 AFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS----DK-KIVNITIDMKQFFTITQHLVNRTILLSSKA 435 (634)
Q Consensus 366 ~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~----~g-~~~~~~itr~~~e~~~~~~~~~~~~~i~~~ 435 (634)
|+... .+++.+.+|+.+||++|+.||....+.+.++.. +| .++.+.|||++|+++++|+++++..+++++
T Consensus 264 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~ 343 (657)
T PTZ00186 264 FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQC 343 (657)
T ss_pred HhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 97654 357888999999999999999999998888742 22 468899999999999999999999999999
Q ss_pred HHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccce
Q psy8852 436 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLG 515 (634)
Q Consensus 436 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~g 515 (634)
|+++++++.+|+.|+||||+||+|.|+++|+++||..+....||++|||+|||++|+.+++.. .++.+.|++|++||
T Consensus 344 L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~---~~~~l~Dv~p~slg 420 (657)
T PTZ00186 344 MKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDV---KGLVLLDVTPLSLG 420 (657)
T ss_pred HHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhcccc---CceEEEeecccccc
Confidence 999999999999999999999999999999999998888899999999999999999998753 47899999999999
Q ss_pred EEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECC
Q psy8852 516 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDA 595 (634)
Q Consensus 516 i~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~ 595 (634)
|++.++.+.+|||||++||++++..|++..|+|+.+.|.|||||+....+|..||+++|.++|+.|+|.++|+|+|++|.
T Consensus 421 ie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~ 500 (657)
T PTZ00186 421 IETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDA 500 (657)
T ss_pred ceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 596 DGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 596 ~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
||+|+|++.++.||++.+++|.++.+||++||++|++++
T Consensus 501 nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~ 539 (657)
T PTZ00186 501 NGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDS 539 (657)
T ss_pred CCEEEEEEEEccCCcEEEEEeccCccCCHHHHHHHHHHH
Confidence 999999999999999999999988899999999999863
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-89 Score=752.84 Aligned_cols=496 Identities=54% Similarity=0.847 Sum_probs=469.1
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcccC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN 214 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~ 214 (634)
+||||||||||++|++.+|.++++.|..|.+.+||+|+|.+++.+++|..|+.+...+|.++++++||+||+.+.+++..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~~ 80 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKTF 80 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhhc
Confidence 48999999999999999999999999999999999999987778999999999999999999999999999998775433
Q ss_pred -CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q psy8852 215 -SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 292 (634)
Q Consensus 215 -~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~ 292 (634)
.+||.++ ..+|.+.+...++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~ 160 (599)
T TIGR01991 81 SILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVL 160 (599)
T ss_pred ccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCce
Confidence 6799988 67788888887789999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc-C
Q psy8852 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-L 371 (634)
Q Consensus 293 ~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~-~ 371 (634)
++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||++||..|++|+.++++... .
T Consensus 161 ~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~ 239 (599)
T TIGR01991 161 RLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADL 239 (599)
T ss_pred EEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999998775 67889999999999999999999999999999999999999999999999999887653 6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEE
Q psy8852 372 SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVIL 451 (634)
Q Consensus 372 ~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViL 451 (634)
+++.+.+|+.+||++|+.||.+..+.+.++. +|.++.++|||++|+++++|+++++..+++++|+++++.+.+|+.|+|
T Consensus 240 ~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViL 318 (599)
T TIGR01991 240 NPEDQRLLLQAARAAKEALTDAESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVL 318 (599)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEE
Confidence 7888999999999999999999998888876 788999999999999999999999999999999999999999999999
Q ss_pred EcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEEecceeeEEeeCCC
Q psy8852 452 VGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNT 531 (634)
Q Consensus 452 vGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~li~~g~ 531 (634)
|||+|++|+|++.|++.||..+..+.||++|||.|||++|+.+++... ..++.+.|++|++||+++.++.+.+|||||+
T Consensus 319 vGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~-~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt 397 (599)
T TIGR01991 319 VGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRI-GNDLLLLDVTPLSLGIETMGGLVEKIIPRNT 397 (599)
T ss_pred ECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccc-cCceEEEEeeeeeeEEEecCCEEEEEEeCCC
Confidence 999999999999999999998888999999999999999999987654 4578999999999999999999999999999
Q ss_pred ccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCeeEEEEEEEecCCeE
Q psy8852 532 TIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKK 611 (634)
Q Consensus 532 ~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~~g~~ 611 (634)
++|++++..|++..|+|+.+.|.||||++....+|..||++.|.++|+.+.|.++|+|+|++|.+|+|+|++.++.+|++
T Consensus 398 ~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~ 477 (599)
T TIGR01991 398 PIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVE 477 (599)
T ss_pred cCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHHhhhc
Q psy8852 612 KFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 612 ~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
.++.|.++.+|+++||++++++
T Consensus 478 ~~~~i~~~~~l~~~~i~~~~~~ 499 (599)
T TIGR01991 478 QSIQVKPSYGLSDEEIERMLKD 499 (599)
T ss_pred EEEecccccCCCHHHHHHHHHH
Confidence 9999988889999999999876
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-89 Score=756.08 Aligned_cols=508 Identities=57% Similarity=0.861 Sum_probs=473.6
Q ss_pred hhhcCCCCCcccC-CCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCch
Q psy8852 118 LLQISEPDDISVK-NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNT 196 (634)
Q Consensus 118 ~~~~~~p~~~~~p-~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~ 196 (634)
+..++.|.+.++| +++++||||||||||++|++.+|+++++.+..|++.+||+|+|.+++ ++||..|..+...+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~-~~vG~~A~~~~~~~p~~t 81 (616)
T PRK05183 3 LLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKNT 81 (616)
T ss_pred eEEecCCCCCCCcccCCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCC-EEEcHHHHHhhHhCchhh
Confidence 3456678777777 55689999999999999999999999999999999999999998765 999999999999999999
Q ss_pred hhhhhhhcCCCCCCcccC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCC
Q psy8852 197 ISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFN 273 (634)
Q Consensus 197 i~~~k~~lg~~~~~~~~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~ 273 (634)
++++||+||+.+.+++.. .+||.+. ..+|.+.+...++.++|+++.+++|++|++.++.++|.++.++|||||++|+
T Consensus 82 i~~~KrliG~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~ 161 (616)
T PRK05183 82 ISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFD 161 (616)
T ss_pred HHHHHHHhCCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCC
Confidence 999999999998775543 6799888 5688888888778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchh
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 353 (634)
+.||+++++||+.||++++++++||+|||++|+.... .+++++|||+||||||+|++++.++.++++++.|+..+||.+
T Consensus 162 ~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d 240 (616)
T PRK05183 162 DAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDD 240 (616)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHH
Confidence 9999999999999999999999999999999998765 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHH
Q psy8852 354 FDYCLFSWIVKNAFLKK-LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 432 (634)
Q Consensus 354 id~~l~~~l~~~~~~~~-~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i 432 (634)
||..|++|+.++++... .+++.+.+|+.+||++|+.||.+..+.+.+...++ .|||++|+++++|+++++..++
T Consensus 241 ~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~-----~itr~efe~l~~~l~~~~~~~i 315 (616)
T PRK05183 241 FDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG-----EITREQFNALIAPLVKRTLLAC 315 (616)
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCC-----eEcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997665 68889999999999999999999988888753332 4999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccc
Q psy8852 433 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPL 512 (634)
Q Consensus 433 ~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 512 (634)
+++|+++++...+|+.|+||||+||+|+|++.|+++||..+..+.||++|||+|||++|+.+++..+ ..++.+.|++|+
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~-~~~~~l~dv~p~ 394 (616)
T PRK05183 316 RRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKP-DSDMLLLDVIPL 394 (616)
T ss_pred HHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccc-cCceEEEeeccc
Confidence 9999999999999999999999999999999999999988888899999999999999999987654 467999999999
Q ss_pred cceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEE
Q psy8852 513 SLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 592 (634)
Q Consensus 513 ~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~ 592 (634)
+||+++.+|.+.+|||||+++|+++++.|++..|+|+.+.+.+|||++....+|..||++.|.++|+.|.|.++|+|+|+
T Consensus 395 slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 474 (616)
T PRK05183 395 SLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQ 474 (616)
T ss_pred cccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 593 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 593 ~d~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
+|.+|+|+|++.++.+|++.++.++++.+||++||++++++
T Consensus 475 ~d~~Gil~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~ 515 (616)
T PRK05183 475 VDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKD 515 (616)
T ss_pred ECCCCeEEEEEEEcCCCcEEEecccccccCCHHHHHHHHHH
Confidence 99999999999999999999999988889999999999886
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-88 Score=749.69 Aligned_cols=497 Identities=39% Similarity=0.641 Sum_probs=463.9
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
..+||||||||||++|++.+|.+.++.|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~~ 81 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDELD 81 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhhH
Confidence 35899999999999999999999999999999999999999877789999999999999999999999999999987755
Q ss_pred cC--CCCeEEe-cCCCceEEEe--cCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLA 287 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~--~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~a 287 (634)
.. .+||.+. ..+|.+.+.. .+..++|+++++++|++|++.++.++|.++..+|||||++|++.||+++++||+.|
T Consensus 82 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 161 (668)
T PRK13410 82 PESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIA 161 (668)
T ss_pred HhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 44 6899998 6778887765 34589999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHh
Q psy8852 288 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 367 (634)
Q Consensus 288 Gl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 367 (634)
||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|.
T Consensus 162 Gl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~ 240 (668)
T PRK13410 162 GLEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFL 240 (668)
T ss_pred CCCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999998765 67899999999999999999999999999999999999999999999999999987
Q ss_pred hcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec-C----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 368 LKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-D----KKIVNITIDMKQFFTITQHLVNRTILLSSKALM 437 (634)
Q Consensus 368 ~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~-~----g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~ 437 (634)
... .+++.+.+|+.+||++|+.||.+..+.+.++.. . ..++.+.|||++|+++|+++++++..+|+++|+
T Consensus 241 ~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~ 320 (668)
T PRK13410 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALK 320 (668)
T ss_pred hhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 367888999999999999999999988888742 2 246889999999999999999999999999999
Q ss_pred HcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEE
Q psy8852 438 DANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIE 517 (634)
Q Consensus 438 ~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~ 517 (634)
++++.+.+|+.|+||||+||+|+|++.|+++||.++....||++|||+|||++|+.+++.. +++.+.|++|+++|++
T Consensus 321 ~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~---~~~~l~Dv~p~slgie 397 (668)
T PRK13410 321 DAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGEL---KDLLLLDVTPLSLGLE 397 (668)
T ss_pred HcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccc---cceeEEeeccccccce
Confidence 9999999999999999999999999999999998888899999999999999999998753 4789999999999999
Q ss_pred EecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCe
Q psy8852 518 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADG 597 (634)
Q Consensus 518 ~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g 597 (634)
+.+|.+.+|||+|+++|++++..|++..|+|+.+.|.+|||++....+|..||++.|.++|+.+.|.++|+|+|++|.+|
T Consensus 398 ~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nG 477 (668)
T PRK13410 398 TIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANG 477 (668)
T ss_pred ecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 598 LLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 598 ~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
+|+|++.+..+|++.+++|....+||++||++++++
T Consensus 478 iL~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~ 513 (668)
T PRK13410 478 ILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQE 513 (668)
T ss_pred EEEEEEEEcCCCceeeeeecccccCCHHHHHHHHHH
Confidence 999999999999999999988889999999999875
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-87 Score=749.67 Aligned_cols=498 Identities=41% Similarity=0.621 Sum_probs=464.9
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
+.+||||||||||++|++.+|.+.++.|..|++.+||+|+|.+++++++|..|..+...+|.++++++||+||+.+.+..
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 35899999999999999999999999999999999999999877779999999999999999999999999999987754
Q ss_pred cC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 289 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl 289 (634)
.. .+||.++ ..++.+.+.+.+..++|+++.+++|++|++.|+.++|.++.++|||||++|++.||+++++||+.|||
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl 161 (653)
T PRK13411 82 EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGL 161 (653)
T ss_pred HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 33 7899988 77788888888889999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhc
Q psy8852 290 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 369 (634)
+++++++||+|||++|+......+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|...
T Consensus 162 ~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~ 241 (653)
T PRK13411 162 EVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQ 241 (653)
T ss_pred CeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999876546788999999999999999999999999999999999999999999999999998754
Q ss_pred c-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec-----CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8852 370 K-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDA 439 (634)
Q Consensus 370 ~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~-----~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~ 439 (634)
. .+++.+.+|+.+||++|+.||.+..+.+.++.. ++.++.+.|||++|+++++|+++++..+++++|+++
T Consensus 242 ~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a 321 (653)
T PRK13411 242 EGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDA 321 (653)
T ss_pred hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 467888999999999999999999988888742 235789999999999999999999999999999999
Q ss_pred CCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc-CCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEE
Q psy8852 440 NLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIET 518 (634)
Q Consensus 440 ~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~ 518 (634)
++...+|+.|+||||+||+|+|++.|+++|| ..+..+.||++|||+|||++|+.+++.. +++.+.|++|++||++.
T Consensus 322 ~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~---~~~~~~dv~p~slgi~~ 398 (653)
T PRK13411 322 GLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEV---KDLLLLDVTPLSLGIET 398 (653)
T ss_pred CCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCc---cceeeeecccceeeEEe
Confidence 9999999999999999999999999999997 5677889999999999999999998753 47899999999999999
Q ss_pred ecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCee
Q psy8852 519 IGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 598 (634)
Q Consensus 519 ~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~ 598 (634)
.++.+.+||+||+++|+++++.|++..|+|+.+.|.+|||++....+|..||++.+.++|+.+.|.++|+|+|++|.+|+
T Consensus 399 ~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gi 478 (653)
T PRK13411 399 LGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI 478 (653)
T ss_pred cCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 599 LSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 599 l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
|+|++.+..+|++..+.+.+..+||++||++++++
T Consensus 479 l~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~ 513 (653)
T PRK13411 479 LKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQE 513 (653)
T ss_pred EEEEEeeccCCceEeeEEeccccchHHHHHHHHHH
Confidence 99999999999999999988888999999999875
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-86 Score=741.41 Aligned_cols=496 Identities=41% Similarity=0.626 Sum_probs=464.2
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc--
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-- 211 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~-- 211 (634)
.+||||||||||++|++.+|.++++.|..|++.+||+|+|.+++++++|..|..+...+|.++++++||+||+.+.+.
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 489999999999999999999999999999999999999987777999999999999999999999999999998763
Q ss_pred ccC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC
Q psy8852 212 NTN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 288 (634)
Q Consensus 212 ~~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aG 288 (634)
+.. .+||+++ ..+|.+.+.+.+..++|+++++++|++|++.++.++|.++.++|||||++|++.||+++++||+.||
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AG 201 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAG 201 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 322 6899988 6788888888888999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhh
Q psy8852 289 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 368 (634)
Q Consensus 289 l~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~ 368 (634)
++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|+.
T Consensus 202 l~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~ 280 (663)
T PTZ00400 202 LDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKK 280 (663)
T ss_pred CceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998765 678999999999999999999999999999999999999999999999999999875
Q ss_pred cc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec-C---C-ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 369 KK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-D---K-KIVNITIDMKQFFTITQHLVNRTILLSSKALMD 438 (634)
Q Consensus 369 ~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~-~---g-~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~ 438 (634)
.. .+++.+.+|+.+||++|+.||.+..+.+.++.. . | .++.++|||++|+++++|+++++..+++++|++
T Consensus 281 ~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~ 360 (663)
T PTZ00400 281 QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKD 360 (663)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 467888999999999999999999888888742 1 2 478999999999999999999999999999999
Q ss_pred cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEE
Q psy8852 439 ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIET 518 (634)
Q Consensus 439 ~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~ 518 (634)
+++.+.+|+.|+||||+|++|+|++.|+++||.++....||+++||+|||++|+.+++.. +++.+.|++|++||+++
T Consensus 361 a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~---~~~~~~dv~p~slgi~~ 437 (663)
T PTZ00400 361 AGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEI---KDLLLLDVTPLSLGIET 437 (663)
T ss_pred cCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCc---cceEEEeccccceEEEe
Confidence 999999999999999999999999999999999888899999999999999999988753 47899999999999999
Q ss_pred ecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCee
Q psy8852 519 IGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 598 (634)
Q Consensus 519 ~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~ 598 (634)
.++.+.+|||+|+++|++++..|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|++|.+|+
T Consensus 438 ~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gi 517 (663)
T PTZ00400 438 LGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGI 517 (663)
T ss_pred cCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 599 LSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 599 l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
|+|++.+..+|++.+++++...+||++||++++++
T Consensus 518 l~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~ 552 (663)
T PTZ00400 518 MNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKE 552 (663)
T ss_pred EEEEEEeccCCcEEEEEeeccccccHHHHHHHHHH
Confidence 99999999999999999988889999999999875
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-86 Score=739.08 Aligned_cols=499 Identities=40% Similarity=0.626 Sum_probs=465.0
Q ss_pred CCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC
Q psy8852 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 210 (634)
Q Consensus 131 ~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~ 210 (634)
+...+||||||||||++|++.+|.++++.|..|++.+||+|+|..++.+++|..|..+...+|.++++++|||||+.+.+
T Consensus 37 ~~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 116 (673)
T PLN03184 37 VAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 116 (673)
T ss_pred cCCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch
Confidence 45679999999999999999999999999999999999999998766799999999999999999999999999999877
Q ss_pred cccC--CCCeEEe-cCCCceEEEe--cCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q psy8852 211 INTN--SFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285 (634)
Q Consensus 211 ~~~~--~~~~~i~-~~~~~~~~~~--~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~ 285 (634)
++.. .+||+++ ..+|.+.+.. .+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 196 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGR 196 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 5443 6899998 6778877764 456899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 365 (634)
.||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+.++||++||+.|++|+.++
T Consensus 197 ~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~ 275 (673)
T PLN03184 197 IAGLEVLRIINEPTAASLAYGFEKK-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN 275 (673)
T ss_pred HCCCCeEEEeCcHHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 667899999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec----C-CceeEEEEeHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 366 AFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS----D-KKIVNITIDMKQFFTITQHLVNRTILLSSKA 435 (634)
Q Consensus 366 ~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~----~-g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~ 435 (634)
|.... .+++.+.+|+.+||++|+.||.+..+.+.++.. + +.++++.|||++|+++++++++++..+|+++
T Consensus 276 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~ 355 (673)
T PLN03184 276 FKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENA 355 (673)
T ss_pred HHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 87654 467889999999999999999999998888632 2 2578899999999999999999999999999
Q ss_pred HHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccce
Q psy8852 436 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLG 515 (634)
Q Consensus 436 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~g 515 (634)
|+++++...+|+.|+||||+||+|.|++.|+++||..+....||++|||+|||++|+.+++.. +++.+.|++|++||
T Consensus 356 L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~---~~~~~~dv~p~slg 432 (673)
T PLN03184 356 LRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEV---SDIVLLDVTPLSLG 432 (673)
T ss_pred HHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCc---cceEEEecccccce
Confidence 999999999999999999999999999999999998888889999999999999999998753 47899999999999
Q ss_pred EEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECC
Q psy8852 516 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDA 595 (634)
Q Consensus 516 i~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~ 595 (634)
+++.++.+.+|||+|+++|++++..|++..|+|+.+.|.+|||++....+|..||++.|.++|+.+.|.++|+|+|++|.
T Consensus 433 i~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~ 512 (673)
T PLN03184 433 LETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDA 512 (673)
T ss_pred EEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999998999999999999999999999889999999999
Q ss_pred CeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 596 DGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 596 ~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
+|+|+|++.+..+|++.++++..+.+||++|+++++++
T Consensus 513 ~GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~ 550 (673)
T PLN03184 513 NGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQE 550 (673)
T ss_pred CCeEEEEEEecCCCeEEEEEecccccccHHHHHHHHHH
Confidence 99999999999999999999988888999999999875
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-85 Score=733.15 Aligned_cols=496 Identities=43% Similarity=0.650 Sum_probs=463.8
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCccc
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 213 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 213 (634)
.+||||||||||++|++.+|.++++.|..|++.+||+|+|.+++++++|..|..+...+|.++++++||+||+...+++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 82 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQK 82 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHHH
Confidence 58999999999999999999999999999999999999998667799999999999999999999999999998444444
Q ss_pred C--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCc
Q psy8852 214 N--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLN 290 (634)
Q Consensus 214 ~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~ 290 (634)
. .+||+++ ..+|.+.+.+++..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.||++
T Consensus 83 ~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~ 162 (627)
T PRK00290 83 DIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLE 162 (627)
T ss_pred HhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 4 7899998 667888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc
Q psy8852 291 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370 (634)
Q Consensus 291 ~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 370 (634)
++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|+...
T Consensus 163 v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~ 241 (627)
T PRK00290 163 VLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKEN 241 (627)
T ss_pred eEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998765 67899999999999999999999999999999999999999999999999999987654
Q ss_pred -----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec-C----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy8852 371 -----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-D----KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN 440 (634)
Q Consensus 371 -----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~-~----g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~ 440 (634)
.+++.+.+|+.+||++|+.||.+..+.+.++.. . +.++.+.|||++|+++|+++++++...++++|+.++
T Consensus 242 ~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~ 321 (627)
T PRK00290 242 GIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAG 321 (627)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467889999999999999999999998888742 1 257889999999999999999999999999999999
Q ss_pred CCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEEec
Q psy8852 441 LTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIG 520 (634)
Q Consensus 441 ~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 520 (634)
+...+|+.|+||||+||+|+|++.|++.||.++..+.||++|||+|||++|+.+++.. +++.+.|++|++||++..+
T Consensus 322 ~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~---~~~~~~d~~~~slgi~~~~ 398 (627)
T PRK00290 322 LSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDV---KDVLLLDVTPLSLGIETLG 398 (627)
T ss_pred CChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCc---cceeeeeccceEEEEEecC
Confidence 9999999999999999999999999999999888899999999999999999998753 4789999999999999999
Q ss_pred ceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCeeEE
Q psy8852 521 GLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 600 (634)
Q Consensus 521 ~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~l~ 600 (634)
+.+.+|||+|+++|++++..|++..|+|+.+.|.+|+|++....+|..||++.|.++|+.+.|.++|+|+|++|.+|+|+
T Consensus 399 ~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~ 478 (627)
T PRK00290 399 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVH 478 (627)
T ss_pred CeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEE
Confidence 99999999999999999999999999999999999999999889999999999999999999988999999999999999
Q ss_pred EEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 601 IFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 601 v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
|++.+..+|++.++++..+.+|++++|++++++
T Consensus 479 v~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~ 511 (627)
T PRK00290 479 VSAKDKGTGKEQSITITASSGLSDEEIERMVKD 511 (627)
T ss_pred EEEEEccCCceeEEEeccccccCHHHHHHHHHH
Confidence 999999999999999988889999999999765
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-85 Score=729.48 Aligned_cols=497 Identities=43% Similarity=0.648 Sum_probs=464.4
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCccc
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 213 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 213 (634)
.+||||||||||++|++.+|.++++.|..|++.+||+|+|.+++++++|..|..+...+|.++++++||+||+.+.+++.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 37999999999999999999999999999999999999998777799999999999999999999999999998865544
Q ss_pred C--CCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q psy8852 214 N--SFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291 (634)
Q Consensus 214 ~--~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~ 291 (634)
. .+||.+...+|.+.+.+.+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.||+++
T Consensus 81 ~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v 160 (595)
T TIGR02350 81 EAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEV 160 (595)
T ss_pred HhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCce
Confidence 3 68899667888899998888999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc-
Q psy8852 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 370 (634)
Q Consensus 292 ~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~- 370 (634)
+++++||+|||++|+......+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|+...
T Consensus 161 ~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~ 240 (595)
T TIGR02350 161 LRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEG 240 (595)
T ss_pred EEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhC
Confidence 9999999999999998764467899999999999999999999999999999999999999999999999999887553
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec-----CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy8852 371 ----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANL 441 (634)
Q Consensus 371 ----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~-----~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~ 441 (634)
.+++.+.+|+.+||++|+.||.+..+.+.++.. ++.++.+.|||++|+++++|+++++..+++++|+++++
T Consensus 241 ~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~ 320 (595)
T TIGR02350 241 IDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGL 320 (595)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999988888742 13578899999999999999999999999999999999
Q ss_pred CcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEEecc
Q psy8852 442 TIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGG 521 (634)
Q Consensus 442 ~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 521 (634)
.+.+|+.|+||||+||+|+|++.|++.||.++..+.||++|||.|||++|+.+++.. +++.+.|++|++||+++.++
T Consensus 321 ~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~---~~~~~~d~~~~~igi~~~~~ 397 (595)
T TIGR02350 321 SASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDV---KDVLLLDVTPLSLGIETLGG 397 (595)
T ss_pred CHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCc---ccceeeecccceeEEEecCC
Confidence 999999999999999999999999999998888899999999999999999998753 47899999999999999999
Q ss_pred eeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCeeEEE
Q psy8852 522 LVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSI 601 (634)
Q Consensus 522 ~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~l~v 601 (634)
.+.+||++|+++|++++..|++..|+|+.+.+.+|+|++....+|..||++.|.++|+.+.|.++|+|+|++|.+|+|+|
T Consensus 398 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v 477 (595)
T TIGR02350 398 VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 (595)
T ss_pred ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999998899999999999999999999889999999999999999
Q ss_pred EEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 602 FAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 602 ~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
++.+..+|++.+++++.+.+||++|+++++++
T Consensus 478 ~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~ 509 (595)
T TIGR02350 478 SAKDKGTGKEQSITITASSGLSEEEIERMVKE 509 (595)
T ss_pred EEEEccCCceEEEEeccccccCHHHHHHHHHH
Confidence 99999999999999988889999999999864
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-85 Score=716.31 Aligned_cols=486 Identities=43% Similarity=0.674 Sum_probs=436.5
Q ss_pred hhhcCCCCCcccCC-CceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCch
Q psy8852 118 LLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNT 196 (634)
Q Consensus 118 ~~~~~~p~~~~~p~-~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~ 196 (634)
+..+++|.+++.|+ ..++||||||||||++|++.+|.++++.|..|++.+||+|+|.+++ ++||..| +
T Consensus 3 ~~~~~~~~~~~~~~~~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~-~~vG~~A----------t 71 (595)
T PRK01433 3 IIEIREPEQADFKQERQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-FTIGNNK----------G 71 (595)
T ss_pred eEEecCCCCCCccccCceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCC-EEECchh----------h
Confidence 45677888877774 4579999999999999999999999999999999999999997654 8999987 7
Q ss_pred hhhhhhhcCCCCCCcccCCCCe----EEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCC
Q psy8852 197 ISSIKRFIARDLKNINTNSFPY----DFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAY 271 (634)
Q Consensus 197 i~~~k~~lg~~~~~~~~~~~~~----~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~ 271 (634)
++++||++|+.+.+.......+ ... ..++.+.+...+..++|+++++++|++|++.|+.++|.++.++|||||++
T Consensus 72 i~~~KrliG~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~ 151 (595)
T PRK01433 72 LRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAH 151 (595)
T ss_pred HHHHHHHhCCCchhhccchhhHhhhhheeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCC
Confidence 9999999999986632211111 111 23345566667789999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccc
Q psy8852 272 FNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 351 (634)
Q Consensus 272 ~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG 351 (634)
|++.||+++++||+.||++++++++||+|||++|+.... ..+.+||||+||||||+|++++.++.++++++.|+..+||
T Consensus 152 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG 230 (595)
T PRK01433 152 FNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGG 230 (595)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC-CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccCh
Confidence 999999999999999999999999999999999998765 5678999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHH
Q psy8852 352 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILL 431 (634)
Q Consensus 352 ~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~ 431 (634)
++||..|++|+.+++.... +. ..+..||++|+.||.+..... ..++|||++|+++++|+++++..+
T Consensus 231 ~d~D~~l~~~~~~~~~~~~-~~----~~~~~~ekaK~~LS~~~~~~~---------~~~~itr~efe~l~~~l~~~~~~~ 296 (595)
T PRK01433 231 NDIDVVITQYLCNKFDLPN-SI----DTLQLAKKAKETLTYKDSFNN---------DNISINKQTLEQLILPLVERTINI 296 (595)
T ss_pred HHHHHHHHHHHHHhcCCCC-CH----HHHHHHHHHHHhcCCCccccc---------ceEEEcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886433 22 233469999999998775321 178899999999999999999999
Q ss_pred HHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeecc
Q psy8852 432 SSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIP 511 (634)
Q Consensus 432 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~ 511 (634)
++++|++++ ..+|+.|+||||+|++|+|++.|+++||.++..+.||++|||+|||++|+.+++.. .++.+.|++|
T Consensus 297 i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~---~~~~l~Dv~p 371 (595)
T PRK01433 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH---TNSLLIDVVP 371 (595)
T ss_pred HHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc---cceEEEEecc
Confidence 999999998 56899999999999999999999999999888899999999999999999987654 3789999999
Q ss_pred ccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEE
Q psy8852 512 LSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTY 591 (634)
Q Consensus 512 ~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~ 591 (634)
+++||++.+|.+.+||+||+++|+++++.|++..|+|+.+.|.+|||++....+|..||++.|.++|+.|.|.++|+|+|
T Consensus 372 ~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf 451 (595)
T PRK01433 372 LSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTF 451 (595)
T ss_pred cceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 592 QVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 592 ~~d~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
++|.||+|+|++.+..||++.++.|+.+.+||++||+++++++
T Consensus 452 ~id~~Gil~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~ 494 (595)
T PRK01433 452 AIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENA 494 (595)
T ss_pred EECCCCcEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999888889999999999863
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-84 Score=723.52 Aligned_cols=497 Identities=43% Similarity=0.661 Sum_probs=462.3
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
..+||||||||||++|++.+|.++++.|..|.+.+||+|+|.+++++++|..|......+|.++++++||+||+.+.++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~ 81 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEIS 81 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHH
Confidence 35899999999999999999999999999999999999999877779999999999999999999999999999987754
Q ss_pred cC--CCCeEEe-cCCCceEEEe--cCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLA 287 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~--~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~a 287 (634)
.. .+||.+. ..+|.+.+.. .+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.|
T Consensus 82 ~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 161 (621)
T CHL00094 82 EEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIA 161 (621)
T ss_pred hhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 44 6899998 5677777764 45689999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHh
Q psy8852 288 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 367 (634)
Q Consensus 288 Gl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~ 367 (634)
|++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||++||..|++|+.++|+
T Consensus 162 Gl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~ 240 (621)
T CHL00094 162 GLEVLRIINEPTAASLAYGLDKK-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFK 240 (621)
T ss_pred CCceEEEeccHHHHHHHhccccC-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765 66789999999999999999999999999999999999999999999999999987
Q ss_pred hcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecC-----CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 368 LKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSD-----KKIVNITIDMKQFFTITQHLVNRTILLSSKALM 437 (634)
Q Consensus 368 ~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~-----g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~ 437 (634)
... .+++.+.+|+.+||++|+.||.+..+.+.++... +.++...|||++|+++++++++++..+|+++|+
T Consensus 241 ~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 320 (621)
T CHL00094 241 KKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALK 320 (621)
T ss_pred HHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 3678899999999999999999998888887421 246888999999999999999999999999999
Q ss_pred HcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEE
Q psy8852 438 DANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIE 517 (634)
Q Consensus 438 ~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~ 517 (634)
++++...+|+.|+||||+||+|.|++.|+++||.++....||++|||+|||++|+.+++.. +++.+.|++|++||++
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~---~~~~~~d~~~~~lgi~ 397 (621)
T CHL00094 321 DAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEV---KDILLLDVTPLSLGVE 397 (621)
T ss_pred HcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCc---cceeeeeeeceeeeee
Confidence 9999999999999999999999999999999998888899999999999999999988753 4789999999999999
Q ss_pred EecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCe
Q psy8852 518 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADG 597 (634)
Q Consensus 518 ~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g 597 (634)
..++.+.+|||||+++|++++..|++..|+|+.+.+.+|||++....+|..||++.|.++|+.+.|.++|+|+|++|.+|
T Consensus 398 ~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~G 477 (621)
T CHL00094 398 TLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANG 477 (621)
T ss_pred ccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred eEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 598 LLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 598 ~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
+|+|++.+..+|++.++++.+..+|+++||++++++
T Consensus 478 il~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~ 513 (621)
T CHL00094 478 ILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKE 513 (621)
T ss_pred eEEEEEeeccCCceeeeeeccchhccHHHHHHHHHH
Confidence 999999999999999999988888999999999875
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-83 Score=718.08 Aligned_cols=499 Identities=38% Similarity=0.601 Sum_probs=457.9
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC--
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN-- 210 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~-- 210 (634)
..+||||||||||++|++.+|.++++.|..|++.+||+|+|.++ .+++|..|......+|.++++++||+||+.+++
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 34899999999999999999999999999999999999999755 589999999999999999999999999999876
Q ss_pred cccC--CCCeEEe-cCCCceEEEe--cC--cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q psy8852 211 INTN--SFPYDFQ-NKFGMLHIKT--IS--GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA 283 (634)
Q Consensus 211 ~~~~--~~~~~i~-~~~~~~~~~~--~~--~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a 283 (634)
++.. .+||.+. ..++.+.+.+ .+ ..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 3333 6899887 5666655543 23 47999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 284 AKLAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 284 a~~aGl~~~~li~Ep~AAa~~y~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
|+.||++++++++||+|||++|+..... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~ 242 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFC 242 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999986542 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc------CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 363 VKNAFLKK------LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 435 (634)
Q Consensus 363 ~~~~~~~~------~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~ 435 (634)
.++|..+. .+++.+.+|+.+||++|+.||.+..+.+.++ +.+|.++.++|||++|+++++|+++++...++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 322 (653)
T PTZ00009 243 VQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKV 322 (653)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986542 3678899999999999999999999999997 4678899999999999999999999999999999
Q ss_pred HHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc-CCcCCCCChhhHHHHHHHHHHhHhcCC--CCCCCceeEeeeccc
Q psy8852 436 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGN--RGIDDNFLLLDVIPL 512 (634)
Q Consensus 436 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~~~~~--~~~~~~~~~~~~~~~ 512 (634)
|+.++++..+|+.|+||||+||+|+|++.|+++|+ ..+....||++|||+|||++|+.+++. +. .+++.+.|++|+
T Consensus 323 L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~-~~~~~~~dv~p~ 401 (653)
T PTZ00009 323 LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQ-VQDLLLLDVTPL 401 (653)
T ss_pred HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCcccc-ccceEEEeeccc
Confidence 99999999999999999999999999999999996 467788999999999999999999874 22 457899999999
Q ss_pred cceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEE
Q psy8852 513 SLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 592 (634)
Q Consensus 513 ~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~ 592 (634)
+||++..++.+.+||++|+++|++++..|++..|+|+.+.|.||+|++....+|..||++.+.++|+.+.|.++|+|+|+
T Consensus 402 slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 481 (653)
T PTZ00009 402 SLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFD 481 (653)
T ss_pred ccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999889999999
Q ss_pred ECCCeeEEEEEEEecCCeEEEEEEecC-CCCCHHHHHHhhhc
Q psy8852 593 VDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKSNLKD 633 (634)
Q Consensus 593 ~d~~g~l~v~~~~~~~g~~~~~~i~~~-~~~~~~ei~~~~~~ 633 (634)
+|.+|+|+|++.+..+|++.++++... ..|+++++++++++
T Consensus 482 id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~ 523 (653)
T PTZ00009 482 IDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNE 523 (653)
T ss_pred ECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHH
Confidence 999999999999999999999888654 56999999998764
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-86 Score=667.82 Aligned_cols=501 Identities=43% Similarity=0.633 Sum_probs=478.8
Q ss_pred CCCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCC
Q psy8852 130 KNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLK 209 (634)
Q Consensus 130 p~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~ 209 (634)
+.+.-++|||+|||+||+++..++.+.++.|..|.+.+||+|+|..++++++|..|+.+...+|.++++.-||+||+.+.
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc--ccC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q psy8852 210 NI--NTN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAA 284 (634)
Q Consensus 210 ~~--~~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa 284 (634)
+. +.. -.||+++ ..||...+...+..++|.++.+++|.+++++++++++..+.+.|+||||||++.||+++++|.
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 73 333 6899999 899999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
++||++++++++||+|||++|+++.. .++.++|+|+||||||++++.+.++.+++.++.||.++||++||..+..|+..
T Consensus 184 ~iagl~vlrvineptaaalaygld~k-~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKK-EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred hhccceeeccCCccchhHHhhccccc-CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHH
Confidence 99999999999999999999999988 48899999999999999999999999999999999999999999999999999
Q ss_pred HHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec----CC-ceeEEEEeHHHHHHHHHHHHHHHHHHHHH
Q psy8852 365 NAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS----DK-KIVNITIDMKQFFTITQHLVNRTILLSSK 434 (634)
Q Consensus 365 ~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~----~g-~~~~~~itr~~~e~~~~~~~~~~~~~i~~ 434 (634)
.|+... .+...+.+|.+++|++|+.||...++++.+++. .| ..+++++||.+||+++.+++.+.+..+.+
T Consensus 263 ~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~ 342 (640)
T KOG0102|consen 263 EFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKK 342 (640)
T ss_pred hhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHH
Confidence 998765 578889999999999999999999999988851 22 67899999999999999999999999999
Q ss_pred HHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccc
Q psy8852 435 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSL 514 (634)
Q Consensus 435 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~ 514 (634)
+|+++++...+|+.|+|+||++|+|.+++.+++.||.......||+++||.|||+++..+++.- .++.+.|+.|.++
T Consensus 343 aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geV---kdvlLLdVtpLsL 419 (640)
T KOG0102|consen 343 ALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEV---KDVLLLDVTPLSL 419 (640)
T ss_pred HHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccc---cceeeeecchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999874 4999999999999
Q ss_pred eEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEEC
Q psy8852 515 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVD 594 (634)
Q Consensus 515 gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d 594 (634)
||+..+|.|..||+||+.||++++..|++..|+|+.++|.++|||++...+|+.+|+|.+.++||.|+|.++|.|+|.+|
T Consensus 420 gietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDId 499 (640)
T KOG0102|consen 420 GIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDID 499 (640)
T ss_pred HHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 595 ADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 595 ~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
++|+++|+|.|+.+|+..++++-.+.+||++||++|++++
T Consensus 500 anGI~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~ea 539 (640)
T KOG0102|consen 500 ANGIGTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEA 539 (640)
T ss_pred CCceeeeehhhcccCCccceEEeecCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999874
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-82 Score=662.97 Aligned_cols=501 Identities=38% Similarity=0.607 Sum_probs=468.0
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc-
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI- 211 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~- 211 (634)
..+||||||||++|++++.+|.++++.|.+|++.+||+|+|.++ +.++|..|..+...+|.++++++||++|+.+++.
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~ 85 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPE 85 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCccccchh
Confidence 56899999999999999999999999999999999999999876 5999999999999999999999999999999883
Q ss_pred -ccC--CCCeEEe-cCCCceEEEec----CcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q psy8852 212 -NTN--SFPYDFQ-NKFGMLHIKTI----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA 283 (634)
Q Consensus 212 -~~~--~~~~~i~-~~~~~~~~~~~----~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a 283 (634)
+.. +|||.+. ..++.+.+.+. ...++|+++.++.|..++..++.++|..+.++|+|||++|+..||+++.+|
T Consensus 86 v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A 165 (620)
T KOG0101|consen 86 VQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDA 165 (620)
T ss_pred hHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHH
Confidence 333 7899998 55566777643 248899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccC-ccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 284 AKLAGLNVLRLLNEPTSAAIAYKLDKN-IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 284 a~~aGl~~~~li~Ep~AAa~~y~~~~~-~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
+.+||++++++++||+|||++|++... ....+|+|+|+||||||+|++.+.++.+.++++.++.++||.+||+.+.+|+
T Consensus 166 ~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~ 245 (620)
T KOG0101|consen 166 ALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHF 245 (620)
T ss_pred HHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHH
Confidence 999999999999999999999997664 2677899999999999999999999988999999999999999999999999
Q ss_pred HHHHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 363 VKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 436 (634)
Q Consensus 363 ~~~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l 436 (634)
...|+.+. .+++.+++|+.+||.+|+.||...++++.++ +.+|.++...|||.+|+.++.+++.++..++..+|
T Consensus 246 ~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L 325 (620)
T KOG0101|consen 246 AAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKAL 325 (620)
T ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 99998765 5789999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc-CCcCCCCChhhHHHHHHHHHHhHhcCCCCC-CCceeEeeeccccc
Q psy8852 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNRGI-DDNFLLLDVIPLSL 514 (634)
Q Consensus 437 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~~~~~~~~-~~~~~~~~~~~~~~ 514 (634)
+++.+++.+|+.|+||||++++|.++..++++|+ +....+.||+++||+|||++|+.+++.... ..++.+.|+.|.++
T Consensus 326 ~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~ 405 (620)
T KOG0101|consen 326 KDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSL 405 (620)
T ss_pred HhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccc
Confidence 9999999999999999999999999999999995 566688999999999999999999876431 36789999999999
Q ss_pred eEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEEC
Q psy8852 515 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVD 594 (634)
Q Consensus 515 gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d 594 (634)
||+..++.|.++|++|+.+|+++++.|++..|+|..+.|.||+||+....+|..+|.|.|.++|+.|.|.+.|+++|.+|
T Consensus 406 gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD 485 (620)
T KOG0101|consen 406 GVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDID 485 (620)
T ss_pred cccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEecCCeEEEEEEecCC-CCCHHHHHHhhhcC
Q psy8852 595 ADGLLSIFAYEKISGKKKFITIKPFY-NMNLDEIKSNLKDK 634 (634)
Q Consensus 595 ~~g~l~v~~~~~~~g~~~~~~i~~~~-~~~~~ei~~~~~~~ 634 (634)
.+|+|.|++.|+++|+..+++|.+.. .||.++|++|..++
T Consensus 486 ~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea 526 (620)
T KOG0101|consen 486 ANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEA 526 (620)
T ss_pred CCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhh
Confidence 99999999999999999999998885 69999999987653
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-80 Score=676.93 Aligned_cols=484 Identities=46% Similarity=0.651 Sum_probs=455.1
Q ss_pred ceEEEEEeCCceEEEEEEECC-eeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 211 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g-~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~ 211 (634)
+.+||||||||||++|++.++ .+.++.|..|.+.+||+|+|..++++++|..|+.+...+|.++++.+||++|+....
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~- 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG- 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC-
Confidence 568999999999999999988 799999999999999999998777799999999999999999999999999987211
Q ss_pred ccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q psy8852 212 NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291 (634)
Q Consensus 212 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~ 291 (634)
....+...++.++|+++.+++|.++++.++.+++..+..+|||||+||++.||+++++|++.||+++
T Consensus 84 -------------~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~v 150 (579)
T COG0443 84 -------------LKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNV 150 (579)
T ss_pred -------------CcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Confidence 0022334456899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc-
Q psy8852 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 370 (634)
Q Consensus 292 ~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~- 370 (634)
+++++||+|||++|+.+.. .+..|+|||+||||||+|++++.++.++++++.|+.++||++||.+|.+|+..+|+...
T Consensus 151 lrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~ 229 (579)
T COG0443 151 LRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGG 229 (579)
T ss_pred EEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCC
Confidence 9999999999999999988 88999999999999999999999999999999999999999999999999999997665
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEe-cCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Q psy8852 371 ----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKD 445 (634)
Q Consensus 371 ----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~-~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~ 445 (634)
.++..+.+|+.+||++|+.||...++.+.+++ ..+.++..+|||++||.++.+++.++...+.++|.+++++..+
T Consensus 230 ~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~ 309 (579)
T COG0443 230 IDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSD 309 (579)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 45677899999999999999999999998875 3345688899999999999999999999999999999999999
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEEecceeeE
Q psy8852 446 INNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEK 525 (634)
Q Consensus 446 i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 525 (634)
|+.|+||||++|||.|++.++++||..+..+.||+++||.|||++|..+++..+ ++.+.|++|.++|++..++.+..
T Consensus 310 I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~---d~ll~Dv~plslgie~~~~~~~~ 386 (579)
T COG0443 310 IDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP---DVLLLDVIPLSLGIETLGGVRTP 386 (579)
T ss_pred CceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc---CceEEeeeeeccccccCcchhhh
Confidence 999999999999999999999999998999999999999999999999987654 88999999999999999999999
Q ss_pred EeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCeeEEEEEEE
Q psy8852 526 IIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYE 605 (634)
Q Consensus 526 li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~l~v~~~~ 605 (634)
++++|+.+|.++...|++..|+|+.+.+.+++|++....+|..+|.|.+.++|+.|.|.++|+|+|.+|.+|++.|++.+
T Consensus 387 ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~ 466 (579)
T COG0443 387 IIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKD 466 (579)
T ss_pred HHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 606 KISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 606 ~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
+.+|++..++|+.+.+|++++|++|++++
T Consensus 467 ~~~~k~~~i~i~~~~~ls~~~i~~~~~~a 495 (579)
T COG0443 467 LGTGKEQSITIKASSGLSDEEIERMVEDA 495 (579)
T ss_pred ccCCceEEEEEecCCCCCHHHHHHHHHHH
Confidence 99999999999999889999999999863
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-78 Score=681.10 Aligned_cols=497 Identities=39% Similarity=0.610 Sum_probs=447.5
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC--cc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN--IN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~--~~ 212 (634)
+|||||||+||++|++.+|.++++.+..|++.+||+|+|.++ ++++|..|.....++|.++++++|+|||+.+++ ++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 699999999999999999999999999999999999999876 699999999999999999999999999998876 33
Q ss_pred cC--CCCeEEe-cCCCceEEEec--Cc--ccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKTI--SG--IKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~~--~~--~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~ 285 (634)
.. .+||.+. ..+|.+.+.+. +. .++|+++++++|++|++.++.+++..+.++|||||++|+..||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 33 6899988 66888887754 43 899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 365 (634)
.|||+++.+++||+|||++|+......++++||||+||||+|+|++++.++.+++++..++..+||.+||..|++++.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999888775689999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-----CCHHHHHHHHHHHHHHHHHhcCC--cceEEEEE-ecC-CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 366 AFLKK-----LSYKDVNILMIKSREIKELLSYQ--SSVKLNVK-LSD-KKIVNITIDMKQFFTITQHLVNRTILLSSKAL 436 (634)
Q Consensus 366 ~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~--~~~~i~i~-~~~-g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l 436 (634)
++... .+++.+.+|+.+||++|+.||.. ....+.++ +.+ |.++.+.|||++|+++++|+++++..+++++|
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 319 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKAL 319 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 88653 57889999999999999999994 44555555 344 78999999999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceE
Q psy8852 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGI 516 (634)
Q Consensus 437 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi 516 (634)
+.+++...+|+.|+|+||+|++|+|++.|++.||..+..+.||++|||+|||++|+.+++.+. ..++.+.|++|++|||
T Consensus 320 ~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~-~~~~~~~d~~~~~~~i 398 (602)
T PF00012_consen 320 KDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFR-VKDIKIIDVTPFSIGI 398 (602)
T ss_dssp HHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCS-STSSCESEBESSEEEE
T ss_pred ccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccc-cccccccccccccccc
Confidence 999999999999999999999999999999999988888999999999999999999988655 5688999999999999
Q ss_pred EEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCC
Q psy8852 517 ETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDAD 596 (634)
Q Consensus 517 ~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~ 596 (634)
+..++.+.+++++|+++|...+..|++..++|+.+.+.+|+|+.....+|..||++.+.++++.+.|.++|+|+|++|.+
T Consensus 399 ~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~ 478 (602)
T PF00012_consen 399 EVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDEN 478 (602)
T ss_dssp EETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETT
T ss_pred cccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeee
Confidence 99999999999999999999988899999999999999999999888999999999999999999999999999999999
Q ss_pred eeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 597 GLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 597 g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
|+|+|++.+..++.+..+++.....+++++++++.++
T Consensus 479 Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 515 (602)
T PF00012_consen 479 GILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKK 515 (602)
T ss_dssp SEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHH
T ss_pred eehhhhhcccccccccccccccccccccccccccccc
Confidence 9999999999999999999988877999999887653
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=508.47 Aligned_cols=467 Identities=29% Similarity=0.440 Sum_probs=421.0
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC--cc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN--IN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~--~~ 212 (634)
++|||||..+|.+|+...+..++|.|+.++|.+|++|+|.+.+ +++|..|..+...++.+++..+||++|+.+.+ ++
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~-R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKN-RFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeecccc-ceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 7999999999999999999999999999999999999998775 99999999999999999999999999999988 44
Q ss_pred cC--CCCeEEe-cCCCceEEEec----CcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKTI----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~~----~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~ 285 (634)
.. ++|+.++ ..||.+.+.++ ...++++++++|+|.+|+..+++.+..++.+|||+||+||++.||+++.+||+
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~ 161 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAAR 161 (727)
T ss_pred hcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHh
Confidence 44 6899999 88888887743 35899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhccCc------cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNI------FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 359 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~------~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 359 (634)
.|||+++++++|.+|+|++|+....+ ++.+++++|+|.+++.+|++.+..|.+.++++.++..+||++||+.|.
T Consensus 162 iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~ 241 (727)
T KOG0103|consen 162 IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALI 241 (727)
T ss_pred hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHH
Confidence 99999999999999999999987643 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEe-cCCceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q psy8852 360 SWIVKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-SDKKIVNITIDMKQFFTITQHLVNRTILLSS 433 (634)
Q Consensus 360 ~~l~~~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~-~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~ 433 (634)
+|+.++|+.+. .++++..||+..||+.|+.||.+....+.|++ .++.+.+..|+|++||+++.|+++++...+.
T Consensus 242 ~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~ 321 (727)
T KOG0103|consen 242 DHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLL 321 (727)
T ss_pred HHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHH
Confidence 99999999876 46888999999999999999999888888884 6889999999999999999999999999999
Q ss_pred HHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeecccc
Q psy8852 434 KALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLS 513 (634)
Q Consensus 434 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 513 (634)
++|+++++..+||+.|.+|||+||+|.|++.|+++||+...++.|.++|||+|||++++++++.++ .+.+.+.|+.|++
T Consensus 322 ~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~fr-VRef~v~Di~pys 400 (727)
T KOG0103|consen 322 KALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFR-VREFSVEDIVPYS 400 (727)
T ss_pred HHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCcccc-ceecceeccccee
Confidence 999999999999999999999999999999999999999999999999999999999999998887 7889999999999
Q ss_pred ceEEEec-----ceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecC-ccccccCceeeEEEEeCCCCCCC-CccE
Q psy8852 514 LGIETIG-----GLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGE-DELVKNCQVLANFELRDIPPMPA-GRAR 586 (634)
Q Consensus 514 ~gi~~~~-----~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~lg~~~l~~~~~~~~-g~~~ 586 (634)
+.+++.. +....+||+|.++|..+..+| .+.+. +.+..+.+. ...+.....|+++++.++.+... ...+
T Consensus 401 Is~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~--~Rk~~--F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~sk 476 (727)
T KOG0103|consen 401 ISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTF--NRKGP--FTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSK 476 (727)
T ss_pred EEEEeccccccCCCceeeecCCCCCCCceEEEE--EecCc--eEEEEEeccccccCCCCCceeeEEecccccCccccccc
Confidence 9988642 455679999999997766544 44444 444444443 55555677899999988877666 3457
Q ss_pred EEEEEEECCCeeEEEEEEEec
Q psy8852 587 IKVTYQVDADGLLSIFAYEKI 607 (634)
Q Consensus 587 i~v~~~~d~~g~l~v~~~~~~ 607 (634)
++|...++..|+.+|.-....
T Consensus 477 VKvkvr~n~~Gi~~i~sA~~~ 497 (727)
T KOG0103|consen 477 VKVKVRLNEHGIDTIESATLI 497 (727)
T ss_pred eeEEEEEcCccceeeecceee
Confidence 999999999999998765443
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=488.46 Aligned_cols=466 Identities=25% Similarity=0.354 Sum_probs=404.1
Q ss_pred ceEEEEEeCCceEEEEEEECCee-EEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIP-EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 211 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~-~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~ 211 (634)
..+++||+||.+++++++.+|.| +++.|..++|++|++|+|. +|++++|..|.....++|..++..++.+||++..+.
T Consensus 22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEec-CCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 46899999999999999999977 7888999999999999996 567999999999999999999999999999998872
Q ss_pred --c---cCCCCeEEe-c-CCCceEEEecC-cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q psy8852 212 --N---TNSFPYDFQ-N-KFGMLHIKTIS-GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA 283 (634)
Q Consensus 212 --~---~~~~~~~i~-~-~~~~~~~~~~~-~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a 283 (634)
. ..+++|+++ + ..+.+.|.+.+ ..++++++++|+|.+.+..|+.+...++.++|||||.+|++.+|+++.+|
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~A 180 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQA 180 (902)
T ss_pred HHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHH
Confidence 2 225678888 4 36888998877 69999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCc----cceEEEEEEeCCCeEEEEEEEEe----------CCeEEEEEEcCCCCc
Q psy8852 284 AKLAGLNVLRLLNEPTSAAIAYKLDKNI----FEGIFAVYDLGGGTFDISILKFK----------NGVFKVLSVGGDSNL 349 (634)
Q Consensus 284 a~~aGl~~~~li~Ep~AAa~~y~~~~~~----~~~~vlV~D~GggT~dvsv~~~~----------~~~~~v~~~~~~~~l 349 (634)
|++||++++.+|++-+|||+.|+..+++ .+.+++|||+|+|+|.++++.+. ...+.+++.+.+..+
T Consensus 181 a~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tL 260 (902)
T KOG0104|consen 181 AQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTL 260 (902)
T ss_pred HHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCcc
Confidence 9999999999999999999999998753 67899999999999999999883 147889999999999
Q ss_pred cchhHHHHHHHHHHHHHhhcc-------CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHH
Q psy8852 350 GGDDFDYCLFSWIVKNAFLKK-------LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTIT 421 (634)
Q Consensus 350 GG~~id~~l~~~l~~~~~~~~-------~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~ 421 (634)
||..|..+|.+++.+.|.... .+++++.+|.++|+++|..||.+..+.+.|+ +.++.|+..+|||++||++|
T Consensus 261 GG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc 340 (902)
T KOG0104|consen 261 GGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELC 340 (902)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHH
Confidence 999999999999999997654 5799999999999999999999999999998 68999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccC-CcCCCCChhhHHHHHHHHHHhHhcCCCCC
Q psy8852 422 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLTSIDPDKAVVFGAAIQANFLSGNRGI 500 (634)
Q Consensus 422 ~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~~~~~~p~~ava~GAa~~a~~~~~~~~~ 500 (634)
.++..++..+|+++|..++++..+|+.|+|+||++|+|.||+.|.++.|. ++....|.+||+++||+++|+.++..++
T Consensus 341 ~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksFK- 419 (902)
T KOG0104|consen 341 ADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFK- 419 (902)
T ss_pred HHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccccc-
Confidence 99999999999999999999999999999999999999999999999986 4567899999999999999999999998
Q ss_pred CCceeEeeeccccceEEEecc--------eeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEE
Q psy8852 501 DDNFLLLDVIPLSLGIETIGG--------LVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANF 572 (634)
Q Consensus 501 ~~~~~~~~~~~~~~gi~~~~~--------~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~ 572 (634)
.+++.+.|.+.++|-++..+. .-..+|+++.++|..+...|+-+.|+ +.+.+=.|.- . ..+..+
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~---~--~nl~~v 491 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDL---G--QNLTTV 491 (902)
T ss_pred ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhh---c--cCccEE
Confidence 778999999999988876543 22348999999999876666544443 2222211110 0 224466
Q ss_pred EEeCCCCC----CC---CccEEEEEEEECCCeeEEEEEEEecC
Q psy8852 573 ELRDIPPM----PA---GRARIKVTYQVDADGLLSIFAYEKIS 608 (634)
Q Consensus 573 ~l~~~~~~----~~---g~~~i~v~~~~d~~g~l~v~~~~~~~ 608 (634)
+++++... +. ...-|+++|.+|..|++.|+..+..+
T Consensus 492 elsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~ 534 (902)
T KOG0104|consen 492 ELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVF 534 (902)
T ss_pred EEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEE
Confidence 66665432 11 12349999999999999998866543
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=459.91 Aligned_cols=332 Identities=24% Similarity=0.294 Sum_probs=288.3
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEe----------------------------------------
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL---------------------------------------- 174 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~---------------------------------------- 174 (634)
++|||||||||++|++.+|.++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6899999999999999999999999999999999999994
Q ss_pred cCCcEEecHhHHhhhccCCCch--hhhhhhhcCCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHH
Q psy8852 175 PDGKIYVGKKAKITQNIDPKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 252 (634)
Q Consensus 175 ~~~~~~~G~~A~~~~~~~~~~~--i~~~k~~lg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~ 252 (634)
.++..++|..|...+..+|..+ +.++|++||...-.. .....++++++.+|++|++.
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~---------------------~~~~~~e~l~a~iL~~lk~~ 140 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP---------------------QQVALFEDLVCAMMLHIKQQ 140 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc---------------------cceeCHHHHHHHHHHHHHHH
Confidence 2445789999999999999888 789999999763210 12345899999999999999
Q ss_pred HHHHhCCCcCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCC
Q psy8852 253 AENAVNNRIFGAVITVPAYFN-----DIQRQF---TKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGG 324 (634)
Q Consensus 253 a~~~~~~~~~~~viTVPa~~~-----~~qr~~---l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~Ggg 324 (634)
++.++|.++.++|||||++|+ +.||++ +++||+.||++++.+++||+|||++|+.... .++.+||+|+|||
T Consensus 141 ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~vlV~D~GGG 219 (450)
T PRK11678 141 AEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKRVLVVDIGGG 219 (450)
T ss_pred HHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCeEEEEEeCCC
Confidence 999999999999999999998 777765 7999999999999999999999999987654 6788999999999
Q ss_pred eEEEEEEEEeCC-------eEEEEEEcCCCCccchhHHHHHH-HHHHHHHhhcc--------------------------
Q psy8852 325 TFDISILKFKNG-------VFKVLSVGGDSNLGGDDFDYCLF-SWIVKNAFLKK-------------------------- 370 (634)
Q Consensus 325 T~dvsv~~~~~~-------~~~v~~~~~~~~lGG~~id~~l~-~~l~~~~~~~~-------------------------- 370 (634)
|+|+|++++.++ ..+++++.| ..+||++||..|+ +++...|+...
T Consensus 220 T~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~~ 298 (450)
T PRK11678 220 TTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQS 298 (450)
T ss_pred eEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccchhh
Confidence 999999999654 367999988 6899999999998 57776664110
Q ss_pred ------------------CCHHHH------------HHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHH
Q psy8852 371 ------------------LSYKDV------------NILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTI 420 (634)
Q Consensus 371 ------------------~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~ 420 (634)
.+++.+ .+|+.+||++|+.||.+..+++.++.. +.++..+|||++|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~-~~~~~~~ItR~efe~i 377 (450)
T PRK11678 299 DFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFI-SDGLATEISQQGLEEA 377 (450)
T ss_pred hhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEeccc-CCCcceeeCHHHHHHH
Confidence 122222 368899999999999999999888753 3468899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 421 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 421 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
++++++++..+++++|+++++. ++.|+||||+|++|.|++.+++.||.......+|.++||.|+|++|..
T Consensus 378 i~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 378 ISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQV 447 (450)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHHh
Confidence 9999999999999999999875 589999999999999999999999876667789999999999999864
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=331.52 Aligned_cols=307 Identities=23% Similarity=0.311 Sum_probs=244.1
Q ss_pred EEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC-Cc-EEecHhHHhhhccCCCchhhhhhhhcCCCCCCccc
Q psy8852 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GK-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 213 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 213 (634)
+||||||++|+++.. ++..++. .||+|++..+ +. ..+|.+|+....+.|.+... .++
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~------~~p------ 64 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA------IRP------ 64 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE------Ecc------
Confidence 899999999999876 4445664 7999999854 23 47999997766555544321 011
Q ss_pred CCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceee
Q psy8852 214 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293 (634)
Q Consensus 214 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~ 293 (634)
..++.+...+++..+|+++.+.+..........+|||||++|+..+|+++++|++.||++.+.
T Consensus 65 -----------------i~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~ 127 (336)
T PRK13928 65 -----------------LRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVY 127 (336)
T ss_pred -----------------CCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceE
Confidence 112455666788888888886654322223346999999999999999999999999999999
Q ss_pred eecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCH
Q psy8852 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSY 373 (634)
Q Consensus 294 li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~ 373 (634)
+++||+|||++|+.... .+..++|||+||||||+++++.+... ..++.++||++||+.|.+++.++++... .
T Consensus 128 li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~~~~~~~-~- 199 (336)
T PRK13928 128 LIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYKLLI-G- 199 (336)
T ss_pred ecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHHHhchhc-C-
Confidence 99999999999988665 56678999999999999999876421 3457899999999999999998875432 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCc----ceEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcC
Q psy8852 374 KDVNILMIKSREIKELLSYQS----SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN--LTIK 444 (634)
Q Consensus 374 ~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~--~~~~ 444 (634)
...||++|+.++... ...+.+. +..|....++|+|++|++++.+.++++.+.+++.|+.++ +...
T Consensus 200 ------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~ 273 (336)
T PRK13928 200 ------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSAD 273 (336)
T ss_pred ------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHh
Confidence 257999999987542 2334432 234566789999999999999999999999999999986 3445
Q ss_pred CCC-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHh
Q psy8852 445 DIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 445 ~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~ 494 (634)
.++ .|+|+||+|++|.+++.|++.|+.++....||+++||+||++++..+
T Consensus 274 ~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 274 IIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred hcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 677 79999999999999999999999998888999999999999998654
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=328.36 Aligned_cols=305 Identities=24% Similarity=0.330 Sum_probs=247.8
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCc--EEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~--~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
.+||||||+++++ +.+++..++ + .||+|+++.++. ..+|.+|+....+.|.++... ++.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~~~-~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~------~pi---- 66 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGIIL-N------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV------RPM---- 66 (335)
T ss_pred eEEEEcccccEEE--EECCCcEEe-c------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE------ecC----
Confidence 4899999999975 455555444 2 599999986543 689999998887777665421 111
Q ss_pred cCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcC--cEEEEeCCCCCHHHHHHHHHHHHHcCCc
Q psy8852 213 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIF--GAVITVPAYFNDIQRQFTKNAAKLAGLN 290 (634)
Q Consensus 213 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~--~~viTVPa~~~~~qr~~l~~aa~~aGl~ 290 (634)
..+.+...++++.+|++++..++..++..+. .+|||||++|+..||+++.+|++.||++
T Consensus 67 -------------------~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~ 127 (335)
T PRK13929 67 -------------------KDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAK 127 (335)
T ss_pred -------------------CCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 1234556689999999999998877776554 7999999999999999999999999999
Q ss_pred eeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc
Q psy8852 291 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370 (634)
Q Consensus 291 ~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 370 (634)
.+.+++||+|||++|+.... .+..++|+|+||||||++++...+.. ..++..+||.+||+.|.+++.+.++...
T Consensus 128 ~~~li~ep~Aaa~~~g~~~~-~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~~~~~~ 201 (335)
T PRK13929 128 NVHLIEEPVAAAIGADLPVD-EPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKKYNLLI 201 (335)
T ss_pred eeEeecCHHHHHHhcCCCcC-CCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHHHHHHhCcCc
Confidence 99999999999999987655 56778999999999999999875421 3456789999999999999988765332
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCc----ceEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-
Q psy8852 371 LSYKDVNILMIKSREIKELLSYQS----SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT- 442 (634)
Q Consensus 371 ~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~- 442 (634)
+ ...||++|+.++... ...+.+. +..+....+++++++|++++.+.+.++.+.+++.|++++..
T Consensus 202 -~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l 273 (335)
T PRK13929 202 -G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPEL 273 (335)
T ss_pred -C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 1 267999999998732 2233332 23455678999999999999999999999999999998643
Q ss_pred -cCCCC-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 443 -IKDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 443 -~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
...++ .|+|+||+|++|.+.+++++.|+.++....||+++|+.||+..-
T Consensus 274 ~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 274 SGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred chhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 35567 69999999999999999999999998888999999999999874
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=311.07 Aligned_cols=306 Identities=23% Similarity=0.305 Sum_probs=236.2
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC-Cc-EEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GK-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
.|||||||++++++.. |+..++ .+||+|++.++ +. +.+|.+|.....+.|.++... .+
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------~p----- 66 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------RP----- 66 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE------ec-----
Confidence 5899999999998553 333344 38999999765 33 589999987766555433210 01
Q ss_pred cCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q psy8852 213 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 292 (634)
Q Consensus 213 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~ 292 (634)
..++.+.-.+.+..+++++......... ....+|+|||++|+..+|++++.|++.+|++.+
T Consensus 67 ------------------i~~G~i~d~~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~ 127 (334)
T PRK13927 67 ------------------MKDGVIADFDVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGAGAREV 127 (334)
T ss_pred ------------------CCCCeecCHHHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCee
Confidence 1122333345566677776665443322 223799999999999999999999999999999
Q ss_pred eeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCC
Q psy8852 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372 (634)
Q Consensus 293 ~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 372 (634)
.+++||+|||++|+.... ....++|+|+||||||+++++..+.. ..+...+||++||+.|.+++.++++... +
T Consensus 128 ~li~ep~aaa~~~g~~~~-~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~~~~-~ 200 (334)
T PRK13927 128 YLIEEPMAAAIGAGLPVT-EPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYNLLI-G 200 (334)
T ss_pred ccCCChHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhCcCc-C
Confidence 999999999999987654 55678999999999999999876532 2455789999999999999998775432 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcc----eEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--c
Q psy8852 373 YKDVNILMIKSREIKELLSYQSS----VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT--I 443 (634)
Q Consensus 373 ~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~--~ 443 (634)
...||++|+.++.... ..+.+. ...|.+..+.|+|++|++++.+.+.++.+.+.++|++++.. .
T Consensus 201 -------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~ 273 (334)
T PRK13927 201 -------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAA 273 (334)
T ss_pred -------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhh
Confidence 2568999999976432 334442 12456678899999999999999999999999999988643 2
Q ss_pred CCCC-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 444 KDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 444 ~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
..++ .|+|+||+|++|.++++|++.|+.++....||+++||+||++++..
T Consensus 274 ~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 274 DIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred hhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 2234 5999999999999999999999999888899999999999999764
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=309.54 Aligned_cols=306 Identities=25% Similarity=0.307 Sum_probs=233.3
Q ss_pred EEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC----Cc--EEecHhHHhhhccCCCchhhhhhhhcCCCCC
Q psy8852 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD----GK--IYVGKKAKITQNIDPKNTISSIKRFIARDLK 209 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~----~~--~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~ 209 (634)
+||||||++|+++....| .++ ..||+|++..+ .. +.+|.+|.....+.|.++. +++-+
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi----- 68 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPM----- 68 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecC-----
Confidence 899999999998875433 344 38999999754 22 6799999776555443332 11111
Q ss_pred CcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q psy8852 210 NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 289 (634)
Q Consensus 210 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl 289 (634)
.++.+...+.+..+++++.....+..+.....+|+|||++|+..+|+++++|++.+|+
T Consensus 69 ----------------------~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~ 126 (333)
T TIGR00904 69 ----------------------KDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGA 126 (333)
T ss_pred ----------------------CCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 1223333455666677766554432222223799999999999999999999999999
Q ss_pred ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhc
Q psy8852 290 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 369 (634)
+.+.+++||+|||++|+.... .+..++|+|+||||||+++++..+.. ..++..+||++||+.|.+++.++++..
T Consensus 127 ~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~~~~~ 200 (333)
T TIGR00904 127 REVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRTYNLL 200 (333)
T ss_pred CeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHHhccc
Confidence 999999999999999987554 56678999999999999999876522 245678999999999999998776432
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcc-----eEEEEEe---cCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy8852 370 KLSYKDVNILMIKSREIKELLSYQSS-----VKLNVKL---SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANL 441 (634)
Q Consensus 370 ~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~i~i~~---~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~ 441 (634)
. + +..||++|+.++.... ..+.+.. ..+....+.|+++++.+++.+.+.++.+.+.+.++.++.
T Consensus 201 ~-~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~ 272 (333)
T TIGR00904 201 I-G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPP 272 (333)
T ss_pred C-C-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 2 1 3679999999976432 2222211 123445678999999999999999999999999998874
Q ss_pred Cc-CCC-C-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 442 TI-KDI-N-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 442 ~~-~~i-~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
.. .++ + .|+|+||+|++|.+++.|++.|+.++....||+++||.||++++..
T Consensus 273 ~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 273 ELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred hhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 42 233 3 7999999999999999999999999988999999999999999653
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=302.82 Aligned_cols=307 Identities=23% Similarity=0.270 Sum_probs=238.6
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC-C-cEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-G-KIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-~-~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
.+||||||++|+++++.++ .++ .+||+|++..+ + ..++|.+|.......|.+.- ++
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~----------- 67 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI----------- 67 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee-----------
Confidence 3999999999999886433 233 26999999753 3 36899999876654443221 00
Q ss_pred cCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q psy8852 213 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 292 (634)
Q Consensus 213 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~ 292 (634)
.| ..++.+...+.+..+|+++.+.+..........+|+|+|++|+..+|+++.++++.+|++.+
T Consensus 68 ---~p-------------i~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~ 131 (335)
T PRK13930 68 ---RP-------------LKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREV 131 (335)
T ss_pred ---ec-------------CCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeE
Confidence 01 11233444567888888888766554444467899999999999999999999999999999
Q ss_pred eeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCC
Q psy8852 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372 (634)
Q Consensus 293 ~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 372 (634)
.+++||+|||++|+.... ....++|+|+||||||++++..+... ..+...+||.+||+.|.+++.++++... +
T Consensus 132 ~lv~ep~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~~~~~-~ 204 (335)
T PRK13930 132 YLIEEPMAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRRKYNLLI-G 204 (335)
T ss_pred EecccHHHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHHHhCCCC-C
Confidence 999999999999987654 44567999999999999999876422 2456899999999999999988765322 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcc----eEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--c
Q psy8852 373 YKDVNILMIKSREIKELLSYQSS----VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT--I 443 (634)
Q Consensus 373 ~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~--~ 443 (634)
...||++|+.++.... ..+.+. ...|....+.|++++|++++.+.++++.+.+.++|+.++.. .
T Consensus 205 -------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~ 277 (335)
T PRK13930 205 -------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAA 277 (335)
T ss_pred -------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhh
Confidence 2578999999976543 223332 12445568899999999999999999999999999987533 2
Q ss_pred CCCC-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 444 KDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 444 ~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
..++ .|+|+||+|++|.++++|++.|+.++....+|+++||.||++.+..
T Consensus 278 ~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 278 DIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 2345 4999999999999999999999999888889999999999999864
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=281.54 Aligned_cols=306 Identities=26% Similarity=0.316 Sum_probs=227.0
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC-c-EEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG-K-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~-~-~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
-+||||||+++.++. .++-.++. .||+|+++.+. + ..+|.+|.....+.|.+. .
T Consensus 3 ~igIDLGT~~t~i~~--~~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV--KGKGIVLN-------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------E 58 (326)
T ss_dssp EEEEEE-SSEEEEEE--TTTEEEEE-------EES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------E
T ss_pred ceEEecCcccEEEEE--CCCCEEEe-------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------E
Confidence 489999999998855 33333443 69999998753 2 569999965544444221 1
Q ss_pred cCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q psy8852 213 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 292 (634)
Q Consensus 213 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~ 292 (634)
+ ...+.++.+.-.+++..+|+++.+.+.......-..++++||+..++.+|+++.+|+..+|.+.+
T Consensus 59 -------~-------~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V 124 (326)
T PF06723_consen 59 -------V-------VRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKV 124 (326)
T ss_dssp -------E-------E-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEE
T ss_pred -------E-------EccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 1 11134567777889999999999988763233446799999999999999999999999999999
Q ss_pred eeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCC
Q psy8852 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372 (634)
Q Consensus 293 ~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 372 (634)
.+++||.|||+..+..-. .+...||+|+||||||++++...+ ++.+. ....||++||+.|.+|++++++...
T Consensus 125 ~li~ep~AaAiGaGl~i~-~~~g~miVDIG~GtTdiavislgg----iv~s~-si~~gG~~~DeaI~~~ir~~y~l~I-- 196 (326)
T PF06723_consen 125 YLIEEPIAAAIGAGLDIF-EPRGSMIVDIGGGTTDIAVISLGG----IVASR-SIRIGGDDIDEAIIRYIREKYNLLI-- 196 (326)
T ss_dssp EEEEHHHHHHHHTT--TT-SSS-EEEEEE-SS-EEEEEEETTE----EEEEE-EES-SHHHHHHHHHHHHHHHHSEE---
T ss_pred EEecchHHHHhcCCCCCC-CCCceEEEEECCCeEEEEEEECCC----EEEEE-EEEecCcchhHHHHHHHHHhhCccc--
Confidence 999999999999988876 667789999999999999996543 22222 3688999999999999999996443
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcc----eEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-C
Q psy8852 373 YKDVNILMIKSREIKELLSYQSS----VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTI-K 444 (634)
Q Consensus 373 ~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~-~ 444 (634)
=...||++|+.++.... ..+.+. +.+|....+.|+.+++.+++.+.+.++.+.++++|++..... .
T Consensus 197 ------g~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~ 270 (326)
T PF06723_consen 197 ------GERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAA 270 (326)
T ss_dssp -------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred ------CHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 12678999999876432 345553 467889999999999999999999999999999999865331 2
Q ss_pred CC--CeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHh
Q psy8852 445 DI--NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 445 ~i--~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 492 (634)
|| ++|+|+||+|+++.+.+.|++.++.++....||..+||.||.....
T Consensus 271 DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 271 DILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 33 6799999999999999999999999999999999999999997654
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=244.93 Aligned_cols=309 Identities=24% Similarity=0.297 Sum_probs=245.1
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC----cEEecHhHHhhhccCCCchhhhhhhhcCCCCCC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG----KIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 210 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~----~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~ 210 (634)
.+|||+||.||.++.- |+--++ .-||+|++..++ -..+|.+| |+++|+...+
T Consensus 8 diGIDLGTanTlV~~k--~kgIVl-------~ePSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~n 63 (342)
T COG1077 8 DIGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPGN 63 (342)
T ss_pred cceeeecccceEEEEc--CceEEe-------cCceEEEEeecCCCceEEEehHHH---------------HHHhccCCCC
Confidence 5899999999998764 332244 379999998732 15789999 6667766544
Q ss_pred cccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhC-CCcCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q psy8852 211 INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVN-NRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 289 (634)
Q Consensus 211 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~-~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl 289 (634)
+... -...++.+.-.+++..+++|+++......+ ....+++++||..-++-+|+++++|++.||.
T Consensus 64 i~ai--------------RPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa 129 (342)
T COG1077 64 IVAI--------------RPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGA 129 (342)
T ss_pred ceEE--------------eecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccC
Confidence 2111 113346777788999999999998765433 3444799999999999999999999999999
Q ss_pred ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhc
Q psy8852 290 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 369 (634)
..+.++.||.|||+..+..-. .+..-+|+|+||||||++++.+.+-. . +....+||+.||+.+.+|+.++|+.-
T Consensus 130 ~~V~lieEp~aAAIGaglpi~-ep~G~mvvDIGgGTTevaVISlggiv----~-~~Sirv~GD~~De~Ii~yvr~~~nl~ 203 (342)
T COG1077 130 REVYLIEEPMAAAIGAGLPIM-EPTGSMVVDIGGGTTEVAVISLGGIV----S-SSSVRVGGDKMDEAIIVYVRKKYNLL 203 (342)
T ss_pred ceEEEeccHHHHHhcCCCccc-CCCCCEEEEeCCCceeEEEEEecCEE----E-EeeEEEecchhhHHHHHHHHHHhCee
Confidence 999999999999998877665 44456899999999999999988732 2 33478999999999999999999865
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcc------eEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy8852 370 KLSYKDVNILMIKSREIKELLSYQSS------VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN 440 (634)
Q Consensus 370 ~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~ 440 (634)
.- -..+|++|........ .++.+. +..|..-.++++.+++.+.+++.++.|.+.++..|++..
T Consensus 204 IG--------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tp 275 (342)
T COG1077 204 IG--------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTP 275 (342)
T ss_pred ec--------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 41 1347888888754322 234443 356778889999999999999999999999999999875
Q ss_pred CC--cCCCC-eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhc
Q psy8852 441 LT--IKDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 441 ~~--~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~ 495 (634)
.. .+-++ .++|+||+|.+..+.+.+++..+.++....+|..|||.|+......+.
T Consensus 276 PeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 276 PELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred chhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 33 22234 499999999999999999999999999999999999999998876553
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=251.70 Aligned_cols=205 Identities=23% Similarity=0.320 Sum_probs=176.5
Q ss_pred cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccc
Q psy8852 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 313 (634)
Q Consensus 234 ~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~ 313 (634)
+.+...+.++.+|+++++.++..++.++.++|+|||++|++.||+++.+|++.||++.+.++.||.|||++|...
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----- 108 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----- 108 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----
Confidence 355566889999999999998888988999999999999999999999999999999999999999999998643
Q ss_pred eEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC
Q psy8852 314 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ 393 (634)
Q Consensus 314 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 393 (634)
..+|+|+||||||+++++.+. ++. ..+..+||++||+.|.+.+. .. +.+||++|+.++
T Consensus 109 -~~~vvDiGggtt~i~i~~~G~----i~~-~~~~~~GG~~it~~Ia~~~~----i~----------~~~AE~~K~~~~-- 166 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILKKGK----VIY-SADEPTGGTHMSLVLAGAYG----IS----------FEEAEEYKRGHK-- 166 (239)
T ss_pred -CcEEEEeCCCcEEEEEEECCe----EEE-EEeeecchHHHHHHHHHHhC----CC----------HHHHHHHHHhcC--
Confidence 259999999999999976433 222 34578999999998875432 22 378899998754
Q ss_pred cceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCc
Q psy8852 394 SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473 (634)
Q Consensus 394 ~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 473 (634)
+.+++.+++.++++++.+.+++.|++. .++.|+|+||+|++|++++.+++.||.++
T Consensus 167 -------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~lg~~v 222 (239)
T TIGR02529 167 -------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQLGLNV 222 (239)
T ss_pred -------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHhCCCc
Confidence 246778899999999999999999864 46799999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHH
Q psy8852 474 LTSIDPDKAVVFGAAI 489 (634)
Q Consensus 474 ~~~~~p~~ava~GAa~ 489 (634)
..+.||++++|.|||+
T Consensus 223 ~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 223 IKPQHPLYVTPLGIAM 238 (239)
T ss_pred ccCCCCCeehhheeec
Confidence 9999999999999986
|
|
| >PRK01773 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=240.19 Aligned_cols=115 Identities=39% Similarity=0.603 Sum_probs=106.2
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhc-CCC
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN-GID 79 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~-~~~ 79 (634)
|+|||++||||++|++|...|+++|++||+++|||+|+++++.++..+.++++.||+||+||+||.+||.|+|.|+ |.+
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~ 80 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQ 80 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999 877
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHhhcchhhhH
Q psy8852 80 LNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKF 115 (634)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~~~~~ 115 (634)
...+.++..|++|||++|||||+|+++.+..+...+
T Consensus 81 ~~~e~~~~~d~~fLme~ME~rE~lee~~~~~d~~~L 116 (173)
T PRK01773 81 QNLEEKSTQDMAFLMQQMEWREQLEEIEQQQDEDAL 116 (173)
T ss_pred CCcccccCCCHHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 666667888999999999999999998765543333
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=237.08 Aligned_cols=202 Identities=24% Similarity=0.320 Sum_probs=174.7
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEE
Q psy8852 239 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAV 318 (634)
Q Consensus 239 ~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV 318 (634)
.+.+...|+++++.++..++.++..++++||++|+..++.++.++++.||++...++.||.|++.+|.... .++
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~~------~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDN------GAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCCC------cEE
Confidence 56778899999999999888889999999999999999999999999999999999999999999875431 589
Q ss_pred EEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEE
Q psy8852 319 YDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 398 (634)
Q Consensus 319 ~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 398 (634)
+|+||||||+++++- +.+ .. .++.++||++||+.|++++. .. +.+||++|+.++
T Consensus 140 vDIGggtt~i~v~~~--g~~--~~-~~~~~~GG~~it~~Ia~~l~----i~----------~~eAE~lK~~~~------- 193 (267)
T PRK15080 140 VDIGGGTTGISILKD--GKV--VY-SADEPTGGTHMSLVLAGAYG----IS----------FEEAEQYKRDPK------- 193 (267)
T ss_pred EEeCCCcEEEEEEEC--CeE--EE-EecccCchHHHHHHHHHHhC----CC----------HHHHHHHHhccC-------
Confidence 999999999999753 332 22 34689999999999987642 11 367889887753
Q ss_pred EEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCC
Q psy8852 399 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 478 (634)
Q Consensus 399 ~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~ 478 (634)
+++++.++++++++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.||.++..+.+
T Consensus 194 --------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~ 254 (267)
T PRK15080 194 --------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQH 254 (267)
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHhCCCcccCCC
Confidence 357899999999999999999999864 5789999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHH
Q psy8852 479 PDKAVVFGAAIQA 491 (634)
Q Consensus 479 p~~ava~GAa~~a 491 (634)
|+.++|.|||+++
T Consensus 255 P~~~~a~Gaa~~~ 267 (267)
T PRK15080 255 PLFVTPLGIALSC 267 (267)
T ss_pred chHHHHHHHHhhC
Confidence 9999999999874
|
|
| >PRK03578 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=230.35 Aligned_cols=110 Identities=34% Similarity=0.643 Sum_probs=103.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
+|||++||||++|++|..+|+++||+||+++|||++++.++.++..+.++++.||+||+||+||.+|+.|+|.|+|+++.
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~~~ 85 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQ 85 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCCCc
Confidence 59999999999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcch
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~ 111 (634)
.+.++..|++|||++|||||+|+++.+..+
T Consensus 86 ~e~~~~~d~~fLme~mE~rE~lee~~~~~d 115 (176)
T PRK03578 86 AENNTAMPPAFLMQQMEWREAIEDARAARD 115 (176)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 777788899999999999999999875443
|
|
| >PRK00294 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-28 Score=223.47 Aligned_cols=112 Identities=31% Similarity=0.517 Sum_probs=103.4
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
+|||++||||++|++|..+|+++||+||+++|||++++.++.++..+.++|+.||+||+||+||.+|+.|+|.|.|+.+.
T Consensus 4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~~ 83 (173)
T PRK00294 4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHEVP 83 (173)
T ss_pred CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCC
Confidence 69999999999999999999999999999999999999998899999999999999999999999999999999999887
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcchhhh
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVK 114 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~~~~ 114 (634)
.+ .+..|++|||++|||||+|+++.+..+...
T Consensus 84 ~~-~~~~d~~fLme~me~rE~le~~~~~~d~~~ 115 (173)
T PRK00294 84 LE-VTVHDPEFLLQQMQLREELEELQDEADLAG 115 (173)
T ss_pred cc-cCCCCHHHHHHHHHHHHHHHhhcccccHHH
Confidence 64 466799999999999999999987655333
|
|
| >PRK05014 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-28 Score=223.31 Aligned_cols=110 Identities=36% Similarity=0.617 Sum_probs=102.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
+|||++||||++|++|..+|+++||++|+++|||++++.++.++..+.++|+.||+||++|+||.+|+.|+|.|.|.++.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~ 80 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA 80 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCCccc
Confidence 59999999999999999999999999999999999998888888889999999999999999999999999999999988
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcch
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~ 111 (634)
.+..+..|++|||++|||+|+|+++.+..+
T Consensus 81 ~~~~~~~d~efLme~me~rE~le~~~~~~d 110 (171)
T PRK05014 81 HEQHTVRDTAFLMEQMELREELEDIEQSKD 110 (171)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHhhccccC
Confidence 776777899999999999999999876554
|
|
| >PRK01356 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-28 Score=220.07 Aligned_cols=107 Identities=32% Similarity=0.465 Sum_probs=96.8
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCC
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDL 80 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~ 80 (634)
|+|||++||||++|++|..+|+++||+||+++|||++++ ..++..+.++|+.||+||+||+||.+|+.|+|.|+|+.+
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~--~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~~~ 78 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT--LQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNINL 78 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCCCC
Confidence 889999999999999999999999999999999999864 456666778999999999999999999999999999998
Q ss_pred cccc-ccCCCHHHHHHHHHHHHHHHHHhhc
Q psy8852 81 NTKL-NLNFSHDFLEQQMKWRETLSIIKNK 109 (634)
Q Consensus 81 ~~~~-~~~~~~~~l~~~~e~~e~~~~~~~~ 109 (634)
..+. ++.+|++|||++|||+|+++++.+.
T Consensus 79 ~~~~~~~~~d~~fLme~me~rE~le~~~~~ 108 (166)
T PRK01356 79 NDEKTRSLLSPLELSIFWDEMERIENTILF 108 (166)
T ss_pred CCccccccCCHHHHHHHHHHHHHHHcCCCH
Confidence 7763 4678999999999999999988543
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=218.12 Aligned_cols=195 Identities=17% Similarity=0.242 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchh
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 353 (634)
....+.+.+|++.||+++..++.||.|+|++|..... ....++|+|+||||||+++++. +.... .....+||++
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-~~~~~~vvDiG~gtt~i~i~~~--g~~~~---~~~i~~GG~~ 230 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-KELGVCLIDIGGGTTDIAVYTG--GSIRY---TKVIPIGGNH 230 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-hcCCEEEEEeCCCcEEEEEEEC--CEEEE---EeeecchHHH
Confidence 4566788899999999999999999999999865433 5667999999999999999863 33211 3347899999
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC------cceEEEEEecCCceeEEEEeHHHHHHHHHHHHHH
Q psy8852 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ------SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR 427 (634)
Q Consensus 354 id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~ 427 (634)
||+.+.+.+ ...+.+||++|+.++.. ....+.++.. +.+....++|++|++++++.+++
T Consensus 231 it~~i~~~l--------------~~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~is~~~l~~ii~~~~~e 295 (371)
T TIGR01174 231 ITKDIAKAL--------------RTPLEEAERIKIKYGCASIPLEGPDENIEIPSV-GERPPRSLSRKELAEIIEARAEE 295 (371)
T ss_pred HHHHHHHHh--------------CCCHHHHHHHHHHeeEecccCCCCCCEEEeccC-CCCCCeEEcHHHHHHHHHHHHHH
Confidence 999987532 22357899999999864 2345555432 34667899999999999999999
Q ss_pred HHHHHH-HHHHHcCCCcCCCCe-EEEEcCCcCcHHHHHHHHhhccCCcCC------------CCChhhHHHHHHHHH
Q psy8852 428 TILLSS-KALMDANLTIKDINN-VILVGGSTRMKHIHEGVSNFFKTTLLT------------SIDPDKAVVFGAAIQ 490 (634)
Q Consensus 428 ~~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~~~------------~~~p~~ava~GAa~~ 490 (634)
+...++ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+.++.. ..+|..++|.|.++|
T Consensus 296 i~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 296 ILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 999997 999998876 56776 999999999999999999999875421 137889999998864
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >TIGR00714 hscB Fe-S protein assembly co-chaperone HscB | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-24 Score=193.34 Aligned_cols=100 Identities=38% Similarity=0.601 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCccccccCCCHHHH
Q psy8852 14 FNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFL 93 (634)
Q Consensus 14 ~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~~~~~~~~~~~~l 93 (634)
|++|..+|+++||+||+++|||+|++.++.++..+.++|+.||+||+||+||.+|+.|+|.|+|+.+..+.++..|++||
T Consensus 1 f~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~~~~~e~~~~~d~~fL 80 (157)
T TIGR00714 1 YQLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGIDLASEQHSVRDTAFL 80 (157)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCCcccCCCCCHHHH
Confidence 67899999999999999999999999888888889999999999999999999999999999999988777778899999
Q ss_pred HHHHHHHHHHHHHhhcchhh
Q psy8852 94 EQQMKWRETLSIIKNKKDKV 113 (634)
Q Consensus 94 ~~~~e~~e~~~~~~~~~~~~ 113 (634)
|++|+|+|.++++.+..+..
T Consensus 81 me~Me~rE~lee~~~~~d~~ 100 (157)
T TIGR00714 81 MEQLELREELDEIEQAKDEA 100 (157)
T ss_pred HHHHHHHHHHHHHHhCCCHH
Confidence 99999999999987665433
|
This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=211.41 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=149.9
Q ss_pred HHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHH
Q psy8852 277 RQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDY 356 (634)
Q Consensus 277 r~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 356 (634)
.+.+.+|++.||+++..++.||.|+|.++..... .+..++|+|+||||||+++++ ++.+ ......++||+++++
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e-~~~gv~vvDiGggtTdisv~~--~G~l---~~~~~i~~GG~~it~ 241 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE-RELGVCVVDIGGGTMDIAVYT--GGAL---RHTKVIPYAGNVVTS 241 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh-hhcCeEEEEeCCCceEEEEEE--CCEE---EEEeeeechHHHHHH
Confidence 3444679999999999999999999999865543 567799999999999999996 3332 123447899999999
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC------cceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHH
Q psy8852 357 CLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ------SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 430 (634)
Q Consensus 357 ~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~ 430 (634)
.|...+. . .+..||++|+.+... ....+.++..++. ....+++.+|.+++.+.++++.+
T Consensus 242 dIa~~l~----i----------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~-~~~~i~~~~l~~ii~~r~~ei~~ 306 (420)
T PRK09472 242 DIAYAFG----T----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR-PPRSLQRQTLAEVIEPRYTELLN 306 (420)
T ss_pred HHHHHhC----c----------CHHHHHHHHHhcceeccccCCCCceeEecCCCCC-CCeEEcHHHHHHHHHHHHHHHHH
Confidence 9875442 1 247899999775432 2345555533332 23588999999999997777777
Q ss_pred HHHH-------HHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCC------------CCChhhHHHHHHHHHH
Q psy8852 431 LSSK-------ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT------------SIDPDKAVVFGAAIQA 491 (634)
Q Consensus 431 ~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~------------~~~p~~ava~GAa~~a 491 (634)
.+++ .+...++....++.|+|+||+|++|.+++.+++.|+.++.. ..+|..++|.|+++|+
T Consensus 307 ~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~ 386 (420)
T PRK09472 307 LVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYG 386 (420)
T ss_pred HHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHh
Confidence 7765 44666777677899999999999999999999999865432 2489999999999997
Q ss_pred h
Q psy8852 492 N 492 (634)
Q Consensus 492 ~ 492 (634)
.
T Consensus 387 ~ 387 (420)
T PRK09472 387 K 387 (420)
T ss_pred h
Confidence 6
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-18 Score=174.22 Aligned_cols=320 Identities=18% Similarity=0.194 Sum_probs=217.3
Q ss_pred eEEEEEeCCceEEEEEEE--CC-eeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC
Q psy8852 134 VSIGIDFGTTNSLVAIVR--NN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 210 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~--~g-~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~ 210 (634)
+++|+|+||+.+++.+.. ++ ...++.- ...||-- . ++| ...--++..+.. ...+....++.|....+
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~----g~~~SrG-i-k~G-~I~di~~~~~sI---~~av~~AE~mag~~i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGV----GSHPSRG-I-KKG-VIVDLDAAAQSI---KKAVEAAERMAGCEIKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEee----ecccCcc-c-ccc-eEEcHHHHHHHH---HHHHHHHHHhcCCCcce
Confidence 799999999999977765 44 5666641 1222221 1 123 344333333222 23455566666776554
Q ss_pred cccCCCCe-EEecCCCceEEEecC-cccCHHhHHHHHHHHHHHHHHHHhCCCcCc-------------------------
Q psy8852 211 INTNSFPY-DFQNKFGMLHIKTIS-GIKSPIEISAQIFITLKKIAENAVNNRIFG------------------------- 263 (634)
Q Consensus 211 ~~~~~~~~-~i~~~~~~~~~~~~~-~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~------------------------- 263 (634)
+-.. ++- .+...+..-.+.+.+ +.++.+++-..+ +.|......+-..
T Consensus 77 v~vs-~sG~~i~s~~~~g~v~i~~~~eIt~~DI~rvl-----~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~gm~G 150 (418)
T COG0849 77 VIVS-LSGNHIKSQNVNGEVSISEEKEITQEDIERVL-----EAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPLGMSG 150 (418)
T ss_pred EEEE-eccceeEEEeeEEEEEcCCCCccCHHHHHHHH-----HHHHhhccCCCceEEEEeeeEEEECCccccCCcccccc
Confidence 2111 000 000111112222334 677777776333 3333222111122
Q ss_pred -------EEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCC
Q psy8852 264 -------AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNG 336 (634)
Q Consensus 264 -------~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 336 (634)
.++|+| ..--+.+.+|.+.+|+++..++.+|.|+|.+...+.. ++-.++++|+||||||+++++-+.
T Consensus 151 ~rL~v~vhvit~~----~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE-kelGv~lIDiG~GTTdIai~~~G~- 224 (418)
T COG0849 151 VRLEVEVHVITGP----KNILENLEKCVERAGLKVDNIVLEPLASALAVLTEDE-KELGVALIDIGGGTTDIAIYKNGA- 224 (418)
T ss_pred ceEEEEEEEEEcc----hHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc-HhcCeEEEEeCCCcEEEEEEECCE-
Confidence 445555 3445778999999999999999999999997766555 778899999999999999987553
Q ss_pred eEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcc------eEEEEEecCCceeEE
Q psy8852 337 VFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSS------VKLNVKLSDKKIVNI 410 (634)
Q Consensus 337 ~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~~~~g~~~~~ 410 (634)
+.+.+..++||++++..|..-|.-. +..||+.|..+..... ..+.++.. |.+...
T Consensus 225 ----l~~~~~ipvgG~~vT~DIa~~l~t~--------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~v-g~~~~~ 285 (418)
T COG0849 225 ----LRYTGVIPVGGDHVTKDIAKGLKTP--------------FEEAERIKIKYGSALISLADDEETIEVPSV-GSDIPR 285 (418)
T ss_pred ----EEEEeeEeeCccHHHHHHHHHhCCC--------------HHHHHHHHHHcCccccCcCCCcceEecccC-CCcccc
Confidence 2234558999999999998644433 3789999999855432 34555432 333478
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCC------------CCC
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT------------SID 478 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~------------~~~ 478 (634)
.+|+.++.+++++.+.++..+++..|++.+....-...|+|+||++.+|++.+..++.|+.++.. ..+
T Consensus 286 ~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~ 365 (418)
T COG0849 286 QVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARN 365 (418)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccC
Confidence 89999999999999999999999999999987666799999999999999999999999764321 246
Q ss_pred hhhHHHHHHHHHHhHh
Q psy8852 479 PDKAVVFGAAIQANFL 494 (634)
Q Consensus 479 p~~ava~GAa~~a~~~ 494 (634)
|..+.|.|..+++...
T Consensus 366 p~fs~avGl~~~~~~~ 381 (418)
T COG0849 366 PAFSTAVGLLLYGALM 381 (418)
T ss_pred chhhhhHHHHHHHhhc
Confidence 8999999999998753
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=161.17 Aligned_cols=197 Identities=24% Similarity=0.337 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCC
Q psy8852 244 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGG 323 (634)
Q Consensus 244 ~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~Gg 323 (634)
.+.+.+++.+++++|..++...-++|..-.....+...+..+.||++++.+++||+|||.-..++.. .|+|+||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------~VVDiGG 149 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------GVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------cEEEeCC
Confidence 4678899999999999999999999999877778888899999999999999999999987766655 6999999
Q ss_pred CeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec
Q psy8852 324 GTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLS 403 (634)
Q Consensus 324 gT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~ 403 (634)
|||-+|+++-++-.| ..|.+-||.++...|+- .+..-+++||+.|..-..
T Consensus 150 GTTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG--------------~ygi~~EeAE~~Kr~~k~----------- 199 (277)
T COG4820 150 GTTGISIVKKGKVIY-----SADEPTGGTHMTLVLAG--------------NYGISLEEAEQYKRGHKK----------- 199 (277)
T ss_pred CcceeEEEEcCcEEE-----eccCCCCceeEEEEEec--------------ccCcCHhHHHHhhhcccc-----------
Confidence 999999998776443 55688999998877652 122224667776654211
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHH
Q psy8852 404 DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 483 (634)
Q Consensus 404 ~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~av 483 (634)
.+|.--.+.|+++++.+.+.+.++..+ +.-+.|+||+|.-|.+.+.+++.|+.++..+..|....
T Consensus 200 ----------~~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~T 264 (277)
T COG4820 200 ----------GEEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMT 264 (277)
T ss_pred ----------chhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhccccccCCCcceec
Confidence 123334568999999999999998765 56899999999999999999999999999999998888
Q ss_pred HHHHHHHH
Q psy8852 484 VFGAAIQA 491 (634)
Q Consensus 484 a~GAa~~a 491 (634)
-.|-|+.+
T Consensus 265 PLgIA~sg 272 (277)
T COG4820 265 PLGIASSG 272 (277)
T ss_pred hhhhhhcc
Confidence 88877654
|
|
| >KOG3192|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=152.73 Aligned_cols=110 Identities=34% Similarity=0.533 Sum_probs=98.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
.+||.+||....+.+++..++-.|...++++|||+-......+...+.+.+..+|+||.||+||++||.|++.|+|++..
T Consensus 8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~~ 87 (168)
T KOG3192|consen 8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQEQT 87 (168)
T ss_pred HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCc
Confidence 47999999999999999999999999999999999877776677788899999999999999999999999999999887
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcchh
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKDK 112 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~~ 112 (634)
+++.+. ||+|||++|+.+|.|.+.....+.
T Consensus 88 sne~st-Dpe~Lmevle~~E~IS~~~De~~l 117 (168)
T KOG3192|consen 88 SNELST-DPEFLMEVLEYHEAISEMDDEEDL 117 (168)
T ss_pred hhhhcc-CHHHHHHHHHHHHHHHhccCcHHH
Confidence 765444 999999999999999998766553
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=173.99 Aligned_cols=300 Identities=18% Similarity=0.189 Sum_probs=197.4
Q ss_pred EEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC---------CcEEecHhHHhhhccCCCchhhhhhhhcCC
Q psy8852 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD---------GKIYVGKKAKITQNIDPKNTISSIKRFIAR 206 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~ 206 (634)
|.||+||.++++++..++.|..+ +||+++...+ ....+|.+|...... ...+
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~~~~---------- 62 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-GLEL---------- 62 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC-ceEE----------
Confidence 78999999999999876655443 6788776533 246778777432210 0000
Q ss_pred CCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH-HHH
Q psy8852 207 DLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN-AAK 285 (634)
Q Consensus 207 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~-aa~ 285 (634)
..|+ .++.+.-.+.+..+++++...... ....-..+++++|..++..+|+.+.+ +++
T Consensus 63 --------~~P~-------------~~G~i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe 120 (371)
T cd00012 63 --------IYPI-------------EHGIVVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFE 120 (371)
T ss_pred --------cccc-------------cCCEEeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhc
Confidence 1121 123444556777788877754321 12234679999999999888888766 577
Q ss_pred HcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 365 (634)
..|++.+.++++|.+|+++++. .+.+|+|+|+++|+++.+.- |.. +.......++||.++|+.|.+++..+
T Consensus 121 ~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~~--G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~ 191 (371)
T cd00012 121 TFNVPALYVAIQAVLSLYASGR------TTGLVVDSGDGVTHVVPVYD--GYV-LPHAIKRLDLAGRDLTRYLKELLRER 191 (371)
T ss_pred cCCCCEEEEechHHHHHHhcCC------CeEEEEECCCCeeEEEEEEC--CEE-chhhheeccccHHHHHHHHHHHHHhc
Confidence 7899999999999999998864 46699999999999987653 322 22223347899999999999988765
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHhcCCcc---------------eEEEEEecCCceeEEEEeHHHHHHHHHHHH-----
Q psy8852 366 AFLKKLSYKDVNILMIKSREIKELLSYQSS---------------VKLNVKLSDKKIVNITIDMKQFFTITQHLV----- 425 (634)
Q Consensus 366 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------------~~i~i~~~~g~~~~~~itr~~~e~~~~~~~----- 425 (634)
... . + ...-...++.+|+.+..... ......+.+|.. +.++.+.| .+.+.++
T Consensus 192 ~~~-~-~---~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~--i~~~~er~-~~~E~lF~p~~~ 263 (371)
T cd00012 192 GYE-L-N---SSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRT--IKVGNERF-RAPEILFNPSLI 263 (371)
T ss_pred CCC-c-c---chhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeE--EEEChHHh-hChHhcCChhhc
Confidence 421 0 0 01123446666766533211 112233344443 44454433 3333333
Q ss_pred ----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhccC----------CcCCCCChhhHHHHHHHH
Q psy8852 426 ----NRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT----------TLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 426 ----~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~----------~~~~~~~p~~ava~GAa~ 489 (634)
..+.+.|.++++.+..+ ..-.+.|+|+||+|++|.+.++|.+.+.. .+....+|..++-.||++
T Consensus 264 ~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si 343 (371)
T cd00012 264 GSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSI 343 (371)
T ss_pred CCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchh
Confidence 36788888888876533 22357899999999999999999988752 123457889999999999
Q ss_pred HHhH
Q psy8852 490 QANF 493 (634)
Q Consensus 490 ~a~~ 493 (634)
+|..
T Consensus 344 ~as~ 347 (371)
T cd00012 344 LASL 347 (371)
T ss_pred hcCc
Confidence 9864
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-18 Score=171.06 Aligned_cols=69 Identities=26% Similarity=0.426 Sum_probs=60.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 79 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~ 79 (634)
+|||++|||+++|+ .+|||+|||+||++||||+++. .+.|+++|++|||||++||||.+|+.|+. +|..
T Consensus 4 ~dyYeiLGV~k~As--~~EIKkAYRkLA~kyHPD~n~g-----~~~AeeKFKEI~eAYEVLsD~eKRa~YD~--fG~~ 72 (371)
T COG0484 4 RDYYEILGVSKDAS--EEEIKKAYRKLAKKYHPDRNPG-----DKEAEEKFKEINEAYEVLSDPEKRAAYDQ--FGHA 72 (371)
T ss_pred cchhhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCC-----CHHHHHHHHHHHHHHHHhCCHHHHHHhhc--cCcc
Confidence 69999999999655 7799999999999999999775 23478999999999999999999999985 4543
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-17 Score=171.42 Aligned_cols=303 Identities=18% Similarity=0.220 Sum_probs=193.5
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC--------cEEecHhHHhhhccCCCchhhhhhhhcCC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG--------KIYVGKKAKITQNIDPKNTISSIKRFIAR 206 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~--------~~~~G~~A~~~~~~~~~~~i~~~k~~lg~ 206 (634)
.|+||+||.++++++..+..|.++ +||+|+...++ ...+|.+|...... . . +
T Consensus 3 ~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~----~--~----~-- 62 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGG----L--E----L-- 62 (373)
T ss_pred eEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcCCC----c--e----e--
Confidence 589999999999999876666554 78888876443 24677776321100 0 0 0
Q ss_pred CCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH-H
Q psy8852 207 DLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAA-K 285 (634)
Q Consensus 207 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa-~ 285 (634)
..|+ .++.+.-.+.+..+++++...... ....-..+++|.|...+..+|+.+.+.+ +
T Consensus 63 --------~~P~-------------~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~~e~lfE 120 (373)
T smart00268 63 --------KYPI-------------EHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKILEIMFE 120 (373)
T ss_pred --------cCCC-------------cCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHHHHHhhc
Confidence 1121 234555677888888888764211 1123357999999999899999988876 5
Q ss_pred HcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 365 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~ 365 (634)
..|++.+.++++|.+|+++++ ..+.+|+|+|+++|+++.+. +|.. +.......++||.++|+.|.+++...
T Consensus 121 ~~~~~~v~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~ 191 (373)
T smart00268 121 TFNFPALYIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLTDYLKELLSER 191 (373)
T ss_pred cCCCCeEEEeccHHHHHHhCC------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHHHHHHHHHHhc
Confidence 679999999999999999886 34679999999999999776 3322 22222346899999999999888762
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHhcCC-----------------cceEEEEEecCCceeEEEEeHHHHH-HHHHHH---
Q psy8852 366 AFLKKLSYKDVNILMIKSREIKELLSYQ-----------------SSVKLNVKLSDKKIVNITIDMKQFF-TITQHL--- 424 (634)
Q Consensus 366 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------------~~~~i~i~~~~g~~~~~~itr~~~e-~~~~~~--- 424 (634)
-. .. +. ..-...++.+|+.+... ........+.+|..+.+...|-..- .++.|.
T Consensus 192 ~~-~~-~~---~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~ 266 (373)
T smart00268 192 GY-QF-NS---SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFKPELIG 266 (373)
T ss_pred CC-CC-Cc---HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCEEEEChHHeeCchhcCCchhcC
Confidence 10 00 10 11123455555554221 1112233445666554432222221 222221
Q ss_pred --HHHHHHHHHHHHHHcCCCc--CCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHHHHHh
Q psy8852 425 --VNRTILLSSKALMDANLTI--KDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 425 --~~~~~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa~~a~ 492 (634)
...+.++|.++|+.+..+. .-.+.|+|+||+|.+|.+.++|.+.+.. .+....++..++=.||+++|.
T Consensus 267 ~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 267 LEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred CCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccC
Confidence 2367788888888765331 1136799999999999999999887721 233345667777788888775
Q ss_pred H
Q psy8852 493 F 493 (634)
Q Consensus 493 ~ 493 (634)
.
T Consensus 347 ~ 347 (373)
T smart00268 347 L 347 (373)
T ss_pred c
Confidence 3
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >KOG0713|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-17 Score=161.12 Aligned_cols=67 Identities=24% Similarity=0.401 Sum_probs=60.3
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
++|||+|||||++++ .++||+|||+||++|||||+++++. |.+.|+.||.||++||||.+|+.|+-.
T Consensus 15 ~rDfYelLgV~k~As--d~eIKkAYRKLALk~HPDkNpddp~-----A~e~F~~in~AYEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 15 GRDFYELLGVPKNAS--DQEIKKAYRKLALKYHPDKNPDDPN-----ANEKFKEINAAYEVLSDPEKRKHYDTY 81 (336)
T ss_pred CCCHHHHhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 479999999999655 6799999999999999999887654 678999999999999999999999863
|
|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-13 Score=141.65 Aligned_cols=205 Identities=17% Similarity=0.220 Sum_probs=140.6
Q ss_pred EEEEeCCCCCHHH-HHHHHHHHHHc------C------CceeeeecchhHHHHHhhhccC-------ccceEEEEEEeCC
Q psy8852 264 AVITVPAYFNDIQ-RQFTKNAAKLA------G------LNVLRLLNEPTSAAIAYKLDKN-------IFEGIFAVYDLGG 323 (634)
Q Consensus 264 ~viTVPa~~~~~q-r~~l~~aa~~a------G------l~~~~li~Ep~AAa~~y~~~~~-------~~~~~vlV~D~Gg 323 (634)
++...|..+-..+ ++.+++..... | +..+.+++||.+|.+.+..+.. .....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 4458998885444 36677665331 1 2357889999999987766432 1445789999999
Q ss_pred CeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec
Q psy8852 324 GTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLS 403 (634)
Q Consensus 324 gT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~ 403 (634)
||||+++++ ++.+ +...++....|..++.+.+.+.+..+......+.... +++ |... .+.+ .
T Consensus 195 ~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~~~~~~~~~~i-------e~~---l~~g---~i~~--~ 256 (344)
T PRK13917 195 GTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKEEGASITPYML-------EKG---LEYG---ACKL--N 256 (344)
T ss_pred CcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhCCCCCCCHHHH-------HHH---HHcC---cEEe--C
Confidence 999999885 3333 2334455788999999999998865543222232221 111 2111 1111 1
Q ss_pred CCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHH
Q psy8852 404 DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 483 (634)
Q Consensus 404 ~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~av 483 (634)
.+..+ .+ ++++.++++++++++...+...+.. ..+++.|+|+||++++ +++.|++.|+.- ....||..|.
T Consensus 257 ~~~~i--d~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~-~~~~~p~~AN 326 (344)
T PRK13917 257 QKTVI--DF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV-EKADESQFAN 326 (344)
T ss_pred CCceE--eh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe-EEcCChHHHH
Confidence 11122 22 4667789999999999888888864 2478999999999986 899999999864 4568999999
Q ss_pred HHHHHHHHhHhcC
Q psy8852 484 VFGAAIQANFLSG 496 (634)
Q Consensus 484 a~GAa~~a~~~~~ 496 (634)
|+|...+|..+.+
T Consensus 327 a~G~~~~g~~~~~ 339 (344)
T PRK13917 327 VRGYYKYGELLKN 339 (344)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999986654
|
|
| >PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-16 Score=118.92 Aligned_cols=64 Identities=28% Similarity=0.422 Sum_probs=57.7
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYL 72 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~ 72 (634)
|||++|||+++ .+.++|+++|+++++++|||++++.+ ..+.+.+..|++||++|+||.+|+.|+
T Consensus 1 ~~y~iLgl~~~--~~~~eik~~y~~l~~~~HPD~~~~~~----~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPD--ASDEEIKKAYRRLSKQYHPDKNSGDE----AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTT--SSHHHHHHHHHHHHHHTSTTTGTSTH----HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCC--CCHHHHHHHHHhhhhccccccchhhh----hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999995 55789999999999999999987655 457789999999999999999999996
|
Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A .... |
| >KOG0718|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-15 Score=151.92 Aligned_cols=67 Identities=27% Similarity=0.462 Sum_probs=61.4
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
|||.+||||++++ .+||++|||++++.|||||+. +++.++.|+++|++|.+||++|+||.+|+.|++
T Consensus 10 e~Ya~LNlpkdAt--~eeI~~AYrr~~~lfHPDkh~--dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~ 76 (546)
T KOG0718|consen 10 ELYALLNLPKDAT--DEEIKKAYRRLSRLFHPDKHT--DPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN 76 (546)
T ss_pred hHHHHhCCCcccC--HHHHHHHHHHHHHhcCCcccC--ChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 8999999999766 559999999999999999975 456788899999999999999999999999986
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-13 Score=146.10 Aligned_cols=287 Identities=16% Similarity=0.167 Sum_probs=179.5
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC------------cEEecHhHHhhhccCCCchhhhhhh
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG------------KIYVGKKAKITQNIDPKNTISSIKR 202 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~------------~~~~G~~A~~~~~~~~~~~i~~~k~ 202 (634)
.|.||+||.++++++..+..|.++ +||+|+..+++ ++.+|.+|..... . ..
T Consensus 6 ~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~--~----~~--- 68 (414)
T PTZ00280 6 VVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASK--S----YT--- 68 (414)
T ss_pred eEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhCcC--C----cE---
Confidence 589999999999999876666654 68888764331 2455655532100 0 00
Q ss_pred hcCCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q psy8852 203 FIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN 282 (634)
Q Consensus 203 ~lg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 282 (634)
+ ..| ..++.+.-.+.+..++.++...... ....-..+++|.|..++..+|+.+.+
T Consensus 69 -l----------~~P-------------i~~G~I~dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~~Re~l~e 123 (414)
T PTZ00280 69 -L----------TYP-------------MKHGIVEDWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPENREYTAE 123 (414)
T ss_pred -E----------ecC-------------ccCCEeCCHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHHHHHHHHH
Confidence 0 112 1234556677888888876543211 12223468999999999999999877
Q ss_pred HH-HHcCCceeeeecchhHHHHHhhhccCc----cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHH
Q psy8852 283 AA-KLAGLNVLRLLNEPTSAAIAYKLDKNI----FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 357 (634)
Q Consensus 283 aa-~~aGl~~~~li~Ep~AAa~~y~~~~~~----~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~ 357 (634)
.+ +..+++.+.+..+|.+|++++...... ...+-+|+|+|.++|+++-+.- |.. +.......++||.++++.
T Consensus 124 ~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~--G~~-l~~~~~~~~~GG~~lt~~ 200 (414)
T PTZ00280 124 IMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD--GYV-IGSSIKHIPLAGRDITNF 200 (414)
T ss_pred HHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEEC--CEE-cccceEEecCcHHHHHHH
Confidence 65 555999999999999999986332111 1234599999999999986542 322 111122368999999999
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcc---------------eEEEEEec---CCceeEEEEeHHHHH-
Q psy8852 358 LFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSS---------------VKLNVKLS---DKKIVNITIDMKQFF- 418 (634)
Q Consensus 358 l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------------~~i~i~~~---~g~~~~~~itr~~~e- 418 (634)
|.+++.++... . ... .....++.+|+.++.... ....+.+. +|....+.|..+.|.
T Consensus 201 L~~lL~~~~~~-~-~~~---~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~ 275 (414)
T PTZ00280 201 IQQMLRERGEP-I-PAE---DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLG 275 (414)
T ss_pred HHHHHHHcCCC-C-CcH---HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcC
Confidence 99988664221 1 111 112346667776543210 01112222 244456777776664
Q ss_pred --HHHHHHH------HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhccC
Q psy8852 419 --TITQHLV------NRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT 471 (634)
Q Consensus 419 --~~~~~~~------~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~ 471 (634)
-++.|-+ ..+.++|.++|.++..+ ..-.+.|+|+||+|.+|.+.++|.+.+..
T Consensus 276 ~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 276 PEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred cccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 2344422 14667788888877543 22247899999999999999999888743
|
|
| >PRK14288 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-15 Score=154.30 Aligned_cols=65 Identities=25% Similarity=0.417 Sum_probs=57.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+||++||||+++.++ .++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~dyY~vLgv~~~As--~~eIkkayrkla~k~HPD~~~~~~-----~a~~~f~~i~~AYevLsd~~kR~~YD~ 67 (369)
T PRK14288 3 LSYYEILEVEKHSN--QETIKKSYRKLALKYHPDRNAGDK-----EAEEKFKLINEAYGVLSDEKKRALYDR 67 (369)
T ss_pred CChHHHcCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCcc-----HHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 69999999999655 779999999999999999975422 267899999999999999999999986
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=147.42 Aligned_cols=306 Identities=19% Similarity=0.248 Sum_probs=188.1
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC----cEEecHhHHhhhccCCCchhhhhhhhcCCCCC
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG----KIYVGKKAKITQNIDPKNTISSIKRFIARDLK 209 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~----~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~ 209 (634)
-.|-||+|+.++++++..+..|..+ +||+++...+. ...+|..+.... .. ..+ .
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~~--~~-~~~---~-------- 62 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSPR--SN-LEL---R-------- 62 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHTG--TG-EEE---E--------
T ss_pred CEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccch--hh-eee---e--------
Confidence 4689999999999999766666544 78888775543 367888753310 00 000 0
Q ss_pred CcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH-HHHcC
Q psy8852 210 NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA-AKLAG 288 (634)
Q Consensus 210 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a-a~~aG 288 (634)
.| ..++.+.-.+.+..+++++...... ....-..++++.|..++...|+.+.+. .+..|
T Consensus 63 ------~p-------------~~~g~i~~~~~~e~i~~~~~~~~l~-~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~ 122 (393)
T PF00022_consen 63 ------SP-------------IENGVIVDWDALEEIWDYIFSNLLK-VDPSDHPVLLTEPPFNPRSQREKLAEILFEKFG 122 (393)
T ss_dssp ------ES-------------EETTEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS-
T ss_pred ------ee-------------ccccccccccccccccccccccccc-cccccceeeeeccccCCchhhhhhhhhhhcccc
Confidence 11 1234455566777777777664311 123445799999999999999887765 55779
Q ss_pred CceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH-Hh
Q psy8852 289 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN-AF 367 (634)
Q Consensus 289 l~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~-~~ 367 (634)
++.+.++++|.+|+++++.... +|+|+|.+.|.++-+ -+|.. +.......++||.++++.|.+.+.++ +.
T Consensus 123 ~~~v~~~~~~~~a~~~~g~~tg------lVVD~G~~~t~v~pV--~dG~~-~~~~~~~~~~GG~~lt~~l~~lL~~~~~~ 193 (393)
T PF00022_consen 123 VPSVYFIPSPLLALYASGRTTG------LVVDIGYSSTSVVPV--VDGYV-LPHSIKRSPIGGDDLTEYLKELLKERNIQ 193 (393)
T ss_dssp -SEEEEEEHHHHHHHHTTBSSE------EEEEESSS-EEEEEE--ETTEE--GGGBEEES-SHHHHHHHHHHHHHHT-SS
T ss_pred cceeeeeecccccccccccccc------cccccceeeeeeeee--eeccc-cccccccccccHHHHHHHHHHHHHhhccc
Confidence 9999999999999999876644 999999999988765 33322 11112236899999999999988884 11
Q ss_pred hcc--------C---CHHHHHHHHHHHHHHHHHhc---CC----------cceEEEEEecCCceeEEEEeHHHHHHHHHH
Q psy8852 368 LKK--------L---SYKDVNILMIKSREIKELLS---YQ----------SSVKLNVKLSDKKIVNITIDMKQFFTITQH 423 (634)
Q Consensus 368 ~~~--------~---~~~~~~~L~~~~e~~K~~Ls---~~----------~~~~i~i~~~~g~~~~~~itr~~~e~~~~~ 423 (634)
... . .......-...++.+|+.+. .. ........+.+|. .+.+..+.| .+.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lPdg~--~i~~~~er~-~~~E~ 270 (393)
T PF00022_consen 194 INPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELPDGQ--TIILGKERF-RIPEI 270 (393)
T ss_dssp --GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-TTSS--EEEESTHHH-HHHHT
T ss_pred cccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccccccc--ccccccccc-ccccc
Confidence 100 0 01111112233344444431 11 1122334455666 444554444 33343
Q ss_pred HHH----------------HHHHHHHHHHHHcCCCcCC--CCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCC
Q psy8852 424 LVN----------------RTILLSSKALMDANLTIKD--INNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSI 477 (634)
Q Consensus 424 ~~~----------------~~~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~ 477 (634)
+++ .+.++|.+++..+..+... .+.|+|+||+|.+|.+.++|.+.+.. ++..+.
T Consensus 271 LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~ 350 (393)
T PF00022_consen 271 LFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPP 350 (393)
T ss_dssp TTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T
T ss_pred ccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCc
Confidence 332 5778888888887644221 37899999999999999999877632 233445
Q ss_pred -ChhhHHHHHHHHHHhH
Q psy8852 478 -DPDKAVVFGAAIQANF 493 (634)
Q Consensus 478 -~p~~ava~GAa~~a~~ 493 (634)
+|..++=.||+++|..
T Consensus 351 ~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 351 SDRQFAAWIGGSILASL 367 (393)
T ss_dssp -TTTSHHHHHHHHHHTS
T ss_pred hhhhhcccccceeeecc
Confidence 8999999999999864
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >PRK14296 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-14 Score=152.11 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=56.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~dyY~~Lgv~~~a--~~~eik~ayrkla~~~HPD~n~~------~~a~~~F~~i~~AyevLsD~~KR~~YD~ 67 (372)
T PRK14296 4 KDYYEVLGVSKTA--SEQEIRQAYRKLAKQYHPDLNKS------PDAHDKMVEINEAADVLLDKDKRKQYDQ 67 (372)
T ss_pred CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC------chHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 5999999999965 47799999999999999999642 1267899999999999999999999986
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.8e-13 Score=136.08 Aligned_cols=204 Identities=18% Similarity=0.150 Sum_probs=135.4
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeeeecchhHHHHHhhhccC---ccceEEEEEEeCCCeEE
Q psy8852 260 RIFGAVITVPAYFNDIQRQFTKNAAKLA---------GLNVLRLLNEPTSAAIAYKLDKN---IFEGIFAVYDLGGGTFD 327 (634)
Q Consensus 260 ~~~~~viTVPa~~~~~qr~~l~~aa~~a---------Gl~~~~li~Ep~AAa~~y~~~~~---~~~~~vlV~D~GggT~d 327 (634)
.+..+|+..|..+...+++.+++..... -++.+.+++||.+|.+.+..+.. .....++|+|+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4567999999999888999999886532 33568899999999988765432 15567899999999999
Q ss_pred EEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCc
Q psy8852 328 ISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK-KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKK 406 (634)
Q Consensus 328 vsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~-~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~ 406 (634)
+.+++ +..+ +...++....|..++-+.+.+.+.++++.. ..+...+ ++ .|..... +.+ .|.
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~~~~~~~~i-------~~---~l~~g~~--~~~---~gk 242 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGTPAYRDIDRI-------DL---ALRTGKQ--PRI---YQK 242 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcCCCCccCHHHH-------HH---HHHhCCc--eee---cce
Confidence 98763 4443 444555678899999999999998888755 2121111 11 1111110 000 122
Q ss_pred eeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCC-cCCCCChhhHHHH
Q psy8852 407 IVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTSIDPDKAVVF 485 (634)
Q Consensus 407 ~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~~~~~~p~~ava~ 485 (634)
.+ .|+ +..+..+..++++...+.+.+.. ..+++.|+|+||++. .+++.|++.|+.. +....||..|.|+
T Consensus 243 ~~--di~--~~~~~~~~~~~~~v~~i~~~~~~----~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANar 312 (320)
T TIGR03739 243 PV--DIK--RCLELAETVAQQAVSTMMTWIGA----PESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVR 312 (320)
T ss_pred ec--Cch--HHHHHHHHHHHHHHHHHHHhccc----CCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHH
Confidence 22 222 22223344444444444443321 245889999999998 7789999999874 3456899999999
Q ss_pred HHHHHH
Q psy8852 486 GAAIQA 491 (634)
Q Consensus 486 GAa~~a 491 (634)
|-..++
T Consensus 313 G~~~~g 318 (320)
T TIGR03739 313 GFQIAG 318 (320)
T ss_pred HHHHhh
Confidence 988775
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-13 Score=143.35 Aligned_cols=300 Identities=17% Similarity=0.201 Sum_probs=187.5
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC---------cEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG---------KIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
.|-||+|+.++++++..+..|..+ +||+|+..+++ ..++|.++.... . ... +
T Consensus 8 ~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~---~---~~~----l- 68 (376)
T PTZ00281 8 ALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR---G---ILT----L- 68 (376)
T ss_pred eEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhccc---c---CcE----E-
Confidence 588999999999999877776544 67777664322 234455442210 0 000 0
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH-HH
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN-AA 284 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~-aa 284 (634)
..| ..++.+.-.+.+..++.++..... .....-..+++|-|..+...+|+.|.+ ..
T Consensus 69 ---------~~P-------------i~~G~i~dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~l~e~lF 125 (376)
T PTZ00281 69 ---------KYP-------------IEHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMF 125 (376)
T ss_pred ---------ecc-------------CcCCEEcCHHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHHHHHHHh
Confidence 011 123455666777778877764211 112233578999999999999999877 56
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
+..+++.+.+...|.+++++++.. +-+|+|+|.+.|.++-+.-+. . +.......++||.++++.|.+.+..
T Consensus 126 E~~~vp~~~~~~~~~ls~ya~g~~------tglVVDiG~~~t~v~PV~dG~--~-~~~~~~~~~~GG~~lt~~L~~lL~~ 196 (376)
T PTZ00281 126 ETFNTPAMYVAIQAVLSLYASGRT------TGIVMDSGDGVSHTVPIYEGY--A-LPHAILRLDLAGRDLTDYMMKILTE 196 (376)
T ss_pred cccCCceeEeeccHHHHHHhcCCc------eEEEEECCCceEEEEEEEecc--c-chhheeeccCcHHHHHHHHHHHHHh
Confidence 677999999999999999887543 459999999999987443221 1 1222223689999999999987765
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHhcCCc--------------ceEEEEEecCCceeEEEEeHHHH---HHHHHHHH--
Q psy8852 365 NAFLKKLSYKDVNILMIKSREIKELLSYQS--------------SVKLNVKLSDKKIVNITIDMKQF---FTITQHLV-- 425 (634)
Q Consensus 365 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~--------------~~~i~i~~~~g~~~~~~itr~~~---e~~~~~~~-- 425 (634)
+- ........ ...++.+|+.++... .......+.+|..+. +..+.| |-++.|.+
T Consensus 197 ~~-~~~~~~~~----~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~~i~--i~~er~~~~E~LF~P~~~~ 269 (376)
T PTZ00281 197 RG-YSFTTTAE----REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVIT--IGNERFRCPEALFQPSFLG 269 (376)
T ss_pred cC-CCCCcHHH----HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCCEEE--eeHHHeeCcccccChhhcC
Confidence 32 11111111 234566677654221 112234456665544 444433 23344422
Q ss_pred ---HHHHHHHHHHHHHcCCCc--CCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHHHHHh
Q psy8852 426 ---NRTILLSSKALMDANLTI--KDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 426 ---~~~~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa~~a~ 492 (634)
..+.++|.+++..+..+. .-.+.|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||+++|.
T Consensus 270 ~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 270 MESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred CCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 146677777777765431 1237899999999999999999877631 233445667788888888875
|
|
| >PRK14282 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-14 Score=150.07 Aligned_cols=66 Identities=21% Similarity=0.467 Sum_probs=58.0
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||+++.. +..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~~lgv~~~a~--~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 69 (369)
T PRK14282 4 KDYYEILGVSRNAT--QEEIKRAYKRLVKEWHPDRHPEN----RKEAEQKFKEIQEAYEVLSDPQKRAMYDR 69 (369)
T ss_pred CChHHhcCCCCCCC--HHHHHHHHHHHHHHHCCCCCccc----hhHHHHHHHHHHHHHHHhcChhhHHHHhh
Confidence 59999999999654 77999999999999999997532 23377899999999999999999999986
|
|
| >PRK14286 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-14 Score=149.61 Aligned_cols=65 Identities=28% Similarity=0.423 Sum_probs=57.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||++... ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~~Lgv~~~a~--~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (372)
T PRK14286 4 RSYYDILGVSKSAN--DEEIKSAYRKLAIKYHPDKNKGN-----KESEEKFKEATEAYEILRDPKKRQAYDQ 68 (372)
T ss_pred CCHHHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCc-----hHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 59999999999765 66999999999999999997532 2367899999999999999999999986
|
|
| >smart00271 DnaJ DnaJ molecular chaperone homology domain | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-14 Score=107.38 Aligned_cols=60 Identities=25% Similarity=0.506 Sum_probs=52.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFL 67 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~ 67 (634)
+|||++|||+++ ++.++|+++|+++++++|||++.+. ...+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~--~~~~~ik~ay~~l~~~~HPD~~~~~----~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRD--ASLDEIKKAYRKLALKYHPDKNPGD----KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc----hHHHHHHHHHHHHHHHHHcCCCC
Confidence 589999999996 6678999999999999999998754 45577899999999999999853
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-13 Score=141.35 Aligned_cols=298 Identities=16% Similarity=0.200 Sum_probs=186.7
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC---------cEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG---------KIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
.|.||+|+.++++++..+..|.++ +||+++..++. ..++|.++.... . . ..+
T Consensus 8 ~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~---~--~-~~l----- 68 (378)
T PTZ00004 8 AAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR---G--I-LTL----- 68 (378)
T ss_pred eEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhccc---c--c-ceE-----
Confidence 589999999999999877666544 68887764331 244555542210 0 0 000
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhC--CCcCcEEEEeCCCCCHHHHHHHHHH
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVN--NRIFGAVITVPAYFNDIQRQFTKNA 283 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~--~~~~~~viTVPa~~~~~qr~~l~~a 283 (634)
..| ..++.+.-.+.+..++.++... .++ ..-..+++|-|..++..+|+.+.+.
T Consensus 69 ---------~~P-------------i~~G~i~d~d~~e~i~~~~~~~---~l~v~~~~~pvllte~~~~~~~~r~~~~e~ 123 (378)
T PTZ00004 69 ---------KYP-------------IEHGIVTNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQI 123 (378)
T ss_pred ---------ccc-------------CcCCEEcCHHHHHHHHHHHHHh---hcccCCccCcceeecCCCCcHHHHHHHHHH
Confidence 112 1234555567777788875432 222 2345688999999999999877664
Q ss_pred -HHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 284 -AKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 284 -a~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
.+..|++.+.+..+|.+|+++++. .+-+|+|+|.+.|+++-+. +|.. +.......++||.++++.|.+.+
T Consensus 124 lFE~~~~~~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~pV~--dG~~-l~~~~~~~~~GG~~lt~~L~~lL 194 (378)
T PTZ00004 124 MFETHNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYS-LPHAIHRLDVAGRDLTEYMMKIL 194 (378)
T ss_pred HHhhcCCceEEeeccHHHHHHhcCC------ceEEEEECCCCcEEEEEEE--CCEE-eecceeeecccHHHHHHHHHHHH
Confidence 566799999999999999998754 3459999999999988553 2322 22222336899999999999987
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHhcCCc---------------ceEEEEEecCCceeEEEEeHHHHH---HHHHHH
Q psy8852 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQS---------------SVKLNVKLSDKKIVNITIDMKQFF---TITQHL 424 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~---------------~~~i~i~~~~g~~~~~~itr~~~e---~~~~~~ 424 (634)
..+... .++... ...++..|+.++... .......+.+|..+.+ ..+.|. -++.|-
T Consensus 195 ~~~~~~--~~~~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~~i~l--~~er~~~~E~LF~P~ 267 (378)
T PTZ00004 195 HERGTT--FTTTAE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGTIITV--GSERFRCPEALFQPS 267 (378)
T ss_pred HhcCCC--CCcHHH---HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCCEEEE--cHHHeeCcccccChh
Confidence 553210 111111 123455555542211 0123445567765544 444432 344443
Q ss_pred ------HHHHHHHHHHHHHHcCCCc--CCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHH
Q psy8852 425 ------VNRTILLSSKALMDANLTI--KDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAA 488 (634)
Q Consensus 425 ------~~~~~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa 488 (634)
...+.++|.+++.++..+. .-...|+|+||+|.+|.+.++|...+.. ++..+.++..++=.||+
T Consensus 268 ~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggs 347 (378)
T PTZ00004 268 LIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGS 347 (378)
T ss_pred hcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcc
Confidence 2346677888887765431 2237899999999999999999877631 23334566677777887
Q ss_pred HHHh
Q psy8852 489 IQAN 492 (634)
Q Consensus 489 ~~a~ 492 (634)
++|.
T Consensus 348 ilas 351 (378)
T PTZ00004 348 ILSS 351 (378)
T ss_pred cccC
Confidence 7764
|
|
| >PRK14279 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-14 Score=150.05 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=57.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||++... +.++++|++|++||++|+||.+|+.|+.
T Consensus 9 ~Dyy~~Lgv~~~a~--~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vLsD~~KR~~YD~ 73 (392)
T PRK14279 9 KDFYKELGVSSDAS--AEEIKKAYRKLARELHPDANPGD-----PAAEERFKAVSEAHDVLSDPAKRKEYDE 73 (392)
T ss_pred cCHHHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCC-----hHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence 59999999999655 67999999999999999997542 2367899999999999999999999986
|
|
| >KOG0712|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-14 Score=140.67 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=57.0
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+.||++|||+++|+ .+|||+|||+|+++|||||+++ +.++|++|++||++||||.+|+.|+.
T Consensus 4 ~~~y~il~v~~~As--~~eikkayrkla~k~HpDkn~~--------~~ekfkei~~AyevLsd~ekr~~yD~ 65 (337)
T KOG0712|consen 4 TKLYDILGVSPDAS--EEEIKKAYRKLALKYHPDKNPD--------AGEKFKEISQAYEVLSDPEKREIYDQ 65 (337)
T ss_pred cccceeeccCCCcC--HHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 68999999999655 7799999999999999999876 56899999999999999999999986
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-12 Score=135.29 Aligned_cols=300 Identities=20% Similarity=0.182 Sum_probs=187.1
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC---------cEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG---------KIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
.|-||+|+.++++++..+..|.++ +||+|+..++. +.++|.+|..... ...+
T Consensus 7 ~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~------~~~l----- 67 (375)
T PTZ00452 7 AVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRG------VLAI----- 67 (375)
T ss_pred EEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhcccc------CcEE-----
Confidence 588999999999999887777655 67877764332 2345555422100 0000
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH-H
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA-A 284 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a-a 284 (634)
..| +.++.+.-.+.+..++.|+...... ....-..+++|-|...+..+|+.|.+. .
T Consensus 68 ---------~~P-------------i~~G~I~dwd~~e~iw~~~f~~~l~-v~p~~~pvlitE~~~~~~~~Re~l~eilF 124 (375)
T PTZ00452 68 ---------KEP-------------IQNGIINSWDDIEIIWHHAFYNELC-MSPEDQPVFMTDAPMNSKFNRERMTQIMF 124 (375)
T ss_pred ---------ccc-------------CcCCEEcCHHHHHHHHHHHHHhhcC-CCcccCceeeecCCCCCHHHHHHHHHHHh
Confidence 011 2234556667777788877543211 223345799999999999999888775 5
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
+..+++.+.+.+.|.+++++++.. +-+|+|+|.+.|.++-+. +|..- ........+||.++++.|.+.+.+
T Consensus 125 E~~~vp~~~~~~~~~lslya~g~~------tglVVDiG~~~t~v~PV~--dG~~l-~~~~~r~~~gG~~lt~~L~~lL~~ 195 (375)
T PTZ00452 125 ETFNTPCLYISNEAVLSLYTSGKT------IGLVVDSGEGVTHCVPVF--EGHQI-PQAITKINLAGRLCTDYLTQILQE 195 (375)
T ss_pred hccCCceEEEechHHHHHHHCCCc------eeeeecCCCCcceEEEEE--CCEEe-ccceEEeeccchHHHHHHHHHHHh
Confidence 567889999999999999987543 449999999999987543 33221 122223679999999999887754
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHhcCCc--------------ceEEEEEecCCceeEEEEeHHHHH---HHHHHHH--
Q psy8852 365 NAFLKKLSYKDVNILMIKSREIKELLSYQS--------------SVKLNVKLSDKKIVNITIDMKQFF---TITQHLV-- 425 (634)
Q Consensus 365 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~--------------~~~i~i~~~~g~~~~~~itr~~~e---~~~~~~~-- 425 (634)
+ +........ ...++.+|+.++... ......++.+|..+. +..+.|. -+++|.+
T Consensus 196 ~-~~~~~~~~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~~i~--l~~er~~~~E~LF~P~~~g 268 (375)
T PTZ00452 196 L-GYSLTEPHQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNILT--IKSQKFRCSEILFQPKLIG 268 (375)
T ss_pred c-CCCCCCHHH----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCCEEE--eehHHhcCcccccChhhcC
Confidence 2 111111111 123455555543221 112234456666544 4555551 2333432
Q ss_pred ---HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHHHHHh
Q psy8852 426 ---NRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 426 ---~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa~~a~ 492 (634)
..+.+++.+++..+..+ ..-.+.|+|+||+|.+|.+.++|.+.+.. ++..+.++..++=.|++++|.
T Consensus 269 ~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 269 LEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred CCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 23567777777776533 22247999999999999999999877621 233345566667778888775
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=136.29 Aligned_cols=299 Identities=17% Similarity=0.179 Sum_probs=187.6
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC---------cEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG---------KIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
.|-||+|+.++++++..+..|.++ +||+|+..+.. ..++|.++..... . +.
T Consensus 14 ~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~-----~-------~~ 73 (380)
T PTZ00466 14 PIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRG-----L-------LK 73 (380)
T ss_pred eEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhCc-----C-------ce
Confidence 488999999999999877676654 67777664321 2345555422100 0 00
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH-HH
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN-AA 284 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~-aa 284 (634)
. ..| +.++.+.-.+.+..+++++.+... ....-..+++|-|..++..+|+.+.+ ..
T Consensus 74 l--------~~P-------------i~~G~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lF 130 (380)
T PTZ00466 74 V--------TYP-------------INHGIIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFF 130 (380)
T ss_pred e--------Ccc-------------ccCCeECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHh
Confidence 0 112 223466677788888888764321 12234568899999999999998766 45
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
+..+++.+.+..+|.+|+++++.. +-+|+|+|.+.|.++-+. +|.. +.......++||.++++.|.+.+.+
T Consensus 131 E~~~~p~~~~~~~~~lsl~a~g~~------tglVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~GG~~lt~~L~~lL~~ 201 (380)
T PTZ00466 131 ETFNVPALFISIQAILSLYSCGKT------NGTVLDCGDGVCHCVSIY--EGYS-ITNTITRTDVAGRDITTYLGYLLRK 201 (380)
T ss_pred ccCCCCeEEEecchHHHHHhcCCc------eEEEEeCCCCceEEEEEE--CCEE-eecceeEecCchhHHHHHHHHHHHh
Confidence 667999999999999999987543 459999999999887543 3322 2222223689999999999987754
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHhcCC-------------cceEEEEEecCCceeEEEEeHHHH---HHHHHHHH---
Q psy8852 365 NAFLKKLSYKDVNILMIKSREIKELLSYQ-------------SSVKLNVKLSDKKIVNITIDMKQF---FTITQHLV--- 425 (634)
Q Consensus 365 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-------------~~~~i~i~~~~g~~~~~~itr~~~---e~~~~~~~--- 425 (634)
+ +.. .+.. .-+..++.+|+.++.. .......++.+|..+. +..+.| |-++.|-+
T Consensus 202 ~-~~~-~~~~---~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~~i~--l~~er~~~~E~LF~P~~~g~ 274 (380)
T PTZ00466 202 N-GHL-FNTS---AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGSQIL--IGSERYRAPEVLFNPSILGL 274 (380)
T ss_pred c-CCC-CCcH---HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCcEEE--EchHHhcCcccccCccccCC
Confidence 2 111 1111 1123455566654321 1112344556666544 455444 22333321
Q ss_pred --HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHHHHHh
Q psy8852 426 --NRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 426 --~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa~~a~ 492 (634)
..+.++|.+.+.++..+ ..-...|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||+++|.
T Consensus 275 ~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 275 EYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred CCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 14567777777776543 22247899999999999999999877721 233345666667778888775
|
|
| >PRK14295 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-14 Score=147.72 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=57.3
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||++... ..++++|++||+||++|+||.+|+.|+.
T Consensus 9 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 9 KDYYKVLGVPKDA--TEAEIKKAYRKLAREYHPDANKGD-----AKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred cCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc-----hhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 4999999999965 467999999999999999997542 2367899999999999999999999996
|
|
| >PRK14285 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-14 Score=145.98 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=57.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++ ++.++||+|||+|+++||||++... ..++++|++|++||++|+||.+|+.|+.
T Consensus 3 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yd~ 67 (365)
T PRK14285 3 RDYYEILGLSKG--ASKDEIKKAYRKIAIKYHPDKNKGN-----KEAESIFKEATEAYEVLIDDNKRAQYDR 67 (365)
T ss_pred CCHHHhcCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHHHHHcCcchhHHHHh
Confidence 699999999996 4577999999999999999996542 2366799999999999999999999987
|
|
| >PRK14287 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-14 Score=146.27 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=56.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~~Lgv~~~a~--~~eik~ayr~la~~~HpD~~~~------~~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 4 RDYYEVLGVDRNAS--VDEVKKAYRKLARKYHPDVNKA------PDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred CCHHHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 59999999999665 5699999999999999999642 2366799999999999999999999986
|
|
| >PRK14301 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-14 Score=146.76 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=57.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||+++.+ ..++++|++|++||++|+||.+|+.|+.
T Consensus 4 ~~~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 68 (373)
T PRK14301 4 RDYYEVLGVSRDA--SEDEIKKAYRKLALQYHPDRNPDN-----PEAEQKFKEAAEAYEVLRDAEKRARYDR 68 (373)
T ss_pred CChHHhcCCCCCC--CHHHHHHHHHHHHHHhCCCcCCCC-----hHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 6999999999965 467999999999999999997643 2366789999999999999999999986
|
|
| >KOG0717|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-14 Score=141.36 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=59.7
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
|+.||++|||.+.++ ..+||++||+|+++|||||++.. -+.+.+.|++|+.||++||||..|+=|+-..
T Consensus 7 ~~c~YE~L~v~~~a~--d~eik~~YRklALq~HPDknpd~----ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 7 KRCYYEVLGVERDAD--DDEIKKNYRKLALQYHPDKNPDR----IEEATQQFQLIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred hhHHHHHhcccccCC--HHHHHHHHHHHHHhhCCCCCCcc----HHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence 578999999999655 55999999999999999995433 3458899999999999999999999998543
|
|
| >PRK14278 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-14 Score=145.99 Aligned_cols=64 Identities=19% Similarity=0.382 Sum_probs=57.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||+++. ..++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~iLgv~~~a--~~~eik~ayr~la~~~hpD~~~~------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~ 66 (378)
T PRK14278 3 RDYYGLLGVSRNA--SDAEIKRAYRKLARELHPDVNPD------EEAQEKFKEISVAYEVLSDPEKRRIVDL 66 (378)
T ss_pred CCcceecCCCCCC--CHHHHHHHHHHHHHHHCCCCCCc------HHHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence 6999999999965 47799999999999999999752 2367899999999999999999999986
|
|
| >cd06257 DnaJ DnaJ domain or J-domain | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-13 Score=102.31 Aligned_cols=55 Identities=25% Similarity=0.469 Sum_probs=48.8
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCC
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKD 64 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d 64 (634)
|||++|||+++ ++.++|+++|++|++++|||++.+. ..+.+.+..|++||++|+|
T Consensus 1 ~~y~vLgl~~~--~~~~~ik~~y~~l~~~~HPD~~~~~-----~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPD--ASDEEIKKAYRKLALKYHPDKNPDD-----PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHhcC
Confidence 79999999985 5678999999999999999997654 4577899999999999987
|
DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. |
| >PRK14281 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.5e-14 Score=146.27 Aligned_cols=65 Identities=23% Similarity=0.397 Sum_probs=57.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.|||++|||++++ +.++||+|||+|+++||||+++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 67 (397)
T PRK14281 3 RDYYEVLGVSRSA--DKDEIKKAYRKLALKYHPDKNPDN-----KEAEEHFKEVNEAYEVLSNDDKRRRYDQ 67 (397)
T ss_pred CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc-----hHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 6999999999964 577999999999999999997543 2366899999999999999999999996
|
|
| >PTZ00037 DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-14 Score=147.01 Aligned_cols=61 Identities=28% Similarity=0.393 Sum_probs=54.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++|||||+.. .++|++||+||++|+||.+|+.|+.
T Consensus 28 ~d~Y~vLGV~~~A--s~~eIKkAYrkla~k~HPDk~~~---------~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 28 EKLYEVLNLSKDC--TTSEIKKAYRKLAIKHHPDKGGD---------PEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred hhHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCch---------HHHHHHHHHHHHHhccHHHHHHHhh
Confidence 5999999999965 47799999999999999999531 2689999999999999999999986
|
|
| >PRK14299 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.6e-14 Score=140.31 Aligned_cols=64 Identities=30% Similarity=0.503 Sum_probs=56.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~~L~d~~kr~~yD~ 67 (291)
T PRK14299 4 KDYYAILGVPKNA--SQDEIKKAFKKLARKYHPDVNKS------PGAEEKFKEINEAYTVLSDPEKRRIYDT 67 (291)
T ss_pred CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 5999999999964 57799999999999999999752 2356789999999999999999999997
|
|
| >PRK14277 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.3e-14 Score=145.96 Aligned_cols=65 Identities=28% Similarity=0.437 Sum_probs=57.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.|||++|||+++ ++.++||+|||+|+++||||+++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 5 ~d~y~~Lgv~~~--a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 69 (386)
T PRK14277 5 KDYYEILGVDRN--ATEEEIKKAYRRLAKKYHPDLNPGD-----KEAEQKFKEINEAYEILSDPQKRAQYDQ 69 (386)
T ss_pred CCHHHhcCCCCC--CCHHHHHHHHHHHHHHHCCCcCCCc-----hHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 599999999995 5577999999999999999997543 2367899999999999999999999986
|
|
| >PRK14294 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-14 Score=144.89 Aligned_cols=65 Identities=25% Similarity=0.431 Sum_probs=57.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++ ++.++||+|||+|+++||||+++.. ..++++|++|++||++|+||.+|+.|+.
T Consensus 4 ~d~y~~lgv~~~--a~~~eik~ayr~la~~~HPD~~~~~-----~~~~~~f~~~~~Ay~vL~d~~~r~~yD~ 68 (366)
T PRK14294 4 RDYYEILGVTRD--ASEEEIKKSYRKLAMKYHPDRNPGD-----KEAEELFKEAAEAYEVLSDPKKRGIYDQ 68 (366)
T ss_pred CChHHHhCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCc-----hHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 599999999995 5577999999999999999997543 2356789999999999999999999986
|
|
| >PRK14297 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.5e-14 Score=146.52 Aligned_cols=65 Identities=26% Similarity=0.417 Sum_probs=57.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||+++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~~Lgv~~~a~--~~~ik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 68 (380)
T PRK14297 4 KDYYEVLGLEKGAS--DDEIKKAFRKLAIKYHPDKNKGN-----KEAEEKFKEINEAYQVLSDPQKKAQYDQ 68 (380)
T ss_pred CChHHhhCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHhcCHhhhCchhh
Confidence 59999999999655 66999999999999999997542 2367899999999999999999999986
|
|
| >PRK14292 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.1e-14 Score=145.71 Aligned_cols=65 Identities=23% Similarity=0.429 Sum_probs=58.2
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
|.|||++|||++++ +.++||+|||+|+++||||++.. ..++++|++||+||++|+||.+|+.|+.
T Consensus 1 ~~d~y~~Lgv~~~a--~~~~ik~ayr~l~~~~hpD~~~~------~~a~~~~~~i~~Ay~vL~d~~~r~~yd~ 65 (371)
T PRK14292 1 MMDYYELLGVSRTA--SADEIKSAYRKLALKYHPDRNKE------KGAAEKFAQINEAYAVLSDAEKRAHYDR 65 (371)
T ss_pred CCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC------hhHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence 89999999999965 47799999999999999999752 2366789999999999999999999987
|
|
| >PRK14276 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-13 Score=145.36 Aligned_cols=64 Identities=28% Similarity=0.401 Sum_probs=56.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||+++.. .++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~~------~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 67 (380)
T PRK14276 4 TEYYDRLGVSKDA--SQDEIKKAYRKLSKKYHPDINKEP------GAEEKYKEVQEAYETLSDPQKRAAYDQ 67 (380)
T ss_pred CCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc------CHHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence 5999999999965 577999999999999999997532 256789999999999999999999996
|
|
| >PRK14291 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-13 Score=145.30 Aligned_cols=64 Identities=25% Similarity=0.455 Sum_probs=57.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||+++. ..++++|++|++||++|+||.+|+.|+.
T Consensus 3 ~d~Y~~Lgv~~~a~--~~~ik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vLsd~~kR~~YD~ 66 (382)
T PRK14291 3 KDYYEILGVSRNAT--QEEIKKAYRRLARKYHPDFNKN------PEAEEKFKEINEAYQVLSDPEKRKLYDQ 66 (382)
T ss_pred CCHHHhhCCCCCCC--HHHHHHHHHHHHHHHCCCCCCC------ccHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 59999999999654 6799999999999999999754 2256789999999999999999999997
|
|
| >PRK14284 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-13 Score=145.29 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=57.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++ ++.++||+|||+|+++||||++++. ..++++|++||+||++|+||.+|+.|+.
T Consensus 1 ~d~y~iLgv~~~--a~~~eikkayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 65 (391)
T PRK14284 1 MDYYTILGVSKT--ASPEEIKKAYRKLAVKYHPDKNPGD-----AEAEKRFKEVSEAYEVLSDAQKRESYDR 65 (391)
T ss_pred CCHHHhcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc-----hHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 599999999996 5577999999999999999997643 2367789999999999999999999986
|
|
| >PRK14298 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-13 Score=144.65 Aligned_cols=64 Identities=23% Similarity=0.405 Sum_probs=56.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||+++. ..++++|++||+||++|+||.+|+.|+.
T Consensus 5 ~d~y~iLgv~~~a--~~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (377)
T PRK14298 5 RDYYEILGLSKDA--SVEDIKKAYRKLAMKYHPDKNKE------PDAEEKFKEISEAYAVLSDAEKRAQYDR 68 (377)
T ss_pred CCHHHhhCCCCCC--CHHHHHHHHHHHHHHhCccccCC------hhHHHHHHHHHHHHHHhcchHhhhhhhh
Confidence 4999999999965 57799999999999999999752 2256789999999999999999999986
|
|
| >PRK14290 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-13 Score=144.08 Aligned_cols=66 Identities=23% Similarity=0.398 Sum_probs=58.3
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++ ++.++|++|||+|+++||||+++.. +..++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~vLgv~~~--a~~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (365)
T PRK14290 3 KDYYKILGVDRN--ASQEDIKKAFRELAKKWHPDLHPGN----KAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68 (365)
T ss_pred CChhhhcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc----hhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence 699999999995 5577999999999999999996432 33477899999999999999999999986
|
|
| >KOG0716|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-13 Score=130.42 Aligned_cols=66 Identities=30% Similarity=0.463 Sum_probs=57.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
.|+|++||+|++ ++.++|||+||+|+++||||+.+..++ +..+|.+||+||++|+||.+|-.|+-.
T Consensus 31 ~~LYdVLgl~k~--at~d~IKKaYR~L~~k~HPD~~gd~P~-----~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 31 LDLYDVLGLPKT--ATKDEIKKAYRKLALKYHPDKNGDNPE-----ATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred hHHHHHhCCCcc--cchHHHHHHHHHHHHHhCCCcCCCCch-----hHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 379999999995 556789999999999999999876532 678999999999999999999999853
|
|
| >PRK14280 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-13 Score=143.89 Aligned_cols=64 Identities=25% Similarity=0.419 Sum_probs=56.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||++... .++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~~~y~iLgv~~~a--~~~eik~ayr~la~~~HpD~~~~~------~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 67 (376)
T PRK14280 4 RDYYEVLGVSKSA--SKDEIKKAYRKLSKKYHPDINKEE------GADEKFKEISEAYEVLSDDQKRAQYDQ 67 (376)
T ss_pred CChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHhccHhHHHHHHh
Confidence 5999999999965 467999999999999999997532 256789999999999999999999996
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.2e-11 Score=124.45 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhh-----hccCccce-EEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCC
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK-----LDKNIFEG-IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDS 347 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~-----~~~~~~~~-~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 347 (634)
....+.+.++++.||++...+..+|.|.+-.+. ........ .++++|+|+++|++++++-+...+ ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEEe
Confidence 567788999999999999999999999877663 12221333 499999999999999986443222 3447
Q ss_pred CccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHH
Q psy8852 348 NLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR 427 (634)
Q Consensus 348 ~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~ 427 (634)
.+||.+|++.+.+.+ +.. ...||+.|...+.... .-.+++++.+++
T Consensus 217 ~~G~~~i~~~i~~~~----~~~----------~~~Ae~~k~~~~~~~~--------------------~~~~~~~~~~~~ 262 (348)
T TIGR01175 217 PFGTRQLTSELSRAY----GLN----------PEEAGEAKQQGGLPLL--------------------YDPEVLRRFKGE 262 (348)
T ss_pred echHHHHHHHHHHHc----CCC----------HHHHHHHHhcCCCCCc--------------------hhHHHHHHHHHH
Confidence 899999999887422 222 3677888765332111 012345666666
Q ss_pred HHHHHHHHHHHc--CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCC-------------------CCChhhHHHHH
Q psy8852 428 TILLSSKALMDA--NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT-------------------SIDPDKAVVFG 486 (634)
Q Consensus 428 ~~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~-------------------~~~p~~ava~G 486 (634)
+...|.+.|+-. ......++.|+|+||+++++.+.+.+++.||.++.. ...|..++|.|
T Consensus 263 l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~a~G 342 (348)
T TIGR01175 263 LVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAPALMTALG 342 (348)
T ss_pred HHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhhhHHHHHHhh
Confidence 666677766532 122346899999999999999999999999864421 13456788888
Q ss_pred HHHHH
Q psy8852 487 AAIQA 491 (634)
Q Consensus 487 Aa~~a 491 (634)
+|+++
T Consensus 343 lalr~ 347 (348)
T TIGR01175 343 LALRG 347 (348)
T ss_pred HhhcC
Confidence 88764
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PRK14300 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-13 Score=142.14 Aligned_cols=64 Identities=30% Similarity=0.437 Sum_probs=56.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++||+|||+|+++||||++... .++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~~~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~~------~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 66 (372)
T PRK14300 3 QDYYQILGVSKTA--SQADLKKAYLKLAKQYHPDTTDAK------DAEKKFKEINAAYDVLKDEQKRAAYDR 66 (372)
T ss_pred CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc------CHHHHHHHHHHHHHHhhhHhHhhHHHh
Confidence 7999999999964 477999999999999999997521 256789999999999999999999987
|
|
| >PRK10767 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-13 Score=142.54 Aligned_cols=65 Identities=23% Similarity=0.423 Sum_probs=57.4
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||++... ..++++|++||+||++|+||.+|+.|+.
T Consensus 4 ~d~y~iLgv~~~as--~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (371)
T PRK10767 4 RDYYEVLGVSRNAS--EDEIKKAYRKLAMKYHPDRNPGD-----KEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68 (371)
T ss_pred CChHHhcCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCc-----HHHHHHHHHHHHHHHHhcchhhhhHhhh
Confidence 59999999999654 77999999999999999997542 2267899999999999999999999986
|
|
| >PRK10266 curved DNA-binding protein CbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-13 Score=137.95 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=57.6
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
++|||++|||+++++ .++||+|||+|+++||||++.. ..+.++|++||+||++|+||.+|+.|+..
T Consensus 3 ~~d~y~~Lgv~~~a~--~~eik~ayr~la~k~HPD~~~~------~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~ 68 (306)
T PRK10266 3 LKDYYAIMGVKPTDD--LKTIKTAYRRLARKYHPDVSKE------PDAEARFKEVAEAWEVLSDEQRRAEYDQL 68 (306)
T ss_pred cCChHHHcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 379999999999655 6699999999999999999542 13678999999999999999999999963
|
|
| >PRK14283 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-13 Score=142.24 Aligned_cols=64 Identities=20% Similarity=0.389 Sum_probs=57.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++++ .++||+|||+|+++||||++.. ..++++|++|++||++|+||.+|+.|+.
T Consensus 5 ~d~y~~Lgv~~~a~--~~eik~ayr~la~~~HPD~~~~------~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 5 RDYYEVLGVDRNAD--KKEIKKAYRKLARKYHPDVSEE------EGAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred CChHHhhCCCCCCC--HHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 49999999999655 7799999999999999999642 2367899999999999999999999987
|
|
| >KOG0719|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-13 Score=123.44 Aligned_cols=67 Identities=24% Similarity=0.362 Sum_probs=59.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|.|++|||.++ ++.++|++|||+||+++|||+.+ ++....+..+|++++.||++|+|..+|+.|+-
T Consensus 14 ~d~YevLGVer~--a~~~eIrkAY~klal~~HPDk~~---eed~~ea~~kFq~l~k~y~iLsDeekR~~YDe 80 (264)
T KOG0719|consen 14 KDLYEVLGVERD--ATDKEIRKAYHKLALRLHPDKNH---EEDKVEATEKFQQLQKAYQILSDEEKRAVYDE 80 (264)
T ss_pred cCHHHHhhhccc--CCHHHHHHHHHHHHHHhCCCcch---hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 489999999996 45889999999999999999965 45566788999999999999999999999975
|
|
| >PRK14293 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-13 Score=139.84 Aligned_cols=64 Identities=27% Similarity=0.470 Sum_probs=56.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.|||++|||+++ ++.++||+|||+|+++||||+++.. .++++|++||+||++|+||.+|+.|+.
T Consensus 3 ~d~y~vLgv~~~--a~~~eik~ayr~la~~~HPD~~~~~------~a~~~f~~i~~Ay~vL~~~~~R~~yd~ 66 (374)
T PRK14293 3 ADYYEILGVSRD--ADKDELKRAYRRLARKYHPDVNKEP------GAEDRFKEINRAYEVLSDPETRARYDQ 66 (374)
T ss_pred CChhhhcCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCc------CHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 699999999995 5578999999999999999997532 256789999999999999999999986
|
|
| >COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-13 Score=124.66 Aligned_cols=110 Identities=35% Similarity=0.555 Sum_probs=101.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhc-CCCC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN-GIDL 80 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~-~~~~ 80 (634)
.|||.++|+++.|.++...++..|+.+++.+|||++...+..++..+.+.+..+|.||.||+||..|+.|++.+. |...
T Consensus 1 ~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~~~ 80 (174)
T COG1076 1 SDGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLDH 80 (174)
T ss_pred CCcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccccc
Confidence 379999999999999999999999999999999999999999998899999999999999999999999999997 8777
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHhhcch
Q psy8852 81 NTKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111 (634)
Q Consensus 81 ~~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~ 111 (634)
..+..+..+..|+|++|+|++++..++....
T Consensus 81 ~~e~~~l~~~~~l~~~~~~~~e~~~~~~~~~ 111 (174)
T COG1076 81 AKERQTLRDIAFLLEQSELREELEEAREQLD 111 (174)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHccc
Confidence 7776777789999999999999999887665
|
|
| >TIGR02349 DnaJ_bact chaperone protein DnaJ | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-13 Score=139.34 Aligned_cols=63 Identities=27% Similarity=0.447 Sum_probs=55.9
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
|||++|||++++ +.++||+|||+|+++||||+++. ..++++|++||+||++|+||.+|+.|+.
T Consensus 1 d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 63 (354)
T TIGR02349 1 DYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNKD------KEAEEKFKEINEAYEVLSDPEKRAQYDQ 63 (354)
T ss_pred ChHHhCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC------ccHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence 799999999965 57799999999999999999751 2256799999999999999999999976
|
This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. |
| >KOG0691|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-13 Score=130.40 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=60.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
.|||+||||... .+.++|++|||+.+++|||||++++|. |.++|+.+.+||++|+||..|+.|+-.+
T Consensus 5 ~dyY~lLgi~~~--at~~eIkKaYr~kaL~~HPDKNp~dP~-----A~ekFq~L~eAy~VL~D~~~R~~YDk~~ 71 (296)
T KOG0691|consen 5 TDYYDLLGISED--ATDAEIKKAYRKKALQYHPDKNPGDPQ-----AAEKFQELSEAYEVLSDEESRAAYDKLR 71 (296)
T ss_pred chHHHHhCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 599999999985 557899999999999999999887664 7789999999999999999999999765
|
|
| >PTZ00341 Ring-infected erythrocyte surface antigen; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=141.80 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=71.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
++||++|||+++++ ..+||+|||+||++|||||++.. .+.++|+.|++||++||||.+|+.|+. +|...-
T Consensus 573 ~dYYdILGVs~dAS--~~EIKKAYRKLAlkyHPDKN~~~------~A~ekFq~I~EAYeVLSDp~kRk~YD~--~G~~Gl 642 (1136)
T PTZ00341 573 TLFYDILGVGVNAD--MKEISERYFKLAENYYPPKRSGN------EGFHKFKKINEAYQILGDIDKKKMYNK--FGYDGI 642 (1136)
T ss_pred CChHHHcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHhCCHHHHHHHhh--cccccc
Confidence 58999999999654 77999999999999999997542 256799999999999999999999986 444321
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcch
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~ 111 (634)
.. ....||.+.. ++.--+.+.+.-....
T Consensus 643 ~~-~~~iDP~~Ff-mlFgse~F~dYiG~l~ 670 (1136)
T PTZ00341 643 KG-VNFIHPSIFY-LLASLEKFADFTGSPQ 670 (1136)
T ss_pred CC-CCccCHHHHH-HHhhhHHHHHhcCCHH
Confidence 11 2345665443 3444455555544443
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.4e-11 Score=124.06 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhcc---C--ccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCC
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK---N--IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSN 348 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~---~--~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 348 (634)
....+...++++.||++...+=-+|.|.+-.+.... . ...+.++++|+|+.++.+++++-+...+ .....
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f-----~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF-----SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE-----EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE-----EEEEe
Confidence 566688889999999999878777777665554421 1 1346899999999999999876433222 33468
Q ss_pred ccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHH
Q psy8852 349 LGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRT 428 (634)
Q Consensus 349 lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~ 428 (634)
+||.++++.+.+.+.-. ..++|+.|..-+... +...+++.+.++++
T Consensus 210 ~G~~~l~~~i~~~~~i~--------------~~~Ae~~k~~~~l~~--------------------~~~~~~l~~~~~~l 255 (340)
T PF11104_consen 210 IGGNDLTEAIARELGID--------------FEEAEELKRSGGLPE--------------------EYDQDALRPFLEEL 255 (340)
T ss_dssp -SHHHHHHHHHHHTT----------------HHHHHHHHHHT--------------------------HHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHhcCCC--------------HHHHHHHHhcCCCCc--------------------chHHHHHHHHHHHH
Confidence 99999999998643221 256666666522111 23345667777777
Q ss_pred HHHHHHHHHH--cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcC---------CCC----------ChhhHHHHHH
Q psy8852 429 ILLSSKALMD--ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL---------TSI----------DPDKAVVFGA 487 (634)
Q Consensus 429 ~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~---------~~~----------~p~~ava~GA 487 (634)
...|++.++- .......|+.|+|+||+++++.+.+.|++.++.++. .+. .|..++|.|+
T Consensus 256 ~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GL 335 (340)
T PF11104_consen 256 AREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGL 335 (340)
T ss_dssp HHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHH
Confidence 7777777662 223345799999999999999999999999986532 111 3678999999
Q ss_pred HHHH
Q psy8852 488 AIQA 491 (634)
Q Consensus 488 a~~a 491 (634)
|++.
T Consensus 336 AlR~ 339 (340)
T PF11104_consen 336 ALRG 339 (340)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 9874
|
|
| >PRK14289 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-13 Score=139.07 Aligned_cols=65 Identities=25% Similarity=0.375 Sum_probs=57.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.|||++|||+++++ .++|++|||+|+++||||+++.. ..++++|++|++||++|+||.+|+.|+.
T Consensus 5 ~~~y~~Lgv~~~a~--~~eik~ayr~la~~~HpD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~yD~ 69 (386)
T PRK14289 5 RDYYEVLGVSKTAT--VDEIKKAYRKKAIQYHPDKNPGD-----KEAEEKFKEAAEAYDVLSDPDKRSRYDQ 69 (386)
T ss_pred CCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCC-----hHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 49999999999655 66999999999999999997643 2367889999999999999999999986
|
|
| >KOG0715|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-12 Score=130.34 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=61.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGI 78 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~ 78 (634)
+|||++|||+++++ .+|||+||++|+++||||-+... .+.++|++|.+||++|+|+.+|++|+..+.+.
T Consensus 43 ~d~Y~vLgv~~~At--~~EIK~Af~~LaKkyHPD~n~~~------~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 43 EDYYKVLGVSRNAT--LSEIKSAFRKLAKKYHPDVNKDK------EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred cchhhhhCcCCCCC--HHHHHHHHHHHHHhhCCCCCCCc------chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 48999999999655 77999999999999999986654 47789999999999999999999999877543
|
|
| >KOG0721|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-12 Score=116.76 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=57.9
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCC
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 79 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~ 79 (634)
|.|++|||++.++ .+|||+|||+|+.+|||||.+.. ...++.+..|++||+.|+|+..|.+|+. +|.+
T Consensus 100 DPyEILGl~pgas--~~eIKkaYR~LSik~HPDK~~~~-----~~~e~~~~~I~KAY~aLTD~~sreN~ek--YG~P 167 (230)
T KOG0721|consen 100 DPYEILGLDPGAS--EKEIKKAYRRLSIKYHPDKQPPE-----EGDEEFFEAIAKAYQALTDKKSRENWEK--YGNP 167 (230)
T ss_pred CcHHhhCCCCCCC--HHHHHHHHHHhhhhhCCCcCCCc-----chhHHHHHHHHHHHHHhcchhhHHHHHH--hCCC
Confidence 8999999999654 77999999999999999997653 2245677789999999999999999965 6655
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=120.15 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=100.8
Q ss_pred ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhc
Q psy8852 290 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 369 (634)
..+.+++||.||.+.+..... ....++|+|+||+|+|++++.- +.-.+-...+...+|-..+-+.+.+.+.. ....
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~-~~~~ 216 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-EDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRS-AGID 216 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS--TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT---SBH
T ss_pred eeEEEEcccHHHHHHHHHhhc-ccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHH-hcCC
Confidence 467899999999998876644 4567999999999999998852 21122333455678988888888877665 2111
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeE
Q psy8852 370 KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNV 449 (634)
Q Consensus 370 ~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V 449 (634)
. +......+..... -+..++.. + ... =..+++.++++..++++.+-+.+.+.+ ..+++.|
T Consensus 217 ~-s~~~~~~ii~~~~-~~~~~~~~------i---~~~-----~~~~~v~~~i~~~~~~l~~~i~~~~~~----~~~~~~I 276 (318)
T PF06406_consen 217 T-SELQIDDIIRNRK-DKGYLRQV------I---NDE-----DVIDDVSEVIEEAVEELINRILRELGD----FSDIDRI 276 (318)
T ss_dssp H-HHHHHHHHHHTTT--HHHHHHH------S---SSH-----HHHHHHHHHHHHHHHHHHHHHHHHHTT----S-S-SEE
T ss_pred C-cHHHHHHHHHhhh-ccceeccc------c---cch-----hhHHHHHHHHHHHHHHHHHHHHHHHhh----hccCCeE
Confidence 1 0011111111000 00000000 0 000 012444555555565655555555543 2367899
Q ss_pred EEEcCCcCcHHHHHHHHhhcc---CCcCCCCChhhHHHHHHH
Q psy8852 450 ILVGGSTRMKHIHEGVSNFFK---TTLLTSIDPDKAVVFGAA 488 (634)
Q Consensus 450 iLvGG~s~~p~v~~~l~~~f~---~~~~~~~~p~~ava~GAa 488 (634)
+|+||++. .+.+.|++.|+ .++....||..|.|+|-+
T Consensus 277 ~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 277 FFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp EEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred EEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 99999987 89999999997 356678999999999965
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-12 Score=135.68 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=57.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
+|||++|||+++ ++.++||++||+|+++||||++.. ..+.++|++||+||++|+||.+|+.|+...
T Consensus 2 ~DYYeVLGVs~d--AS~eEIKKAYRKLAKKyHPDKn~~------~eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDRD--ADEQEIKKAFRKLAKKYHPDRNKA------PDAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 699999999995 557799999999999999999764 225678999999999999999999999744
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. |
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.6e-10 Score=109.42 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=126.0
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEec--------CCcEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLP--------DGKIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~--------~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
-.|-||.|+..++++|....-|..+ +||++...- .+..+++..|..
T Consensus 12 ~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~------------------ 65 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAIH------------------ 65 (426)
T ss_pred ceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhcc------------------
Confidence 3588999999999999887766655 788887521 112355555422
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH-HH
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN-AA 284 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~-aa 284 (634)
.+-.. .++ .-.+.++.+.-.+++.+.++|..+.-.+ .+..-..++||-|++=+.+.|+.+.+ +.
T Consensus 66 ~pr~g-------mEv-------~~~i~nGlv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ElmF 130 (426)
T KOG0679|consen 66 VPRPG-------MEV-------KTPIKNGLVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLTELMF 130 (426)
T ss_pred CCCCC-------Cee-------ccchhcCCcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHHHHHH
Confidence 11110 111 0112345677788999999998864332 23334679999998778888877666 56
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
+...++...+..+|+++|++-+. .+.+|+|+|++++.++=+ .+|.+-..+... .++||+.++..+.+.+..
T Consensus 131 E~~nvPAf~L~k~~v~~AFA~Gr------stalVvDiGa~~~svsPV--~DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~ 201 (426)
T KOG0679|consen 131 EKLNVPAFYLAKTAVCTAFANGR------STALVVDIGATHTSVSPV--HDGYVLQKGVVK-SPLAGDFLNDQCRQLLEP 201 (426)
T ss_pred hhcCCceEEEechHHHHHHhcCC------CceEEEEecCCCceeeee--ecceEeeeeeEe-cccchHHHHHHHHHHHhh
Confidence 77788999999999999998753 356999999999888844 234333334444 789999999999998887
Q ss_pred H
Q psy8852 365 N 365 (634)
Q Consensus 365 ~ 365 (634)
+
T Consensus 202 ~ 202 (426)
T KOG0679|consen 202 K 202 (426)
T ss_pred c
Confidence 5
|
|
| >PHA03102 Small T antigen; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-11 Score=109.90 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=53.2
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.+|++|||++++..+.++||+|||++++++||||.+ ..+++++||+||++|+|+.+|+.|+.
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---------~~e~~k~in~Ay~~L~d~~~r~~yd~ 67 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---------DEEKMKELNTLYKKFRESVKSLRDLD 67 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---------hhHHHHHHHHHHHHHhhHHHhccccc
Confidence 468999999976336789999999999999999942 13578899999999999999999955
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-11 Score=119.56 Aligned_cols=67 Identities=22% Similarity=0.402 Sum_probs=61.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYL 72 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~ 72 (634)
+|||++|||.++++ .+||-+|||+++.+||||.|+. ++|++.++++|..|..|-++|+||.+|..++
T Consensus 394 RDYYKILGVkRnAs--KqEI~KAYRKlAqkWHPDNFqd--EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFD 460 (504)
T KOG0624|consen 394 RDYYKILGVKRNAS--KQEITKAYRKLAQKWHPDNFQD--EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFD 460 (504)
T ss_pred chHHHHhhhccccc--HHHHHHHHHHHHHhcCCccccC--HHHHHHHHHhhhhHHHHHHhhcCHHHHhhcc
Confidence 59999999999655 8899999999999999999974 5678889999999999999999999999996
|
|
| >COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-11 Score=118.02 Aligned_cols=68 Identities=26% Similarity=0.440 Sum_probs=60.2
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
+.+||++|||+++ ++..+|+++||++++++|||++..... .+.+.|+.||+||++|+||.+|+.|+..
T Consensus 5 ~~~~y~iLgv~~~--as~~eik~ayrkla~~~HPD~~~~~~~----~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPPN--ASLEEIKKAYRKLALKYHPDRNPGDPK----VAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchh----HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 4699999999975 557799999999999999999876553 5778999999999999999999999973
|
|
| >KOG0722|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-11 Score=111.30 Aligned_cols=67 Identities=27% Similarity=0.409 Sum_probs=59.0
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN 76 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~ 76 (634)
.|.|++|||.+++ +.++|.+|||+|++++|||++.+... .+.|..|.+||++|+|...|+.|+-.+.
T Consensus 33 enCYdVLgV~Rea--~KseIakAYRqLARrhHPDr~r~~e~------k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 33 ENCYDVLGVAREA--NKSEIAKAYRQLARRHHPDRNRDPES------KKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred hhHHHHhhhhhhc--cHHHHHHHHHHHHHHhCCcccCCchh------hhhhhhhhcccccccchhhHHhHHHHhc
Confidence 5899999999965 68899999999999999999875542 2788999999999999999999998764
|
|
| >KOG0720|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-10 Score=114.40 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=60.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNG 77 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~ 77 (634)
.|+|.+||||. ++|.++||+.||+++..+||||+. .+.|++.|..+.-||++|+|+.+|.+|++++.-
T Consensus 235 ~daYsvlGl~~--d~sd~~lKk~Yrk~A~LVhPDKn~------~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 235 LDAYSALGLPS--DCSDADLKKNYRKKAMLVHPDKNM------IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred CCchhhcCCCC--CCCHHHHHHHHHhhceEeCCCccC------ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 58999999997 566889999999999999999975 244788999999999999999999999998753
|
|
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-10 Score=115.24 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=66.7
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCC
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 79 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~ 79 (634)
|.||+||+..+.+ ..+||++||+|+.+|||||.+.-.+.++...++.+.+|++||..|+|...|..|++ +|.+
T Consensus 99 DPyEILGI~~~ts--~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~--yGtP 171 (610)
T COG5407 99 DPYEILGIDQDTS--ERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLN--YGTP 171 (610)
T ss_pred ChHHhhcccCCCc--HHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh--cCCC
Confidence 7899999999766 55999999999999999999988888999999999999999999999999999987 5554
|
|
| >PRK09430 djlA Dna-J like membrane chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-10 Score=111.64 Aligned_cols=62 Identities=15% Similarity=0.338 Sum_probs=53.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHcCCh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQK--SKIDQDASVKLSTYLNKAYSILKDP 65 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~--~~~~~~~~~~~~~~i~~Ay~~L~d~ 65 (634)
.++|++|||+++ ++.++||++||+|+++||||++.+. +++..+.+++++++||+||++|+..
T Consensus 200 ~~ay~vLgv~~~--as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 200 EDAYKVLGVSES--DDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HhHHHHcCCCCC--CCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999996 5578999999999999999998653 4556678899999999999999863
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-07 Score=90.76 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHHHhhhccC-----ccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCcc
Q psy8852 276 QRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN-----IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLG 350 (634)
Q Consensus 276 qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~-----~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lG 350 (634)
......+|++.|||+...+=-|.-|.--+|..-.. ..-..++|+|+|+..+.++++.-+...| ..+..+|
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g 224 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVG 224 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccCc
Confidence 34566789999999988787788887766652111 1223478999999999999887665444 4458899
Q ss_pred chhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHH
Q psy8852 351 GDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 430 (634)
Q Consensus 351 G~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~ 430 (634)
|+.+++.+.+. |. --...++.+|....... +--.+++.++++.+.+
T Consensus 225 ~~Qlt~~i~r~----~~----------L~~~~a~~~k~~~~~P~--------------------~y~~~vl~~f~~~l~~ 270 (354)
T COG4972 225 TDQLTQEIQRA----YS----------LTEEKAEEIKRGGTLPT--------------------DYGSEVLRPFLGELTQ 270 (354)
T ss_pred HHHHHHHHHHH----hC----------CChhHhHHHHhCCCCCC--------------------chhHHHHHHHHHHHHH
Confidence 99999998742 22 22255666666544333 1223556666666666
Q ss_pred HHHHHHHHc--CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCc
Q psy8852 431 LSSKALMDA--NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473 (634)
Q Consensus 431 ~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 473 (634)
.|.+.|+-. .-...+|+.|+|.||++.+-.+.+.+.+.++.++
T Consensus 271 ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t 315 (354)
T COG4972 271 EIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPT 315 (354)
T ss_pred HHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCe
Confidence 666666532 1233579999999999999999999999987644
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-09 Score=109.21 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=60.2
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||.+||+.+.++.+ +|+++||++++.+|||+++.. +..++.+|..+-+||.+|+||.+|..|+-
T Consensus 373 kd~ykilGi~~~as~~--eikkayrk~AL~~Hpd~~ags----q~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 373 KDWYKILGISRNASDD--EIKKAYRKLALVHHPDKNAGS----QKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred hhHHHHhhhhhhcccc--hhhhHHHHHHHHhCCCcCcch----hHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 5899999999988866 999999999999999998765 56688899999999999999999999964
|
|
| >PTZ00100 DnaJ chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-09 Score=89.20 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=41.8
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcC
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILK 63 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~ 63 (634)
++|++|||+++++ .++|+++||+|++++|||+. .+ ...+++||+||++|.
T Consensus 66 eAy~ILGv~~~As--~~eIkkaYRrLa~~~HPDkg--Gs-------~~~~~kIneAyevL~ 115 (116)
T PTZ00100 66 EAYKILNISPTAS--KERIREAHKQLMLRNHPDNG--GS-------TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHcCCCCCCC--HHHHHHHHHHHHHHhCCCCC--CC-------HHHHHHHHHHHHHHh
Confidence 7899999999654 77999999999999999983 11 235678999999984
|
|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-09 Score=111.92 Aligned_cols=62 Identities=24% Similarity=0.271 Sum_probs=53.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYL 72 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~ 72 (634)
+++|++|||++++--+..+||+|||++++++||||.. +.++|++||+||++|+|+.+|+.|.
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG---------deekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG---------DEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---------cHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 3789999999976225779999999999999999932 2468899999999999999999995
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-07 Score=97.27 Aligned_cols=185 Identities=18% Similarity=0.152 Sum_probs=121.7
Q ss_pred EEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEec----------CCcEEecHhHHhhhccCCCchhhhhhhhcC
Q psy8852 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLP----------DGKIYVGKKAKITQNIDPKNTISSIKRFIA 205 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~----------~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg 205 (634)
|.||.||..+++++..+..|..+ +|+++.... .+...+|.++...... +.
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V--------~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~----------- 68 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTV--------FPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SL----------- 68 (444)
T ss_pred EEEeCCCceEEeeecCCCCceee--------cccccccccccccccccccccccccCchhhhccCC-cc-----------
Confidence 89999999999999888777666 455554432 2234555555322110 00
Q ss_pred CCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHH-HHHhCCCcCcEEEEeCCCCCHHHHHHHHH-H
Q psy8852 206 RDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA-ENAVNNRIFGAVITVPAYFNDIQRQFTKN-A 283 (634)
Q Consensus 206 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a-~~~~~~~~~~~viTVPa~~~~~qr~~l~~-a 283 (634)
.. ......++.+.-.+.+..+++++...- .......-..+++|-|..+....|+.+-+ .
T Consensus 69 ------------~~-------~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~ 129 (444)
T COG5277 69 ------------LE-------LRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELL 129 (444)
T ss_pred ------------ce-------eecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHH
Confidence 00 000122345666677888888877663 11112233479999999999999877655 5
Q ss_pred HHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHH
Q psy8852 284 AKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV 363 (634)
Q Consensus 284 a~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 363 (634)
++...++.+.+..++.+++++.+... .+.+|+|+|.+.|+++=+-- |.. +.....-..+||++++..|.+.+.
T Consensus 130 fE~~~vp~~~~~~~~~l~~ya~g~~~----~~g~ViD~G~~~t~v~PV~D--G~~-l~~a~~ri~~gG~~it~~l~~lL~ 202 (444)
T COG5277 130 FETLNVPALYLAIQAVLSLYASGSSD----ETGLVIDSGDSVTHVIPVVD--GIV-LPKAVKRIDIGGRDITDYLKKLLR 202 (444)
T ss_pred HHhcCCcceEeeHHHHHHHHhcCCCC----CceEEEEcCCCceeeEeeec--ccc-ccccceeeecCcHHHHHHHHHHHh
Confidence 77778888888988888888776442 36699999999999884432 211 222233378999999999999888
Q ss_pred HHH
Q psy8852 364 KNA 366 (634)
Q Consensus 364 ~~~ 366 (634)
...
T Consensus 203 ~~~ 205 (444)
T COG5277 203 EKY 205 (444)
T ss_pred hcc
Confidence 853
|
|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=98.51 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=93.7
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHHH------------cCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEE
Q psy8852 260 RIFGAVITVPAYFNDIQRQFTKNAAKL------------AGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFD 327 (634)
Q Consensus 260 ~~~~~viTVPa~~~~~qr~~l~~aa~~------------aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~d 327 (634)
...-.+||.++. .++.++++++. ||++.-.++. |.|++.+...+ .++..++++|+|||||+
T Consensus 87 e~~ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse--Eke~gVa~IDIGgGTT~ 159 (475)
T PRK10719 87 DSGAVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE--ERNTRVLNIDIGGGTAN 159 (475)
T ss_pred cccEEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh--hccCceEEEEeCCCceE
Confidence 334578887754 45555666665 5666555555 99998877643 37788999999999999
Q ss_pred EEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCce
Q psy8852 328 ISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKI 407 (634)
Q Consensus 328 vsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~ 407 (634)
+++++-+. +. ..+..++||++++.. -+ -.....++.. +++.+.+ . ++ ..
T Consensus 160 iaVf~~G~----l~-~T~~l~vGG~~IT~D-~~-----~~i~yis~~~-~~l~~~~-------~--------~~----~~ 208 (475)
T PRK10719 160 YALFDAGK----VI-DTACLNVGGRLIETD-SQ-----GRVTYISPPG-QMILDEL-------G--------LA----IT 208 (475)
T ss_pred EEEEECCE----EE-EEEEEecccceEEEC-CC-----CCEEEEChHH-HHHHHHc-------C--------CC----cc
Confidence 99987554 22 244478999888544 10 0000011111 1111110 0 00 01
Q ss_pred eEEEEeHHHHHHHHHHHHHHHHHHHHHH-------HHHc-CCC-cCCCCeEEEEcCCcCc
Q psy8852 408 VNITIDMKQFFTITQHLVNRTILLSSKA-------LMDA-NLT-IKDINNVILVGGSTRM 458 (634)
Q Consensus 408 ~~~~itr~~~e~~~~~~~~~~~~~i~~~-------l~~~-~~~-~~~i~~ViLvGG~s~~ 458 (634)
.--.++.+++..+|+.+.+-+.+.+... |-.. .++ ...++.|.+.||-+..
T Consensus 209 ~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 209 DGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 1124566777777777776666665411 1111 222 3568999999998763
|
|
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-06 Score=93.42 Aligned_cols=311 Identities=17% Similarity=0.206 Sum_probs=184.0
Q ss_pred EEecHhHHhhhcc----CCCchhhhhhhhcCCCCCCcc----------cCC------CCe-EEecCCCceEEEe-c--C-
Q psy8852 179 IYVGKKAKITQNI----DPKNTISSIKRFIARDLKNIN----------TNS------FPY-DFQNKFGMLHIKT-I--S- 233 (634)
Q Consensus 179 ~~~G~~A~~~~~~----~~~~~i~~~k~~lg~~~~~~~----------~~~------~~~-~i~~~~~~~~~~~-~--~- 233 (634)
.-||.+|...... .....+.+.||+|.......+ ... .|+ ...+++|.+.+.. . .
T Consensus 330 vRVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r 409 (1002)
T PF07520_consen 330 VRVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDER 409 (1002)
T ss_pred ceecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCcccc
Confidence 4578888655432 333457889999965432110 011 111 1115666665543 1 1
Q ss_pred -----cccCHHhHHHHHHHHHHHHHHHHhCC--------------CcCcEEEEeCCCCCHHHHHHHHHHHHHc-------
Q psy8852 234 -----GIKSPIEISAQIFITLKKIAENAVNN--------------RIFGAVITVPAYFNDIQRQFTKNAAKLA------- 287 (634)
Q Consensus 234 -----~~~~~~~v~~~~L~~l~~~a~~~~~~--------------~~~~~viTVPa~~~~~qr~~l~~aa~~a------- 287 (634)
-.+|-.-+++.+|..+..+|..+.+. ...++++|||+.....+|+.+++.++.|
T Consensus 410 ~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~ 489 (1002)
T PF07520_consen 410 LPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKA 489 (1002)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 25677789999999998888776643 3557999999999999999998888766
Q ss_pred -CCc---------------------eeeeecchhHHHHHhhhcc------------------Cc----------cceEEE
Q psy8852 288 -GLN---------------------VLRLLNEPTSAAIAYKLDK------------------NI----------FEGIFA 317 (634)
Q Consensus 288 -Gl~---------------------~~~li~Ep~AAa~~y~~~~------------------~~----------~~~~vl 317 (634)
|.. +..=-+|.+|.=+-|.++. .. +.-+|.
T Consensus 490 lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriA 569 (1002)
T PF07520_consen 490 LGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIA 569 (1002)
T ss_pred cCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEE
Confidence 431 1111245555444443211 00 234789
Q ss_pred EEEeCCCeEEEEEEEEe----CC-eEEE----EEEcCCCCccchhHHHHHHH-HHHHHHhhc----c-CCHHH-------
Q psy8852 318 VYDLGGGTFDISILKFK----NG-VFKV----LSVGGDSNLGGDDFDYCLFS-WIVKNAFLK----K-LSYKD------- 375 (634)
Q Consensus 318 V~D~GggT~dvsv~~~~----~~-~~~v----~~~~~~~~lGG~~id~~l~~-~l~~~~~~~----~-~~~~~------- 375 (634)
-+|+||||||+.|-++. .+ ...+ +-..| -.+.|++|=..+++ ++...+... . .++..
T Consensus 570 SIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG 648 (1002)
T PF07520_consen 570 SIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFG 648 (1002)
T ss_pred EEecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhC
Confidence 99999999999997765 22 2221 12233 56788888665544 333333211 1 11110
Q ss_pred -----------------------HHHHHHHHHHHHH-------------Hhc-CCcceE--------EE-EEe----cCC
Q psy8852 376 -----------------------VNILMIKSREIKE-------------LLS-YQSSVK--------LN-VKL----SDK 405 (634)
Q Consensus 376 -----------------------~~~L~~~~e~~K~-------------~Ls-~~~~~~--------i~-i~~----~~g 405 (634)
..+++.++|+.-. .|. ..++.. +. +.. ++=
T Consensus 649 ~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 649 GDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcce
Confidence 0234444544221 111 000000 00 000 011
Q ss_pred ceeEEEEeHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcC--------
Q psy8852 406 KIVNITIDMKQFFTITQ---HLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL-------- 474 (634)
Q Consensus 406 ~~~~~~itr~~~e~~~~---~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~-------- 474 (634)
.++.+.|+..++...+. -.+...+..+-+++...+ -|-++|+|--|++|.|+..++...+.++.
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 34567899999988775 555666666666666654 46899999999999999999999865321
Q ss_pred ------------CCCChhhHHHHHHHHHHhHhc
Q psy8852 475 ------------TSIDPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 475 ------------~~~~p~~ava~GAa~~a~~~~ 495 (634)
.-.||...||.||.+++....
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 235899999999998875443
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >KOG0714|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-08 Score=103.76 Aligned_cols=68 Identities=25% Similarity=0.397 Sum_probs=56.9
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
++|||++||++++++.+ +|++||+.+++++|||++. +. +..++.++.++++||++|+||.+|..|+..
T Consensus 2 ~~d~~~~l~i~~~as~~--~i~ka~~~~a~~~hpdk~~--~~--~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~ 69 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEE--DIKKAYRKLALKYHPDKNP--SP--KEVAEAKFKEIAEAYEVLSDPKKRKIYDQY 69 (306)
T ss_pred cccHHHHhCccccccHH--HHHHHHHHHHHhhCCCCCC--Cc--hhhHHHHHhhhhccccccCCHHHhhhcccc
Confidence 47999999999876643 9999999999999999933 22 334445899999999999999999999764
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.9e-05 Score=76.65 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 418 FTITQHLVNRTILLSSK-ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 418 e~~~~~~~~~~~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
|+++..+...+..-+.. +++...+. + -|+|+||.+....+.+.+++.+|.+++++.+|...-|.|||+++..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--C--CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 45555555555444443 55554433 1 2999999999999999999999999999999999999999999864
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-05 Score=77.23 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=42.7
Q ss_pred CeEEEEcCCcCcHHHHHHHHhhccCCcC-CCCChhhHHHHHHHHHHhH
Q psy8852 447 NNVILVGGSTRMKHIHEGVSNFFKTTLL-TSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 447 ~~ViLvGG~s~~p~v~~~l~~~f~~~~~-~~~~p~~ava~GAa~~a~~ 493 (634)
..|+|+||.++.|.+++.+++.++.++. .+.+|..+.|.|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 4699999999999999999999998887 5778999999999999864
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-05 Score=81.51 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=43.5
Q ss_pred CeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHh
Q psy8852 447 NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 447 ~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 492 (634)
+.|+++||.++.+.+.+.+++.+|.+++.+.+|..+.|.|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 3599999999999999999999999999999999999999999984
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-06 Score=84.57 Aligned_cols=170 Identities=13% Similarity=0.157 Sum_probs=103.0
Q ss_pred eeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCC
Q psy8852 293 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372 (634)
Q Consensus 293 ~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~ 372 (634)
..++|-+|-+.....-.+.. + .|+|+||..+-+..++ ++.+.-.........|+-.|.+.+++.+ +.+.
T Consensus 73 ~~~~ei~~~~~g~~~~~~~~-~--~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l----~~~~-- 141 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPEA-R--GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL----GVSV-- 141 (248)
T ss_pred CceEEhhHHHHHHHHHCCCC-C--EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc----CCCH--
Confidence 36778888766544433312 2 4999999988888776 5544333344445667777777776533 2221
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc--ceEEEEEecCCc--eeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC-
Q psy8852 373 YKDVNILMIKSREIKELLSYQS--SVKLNVKLSDKK--IVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDIN- 447 (634)
Q Consensus 373 ~~~~~~L~~~~e~~K~~Ls~~~--~~~i~i~~~~g~--~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~- 447 (634)
++++..+..-.... +....+-...+. .+.-..++ ++++..+++.+...+.+.+...+ ++
T Consensus 142 --------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~g~~~---~di~~~~~~~va~~i~~~~~~~~-----~~~ 205 (248)
T TIGR00241 142 --------EELGSLAEKADRKAKISSMCTVFAESELISLLAAGVKK---EDILAGVYESIAERVAEMLQRLK-----IEA 205 (248)
T ss_pred --------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHhhcC-----CCC
Confidence 33333333311111 111222110000 00001122 45566666666666666555433 44
Q ss_pred eEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 448 NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 448 ~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.|+|+||.+++|++.+.+++.++.++..+.+|..+.|+|||+
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 799999999999999999999999999999999999999997
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >KOG1150|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.4e-07 Score=81.83 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=52.1
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSI 70 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~ 70 (634)
|.|++|.+.|. .+.++|++.||+|+...||||++.. ++-|...|--|.+||+.|-|+..|..
T Consensus 54 NpfeVLqIdpe--v~~edikkryRklSilVHPDKN~Dd----~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 54 NPFEVLQIDPE--VTDEDIKKRYRKLSILVHPDKNPDD----AERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ChHHHHhcCCC--CCHHHHHHHHHhhheeecCCCCccc----HHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 78999999995 5567999999999999999997643 23366788899999999999996653
|
|
| >COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.7e-07 Score=85.43 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=67.4
Q ss_pred CCCccccCCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCC
Q psy8852 2 KNYFDFFNLPK-CFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDL 80 (634)
Q Consensus 2 ~~~~~~l~~~~-~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~ 80 (634)
.|+|.+|||+. .+..++.+|.++.++...+||||+.+...... ....|..|..||++|+|+.+|.+|+.--...++
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~---~d~fFk~iqkA~evL~D~~~R~qyDS~df~adv 119 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKG---CDEFFKLIQKAREVLGDRKLRLQYDSNDFDADV 119 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCC---cHHHHHHHHHHHHHhccHHHHhhccccccccCC
Confidence 47899999996 56677889999999999999999975443332 346789999999999999999999876665555
Q ss_pred ccccccCCCHHHH
Q psy8852 81 NTKLNLNFSHDFL 93 (634)
Q Consensus 81 ~~~~~~~~~~~~l 93 (634)
.... ...+.+|.
T Consensus 120 ppp~-~~t~~~Ff 131 (379)
T COG5269 120 PPPR-IYTPDEFF 131 (379)
T ss_pred CCcc-CCCchhHH
Confidence 5442 23344554
|
|
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=88.07 Aligned_cols=272 Identities=20% Similarity=0.235 Sum_probs=148.2
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEec---------CCcEEecHhHHhhhccCCCchhhhhhhhc
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLP---------DGKIYVGKKAKITQNIDPKNTISSIKRFI 204 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~---------~~~~~~G~~A~~~~~~~~~~~i~~~k~~l 204 (634)
..|-||-|+.++++++..+..|.. .+||+|...+ .+...+|.+|.... -|
T Consensus 8 ~~vViDnGsg~~KaGfag~~~P~~--------v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~-------------~l 66 (372)
T KOG0676|consen 8 QAVVIDNGSGFVKAGFAGDDAPRA--------VFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR-------------TL 66 (372)
T ss_pred ceEEEECCCceeecccCCCCCCce--------ecceeccccccccccccccccccccchhhhccc-------------cc
Confidence 468999999999999875444432 3677774311 12345566664322 01
Q ss_pred CCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q psy8852 205 ARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAA 284 (634)
Q Consensus 205 g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa 284 (634)
- .| +..+.++-.+-+..++.|+...-..... ....+++|-|..+...-|+.|.+..
T Consensus 67 ~----------~P-------------ie~Giv~~wd~me~iw~~if~~~L~~~P-ee~pvllte~pl~p~~nREk~tqi~ 122 (372)
T KOG0676|consen 67 K----------YP-------------IERGIVTDWDDMEKIWHHLFYSELLVAP-EEHPVLLTEPPLNPKANREKLTQIM 122 (372)
T ss_pred c----------Cc-------------cccccccchHHHHHHHHHHHHHhhccCc-ccCceEeecCCCCchHhHHHHHHHh
Confidence 0 11 1224455556668888888733222222 2367999999999999998887754
Q ss_pred -HHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEE-EEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 285 -KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDIS-ILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 285 -~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvs-v~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
+..+.+.+.+ .-.|..++++... =+|+|+|.|-+++. +++ | +.+.+.-....+||.++++-+...|
T Consensus 123 FE~fnvpa~yv--a~qavlya~g~tt------G~VvD~G~gvt~~vPI~e---G-~~lp~ai~~ldl~G~dlt~~l~~~L 190 (372)
T KOG0676|consen 123 FETFNVPALYV--AIQAVLYASGRTT------GLVVDSGDGVTHVVPIYE---G-YALPHAILRLDLAGRDLTDYLLKQL 190 (372)
T ss_pred hhhcCccHhHH--HHHHHHHHcCCee------EEEEEcCCCceeeeeccc---c-cccchhhheecccchhhHHHHHHHH
Confidence 4445555444 2233333343333 38999999976544 332 2 1222333457899999999777777
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHhcCCc------------ceEEE--EEecCCceeEEEEeHHHHH---HHHHHHH
Q psy8852 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQS------------SVKLN--VKLSDKKIVNITIDMKQFF---TITQHLV 425 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------------~~~i~--i~~~~g~~~~~~itr~~~e---~~~~~~~ 425 (634)
.+ -+...... . -+.-++.+|+.++... ...+. ..+.||.. +.+.-+.|. -+++|-+
T Consensus 191 ~~-~g~s~~~~-~---~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~ 263 (372)
T KOG0676|consen 191 RK-RGYSFTTS-A---EFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSL 263 (372)
T ss_pred Hh-cccccccc-c---HHHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhh
Confidence 66 11111100 0 0112344444443221 11111 12445544 333332221 2222211
Q ss_pred -----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhc
Q psy8852 426 -----NRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFF 469 (634)
Q Consensus 426 -----~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f 469 (634)
..+-+.+-..+.++.++ +.-...|+|+||++-.|++.+++.+..
T Consensus 264 ~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 264 LGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred cCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHH
Confidence 22334444444444332 223478999999999999999888766
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00057 Score=67.20 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=37.7
Q ss_pred eEEEEcCCcCcHHHHHHHHhhccC-C----cCCCCChhhHHHHHHHHHH
Q psy8852 448 NVILVGGSTRMKHIHEGVSNFFKT-T----LLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 448 ~ViLvGG~s~~p~v~~~l~~~f~~-~----~~~~~~p~~ava~GAa~~a 491 (634)
.|+|+||.++.+.+.+.|++.++. . +..+.+|..+.|.|||+++
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 599999999999999999998843 2 4456789999999999874
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-05 Score=75.18 Aligned_cols=190 Identities=19% Similarity=0.227 Sum_probs=103.5
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHH
Q psy8852 283 AAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 362 (634)
Q Consensus 283 aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l 362 (634)
.-+..|.++..-=.|+.+|.+....+.. .+..+.++|+|||+||.+++.-.+. +.-++-.| .|+.++..|.
T Consensus 104 l~~~lgv~V~igGvEAemAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~g~-v~~iHlAG----AG~mVTmlI~--- 174 (332)
T PF08841_consen 104 LEEELGVPVEIGGVEAEMAILGALTTPG-TDKPLAILDMGGGSTDASIINRDGE-VTAIHLAG----AGNMVTMLIN--- 174 (332)
T ss_dssp HHHHHTSEEEEECEHHHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHH---
T ss_pred HHHHHCCceEEccccHHHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCCCc-EEEEEecC----CchhhHHHHH---
Confidence 3445688877777899999998877776 7777899999999999999876543 33333332 3555555543
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcc---------eEEEE---Ee-----------cCCceeE--EEEeHHHH
Q psy8852 363 VKNAFLKKLSYKDVNILMIKSREIKELLSYQSS---------VKLNV---KL-----------SDKKIVN--ITIDMKQF 417 (634)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------~~i~i---~~-----------~~g~~~~--~~itr~~~ 417 (634)
..++... +.-+|.+|+---..-+ .++.+ ++ .++.-.. ..++-+++
T Consensus 175 -sELGl~d---------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lEki 244 (332)
T PF08841_consen 175 -SELGLED---------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLEKI 244 (332)
T ss_dssp -HHCT-S----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HHHH
T ss_pred -HhhCCCC---------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHHHH
Confidence 3343322 2456777764211111 11111 00 0111111 12333333
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHcCC--CcCCCCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHH
Q psy8852 418 FTITQHLVNR-TILLSSKALMDANL--TIKDINNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFG 486 (634)
Q Consensus 418 e~~~~~~~~~-~~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~G 486 (634)
..+=...-++ +..-+.++|++... +..+|+.|+||||++.-.-|-+++.+.+.. ++.-..-|..|||.|
T Consensus 245 r~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATG 324 (332)
T PF08841_consen 245 RSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATG 324 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHH
Confidence 3332222222 12233344554332 245789999999999888888888877621 344456799999999
Q ss_pred HHHHH
Q psy8852 487 AAIQA 491 (634)
Q Consensus 487 Aa~~a 491 (634)
.++..
T Consensus 325 Lvlsy 329 (332)
T PF08841_consen 325 LVLSY 329 (332)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99754
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00062 Score=68.28 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=42.8
Q ss_pred CCCeEEEEc-CCcCcHHHHHHHHhhc---cCCcCCCCChhhHHHHHHHHHHh
Q psy8852 445 DINNVILVG-GSTRMKHIHEGVSNFF---KTTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 445 ~i~~ViLvG-G~s~~p~v~~~l~~~f---~~~~~~~~~p~~ava~GAa~~a~ 492 (634)
.++.|+++| |.++.|.+++.+.+.+ +.+++.+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 357899999 7999999999999988 57788899999999999999875
|
|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0004 Score=76.01 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=57.9
Q ss_pred EEeHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 411 TIDMKQFFTIT-QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 411 ~itr~~~e~~~-~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.-+|.++...+ +.+.-.+...++ .+++.+ ...++.|.++||+++++.+.+.+.+.+|.++..... .++.++|||+
T Consensus 357 ~~~~~~l~rAvlEgia~~~~~~~~-~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~a~GaA~ 432 (470)
T PRK10331 357 NTTRGHFYRAALEGLTAQLKRNLQ-VLEKIG--HFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAM 432 (470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHH-HHHHhc--CCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCc-ccchHHHHHH
Confidence 34666665433 333333333333 344332 124789999999999999999999999999976554 4688999999
Q ss_pred HHhHhcCCCC
Q psy8852 490 QANFLSGNRG 499 (634)
Q Consensus 490 ~a~~~~~~~~ 499 (634)
.|+.-.+.++
T Consensus 433 la~~~~G~~~ 442 (470)
T PRK10331 433 FGWYGVGEFS 442 (470)
T ss_pred HHHHhcCCCC
Confidence 9987665443
|
|
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0048 Score=66.25 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=56.2
Q ss_pred eEEEEeHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcC----------
Q psy8852 408 VNITIDMKQFFTITQHL---VNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL---------- 474 (634)
Q Consensus 408 ~~~~itr~~~e~~~~~~---~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~---------- 474 (634)
..+.|.-.++.+.+-.- +......+-+++... +-|-++|+|--+|+|.++..++...+.++.
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~y-----~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINHY-----DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhhh-----cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 34566666666655433 223333333333332 456899999999999999999988754321
Q ss_pred ----------CCCChhhHHHHHHHHHHhHhcCC
Q psy8852 475 ----------TSIDPDKAVVFGAAIQANFLSGN 497 (634)
Q Consensus 475 ----------~~~~p~~ava~GAa~~a~~~~~~ 497 (634)
+-.||...+|.||.+++..+.-.
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~r 850 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALSLELR 850 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHHhhcc
Confidence 23589999999999988765543
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0003 Score=77.44 Aligned_cols=81 Identities=15% Similarity=0.047 Sum_probs=54.3
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDA-NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.-++.+|.+.+-+-+--.....-+.|.+. +. .++.|.++||+++++.+.+++.+.+|.++..+... |+.+.|+|.
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~-e~~a~g~A~ 444 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGLPVVVPEVE-EAGALGGAA 444 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCCeeEecCcc-cchHHHHHH
Confidence 34777776555544444444444555554 43 46799999999999999999999999999765444 444555555
Q ss_pred HHhHhc
Q psy8852 490 QANFLS 495 (634)
Q Consensus 490 ~a~~~~ 495 (634)
.++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 544433
|
|
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00031 Score=72.99 Aligned_cols=122 Identities=18% Similarity=0.182 Sum_probs=85.8
Q ss_pred cccCHHhHHHHHHHHHHHHHHHHhCCCc-----CcEEEEeCCCCCHHHHHH-HHHHHHHcCCceeeeecchhHHHHHhhh
Q psy8852 234 GIKSPIEISAQIFITLKKIAENAVNNRI-----FGAVITVPAYFNDIQRQF-TKNAAKLAGLNVLRLLNEPTSAAIAYKL 307 (634)
Q Consensus 234 ~~~~~~~v~~~~L~~l~~~a~~~~~~~~-----~~~viTVPa~~~~~qr~~-l~~aa~~aGl~~~~li~Ep~AAa~~y~~ 307 (634)
...+..++++++-+-+.-.....+..+. ..+|+-||..|.....+. +.-.....||....++.|+.||.+..++
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 3556666666654444333444454433 369999999999876655 4556778899999999999999998876
Q ss_pred ccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 308 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 308 ~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
.. ..|||+|+-+|.++.++-+ . ....+.--...||.||++.|+-++++
T Consensus 275 ss------~CVVdiGAQkTsIaCVEdG--v-s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 SS------ACVVDIGAQKTSIACVEDG--V-SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred cc------eeEEEccCcceeEEEeecC--c-cccCceEEeccCCchHHHHHHHHHHh
Confidence 64 3899999999999877633 1 11222223567999999999865554
|
|
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0019 Score=61.57 Aligned_cols=193 Identities=19% Similarity=0.221 Sum_probs=119.7
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeE
Q psy8852 260 RIFGAVITVPAYFNDIQRQFTKNA-AKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVF 338 (634)
Q Consensus 260 ~~~~~viTVPa~~~~~qr~~l~~a-a~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 338 (634)
.-.++.+|-|.--....|+.|-+. .+..||..+.+.-..+-+.++-++..+ +|+|-|.|-|.++=+--+ +
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG------vVvDSGDGVTHi~PVye~---~ 170 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG------VVVDSGDGVTHIVPVYEG---F 170 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce------EEEecCCCeeEEeeeecc---e
Confidence 345789999988888888887664 677899888776666655555554444 799999998887733211 1
Q ss_pred EEEEEcCCCCccchhHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHhcCCc-----------ceEEEEE---ec
Q psy8852 339 KVLSVGGDSNLGGDDFDYCLFSWIVKNA-FLKKLSYKDVNILMIKSREIKELLSYQS-----------SVKLNVK---LS 403 (634)
Q Consensus 339 ~v~~~~~~~~lGG~~id~~l~~~l~~~~-~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~i~i~---~~ 403 (634)
..-+-.+-..+.|+++++-+.+.+..+= .-.. ..=.+..+..|+.|+... ++++-++ +.
T Consensus 171 ~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~------tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLP 244 (389)
T KOG0677|consen 171 VLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNH------TADFETVREIKEKLCYISYDLELEQKLALETTVLVESYTLP 244 (389)
T ss_pred ehhhhhhhccccchhHHHHHHHHHHhhcccccc------ccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecC
Confidence 1111233467889999999998877641 1110 011244556666664421 1233333 35
Q ss_pred CCceeEEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCcC--CCCeEEEEcCCcCcHHHHHHHHhhc
Q psy8852 404 DKKIVNITIDMKQFF---TITQHLV-----NRTILLSSKALMDANLTIK--DINNVILVGGSTRMKHIHEGVSNFF 469 (634)
Q Consensus 404 ~g~~~~~~itr~~~e---~~~~~~~-----~~~~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~f 469 (634)
+|..+.+ --+.|+ .+++|.+ ..+.+++-.+++.+.++.. --++|+|.||++--|.+-+.|++.+
T Consensus 245 DGRvIkv--G~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkEl 318 (389)
T KOG0677|consen 245 DGRVIKV--GGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKEL 318 (389)
T ss_pred CCcEEEe--cceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHH
Confidence 5654443 333343 4555533 2356667777777665422 1279999999999999988887664
|
|
| >KOG0568|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.4e-05 Score=70.00 Aligned_cols=54 Identities=17% Similarity=0.404 Sum_probs=43.9
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHH-HcCC
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYS-ILKD 64 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~-~L~d 64 (634)
.||.+|||..+++.| +++.+|+.|++++|||.-.. ......|.+|.+||. +|+.
T Consensus 48 e~fril~v~e~~~ad--evr~af~~lakq~hpdsgs~------~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 48 ECFRILGVEEGADAD--EVREAFHDLAKQVHPDSGSE------EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHhcccccCchh--HHHHHHHHHHHHcCCCCCCc------cccHHHHHHHHHHHHHHHHH
Confidence 589999999976655 99999999999999997332 224578999999997 7753
|
|
| >KOG1789|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.6e-05 Score=82.50 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=43.2
Q ss_pred CCccccCCCCC--CCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcC
Q psy8852 3 NYFDFFNLPKC--FNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILK 63 (634)
Q Consensus 3 ~~~~~l~~~~~--~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~ 63 (634)
+-|++|.++.+ ...+.+.||++|++|+.+|||||++. -.++|-.+|+||+.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE--------GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE--------GREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch--------HHHHHHHHHHHHHHHH
Confidence 45789988862 23456899999999999999999642 3468889999999998
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00086 Score=70.52 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=56.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeee---ecchhHHHHHhhhcc--CccceEEEEEEeCCCeEEEEEEEEeCCe
Q psy8852 263 GAVITVPAYFNDIQRQFTKNAAKLAGLNVLRL---LNEPTSAAIAYKLDK--NIFEGIFAVYDLGGGTFDISILKFKNGV 337 (634)
Q Consensus 263 ~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~l---i~Ep~AAa~~y~~~~--~~~~~~vlV~D~GggT~dvsv~~~~~~~ 337 (634)
-++||==+--.+++++.+...+..||==++.- =.|+.=|+-..+... ......++=+|+||||+.+++++-++
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~-- 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE-- 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE--
Confidence 47788777777888888888888887311111 134444433222111 12567899999999999999987653
Q ss_pred EEEEEEcCCCCccchhH
Q psy8852 338 FKVLSVGGDSNLGGDDF 354 (634)
Q Consensus 338 ~~v~~~~~~~~lGG~~i 354 (634)
++++.. .++||+-|
T Consensus 165 --v~~T~c-l~IGGRLi 178 (473)
T PF06277_consen 165 --VIDTAC-LDIGGRLI 178 (473)
T ss_pred --EEEEEE-EeeccEEE
Confidence 445444 77888765
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.012 Score=64.60 Aligned_cols=86 Identities=14% Similarity=0.117 Sum_probs=61.5
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 490 (634)
.-++.+|-..+-+-+--....+-+.+++.+. .++.|+++||+++++.+.+.+.+.+|.++....+..++.++|||+.
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 3467776654433333333333344555443 4789999999999999999999999999966666677889999999
Q ss_pred HhHhcCCCC
Q psy8852 491 ANFLSGNRG 499 (634)
Q Consensus 491 a~~~~~~~~ 499 (634)
|+.-.+..+
T Consensus 432 A~~~~G~~~ 440 (484)
T PRK15027 432 AQIAANPEK 440 (484)
T ss_pred HHHhcCCcC
Confidence 987665443
|
|
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.02 Score=56.64 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=58.1
Q ss_pred CcCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeeecchhHHHHHhh---hccCc----cceEEEEEEeCCCeEEEEEE
Q psy8852 260 RIFGAVITVPAYFNDI-QRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK---LDKNI----FEGIFAVYDLGGGTFDISIL 331 (634)
Q Consensus 260 ~~~~~viTVPa~~~~~-qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~---~~~~~----~~~~vlV~D~GggT~dvsv~ 331 (634)
.-.++++|=|..--+. |.....-..+.-+++.+ ..-+.|+..++- .++.+ .....+|+|.|-+-|.+.=+
T Consensus 92 ~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~ 169 (400)
T KOG0680|consen 92 KDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPV 169 (400)
T ss_pred CcceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehh
Confidence 3457999999654444 44444555666777653 333444433333 22221 35589999999997776533
Q ss_pred EEeCCeEEEEEEcCCCCccchhHHHHHHHHHH
Q psy8852 332 KFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV 363 (634)
Q Consensus 332 ~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 363 (634)
-.+. ....+... ..+||..+++.|.+++.
T Consensus 170 v~g~--~~~qaV~R-iDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 VKGI--PYYQAVKR-IDVGGKALTNLLKETIS 198 (400)
T ss_pred hcCc--chhhceEE-eecchHHHHHHHHHHhh
Confidence 2221 11112222 67899999999988764
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.19 Score=50.57 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc-----CCcCCCCChhhHHHHHHHHHH
Q psy8852 418 FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-----TTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 418 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~-----~~~~~~~~p~~ava~GAa~~a 491 (634)
.+++....+.+...+...+++...... .|+|+||....+.+++.+.+.+. .++..+..|....|.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 345566666677777777776654322 29999999999888777755552 234567788899999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0097 Score=61.29 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=40.6
Q ss_pred CeEEEEcCCcCcHHHHHHHHhhcc-----CCcCCCCChhhHHHHHHHHHH
Q psy8852 447 NNVILVGGSTRMKHIHEGVSNFFK-----TTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 447 ~~ViLvGG~s~~p~v~~~l~~~f~-----~~~~~~~~p~~ava~GAa~~a 491 (634)
..|+|+||.++.+.+.+.|++.++ .+++.+.+|..+.|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 479999999999999999999994 567789999999999999975
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0092 Score=62.86 Aligned_cols=192 Identities=12% Similarity=0.064 Sum_probs=110.7
Q ss_pred CCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC
Q psy8852 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 210 (634)
Q Consensus 131 ~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~ 210 (634)
.+.+.|.||.|+..+.++|.....|.++ ++.+++--++ +..|..+. +.|.....
T Consensus 21 ~n~~piVIDNGS~~~RaGw~ge~eP~lv--------FrNvl~r~Rd--rk~~~s~t----------------~vgnd~~~ 74 (645)
T KOG0681|consen 21 SNTIPIVIDNGSYECRAGWAGEKEPRLV--------FRNVLTRPRD--RKLGASVT----------------LVGNDILN 74 (645)
T ss_pred cCCCcEEEeCCceeEeecccCCCCccch--------hhhhhccccc--cccccccc----------------cccchhhh
Confidence 4577899999999999999866555544 4555544332 22222211 11111111
Q ss_pred ccc---C-CCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH-HH
Q psy8852 211 INT---N-SFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA-AK 285 (634)
Q Consensus 211 ~~~---~-~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~a-a~ 285 (634)
.+. . +.||. +..++-.+++..+|.|+.....-.-..-...+++|=+..-....|+.|.+. .+
T Consensus 75 ~~~~Rs~~rSPFd-------------~nVvtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE 141 (645)
T KOG0681|consen 75 FQGVRSSPRSPFD-------------RNVVTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFE 141 (645)
T ss_pred hhhhhccCCCCCc-------------CCccccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHH
Confidence 000 0 12332 235666778888888877654221111234588888866666788887775 55
Q ss_pred HcCCceeeeecchhHHHHHhhhccC-ccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKN-IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~-~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
.-|++.+.+=-... +++.++.. ..+...+|+++|..+|.|-.+--+... +....-.++||.....-|.+.+.-
T Consensus 142 ~YgvP~V~yGIDsl---fS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~i---l~~~kRiN~GG~qa~dYL~~Lmq~ 215 (645)
T KOG0681|consen 142 TYGVPKVAYGIDSL---FSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLI---LKDVKRINWGGYQAGDYLSRLMQL 215 (645)
T ss_pred HcCCcceeechhhH---HHHhhccCcccCcceEEEecCCCcceeEEEecCchh---hhcceeeccCcchHHHHHHHHHhc
Confidence 66988665433332 22222222 133467999999999887755433322 223334789999988877777777
Q ss_pred HHh
Q psy8852 365 NAF 367 (634)
Q Consensus 365 ~~~ 367 (634)
++.
T Consensus 216 Kyp 218 (645)
T KOG0681|consen 216 KYP 218 (645)
T ss_pred cCc
Confidence 654
|
|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.2 Score=50.19 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=39.1
Q ss_pred CCCCeEEEEcC-CcCcHHHHHHHHhhc---cCCcCCCCChhhHHHHHHHH
Q psy8852 444 KDINNVILVGG-STRMKHIHEGVSNFF---KTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 444 ~~i~~ViLvGG-~s~~p~v~~~l~~~f---~~~~~~~~~p~~ava~GAa~ 489 (634)
..++.|+++|| .+..|.+++.+...+ +.+.+.+.|....+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 35789999999 778999999998776 45677788999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0027 Score=60.73 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=42.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
.++.|+++||.++++.+.+.+.+.||.++....+ .++.|.|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4889999999999999999999999998876555 78999999999863
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >KOG0723|consensus | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0021 Score=52.45 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=39.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCCh
Q psy8852 6 DFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDP 65 (634)
Q Consensus 6 ~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~ 65 (634)
.+|||.+ +++.+.||.++|+.....|||+-. ++ =..+.||||+..|...
T Consensus 60 lIL~v~~--s~~k~KikeaHrriM~~NHPD~GG--SP-------YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTP--SLDKDKIKEAHRRIMLANHPDRGG--SP-------YLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCc--cccHHHHHHHHHHHHHcCCCcCCC--CH-------HHHHHHHHHHHHHhcc
Confidence 4799997 577889999999999999999943 22 2345799999998653
|
|
| >PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0019 Score=51.51 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhhc
Q psy8852 88 FSHDFLEQQMKWRETLSIIKNK 109 (634)
Q Consensus 88 ~~~~~l~~~~e~~e~~~~~~~~ 109 (634)
.||+|||++|||||+|+++.+.
T Consensus 2 ~d~eFLme~mE~rE~le~~~~~ 23 (78)
T PF07743_consen 2 MDPEFLMEQMELREELEEAQNS 23 (78)
T ss_dssp S-HHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHHhhcC
Confidence 5899999999999999999654
|
HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B. |
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.1 Score=57.30 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHHHh-hhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchh
Q psy8852 276 QRQFTKNAAKLAGLNVLRLLNEPTSAAIAY-KLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353 (634)
Q Consensus 276 qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y-~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 353 (634)
....+..+-+..|+++ .+|+-.+-|.+.| +..... ..+..+|+|+|||+|.+++++-. .+ . ...+.++|.-.
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~--~~--~-~~~Sl~lG~vr 166 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGA--QA--T-SLFSLSMGCVT 166 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCC--ce--e-eeeEEeccchH
Confidence 4455666777789987 5666555555544 333321 23458999999999999987532 22 1 12347888888
Q ss_pred HHHHHH
Q psy8852 354 FDYCLF 359 (634)
Q Consensus 354 id~~l~ 359 (634)
+.+.+.
T Consensus 167 l~e~f~ 172 (496)
T PRK11031 167 WLERYF 172 (496)
T ss_pred HHHHhc
Confidence 777664
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.13 Score=56.77 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHHHh-hhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchh
Q psy8852 276 QRQFTKNAAKLAGLNVLRLLNEPTSAAIAY-KLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353 (634)
Q Consensus 276 qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y-~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 353 (634)
....+..+-+..|++. .+++..+-|.+.| +..... ..+..+|+|+|||+|.+++++-.. ..... ..++|.-.
T Consensus 98 ~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~--~~~~~---S~~lG~vr 171 (513)
T PRK10854 98 ATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFE--PILVE---SRRMGCVS 171 (513)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCC--eeEeE---EEecceee
Confidence 3345566666779887 5666665555554 433321 235689999999999999876432 21111 24788888
Q ss_pred HHHHHH
Q psy8852 354 FDYCLF 359 (634)
Q Consensus 354 id~~l~ 359 (634)
+.+.+.
T Consensus 172 l~e~f~ 177 (513)
T PRK10854 172 FAQLYF 177 (513)
T ss_pred HHhhhC
Confidence 777654
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.054 Score=57.86 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=118.7
Q ss_pred HHHHHHHHHcCCce----eeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeC---C----eEEEEEEcCC
Q psy8852 278 QFTKNAAKLAGLNV----LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKN---G----VFKVLSVGGD 346 (634)
Q Consensus 278 ~~l~~aa~~aGl~~----~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~---~----~~~v~~~~~~ 346 (634)
..+.++|+..||.. ..-+-+.-|.++..+... ..-|++=+|-+|+++.+-+-.. | ....+--..-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~----~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~ 307 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ----PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLW 307 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccCC----CCeEEEEeccceEEEEecCCceecCccccccccccCcchh
Confidence 34566777777752 112222333333222111 2335555788888887654321 1 1111111112
Q ss_pred CCccchhHHHHHHHHHHHHHhhcc------------CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCC---------
Q psy8852 347 SNLGGDDFDYCLFSWIVKNAFLKK------------LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDK--------- 405 (634)
Q Consensus 347 ~~lGG~~id~~l~~~l~~~~~~~~------------~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g--------- 405 (634)
..=||..-.-.+++|+.+...... ........+..-+++.+...+....- +-++-+.|
T Consensus 308 ~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l-~~l~~f~GNRsP~aDp~ 386 (544)
T COG1069 308 LYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGL-HVLDWFNGNRSPLADPR 386 (544)
T ss_pred hhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCc-EecccccCCcCCCCCcc
Confidence 334788888888999888752111 11122334444445555444332221 11221111
Q ss_pred -----ceeEEEEeHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCC
Q psy8852 406 -----KIVNITIDMKQFFTITQHLVNRT---ILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI 477 (634)
Q Consensus 406 -----~~~~~~itr~~~e~~~~~~~~~~---~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~ 477 (634)
..+++.-+.+.+-.+....+..+ ...|-+++++.|+. |+.|+..||..+.|.+.+.+.+..|.++..+
T Consensus 387 l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvtg~~v~i~- 462 (544)
T COG1069 387 LKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGRPVVIP- 462 (544)
T ss_pred ceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhcCCeEEee-
Confidence 12233334444445544444444 34445556666654 8999999999999999999999999988765
Q ss_pred ChhhHHHHHHHHHHhHhcCCCC
Q psy8852 478 DPDKAVVFGAAIQANFLSGNRG 499 (634)
Q Consensus 478 ~p~~ava~GAa~~a~~~~~~~~ 499 (634)
..+++++.|+|+.++.-.+.++
T Consensus 463 ~s~~a~llGsAm~~avAag~~~ 484 (544)
T COG1069 463 ASDQAVLLGAAMFAAVAAGVHP 484 (544)
T ss_pred cccchhhhHHHHHHHHHhccCc
Confidence 5568999999999987666554
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.012 Score=65.60 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=62.9
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 490 (634)
.-+|.++..++..+++.+.-.++..++...-....++.|.++||+++++.+.+.+.+.+|.++....++ ++.++|||+.
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~l 487 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAAML 487 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHHHH
Confidence 445666666666666666555554444332111247899999999999999999999999999776555 5789999999
Q ss_pred HhHhcCCC
Q psy8852 491 ANFLSGNR 498 (634)
Q Consensus 491 a~~~~~~~ 498 (634)
|+.-.+.+
T Consensus 488 A~~~~G~~ 495 (541)
T TIGR01315 488 GAKAAGTT 495 (541)
T ss_pred HHHhcCcc
Confidence 98665543
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=64.80 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=53.6
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHh
Q psy8852 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 413 tr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 492 (634)
+|.++ +..+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.||.++.....+ ++.|+|||+.|+
T Consensus 417 ~~~~~---~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~ 491 (556)
T PLN02669 417 DPPSE---VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAA 491 (556)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHH
Confidence 45444 3333444333333333333322 357899999999999999999999999988766555 678999999997
Q ss_pred H
Q psy8852 493 F 493 (634)
Q Consensus 493 ~ 493 (634)
.
T Consensus 492 ~ 492 (556)
T PLN02669 492 H 492 (556)
T ss_pred H
Confidence 5
|
|
| >KOG0431|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0067 Score=64.93 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCC--hhhHHHHHHHHHHHHHHHHHcCC
Q psy8852 16 IDMDLLDKIYYNFQKKIHPDNFIQKS--KIDQDASVKLSTYLNKAYSILKD 64 (634)
Q Consensus 16 ~~~~~i~~~y~~~~~~~HPD~~~~~~--~~~~~~~~~~~~~i~~Ay~~L~d 64 (634)
++.+++|++||+..+.+||||.++.+ ...+-.+++.|..+++||+-..-
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~ 450 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQ 450 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57889999999999999999998873 34456788899999999986543
|
|
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.036 Score=55.03 Aligned_cols=87 Identities=20% Similarity=0.107 Sum_probs=48.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceee---eecchhHHHHHhhhcc--CccceEEEEEEeCCCeEEEEEEEEeCCe
Q psy8852 263 GAVITVPAYFNDIQRQFTKNAAKLAGLNVLR---LLNEPTSAAIAYKLDK--NIFEGIFAVYDLGGGTFDISILKFKNGV 337 (634)
Q Consensus 263 ~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~---li~Ep~AAa~~y~~~~--~~~~~~vlV~D~GggT~dvsv~~~~~~~ 337 (634)
.++||=-..-..++|..+......||==++. --.|+.-|.-..+... .+....++=+|+||||+..|++..++
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk-- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK-- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc--
Confidence 4666665555666666666665566521111 1123333322221111 12556788899999999999987654
Q ss_pred EEEEEEcCCCCccchhH
Q psy8852 338 FKVLSVGGDSNLGGDDF 354 (634)
Q Consensus 338 ~~v~~~~~~~~lGG~~i 354 (634)
+..+.. ..+||+-+
T Consensus 167 --v~dTaC-LdiGGRLi 180 (473)
T COG4819 167 --VSDTAC-LDIGGRLI 180 (473)
T ss_pred --ccccee-eecCcEEE
Confidence 233332 56777654
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.026 Score=62.87 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=59.3
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-cCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGS-TRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.-+|.+|-..+-+-+--....+-+.|++.+. .++.|+++||+ ++++.+.+.+.+.||.++....++ ++.|.|||+
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~ 479 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAI 479 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHH
Confidence 3456666544443333233333444454443 47899999999 999999999999999998766554 688999999
Q ss_pred HHhHhcCCC
Q psy8852 490 QANFLSGNR 498 (634)
Q Consensus 490 ~a~~~~~~~ 498 (634)
.|+.-.+..
T Consensus 480 lA~~~~G~~ 488 (536)
T TIGR01234 480 FAAVAAGVY 488 (536)
T ss_pred HHHHHcCCc
Confidence 998766543
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.027 Score=61.55 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=58.3
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 490 (634)
.-++.+|-..+-+-+.-....+.+.+++.+. ..++.|.++||+++++.+.+.+.+.||.++....++ ++.++|||+.
T Consensus 361 ~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGaA~~ 437 (465)
T TIGR02628 361 NTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGAAMF 437 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHHHHH
Confidence 3456665544333333233333344444321 247899999999999999999999999999765554 6789999999
Q ss_pred HhHhcCCC
Q psy8852 491 ANFLSGNR 498 (634)
Q Consensus 491 a~~~~~~~ 498 (634)
|+.-.+..
T Consensus 438 a~~a~G~~ 445 (465)
T TIGR02628 438 GFYGVGEY 445 (465)
T ss_pred HHHhcCcc
Confidence 98665543
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.037 Score=61.02 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=57.3
Q ss_pred EEeHHHHHHHH-HHHHHHHHHHHHHHHHHc-CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHH
Q psy8852 411 TIDMKQFFTIT-QHLVNRTILLSSKALMDA-NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAA 488 (634)
Q Consensus 411 ~itr~~~e~~~-~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa 488 (634)
.-++.++...+ +.+.-.+...+ +.|++. +. .++.|.++||+++++.+.+++.+.||.++....+ .++.|+|||
T Consensus 367 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~-~e~~alGaA 441 (493)
T TIGR01311 367 GTTKAHIARAALEAIAFQTRDVL-EAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVRPKV-TETTALGAA 441 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEecCC-CcchHHHHH
Confidence 33566555433 33333333333 333332 33 4789999999999999999999999999976444 468899999
Q ss_pred HHHhHhcCCC
Q psy8852 489 IQANFLSGNR 498 (634)
Q Consensus 489 ~~a~~~~~~~ 498 (634)
+.|+.-.+.+
T Consensus 442 ~~a~~~~G~~ 451 (493)
T TIGR01311 442 YAAGLAVGYW 451 (493)
T ss_pred HHHHhhcCcC
Confidence 9998666543
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.042 Score=59.89 Aligned_cols=84 Identities=8% Similarity=0.024 Sum_probs=58.3
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKALMDA-NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.-+|.++-+.+-+-+--....+-+.|++. +. .++.|.++||+++++.+.+.+.+.+|.++... . .++.|+|||+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~ 429 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIG 429 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHH
Confidence 33666665444333332333333444442 33 47899999999999999999999999999643 3 5788999999
Q ss_pred HHhHhcCCCC
Q psy8852 490 QANFLSGNRG 499 (634)
Q Consensus 490 ~a~~~~~~~~ 499 (634)
.|+.-.+..+
T Consensus 430 ~a~~~~G~~~ 439 (454)
T TIGR02627 430 VQLMALDEIN 439 (454)
T ss_pred HHHHhcCCcC
Confidence 9987665443
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.031 Score=61.66 Aligned_cols=82 Identities=11% Similarity=0.174 Sum_probs=56.5
Q ss_pred EeHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 412 IDMKQFFT-ITQHLVNRTILLSSKALMD-ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 412 itr~~~e~-~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
-+|.++-. +++.+.-.+...+ +.+++ .+. .++.|.++||+++++.+.+.+.+.||.++....+ .++.++|||+
T Consensus 372 ~~~~~l~rAvlEgia~~~r~~~-e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~a~GaA~ 446 (498)
T PRK00047 372 TTKEHIIRATLESIAYQTRDVL-DAMQADSGI---RLKELRVDGGAVANNFLMQFQADILGVPVERPVV-AETTALGAAY 446 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhhCCeeEecCc-ccchHHHHHH
Confidence 34555543 3333333334443 33332 343 4789999999999999999999999999976554 4688999999
Q ss_pred HHhHhcCCC
Q psy8852 490 QANFLSGNR 498 (634)
Q Consensus 490 ~a~~~~~~~ 498 (634)
.|+.-.|..
T Consensus 447 ~A~~~~G~~ 455 (498)
T PRK00047 447 LAGLAVGFW 455 (498)
T ss_pred HHhhhcCcC
Confidence 998766543
|
|
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.049 Score=59.88 Aligned_cols=53 Identities=23% Similarity=0.400 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCC
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNR 498 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~ 498 (634)
.++.|+++||+++++.+.+.+.+.||.++.... ..++.++|||+.|+.-.+.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g~~ 442 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALGEK 442 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcCCC
Confidence 478999999999999999999999999887654 55688999999998766543
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.048 Score=60.43 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCC
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNR 498 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~ 498 (634)
.++.|.++||+++++.+.+.+.+.||.++..... .++.|+|||+.|+.-.+.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~-~e~~alGaA~~A~~~~G~~ 464 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRPAD-IETTALGAAYAAGLAVGLW 464 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEecCc-cccHHHHHHHHHHhhcCcC
Confidence 4788999999999999999999999999976444 4788999999997665543
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.054 Score=59.27 Aligned_cols=82 Identities=7% Similarity=-0.006 Sum_probs=56.4
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFTITQHLVNRTILLSSKALMDA-NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
+|.+|-..+-+-+--....+.+.|++. +. .++.|.++||+++++.+.+.+.+.+|.++.... .++.+.|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 555555444333332233333344432 32 478999999999999999999999999996543 378899999999
Q ss_pred hHhcCCCC
Q psy8852 492 NFLSGNRG 499 (634)
Q Consensus 492 ~~~~~~~~ 499 (634)
..-.+..+
T Consensus 420 ~~a~G~~~ 427 (471)
T PRK10640 420 LMTLDELN 427 (471)
T ss_pred HHHcCCcC
Confidence 87666443
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.036 Score=61.23 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=56.0
Q ss_pred eHHHHHHH-HHHHHHHHHHHHHHHHHH-cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHH
Q psy8852 413 DMKQFFTI-TQHLVNRTILLSSKALMD-ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 413 tr~~~e~~-~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 490 (634)
++.++-.. ++.+.-.+...+ +.+++ .+. .++.|.++||+++++.+.+.+.+.||.++....+ .++.++|||+.
T Consensus 376 ~~~~i~rAvlEgia~~~r~~~-~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~-~e~~alGaAl~ 450 (504)
T PTZ00294 376 TRAHIVRAALEAIALQTNDVI-ESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEM-AETTALGAALL 450 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecCc-ccchHHHHHHH
Confidence 55555432 233333333333 33333 243 3789999999999999999999999999976554 45789999999
Q ss_pred HhHhcCCC
Q psy8852 491 ANFLSGNR 498 (634)
Q Consensus 491 a~~~~~~~ 498 (634)
|+.-.+.+
T Consensus 451 aa~a~G~~ 458 (504)
T PTZ00294 451 AGLAVGVW 458 (504)
T ss_pred HHhhcCcc
Confidence 98766543
|
|
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.05 Score=60.20 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=58.2
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFT-ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~-~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
++.+|-. +++.+.-.+...+....+..+. .++.|.++||+++++.+.+.+.+.||.++....++ ++.+.|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHH
Confidence 4555543 3334444444444444343343 47899999999999999999999999999765555 68899999999
Q ss_pred hHhcCCC
Q psy8852 492 NFLSGNR 498 (634)
Q Consensus 492 ~~~~~~~ 498 (634)
+.-.+..
T Consensus 447 ~~~~G~~ 453 (505)
T TIGR01314 447 LKALGLI 453 (505)
T ss_pred HHhcCcc
Confidence 8766543
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.031 Score=62.50 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=44.8
Q ss_pred CCCeEEEEcCC-cCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCC
Q psy8852 445 DINNVILVGGS-TRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNR 498 (634)
Q Consensus 445 ~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~ 498 (634)
.++.|.++||+ ++++.+.+.+.+.||.++.... +.++.++|||+.|+.-.+..
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~~G~~ 491 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVAAGAY 491 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHHhccC
Confidence 47899999999 9999999999999999986544 45788999999998665543
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.052 Score=60.24 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=56.5
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFTITQHLVNRTILLSSKALMD-ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
+|.++-..+-+-+--....+-+.+++ .+. .++.|.++||+++++.+.+.+.+.+|.++....++ ++.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHH
Confidence 55555543333222222233333443 243 47899999999999999999999999999766655 57799999999
Q ss_pred hHhcCCC
Q psy8852 492 NFLSGNR 498 (634)
Q Consensus 492 ~~~~~~~ 498 (634)
+.-.+..
T Consensus 455 ~~~~G~~ 461 (520)
T PRK10939 455 GVGAGIY 461 (520)
T ss_pred HHHhCCC
Confidence 8665543
|
|
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.055 Score=58.08 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCC
Q psy8852 444 KDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGN 497 (634)
Q Consensus 444 ~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~ 497 (634)
..|+.+.+.||.|+.|.+.+.+.+.+|.++..+.+++. ++.|||+.|+..++.
T Consensus 413 ~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 413 HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 46888999999999999999999999999999888876 999999999887765
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.25 Score=46.74 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHH
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 304 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~ 304 (634)
....+.+.++++.+|++...++.+|.|++.+
T Consensus 156 ~~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 156 KSAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred hHHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 4566889999999999999999999998754
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.22 Score=50.95 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCceeeeecchhHHHHHhh-hccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHH
Q psy8852 277 RQFTKNAAKLAGLNVLRLLNEPTSAAIAYK-LDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 355 (634)
Q Consensus 277 r~~l~~aa~~aGl~~~~li~Ep~AAa~~y~-~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 355 (634)
...+...-+..|++. .+++..+-|.+.|. ..........+++|+|||+|.++.++-.+ + . .....++|...+.
T Consensus 88 ~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~--~--~-~~~Sl~lG~vrl~ 161 (300)
T TIGR03706 88 PEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFE--P--G-EGVSLPLGCVRLT 161 (300)
T ss_pred HHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCC--E--e-EEEEEccceEEhH
Confidence 344445555679877 57777777777663 22221222349999999999999875332 1 1 2234678887777
Q ss_pred HHHH
Q psy8852 356 YCLF 359 (634)
Q Consensus 356 ~~l~ 359 (634)
+.+.
T Consensus 162 e~f~ 165 (300)
T TIGR03706 162 EQFF 165 (300)
T ss_pred HhhC
Confidence 6653
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.05 Score=47.32 Aligned_cols=45 Identities=24% Similarity=0.396 Sum_probs=25.8
Q ss_pred EEEEEeCCCeEEEEEEEEe-CCeEEEEEEcCCCCcc--chhHH--HHHHH
Q psy8852 316 FAVYDLGGGTFDISILKFK-NGVFKVLSVGGDSNLG--GDDFD--YCLFS 360 (634)
Q Consensus 316 vlV~D~GggT~dvsv~~~~-~~~~~v~~~~~~~~lG--G~~id--~~l~~ 360 (634)
++++|+|++++.+++.+.. .+.+.++.......-| |..+. +.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~ 50 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISK 50 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHH
Confidence 5799999999999999873 3444454433211111 66666 66654
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.5 Score=51.32 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCC---HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCc-cceEE
Q psy8852 241 ISAQIFITLKKIAENAVNNRIFGAVITVPAYFN---DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIF 316 (634)
Q Consensus 241 v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~---~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~-~~~~v 316 (634)
.+...+..|+..++...+..+.++.+ |=+... .+.-+.+..+-+..|++.-.+--|-+|--.+++.-..- .....
T Consensus 53 ai~R~~~aL~~f~e~~~~~~~~~v~~-vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~ 131 (492)
T COG0248 53 AIERALSALKRFAELLDGFGAEEVRV-VATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDG 131 (492)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEE-ehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCE
Confidence 34444555555555444445555322 221111 12336678888888998754445555544444443332 26788
Q ss_pred EEEEeCCCeEEEEEEE
Q psy8852 317 AVYDLGGGTFDISILK 332 (634)
Q Consensus 317 lV~D~GggT~dvsv~~ 332 (634)
+|+|+|||+|.+++..
T Consensus 132 lv~DIGGGStEl~~g~ 147 (492)
T COG0248 132 LVIDIGGGSTELVLGD 147 (492)
T ss_pred EEEEecCCeEEEEEec
Confidence 9999999999999886
|
|
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=94.70 E-value=6 Score=40.70 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=29.1
Q ss_pred HcCCceeeeecchhHHHHHhhhcc-CccceEEEEEEeCCCeEEEEEE
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGGTFDISIL 331 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~-~~~~~~vlV~D~GggT~dvsv~ 331 (634)
..|++ +.+.++..|+|++-.... ....++++++.+|.|- -.+++
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 34765 579999999998654332 2234678888888774 44444
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >COG3426 Butyrate kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.1 Score=43.99 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=37.6
Q ss_pred cCCCCeEEEEcCCcCcHHHHHHHHhhcc----CCcCCCCChhhHHHHHHHHH
Q psy8852 443 IKDINNVILVGGSTRMKHIHEGVSNFFK----TTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 443 ~~~i~~ViLvGG~s~~p~v~~~l~~~f~----~~~~~~~~p~~ava~GAa~~ 490 (634)
+.++|.|+|+||.++...+-++|.+... .-++-..|-.+|-|.|+..-
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lRV 345 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALRV 345 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHHH
Confidence 4679999999999999999999987763 23444566778999998643
|
|
| >COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.036 Score=51.69 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=47.1
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCC--hhhHHHHHHHHHHHHHHHHHc
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKS--KIDQDASVKLSTYLNKAYSIL 62 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~--~~~~~~~~~~~~~i~~Ay~~L 62 (634)
+.|.+||++.+ .+..+|+++|+++....|||+..... .+--+.+.++.+++++||+..
T Consensus 114 ~~l~~l~~~~~--~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 114 DALKVLGVEIK--ADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hHHHHhcCchh--hhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999985 55779999999999999999986554 444556778899999999754
|
|
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.16 Score=52.85 Aligned_cols=56 Identities=16% Similarity=0.349 Sum_probs=47.2
Q ss_pred HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhH
Q psy8852 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 437 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
+..+........|++|||.|+...|-+.|.+.||.++..- +..++.|.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 4455666678999999999999999999999999998764 6667889999999764
|
|
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.46 Score=50.92 Aligned_cols=44 Identities=23% Similarity=0.451 Sum_probs=31.4
Q ss_pred EEEEEeCCceEEEEEEE--CCeeEEEecCCCCccccEEEEEecCCcEEecHhH
Q psy8852 135 SIGIDFGTTNSLVAIVR--NNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKA 185 (634)
Q Consensus 135 vvGID~GTt~s~va~~~--~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A 185 (634)
++.+|||+|+|++..++ .+..+++. ....||.| .+ +.+..|...
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv--~~-~Dv~~G~~~ 47 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTV--EP-GDVTIGLNN 47 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCc--Cc-ccHHHHHHH
Confidence 58899999999999999 78877774 33567766 22 235555543
|
|
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=93.49 E-value=11 Score=39.18 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCCCC---ChhhHHHHHHHHHHhHhcC
Q psy8852 428 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSI---DPDKAVVFGAAIQANFLSG 496 (634)
Q Consensus 428 ~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~~~---~p~~ava~GAa~~a~~~~~ 496 (634)
+.+.++.+++.. +++.|+|.||.+...++++.|.+.+ |.+++.+. -.|.+++.|++=+-....+
T Consensus 242 l~~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 242 LVIKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred HHHHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 344555555543 4678999999999999999999988 55554433 3467888888855544443
|
|
| >PRK09698 D-allose kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=13 Score=37.83 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=25.2
Q ss_pred cCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCC
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGG 324 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~Ggg 324 (634)
.|++ +.+.++..|+|++-.........+++.+.+|.|
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG 140 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG 140 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc
Confidence 4775 578999999888644332223457888888876
|
|
| >PRK09557 fructokinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.59 E-value=13 Score=37.82 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=24.9
Q ss_pred cCCceeeeecchhHHHHHhhhcc-CccceEEEEEEeCCC
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGG 324 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~-~~~~~~vlV~D~Ggg 324 (634)
.|++ +.+.++..|+|++-.... ....++++.+.+|.|
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG 133 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG 133 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc
Confidence 4775 578999999998754422 224466777778755
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.12 Score=54.76 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCcCC--CCeEEEEcCCcCcHHHHHHHHhhc------cC--CcCCCCChhhHHHHHHHHHHhH
Q psy8852 428 TILLSSKALMDANLTIKD--INNVILVGGSTRMKHIHEGVSNFF------KT--TLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 428 ~~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~~f------~~--~~~~~~~p~~ava~GAa~~a~~ 493 (634)
+.+++...|.+...+... +..|+|+||+|.+|++.+.|...+ |. .|....||...+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 344444455444322222 789999999999999999998776 32 4567889999999999999875
|
|
| >PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=13 Score=42.44 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=18.5
Q ss_pred CCceEEEEEeCCceEEEEEEE
Q psy8852 131 NKCVSIGIDFGTTNSLVAIVR 151 (634)
Q Consensus 131 ~~~~vvGID~GTt~s~va~~~ 151 (634)
.+.+++|||+|.|++++++++
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALET 36 (638)
T ss_pred CCCCEEEEEcCchhheeeeec
Confidence 456799999999999999986
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.082 Score=45.99 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC---Cceee---------eecch-hHHHHH
Q psy8852 241 ISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG---LNVLR---------LLNEP-TSAAIA 304 (634)
Q Consensus 241 v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aG---l~~~~---------li~Ep-~AAa~~ 304 (634)
-++..|+...+.|++..+.++..+.+++ .....+.+.++++.++ ++.-. ++.+| .|+|++
T Consensus 47 ~i~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 47 DISKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 3445555556666665555566666655 4445566777777776 66656 78888 888764
|
|
| >PF14687 DUF4460: Domain of unknown function (DUF4460) | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.47 Score=40.42 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChh
Q psy8852 17 DMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPF 66 (634)
Q Consensus 17 ~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~ 66 (634)
...+++.+.|.+-+++|||.|++.+. ++...++-.+.+|.-.+.|+.+.
T Consensus 7 ~~~~l~~aLr~Fy~~VHPDlF~~~P~-~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 7 SSPDLRSALRPFYFAVHPDLFGQHPE-EKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhHHHHHHHHHHHHHhCCcccccChH-HHHhhHHHHHHHHHHHHHHhccC
Confidence 35689999999999999999998665 66666666777777777777654
|
|
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.5 Score=47.94 Aligned_cols=75 Identities=16% Similarity=0.322 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCceeeeecchhHHHHHh-hhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHH
Q psy8852 278 QFTKNAAKLAGLNVLRLLNEPTSAAIAY-KLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 355 (634)
Q Consensus 278 ~~l~~aa~~aGl~~~~li~Ep~AAa~~y-~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 355 (634)
..+...-+..|++. .+++..+-|.+.| +....- .....+|+|+|||+|.+++++- +.+ .. ..+.++|.-.+.
T Consensus 75 ~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~--~~~--~~-~~Sl~lG~vrl~ 148 (285)
T PF02541_consen 75 EFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFEN--GKV--VF-SQSLPLGAVRLT 148 (285)
T ss_dssp HHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEET--TEE--EE-EEEES--HHHHH
T ss_pred HHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEEC--Cee--eE-eeeeehHHHHHH
Confidence 34555566679887 4555555555544 332221 4567899999999999997754 222 11 223678887776
Q ss_pred HHH
Q psy8852 356 YCL 358 (634)
Q Consensus 356 ~~l 358 (634)
+.+
T Consensus 149 e~~ 151 (285)
T PF02541_consen 149 ERF 151 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A. |
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.1 Score=47.44 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=57.4
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHH----HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHH
Q psy8852 412 IDMKQFFTITQHLVNRTILLSSKAL----MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGA 487 (634)
Q Consensus 412 itr~~~e~~~~~~~~~~~~~i~~~l----~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GA 487 (634)
.+++++. +..++.+.-..++++ ++++. ++..+-+=||.++..++.+...+.+|.+|.++.+. |..|+||
T Consensus 371 t~~~hi~---RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~-EtTAlGa 443 (499)
T COG0554 371 TTKAHIA---RATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVVL-ETTALGA 443 (499)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeeccccc-hhhHHHH
Confidence 3455554 344444433333333 34443 57888888999999999999999999999876654 7789999
Q ss_pred HHHHhHhcCCCC
Q psy8852 488 AIQANFLSGNRG 499 (634)
Q Consensus 488 a~~a~~~~~~~~ 499 (634)
|+.|..-.+..+
T Consensus 444 A~lAGla~G~w~ 455 (499)
T COG0554 444 AYLAGLAVGFWK 455 (499)
T ss_pred HHHHhhhhCcCC
Confidence 999987666443
|
|
| >PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=90.01 E-value=2.7 Score=43.87 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCC----CCChhhHHHHHHHHHHhHh
Q psy8852 427 RTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT----SIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 427 ~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~----~~~p~~ava~GAa~~a~~~ 494 (634)
-+...|.+.++... ...+.|+++||+++.|.+.+.|++.++.++.. ..+++.-=|..-|++|...
T Consensus 271 ~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 271 LTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 33444445554432 22568999999999999999999999744432 2455544455566666543
|
|
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.78 E-value=4.8 Score=39.10 Aligned_cols=69 Identities=22% Similarity=0.194 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCcCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeeecchhHHHHHhhhcc---CccceEEEEEEe
Q psy8852 246 FITLKKIAENAVNNRIFGAVITVPAYFNDI-QRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK---NIFEGIFAVYDL 321 (634)
Q Consensus 246 L~~l~~~a~~~~~~~~~~~viTVPa~~~~~-qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~---~~~~~~vlV~D~ 321 (634)
..+|++.+++.++.++ .++++-..|... .....++.| ||-+.+..+ ....+..+++|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vA----------------AaNW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVA----------------AANWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHH----------------HhhhHHHHHHHHHhcCCceEEEec
Confidence 4566777777776654 788888877663 222233322 222111111 114567899999
Q ss_pred CCCeEEEEEEE
Q psy8852 322 GGGTFDISILK 332 (634)
Q Consensus 322 GggT~dvsv~~ 332 (634)
|+.|+|+-=+.
T Consensus 138 GSTTtDIIPi~ 148 (330)
T COG1548 138 GSTTTDIIPIK 148 (330)
T ss_pred CCcccceEeec
Confidence 99999987554
|
|
| >PRK03011 butyrate kinase; Provisional | Back alignment and domain information |
|---|
Probab=89.66 E-value=5.4 Score=41.79 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcc----CCcCCCCChhhHHHHHHHHH
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFK----TTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~----~~~~~~~~p~~ava~GAa~~ 490 (634)
++|.|+|.||.+..+.+.+.|++.+. ..+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999999998887763 34445566678999998765
|
|
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=89.63 E-value=12 Score=37.55 Aligned_cols=175 Identities=16% Similarity=0.192 Sum_probs=92.5
Q ss_pred ecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEE-----EEEEcCCCCccchhHHHHHHHHHHHHHhhc
Q psy8852 295 LNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK-----VLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 369 (634)
Q Consensus 295 i~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~-----v~~~~~~~~lGG~~id~~l~~~l~~~~~~~ 369 (634)
+..|+=..++|.......-.+++|.|+-+-|+.+.|- ++.+. .+...| .++ -.+|-.++..+-..-
T Consensus 129 ~aSpEKi~iay~a~~~~~~~~~ivsDiSSNTVtlaVk---~GKIVggidaciGAPG--~lh-GpLDlE~ir~Id~g~--- 199 (326)
T TIGR03281 129 IASPEKVSIAYNAYCLTGFKDFIVSDISSNTVTLLIK---DGKIIGGFDACVGAPG--VLH-GPLDLEAIRNIDAGK--- 199 (326)
T ss_pred cCCHHHHHHHHHHHHHcCCCCEEEEecCCCeEEEEEE---CCEEEccccccccCcc--ccc-CcccHHHHHhcccCc---
Confidence 3566666666655443123678999999999887753 33220 111111 122 344555543222100
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHH------HHHHHHHHHHHHHHHcCCCc
Q psy8852 370 KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQH------LVNRTILLSSKALMDANLTI 443 (634)
Q Consensus 370 ~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~------~~~~~~~~i~~~l~~~~~~~ 443 (634)
-.+-+.||...-..+. .... ....+++||.+.+.. -++.+...+-..+...-...
T Consensus 200 --------------~tan~aFs~aGa~kIa-~~~~----~~~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~ 260 (326)
T TIGR03281 200 --------------KTANEAFSHAGAVKIA-CADK----GVENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLD 260 (326)
T ss_pred --------------ccHHHHHhhcCeeEEe-cccc----cccCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheecc
Confidence 0122233333332222 1111 124567777665522 22222222222222111111
Q ss_pred CCCCeEEEEcC--CcCcH-HHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCC
Q psy8852 444 KDINNVILVGG--STRMK-HIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRG 499 (634)
Q Consensus 444 ~~i~~ViLvGG--~s~~p-~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~ 499 (634)
.....|+|.|- +++.| .+++.|++.+..++.. ... +..|.|+|+.|.-+.+..+
T Consensus 261 ~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~-L~~-ksAA~G~AiIA~dI~gGk~ 317 (326)
T TIGR03281 261 CKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLV-LDS-ESAAIGLALIAEDIFSGKR 317 (326)
T ss_pred CCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEE-ecc-hhhhhhHHHHHHHHhCCcc
Confidence 23458999997 99999 9999999999866643 333 6779999999988776654
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] | Back alignment and domain information |
|---|
Probab=89.38 E-value=14 Score=36.36 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcC
Q psy8852 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTR 457 (634)
Q Consensus 414 r~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 457 (634)
++..+.+...++.....+|+..+++.......-..++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 45667777777777777777777665422223468999999876
|
|
| >PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.42 Score=49.82 Aligned_cols=72 Identities=21% Similarity=0.166 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccC-CcCC----CCChhhHHHHHHHHHHhHh
Q psy8852 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLT----SIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 420 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~~~----~~~p~~ava~GAa~~a~~~ 494 (634)
++.-+..-+...|.+.++.... +++.|+++||+++.|.+.+.|++.++. ++.. ..+|+.-=|.+-|++|...
T Consensus 262 ~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~~ 338 (364)
T PF03702_consen 262 ILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYRR 338 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3333444444555555555432 378999999999999999999999965 3321 2334433344555666544
|
It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B. |
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=88.79 E-value=7.3 Score=39.97 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=38.5
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhccC----CcCCCCCh----hhHHHHHHHHHHhHhcCC
Q psy8852 444 KDINNVILVGGSTRMKHIHEGVSNFFKT----TLLTSIDP----DKAVVFGAAIQANFLSGN 497 (634)
Q Consensus 444 ~~i~~ViLvGG~s~~p~v~~~l~~~f~~----~~~~~~~p----~~ava~GAa~~a~~~~~~ 497 (634)
.+.+.|+|.|-.+++|-+.+.+++.|+. ++. ...+ ....|.|||+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhhcc
Confidence 3678999999999999988887777732 332 1222 234799999999877664
|
The function of this family is unknown. |
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=88.57 E-value=10 Score=46.42 Aligned_cols=76 Identities=5% Similarity=0.010 Sum_probs=48.8
Q ss_pred EeHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCC-cCCCCChhhHHHHHHHH
Q psy8852 412 IDMKQFFTITQHLVNR-TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 412 itr~~~e~~~~~~~~~-~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~~~~~~p~~ava~GAa~ 489 (634)
++-++...-+..+++. ..+.|+......|.++.+. .++..||. =|..--.|.+.+|.+ ++.+.+|.-..|.|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 3445555444444433 4455555555556554332 34444544 468888999999987 77888999999999986
Q ss_pred H
Q psy8852 490 Q 490 (634)
Q Consensus 490 ~ 490 (634)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 4
|
|
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
Probab=87.17 E-value=32 Score=35.55 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCC
Q psy8852 428 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLT 475 (634)
Q Consensus 428 ~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~ 475 (634)
+.+.++++++.. .++.|+|+||.+...++++.+.+.+ |.+++.
T Consensus 229 l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~ 274 (323)
T PRK14878 229 LVEVTERALAHT-----GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYV 274 (323)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEC
Confidence 334444444443 3678999999999999999999977 555544
|
|
| >COG5026 Hexokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.74 E-value=8.7 Score=40.42 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=24.4
Q ss_pred HHhhhcCCCCCcccCCCceEEEEEeCCceEEEEEEE
Q psy8852 116 MALLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVR 151 (634)
Q Consensus 116 ~~~~~~~~p~~~~~p~~~~vvGID~GTt~s~va~~~ 151 (634)
|.++-+..+..+ +..+.++.||||.|+.++|.+.
T Consensus 60 MIP~~v~~~p~g--~e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 60 MIPTWVAPLPTG--NESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred cccccccCCCCC--CCCCCEEEEecCCceEEEEEEE
Confidence 444444444322 3567899999999999999987
|
|
| >PRK13310 N-acetyl-D-glucosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=86.52 E-value=40 Score=34.30 Aligned_cols=39 Identities=23% Similarity=0.196 Sum_probs=26.1
Q ss_pred HHcCCceeeeecchhHHHHHhhhcc-CccceEEEEEEeCCC
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGG 324 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~-~~~~~~vlV~D~Ggg 324 (634)
+..|++ +.+.++..|+|++-.... .....+++.+.+|.|
T Consensus 94 ~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG 133 (303)
T PRK13310 94 ARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG 133 (303)
T ss_pred HHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc
Confidence 334775 578999999998744322 223467888888866
|
|
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=86.14 E-value=0.63 Score=47.33 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCC-cCCCCChhhHHHHHHHHH
Q psy8852 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 420 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~~~~~~p~~ava~GAa~~ 490 (634)
+++-....+.+.|+......+....+. .++.+||.+ |.+-..+.+.+|.+ ++.+..+.-+.|.||++.
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 333344455555555544445443322 345556665 68888999999875 445566788899999864
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >KOG1385|consensus | Back alignment and domain information |
|---|
Probab=82.69 E-value=3.1 Score=43.27 Aligned_cols=156 Identities=20% Similarity=0.223 Sum_probs=84.3
Q ss_pred cCCCceEEEEEeCCceEEEEEEE-CCe----eEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhh
Q psy8852 129 VKNKCVSIGIDFGTTNSLVAIVR-NNI----PEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRF 203 (634)
Q Consensus 129 ~p~~~~vvGID~GTt~s~va~~~-~g~----~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~ 203 (634)
.+...+.+-||=|+|.|++-++. +.. +-.+..+-=...-|-.-+ ...+|......++.+
T Consensus 63 ~~~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSs----------------faddp~~aA~Sl~~L 126 (453)
T KOG1385|consen 63 SIKRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSS----------------FADDPEEAANSLRPL 126 (453)
T ss_pred CCceEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccc----------------cCCChHHHHHhHHHH
Confidence 34578999999999999998887 222 111110000011111122 223455556667777
Q ss_pred cCCCCCCcccC---CCCeEEecCCCceEEE-ecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q psy8852 204 IARDLKNINTN---SFPYDFQNKFGMLHIK-TISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQF 279 (634)
Q Consensus 204 lg~~~~~~~~~---~~~~~i~~~~~~~~~~-~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~ 279 (634)
|......++.. +.|.. +. ..+-..-|.+-...+|..+++..+......+..-.++|=
T Consensus 127 Ld~A~~~vP~~~~~kTPi~---------lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm---------- 187 (453)
T KOG1385|consen 127 LDVAEAFVPREHWKKTPIV---------LKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIM---------- 187 (453)
T ss_pred HHHHHhhCCHhHhccCceE---------EEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeec----------
Confidence 76665554433 22322 22 223367788888899999998877433222222112221
Q ss_pred HHHHHHHcCCceeeeecchhHHH--HHhhhccCc--cceEEEEEEeCCCeEEEEEEE
Q psy8852 280 TKNAAKLAGLNVLRLLNEPTSAA--IAYKLDKNI--FEGIFAVYDLGGGTFDISILK 332 (634)
Q Consensus 280 l~~aa~~aGl~~~~li~Ep~AAa--~~y~~~~~~--~~~~vlV~D~GggT~dvsv~~ 332 (634)
.=.+|-.-|. +.|....-. ....+.|+|+|||+|.++..-
T Consensus 188 -------------~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 188 -------------DGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred -------------cCcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 1112222222 223333211 256899999999999999754
|
|
| >TIGR03723 bact_gcp putative glycoprotease GCP | Back alignment and domain information |
|---|
Probab=82.32 E-value=64 Score=33.18 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCCCC---ChhhHHHHHHHH
Q psy8852 428 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSI---DPDKAVVFGAAI 489 (634)
Q Consensus 428 ~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~~~---~p~~ava~GAa~ 489 (634)
+.+.++.+++.. .++.|+|.||.+...++++.|.+.+ +.+++.+. -.|.+++.|++=
T Consensus 247 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag 309 (314)
T TIGR03723 247 LVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAG 309 (314)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHH
Confidence 345555555543 4678999999999999999999887 55554432 346777777764
|
This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas |
| >PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=81.99 E-value=1.6 Score=43.15 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred eEEEEEeCCceEEEEEEE-CCe
Q psy8852 134 VSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~-~g~ 154 (634)
+++|||+|||++++++++ +|+
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~ 22 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGK 22 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSC
T ss_pred CEEEEEEcccceEEEEEeCCCC
Confidence 589999999999999998 555
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X .... |
| >PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors [] | Back alignment and domain information |
|---|
Probab=81.83 E-value=45 Score=35.05 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=56.6
Q ss_pred EEEeHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCcCCCCe-EEEEcCCcCcHHHHHHHHhhccC-CcCCC-CChhhHHHH
Q psy8852 410 ITIDMKQFFTITQHLVNRT-ILLSSKALMDANLTIKDINN-VILVGGSTRMKHIHEGVSNFFKT-TLLTS-IDPDKAVVF 485 (634)
Q Consensus 410 ~~itr~~~e~~~~~~~~~~-~~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~-~~~~~-~~p~~ava~ 485 (634)
..-.+.++...++..++++ ...++..+++.+ ++. +.|.||.+..-..-..|.+..+. ++..+ .--|..+|.
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 4567788888888877765 566677777766 345 99999999888888888887554 35443 344678999
Q ss_pred HHHHHHhHhcC
Q psy8852 486 GAAIQANFLSG 496 (634)
Q Consensus 486 GAa~~a~~~~~ 496 (634)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999986543
|
The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A. |
| >PRK00976 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.64 E-value=11 Score=38.49 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=40.5
Q ss_pred CCCeEEEEcCCcCcH--HHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCC
Q psy8852 445 DINNVILVGGSTRMK--HIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRG 499 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p--~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~ 499 (634)
+++.|+|-||.++.+ .+.+.+++.+...+ ..-...+.++|||+.|..+.+..+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~--a~LG~dAGaiGAA~iA~~i~~G~~ 317 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKKV--LVLGKESAAIGLALIARDIFNGKK 317 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcccc--cccCCchHHHHHHHHHHHHhCCCc
Confidence 478899999999998 78888888875432 222347889999999987765543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 634 | ||||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 1e-102 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 2e-99 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 1e-91 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 8e-90 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 2e-89 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 3e-89 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 1e-67 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 2e-66 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 2e-66 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 3e-63 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 5e-63 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 4e-58 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 6e-58 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-57 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 2e-57 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-57 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 3e-57 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-57 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-57 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 3e-57 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 3e-57 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-57 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-57 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-57 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-57 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 5e-57 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 5e-57 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 5e-57 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 5e-57 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 1e-56 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 2e-56 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 2e-56 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 2e-56 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 3e-56 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 4e-56 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 4e-56 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 5e-56 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 5e-56 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 8e-56 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-55 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-55 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 2e-55 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 5e-55 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 6e-55 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 6e-55 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 7e-55 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 1e-54 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-54 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 2e-54 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 2e-54 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 3e-54 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 3e-41 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 4e-32 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 6e-32 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 6e-32 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 7e-32 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 2e-29 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 2e-29 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 3e-29 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 1e-27 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 3e-26 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 1e-24 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-24 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 3e-24 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 5e-24 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 9e-24 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 4e-23 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 7e-21 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-20 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 1e-17 | ||
| 1fpo_A | 171 | Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli Le | 6e-15 | ||
| 4it5_A | 174 | Chaperone Hscb From Vibrio Cholerae Length = 174 | 4e-13 | ||
| 3bvo_A | 207 | Crystal Structure Of Human Co-Chaperone Protein Hsc | 4e-11 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 3e-04 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 3e-04 |
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli Length = 171 | Back alignment and structure |
|
| >pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae Length = 174 | Back alignment and structure |
|
| >pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb Length = 207 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 634 | |||
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 1e-151 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 1e-147 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 1e-145 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 1e-133 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 1e-103 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 4e-92 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 4e-90 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 2e-63 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 3e-40 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 1e-39 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 2e-39 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 2e-39 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 3e-39 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 4e-38 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 7e-38 | |
| 1fpo_A | 171 | HSC20, chaperone protein HSCB; molecular chaperone | 2e-31 | |
| 3hho_A | 174 | CO-chaperone protein HSCB homolog; structural geno | 1e-30 | |
| 3bvo_A | 207 | CO-chaperone protein HSCB, mitochondrial precurso; | 3e-29 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 4e-24 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 5e-24 | |
| 3uo3_A | 181 | J-type CO-chaperone JAC1, mitochondrial; structura | 2e-21 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 7e-13 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 2e-10 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 7e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 1e-04 |
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 450 bits (1159), Expect = e-151
Identities = 215/525 (40%), Positives = 311/525 (59%), Gaps = 38/525 (7%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 196 TISSIKRFIARDLKNINT----NSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T+ +IKR I R ++ + P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 311 IFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 366
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 367 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 408
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 409 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 468
NI + + ++ + LVNR+I AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 469 FKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIF 528
F ++PD+AV GAA+Q L+G+ + LLLDV PLSLGIET+GG++ +I
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSLGIETMGGVMTTLIA 413
Query: 529 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 588
+NTTIP +S F+T +DNQ+A+ I V+QGE + + + L F L I P P G +I+
Sbjct: 414 KNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIE 473
Query: 589 VTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
VT+ +DADG+L + A +K SGK++ ITIK +N DEI+ ++D
Sbjct: 474 VTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRD 518
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 435 bits (1121), Expect = e-147
Identities = 206/515 (40%), Positives = 296/515 (57%), Gaps = 49/515 (9%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VA++ +V+ + G PS+V + +G+ VG+ AK Q I N
Sbjct: 5 IGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAK-RQAITNPN 62
Query: 196 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 254
TI SIKR + D K I + +P EISA I LK AE
Sbjct: 63 TIISIKRHMGTDYKVEIEGKQY--------------------TPQEISAIILQYLKSYAE 102
Query: 255 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 314
+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK +
Sbjct: 103 DYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKEEDQT 162
Query: 315 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK---- 370
I VYDLGGGTFD+SIL+ +GVF+V + GD++LGGDDFD + ++V F ++
Sbjct: 163 I-LVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQ-FKQEHGID 220
Query: 371 LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFF 418
LS KD + + + ++ KEL + + L + + +T+ +F
Sbjct: 221 LS-KD-KMALQRLKDAAEKAKKELSGVTQT---QISLPFISANENGPLHLEMTLTRAKFE 275
Query: 419 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 478
++ HLV RT+ +AL DA LT DI+ VILVGGSTR+ + E + ++
Sbjct: 276 ELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVN 335
Query: 479 PDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYS 538
PD+ V GAAIQ ++G + +LLDV PLSLGIET+GG+ K+I RNTTIP S S
Sbjct: 336 PDEVVAIGAAIQGGVIAGEVK---DVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKS 392
Query: 539 GEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 598
FTT DNQT + I V+QGE + + + L F+L IPP P G +I+VT+ +DA+G+
Sbjct: 393 QVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGI 452
Query: 599 LSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633
+ + A + + K++ ITIK ++ +EI+ +K+
Sbjct: 453 VHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKE 487
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 430 bits (1109), Expect = e-145
Identities = 198/510 (38%), Positives = 293/510 (57%), Gaps = 32/510 (6%)
Query: 132 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 191
K ++GID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 61
Query: 192 DPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISGIK---SP 238
+P NT+ KR I R D+K+ +P+ N G ++ G P
Sbjct: 62 NPTNTVFDAKRLIGRRFDDAVVQSDMKH-----WPFMVVNDAGRPKVQVEYKGETKSFYP 116
Query: 239 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEP 298
E+S+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEP
Sbjct: 117 EEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEP 176
Query: 299 TSAAIAYKLDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 357
T+AAIAY LDK + E ++DLGGGTFD+SIL G+F+V S GD++LGG+DFD
Sbjct: 177 TAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNR 236
Query: 358 LFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV-KLSDKKIVN 409
+ + + F +K KD+ + + R K LS + + + L +
Sbjct: 237 MVNHFIAE-FKRKHK-KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFY 294
Query: 410 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 295 TSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFF 354
Query: 470 K-TTLLTSIDPDKAVVFGAAIQANFLSGNRGID-DNFLLLDVIPLSLGIETIGGLVEKII 527
L SI+PD+AV +GAA+QA LSG++ + + LLLDV PLSLGIET GG++ +I
Sbjct: 355 NGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLI 414
Query: 528 FRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARI 587
RNTTIP + FTT+ DNQ + I+V +GE + K+ +L FEL IPP P G +I
Sbjct: 415 KRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 474
Query: 588 KVTYQVDADGLLSIFAYEKISGKKKFITIK 617
+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 475 EVTFDIDANGILNVSAVDKSTGKENKITIT 504
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 406 bits (1045), Expect = e-133
Identities = 113/525 (21%), Positives = 225/525 (42%), Gaps = 54/525 (10%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 5 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 63
Query: 196 TISSIKRFIAR---------DLKNINTNSFPY---DFQNKFGMLHIKTISGIK--SPIEI 241
T++++KR I + K+ F + +K ++ S ++
Sbjct: 64 TVANLKRIIGLDYHHPDFEQESKH-----FTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118
Query: 242 SAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSA 301
+A +K + I I VP ++ + QR +AA++AGLN +R++N+ T+A
Sbjct: 119 AAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAA 178
Query: 302 AIAYKLDKNIF------EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 355
++Y + K I A D+G ++ SI+ FK G KVL D + GG DFD
Sbjct: 179 GVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFD 238
Query: 356 YCLFSWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLSYQSSVKLNVK-LSDKKI 407
+ F K D+ ++ + ++K++LS ++ +V+ + +
Sbjct: 239 LAITEHFADE-FKTKYK-IDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVD 296
Query: 408 VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSN 467
V+ + ++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S
Sbjct: 297 VSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISE 356
Query: 468 FFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVE--- 524
F L T+++ D+A+ GAA S + F D+ P S+ + +
Sbjct: 357 AFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRP-FKFEDIHPYSVSYSWDKQVEDEDH 415
Query: 525 -KIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAG 583
++ ++ P + D A + + +AN+E+ +
Sbjct: 416 MEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQ 473
Query: 584 R-ARIKVTYQVDADGLLSI----------FAYEKISGKKKFITIK 617
+K+ + D GL +I + + KK +TI
Sbjct: 474 DSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIV 518
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 317 bits (815), Expect = e-103
Identities = 153/387 (39%), Positives = 219/387 (56%), Gaps = 35/387 (9%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 196 TISSIKRFIARDLKNINTNS----FPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T+ +IKR I R ++ P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 311 IFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 366
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 367 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 408
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 409 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 468
NI + + ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 469 FKTTLLTSIDPDKAVVFGAAIQANFLS 495
F ++PD+AV GAA+Q L+
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 284 bits (729), Expect = 4e-90
Identities = 143/398 (35%), Positives = 212/398 (53%), Gaps = 33/398 (8%)
Query: 125 DDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKK 184
+ +IGID GTT S V + ++ E++ + G PS V + D + +G
Sbjct: 15 TENLYFQSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF-TDTERLIGDA 73
Query: 185 AKITQNIDPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISG 234
AK ++P NTI KR I R D+K+ +P+ ++ G ++ G
Sbjct: 74 AKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKH-----WPFRVVSEGGKPKVQVEYKG 128
Query: 235 IK---SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291
P EIS+ + +K+IAE + ++ AVITVPAYFND QRQ TK+A + GLNV
Sbjct: 129 ETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNV 188
Query: 292 LRLLNEPTSAAIAYKLDKNIF---EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSN 348
LR++NEPT+AAIAY LDK E ++DLGGGTFD+SIL ++G+F+V S GD++
Sbjct: 189 LRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 248
Query: 349 LGGDDFDYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV- 400
LGG+DFD + S + + F +K KD+ + + R K LS + + +
Sbjct: 249 LGGEDFDNRMVSHLAEE-FKRK-HKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEID 306
Query: 401 KLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKH 460
L + +I +F + L T+ KAL DA L I ++LVGGSTR+
Sbjct: 307 SLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPK 366
Query: 461 IHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGN 497
I + + +FF L SI+PD+AV +GAA+QA L G+
Sbjct: 367 IQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 2e-63
Identities = 77/127 (60%), Positives = 99/127 (77%)
Query: 507 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 566
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 567 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDE 626
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y + E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 627 IKSNLKD 633
I S +KD
Sbjct: 121 IASMIKD 127
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 3e-40
Identities = 55/129 (42%), Positives = 86/129 (66%)
Query: 505 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 564
+DV PLSLGIET+GG+ K+I RNTTIP S F+T D QT + IKV QGE E+
Sbjct: 21 QSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAG 80
Query: 565 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 624
+ ++L F L IPP P G +I+VT+ +DA+G++ + A +K +G+++ I I+ ++
Sbjct: 81 DNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSK 140
Query: 625 DEIKSNLKD 633
D+I++ +K+
Sbjct: 141 DDIENMVKN 149
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 1e-39
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 486 GAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFK 545
G++ + + ++DV PLSLGIET+GG++ +I +NTTIP +S F+T +
Sbjct: 2 GSSHHHHHHGL---VPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAE 58
Query: 546 DNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYE 605
DNQ+A+ I V+QGE + + + L F L I P P G +I+VT+ +DADG+L + A +
Sbjct: 59 DNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKD 118
Query: 606 KISGKKKFITIK 617
K SGK++ ITIK
Sbjct: 119 KNSGKEQKITIK 130
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-39
Identities = 51/110 (46%), Positives = 71/110 (64%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV L+LGIET GG++ +I RNT IP S F+T DNQ + IKV +GE + K+
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 617
+L FEL IPP P G +I+VT+ +DA+G+L + A +K +GK + ITI
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITIT 113
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 2e-39
Identities = 51/110 (46%), Positives = 73/110 (66%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV PLSLGIET GG++ +I RNT IP FTT+ DNQ ++I+V +GE + ++
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 617
L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK ITI+
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQ 113
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 3e-39
Identities = 48/110 (43%), Positives = 75/110 (68%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV PL+LGIET+GG++ K+I RNT IP S F+T D+Q+A++I + +GE +V +
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 617
L NF++ IPP P G +I+VT+++D +G+L + A +K +G K +TI
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTIT 113
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 4e-38
Identities = 62/129 (48%), Positives = 89/129 (68%)
Query: 505 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 564
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAA 61
Query: 565 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 624
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK +N
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNE 121
Query: 625 DEIKSNLKD 633
DEI+ ++D
Sbjct: 122 DEIQKMVRD 130
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 7e-38
Identities = 54/126 (42%), Positives = 87/126 (69%)
Query: 508 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 567
DV PLSLGIET+GG++ K+I RNTTIP S F+T D QT + IKV QGE E+ + +
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 568 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 627
+L F L IPP P G +++VT+ +DA+G++++ A ++ +GK++ I I+ ++ D+I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 628 KSNLKD 633
++ +K+
Sbjct: 124 ENMIKE 129
|
| >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-31
Identities = 37/118 (31%), Positives = 67/118 (56%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+YF F LP + +D L + + Q++ HPD F S+ +Q A+V+ S +N+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 63 KDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQ 120
+ P +R+ YL L+G DL ++ + FL +Q++ RE L I+ KD+ + + ++
Sbjct: 62 RHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIK 119
|
| >3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 114 bits (285), Expect = 3e-29
Identities = 35/119 (29%), Positives = 64/119 (53%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
++YF + + F +D L Y Q+ +HPD F Q+S+ ++D S K ST +N AY
Sbjct: 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102
Query: 62 LKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQ 120
L P R +YL KL+GI++ + + FL + M+ E L+ +++ + ++++
Sbjct: 103 LLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVK 161
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-24
Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 50/258 (19%)
Query: 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293
G+ + QI LK E + + +F A +P + + AGL ++
Sbjct: 65 GLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVT 124
Query: 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353
L++EP +AA A ++ V D+GGGT I++++ D GG
Sbjct: 125 LVDEPVAAARALGINDG------IVVDIGGGTTGIAVIEKGKITAT-----FDEPTGGTH 173
Query: 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 413
L K+ +++ + IK+ S + V+ +K+ I
Sbjct: 174 LSLVLAGSY-------KIPFEE-------AETIKKDFSRHREIMRVVRPVIEKMALIV-- 217
Query: 414 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 473
+ + + + T+ V +VGG+ + E S F +
Sbjct: 218 -------------------KEVIKNYDQTLP----VYVVGGTAYLTGFSEEFSRFLGKEV 254
Query: 474 LTSIDPDKAVVFGAAIQA 491
I P G A+
Sbjct: 255 QVPIHPLLVTPLGIALFG 272
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 5e-24
Identities = 53/360 (14%), Positives = 114/360 (31%), Gaps = 45/360 (12%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+ ID G+TN + ++ S + + + G K ++ +
Sbjct: 3 VFIDDGSTNIKLQWQESDGT--------IKQHISPNSFKREWAVSFGDKKVFNYTLNGEQ 54
Query: 196 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 255
A NI + Y N + H SG+ E+ I TL
Sbjct: 55 YSFDPISPDAVVTTNIA---WQYSDVNVVAVHHALLTSGL-PVSEVD--IVCTLPLTEYY 108
Query: 256 AVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGI 315
NN+ I + +++ T N + ++++ E A + + + +
Sbjct: 109 DRNNQPNTENI--ERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSL 166
Query: 316 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKD 375
+ DLGG T DIS + + + + GDS+LG + +
Sbjct: 167 LII-DLGGTTLDISQV--MGKLSGISKIYGDSSLGVSLVTSAVKDAL------------- 210
Query: 376 VNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 435
+ S + + + D + I+ + +I +N + +
Sbjct: 211 --------SLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQR 262
Query: 436 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI---DPDKAVVFGAAIQAN 492
+++ +V+++GG + I + V + + +V G + N
Sbjct: 263 VLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 2e-21
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 1 MKNYFDFFNL-----PKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYL 55
+++ F + ID L K Y Q + HPD Q S + S+ L
Sbjct: 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGS--------EQSSTL 61
Query: 56 NKAYSILKDPFLRSIYLCKL-NGIDL----NTKLNLNFSHDFLEQQMKWRETLSIIKNKK 110
N+AY LKDP RS Y+ KL IDL + L + + + LS + ++
Sbjct: 62 NQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEA 121
Query: 111 DKVKFMALLQ 120
+
Sbjct: 122 GVKLLEKQNK 131
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 7e-13
Identities = 48/370 (12%), Positives = 99/370 (26%), Gaps = 75/370 (20%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+G+D G ++ V V + PS +G K + +
Sbjct: 24 VGLDVGYGDTKVIGVDGKR----------IIFPSRWAVTETESWGIGGKIPVLSTDGGQT 73
Query: 196 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 255
K +++ + E I L + +
Sbjct: 74 KFIYGKYASGNNIRVPQGDGRLASK-------------------EAFPLIAAALWESGIH 114
Query: 256 AVNNRIFGAVIT-VPAYFNDIQRQFTKNAAK------------LAGLNVLRLLNEPTSAA 302
+ + + + P D++ + K A + + N+ RL+ P
Sbjct: 115 NDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVG 174
Query: 303 IAYKL----DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 358
A L G V D+G T D+ + + V+ + +G D
Sbjct: 175 AALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAIS-- 231
Query: 359 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 418
+ K+ + L Q ++ V K++ +
Sbjct: 232 ---ALSRKIAKETGFVVPFDLA------------QEALSHPVMFRQKQVGGPEVSGPILE 276
Query: 419 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI- 477
+ ++ L + + ++I VGG + + I + TL+
Sbjct: 277 DLANRIIENI----RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKP 327
Query: 478 -DPDKAVVFG 486
D A G
Sbjct: 328 EDLQFANALG 337
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 60/389 (15%), Positives = 119/389 (30%), Gaps = 70/389 (17%)
Query: 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 190
+ + +DFG I +IPS + + + +
Sbjct: 2 SNVYVMALDFGNGFVKGKINDEKF-----------VIPSRIGRKTNENNQLKGFVDNKLD 50
Query: 191 IDPKNTISSIKR---FIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFI 247
+ + F K NT +++ + K + + I +
Sbjct: 51 VSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDIKSFKDL--------VECSIGL 102
Query: 248 TLKKIAENAVNNRIFGAVITVP--AYFNDIQRQFTKNAAKLAGLNV-----------LRL 294
+++ E VN I +P D Q +F K K + + +++
Sbjct: 103 LAREVPEEVVNVVI---ATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKI 159
Query: 295 LNEPTSAAIAYKLD-----KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNL 349
+ +P + ++ K EG ++V D G GT I ++N V N
Sbjct: 160 VAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT--YQNMKR-VEEESFVINK 216
Query: 350 GGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVN 409
G DF +S K I R I++ L Y+ KL+ K +++
Sbjct: 217 GTIDFY---------KRIASHVS-KKSEGASITPRMIEKGLEYK-----QCKLNQKTVID 261
Query: 410 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 469
+ + L+ + I I+ +I+ GG + + +S+++
Sbjct: 262 FKDEFYK---EQDSLIEEVM----SNFEITVGNINSIDRIIVTGGGANI--HFDSLSHYY 312
Query: 470 KTTLLTSIDPDKAVVFGAAIQANFLSGNR 498
+ D + V G L
Sbjct: 313 SDVFEKADDSQFSNVRGYEKLGELLKNKV 341
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 7e-10
Identities = 37/324 (11%), Positives = 98/324 (30%), Gaps = 44/324 (13%)
Query: 180 YVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPI 239
+GK K T + + + +I NS + K ++ + +
Sbjct: 21 LIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETS 80
Query: 240 EISAQIFI-TLKKIAE--NAVNNRIFGAVITVPA--YFNDIQRQFTKNAAKLAG------ 288
+ + + I + ++ N V+ P N ++ ++ K G
Sbjct: 81 KTNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKV 140
Query: 289 ------LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLS 342
+ + + + + + +N AV D GG S+ ++N V S
Sbjct: 141 DDKEYSFEITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSL--YRNCVV-NPS 197
Query: 343 VGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKL 402
G D + + ++ + L
Sbjct: 198 ERFIEEHGVKDLIIRVGDALTDLNNGNLITNEQAESA----------------------L 235
Query: 403 SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIH 462
++ + + T+ + + + + + K + + ++++I +GG+T+ +
Sbjct: 236 NNGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LK 293
Query: 463 EGVSNFFKTTLLTSIDPDKAVVFG 486
E +S + + + + G
Sbjct: 294 EQISKTYPNNSIITNNSQWTTCEG 317
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 8e-08
Identities = 72/441 (16%), Positives = 126/441 (28%), Gaps = 135/441 (30%)
Query: 206 RDLKNINTNSFPYDFQNK---------FGMLHIKTISGIKSPIEISAQIFITLKKIAENA 256
+D+ ++ ++F +F K I I K + + ++F TL E
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 257 VNNRIFGAVITVPAY----------------------------FNDIQRQFTKNAAKLAG 288
V + V+ Y +ND Q F K
Sbjct: 79 V-QKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAK------- 128
Query: 289 LNVLR--LLNEPTSAAIAYKLDKNIFEGIFAVYDLGG-GTFDISILKFKNGVFKVLSVGG 345
NV R + A +L + + + + G G + + L V
Sbjct: 129 YNVSRLQPYLKLRQA--LLELRPA--KNVL-IDGVLGSGK---TWV--------ALDVCL 172
Query: 346 DSNLGGDDFDYCLFSWI-VKN-----AFLKKLSYKDVNILMIKSREIKELLSYQSSVKLN 399
+ D+ +F W+ +KN L+ L +L + S++KL
Sbjct: 173 SYKV-QCKMDFKIF-WLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLR 226
Query: 400 VKLSDKKIVNITIDMKQFFTITQH----LV-----NRTIL----LSSKALMDANLTIKDI 446
I +I ++++ + LV N LS K L LT +
Sbjct: 227 -------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL----LTTRFK 275
Query: 447 NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFL- 505
V + HI + TL PD+ ++ +L L
Sbjct: 276 -QVTDFLSAATTTHI---SLDHHSMTL----TPDEVK----SLLLKYL----DCRPQDLP 319
Query: 506 --LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKV---VQGED 560
+L P L I I + + + ++ I+ V
Sbjct: 320 REVLTTNPRRLSI--IAESIRDGLATWDN--------WKHVNCDKLTTIIESSLNVLEPA 369
Query: 561 ELVKNCQVLANF-ELRDIPPM 580
E K L+ F IP +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTI 390
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 48/243 (19%), Positives = 82/243 (33%), Gaps = 60/243 (24%)
Query: 2 KNYFDFFNLPKCFNIDMDLL-----DKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLN 56
K + P +I LL D I + + + + S +++ K ST
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQP--KESTI-- 426
Query: 57 KAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFS-HDFLEQQMKWRETL---SIIKNKKDK 112
+ SIYL +L KL ++ H + +T +I D+
Sbjct: 427 ---------SIPSIYL------ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 113 --VKFMA--LLQISEPDDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIP 168
+ L I P+ +++ + +DF L +R+ D +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRM---VFLDF---RFLEQKIRH-------DSTAWNASG 518
Query: 169 SIVRYLPDGKIYVGKKAKITQNIDPKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGM 226
SI+ L K Y K I N DPK +++I F L I N + + +
Sbjct: 519 SILNTLQQLKFY---KPYICDN-DPKYERLVNAILDF----LPKIEENLICSKYTD---L 567
Query: 227 LHI 229
L I
Sbjct: 568 LRI 570
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Length = 344 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 61/235 (25%), Positives = 94/235 (40%), Gaps = 72/235 (30%)
Query: 136 IGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNID 192
IGID GT N+LV +R I V+ + PS++ + VG +AK
Sbjct: 6 IGIDLGTANTLV-FLRGKGI--VVNE-------PSVIAIDSTTGEILKVGLEAKNMIGKT 55
Query: 193 PKNTISSIKRFIARDLKN--INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 250
P I +I R +++ I D+ ML + FI
Sbjct: 56 PAT-IKAI-----RPMRDGVIA------DYTVALVML----------------RYFI--N 85
Query: 251 KIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
K A VI VP D++R+ +A AG + + L+ EP +AAI L
Sbjct: 86 K----AKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNL 141
Query: 308 DKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG----DS-NLGGDDFD 355
+ + E G V D+GGGT +++ V+S+G +S + GD+ D
Sbjct: 142 N--VEEPSGNMVV-DIGGGTTEVA----------VISLGSIVTWESIRIAGDEMD 183
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 634 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.96 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.95 | |
| 3hho_A | 174 | CO-chaperone protein HSCB homolog; structural geno | 99.95 | |
| 1fpo_A | 171 | HSC20, chaperone protein HSCB; molecular chaperone | 99.94 | |
| 3bvo_A | 207 | CO-chaperone protein HSCB, mitochondrial precurso; | 99.94 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.94 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.94 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.94 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.93 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.93 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.93 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.93 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.93 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 99.93 | |
| 3uo3_A | 181 | J-type CO-chaperone JAC1, mitochondrial; structura | 99.91 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.9 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.89 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 99.88 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.87 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.8 | |
| 2l6l_A | 155 | DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, | 99.79 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.75 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.74 | |
| 1wjz_A | 94 | 1700030A21RIK protein; J-domain, DNAJ like protein | 99.72 | |
| 2lgw_A | 99 | DNAJ homolog subfamily B member 2; J domain, HSJ1A | 99.68 | |
| 2ej7_A | 82 | HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati | 99.67 | |
| 2dmx_A | 92 | DNAJ homolog subfamily B member 8; DNAJ J domain, | 99.66 | |
| 1hdj_A | 77 | Human HSP40, HDJ-1; molecular chaperone; NMR {Homo | 99.66 | |
| 2dn9_A | 79 | DNAJ homolog subfamily A member 3; J-domain, TID1, | 99.65 | |
| 2yua_A | 99 | Williams-beuren syndrome chromosome region 18 prot | 99.65 | |
| 2ctp_A | 78 | DNAJ homolog subfamily B member 12; J-domain, chap | 99.64 | |
| 2qsa_A | 109 | DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s | 99.63 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.63 | |
| 2och_A | 73 | Hypothetical protein DNJ-12; HSP40, J-domain, chap | 99.62 | |
| 2cug_A | 88 | Mkiaa0962 protein; DNAJ-like domain, structural ge | 99.62 | |
| 2ctr_A | 88 | DNAJ homolog subfamily B member 9; J-domain, chape | 99.62 | |
| 2ctq_A | 112 | DNAJ homolog subfamily C member 12; J-domain, chap | 99.61 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.61 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.61 | |
| 2ctw_A | 109 | DNAJ homolog subfamily C member 5; J-domain, chape | 99.58 | |
| 2o37_A | 92 | Protein SIS1; HSP40, J-domain, cochaperone, APC900 | 99.58 | |
| 1bq0_A | 103 | DNAJ, HSP40; chaperone, heat shock, protein foldin | 99.57 | |
| 2ys8_A | 90 | RAB-related GTP-binding protein RABJ; DNAJ domain, | 99.54 | |
| 1faf_A | 79 | Large T antigen; J domain, HPD motif, anti-paralle | 99.5 | |
| 1gh6_A | 114 | Large T antigen; tumor suppressor, oncoprotein, an | 99.5 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.48 | |
| 1n4c_A | 182 | Auxilin; four helix bundle, protein binding; NMR { | 99.46 | |
| 2pf4_E | 174 | Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, | 99.46 | |
| 3ag7_A | 106 | Putative uncharacterized protein F9E10.5; J-domain | 99.43 | |
| 1iur_A | 88 | KIAA0730 protein; DNAJ like domain, riken structur | 99.42 | |
| 2qwo_B | 92 | Putative tyrosine-protein phosphatase auxilin; cha | 99.38 | |
| 3lz8_A | 329 | Putative chaperone DNAJ; structure genomics, struc | 99.37 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 99.37 | |
| 2guz_A | 71 | Mitochondrial import inner membrane translocase su | 99.32 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 99.27 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 99.24 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.99 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.83 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 98.36 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.36 | |
| 2guz_B | 65 | Mitochondrial import inner membrane translocase su | 98.14 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.95 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 97.04 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 96.82 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 96.74 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 96.69 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 96.65 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 96.62 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 96.6 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 96.5 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 96.35 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 96.33 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 96.3 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 96.27 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 96.26 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 96.25 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 96.24 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 96.19 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 96.17 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 96.05 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 96.0 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 95.97 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 95.91 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 95.85 | |
| 2gup_A | 292 | ROK family protein; sugar kinase, streptococcus pn | 95.79 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 95.77 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 95.73 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 95.65 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 95.63 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 95.61 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 95.6 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 95.56 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 95.53 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 95.48 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 95.46 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 95.33 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 95.27 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 95.04 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 94.53 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 94.14 | |
| 3htv_A | 310 | D-allose kinase, allokinase; NP_418508.1, structur | 93.81 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 93.01 | |
| 2yhw_A | 343 | Bifunctional UDP-N-acetylglucosamine 2-epimerase/N | 92.81 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 92.1 | |
| 2q2r_A | 373 | Glucokinase 1, putative; ATPase hexose kinase fami | 91.15 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 89.98 | |
| 2e1z_A | 415 | Propionate kinase; TDCD, native, acetate kinase, n | 86.92 | |
| 3zx3_A | 452 | Ectonucleoside triphosphate diphosphohydrolase 1; | 86.75 | |
| 3o8m_A | 485 | Hexokinase; rnaseh-like fold, glycolysis, glucose | 84.05 | |
| 4g9i_A | 772 | Hydrogenase maturation protein HYPF; zinc finger, | 81.69 | |
| 1g99_A | 408 | Acetate kinase; alpha/beta, askha (acetate and sug | 81.63 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 81.01 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-89 Score=758.11 Aligned_cols=499 Identities=41% Similarity=0.635 Sum_probs=471.8
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC--
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN-- 210 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~-- 210 (634)
..+||||||||||++|++.+|.++++.|..|.+.+||+|+|.+++.++||..|..+...+|.++++++||+||+.+++
T Consensus 2 ~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 81 (605)
T 4b9q_A 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHH
T ss_pred CcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHH
Confidence 458999999999999999999999999999999999999998877899999999999999999999999999999887
Q ss_pred cccC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q psy8852 211 INTN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLA 287 (634)
Q Consensus 211 ~~~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~a 287 (634)
++.. .+||++. ..+|.+.+.+.++.++|+++++++|++|++.++.+++.++..+|||||++|++.||+++++|++.|
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~A 161 (605)
T 4b9q_A 82 VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA 161 (605)
T ss_dssp HHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred HHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 3333 7899998 788889999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeC----CeEEEEEEcCCCCccchhHHHHHHHHHH
Q psy8852 288 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIV 363 (634)
Q Consensus 288 Gl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~----~~~~v~~~~~~~~lGG~~id~~l~~~l~ 363 (634)
||+++++++||+|||++|+......+..++|||+||||||+|++++.+ +.++++++.++.++||.+||..|++|+.
T Consensus 162 Gl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~ 241 (605)
T 4b9q_A 162 GLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241 (605)
T ss_dssp TCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred CCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHH
Confidence 999999999999999999988765678999999999999999999988 8999999999999999999999999999
Q ss_pred HHHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEe-c----CCceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q psy8852 364 KNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-S----DKKIVNITIDMKQFFTITQHLVNRTILLSS 433 (634)
Q Consensus 364 ~~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~-~----~g~~~~~~itr~~~e~~~~~~~~~~~~~i~ 433 (634)
++|+... .+++.+.+|+.+||++|+.||....+.+.++. . ++.++.++|||++|++++.|+++++..+++
T Consensus 242 ~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v~ 321 (605)
T 4b9q_A 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLK 321 (605)
T ss_dssp HHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 9987654 47899999999999999999999998888764 1 236788999999999999999999999999
Q ss_pred HHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeecccc
Q psy8852 434 KALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLS 513 (634)
Q Consensus 434 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 513 (634)
++|+.+++...+|+.|+||||+|++|+|++.|++.||.++..+.||++|||+|||++|+.+++..+ ++.+.|++|++
T Consensus 322 ~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~~~---~~~l~dv~p~s 398 (605)
T 4b9q_A 322 VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVK---DVLLLDVTPLS 398 (605)
T ss_dssp HHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTSSC---SEEEECBCSSC
T ss_pred HHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhcCCCC---ceEEEeeeeeE
Confidence 999999999999999999999999999999999999999999999999999999999999988644 89999999999
Q ss_pred ceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEE
Q psy8852 514 LGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 593 (634)
Q Consensus 514 ~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~ 593 (634)
|||++.+|.|.+||+||+++|+++++.|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.|.|.++|+|+|++
T Consensus 399 lgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~i 478 (605)
T 4b9q_A 399 LGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDI 478 (605)
T ss_dssp EEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEE
T ss_pred EEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 594 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 594 d~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
|.||+|+|++.++.||++.+++|+++.+||++||++|++++
T Consensus 479 d~~gil~v~a~~~~tg~~~~i~i~~~~~ls~~ei~~~~~~~ 519 (605)
T 4b9q_A 479 DADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDA 519 (605)
T ss_dssp CTTSCEEEEEEETTTCCEECCEEESCCSCCHHHHHHHHHHH
T ss_pred cCCcEEEEEEEecCCCcEEEEEecCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999863
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-86 Score=734.76 Aligned_cols=497 Identities=42% Similarity=0.640 Sum_probs=463.2
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc--
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-- 211 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~-- 211 (634)
.+||||||||||++|++.+|.++++.|+.|.+.+||+|+|.++++++||..|+.+...+|.++++++||+||+.+.+.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~v 82 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (605)
T ss_dssp -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTTH
T ss_pred CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHHH
Confidence 479999999999999999999999999999999999999987778999999999999999999999999999988652
Q ss_pred ccC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC
Q psy8852 212 NTN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 288 (634)
Q Consensus 212 ~~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aG 288 (634)
+.. .+||+++ ..+|.+.+.+.+..++|+++.+++|++|++.++.+++.++..+|||||++|++.||+++++|++.||
T Consensus 83 ~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~AG 162 (605)
T 2kho_A 83 QRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAG 162 (605)
T ss_dssp HHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHTTT
T ss_pred HHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 222 5789887 7788998888778899999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEe----CCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 289 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 289 l~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~----~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
++++++++||+|||++|+......+..+||||+||||||+|++++. ++.++++++.|+.++||.+||+.|++|+.+
T Consensus 163 l~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 2kho_A 163 LEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp CEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHHHHH
T ss_pred CceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999998764367899999999999999999998 789999999999999999999999999999
Q ss_pred HHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEe-c---CC-ceeEEEEeHHHHHHHHHHHHHHHHHHHHH
Q psy8852 365 NAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-S---DK-KIVNITIDMKQFFTITQHLVNRTILLSSK 434 (634)
Q Consensus 365 ~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~-~---~g-~~~~~~itr~~~e~~~~~~~~~~~~~i~~ 434 (634)
+|+.+. .+++.+.+|+.+||++|+.||....+.+.++. . +| .++.++|||++|+++++|+++++..++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 322 (605)
T 2kho_A 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKV 322 (605)
T ss_dssp HHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 986543 46889999999999999999999888888773 2 23 46778999999999999999999999999
Q ss_pred HHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccc
Q psy8852 435 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSL 514 (634)
Q Consensus 435 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~ 514 (634)
+|+.+++...+|+.|+||||+|++|+|++.|++.||.++..+.||++|||+|||++|+.+++.. +++.+.|++|++|
T Consensus 323 ~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~~---~~~~l~dv~p~sl 399 (605)
T 2kho_A 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSL 399 (605)
T ss_dssp HHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTSC---CCCCCSBCCCCCE
T ss_pred HHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcCCc---cCceEEeeeeeec
Confidence 9999999989999999999999999999999999999888999999999999999999888753 4788999999999
Q ss_pred eEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEEC
Q psy8852 515 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVD 594 (634)
Q Consensus 515 gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d 594 (634)
|+++.+|.|.+||+||+++|++++..|++..|+|+.+.|.+|+|++....+|..||+|.|.++|+.|.|.++|+|+|++|
T Consensus 400 gi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 479 (605)
T 2kho_A 400 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479 (605)
T ss_dssp EEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEEC
T ss_pred cccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 595 ADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 595 ~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
.+|+|+|++.++.+|++.+++|+++.+||++||++|+++
T Consensus 480 ~~gil~v~a~~~~tg~~~~i~i~~~~~ls~~~i~~~~~~ 518 (605)
T 2kho_A 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRD 518 (605)
T ss_dssp TTSCEEEEEEETTTCCEEEEEECTTSSCCHHHHHHHHHH
T ss_pred CCCceeEEEEEcCCCceeecccccccCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999976
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-84 Score=716.94 Aligned_cols=499 Identities=38% Similarity=0.617 Sum_probs=460.5
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC--
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN-- 210 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~-- 210 (634)
..+||||||||||++|++.+|.++++.++.|++.+||+|+|.++ .++||..|..+...+|.++++++||+||+.+.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 82 (554)
T 1yuw_A 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAV 82 (554)
T ss_dssp CCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSS-CEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSH
T ss_pred CCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCC-cEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHH
Confidence 34799999999999999999999999999999999999999765 599999999999999999999999999999876
Q ss_pred cccC--CCCeEEecCCCceEEEec--C--cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q psy8852 211 INTN--SFPYDFQNKFGMLHIKTI--S--GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAA 284 (634)
Q Consensus 211 ~~~~--~~~~~i~~~~~~~~~~~~--~--~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa 284 (634)
++.. .+||.+...+|.+.+.+. + +.++|+++++++|++|++.++.+++.++..+|||||++|++.||+++++|+
T Consensus 83 v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~ 162 (554)
T 1yuw_A 83 VQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162 (554)
T ss_dssp HHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 2322 689999866777776642 3 579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeecchhHHHHHhhhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHH
Q psy8852 285 KLAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV 363 (634)
Q Consensus 285 ~~aGl~~~~li~Ep~AAa~~y~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 363 (634)
+.||++++.+++||+|||++|+..... .+..++|||+||||||+|++++.++.++++++.++..+||++||+.|++|+.
T Consensus 163 ~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~ 242 (554)
T 1yuw_A 163 TIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242 (554)
T ss_dssp HTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred HHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999887642 4689999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8852 364 KNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALM 437 (634)
Q Consensus 364 ~~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~ 437 (634)
++|+.+. .+++.+.+|+.+||++|+.||......+.++ +.+|.++...|+|++|+++++|+++++...++++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~ 322 (554)
T 1yuw_A 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALR 322 (554)
T ss_dssp HHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886543 4688999999999999999999988888776 357888999999999999999999999999999999
Q ss_pred HcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhcc-CCcCCCCChhhHHHHHHHHHHhHhcCC--CCCCCceeEeeeccccc
Q psy8852 438 DANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGN--RGIDDNFLLLDVIPLSL 514 (634)
Q Consensus 438 ~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~ava~GAa~~a~~~~~~--~~~~~~~~~~~~~~~~~ 514 (634)
.+++...+|+.|+||||+|++|+|++.|++.|+ .++..+.||++|||+|||++|+.+++. .. .+++.+.|++|++|
T Consensus 323 ~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~-~~~~~~~dv~p~sl 401 (554)
T 1yuw_A 323 DAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSEN-VQDLLLLDVTPLSL 401 (554)
T ss_dssp HTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCC-TTSSCCCCBCSSCE
T ss_pred HcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCcccc-ccceEEEEeeeeEE
Confidence 999998999999999999999999999999996 777788999999999999999998874 22 45788999999999
Q ss_pred eEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEEC
Q psy8852 515 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVD 594 (634)
Q Consensus 515 gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d 594 (634)
|+++.++.+.+||+||++||+++++.|++..|+|+.+.|.+|||++....+|..||++.|.++|+.|.|.++|+|+|++|
T Consensus 402 gi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 481 (554)
T 1yuw_A 402 GIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDID 481 (554)
T ss_dssp EEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEEC
T ss_pred EEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEecCCeEEEEEEecC-CCCCHHHHHHhhhc
Q psy8852 595 ADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKSNLKD 633 (634)
Q Consensus 595 ~~g~l~v~~~~~~~g~~~~~~i~~~-~~~~~~ei~~~~~~ 633 (634)
.+|+|+|++.++.+|++.+++|+++ .+||++||++|+++
T Consensus 482 ~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~ 521 (554)
T 1yuw_A 482 ANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQE 521 (554)
T ss_dssp TTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHH
T ss_pred cCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999887 46999999999876
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-82 Score=711.86 Aligned_cols=494 Identities=23% Similarity=0.343 Sum_probs=449.3
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc--c
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI--N 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~--~ 212 (634)
+||||||||||++|++.+|.++++.|+.|++.+||+|+|.++ .++||..|..+...+|.++++++||+||+.+++. +
T Consensus 4 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~ 82 (675)
T 3d2f_A 4 PFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-NRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFE 82 (675)
T ss_dssp CEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSS-SEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTHH
T ss_pred EEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCC-cEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHHH
Confidence 799999999999999999999999999999999999999765 5999999999999999999999999999998763 2
Q ss_pred cC--CCCeEEe-cCCCceEEEec--C--cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q psy8852 213 TN--SFPYDFQ-NKFGMLHIKTI--S--GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285 (634)
Q Consensus 213 ~~--~~~~~i~-~~~~~~~~~~~--~--~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~ 285 (634)
.. ++||+++ ..+|.+.+.+. + ..++|+++++++|++|++.++.+++.++..+|||||++|++.||+++++|++
T Consensus 83 ~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 162 (675)
T 3d2f_A 83 QESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAAR 162 (675)
T ss_dssp HHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 22 7899988 56788877653 3 4799999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhccC------ccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHH
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDKN------IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 359 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~~------~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 359 (634)
.||++++++++||+|||++|+.... ..+.++||||+||||||+|++++.++.++++++.++..+||++||+.|+
T Consensus 163 ~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~l~ 242 (675)
T 3d2f_A 163 IAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAIT 242 (675)
T ss_dssp HTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHH
T ss_pred HcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHHHH
Confidence 9999999999999999999987652 2568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q psy8852 360 SWIVKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSS 433 (634)
Q Consensus 360 ~~l~~~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~ 433 (634)
+|+.++|+... .+++.+.+|+.+||++|+.||....+.+.++ +.+|.++.++|||++|++++.|+++++..+++
T Consensus 243 ~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~i~ 322 (675)
T 3d2f_A 243 EHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVT 322 (675)
T ss_dssp HHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 99999886543 4688999999999999999999887777776 35678899999999999999999999999999
Q ss_pred HHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeecccc
Q psy8852 434 KALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLS 513 (634)
Q Consensus 434 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 513 (634)
++|+.++++..+|+.|+||||+|++|+|++.|++.||.++..+.||++|||+|||++|+.+++.+. .+++.+.|++|++
T Consensus 323 ~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~-v~~~~l~Dv~p~s 401 (675)
T 3d2f_A 323 KALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLR-VRPFKFEDIHPYS 401 (675)
T ss_dssp HHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCC-CCCCEEEEEECSC
T ss_pred HHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCCCCc-ccceEEEeeeecc
Confidence 999999999899999999999999999999999999998888999999999999999999998765 5689999999999
Q ss_pred ceEEEecc----eeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccc-cCceeeEEEEeCCCCCCCCcc-EE
Q psy8852 514 LGIETIGG----LVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK-NCQVLANFELRDIPPMPAGRA-RI 587 (634)
Q Consensus 514 ~gi~~~~~----~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~-~~~~lg~~~l~~~~~~~~g~~-~i 587 (634)
|||++.++ .+.+||+||+++|++++..|++..+++ +.+. |+|++..+. +|..||+|.|.++|+.|.|.+ +|
T Consensus 402 lgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~~~~i 478 (675)
T 3d2f_A 402 VSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTPEQIANWEITGVQLPEGQDSVPV 478 (675)
T ss_dssp EEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCCSEEEEEEEECCCCCSSCSCEEE
T ss_pred eEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccCceeeEEEecCcCCCCCCCcceE
Confidence 99999877 499999999999999999998765443 4333 789988887 899999999999999999974 99
Q ss_pred EEEEEECCCeeEEEEEE----------EecCCeEEEEEEecCC-CCCHHHHHHhhhc
Q psy8852 588 KVTYQVDADGLLSIFAY----------EKISGKKKFITIKPFY-NMNLDEIKSNLKD 633 (634)
Q Consensus 588 ~v~~~~d~~g~l~v~~~----------~~~~g~~~~~~i~~~~-~~~~~ei~~~~~~ 633 (634)
+|+|++|.+|+|+|++. ++.+|++.+++|+++. +||++||++|+++
T Consensus 479 ~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~ 535 (675)
T 3d2f_A 479 KLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEK 535 (675)
T ss_dssp EEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHH
T ss_pred EEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999996 7889999999998865 8999999999876
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-80 Score=681.78 Aligned_cols=475 Identities=42% Similarity=0.626 Sum_probs=441.6
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCccc
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 213 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 213 (634)
.+||||||||||++|++.+|.|+++.++.|.+.+||+|+| .+++++||.+|......+| ++++++|++||+++.
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~-~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~---- 76 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK---- 76 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEE-SSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC----
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEE-CCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE----
Confidence 4799999999999999999999999999999999999999 4567999999999988899 999999999998532
Q ss_pred CCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceee
Q psy8852 214 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 293 (634)
Q Consensus 214 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~ 293 (634)
+.+++..++|+++.+++|++|+..++.+++.++..+|||||++|++.||+++++|++.||++++.
T Consensus 77 ---------------~~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~AGl~~~~ 141 (509)
T 2v7y_A 77 ---------------VEIEGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVER 141 (509)
T ss_dssp ---------------EEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ---------------EEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 11234578999999999999999999999999999999999999999999999999999999999
Q ss_pred eecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc---
Q psy8852 294 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK--- 370 (634)
Q Consensus 294 li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~--- 370 (634)
+++||+|||++|+.... .+.+++|||+||||||++++++.++.++++++.++..+||.+||+.|++|+.++|+.+.
T Consensus 142 li~Ep~AAAlay~~~~~-~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~ 220 (509)
T 2v7y_A 142 IINEPTAAALAYGLDKE-EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGID 220 (509)
T ss_dssp EEEHHHHHHHHTTGGGS-CSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred EecCHHHHHHHHhhccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999998765 77899999999999999999999999999999999999999999999999999986543
Q ss_pred --CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEe-c---CC-ceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q psy8852 371 --LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-S---DK-KIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTI 443 (634)
Q Consensus 371 --~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~-~---~g-~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~ 443 (634)
.+++.+.+|+.+||++|+.||......+.++. . +| .++.++|+|++|+++++|+++++...++++|+.+++..
T Consensus 221 ~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~ 300 (509)
T 2v7y_A 221 LSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTP 300 (509)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHHHTCCG
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 46788999999999999999999888888763 2 23 45778999999999999999999999999999999988
Q ss_pred CCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcCCCCCCCceeEeeeccccceEEEeccee
Q psy8852 444 KDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLV 523 (634)
Q Consensus 444 ~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 523 (634)
.+|+.|+|+||+|++|+|++.|++.||.++..+.||++|||+|||++|+.+++.. +++.+.|++|++||+++.++.+
T Consensus 301 ~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~~---~~~~~~dv~p~slgi~~~~~~~ 377 (509)
T 2v7y_A 301 ADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEV---KDVVLLDVTPLSLGIETMGGVF 377 (509)
T ss_dssp GGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTCC---CCCCCCCBCSSEEEEEETTTEE
T ss_pred hHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCCc---cCceEEEeeccccceeecCCce
Confidence 8999999999999999999999999998888899999999999999999988753 4788999999999999999999
Q ss_pred eEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccEEEEEEEECCCeeEEEEE
Q psy8852 524 EKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFA 603 (634)
Q Consensus 524 ~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~~d~~g~l~v~~ 603 (634)
.+||+||+++|++++..|++..|+|+.+.|.+|+|++....+|..||++.|.++|+.|.|.++|+|+|++|.+|+|+|++
T Consensus 378 ~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a 457 (509)
T 2v7y_A 378 TKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRA 457 (509)
T ss_dssp EEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 604 YEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 604 ~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
.++.+|++.+++|+++.+||++||++|+++
T Consensus 458 ~~~~~g~~~~~~i~~~~~l~~~~i~~~~~~ 487 (509)
T 2v7y_A 458 KDLGTNKEQSITIKSSSGLSEEEIQRMIKE 487 (509)
T ss_dssp EETTTCCEEEEEECSSCSCCSHHHHHHHHH
T ss_pred EEcCCCcEEEEEEEecCCCCHHHHHHHHHH
Confidence 999999999999999999999999999886
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-60 Score=506.16 Aligned_cols=368 Identities=26% Similarity=0.389 Sum_probs=329.5
Q ss_pred cCCCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCC
Q psy8852 129 VKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDL 208 (634)
Q Consensus 129 ~p~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~ 208 (634)
.|.++.+||||||||||++|++.+|.++++.++.|.+.+||+|+|.+ +.++||..|......+|.++++++|+++|+.+
T Consensus 9 ~~m~~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~-~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~ 87 (409)
T 4gni_A 9 APGERVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVD-GDEYYGQQAKNFLVRNPKNTVAYFRDILGQDF 87 (409)
T ss_dssp ----CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEET-TEEEEHHHHHHHHHHCGGGEEESCGGGTTCCG
T ss_pred CCCCCcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECC-CcEEEcHHHHHhhHhChHhhHHHHHHHhCCCc
Confidence 34567899999999999999999999999999999999999999975 56999999999999999999999999999998
Q ss_pred CCcccC--CCCeEEecCCCceEEEecC--------cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHH
Q psy8852 209 KNINTN--SFPYDFQNKFGMLHIKTIS--------GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQ 278 (634)
Q Consensus 209 ~~~~~~--~~~~~i~~~~~~~~~~~~~--------~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~ 278 (634)
++.... ..++.+...+|.+.+.+.. ..++|+++++++|++|++.++.+++.++..+|||||++|++.||+
T Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~ 167 (409)
T 4gni_A 88 KSVDPTHNHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKA 167 (409)
T ss_dssp GGCCCGGGTTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHH
T ss_pred cchhhhhhccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHH
Confidence 764332 4455555667888887543 389999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeeecchhHHHHHhhhcc--CccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHH
Q psy8852 279 FTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK--NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDY 356 (634)
Q Consensus 279 ~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~--~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~ 356 (634)
+|++|++.||++++.+++||+|||++|+... ...+..++|||+||||||++++++.++.++++++.++..+||.+||+
T Consensus 168 ~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~ 247 (409)
T 4gni_A 168 ALIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDK 247 (409)
T ss_dssp HHHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHH
Confidence 9999999999999999999999999998875 23778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc-------CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHH
Q psy8852 357 CLFSWIVKNAFLKK-------LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRT 428 (634)
Q Consensus 357 ~l~~~l~~~~~~~~-------~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~ 428 (634)
.|++++.+++.... .+++.+.+|+.+||++|+.||......+.++ +.+|.++.+.|||++|+++++|+++++
T Consensus 248 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i 327 (409)
T 4gni_A 248 VLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGF 327 (409)
T ss_dssp HHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHH
Confidence 99999999987432 4678899999999999999999999888887 467889999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCC--c------CCCCChhhHHHHHHHHHHhHhcCC
Q psy8852 429 ILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT--L------LTSIDPDKAVVFGAAIQANFLSGN 497 (634)
Q Consensus 429 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~--~------~~~~~p~~ava~GAa~~a~~~~~~ 497 (634)
..+|+++|+.+++...+|+.|+|+||+|++|+|++.|++.||.+ + ....||++|||+|||++|+....+
T Consensus 328 ~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~~ 404 (409)
T 4gni_A 328 NRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQEH 404 (409)
T ss_dssp HHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999889999999999999999999999999875 3 567999999999999999876543
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-59 Score=502.74 Aligned_cols=365 Identities=38% Similarity=0.574 Sum_probs=334.0
Q ss_pred CCceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC
Q psy8852 131 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 210 (634)
Q Consensus 131 ~~~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~ 210 (634)
+...+||||||||||++|++.+|.++++.++.|++.+||+|+|.++ .++||..|......+|.++++++|+++|+..++
T Consensus 21 ~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~ 99 (404)
T 3i33_A 21 QSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFED 99 (404)
T ss_dssp --CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHHTTTTCSTTEECCGGGTTTCCTTS
T ss_pred ccCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC-CEEecHHHHHhhHhChhhhHHHHHHHhCCCCCc
Confidence 4456899999999999999999999999999999999999999765 699999999999999999999999999999877
Q ss_pred c--ccC--CCCeEEecCCCceEEEe--cC--cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q psy8852 211 I--NTN--SFPYDFQNKFGMLHIKT--IS--GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN 282 (634)
Q Consensus 211 ~--~~~--~~~~~i~~~~~~~~~~~--~~--~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 282 (634)
. +.. .+||.+...+|.+.+.+ .+ ..++|+++++++|++|++.++.+++.++..+|||||++|++.||+++++
T Consensus 100 ~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~ 179 (404)
T 3i33_A 100 ATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKD 179 (404)
T ss_dssp HHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHH
Confidence 3 222 68999887777766654 33 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeecchhHHHHHhhhccCc---cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHH
Q psy8852 283 AAKLAGLNVLRLLNEPTSAAIAYKLDKNI---FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 359 (634)
Q Consensus 283 aa~~aGl~~~~li~Ep~AAa~~y~~~~~~---~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 359 (634)
|++.||++++.+++||+|||++|+..... .+..++|||+||||||++++++.++.+++++..++..+||.+||+.|.
T Consensus 180 a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 259 (404)
T 3i33_A 180 AGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 259 (404)
T ss_dssp HHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHH
T ss_pred HHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999999877652 578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q psy8852 360 SWIVKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSS 433 (634)
Q Consensus 360 ~~l~~~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~ 433 (634)
+++.++++... .+++.+.+|+.+||++|+.||......+.++ +.+|.++.+.|+|++|+++++++++++.+.++
T Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~ 339 (404)
T 3i33_A 260 SHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVE 339 (404)
T ss_dssp HHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99998886543 5788899999999999999999998888887 46888999999999999999999999999999
Q ss_pred HHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc-cCCcCCCCChhhHHHHHHHHHHhHhcC
Q psy8852 434 KALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF-KTTLLTSIDPDKAVVFGAAIQANFLSG 496 (634)
Q Consensus 434 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~ava~GAa~~a~~~~~ 496 (634)
++|+.+++...+|+.|+|+||+|++|+|++.|++.| +.++..+.||++|||.|||++|+.+++
T Consensus 340 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 340 KALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 999999998889999999999999999999999999 678888899999999999999998865
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-58 Score=488.23 Aligned_cols=361 Identities=40% Similarity=0.621 Sum_probs=326.5
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCC--c
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN--I 211 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~--~ 211 (634)
.+||||||||||++|++.+|.++++.++.|.+.+||+|+|.++++++||..|......+|.++++++|++||+.+.+ +
T Consensus 3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 82 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (383)
T ss_dssp CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHHH
Confidence 47899999999999999999999999999999999999998777899999999999999999999999999998765 2
Q ss_pred ccC--CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC
Q psy8852 212 NTN--SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 288 (634)
Q Consensus 212 ~~~--~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aG 288 (634)
+.. .+||.+. ..+|.+.+.+++..++|+++++++|+++++.++.+++.++..+|||||++|++.||+++++|++.||
T Consensus 83 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aG 162 (383)
T 1dkg_D 83 QRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAG 162 (383)
T ss_dssp HHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 222 5789887 7788888888777899999999999999999999999888999999999999999999999999999
Q ss_pred CceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEe----CCeEEEEEEcCCCCccchhHHHHHHHHHHH
Q psy8852 289 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 364 (634)
Q Consensus 289 l~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~----~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 364 (634)
++.+.+++||+|||++|+......+..++|||+||||||+++++.. ++.++++++.++..+||.+||+.|.+++.+
T Consensus 163 l~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 242 (383)
T 1dkg_D 163 LEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242 (383)
T ss_dssp CEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHH
T ss_pred CceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987654356789999999999999999998 678889998898999999999999999999
Q ss_pred HHhhcc-----CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEe-c---CC-ceeEEEEeHHHHHHHHHHHHHHHHHHHHH
Q psy8852 365 NAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-S---DK-KIVNITIDMKQFFTITQHLVNRTILLSSK 434 (634)
Q Consensus 365 ~~~~~~-----~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~-~---~g-~~~~~~itr~~~e~~~~~~~~~~~~~i~~ 434 (634)
++..+. .+++.+.+|+..||++|+.|+......+.++. . +| .++.++|+|++|+++++|+++++.+.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~ 322 (383)
T 1dkg_D 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKV 322 (383)
T ss_dssp HHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 986542 46788899999999999999998887777763 2 23 45678999999999999999999999999
Q ss_pred HHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHh
Q psy8852 435 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 435 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~ 494 (634)
+|+++++...+++.|+|+||+|++|+|++.|++.|+.++..+.||++|||+|||++|+.+
T Consensus 323 ~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l 382 (383)
T 1dkg_D 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVL 382 (383)
T ss_dssp HHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTT
T ss_pred HHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhh
Confidence 999999888899999999999999999999999999988889999999999999999765
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=352.81 Aligned_cols=310 Identities=21% Similarity=0.257 Sum_probs=242.5
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC-Cc-EEecHhHHhhhccCCCchhhhhhhhcCCCCCCc
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GK-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 211 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~ 211 (634)
.+|||||||++|++++..++ .++ .+||+|+|.++ ++ +++|.+|+....++|.++...
T Consensus 4 ~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~------------ 62 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAI------------ 62 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEE------------
T ss_pred ceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEE------------
Confidence 47999999999999875443 333 28999999876 44 579999987766666554210
Q ss_pred ccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q psy8852 212 NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 291 (634)
Q Consensus 212 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~ 291 (634)
.|++ ++.+...+....++.++.+.+..........+|||||++|++.||+++++|++.||++.
T Consensus 63 ----~p~~-------------~g~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aG~~~ 125 (344)
T 1jce_A 63 ----RPMR-------------DGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASK 125 (344)
T ss_dssp ----CCEE-------------TTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCSE
T ss_pred ----ecCC-------------CCeeCChHHHHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCe
Confidence 1111 12233344455555555554433111124789999999999999999999999999999
Q ss_pred eeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccC
Q psy8852 292 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL 371 (634)
Q Consensus 292 ~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~ 371 (634)
+.+++||+|||++|+.... .+..++|||+||||||+++++.... + ..++..+||.+||+.|.+++.++++...
T Consensus 126 ~~li~ep~Aaa~~~~~~~~-~~~~~lVvDiGggttdvsv~~~~~~----~-~~~~~~lGG~~id~~l~~~l~~~~~~~~- 198 (344)
T 1jce_A 126 VFLIEEPMAAAIGSNLNVE-EPSGNMVVDIGGGTTEVAVISLGSI----V-TWESIRIAGDEMDEAIVQYVRETYRVAI- 198 (344)
T ss_dssp EEEEEHHHHHHHHTTCCTT-SSSCEEEEEECSSCEEEEEEETTEE----E-EEEEESCSHHHHHHHHHHHHHHHHCEEC-
T ss_pred EeccCCHHHHHHhcCCCCC-CCceEEEEEeCCCeEEEEEEEcCCE----E-eeCCCCccChhHHHHHHHHHHHHhCccc-
Confidence 9999999999999987654 5678999999999999999887532 2 2456899999999999999998876443
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcc------eEEEEE---ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy8852 372 SYKDVNILMIKSREIKELLSYQSS------VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT 442 (634)
Q Consensus 372 ~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~---~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~ 442 (634)
+ ...||++|+.|+.... ..+.++ +.+|.+..++|+|++|+++++|.++++.+.|+++|+.++..
T Consensus 199 ~-------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~ 271 (344)
T 1jce_A 199 G-------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPE 271 (344)
T ss_dssp C-------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHH
T ss_pred C-------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 1 4679999999987643 345554 24677789999999999999999999999999999987532
Q ss_pred --cCCC-CeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhc
Q psy8852 443 --IKDI-NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 443 --~~~i-~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~ 495 (634)
...+ +.|+|+||+|++|++++.|++.|+.++....||+++||.||++++..++
T Consensus 272 ~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 272 LVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred hccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChH
Confidence 1224 6899999999999999999999998888889999999999999987544
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=257.54 Aligned_cols=229 Identities=19% Similarity=0.152 Sum_probs=172.1
Q ss_pred cccCHHhHHHHHHHHHHHHHHHHhCCCcCcEE--EEeCCCCCHHHHHHHHHHHHHc--------C------Cceeeeecc
Q psy8852 234 GIKSPIEISAQIFITLKKIAENAVNNRIFGAV--ITVPAYFNDIQRQFTKNAAKLA--------G------LNVLRLLNE 297 (634)
Q Consensus 234 ~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~v--iTVPa~~~~~qr~~l~~aa~~a--------G------l~~~~li~E 297 (634)
+.+.++....+++..|++.++...+.+ .++| ++||++|+..||+++++++..+ | ++.+.+++|
T Consensus 93 ~~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~E 171 (346)
T 2fsj_A 93 GRLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQ 171 (346)
T ss_dssp TCTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEET
T ss_pred CcccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEcc
Confidence 355556666666666665542222233 5699 9999999999999999998776 4 356889999
Q ss_pred hhHHHHHhhhcc--CccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHH
Q psy8852 298 PTSAAIAYKLDK--NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKD 375 (634)
Q Consensus 298 p~AAa~~y~~~~--~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~ 375 (634)
|.|||++|.... ....++++|+|+||||||++++++.++. .+...+++..+||.++++.|.+++.++++... +..
T Consensus 172 p~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~g~~~-~i~- 248 (346)
T 2fsj_A 172 GVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIGVGDAISALSRKIAKETGFVV-PFD- 248 (346)
T ss_dssp THHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCCHHHHHHHHHHHHHHHHCCCC-CHH-
T ss_pred HHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchhHHHHHHHHHHHHHHHhCCCc-CCC-
Confidence 999999883221 1134789999999999999999987776 45555677899999999999999999887520 101
Q ss_pred HHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcC
Q psy8852 376 VNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQF-FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGG 454 (634)
Q Consensus 376 ~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~-e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG 454 (634)
...+| . ...+.+ .|. .++++++ +++++++++++.+.+++.|+++ .+.++.|+|+||
T Consensus 249 ----~~~~e-------~--~~~~~~---~g~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~~i~~IvL~GG 305 (346)
T 2fsj_A 249 ----LAQEA-------L--SHPVMF---RQK----QVGGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGG 305 (346)
T ss_dssp ----HHHHH-------T--TSCEEE---TTE----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEEST
T ss_pred ----HHHHh-------c--CCeEeE---CCc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccEEEEECC
Confidence 11122 1 112222 343 3558999 9999999999999999999876 356899999999
Q ss_pred CcCcHHHHHHHHhhccCCcCC---CCChhhHHHHHHHHHHh
Q psy8852 455 STRMKHIHEGVSNFFKTTLLT---SIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 455 ~s~~p~v~~~l~~~f~~~~~~---~~~p~~ava~GAa~~a~ 492 (634)
+|++ +++.+++.|+.. .. ..||++|+|.|+..++.
T Consensus 306 ga~l--l~~~l~~~~~~~-~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 306 GSNL--IGDRFEEIAPGT-LVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp THHH--HGGGGGGGSTTC-BCCCCTTTTTTHHHHHHHHHHH
T ss_pred cHHH--HHHHHHHHCcCc-EEeccCCCcHHHHHHHHHHHHh
Confidence 9998 999999999743 34 67999999999998764
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=233.14 Aligned_cols=207 Identities=21% Similarity=0.311 Sum_probs=176.6
Q ss_pred ccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccce
Q psy8852 235 IKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 314 (634)
Q Consensus 235 ~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~ 314 (634)
.+...+.+..+|+++++.+....+.....+++|+|+.|...+|+.++.+++.+|++...++.||+|++++++...
T Consensus 66 ~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~----- 140 (272)
T 3h1q_A 66 LVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIND----- 140 (272)
T ss_dssp BCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCSS-----
T ss_pred EEEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCCC-----
Confidence 344456778899999999988888888899999999999999999999999999999999999999999887542
Q ss_pred EEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCc
Q psy8852 315 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQS 394 (634)
Q Consensus 315 ~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 394 (634)
.+|+|+|||||+++++. ++.. + ......+||.+||+.+.+++.- -...++++|+.++
T Consensus 141 -~~viDiGggst~~~~~~--~g~~--~-~~~~~~~Gg~~~~~~l~~~l~~--------------~~~~ae~~k~~~~--- 197 (272)
T 3h1q_A 141 -GIVVDIGGGTTGIAVIE--KGKI--T-ATFDEPTGGTHLSLVLAGSYKI--------------PFEEAETIKKDFS--- 197 (272)
T ss_dssp -EEEEEECSSCEEEEEEE--TTEE--E-EECCBSCCHHHHHHHHHHHHTC--------------CHHHHHHHHHSST---
T ss_pred -EEEEEECCCcEEEEEEE--CCEE--E-EEecCCCcHHHHHHHHHHHhCC--------------CHHHHHHHHHhcC---
Confidence 49999999999999886 3432 2 3466899999999999876641 1367888998876
Q ss_pred ceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcC
Q psy8852 395 SVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 474 (634)
Q Consensus 395 ~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~ 474 (634)
+++++++++.+.++++...+.+.++..+ +++.|+|+||++++|++++.+++.|+.++.
T Consensus 198 ------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l~~~v~ 255 (272)
T 3h1q_A 198 ------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFLGKEVQ 255 (272)
T ss_dssp ------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHHSSCCB
T ss_pred ------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHhCCCcc
Confidence 6899999999999999999999998764 477999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHH
Q psy8852 475 TSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 475 ~~~~p~~ava~GAa~~a 491 (634)
.+.+|++++|.|||++|
T Consensus 256 ~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 256 VPIHPLLVTPLGIALFG 272 (272)
T ss_dssp CCSSGGGHHHHHHHTTC
T ss_pred ccCChHHHHHHHHHhcC
Confidence 89999999999999864
|
| >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-27 Score=217.50 Aligned_cols=110 Identities=34% Similarity=0.608 Sum_probs=103.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
+|||++||||+++.++..+||++||+|+++|||||+++.++.++..+.++|+.||+||++|+||.+|+.|++.+.|..+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~ 80 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLA 80 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCcc
Confidence 48999999999998899999999999999999999999988888899999999999999999999999999999999998
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhcch
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNKKD 111 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~ 111 (634)
.+.++.+|++|||++|+|+|+|+++.+..+
T Consensus 81 ~e~~~~~d~~fLme~me~rE~lee~~~~~d 110 (171)
T 1fpo_A 81 SEQHTVRDTAFLMEQLELREELDEIEQAKD 110 (171)
T ss_dssp CSSSCCSCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhhccCC
Confidence 877888999999999999999999876443
|
| >3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-27 Score=223.38 Aligned_cols=108 Identities=32% Similarity=0.599 Sum_probs=102.2
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCCCc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLN 81 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~~~ 81 (634)
.|||++|||+++|++|.++||++||+|+++|||||+++.++.++..+.++|++||+||++|+||.+|+.|++.+.|..+.
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~ 122 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIP 122 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCCCcc
Confidence 58999999999999999999999999999999999998888888999999999999999999999999999999999998
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHhhc
Q psy8852 82 TKLNLNFSHDFLEQQMKWRETLSIIKNK 109 (634)
Q Consensus 82 ~~~~~~~~~~~l~~~~e~~e~~~~~~~~ 109 (634)
++.++.+|++|||++|+|+|+|+++.+.
T Consensus 123 ~e~~~~~d~~fLme~me~~E~le~~~~~ 150 (207)
T 3bvo_A 123 ERTDYEMDRQFLIEIMEINEKLAEAESE 150 (207)
T ss_dssp SSCSSSSCHHHHHHHHHHHHHHHHCCSH
T ss_pred cccccCCCHHHHHHHHHHHHHHHHccCH
Confidence 8878899999999999999999998654
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-27 Score=248.63 Aligned_cols=315 Identities=15% Similarity=0.123 Sum_probs=205.1
Q ss_pred ceEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
+.++|||+||++++++++.+|.+.+. ..|...+||... .+| ...++..+...+|+++++....
T Consensus 13 ~~~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~~--~~g-----------~i~d~~~~~~~ik~~~~~~~~~-- 75 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGLL--MEG-----------MVAEPAALAQEIKELLLEARTR-- 75 (377)
T ss_dssp CCCEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTSE--ETT-----------EESCHHHHHHHHHHHHHHHTCC--
T ss_pred CceEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCcc--cCC-----------CcCCHHHHHHHHHHHHHHcCCC--
Confidence 45799999999999998877665542 223334454321 122 2235667788888888752111
Q ss_pred cCCCCeEEecCCCceEE-EecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCC------------------
Q psy8852 213 TNSFPYDFQNKFGMLHI-KTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFN------------------ 273 (634)
Q Consensus 213 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~------------------ 273 (634)
.. ..-+.-....+.. ......++++++-.. ++..++++++.++.+++|++|..=.
T Consensus 76 ~~--~v~~~i~~~~~~~~~~~~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~v~~va~~ 149 (377)
T 2ych_A 76 KR--YVVTALSNLAVILRPIQVPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAAR 149 (377)
T ss_dssp CC--EEEEEECGGGCEEEEEEEECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEESSCGGGSCTTSEEEEEEEEEE
T ss_pred cc--eEEEEecCCcEEEEEEECCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEEeCCCCCCCCcceeEEEEEEec
Confidence 10 0001111111111 111135777776543 3446777888899999999873111
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccC-ccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccch
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN-IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGD 352 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~-~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 352 (634)
....+.+++|++.||++...++.||.|||++|+.... ..+..++|+|+||||||+++++. +.. . ..++..+||.
T Consensus 150 ~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~--g~~--~-~~~~~~~GG~ 224 (377)
T 2ych_A 150 QEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRG--DKP--L-AVRVLTLSGK 224 (377)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEET--TEE--E-EEEEESCSHH
T ss_pred HHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEEC--CEE--E-EEEeeechHH
Confidence 1123889999999999999999999999999865332 24677999999999999999873 332 1 2456899999
Q ss_pred hHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEE----EEEecCCceeEEEEeHHHHHHHHHHHHHHH
Q psy8852 353 DFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL----NVKLSDKKIVNITIDMKQFFTITQHLVNRT 428 (634)
Q Consensus 353 ~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i----~i~~~~g~~~~~~itr~~~e~~~~~~~~~~ 428 (634)
+||+.|.+. ++.. +..||++|+.++....... .+++ ......+++++|++++++.++++
T Consensus 225 ~i~~~i~~~----~~~~----------~~~aE~~K~~~~~~~~~~~~~~~~i~~---~~~~~~i~~~~~~~~i~~~~~~i 287 (377)
T 2ych_A 225 DFTEAIARS----FNLD----------LLAAEEVKRTYGMATLPTEDEELLLDF---DAERERYSPGRIYDAIRPVLVEL 287 (377)
T ss_dssp HHHHHHHHH----TTCC----------HHHHHHHHHHTC----------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hCCC----------HHHHHHHHhhccccccccccccccccc---ccccccCCHHHHHHHHHHHHHHH
Confidence 999999862 2221 4689999999876433211 1221 12445789999999999999999
Q ss_pred HHHHHHHHHHc--CCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCC--------------------CChhhHHHHH
Q psy8852 429 ILLSSKALMDA--NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTS--------------------IDPDKAVVFG 486 (634)
Q Consensus 429 ~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~--------------------~~p~~ava~G 486 (634)
...|++.|+.. +.....++.|+|+||+|++|.+++.+++.|+.++... .+|..++|.|
T Consensus 288 ~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~P~~~v~~~~~~~~~~~l~~~~p~~a~a~G 367 (377)
T 2ych_A 288 TQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALG 367 (377)
T ss_dssp HHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECCGGGGSBCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecCchhhcccCcccCCHHHHHhhhHHHHHHHH
Confidence 99999999853 4555679999999999999999999999998654321 2456778999
Q ss_pred HHHHHh
Q psy8852 487 AAIQAN 492 (634)
Q Consensus 487 Aa~~a~ 492 (634)
+|+++.
T Consensus 368 lal~~~ 373 (377)
T 2ych_A 368 LALRGV 373 (377)
T ss_dssp HHHHHT
T ss_pred HHHcCC
Confidence 998864
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=237.09 Aligned_cols=199 Identities=17% Similarity=0.082 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchh
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 353 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 353 (634)
....+.+.+|++.||+++..++.||.|||++|..... .+..++|+|+||||||+++++ ++.+. ..++.++||++
T Consensus 167 ~~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~-~~~gv~vvDiGggttdisi~~--~g~~~---~~~~i~~GG~~ 240 (419)
T 4a2a_A 167 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPE-KDRGVVVVNLGYNFTGLIAYK--NGVPI---KISYVPVGMKH 240 (419)
T ss_dssp HHHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHH-HHHCEEEEEECSSSEEEEEEE--TTEEE---EEEEESCCHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhcccc-ccCCEEEEEECCCcEEEEEEE--CCEEE---EEEecccHHHH
Confidence 4566889999999999999999999999998865443 556799999999999999987 44432 23458999999
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC-----cceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHH
Q psy8852 354 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ-----SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRT 428 (634)
Q Consensus 354 id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~ 428 (634)
||+.|...+. .....||++|+.++.. ....+.++..+| .....++|++|.++++|.++++
T Consensus 241 it~dIa~~l~--------------~~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~-~~~~~is~~~l~~ii~p~veei 305 (419)
T 4a2a_A 241 VIKDVSAVLD--------------TSFEESERLIITHGNAVYNDLKEEEIQYRGLDG-NTIKTTTAKKLSVIIHARLREI 305 (419)
T ss_dssp HHHHHHHHHT--------------CCHHHHHHHHHHHCCSCCTTCCCCEEEEECTTS-CSEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--------------CCHHHHHHHHHHhccCcccCCCCceEEEeecCC-ccceEEcHHHHHHHHHHHHHHH
Confidence 9999986432 2347899999998753 345677765443 4678999999999999999999
Q ss_pred HHHHHHHHHHcCC------CcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcC--C-----C----------CChhhHHHH
Q psy8852 429 ILLSSKALMDANL------TIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL--T-----S----------IDPDKAVVF 485 (634)
Q Consensus 429 ~~~i~~~l~~~~~------~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~--~-----~----------~~p~~ava~ 485 (634)
.+.+++.|+.++. ....++.|+|+||+|++|.+++.+++.||.++. . + .+|..++|.
T Consensus 306 ~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~ 385 (419)
T 4a2a_A 306 MSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAF 385 (419)
T ss_dssp HHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCGGGSSSCCCBTCHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEecCCCCchhccCcccccCCchHHHHH
Confidence 9999999999987 345689999999999999999999999987653 2 1 489999999
Q ss_pred HHHHHHhH
Q psy8852 486 GAAIQANF 493 (634)
Q Consensus 486 GAa~~a~~ 493 (634)
|.++++..
T Consensus 386 Gl~~~~~~ 393 (419)
T 4a2a_A 386 GNVFAVSE 393 (419)
T ss_dssp HTTCC---
T ss_pred HHHHHHhh
Confidence 99998764
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-26 Score=203.74 Aligned_cols=129 Identities=42% Similarity=0.686 Sum_probs=123.7
Q ss_pred EeeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCcc
Q psy8852 506 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 585 (634)
Q Consensus 506 ~~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~ 585 (634)
+.|++|+++||++.+|.|.+|||||+++|++++..|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 586 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 586 ~i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
+|+|+|.+|.+|+|+|++.++.+|++.+++|.++.+||++||++|++++
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~~~a 130 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEA 130 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHHHHH
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998899999999999874
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=202.53 Aligned_cols=129 Identities=40% Similarity=0.666 Sum_probs=120.7
Q ss_pred EeeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCcc
Q psy8852 506 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 585 (634)
Q Consensus 506 ~~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~ 585 (634)
+.|++|+++||++.+|.|.+||+||+++|++++..|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCCeeEEEEEEEecCCeEEEEEEecCCC-CCHHHHHHhhhcC
Q psy8852 586 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN-MNLDEIKSNLKDK 634 (634)
Q Consensus 586 ~i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~~~-~~~~ei~~~~~~~ 634 (634)
+|+|+|.+|.+|+|+|++.++.||++.+++|.++.+ ||++||++|++++
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a 131 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEA 131 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999988765 9999999999874
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-26 Score=241.34 Aligned_cols=304 Identities=17% Similarity=0.207 Sum_probs=207.6
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC-----------------cEEecHhHHhhhccCCCch
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG-----------------KIYVGKKAKITQNIDPKNT 196 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~-----------------~~~~G~~A~~~~~~~~~~~ 196 (634)
..||||+||+++++++..++.|.++ +||+|+...+. ..++|.+|... +.
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~~--------~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~----~~-- 71 (418)
T 1k8k_A 6 PACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK----PT-- 71 (418)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-----------CCCTTGGGCEEEGGGGTSC----TT--
T ss_pred CeEEEECCCCeEEEeeCCCCCCCCc--------CCceEEEECcccccccccccccccccccCeEEChHHHhc----CC--
Confidence 3589999999999998765555433 67888765331 25666666432 10
Q ss_pred hhhhhhhcCCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCC--CcCcEEEEeCCCCCH
Q psy8852 197 ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNN--RIFGAVITVPAYFND 274 (634)
Q Consensus 197 i~~~k~~lg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~--~~~~~viTVPa~~~~ 274 (634)
..++ .| ..++.+.-.+.+..+++++.. +.++. ....++||+|++|+.
T Consensus 72 -~~~~--------------~p-------------i~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~ 120 (418)
T 1k8k_A 72 -YATK--------------WP-------------IRHGIVEDWDLMERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTP 120 (418)
T ss_dssp -SEEE--------------CC-------------EETTEESCHHHHHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCH
T ss_pred -CEEe--------------cc-------------ccCCEECCHHHHHHHHHHHHH---hccCCCCCCCcEEEEeCCCCCH
Confidence 0011 11 122344445566666666653 22332 245799999999999
Q ss_pred HHHHHHHHHH-HHcCCceeeeecchhHHHHH-hhh---ccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCc
Q psy8852 275 IQRQFTKNAA-KLAGLNVLRLLNEPTSAAIA-YKL---DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNL 349 (634)
Q Consensus 275 ~qr~~l~~aa-~~aGl~~~~li~Ep~AAa~~-y~~---~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 349 (634)
.+|++|.+++ +.+|++.+.+++||+||+++ |.. ... .. +.+|+|+|+||||++++. ++.. +....+..++
T Consensus 121 ~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~-~~-~glVvDiG~gtt~v~~v~--~G~~-~~~~~~~~~l 195 (418)
T 1k8k_A 121 ENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER-TL-TGTVIDSGDGVTHVIPVA--EGYV-IGSCIKHIPI 195 (418)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSC-CC-CEEEEEESSSCEEEEEEE--TTEE-CGGGCEEESC
T ss_pred HHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCC-CC-eEEEEEcCCCceEEEEeE--CCEE-cccceEEEeC
Confidence 9999999999 88999999999999999987 421 111 22 569999999999999885 3432 2222356789
Q ss_pred cchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcc-----------------eEEEEEe-cCCceeEEE
Q psy8852 350 GGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSS-----------------VKLNVKL-SDKKIVNIT 411 (634)
Q Consensus 350 GG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----------------~~i~i~~-~~g~~~~~~ 411 (634)
||+++|+.|.+++.+++..- +.. .-...+|++|+.++.... ..+.++. ..+....++
T Consensus 196 GG~~lt~~l~~~l~~~~~~~--~~~---~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~ 270 (418)
T 1k8k_A 196 AGRDITYFIQQLLRDREVGI--PPE---QSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSID 270 (418)
T ss_dssp SHHHHHHHHHHHHHTTCCCC--CGG---GHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCC--CCH---HHHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCCCCCCcccEEE
Confidence 99999999999998764311 100 112567888888764321 2344432 234566889
Q ss_pred EeHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhccC---------
Q psy8852 412 IDMKQF---FTITQHL------VNRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT--------- 471 (634)
Q Consensus 412 itr~~~---e~~~~~~------~~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--------- 471 (634)
++++.| |.++.|. +..+.++|.++|..+..+ ...++.|+|+||+|++|.++++|++.++.
T Consensus 271 l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~ 350 (418)
T 1k8k_A 271 VGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLS 350 (418)
T ss_dssp ECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccc
Confidence 999998 4554443 256888899999887533 34468899999999999999999876532
Q ss_pred ---------------CcCCCCChhhHHHHHHHHHHh
Q psy8852 472 ---------------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 472 ---------------~~~~~~~p~~ava~GAa~~a~ 492 (634)
++..+.+|..++.+||+++|.
T Consensus 351 ~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 351 EELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp HHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred cccccccCCCCceeEEEeCCCccccceeHhHHHHHc
Confidence 123356788999999999986
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=201.07 Aligned_cols=129 Identities=41% Similarity=0.613 Sum_probs=123.6
Q ss_pred EeeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCcc
Q psy8852 506 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 585 (634)
Q Consensus 506 ~~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~ 585 (634)
+.|++|+++||++.+|.|.+||+||+++|++++..|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+.|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCCeeEEEEEEEecCCeEEEEEEecC-CCCCHHHHHHhhhcC
Q psy8852 586 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKSNLKDK 634 (634)
Q Consensus 586 ~i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~-~~~~~~ei~~~~~~~ 634 (634)
+|+|+|.+|.+|+|+|++.++.+|++.+++|.+. .+||++||++|++++
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a 131 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEA 131 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHH
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999887 679999999999874
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=236.24 Aligned_cols=299 Identities=18% Similarity=0.203 Sum_probs=202.2
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC---------CcEEecHhHHhhhccCCCchhhhhhhhc
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD---------GKIYVGKKAKITQNIDPKNTISSIKRFI 204 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~k~~l 204 (634)
..|+||+||+++++++..++.|.++ +||+++.... ...++|.+|..... . ..++
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~----~--~~~~--- 68 (375)
T 2fxu_A 6 TALVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG----I--LTLK--- 68 (375)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHTT----S--EEEE---
T ss_pred ceEEEECCCCeEEEEECCCCCCcee--------eccccccccccccccCCCCCCeEechhHhhcCc----c--ccee---
Confidence 3589999999999999776665433 5666665432 23678988865310 0 0011
Q ss_pred CCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCC--cCcEEEEeCCCCCHHHHHHHHH
Q psy8852 205 ARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNR--IFGAVITVPAYFNDIQRQFTKN 282 (634)
Q Consensus 205 g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~--~~~~viTVPa~~~~~qr~~l~~ 282 (634)
.| ..++.+.-.+.+..+++++.. +.++.. ...+++|+|++++..+|+++.+
T Consensus 69 -----------~P-------------i~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~e 121 (375)
T 2fxu_A 69 -----------YP-------------IEHGIITNWDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQ 121 (375)
T ss_dssp -----------CS-------------EETTEECCHHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHH
T ss_pred -----------cc-------------ccCCcccCHHHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHHHHHHH
Confidence 11 123344555667777777763 223332 3469999999999999998887
Q ss_pred H-HHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHH
Q psy8852 283 A-AKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361 (634)
Q Consensus 283 a-a~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 361 (634)
+ .+.+|++.+.+++||+|||++++.. +.+|+|+|+||||++.+ .+|. .+....+..++||+++|+.|.++
T Consensus 122 ~~fe~~g~~~~~~~~e~~aaa~a~g~~------~~lVvDiG~gtt~v~~v--~~G~-~~~~~~~~~~~GG~~lt~~l~~~ 192 (375)
T 2fxu_A 122 IMFETFNVPAMYVAIQAVLSLYASGRT------TGIVLDSGDGVTHNVPI--YEGY-ALPHAIMRLDLAGRDLTDYLMKI 192 (375)
T ss_dssp HHHHTTCCSEEEEEEHHHHHHHHTTCS------SEEEEEECSSCEEEEEE--ETTE-ECGGGCEEESCCHHHHHHHHHHH
T ss_pred HHHHhcCcceEEEccchheeeeecCCC------eEEEEEcCCCceEEeEe--ECCE-EeccceEEeccCHHHHHHHHHHH
Confidence 6 5788999999999999999998753 46999999999998765 3453 22222345789999999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCc--------------ceEEEEEecCCceeEEEEeHHHHH---HHHHHH
Q psy8852 362 IVKNAFLKKLSYKDVNILMIKSREIKELLSYQS--------------SVKLNVKLSDKKIVNITIDMKQFF---TITQHL 424 (634)
Q Consensus 362 l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~--------------~~~i~i~~~~g~~~~~~itr~~~e---~~~~~~ 424 (634)
+..+.. ...... -...+|++|+.++... .....+++.+|. .++++++.|. .+++|.
T Consensus 193 l~~~~~-~~~~~~----~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lpdg~--~i~i~~erf~~~E~lf~p~ 265 (375)
T 2fxu_A 193 LTERGY-SFVTTA----EREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQ--VITIGNERFRCPETLFQPS 265 (375)
T ss_dssp HHHHTC-CCCSHH----HHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSC--EEEESTHHHHHHHTTTCGG
T ss_pred HHhcCC-CCCcHH----HHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECCCCC--EEEEChhheechHhhCCCc
Confidence 987621 111000 1234555565553221 112334455554 4677888773 334442
Q ss_pred -----HHHHHHHHHHHHHHcCC--CcCCCCeEEEEcCCcCcHHHHHHHHhhcc--------CCcCCCCChhhHHHHHHHH
Q psy8852 425 -----VNRTILLSSKALMDANL--TIKDINNVILVGGSTRMKHIHEGVSNFFK--------TTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 425 -----~~~~~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~f~--------~~~~~~~~p~~ava~GAa~ 489 (634)
...+.++|.++|.++.. ....++.|+|+||+|++|.++++|++.++ .++..+.+|..++++||++
T Consensus 266 ~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si 345 (375)
T 2fxu_A 266 FIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSI 345 (375)
T ss_dssp GGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHH
Confidence 24577888888886642 22335789999999999999999998875 3344578999999999999
Q ss_pred HHh
Q psy8852 490 QAN 492 (634)
Q Consensus 490 ~a~ 492 (634)
+|.
T Consensus 346 ~a~ 348 (375)
T 2fxu_A 346 LAS 348 (375)
T ss_dssp HHH
T ss_pred hhC
Confidence 987
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=205.57 Aligned_cols=134 Identities=42% Similarity=0.666 Sum_probs=123.6
Q ss_pred CCceeEeeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCC
Q psy8852 501 DDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPM 580 (634)
Q Consensus 501 ~~~~~~~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~ 580 (634)
+..+.+.|++|+++||++.+|.|.+|||||+++|++++..|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEEEECCCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 581 PAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 581 ~~g~~~i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
|+|.++|+|+|.+|.+|+|+|++.++++|++.+++|.++.+||++||++|++++
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~mi~~a 150 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNA 150 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHHHHHHH
T ss_pred CCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988899999999999874
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=212.30 Aligned_cols=130 Identities=48% Similarity=0.726 Sum_probs=126.0
Q ss_pred eEeeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCc
Q psy8852 505 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGR 584 (634)
Q Consensus 505 ~~~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~ 584 (634)
++.|++|+++||++.+|.|.+|||||++||++++..|++..|+|+.+.|.||||++....+|..||+|.|.++|++|+|.
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~ 81 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEECCCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhcC
Q psy8852 585 ARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKDK 634 (634)
Q Consensus 585 ~~i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~~ 634 (634)
++|+|+|.+|.||+|+|++.+++||++.+++|+++.+||++||++|++++
T Consensus 82 ~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m~~~a 131 (219)
T 4e81_A 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDA 131 (219)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999864
|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-25 Score=202.93 Aligned_cols=103 Identities=32% Similarity=0.500 Sum_probs=91.0
Q ss_pred CCCCccccC------CCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 1 MKNYFDFFN------LPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 1 ~~~~~~~l~------~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
|+|||++|| +|+ ++++.++||++||+|+++|||||+++ +.++|++||+||++|+||.+|+.|++.
T Consensus 10 ~~d~y~ll~~~~p~~~~~-~~a~~~eIk~aYr~la~~~HPDk~~~--------a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPI-WTIDQSRLRKEYRQLQAQHHPDMAQQ--------GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp SCCTGGGCTTTCTTCSCC-SCCCHHHHHHHHHHHHHTCCTTSCCS--------CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCC-CCCCHHHHHHHHHHHHHHhCcCCCcc--------HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 679999995 555 88999999999999999999999875 346788999999999999999999999
Q ss_pred h-cCCCCcccc----ccCCCHHHHHHHHHHHHHHHHHhhcchh
Q psy8852 75 L-NGIDLNTKL----NLNFSHDFLEQQMKWRETLSIIKNKKDK 112 (634)
Q Consensus 75 l-~~~~~~~~~----~~~~~~~~l~~~~e~~e~~~~~~~~~~~ 112 (634)
| +|.++.++. ++..|++|||++|||+|+|+++++..+.
T Consensus 81 l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~~~~~l 123 (181)
T 3uo3_A 81 LLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGV 123 (181)
T ss_dssp HHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHhCCCccccccccccccCCHHHHHHHHHHHHHHHhccCHHHH
Confidence 9 999988765 5778999999999999999998754443
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=189.19 Aligned_cols=128 Identities=39% Similarity=0.646 Sum_probs=122.2
Q ss_pred EeeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCcc
Q psy8852 506 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 585 (634)
Q Consensus 506 ~~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~ 585 (634)
+.|++|++|||++.+|.|.+||+||++||++++..|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCCeeEEEEEEEecCCeEEEEEEecC-CCCCHHHHHHhhhc
Q psy8852 586 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKSNLKD 633 (634)
Q Consensus 586 ~i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~-~~~~~~ei~~~~~~ 633 (634)
+|+|+|++|.+|+|+|++.++.+|++..++|..+ .+||++||++|+++
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~ 130 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMIND 130 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHH
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999887 46999999999886
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=215.43 Aligned_cols=226 Identities=16% Similarity=0.147 Sum_probs=150.1
Q ss_pred ccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCC-CCHH--HH--HHHHHH------------HHHcCCceeeeecc
Q psy8852 235 IKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAY-FNDI--QR--QFTKNA------------AKLAGLNVLRLLNE 297 (634)
Q Consensus 235 ~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~-~~~~--qr--~~l~~a------------a~~aGl~~~~li~E 297 (634)
.+++..+++.+ ..|+. +.. .+.+ ..+|+++|.. |... |+ +++.+- ++.+++..+.+++|
T Consensus 73 ~~~~~~l~~i~-~aL~~-~~~-~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e 148 (320)
T 2zgy_A 73 QYSDVNVVAVH-HALLT-SGL-PVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPE 148 (320)
T ss_dssp GGSHHHHHHHH-HHHHH-HSC-CSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEES
T ss_pred cchHHHHHHHH-HHHHH-cCC-CCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecC
Confidence 56666666543 44442 211 1222 3699999987 6431 21 222211 23445678899999
Q ss_pred hhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHH
Q psy8852 298 PTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVN 377 (634)
Q Consensus 298 p~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~ 377 (634)
|.||+++|..... .+..++|+|+||||||+++++ ++...+....++.++||.+||+.|.+++.++ +... +.
T Consensus 149 ~~aa~~~~~~~~~-~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-~~~i-~~---- 219 (320)
T 2zgy_A 149 SIPAGYEVLQELD-ELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLA-RTKG-SS---- 219 (320)
T ss_dssp SHHHHHHHHHHSC-TTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCC-SBGG-GH----
T ss_pred cHHHHHhhhcccc-CCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHHc-CCCC-CH----
Confidence 9999998874433 567899999999999999997 4444456667778999999999999988753 2211 11
Q ss_pred HHHHHHHHH-HHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc
Q psy8852 378 ILMIKSREI-KELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGST 456 (634)
Q Consensus 378 ~L~~~~e~~-K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s 456 (634)
..+|++ |..- .. ...+..+...-+.+++.+++++.++++.+.+.+.+++. .+++.|+|+||+|
T Consensus 220 ---~~ae~~lk~~~---~~------~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~vvl~GGga 283 (320)
T 2zgy_A 220 ---YLADDIIIHRK---DN------NYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYTHVMVIGGGA 283 (320)
T ss_dssp ---HHHHHHHHTTT---CH------HHHHHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCEEEEESTTH
T ss_pred ---HHHHHHHHHhh---hh------hcccceecCchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEEECChH
Confidence 233433 3220 00 00000000001345666777777777777777777652 4689999999999
Q ss_pred CcHHHHHHHHhhccC---CcCCCCChhhHHHHHHHHHH
Q psy8852 457 RMKHIHEGVSNFFKT---TLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 457 ~~p~v~~~l~~~f~~---~~~~~~~p~~ava~GAa~~a 491 (634)
++ +++.|++.|+. ++....||++|+|.||++++
T Consensus 284 ~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 284 EL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 87 99999999987 57778999999999999876
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=192.75 Aligned_cols=127 Identities=61% Similarity=0.938 Sum_probs=122.6
Q ss_pred eeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccE
Q psy8852 507 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRAR 586 (634)
Q Consensus 507 ~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~ 586 (634)
.|++|+++||++.+|.|.+||+||+++|++++..|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+.|.|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCeeEEEEEEEecCCeEEEEEEecCCCCCHHHHHHhhhc
Q psy8852 587 IKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKSNLKD 633 (634)
Q Consensus 587 i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~~~~~~~ei~~~~~~ 633 (634)
|+|+|.+|.+|+|+|++.+..+|++.+++|+++.+||++||++|+++
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~Ls~eei~~~~~~ 127 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKD 127 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSCCCHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEeccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999998889999999999886
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-22 Score=174.87 Aligned_cols=121 Identities=45% Similarity=0.688 Sum_probs=110.7
Q ss_pred CceeEeeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCC
Q psy8852 502 DNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMP 581 (634)
Q Consensus 502 ~~~~~~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~ 581 (634)
.++.+.|++|+++||++.++.|.+||+||++||++++..|++..|+|+.+.|.+|||++....+|..||++.|.++|+.|
T Consensus 15 ~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~p 94 (135)
T 1q5l_A 15 RGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAP 94 (135)
T ss_dssp ------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSCC
T ss_pred CcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEEECCCeeEEEEEEEecCCeEEEEEEecCCCC
Q psy8852 582 AGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNM 622 (634)
Q Consensus 582 ~g~~~i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~~~~ 622 (634)
+|.++|+|+|++|.+|+|+|++.|+.+|++.+++|+++.+|
T Consensus 95 ~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~l 135 (135)
T 1q5l_A 95 RGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL 135 (135)
T ss_dssp SSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSCCC
T ss_pred CceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999999999887553
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-21 Score=202.75 Aligned_cols=298 Identities=18% Similarity=0.193 Sum_probs=92.1
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC-----------CcEEecHhHHhhhccCCCchhhhhhhh
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-----------GKIYVGKKAKITQNIDPKNTISSIKRF 203 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-----------~~~~~G~~A~~~~~~~~~~~i~~~k~~ 203 (634)
.|+||+||.++++++..++.|.++ +||+|+.... ...++|.+|..... ...++
T Consensus 8 ~ivID~Gs~~~k~G~ag~~~P~~~--------~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~------~~~~~-- 71 (394)
T 1k8k_B 8 VVVCDNGTGFVKCGYAGSNFPEHI--------FPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRS------MLEVN-- 71 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEECCCCeEEEeeCCCCCccee--------ccceeEEEcccccccccCCCCCCeEEChHHHhcCC------Cceee--
Confidence 589999999999999876665433 5666655322 23557776643210 00000
Q ss_pred cCCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHH-HHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q psy8852 204 IARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK-KIAENAVNNRIFGAVITVPAYFNDIQRQFTKN 282 (634)
Q Consensus 204 lg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~-~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~ 282 (634)
.|+ .++.+.-.+.+..+++++. ..... ....-..+++|+|+.++..+|+++.+
T Consensus 72 ------------~Pi-------------~~G~i~dwd~~e~i~~~~~~~~~L~-~~~~~~~vllt~p~~~~~~~r~~~~e 125 (394)
T 1k8k_B 72 ------------YPM-------------ENGIVRNWDDMKHLWDYTFGPEKLN-IDTRNCKILLTEPPMNPTKNREKIVE 125 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------ccc-------------cCCEEecHHHHHHHHHHHhcccccC-cCCCCCcEEEEECCCCCHHHHHHHHH
Confidence 111 1233344455566666665 21111 01122469999999999999998888
Q ss_pred H-HHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHH
Q psy8852 283 A-AKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 361 (634)
Q Consensus 283 a-a~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 361 (634)
+ .+.+|++.+.++.||.||+++++.. +.+|+|+|+|||+++.+. +|.. +.......++||+++|+.|.++
T Consensus 126 ~~fe~~~~~~~~~~~~~~~a~~a~g~~------~~lVVDiG~g~T~v~pv~--~G~~-~~~~~~~~~~GG~~lt~~l~~~ 196 (394)
T 1k8k_B 126 VMFETYQFSGVYVAIQAVLTLYAQGLL------TGVVVDSGDGVTHICPVY--EGFS-LPHLTRRLDIAGRDITRYLIKL 196 (394)
T ss_dssp ----------------------------------CCEEEECSSCEEEECEE--TTEE-CSTTCEEESCCHHHHHHHHHHH
T ss_pred HhhhccCCCeEEEEhhHHHHHHhCCCc------eEEEEEcCCCceEeeeeE--CCEE-cccceEEeeccHHHHHHHHHHH
Confidence 5 4778999999999999999998753 459999999999998663 3332 1111234689999999999999
Q ss_pred HHHH-Hhhcc-CCHHHHHHHHHHHHHHHHHhcCCc--------------ceEEEEEecCCceeEEEEeHHHHH---HHHH
Q psy8852 362 IVKN-AFLKK-LSYKDVNILMIKSREIKELLSYQS--------------SVKLNVKLSDKKIVNITIDMKQFF---TITQ 422 (634)
Q Consensus 362 l~~~-~~~~~-~~~~~~~~L~~~~e~~K~~Ls~~~--------------~~~i~i~~~~g~~~~~~itr~~~e---~~~~ 422 (634)
+..+ +.... .+ ...+|++|+.++... .....+++.+|.. ++|+++.|. .+++
T Consensus 197 l~~~~~~~~~~~~-------~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lpdg~~--i~i~~erf~~~E~Lf~ 267 (394)
T 1k8k_B 197 LLLRGYAFNHSAD-------FETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRI--IKVGGERFEAPEALFQ 267 (394)
T ss_dssp HHHTTCCCCTTTT-------HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSCE--EEECTHHHHTGGGGTC
T ss_pred HHhcCCCCCcHHH-------HHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECCCCCE--EEECchhhcChHhhCC
Confidence 9875 21110 11 234566666654321 1123345556554 556777663 2333
Q ss_pred HH-----HHHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCcCcHHHHHHHHhhccC-----------------C--cCCC
Q psy8852 423 HL-----VNRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT-----------------T--LLTS 476 (634)
Q Consensus 423 ~~-----~~~~~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-----------------~--~~~~ 476 (634)
|. ...+.++|.+.|.++..+ ..-.+.|+|+||+|.+|.+.++|++.++. + +..+
T Consensus 268 p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~ 347 (394)
T 1k8k_B 268 PHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDP 347 (394)
T ss_dssp GGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC-----
T ss_pred chhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecC
Confidence 32 235778888888877543 22347899999999999999999887742 1 2235
Q ss_pred CChhhHHHHHHHHHHh
Q psy8852 477 IDPDKAVVFGAAIQAN 492 (634)
Q Consensus 477 ~~p~~ava~GAa~~a~ 492 (634)
.+|..++.+|++++|.
T Consensus 348 ~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 348 PRRKHMVFLGGAVLAD 363 (394)
T ss_dssp ----------------
T ss_pred CCcceeEEhhhHHhhC
Confidence 6788999999999886
|
| >2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-21 Score=175.81 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=84.4
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCC-hhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCC
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKS-KIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 79 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~-~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~ 79 (634)
++|||++|||+++++ .++||+|||+|++++||||++..+ +.+++.+.++|++||+||++|+||.+|+.|++.+.+..
T Consensus 9 ~~~~y~iLgv~~~a~--~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~ 86 (155)
T 2l6l_A 9 KKDWYSILGADPSAN--ISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDD 86 (155)
T ss_dssp CSHHHHHHTCCTTCC--HHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHH
T ss_pred CCChhHhcCCCCCCC--HHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhh
Confidence 368999999999765 789999999999999999998765 46777888999999999999999999999999887665
Q ss_pred CccccccCCCHHHHHHHHHHHHH
Q psy8852 80 LNTKLNLNFSHDFLEQQMKWRET 102 (634)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~e~~e~ 102 (634)
+.. ....+++|+|++|+|+|.
T Consensus 87 ~~~--~~~~~~~~~~~~m~~~e~ 107 (155)
T 2l6l_A 87 LRN--VGPVDAQVYLEEMSWNEG 107 (155)
T ss_dssp HHT--TCSSSEEEETTTSEEETT
T ss_pred ccc--cccccceeeHHHhccccC
Confidence 443 456688899999998753
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=168.93 Aligned_cols=203 Identities=17% Similarity=0.178 Sum_probs=140.7
Q ss_pred CcEEEEeCCCCCHHHH-HHHHHHHHHcCC------------ceeeeecchhHHHHHhhhccCc-----cceEEEEEEeCC
Q psy8852 262 FGAVITVPAYFNDIQR-QFTKNAAKLAGL------------NVLRLLNEPTSAAIAYKLDKNI-----FEGIFAVYDLGG 323 (634)
Q Consensus 262 ~~~viTVPa~~~~~qr-~~l~~aa~~aGl------------~~~~li~Ep~AAa~~y~~~~~~-----~~~~vlV~D~Gg 323 (634)
..+++++|..+...+| +++++++...+- ..+.+++||.||++++...... .+..++|+|+||
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg 193 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS 193 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence 3799999999888887 589998886543 5788999999999998765421 477899999999
Q ss_pred CeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEec
Q psy8852 324 GTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLS 403 (634)
Q Consensus 324 gT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~ 403 (634)
||||++++ .++.+ +...++...+||..+++.+.+++.+++.....+. ...++.+ . +..
T Consensus 194 gTtd~~v~--~~~~~-~~~~s~s~~~G~~~~~~~i~~~l~~~~~g~~l~~-------~~i~~g~-------~--~~~--- 251 (355)
T 3js6_A 194 GTTIIDTY--QNMKR-VEEESFVINKGTIDFYKRIASHVSKKSEGASITP-------RMIEKGL-------E--YKQ--- 251 (355)
T ss_dssp SCEEEEEE--ETTEE-CGGGCEEESCCHHHHHHHHHHHTC--------CH-------HHHHSCC-------C--------
T ss_pred CcEEEEEE--cCCEE-ccccccCcchHHHHHHHHHHHHHHHhcCCCcCCH-------HHHhcCC-------c--ccc---
Confidence 99999988 34432 1112334689999999999999988753211221 1111111 0 000
Q ss_pred CCce--eEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHH--HHHHHHhhccCCcCCCCCh
Q psy8852 404 DKKI--VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKH--IHEGVSNFFKTTLLTSIDP 479 (634)
Q Consensus 404 ~g~~--~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~--v~~~l~~~f~~~~~~~~~p 479 (634)
.+.+ -.+.+ .+.+++.++++++++.+.+++.+.+ ...++.|+|+||++.++. +.+.+++.|+.. .||
T Consensus 252 ~~~~~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~----~~p 322 (355)
T 3js6_A 252 CKLNQKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDVFEKA----DDS 322 (355)
T ss_dssp ----------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSCEECC----SSG
T ss_pred ccccccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHHCCCC----CCc
Confidence 0000 11122 2456777888888888888887764 346799999999999998 889999998553 899
Q ss_pred hhHHHHHHHHHHhHhc
Q psy8852 480 DKAVVFGAAIQANFLS 495 (634)
Q Consensus 480 ~~ava~GAa~~a~~~~ 495 (634)
.+|+|.|+..++..+.
T Consensus 323 ~~anA~G~~~~~~~~~ 338 (355)
T 3js6_A 323 QFSNVRGYEKLGELLK 338 (355)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987764
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-17 Score=161.76 Aligned_cols=177 Identities=16% Similarity=0.114 Sum_probs=121.5
Q ss_pred cCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHH
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 366 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~ 366 (634)
++......|+||+|+++++....+ ....|+|+|||+++++++. .++.++.....++...|+.+|++.+++++.-.+
T Consensus 69 a~~~~~~~Vne~~aha~a~~~~~~---~~~~vl~lgG~~~~~~~~~-~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~ 144 (276)
T 4ehu_A 69 NYSDADKQISELSCHARGVNFIIP---ETRTIIDIGGQDAKVLKLD-NNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDV 144 (276)
T ss_dssp GCCSCSEECCHHHHHHHHHHHHST---TCCEEEEECSSCEEEEEEC-TTSCEEEEEEECSCSTTSHHHHHHHHHHHTCCG
T ss_pred HhhCCCcccchHHHHHHHHHHhCC---CCCeEEEEcCCCceEEEEE-ecCceEEEEeCCCcCcchhhHHHHHHHHhccCh
Confidence 566778899999999998766554 2346899999999999884 567788888888889999999999888775444
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeH----------HHHHHHHHHHHHHHHHHHHHHH
Q psy8852 367 FLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDM----------KQFFTITQHLVNRTILLSSKAL 436 (634)
Q Consensus 367 ~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr----------~~~e~~~~~~~~~~~~~i~~~l 436 (634)
.... . ..+......+ + .+.. ..+.. ...++++..+...+.+.+....
T Consensus 145 ~~~~-------~---------~~~~a~~~~~--i---~~~~--~~f~~s~~~~~~~~~~~~~di~a~~~~~v~~~l~~~~ 201 (276)
T 4ehu_A 145 SELG-------S---------ISMNSQNEVS--I---SSTC--TVFAESEVISHLSENAKIEDIVAGIHTSVAKRVSSLV 201 (276)
T ss_dssp GGHH-------H---------HHTTCSSCCC--C---CCCS--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhH-------H---------HHhcCCCCCC--c---CCcc--chhhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 3211 0 0000000000 0 0000 00000 1124455555555555554444
Q ss_pred HHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHh
Q psy8852 437 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 437 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~ 494 (634)
.+. ..++.|+|+||.+++|.|++.+++.||.+++.+.||++++|+|||++|...
T Consensus 202 ~~~----~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~~ 255 (276)
T 4ehu_A 202 KRI----GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDE 255 (276)
T ss_dssp HHH----CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHHH
T ss_pred Hhc----ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHHH
Confidence 433 357889999999999999999999999999999999999999999998754
|
| >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-18 Score=140.55 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=67.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-CChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQ-KSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 79 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~-~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~ 79 (634)
.|||++|||+++ ++.++||++||+|+++||||+++. .++.++..+.+.|++|++||++|+||.+|+.|+..|.|..
T Consensus 16 ~~~y~iLgv~~~--as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~ 92 (94)
T 1wjz_A 16 KDWYSILGADPS--ANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPS 92 (94)
T ss_dssp SCHHHHTTCCTT--CCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCSC
T ss_pred CChHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCCC
Confidence 599999999996 557899999999999999999874 3455667788999999999999999999999999998764
|
| >2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-17 Score=135.58 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=61.5
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
|+|||++|||++++ +.++||++||+|++++|||++... ++.+.+.|++||+||++|+||.+|+.|+...
T Consensus 1 M~d~Y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~----~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g 69 (99)
T 2lgw_A 1 MASYYEILDVPRSA--SADDIKKAYRRKALQWHPDKNPDN----KEFAEKKFKEVAEAYEVLSDKHKREIYDRYG 69 (99)
T ss_dssp CCCHHHHSSSCTTS--CHHHHHHHHHHHHHHTSTTTCCSC----CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCcc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 89999999999965 477999999999999999997643 3457789999999999999999999999865
|
| >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-17 Score=130.17 Aligned_cols=69 Identities=23% Similarity=0.423 Sum_probs=60.4
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
|.|||++|||+++ ++.++||++||+|++++|||++... ++.+.+.|++|++||++|+||.+|+.|+...
T Consensus 8 ~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 8 MVDYYEVLDVPRQ--ASSEAIKKAYRKLALKWHPDKNPEN----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SCCHHHHTTCCTT--CCHHHHHHHHHHHHTTSCTTTCSTT----HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CcCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 5799999999996 4578999999999999999997543 3457789999999999999999999999744
|
| >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-17 Score=132.61 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=60.6
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
|.|||++|||+++++ .++||++||+|+++||||++.... +.+.+.|++|++||++|+||.+|+.|+...
T Consensus 8 ~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (92)
T 2dmx_A 8 MANYYEVLGVQASAS--PEDIKKAYRKLALRWHPDKNPDNK----EEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76 (92)
T ss_dssp CCCHHHHHTCCTTCC--TTHHHHHHHHHHHHTCTTTCSSCS----HHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred CcCHHHHcCCCCCCC--HHHHHHHHHHHHHHHCCCCCCccH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 579999999999765 559999999999999999976542 357789999999999999999999999865
|
| >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=125.87 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=57.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
.|||++|||+++ ++.++|+++||+|++++|||++.... +.+.|+.|++||++|+||.+|+.|+..
T Consensus 3 ~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPD~~~~~~------~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 67 (77)
T 1hdj_A 3 KDYYQTLGLARG--ASDEEIKRAYRRQALRYHPDKNKEPG------AEEKFKEIAEAYDVLSDPRKREIFDRY 67 (77)
T ss_dssp CCSHHHHTCCTT--CCHHHHHHHHHHHHHTTCTTTCCCTT------HHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCcc------HHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 699999999996 55789999999999999999976432 567899999999999999999999874
|
| >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=126.77 Aligned_cols=67 Identities=27% Similarity=0.469 Sum_probs=58.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
.|||++|||+++ ++.++||++||+|++++|||++...+. +.+.|++|++||++|+||.+|+.|+...
T Consensus 7 ~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 7 GDYYQILGVPRN--ASQKEIKKAYYQLAKKYHPDTNKDDPK-----AKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp SCHHHHHTCCTT--CCHHHHHHHHHHHHHHTCTTTCSSCTT-----HHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCCHH-----HHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 589999999995 557899999999999999999875432 5678999999999999999999998744
|
| >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=132.78 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=60.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNG 77 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~ 77 (634)
+|||++|||+++ ++.++||++||+|+++||||++...+ .+.++|++|++||++|+||.+|+.|+..|.+
T Consensus 17 ~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 17 TALYDLLGVPST--ATQAQIKAAYYRQCFLYHPDRNSGSA-----EAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp SHHHHHHTCCTT--CCHHHHHHHHHHHHHHSCTTTCSSCS-----HHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred cCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCCH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 589999999996 55789999999999999999986543 2567899999999999999999999987754
|
| >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=125.48 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=58.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN 76 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~ 76 (634)
.|||++|||+++ ++.++||++||+|++++|||++.. ..+.+.|+.|++||++|+||.+|+.|+..+.
T Consensus 7 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 7 GDYYEILGVSRG--ASDEDLKKAYRRLALKFHPDKNHA------PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CCHHHHHTCCTT--CCHHHHHHHHHHHHTTSCTTTCSS------HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 589999999996 457899999999999999999753 2366889999999999999999999997543
|
| >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-16 Score=133.84 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=64.0
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN 76 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~ 76 (634)
.|||++|||++++ ++.++||+|||+|++++|||++++ ..+++.+.+.|++|++||++|+||.+|+.|+..+.
T Consensus 15 ~~~y~iLgv~~~a-~s~~eIk~aYr~l~~~~HPDk~~~--~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 15 ENCYDVLEVNREE-FDKQKLAKAYRALARKHHPDRVKN--KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp SCHHHHTTCCGGG-CCHHHHHHHHHHHHHHTCGGGCCS--HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCC-CCHHHHHHHHHHHHHHHCcCCCCC--ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 5999999999974 268899999999999999999875 45567788999999999999999999999998764
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-17 Score=170.57 Aligned_cols=304 Identities=17% Similarity=0.155 Sum_probs=190.6
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC-------------------------------CcEEecH
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-------------------------------GKIYVGK 183 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-------------------------------~~~~~G~ 183 (634)
.|-||.||.++++++..+..|..+ +||+|+.... ...++|+
T Consensus 7 ~iViDnGs~~~KaG~ag~~~P~~v--------~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ 78 (427)
T 3dwl_A 7 PIIMDNGTGYSKLGYAGNDAPSYV--------FPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGN 78 (427)
T ss_dssp CEEECCCSSBC-CEETTSSSCSCC--------CBCCEECC------------------------------CCSSCCEETH
T ss_pred eEEEECCCCeEEEEECCCCCCCCc--------CCceEEeecccccccccccccccccccccccccccccCcccCCeEEch
Confidence 478999999999999876665433 5666654321 1357777
Q ss_pred hHHhhhccCCCchhhhhhhhcCCCCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCC--c
Q psy8852 184 KAKITQNIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNR--I 261 (634)
Q Consensus 184 ~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~--~ 261 (634)
+|...... .+-. ..|+ .++.+.-.+.+..+++|+... .++.. -
T Consensus 79 ea~~~~~~-----------~l~~--------~~Pi-------------~~GvI~dwd~~e~iw~~~~~~---~L~v~~~~ 123 (427)
T 3dwl_A 79 DALKKASA-----------GYSL--------DYPI-------------RHGQIENWDHMERFWQQSLFK---YLRCEPED 123 (427)
T ss_dssp HHHHTHHH-----------HCCC--------CCSE-------------ETTEECCHHHHHHHHHHHHHT---TSCCCGGG
T ss_pred HHhhCccc-----------CcEE--------ecCc-------------ccCeeccHHHHHHHHHHHHhH---hhCCCCcC
Confidence 77543210 0000 1232 235666778888888877642 23332 2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeecchhHHHHHhhhccCc--cceEEEEEEeCCCeEEEEEEEEeCCeE
Q psy8852 262 FGAVITVPAYFNDIQRQFTKNAA-KLAGLNVLRLLNEPTSAAIAYKLDKNI--FEGIFAVYDLGGGTFDISILKFKNGVF 338 (634)
Q Consensus 262 ~~~viTVPa~~~~~qr~~l~~aa-~~aGl~~~~li~Ep~AAa~~y~~~~~~--~~~~vlV~D~GggT~dvsv~~~~~~~~ 338 (634)
..+++|.|.......|+.+.+.+ +..|++.+.++.+|.+|+++.+..... ...+-+|+|+|+|+|+++.+. +|..
T Consensus 124 ~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~--~G~~ 201 (427)
T 3dwl_A 124 HYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVA--EGYV 201 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEE--TTEE
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEE--CCEE
Confidence 47999999999999999998877 789999999999999999988743210 124569999999999999872 2321
Q ss_pred EEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCCcce-----------EEEE---Ee--
Q psy8852 339 KVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSV-----------KLNV---KL-- 402 (634)
Q Consensus 339 ~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-----------~i~i---~~-- 402 (634)
+........+||+++|+.|.+++.++.... .=...++.+|+.++..... ...+ ++
T Consensus 202 -l~~~~~rl~~gG~~lt~~L~~lL~~~~~~~--------~~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~ 272 (427)
T 3dwl_A 202 -IGSSIKTMPLAGRDVTYFVQSLLRDRNEPD--------SSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASES 272 (427)
T ss_dssp -CGGGCEEESCCHHHHHHHHHHTTC----------------CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC--
T ss_pred -ehhhheeccccHHHHHHHHHHHHHHcCCCc--------hhHHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeC
Confidence 111112258999999999998887654321 1124566677766543110 0001 12
Q ss_pred cCCceeEEEEeHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCCc--CCCCeEEEEcCCcCcHHHHHHHHhhcc-
Q psy8852 403 SDKKIVNITIDMKQFF---TITQHL------VNRTILLSSKALMDANLTI--KDINNVILVGGSTRMKHIHEGVSNFFK- 470 (634)
Q Consensus 403 ~~g~~~~~~itr~~~e---~~~~~~------~~~~~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~f~- 470 (634)
.+|....+++..+.|. -+++|- ...+.+++.+.|.++..+. .-...|+|+||+|.+|.+.++|.+.+.
T Consensus 273 ~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~ 352 (427)
T 3dwl_A 273 ITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKR 352 (427)
T ss_dssp -------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHH
T ss_pred CCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHH
Confidence 3455556777777763 344441 2457788888888765321 112569999999999999999886541
Q ss_pred ---------------------CCcCCCCChhhHHHHHHHHHHh
Q psy8852 471 ---------------------TTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 471 ---------------------~~~~~~~~p~~ava~GAa~~a~ 492 (634)
.++..+.++..++=.|++++|.
T Consensus 353 l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 353 IVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp HHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHH
T ss_pred hhhhhccccccccccCCCceeEEEecCCccccceecCceeecc
Confidence 1233456778899999999985
|
| >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-16 Score=122.24 Aligned_cols=62 Identities=26% Similarity=0.387 Sum_probs=55.3
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.|||++|||+++ ++..+|+++||+|++++|||+++.. .+.|++|++||++|+||.+|+.|+.
T Consensus 8 ~~~y~iLgl~~~--a~~~eIk~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~ 69 (73)
T 2och_A 8 TGYYDVLGVKPD--ASDNELKKAYRKMALKFHPDKNPDG--------AEQFKQISQAYEVLSDEKKRQIYDQ 69 (73)
T ss_dssp CCHHHHHTCCTT--CCHHHHHHHHHHHHHHTCTTTCTTC--------HHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCcCH--------HHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 489999999995 5578999999999999999997542 3578999999999999999999986
|
| >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-16 Score=126.45 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=58.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhc
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN 76 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~ 76 (634)
.|||++|||+++ ++.++||++||+|++++|||++... .+.+.|++|++||++|+||.+|+.|+....
T Consensus 17 ~d~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~------~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 17 FDPYRVLGVSRT--ASQADIKKAYKKLAREWHPDKNKDP------GAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SCHHHHHTCCTT--CCHHHHHHHHHHHHHHSCTTTCCST------THHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCCCh------hHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 489999999996 5578999999999999999998752 256789999999999999999999997543
|
| >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-16 Score=126.61 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=58.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
.|||++|||+++ ++.++||++||+|++++|||++.. ..+.+.|++|++||++|+||.+|+.|+..+
T Consensus 7 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 72 (88)
T 2ctr_A 7 GSYYDILGVPKS--ASERQIKKAFHKLAMKYHPDKNKS------PDAEAKFREIAEAYETLSDANRRKEYDTLG 72 (88)
T ss_dssp CSHHHHHTCCTT--CCHHHHHHHHHHHHHHTCTTTCCS------HHHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred CCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCCC------hHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence 689999999996 557899999999999999999762 236789999999999999999999999754
|
| >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-16 Score=131.82 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
.|||++|||+++ ++.++||+|||+|++++||||+.+.+ .+.+.|++|++||++|+||.+|+.|+..+
T Consensus 20 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 86 (112)
T 2ctq_A 20 EDYYTLLGCDEL--SSVEQILAEFKVRALECHPDKHPENP-----KAVETFQKLQKAKEILTNEESRARYDHWR 86 (112)
T ss_dssp CCHHHHTTCCTT--SCHHHHHHHHHHHHHTTCTTTCTTCS-----THHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCcH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence 699999999996 55779999999999999999987543 26788999999999999999999999866
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-15 Score=158.01 Aligned_cols=304 Identities=14% Similarity=0.146 Sum_probs=196.0
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecC---CcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD---GKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 211 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~---~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~ 211 (634)
.|+||+||.++++++..++.|..+ +||+|+.... ...+||.++.... +. .
T Consensus 25 ~iVID~GS~~~kaG~ag~~~P~~v--------~PSvVg~~~~~~~~~~~vG~e~~~~~---r~---------------~- 77 (498)
T 3qb0_A 25 AVVIDPGSYTTNIGYSGSDFPQSI--------LPSVYGKYTADEGNKKIFSEQSIGIP---RK---------------D- 77 (498)
T ss_dssp CEEEECCSSEEEEEETTCSSCSEE--------EESEEEEESSCSSCCEECCTTGGGSC---CT---------------T-
T ss_pred eEEEECCCcEEEEEECCCCCeeee--------cCceeEEeccCCCccEEEecHHHhcC---cC---------------c-
Confidence 589999999999998766655444 7999998643 2477888642211 00 0
Q ss_pred ccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCC--CcC-cEEEEeCCCCCHHHHHHHHHHH-HHc
Q psy8852 212 NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNN--RIF-GAVITVPAYFNDIQRQFTKNAA-KLA 287 (634)
Q Consensus 212 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~--~~~-~~viTVPa~~~~~qr~~l~~aa-~~a 287 (634)
+. +...+.++.+.-.+.+..+++|+... .++. .-. .+++|.|.......|+.|.+++ +..
T Consensus 78 ------l~-------l~~Pi~~GvI~dwd~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f 141 (498)
T 3qb0_A 78 ------YE-------LKPIIENGLVIDWDTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGM 141 (498)
T ss_dssp ------EE-------EEESEETTEESCHHHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTS
T ss_pred ------eE-------EeccCcCCEEccHHHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhc
Confidence 00 01112345677778888888887753 2332 223 6999999999999999998864 789
Q ss_pred CCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHH--
Q psy8852 288 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN-- 365 (634)
Q Consensus 288 Gl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~-- 365 (634)
|++.+.++.+|.+|+++++... -||+|+|+|+|+++.+. +|.. +........+||+++|+.|.+++.+.
T Consensus 142 ~vpav~l~~~~vlalya~G~~t------glVVDiG~g~T~vvPI~--~G~~-l~~ai~rl~vgG~~lt~~L~~lL~~~~i 212 (498)
T 3qb0_A 142 QFEACYLAPTSTCVSFAAGRPN------CLVVDIGHDTCSVSPIV--DGMT-LSKSTRRNFIAGKFINHLIKKALEPKEI 212 (498)
T ss_dssp CCSEEEEEEHHHHHHHHHTCSS------EEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCSHHHHHHHHHHHTTTSCC
T ss_pred CCCeEeecchHHHHHHHcCCCe------EEEEEcCCCcEEEEEEe--CCEE-ccccceeccccHHHHHHHHHHHHHhccc
Confidence 9999999999999999887532 39999999999999874 3321 11111225799999999999998753
Q ss_pred ---Hh----------hcc---CCH--HHHHHHHHHHHHHHHHhcCCc--------------ceEEEEEecCCceeEEEEe
Q psy8852 366 ---AF----------LKK---LSY--KDVNILMIKSREIKELLSYQS--------------SVKLNVKLSDKKIVNITID 413 (634)
Q Consensus 366 ---~~----------~~~---~~~--~~~~~L~~~~e~~K~~Ls~~~--------------~~~i~i~~~~g~~~~~~it 413 (634)
+. ... .+. .....-+.-++.+|+.++.-. ......++.+|..+ .+.
T Consensus 213 ~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~yeLPDG~~i--~lg 290 (498)
T 3qb0_A 213 IPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEI--VFD 290 (498)
T ss_dssp CCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEECSSSCEE--EEC
T ss_pred cchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEECCCCCEE--EEC
Confidence 00 000 111 111112235677788765321 12345566677644 445
Q ss_pred HH-HHH---HHHHHH-----------------------------------------------------------------
Q psy8852 414 MK-QFF---TITQHL----------------------------------------------------------------- 424 (634)
Q Consensus 414 r~-~~e---~~~~~~----------------------------------------------------------------- 424 (634)
.+ .|. .++.|-
T Consensus 291 ~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (498)
T 3qb0_A 291 NETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADT 370 (498)
T ss_dssp HHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCCCCBCC-----------------------------------
T ss_pred chHhhhCchhhCCHhHcCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44 332 122221
Q ss_pred --------------------HHHHHHHHHHHHHHcCCCcC--CCCeEEEEcCCcCcHHHHHHHHhhc----c---CCcCC
Q psy8852 425 --------------------VNRTILLSSKALMDANLTIK--DINNVILVGGSTRMKHIHEGVSNFF----K---TTLLT 475 (634)
Q Consensus 425 --------------------~~~~~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~f----~---~~~~~ 475 (634)
...+-+++.+.+.++..+.. -...|+|+||+|.+|.+.++|.+.+ + .++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p~~~i~v~~ 450 (498)
T 3qb0_A 371 PNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPSLKFRILT 450 (498)
T ss_dssp ------------------CCSCCHHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSTTSCCCEEC
T ss_pred ccccccccccccccccccccCCCchHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHHHHHHHHHHhCCCCeeEEEc
Confidence 01245667777776654321 1278999999999999999998765 2 23333
Q ss_pred C---CChhhHHHHHHHHHHh
Q psy8852 476 S---IDPDKAVVFGAAIQAN 492 (634)
Q Consensus 476 ~---~~p~~ava~GAa~~a~ 492 (634)
+ .++..++=.|++++|.
T Consensus 451 ~~~~~er~~s~WiGgsilas 470 (498)
T 3qb0_A 451 TGHTIERQYQSWLGGSILTS 470 (498)
T ss_dssp CSCTGGGGSHHHHHHHHHHT
T ss_pred CCCCCccCccEEcccEEEec
Confidence 3 4567889999999885
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-16 Score=161.08 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=142.6
Q ss_pred CcEEEEeCCCCCH--HHHHHHHHHHHHc--------C------CceeeeecchhHHHHHhhhccCccceEEEEEEeCCCe
Q psy8852 262 FGAVITVPAYFND--IQRQFTKNAAKLA--------G------LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGT 325 (634)
Q Consensus 262 ~~~viTVPa~~~~--~qr~~l~~aa~~a--------G------l~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT 325 (634)
..+++++|..+.. .+|+.+++..+.- | +..+.+++||.+|.+.+. . ...+..++|+|+||||
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~-~-~~~~~~v~vvDiGggT 183 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ-E-NFKNKNVAVIDFGGLN 183 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC-C-CCTTCEEEEEEECSSC
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc-h-hhccCCEEEEEeCCCc
Confidence 4799999987664 3677787776631 2 235778899998887653 2 2267889999999999
Q ss_pred EEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecC
Q psy8852 326 FDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK-NAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSD 404 (634)
Q Consensus 326 ~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~-~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~ 404 (634)
||++++. ++.+ +...++...+||.++++.+.+++.+ +++... +. ..++++|+. . .. ..
T Consensus 184 td~~v~~--~g~~-~~~~~~~~~~G~~~~~~~i~~~l~~~~~g~~i-~~-------~~~e~i~~~-g---~~--~~---- 242 (329)
T 4apw_A 184 MGFSLYR--NCVV-NPSERFIEEHGVKDLIIRVGDALTDLNNGNLI-TN-------EQAESALNN-G---YM--KK---- 242 (329)
T ss_dssp EEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHTSSSSCSSCSCT-TS-------BTTTTCSSS-C---SS--CE----
T ss_pred EEEEEEE--CCEE-eeccccchhhHHHHHHHHHHHHHHhhccCCCC-CH-------HHHHHHHhc-C---Cc--cc----
Confidence 9999988 3433 2222345789999999999998887 665332 10 122223221 0 00 00
Q ss_pred CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHH
Q psy8852 405 KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVV 484 (634)
Q Consensus 405 g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava 484 (634)
|.+. ..+..+++++.++++++.+.+.+++. . .+.+.++.|+|+||++.+ +.+.+++.|+.++....||..|+|
T Consensus 243 g~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~-~---~~~~~~~~IvltGGGA~l--~~~~l~~~~~~~v~v~~~P~~a~a 315 (329)
T 4apw_A 243 GGEI-DTESSTVIKKVKEKFLKDAIKLIEKR-G---FKLDQLDSLIFIGGTTQK--LKEQISKTYPNNSIITNNSQWTTC 315 (329)
T ss_dssp ECTT-CCSTTHHHHHHHHHHHHHHHHHHHHH-T---CCTTSCSEEEEESTTHHH--HHHHHHHHSTTCEECCSSGGGHHH
T ss_pred CCcc-hhHHHHHHHHHHHHHHHHHHHHHHHc-C---CCHHHccEEEEECChHHH--HHHHHHHHcCCCCEecCCChhhHH
Confidence 1111 13456788888888888888888776 3 344457999999999997 679999999977778899999999
Q ss_pred HHHHHHHhHh
Q psy8852 485 FGAAIQANFL 494 (634)
Q Consensus 485 ~GAa~~a~~~ 494 (634)
+|+..++...
T Consensus 316 ~G~~~~~~~k 325 (329)
T 4apw_A 316 EGLYKVAVAK 325 (329)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999987654
|
| >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-15 Score=128.09 Aligned_cols=65 Identities=26% Similarity=0.328 Sum_probs=58.0
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.|||++|||+++ ++.++||++||+|++++|||++... ..+.+.|++|++||++|+||.+|+.|+.
T Consensus 17 ~~~Y~vLgv~~~--as~~eIk~aYr~la~~~HPDk~~~~-----~~a~~~f~~i~~Ay~vL~d~~~R~~YD~ 81 (109)
T 2ctw_A 17 ESLYHVLGLDKN--ATSDDIKKSYRKLALKYHPDKNPDN-----PEAADKFKEINNAHAILTDATKRNIYDK 81 (109)
T ss_dssp CCHHHHHTCCTT--CCHHHHHHHHHHHHHHSCTTTSTTC-----HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 589999999996 5588999999999999999998653 2367899999999999999999999986
|
| >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=125.05 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=56.4
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
.|||++|||+++ ++.++||++||+|++++|||++... .+.|++|++||++|+||.+|+.|+...
T Consensus 8 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 71 (92)
T 2o37_A 8 TKLYDLLGVSPS--ANEQELKKGYRKAALKYHPDKPTGD--------TEKFKEISEAFEILNDPQKREIYDQYG 71 (92)
T ss_dssp CHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCTTSTTCC--------HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCh--------HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence 589999999996 5578999999999999999997543 247899999999999999999999754
|
| >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.8e-16 Score=128.66 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=58.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
.|||++|||+++ ++.++||++||+|++++|||++...+. +.+.|++|++||++|+||.+|+.|+...
T Consensus 3 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 69 (103)
T 1bq0_A 3 QDYYEILGVSKT--AEEREIRKAYKRLAMKYHPDRNQGDKE-----AEAKFKEIKEAYEVLTDSQKRAAYDQYG 69 (103)
T ss_dssp CCSTTTTSSCSS--CCHHHHHHHHHHHHTTTCTTTCTTTCT-----HHHHHHHHTTTTTSTTCSHHHHHTTTST
T ss_pred CCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCCCcHH-----HHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 599999999996 557899999999999999999875432 5678999999999999999999998754
|
| >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-15 Score=122.58 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=52.8
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRS 69 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~ 69 (634)
.|||++|||+++ ++.++||++||+|+++|||||+.... +.+.|++||+||++|+||.+|+
T Consensus 27 ~~~y~iLgv~~~--as~~eIk~aYr~la~~~HPDk~~~~~------~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 27 KDSWDMLGVKPG--ASRDEVNKAYRKLAVLLHPDKCVAPG------SEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp SSHHHHHTCCTT--CCHHHHHHHHHHHHHHHCTTTCCCTT------HHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCCCcc------HHHHHHHHHHHHHHHCCccccc
Confidence 589999999995 55789999999999999999986532 4567999999999999999986
|
| >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-15 Score=116.98 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=53.2
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 71 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y 71 (634)
++|++|||++++.++..+||++||+|++++|||+... .++|++||+||++|+||.+|+.+
T Consensus 12 ~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~---------~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHHhhHHHHHHH
Confidence 6899999999855778999999999999999999532 36799999999999999999874
|
| >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-15 Score=129.12 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=56.7
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
.+||++|||+++++.+.++||+|||+|++++||||.+. .++|++||+||++|+||.+|+.|...
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---------~e~f~~I~~AYevL~d~~~R~~~~~~ 71 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---------TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---------HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence 37999999999888766899999999999999999653 25788999999999999999999753
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-14 Score=137.60 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=60.3
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHh
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKL 75 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l 75 (634)
|+|||++|||+++ ++.++||+|||+|++++||||++..+. +.++|+.|++||++|+||.+|+.|+...
T Consensus 1 ~~~~y~~l~~~~~--a~~~~ik~ay~~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~ 68 (210)
T 3apq_A 1 IQNFYSLLGVSKT--ASSREIRQAFKKLALKLHPDKNPNNPN-----AHGDFLKINRAYEVLKDEDLRKKYDKYG 68 (210)
T ss_dssp CCCHHHHHTCCTT--CCHHHHHHHHHHHHHHHCGGGCTTCTT-----HHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred CCCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCChH-----HHHHHHHHHHHHHHhCCHHHHHHHHHhc
Confidence 7899999999996 557899999999999999999875542 5678999999999999999999998754
|
| >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-14 Score=132.23 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=58.0
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 71 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y 71 (634)
.|||++|||++. ++.++||+|||+|++++||||+.+.+.+ ..+.+.|+.||+||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~~--As~~eIKkAYRklal~~HPDK~~~~~~e--~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADL--VTPEQVKKVYRKAVLVVHPDKATGQPYE--QYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGG--SSHHHHHHHHHHHHHHTCGGGGSSCTTH--HHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCC--CCHHHHHHHHHHHHHHHCcCcCCCcchH--HHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 489999999995 5578999999999999999998765432 36889999999999999999999876
|
| >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-15 Score=134.89 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=54.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
+|||++|||+++++.|.++||+|||++++++||||.++ .++|++||+||++|+||.+|+.|+..
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---------~e~F~~I~~AYevLsdp~kR~~YD~~ 74 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDF 74 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---------CTTTTHHHHHHHHHHHHHHHHTSCGG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence 37999999999888778899999999999999999643 24688999999999999999999763
|
| >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-14 Score=117.94 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=54.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--CChhhHHHHHHHHHHHHHHHHHcCChh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQ--KSKIDQDASVKLSTYLNKAYSILKDPF 66 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~--~~~~~~~~~~~~~~~i~~Ay~~L~d~~ 66 (634)
.|||++||++. ++..+||+|||++++++||||+++ .+++.+..++++|+.|++||++|+||.
T Consensus 41 ~d~Y~vl~~~~---As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM---IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS---CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC---CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 48999999985 567899999999999999999874 355566678899999999999999985
|
| >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-14 Score=114.77 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=52.4
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLR 68 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r 68 (634)
.++|++|||+++++ .++||+|||+|+++||||++... .+.+.++|++||+||++|+|+..|
T Consensus 16 ~~~y~vLgv~~~as--~~eIKkaYrkla~~~HPDk~~~~----~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 16 KEVTSVVEQAWKLP--ESERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHTTSSC--SHHHHHHHHHHHHHTCTTTSSSC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCc----hHHHHHHHHHHHHHHHHHHhhccc
Confidence 37899999999655 66999999999999999996543 245788999999999999998777
|
| >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-13 Score=110.89 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=50.2
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKD 64 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d 64 (634)
.++|++|||++.+ +..+||+|||+++++|||||+++.+. +..++++|+.|++||++|++
T Consensus 33 ~~~y~~Lgv~~~a--s~~eIKkAYRklal~~HPDK~~~~~~--~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPCKATGQPY--EQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSS--SHHHHHHHHHHHHHHTCHHHHTTSTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCchh--HhHHHHHHHHHHHHHHHHHh
Confidence 3799999999964 57899999999999999999875432 24678899999999999975
|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.3e-14 Score=143.31 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=0.0
Q ss_pred CCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 1 MKNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
++|||++|||+++++ .++||+|||+|+++||||++... .++++|++||+||++|+||.+|+.|+..
T Consensus 27 ~~d~Y~vLgv~~~as--~~eIk~aYr~la~~~HPDk~~~~------~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 92 (329)
T 3lz8_A 27 LKDYYAILGVQPTDD--LKTIKTAYRRLARKYHPDVSKEN------DAEAKFKDLAEAWEVLKDEQRRAEYDQL 92 (329)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCC--HHHHHHHHHHHHHHHCCCCCCCh------HHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 369999999999655 56999999999999999997532 3667899999999999999999999974
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-11 Score=136.08 Aligned_cols=117 Identities=15% Similarity=0.242 Sum_probs=83.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEE
Q psy8852 263 GAVITVPAYFNDIQRQFTKNA-AKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVL 341 (634)
Q Consensus 263 ~~viTVPa~~~~~qr~~l~~a-a~~aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~ 341 (634)
.+++|.|..++...|+.|.+. .+..|++.+.++.++.+|+++++... -+|+|+|.+.|.++-+. +|.. +.
T Consensus 200 pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~t------glVVDiG~~~T~v~PV~--dG~~-l~ 270 (593)
T 4fo0_A 200 RCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSS------TCIVDVGDQKTSVCCVE--DGVS-HR 270 (593)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSE------EEEEEECSSCEEEEEEE--SSCB-CG
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCc------eEEEEeCCCceeeeeeE--CCEE-eh
Confidence 499999999999999888775 66779999999999999999987554 48999999999988653 2211 11
Q ss_pred EEcCCCCccchhHHHHHHHHHHHHH-hhcc---CCHHHHHHHHHHHHHHHHHhcC
Q psy8852 342 SVGGDSNLGGDDFDYCLFSWIVKNA-FLKK---LSYKDVNILMIKSREIKELLSY 392 (634)
Q Consensus 342 ~~~~~~~lGG~~id~~l~~~l~~~~-~~~~---~~~~~~~~L~~~~e~~K~~Ls~ 392 (634)
.......+||.++++.|.++|..+- .... ..... +..++.+|+.++.
T Consensus 271 ~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d----~~~v~~iKe~~c~ 321 (593)
T 4fo0_A 271 NTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMD----CLLLQHLKETFCH 321 (593)
T ss_dssp GGCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHH----HHHHHHHHHHHCB
T ss_pred hheEEecccHHHHHHHHHHHHHhcCCCccccccccchh----HHHHHHHHHHhcc
Confidence 1112257899999999998887652 1111 11111 2456778887654
|
| >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-13 Score=104.76 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=47.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLR 68 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r 68 (634)
.++|++|||++. +++.++|+++||+|++++|||+.. + .+.|++||+||++|+|+..|
T Consensus 14 ~~~y~iLgl~~~-~a~~~eIk~ayr~l~~~~HPDk~g--~-------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTEN-TLTKKKLKEVHRKIMLANHPDKGG--S-------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTT-TCCHHHHHHHHHHHHHHHCGGGTC--C-------HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCCCCCC--C-------HHHHHHHHHHHHHHhhhhhc
Confidence 378999999983 356789999999999999999932 1 24789999999999998766
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=136.77 Aligned_cols=195 Identities=18% Similarity=0.186 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHc-CC--ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCcc
Q psy8852 274 DIQRQFTKNAAKLA-GL--NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLG 350 (634)
Q Consensus 274 ~~qr~~l~~aa~~a-Gl--~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lG 350 (634)
..+-+.+.+|.+.+ |+ ++-. .||.||+++...+.. .+-.++++|+||||||++++.-+.-.+ ......|
T Consensus 367 ~~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE-~eLGvaiIDmGGGTTd~sVf~~G~lv~-----a~~ip~g 438 (610)
T 2d0o_A 367 RLQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPG-TTRPLAILDLGAGSTDASIINPKGDII-----ATHLAGA 438 (610)
T ss_dssp CCCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTT-CCSSEEEEEECSSEEEEEEECTTCCEE-----EEEEECS
T ss_pred HHHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-CcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccc
Confidence 34567888899999 99 6656 999999998877766 777899999999999999986555332 3336789
Q ss_pred chhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC----------cceEEEE--EecC----Cc------ee
Q psy8852 351 GDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ----------SSVKLNV--KLSD----KK------IV 408 (634)
Q Consensus 351 G~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------~~~~i~i--~~~~----g~------~~ 408 (634)
|++++..|..-| +... +..||++|. +... +...+.+ +-.+ .. ..
T Consensus 439 G~~VT~DIA~~L----gt~d---------~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~~Rv~~~~~~~ 504 (610)
T 2d0o_A 439 GDMVTMIIAREL----GLED---------RYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADE 504 (610)
T ss_dssp HHHHHHHHHHHH----TCCC---------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSC
T ss_pred hHHHHHHHHHHh----CCCC---------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeeeeecccccc
Confidence 999999987432 2221 378899999 5321 1123444 1100 01 11
Q ss_pred EEEEeHHH--HHHHHHHHHHHHHHH--HHHHHHHcCC-----CcCCCCeEEEEcCCcCcHHHHHHHHhhccC-CcC----
Q psy8852 409 NITIDMKQ--FFTITQHLVNRTILL--SSKALMDANL-----TIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLL---- 474 (634)
Q Consensus 409 ~~~itr~~--~e~~~~~~~~~~~~~--i~~~l~~~~~-----~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~~---- 474 (634)
-..| +.. +|+ ++-+-+++.+. +..+|+..+. +..+|..|+|+||+|.++.+.++.++.|+. ++.
T Consensus 505 L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VRiGrP 582 (610)
T 2d0o_A 505 LVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRG 582 (610)
T ss_dssp EEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEEC
T ss_pred eeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecC
Confidence 2245 555 666 55555554443 2333544332 245679999999999999999999999977 442
Q ss_pred ---CCCChhhHHHHHHHHHHh
Q psy8852 475 ---TSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 475 ---~~~~p~~ava~GAa~~a~ 492 (634)
....|..|+|.|.+++..
T Consensus 583 ~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 583 NIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp CGGGTSTTSCHHHHHHHHHHH
T ss_pred CccccCCCcHHHHHHHHHHHh
Confidence 246899999999998865
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-12 Score=135.56 Aligned_cols=193 Identities=17% Similarity=0.145 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHc-CC--ceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccch
Q psy8852 276 QRQFTKNAAKLA-GL--NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGD 352 (634)
Q Consensus 276 qr~~l~~aa~~a-Gl--~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 352 (634)
+-+.+.+|.+.+ |+ ++-. .||.||+++...+.. .+-.++++|+||||||++++.-+.-.+ ......||+
T Consensus 371 ~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE-~elGvaiIDmGgGTTd~sVf~~g~lv~-----a~~ip~gG~ 442 (607)
T 1nbw_A 371 QMQVIARELSARLQTEVVVGG--VEANMAIAGALTTPG-CAAPLAILDLGAGSTDAAIVNAEGQIT-----AVHLAGAGN 442 (607)
T ss_dssp CSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTT-CCSSEEEEEECSSEEEEEEECSSSCEE-----EEEEECCHH
T ss_pred HHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCC-CcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccchH
Confidence 346678888888 99 5555 999999998877766 777899999999999999987655433 333678999
Q ss_pred hHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC----------cceEEEE--EecC----Cc------eeEE
Q psy8852 353 DFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ----------SSVKLNV--KLSD----KK------IVNI 410 (634)
Q Consensus 353 ~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------~~~~i~i--~~~~----g~------~~~~ 410 (634)
+++..|..-| +... +..||++|. +... +...+.+ +..+ .. ..-.
T Consensus 443 ~VT~DIA~~L----g~~d---------~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~~R~~~~~~~~L~ 508 (607)
T 1nbw_A 443 MVSLLIKTEL----GLED---------LSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELV 508 (607)
T ss_dssp HHHHHHHHHH----TCSC---------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEE
T ss_pred HHHHHHHHHh----CCCC---------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeeeeeccccccee
Confidence 9999987432 2221 378899999 5321 1123444 1100 01 1112
Q ss_pred EEeHHH--HHHHHHHHHHHHHHH--HHHHHHHcCCC-----cCCCCeEEEEcCCcCcHHHHHHHHhhccC-CcC------
Q psy8852 411 TIDMKQ--FFTITQHLVNRTILL--SSKALMDANLT-----IKDINNVILVGGSTRMKHIHEGVSNFFKT-TLL------ 474 (634)
Q Consensus 411 ~itr~~--~e~~~~~~~~~~~~~--i~~~l~~~~~~-----~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~~------ 474 (634)
.| +.. +|+ ++-+-+++.+. +...|+..+.. ..+|..|+|+||+|.++.+.++.++.|+. ++.
T Consensus 509 ~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiGrP~~ 586 (607)
T 1nbw_A 509 PI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNI 586 (607)
T ss_dssp EE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCG
T ss_pred ee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCc
Confidence 44 555 666 55555554443 44557766542 34679999999999999999999999976 432
Q ss_pred -CCCChhhHHHHHHHHHHh
Q psy8852 475 -TSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 475 -~~~~p~~ava~GAa~~a~ 492 (634)
....|..|+|.|.+++..
T Consensus 587 ~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 587 RGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp GGTSCSCCHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHHHhhh
Confidence 246899999999998753
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.8e-11 Score=137.55 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=37.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||+++ ++.++||+|||+|++++||||+++.+ .+.++|++|++||++|+||.+|+.|+.
T Consensus 21 ~~~y~~lg~~~~--a~~~~i~~ay~~l~~~~hpd~~~~~~-----~~~~~f~~i~~ay~~L~~~~~r~~yd~ 85 (780)
T 3apo_A 21 QNFYSLLGVSKT--ASSREIRQAFKKLALKLHPDKNPNNP-----NAHGDFLKINRAYEVLKDEDLRKKYDK 85 (780)
T ss_dssp --CHHHHTCCTT--CCHHHHHHHHCC----------------------------CTHHHHHHSHHHHHHHTT
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCCCCh-----HHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence 589999999995 55789999999999999999976432 256789999999999999999999986
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-07 Score=91.44 Aligned_cols=172 Identities=12% Similarity=0.131 Sum_probs=97.9
Q ss_pred eeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc
Q psy8852 291 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 370 (634)
Q Consensus 291 ~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 370 (634)
...+++|.+|.+.+...-.+ ... .|+|+||+++.+..+ .++.+.-..... ...||.- .+.+++...++...
T Consensus 76 ~~~~v~Ei~ah~~ga~~~~~-~~~--~vidiGGqd~k~i~~--~~g~v~~~~mn~-~ca~GtG---~~le~~a~~lg~~~ 146 (270)
T 1hux_A 76 ADKQMSELSCHAMGASFIWP-NVH--TVIDIGGQDVKVIHV--ENGTMTNFQMND-KCAAGTG---RFLDVMANILEVKV 146 (270)
T ss_dssp CSEEECHHHHHHHHHHHHCT-TCC--EEEEEETTEEEEEEE--ETTEEEEEEEES-SCCTTSH---HHHHHHHHHHTCCT
T ss_pred CCCCcccHHHHHHHHHHhCC-CCC--EEEEECCCceEEEEE--eCCceeeecccc-ccchhhH---HHHHHHHHHhCCCH
Confidence 34679999999865433322 222 589999998887766 566543222222 2222331 35566666555432
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcceEEEEEecCCceeEEEEeHHHH----------HHHHHHHHHHHHHHHHHHHHHcC
Q psy8852 371 LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQF----------FTITQHLVNRTILLSSKALMDAN 440 (634)
Q Consensus 371 ~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~----------e~~~~~~~~~~~~~i~~~l~~~~ 440 (634)
. +.++... .... ++.+ +.. ...+.+.++ ++++..+++.+...+.+.++..+
T Consensus 147 ---~-------el~~la~--~~~~--p~~~----~~~-c~vfa~s~v~~l~~~g~~~~di~~av~e~Va~~i~~~~~~~~ 207 (270)
T 1hux_A 147 ---S-------DLAELGA--KSTK--RVAI----SST-CTVFAESEVISQLSKGTDKIDIIAGIHRSVASRVIGLANRVG 207 (270)
T ss_dssp ---T-------THHHHHT--TCCS--CCCC----CCC-SHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---H-------HHHHHHh--hCCC--CCCc----ccc-cchhHhHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 1111110 0000 0000 000 001122222 33334444444444444444332
Q ss_pred CCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHh
Q psy8852 441 LTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 441 ~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~ 494 (634)
. .+.|+++||.+++|.+++.+++.++.++..+.+|..+.|.|||++|...
T Consensus 208 ~----~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 208 I----VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp C----CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred C----CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 1 3679999999999999999999999999888888889999999998754
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.6e-05 Score=77.13 Aligned_cols=75 Identities=7% Similarity=0.044 Sum_probs=55.4
Q ss_pred EeHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcC-CcCcHHHHHHHHhhc---cCCcCCCCChhhHHHHH
Q psy8852 412 IDMKQFF-TITQHLVNRTILLSSKALMDANLTIKDINNVILVGG-STRMKHIHEGVSNFF---KTTLLTSIDPDKAVVFG 486 (634)
Q Consensus 412 itr~~~e-~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG-~s~~p~v~~~l~~~f---~~~~~~~~~p~~ava~G 486 (634)
.+++++. .++..+.+++..+.....+..+ ++.|+++|| .+..|.+++.+++.+ +.+++.+.+|..+.|.|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~~a~~~~-----i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlG 281 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAITVAREFK-----TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIG 281 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHH
Confidence 4566655 3444455555555554444443 557999999 899999999999975 67788899999999999
Q ss_pred HHHHH
Q psy8852 487 AAIQA 491 (634)
Q Consensus 487 Aa~~a 491 (634)
||+.+
T Consensus 282 AaL~~ 286 (287)
T 2ews_A 282 ALYLE 286 (287)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-07 Score=96.66 Aligned_cols=68 Identities=21% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
.+||+.||+++..+ ..+++++|+++++++|||+++. +.++..+++.|..|++||++|+||.+|..|+-
T Consensus 382 ~~~y~~lg~~~~~~--~~~~~~~y~~~~l~~~pd~~~~--~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAK--KQEIIKAYRKLALQWHPDNFQN--EEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCC--TTHHHHHHHHHHHHSCGGGCCS--HHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCC--HHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 48999999999765 4599999999999999999753 34467788999999999999999999999973
|
| >2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-06 Score=65.15 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=40.7
Q ss_pred CccccCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCCh
Q psy8852 4 YFDFFNLPKCF-NIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDP 65 (634)
Q Consensus 4 ~~~~l~~~~~~-~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~ 65 (634)
-|.+|||+++. .++.++|+++||+|....||||- -+. -..+.||+|++.|...
T Consensus 6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG--GS~-------yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG--GSF-------YLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT--CCH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC--CCH-------HHHHHHHHHHHHHHHH
Confidence 36899999851 15678999999999999999993 221 3445799999998644
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-05 Score=86.20 Aligned_cols=142 Identities=13% Similarity=0.227 Sum_probs=98.0
Q ss_pred HhHHHHHHHHHHHHHHHHhCCCc-----CcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeeecchhHHHHHhhhccCcc
Q psy8852 239 IEISAQIFITLKKIAENAVNNRI-----FGAVITVPAYFNDIQRQFTKNAA-KLAGLNVLRLLNEPTSAAIAYKLDKNIF 312 (634)
Q Consensus 239 ~~v~~~~L~~l~~~a~~~~~~~~-----~~~viTVPa~~~~~qr~~l~~aa-~~aGl~~~~li~Ep~AAa~~y~~~~~~~ 312 (634)
.+.+..++.|+... ..++... ..+++|.|..+....|+.|.+++ +..|++.+.++.+|.+|+++++.
T Consensus 196 WD~mE~Iw~y~f~~--~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl----- 268 (655)
T 4am6_A 196 ISDVTKLLEHALNS--ETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI----- 268 (655)
T ss_dssp HHHHHHHHHHHHBS--SSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHhcc--ccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC-----
Confidence 45566666665431 1333332 46999999999999999998876 56899999999999999998864
Q ss_pred ceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHh-hc--cCCHHHHHHHHHHHHHHHHH
Q psy8852 313 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF-LK--KLSYKDVNILMIKSREIKEL 389 (634)
Q Consensus 313 ~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~-~~--~~~~~~~~~L~~~~e~~K~~ 389 (634)
..+-+|+|+|+|+|+++.+. +|.. +........+||.++|+.|.+++.++-- .. ..+.. .=...++.+|+.
T Consensus 269 ~ttGLVVDiG~g~T~VvPV~--eG~v-l~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~---~e~eiVrdIKEk 342 (655)
T 4am6_A 269 STSTCVVNIGAAETRIACVD--EGTV-LEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSK---HGWLLAERLKKN 342 (655)
T ss_dssp SSCEEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSH---HHHHHHHHHHHH
T ss_pred CCceEEEcCCCceEEEEEEe--CCEE-EhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCCc---chHHHHHHHHHh
Confidence 12359999999999999873 3321 1111123689999999999999887621 10 01111 113567888888
Q ss_pred hcCC
Q psy8852 390 LSYQ 393 (634)
Q Consensus 390 Ls~~ 393 (634)
++.-
T Consensus 343 ~CyV 346 (655)
T 4am6_A 343 FTTF 346 (655)
T ss_dssp HCCC
T ss_pred eEEE
Confidence 8766
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.013 Score=58.97 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHHHhhhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhH
Q psy8852 276 QRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 354 (634)
Q Consensus 276 qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 354 (634)
....+..+-+..|++.-.+-.|.+|...+.+....- .....+|+|+|||+|.+++.+ ++.+ .. ..+.++|+..+
T Consensus 99 ~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~--~~~~--~~-~~Sl~~G~v~l 173 (315)
T 1t6c_A 99 AEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK--GYKV--RE-VISLPIGIVNL 173 (315)
T ss_dssp HHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEE--TTEE--EE-EEEECCCHHHH
T ss_pred HHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEe--CCce--ee-EEEEeccHHHH
Confidence 345556666678998866666666665554443321 256799999999999999865 4433 22 23378999988
Q ss_pred HHHHH
Q psy8852 355 DYCLF 359 (634)
Q Consensus 355 d~~l~ 359 (634)
.+.+.
T Consensus 174 ~e~~~ 178 (315)
T 1t6c_A 174 TETFF 178 (315)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 87763
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0033 Score=63.75 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=40.3
Q ss_pred CCeEEEEcC-CcCcHHHHHHHHhhcc------CCcCCCCChhhHHHHHHHHHH
Q psy8852 446 INNVILVGG-STRMKHIHEGVSNFFK------TTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 446 i~~ViLvGG-~s~~p~v~~~l~~~f~------~~~~~~~~p~~ava~GAa~~a 491 (634)
++.|+++|| .+..|.+++.|++.++ .+++.+.+|..+.|.|||+.+
T Consensus 306 i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 306 IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHHHHHHh
Confidence 457999999 9999999999999863 567778899999999999975
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.12 Score=51.91 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=29.0
Q ss_pred cCCceeeeecchhHHHHHhhhcc-CccceEEEEEEeCCCeEEEEEE
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGGTFDISIL 331 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~-~~~~~~vlV~D~GggT~dvsv~ 331 (634)
.|++ +.+.++..|+|++..... ....++++++-+|.| .-..++
T Consensus 96 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii 139 (321)
T 3vgl_A 96 VGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGII 139 (321)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEE
Confidence 4776 689999999999754322 223456788888887 445544
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.26 Score=49.49 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=33.1
Q ss_pred CCeEEEEcCCcC-cHHHHHHHHhhccC----------CcCCCCChhhHHHHHHHHHHhHh
Q psy8852 446 INNVILVGGSTR-MKHIHEGVSNFFKT----------TLLTSIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 446 i~~ViLvGG~s~-~p~v~~~l~~~f~~----------~~~~~~~p~~ava~GAa~~a~~~ 494 (634)
++.|+|.||.+. .+.+.+.+++.+.. ++..+.....+.+.||+.++...
T Consensus 263 p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~~~ 322 (326)
T 2qm1_A 263 PDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLALQF 322 (326)
T ss_dssp CSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGGGG
T ss_pred CCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHHHh
Confidence 568999999886 57777777665521 22223345678999999987543
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.35 Score=48.66 Aligned_cols=47 Identities=26% Similarity=0.259 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccCC---------cCCCCChhhHHHHHHHHHH
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKTT---------LLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~---------~~~~~~p~~ava~GAa~~a 491 (634)
+++.|+|-||.+..+.+.+.+++.+... +..+.-...+.++|||.++
T Consensus 269 ~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 269 DPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp CCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred CCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 3578999999988877777777665321 1223345688999999865
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.25 Score=49.70 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCcCc-HHHHHHHHhhcc----------CCcCCCCChhhHHHHHHHHHHh
Q psy8852 445 DINNVILVGGSTRM-KHIHEGVSNFFK----------TTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 445 ~i~~ViLvGG~s~~-p~v~~~l~~~f~----------~~~~~~~~p~~ava~GAa~~a~ 492 (634)
+++.|+|-||.++. +.+.+.|++.+. .++..+.....+.++|||.++.
T Consensus 260 dP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~~ 318 (321)
T 3r8e_A 260 DLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLIM 318 (321)
T ss_dssp CCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHHH
Confidence 35789999998876 666666555442 1233445567899999998874
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.72 Score=46.45 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCCCCC---hhhHHHHHHHHHHhHh
Q psy8852 425 VNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSID---PDKAVVFGAAIQANFL 494 (634)
Q Consensus 425 ~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~~~~---p~~ava~GAa~~a~~~ 494 (634)
.+.+...++++.+..+ ++.|+|+||.+....+++.|.+.+ |.+++.+.. .|.+++.|++.+....
T Consensus 229 ~~~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~ 299 (330)
T 2ivn_A 229 FAALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYK 299 (330)
T ss_dssp HHHHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHHh
Confidence 3444555555555443 568999999999999999999877 555555432 2467889988765443
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0051 Score=67.30 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=61.6
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHH
Q psy8852 411 TIDMKQFFTITQHLVNRTILLSSKA---LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGA 487 (634)
Q Consensus 411 ~itr~~~e~~~~~~~~~~~~~i~~~---l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GA 487 (634)
.-+|.++..++..+++.+.-.++.. |++.+ ..++.|.++||+++++.+.+.+.+.||.++..+. ..++.|.||
T Consensus 408 ~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g---~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~~-~~e~~alGA 483 (554)
T 3l0q_A 408 STTPEDMALRYLATIQALALGTRHIIETMNQNG---YNIDTMMASGGGTKNPIFVQEHANATGCAMLLPE-ESEAMLLGS 483 (554)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---CCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEES-CSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCCCEEEEeCccccCHHHHHHHHHhhCCeEEecC-CCcchHHHH
Confidence 4578888544445555444444333 34444 3588999999999999999999999999987644 457899999
Q ss_pred HHHHhHhcCCC
Q psy8852 488 AIQANFLSGNR 498 (634)
Q Consensus 488 a~~a~~~~~~~ 498 (634)
|+.|+.-.+.+
T Consensus 484 A~lA~~a~G~~ 494 (554)
T 3l0q_A 484 AMMGTVAAGVF 494 (554)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHcCCc
Confidence 99998766654
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0071 Score=65.41 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=57.1
Q ss_pred eHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFTI-TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~~-~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
++.++-.. ++.+.-.+...+ +.|++.+. .++.|.++||+++++.+.+.+.+.+|.++..+. +.++.|+|||+.|
T Consensus 395 ~~~~l~RAvlEgia~~~r~~l-~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~-~~e~~alGAA~lA 469 (515)
T 3i8b_A 395 TRENLARAFVEGLLCSQRDCL-ELIRSLGA---SITRILLIGGGAKSEAIRTLAPSILGMDVTRPA-TDEYVAIGAARQA 469 (515)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-HHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEC-CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHhCCceEecC-CcccHHHHHHHHH
Confidence 66665543 333333333333 34455554 478999999999999999999999999987643 4578899999999
Q ss_pred hHhcCC
Q psy8852 492 NFLSGN 497 (634)
Q Consensus 492 ~~~~~~ 497 (634)
+.-.+.
T Consensus 470 ~~a~G~ 475 (515)
T 3i8b_A 470 AWVLSG 475 (515)
T ss_dssp HHHHHC
T ss_pred HHHcCC
Confidence 865543
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0089 Score=64.93 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=60.9
Q ss_pred EEeHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 411 TIDMKQFFTI-TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 411 ~itr~~~e~~-~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.-+|.++... ++.+.-.+...++..-+..+. .++.|.++||+++++.+.+.+.+.||.++..+. ..|+.|+|||+
T Consensus 370 ~~~~~~i~RAvlEgia~~~r~~le~l~~~~g~---~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~-~~E~~alGAA~ 445 (526)
T 3ezw_A 370 GVNANHIIRATLESIAYQTRDVLEAMQADSGI---RLHALRVDGGAVANNFLMQFQSDILGTRVERPE-VREVTALGAAY 445 (526)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEEES-CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEECchhhCHHHHHHHHHHHCCEEEeCC-CCchHHHHHHH
Confidence 3466666533 333333444444443334554 478999999999999999999999999987644 45789999999
Q ss_pred HHhHhcCCCC
Q psy8852 490 QANFLSGNRG 499 (634)
Q Consensus 490 ~a~~~~~~~~ 499 (634)
.|+.-.|.++
T Consensus 446 lA~~a~G~~~ 455 (526)
T 3ezw_A 446 LAGLAVGFWQ 455 (526)
T ss_dssp HHHHHTTSSS
T ss_pred HHHHHhCCCC
Confidence 9988777654
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0087 Score=64.70 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=57.3
Q ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCc-CCCCChhhHHHHHHHHH
Q psy8852 412 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL-LTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 412 itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~-~~~~~p~~ava~GAa~~ 490 (634)
-++.++.. .+++.+.-.++..++...- .. ++.|.++||+++++.+.+.+.+.+|.++ .. ..+.++.|.|||+.
T Consensus 374 ~~~~~l~R---AvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~~e~~alGaA~l 447 (511)
T 3hz6_A 374 TTRAQILL---AVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNLNVSLLVK-PDAHLHPLRGLAAL 447 (511)
T ss_dssp CCHHHHHH---HHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHHTCEEEEC-CCGGGHHHHHHHHH
T ss_pred CCHHHHHH---HHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEe-cCCCCchHHHHHHH
Confidence 35666643 3333333333333332222 23 7899999999999999999999999998 65 45789999999999
Q ss_pred HhHhcCCC
Q psy8852 491 ANFLSGNR 498 (634)
Q Consensus 491 a~~~~~~~ 498 (634)
|+.-.+..
T Consensus 448 A~~a~G~~ 455 (511)
T 3hz6_A 448 AAVELEWS 455 (511)
T ss_dssp HHHHTTSC
T ss_pred HHHHhCCc
Confidence 98766644
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0064 Score=65.33 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=57.5
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFT-ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~-~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
++.++-. +++.+.-.+...++ .|++.+ ..++.|.++||+++++.+.+.+.+.+|.++..+..++.+.|.|||+.|
T Consensus 357 ~~~~~~rAvlEgia~~~~~~~~-~l~~~g---~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA 432 (484)
T 2itm_A 357 GPNELARAVLEGVGYALADGMD-VVHACG---IKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHTTT---CCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHcC---CCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHH
Confidence 5666543 33333333333333 334433 347889999999999999999999999999876665545899999999
Q ss_pred hHhcCCC
Q psy8852 492 NFLSGNR 498 (634)
Q Consensus 492 ~~~~~~~ 498 (634)
+.-.+..
T Consensus 433 ~~~~g~~ 439 (484)
T 2itm_A 433 QIAANPE 439 (484)
T ss_dssp HHHHCTT
T ss_pred HHHcCCc
Confidence 8765543
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0085 Score=65.23 Aligned_cols=77 Identities=12% Similarity=0.212 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhcC
Q psy8852 419 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSG 496 (634)
Q Consensus 419 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~~ 496 (634)
.++..+++.+.-.++..++..+.....++.|.++||+++++.+.+.+.+.||.++..+ .+.++.|+|||+.|+.-.+
T Consensus 408 ~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 408 VEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEEC-CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEec-CCCCchHHHHHHHHHHHhC
Confidence 3344444444444455555544444457899999999999999999999999998764 4567999999999876544
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.012 Score=63.38 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=58.2
Q ss_pred eHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFTIT-QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~~~-~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
++.++-..+ +.+.-.+...+ +.|++.+. .++.|.++||+++++.+.+.+.+.+|.++..+. +.++.|.|||+.|
T Consensus 364 ~~~~l~RAvlEgia~~~r~~~-~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA 438 (504)
T 3ll3_A 364 QKPEMARAVIEGIIFNLYDAA-SNLIKNTK---KPVAINATGGFLKSDFVRQLCANIFNVPIVTMK-EQQSGTLAAMFLA 438 (504)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HHHHTTSC---CCSEEEEESGGGCSHHHHHHHHHHHTSCEEEES-CSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CCCEEEEeCchhcCHHHHHHHHHhhCCeEEecC-CCCchhHHHHHHH
Confidence 566665433 33333333333 33444442 588999999999999999999999999987643 5578999999999
Q ss_pred hHhcCCCC
Q psy8852 492 NFLSGNRG 499 (634)
Q Consensus 492 ~~~~~~~~ 499 (634)
+.-.+..+
T Consensus 439 ~~a~G~~~ 446 (504)
T 3ll3_A 439 RQALGLNQ 446 (504)
T ss_dssp HHHTTSCC
T ss_pred HHHcCccC
Confidence 87666543
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0092 Score=64.33 Aligned_cols=81 Identities=11% Similarity=0.196 Sum_probs=56.9
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHh
Q psy8852 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 413 tr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~ 492 (634)
++.++-. .+++.+.-.++..++...... .++.|.++||+++++.+.+.+.+.+|.++..+.. .++.|.|||+.|+
T Consensus 365 ~~~~l~r---AvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~-~e~~alGaA~lA~ 439 (497)
T 2zf5_O 365 GREHLAR---ATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADILNRKVIRPVV-KETTALGAAYLAG 439 (497)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEESC-SCHHHHHHHHHHH
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEcCC-CcchHHHHHHHHH
Confidence 5555543 334444444444444333222 5789999999999999999999999999876543 4689999999998
Q ss_pred HhcCCC
Q psy8852 493 FLSGNR 498 (634)
Q Consensus 493 ~~~~~~ 498 (634)
.-.+..
T Consensus 440 ~~~g~~ 445 (497)
T 2zf5_O 440 LAVDYW 445 (497)
T ss_dssp HHTTSS
T ss_pred HHhCcc
Confidence 766543
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.01 Score=64.04 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=58.2
Q ss_pred eHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFTIT-QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~~~-~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
++.++-..+ +.+.-.+...+ +.|++.+. .++.|.++||+++++.+.+.+.+.+|.++..+.. .++.|.|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~-~e~~alGaA~lA 445 (508)
T 3ifr_A 371 TRGHLWRALLEAVALAFRHHV-AVLDDIGH---APQRFFASDGGTRSRVWMGIMADVLQRPVQLLAN-PLGSAVGAAWVA 445 (508)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HHHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEEC-CSTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCC-CCchHHHHHHHH
Confidence 666665433 33333333333 33444454 4789999999999999999999999999876544 468899999999
Q ss_pred hHhcCCC
Q psy8852 492 NFLSGNR 498 (634)
Q Consensus 492 ~~~~~~~ 498 (634)
+.-.+..
T Consensus 446 ~~a~G~~ 452 (508)
T 3ifr_A 446 AIGGGDD 452 (508)
T ss_dssp HHHTCSS
T ss_pred HHHhCCC
Confidence 8766644
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.012 Score=63.52 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=58.8
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFT-ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~-~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
++.++-. +++.+.-.+...++..-+..+. .++.|.++||+++++.+.+.+.+.+|.++..+. +.++.|.|||+.|
T Consensus 374 ~~~~l~RAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~~-~~e~~alGaA~la 449 (501)
T 3g25_A 374 EKEHFIRATLESLCYQTRDVMEAMSKDSGI---DVQSLRVDGGAVKNNFIMQFQADIVNTSVERPE-IQETTALGAAFLA 449 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEEES-CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecchhcCHHHHHHHHHHhCCceEecC-CCcchHHHHHHHH
Confidence 5666654 3333434444444333222454 478999999999999999999999999986543 5678999999999
Q ss_pred hHhcCCCC
Q psy8852 492 NFLSGNRG 499 (634)
Q Consensus 492 ~~~~~~~~ 499 (634)
+.-.+.++
T Consensus 450 ~~a~G~~~ 457 (501)
T 3g25_A 450 GLAVGFWE 457 (501)
T ss_dssp HHHTTSSS
T ss_pred HHHhCccC
Confidence 87666543
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=96.05 E-value=0.015 Score=62.73 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=59.1
Q ss_pred EeHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHH
Q psy8852 412 IDMKQFFTI-TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 412 itr~~~e~~-~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 490 (634)
-++.++-.. ++.+.-.+...++..-+..+. .++.|.++||+++++.+.+.+.+.+|.++..+ .+.++.|.|||+.
T Consensus 372 ~~~~~l~RAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~l 447 (506)
T 3h3n_X 372 TTKEDFVRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRA-ANLETTALGAAYL 447 (506)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---CCCEEEEESGGGGCHHHHHHHHHHHTSEEEEC-SSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEecccccCHHHHHHHHHHhCCeEEec-CCCcchhHHHHHH
Confidence 356666543 333434444444332222454 47899999999999999999999999998653 4567999999999
Q ss_pred HhHhcCCCC
Q psy8852 491 ANFLSGNRG 499 (634)
Q Consensus 491 a~~~~~~~~ 499 (634)
|+.-.+.++
T Consensus 448 A~~a~G~~~ 456 (506)
T 3h3n_X 448 AGLAVGFWK 456 (506)
T ss_dssp HHHHTTSSC
T ss_pred HHHHhCccC
Confidence 987666543
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=1.4 Score=43.55 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccC-CcCCCCChhhHHHHHHHHHHhH
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKT-TLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~-~~~~~~~p~~ava~GAa~~a~~ 493 (634)
+++.|+|.||.+..+.+.+.+++.+.. ++..+. ...+.+.||+.++..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 456899999988778888888877753 343344 557789999988754
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.1 Score=52.97 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCceeeeecchhHHHHHh-hhcc--Cc--cceEEEEEEeCCCeEEEEEEEE--eC--CeEEEEEEcCCCC
Q psy8852 278 QFTKNAAKLAGLNVLRLLNEPTSAAIAY-KLDK--NI--FEGIFAVYDLGGGTFDISILKF--KN--GVFKVLSVGGDSN 348 (634)
Q Consensus 278 ~~l~~aa~~aGl~~~~li~Ep~AAa~~y-~~~~--~~--~~~~vlV~D~GggT~dvsv~~~--~~--~~~~v~~~~~~~~ 348 (634)
+.+..+-+..|++. .+|+-.+-|.+.| +... .. .....+|+|+|||+|++++++- .. +.+ . .....+
T Consensus 106 ~fl~~v~~~tGi~i-eVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~--~-~~~Slp 181 (343)
T 3cer_A 106 EFEDEIERILGVRP-EVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQV--Q-GAFSMN 181 (343)
T ss_dssp HHHHHHHHHHSSCC-EECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSC--S-EEEEES
T ss_pred HHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCccccc--c-eeEEEe
Confidence 45666666679976 5565555555544 3322 11 2356899999999999998754 22 111 1 122368
Q ss_pred ccchhHHHHH
Q psy8852 349 LGGDDFDYCL 358 (634)
Q Consensus 349 lGG~~id~~l 358 (634)
+|+..+.+.+
T Consensus 182 lG~v~lt~~~ 191 (343)
T 3cer_A 182 IGSVRMTERH 191 (343)
T ss_dssp CCHHHHHHHT
T ss_pred hhHHHHHHHh
Confidence 9999888876
|
| >2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.82 Score=44.99 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhcc------------CCcCCCCChhhHHHHHHHHHHhH
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFK------------TTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~------------~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
+++.|+|.||.+..+.+.+.+++.+. .++..+.....+.+.||+.++..
T Consensus 227 ~p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 227 DPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQ 287 (292)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHHHHHH
Confidence 35689999998877777666665541 11222334457889999988754
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.045 Score=54.97 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCceeeeecchhHHHHHhhhcc--CccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhH
Q psy8852 277 RQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK--NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 354 (634)
Q Consensus 277 r~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~~--~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 354 (634)
...+..+-+..|++.-.+-.|-+|...+.+... .......+|+|+|||+|.+++.+ ++.+ .. ..+.++|...+
T Consensus 92 ~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~--~~~~--~~-~~Sl~lG~vrl 166 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGN--KNEI--LW-KQSFEIGGQRL 166 (315)
T ss_dssp HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEEC--SSCE--EE-EEEESCCHHHH
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEE--CCeE--ee-eEEEechhhHH
Confidence 345666666789987544455555444444322 21245789999999999999886 3322 21 22367888877
Q ss_pred HHHH
Q psy8852 355 DYCL 358 (634)
Q Consensus 355 d~~l 358 (634)
.+.+
T Consensus 167 ~e~f 170 (315)
T 3mdq_A 167 IDRF 170 (315)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 6654
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.02 Score=61.94 Aligned_cols=85 Identities=12% Similarity=0.050 Sum_probs=56.5
Q ss_pred EeHHHHHHH-HHHHHHHHHHHHHHHHHHcCC-CcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 412 IDMKQFFTI-TQHLVNRTILLSSKALMDANL-TIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 412 itr~~~e~~-~~~~~~~~~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
-+|.++-.. ++.+.-.+...++. |++.+. .. .++.|.++||+++++.+.+.+.+.+|.++..+. +.++.|+|||+
T Consensus 392 ~~~~~l~RAvlEgia~~~r~~l~~-l~~~~~~~g-~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~-~~e~~alGAA~ 468 (520)
T 4e1j_A 392 TGPAEFARAALEAVCYQTRDLLEA-MHKDWRRNG-NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPV-ILETTALGVAW 468 (520)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HHHHCC------CCEEEESGGGGCHHHHHHHHHHHTSCEEEES-CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCC-CcceEEEeCccccCHHHHHHHHHHhCCeEEecC-CCccHHHHHHH
Confidence 356666533 33333333333333 333200 01 478899999999999999999999999987643 46789999999
Q ss_pred HHhHhcCCCC
Q psy8852 490 QANFLSGNRG 499 (634)
Q Consensus 490 ~a~~~~~~~~ 499 (634)
.|+.-.+.++
T Consensus 469 lA~~a~G~~~ 478 (520)
T 4e1j_A 469 LAGSRAGVWP 478 (520)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHcCCcC
Confidence 9987766543
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.029 Score=60.53 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=58.6
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFT-ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~-~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
++.++-. +++.+.-.+...++..-+..+. .++.|.++||+++++.+.+.+.+.+|.++..+ .+.++.|.|||+.|
T Consensus 373 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA 448 (504)
T 2d4w_A 373 NRNHIARAALEATAFQSREVVDAMNADSGV---DLTELRVDGGMVANELLMQFQADQLGVDVVRP-KVAETTALGAAYAA 448 (504)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCcccCHHHHHHHHHHhCCeEEeC-CCCcchHHHHHHHH
Confidence 5666654 4444444444444443233443 36899999999999999999999999998754 34578999999999
Q ss_pred hHhcCCC
Q psy8852 492 NFLSGNR 498 (634)
Q Consensus 492 ~~~~~~~ 498 (634)
+.-.+..
T Consensus 449 ~~~~G~~ 455 (504)
T 2d4w_A 449 GIAVGFW 455 (504)
T ss_dssp HHHHTSS
T ss_pred HhhcCcc
Confidence 8766543
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.023 Score=61.16 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=55.9
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHH
Q psy8852 413 DMKQFFT-ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 413 tr~~~e~-~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a 491 (634)
++.++-. +++.+.-.+...++..-+..+. .++.|.++||+++++.+.+.+.+.+|.++..+. +.++.|.|||+.|
T Consensus 368 ~~~~~~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~~-~~e~~alGaA~la 443 (495)
T 2dpn_A 368 SRAHLARAALEGVAFQVRDVVLAMEEEAGV---RLKVLKADGGMAQNRLFLKIQADLLGVPVAVPE-VTETTALGAALMA 443 (495)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTSC---CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEES-CSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecccccCHHHHHHHHHHhCCeeEecC-CcccHHHHHHHHH
Confidence 5666543 4444444444444432222343 467899999999999999999999999987644 4568999999998
Q ss_pred hHhcC
Q psy8852 492 NFLSG 496 (634)
Q Consensus 492 ~~~~~ 496 (634)
+.-.+
T Consensus 444 ~~a~G 448 (495)
T 2dpn_A 444 GVGAG 448 (495)
T ss_dssp HHHHT
T ss_pred HhhcC
Confidence 76544
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.63 Score=47.90 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=27.7
Q ss_pred cCCceeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEE
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISIL 331 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~ 331 (634)
.|++ +.+.++..|||++........ .+++++-+|.| .-..++
T Consensus 188 ~~~p-V~v~NDanaaalaE~~~g~~~-~~~v~l~~GtG-iG~giv 229 (380)
T 2hoe_A 188 YGIE-VWVENDADMGAVGEKWYTKRD-DSFAWILTGKG-IGAGII 229 (380)
T ss_dssp HCSE-EEEEEHHHHHHHHHHHHTTCC-SCEEEEEESSS-CEEEEE
T ss_pred hCCC-EEEechHHHHHHHHHHhCCCC-CcEEEEEeCCc-eEEEEE
Confidence 4765 689999999999754332213 66788888887 334443
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.48 Score=50.85 Aligned_cols=172 Identities=14% Similarity=0.162 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCceeeeecchhHHHHHh-hhccCc-cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHH
Q psy8852 278 QFTKNAAKLAGLNVLRLLNEPTSAAIAY-KLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 355 (634)
Q Consensus 278 ~~l~~aa~~aGl~~~~li~Ep~AAa~~y-~~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id 355 (634)
..+..+-+..|++. .+|+-.+-|.+.| +..... ..+..+|+|+|||+|.+++.+ ++.+. . ....++|...+.
T Consensus 100 ~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~--~-~~Sl~lG~vrlt 173 (513)
T 1u6z_A 100 DFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE--NFEPI--L-VESRRMGCVSFA 173 (513)
T ss_dssp HHHHHHTTTCSSCE-EECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEE--TTEEE--E-EEEESCCHHHHH
T ss_pred HHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEe--CCeee--E-EEEEeccHHHHH
Confidence 44555555679877 4555555555544 332221 222689999999999999863 44332 1 223789998887
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHH----HHHhcC-CcceEEEEE--------e--cCCceeEEEEeHHHHHHH
Q psy8852 356 YCLFSWIVKNAFLKKLSYKDVNILMIKSREI----KELLSY-QSSVKLNVK--------L--SDKKIVNITIDMKQFFTI 420 (634)
Q Consensus 356 ~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~----K~~Ls~-~~~~~i~i~--------~--~~g~~~~~~itr~~~e~~ 420 (634)
+.+.. ....++....++...+.+. ...+.. ....-+-+- + ..+.+.. .+++++|+++
T Consensus 174 e~f~~-------~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~lvg~gGt~~~la~i~~~~~~~~~-~i~~~~l~~~ 245 (513)
T 1u6z_A 174 QLYFP-------GGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASGTIKAAHEVLMEMGEKDG-IITPERLEKL 245 (513)
T ss_dssp HHHSG-------GGBCCHHHHHHHHHHHHHHHTTTHHHHHHHCCSEEEEESHHHHHHHHHHHHTTCSSS-CBCHHHHHHH
T ss_pred HHHcc-------cCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEChHHHHHHHHHHhCCCCCC-eecHHHHHHH
Confidence 77632 1112333333222211111 000100 000111110 0 0011111 6999999999
Q ss_pred HHHHHH---------------------HHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhh
Q psy8852 421 TQHLVN---------------------RTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 468 (634)
Q Consensus 421 ~~~~~~---------------------~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~ 468 (634)
++.+.. .-...+...++..+ ++.|.+.+++=|=-.+.+.+.+.
T Consensus 246 ~~~l~~~~~~~r~~~~gl~~~Rad~i~~g~~Il~~i~~~~~-----~~~i~vs~~glreGll~~~~~~~ 309 (513)
T 1u6z_A 246 VKEVLRHRNFASLSLPGLSEERKTVFVPGLAILCGVFDALA-----IRELRLSDGALREGVLYEMEGRF 309 (513)
T ss_dssp HHHHTTCSBGGGCCCTTCCTTGGGTHHHHHHHHHHHHHHHT-----CSCBEECSCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHcC-----CCEEEECCCcHHHHHHHHHHHhc
Confidence 885432 23455666666654 56899999988877777777553
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.031 Score=60.22 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=57.6
Q ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCC-CeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHH
Q psy8852 413 DMKQFFT-ITQHLVNRTILLSSKALMDANLTIKDI-NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 413 tr~~~e~-~~~~~~~~~~~~i~~~l~~~~~~~~~i-~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~ 490 (634)
++.++-. +++.+.-.+...++..-+..+. .+ +.|.++||+++++.+.+.+.+.+|.++..+. +.++.|.|||+.
T Consensus 376 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~~-~~e~~alGaA~l 451 (503)
T 2w40_A 376 ERSHIVRALLEGIAFQLNEIVDSLTSDMGI---EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSK-YKEVTSLGAAVL 451 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEES-CSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccceEEEeCccccCHHHHHHHHHHHCCeEEecC-CCcchHHHHHHH
Confidence 5666553 4444444444444433222343 36 7899999999999999999999999987544 456899999999
Q ss_pred HhHhcCCC
Q psy8852 491 ANFLSGNR 498 (634)
Q Consensus 491 a~~~~~~~ 498 (634)
|+.-.+.+
T Consensus 452 a~~~~G~~ 459 (503)
T 2w40_A 452 AGLEVKIW 459 (503)
T ss_dssp HHHHTTCS
T ss_pred HHHHhCcc
Confidence 98765543
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.53 E-value=1.1 Score=44.45 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCc-Cc-HHHHHHHHhhccC--------CcCCCCChhhHHHHHHHHHHh
Q psy8852 445 DINNVILVGGST-RM-KHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 445 ~i~~ViLvGG~s-~~-p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa~~a~ 492 (634)
+++.|+|-||.+ .. +.+.+.+++.+.. ++..+.-...+.++|||.++.
T Consensus 237 ~p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 237 DPGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp CCSEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHH
Confidence 357899988877 54 5566555554421 122344456799999998875
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.033 Score=59.85 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=54.0
Q ss_pred EEeHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHH
Q psy8852 411 TIDMKQFFT-ITQHLVNRTILLSSKALMD-ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAA 488 (634)
Q Consensus 411 ~itr~~~e~-~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa 488 (634)
.-+|.++-+ +++.+.-.+...++. |++ .+. .++.|.++||+++++.+.+.+.+.+|.++.... .++.|.||+
T Consensus 361 ~~t~~~l~RAvlEgia~~~r~~~~~-l~~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~--~e~~alGaa 434 (489)
T 2uyt_A 361 PESDAELARCIFDSLALLYADVLHE-LAQLRGE---DFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP--VEASTLGNI 434 (489)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHTC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC--TTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhCC---CCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC--ccHhHHHHH
Confidence 446776654 334444444444433 333 343 378999999999999999999999999987543 588999997
Q ss_pred HHHhH
Q psy8852 489 IQANF 493 (634)
Q Consensus 489 ~~a~~ 493 (634)
+.|..
T Consensus 435 ~~A~~ 439 (489)
T 2uyt_A 435 GIQLM 439 (489)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=95.46 E-value=1.5 Score=43.95 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=28.2
Q ss_pred cCCceeeeecchhHHHHHhhhcc-CccceEEEEEEeCCCeEEEEEE
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGGTFDISIL 331 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~-~~~~~~vlV~D~GggT~dvsv~ 331 (634)
.|++ +.+.++..|||++..... .....+++++-+|.| .-.+++
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv 163 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLV 163 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEE
Confidence 4665 689999999998743322 123467788888887 334443
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.33 E-value=2.1 Score=42.15 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhhccC------CcCCCCChhhHHHHHHHHHHhHh
Q psy8852 445 DINNVILVGGSTRMKHIHEGVSNFFKT------TLLTSIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 445 ~i~~ViLvGG~s~~p~v~~~l~~~f~~------~~~~~~~p~~ava~GAa~~a~~~ 494 (634)
+++.|+|-||.+..+.+.+.|++.+.. ++..+.....+.+.||+.++...
T Consensus 237 ~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~~ 292 (297)
T 4htl_A 237 DPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQE 292 (297)
T ss_dssp CCSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHHH
Confidence 367899999999888777777776632 12234455678999999887643
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.27 E-value=1 Score=45.33 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCCCC---ChhhHHHHHHHHHHhHhcC
Q psy8852 424 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSI---DPDKAVVFGAAIQANFLSG 496 (634)
Q Consensus 424 ~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~~~---~p~~ava~GAa~~a~~~~~ 496 (634)
+.+.+.+.+.++++..+ ++.|+|+||.+....+++.|.+.+ |.+++.+. -.|.+++.|++.+.....+
T Consensus 233 l~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 233 AFAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHcC
Confidence 44455566666666654 568999999999999999999887 55555433 2467889999877655444
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=95.04 E-value=1.2 Score=46.10 Aligned_cols=43 Identities=7% Similarity=0.005 Sum_probs=28.0
Q ss_pred cCCceeeeecchhHHHHHhhhcc-CccceEEEEEEeCCCeEEEEEE
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGGTFDISIL 331 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~-~~~~~~vlV~D~GggT~dvsv~ 331 (634)
.|++ +.+.++..|||++..... .....+++++-+|.| .-..++
T Consensus 186 ~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 229 (406)
T 1z6r_A 186 TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVI 229 (406)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEE
Confidence 4776 678999999998754322 223456778888887 444444
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.23 Score=53.32 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCceeeeecchhHHHH-HhhhccCccceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhH
Q psy8852 276 QRQFTKNAAKLAGLNVLRLLNEPTSAAI-AYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 354 (634)
Q Consensus 276 qr~~l~~aa~~aGl~~~~li~Ep~AAa~-~y~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~i 354 (634)
....+..+-+..|++. .+|+-.+-|.+ +.+....-.....+|+|+|||+|.+++.+ ++.+. ...+.++|.-.+
T Consensus 102 ~~~fl~~i~~~tG~~i-evIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrl 175 (508)
T 3hi0_A 102 GPDFIREAEAILGCEI-EVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIK--DKSCG---EGITLPLGGLRL 175 (508)
T ss_dssp HHHHHHHHHHHHTSCE-EECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEE--TTEEC---CCEEESCCHHHH
T ss_pred HHHHHHHHHHHHCCCe-EEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEee--CCeee---eEEEecceEEeh
Confidence 3455666666789987 45555544444 44433321223459999999999999876 33321 122467888777
Q ss_pred HHH
Q psy8852 355 DYC 357 (634)
Q Consensus 355 d~~ 357 (634)
.+.
T Consensus 176 ~e~ 178 (508)
T 3hi0_A 176 SEQ 178 (508)
T ss_dssp HHH
T ss_pred hhc
Confidence 653
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=94.14 E-value=3.3 Score=43.17 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=21.4
Q ss_pred CCCceEEEEEeCCceEEEEEEE-CCe
Q psy8852 130 KNKCVSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 130 p~~~~vvGID~GTt~s~va~~~-~g~ 154 (634)
|...+++|||+|.|++++++++ +|+
T Consensus 105 ~~~~~~lGIDiGgt~i~~~l~d~~G~ 130 (429)
T 1z05_A 105 NLGWQFLSMRLGRGYLTIALHELGGE 130 (429)
T ss_dssp CTTEEEEEEEEETTEEEEEEEETTSC
T ss_pred CCCCEEEEEEECCCEEEEEEECCCCC
Confidence 4567899999999999999988 554
|
| >3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.81 E-value=2.3 Score=42.24 Aligned_cols=49 Identities=27% Similarity=0.355 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCcCc-----HHHHHHHHhhccC-------CcCCCCChhhHHHHHHHHHHhH
Q psy8852 445 DINNVILVGGSTRM-----KHIHEGVSNFFKT-------TLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 445 ~i~~ViLvGG~s~~-----p~v~~~l~~~f~~-------~~~~~~~p~~ava~GAa~~a~~ 493 (634)
+++.|+|-||.+.. +.+++.+++.+.. ++..+.-...+.++|||.++..
T Consensus 239 dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la~~ 299 (310)
T 3htv_A 239 DPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQ 299 (310)
T ss_dssp CCSEEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHHHH
Confidence 46789999998765 4567777766521 1122334567899999988754
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=8.1 Score=38.67 Aligned_cols=60 Identities=5% Similarity=-0.077 Sum_probs=41.2
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHHHc-C--CceeeeecchhHHHHHhhhccCccceEEEEEEeCCCe
Q psy8852 260 RIFGAVITVPAYFNDIQRQFTKNAAKLA-G--LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGT 325 (634)
Q Consensus 260 ~~~~~viTVPa~~~~~qr~~l~~aa~~a-G--l~~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT 325 (634)
.+..+.|++|...+......+++..+.. | .-.+.+.++..|||+++ . . ...+++=+|-|.
T Consensus 70 ~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~-~--~---~~~v~v~~GTGi 132 (347)
T 2ch5_A 70 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA-T--P---DGGVVLISGTGS 132 (347)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH-C--S---SCEEEEEESSSE
T ss_pred ceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh-C--C---CCcEEEEEcCCc
Confidence 5778999999988877666666666543 4 13568999999999984 2 2 234455556664
|
| >2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A | Back alignment and structure |
|---|
Probab=92.81 E-value=8.7 Score=38.48 Aligned_cols=43 Identities=21% Similarity=0.087 Sum_probs=27.9
Q ss_pred cCCceeeeecchhHHHHHhhhcc-CccceEEEEEEeCCCeEEEEEE
Q psy8852 287 AGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGGTFDISIL 331 (634)
Q Consensus 287 aGl~~~~li~Ep~AAa~~y~~~~-~~~~~~vlV~D~GggT~dvsv~ 331 (634)
.|++ +.+.++..|||++..... .....+++++-+|.| .-..++
T Consensus 131 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii 174 (343)
T 2yhw_A 131 LHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGII 174 (343)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEE
Confidence 3666 688999999999754322 113356778888887 444443
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.14 Score=54.72 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=52.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhh-ccCCcCCCCChhhHHHHHHHHHHhHh
Q psy8852 418 FTITQHLVNR--TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF-FKTTLLTSIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 418 e~~~~~~~~~--~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~-f~~~~~~~~~p~~ava~GAa~~a~~~ 494 (634)
..+...+++. +.-.++..++... +.+.|.++||+++++.+.+.+.+. ||.++..+.. .++.|+|||+.|+.-
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~----~~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~~-~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIG----STGRILVEGRFAEADVFVRALASLRPDCAVYTANA-HNDVSFGALRLIDPG 436 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTT----CCSEEEEESGGGGCHHHHHHHHHHSTTSEEEEESS-CCCTTGGGHHHHCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhc----CCCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcCC-CchHHHHHHHHhCcc
Confidence 3444445543 4444455555433 136899999999999999999999 9999876544 467899999998743
|
| >2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=91.15 E-value=12 Score=37.86 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=17.9
Q ss_pred ceEEEEEeCCceEEEEEEEC
Q psy8852 133 CVSIGIDFGTTNSLVAIVRN 152 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~ 152 (634)
.+++|||+|.|++.+++++.
T Consensus 29 ~~~lgiDiGgt~i~~~l~d~ 48 (373)
T 2q2r_A 29 PLTFVGDVGGTSARMGFVRE 48 (373)
T ss_dssp CEEEEEEECSSEEEEEEEEE
T ss_pred CeEEEEEEccccEEEEEEec
Confidence 57899999999999999874
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=89.98 E-value=3.5 Score=39.49 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=18.9
Q ss_pred ceEEEEEeCCceEEEEEEECCe
Q psy8852 133 CVSIGIDFGTTNSLVAIVRNNI 154 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~~g~ 154 (634)
.+.++||+|+|+++.+++++++
T Consensus 3 ~M~L~IDIGNT~ik~gl~~~~~ 24 (249)
T 3bex_A 3 PMYLLVDVGNTHSVFSITEDGK 24 (249)
T ss_dssp CEEEEEEECSSEEEEEEESSSS
T ss_pred ceEEEEEECCCeEEEEEEECCE
Confidence 4679999999999999987654
|
| >2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=25 Score=35.92 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCc-CcHHHHHHHHhhc
Q psy8852 444 KDINNVILVGGST-RMKHIHEGVSNFF 469 (634)
Q Consensus 444 ~~i~~ViLvGG~s-~~p~v~~~l~~~f 469 (634)
..+|.|+++||-+ +.+.+++.+.+.+
T Consensus 329 ggvDaIVFTgGIGEns~~vR~~i~~~l 355 (415)
T 2e1z_A 329 HRLDGIIFTGGIGENSVLIRQLVIEHL 355 (415)
T ss_dssp SSCCEEEEEHHHHHHCHHHHHHHHHTT
T ss_pred CCCCEEEECccccccCHHHHHHHHhhH
Confidence 4699999999999 9999999998654
|
| >3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A* | Back alignment and structure |
|---|
Probab=86.75 E-value=10 Score=39.60 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=28.4
Q ss_pred ceeeeecchhHHHHHhhh-----ccC--ccceEEEEEEeCCCeEEEEEEE
Q psy8852 290 NVLRLLNEPTSAAIAYKL-----DKN--IFEGIFAVYDLGGGTFDISILK 332 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~-----~~~--~~~~~vlV~D~GggT~dvsv~~ 332 (634)
..+++|+-.+-+.++|.. ..- .....+.++|+|||++.++...
T Consensus 150 ~~v~iisG~eEg~y~wi~vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~ 199 (452)
T 3zx3_A 150 QGAKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGASTQITFVP 199 (452)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHTTTTC---CCCCEEEEECSSEEEEEECC
T ss_pred CceEECCchhhhhhhHHHHHhhhccccCCCCCceEEEecCCCceEEEecc
Confidence 467888877766665532 210 0235688999999999998653
|
| >3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X* | Back alignment and structure |
|---|
Probab=84.05 E-value=17 Score=38.34 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCc--eeeeecchhHHHHHhhhccCccceEEEEEEeCCCeEEEEEEEE
Q psy8852 274 DIQRQFTKNAAKLAGLN--VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKF 333 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~--~~~li~Ep~AAa~~y~~~~~~~~~~vlV~D~GggT~dvsv~~~ 333 (634)
..-.+.+++|.+.-|++ ++.++++.+|++++..+... ..++-+=+|-|+=-+.+.+.
T Consensus 185 ~dv~~~L~~al~r~gl~v~v~aivNDtv~tll~~~y~~~---~~~iglIlGTG~N~~y~e~~ 243 (485)
T 3o8m_A 185 HDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTDP---QTKMGIIIGTGVNGAYYDVV 243 (485)
T ss_dssp SBHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHCT---TEEEEEEESSSEEEEEEEEG
T ss_pred ccHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHhhCCC---CcEEEEEEecCcceEEEeec
Confidence 45677899999888886 47899999999998776532 45555667877654444443
|
| >4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=81.69 E-value=2.9 Score=47.01 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc---cCCcCCCCC---hhhHHHHHHHHHHhHh
Q psy8852 427 RTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSID---PDKAVVFGAAIQANFL 494 (634)
Q Consensus 427 ~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~~~~~~---p~~ava~GAa~~a~~~ 494 (634)
-+.+.+..+.++.+ ++.|+|.||.+....+++.+.+.+ |.+++.+.. -|..+|.|+|++|+..
T Consensus 692 ~L~~~~~~a~~~tg-----~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~nDgGiALGQA~iA~~~ 760 (772)
T 4g9i_A 692 AFAHTAVERAREFG-----VKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRGDNGVNVGQAFLGGLY 760 (772)
T ss_dssp HHHHHHHHHHHTTT-----CSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-----cCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCCcchHHHHHHHHHHHH
Confidence 34555556656544 668999999999999999999887 445554322 3788999999888653
|
| >1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A* | Back alignment and structure |
|---|
Probab=81.63 E-value=25 Score=35.85 Aligned_cols=43 Identities=7% Similarity=0.047 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCc-CcHHHHHHHHhhc
Q psy8852 423 HLVNRTILLSSKALMDANLTIKDINNVILVGGST-RMKHIHEGVSNFF 469 (634)
Q Consensus 423 ~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f 469 (634)
-++.++.+.|-...... ..+|.|+++||-+ +.+.+++.+.+.+
T Consensus 304 ~f~yri~k~IGa~~a~L----ggvDaiVFTgGIGEns~~vR~~i~~~l 347 (408)
T 1g99_A 304 IFAYKVKKFIGEYSAVL----NGADAVVFTAGIGENSASIRKRILTGL 347 (408)
T ss_dssp HHHHHHHHHHHHHHHHT----TSCSEEEEEHHHHHHCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhh----CCCCEEEECccccccCHHHHHHHHhhh
Confidence 34444544444444433 3589999999999 9999999998654
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=81.01 E-value=1.1 Score=48.56 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=20.7
Q ss_pred ccCCCceEEEEEeCCceEEEEEEE-CCe
Q psy8852 128 SVKNKCVSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 128 ~~p~~~~vvGID~GTt~s~va~~~-~g~ 154 (634)
..|.+++++|||+|||.+++++++ +|+
T Consensus 5 ~~~~~~~~lgID~GTts~Ka~l~d~~G~ 32 (538)
T 4bc3_A 5 EHAPRRCCLGWDFSTQQVKVVAVDAELN 32 (538)
T ss_dssp ----CCEEEEEEECSSEEEEEEEETTCC
T ss_pred cCCCCCEEEEEEEcCcCEEEEEECCCCC
Confidence 345567999999999999999998 555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 634 | ||||
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 2e-55 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 6e-51 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 2e-43 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 4e-43 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 8e-38 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 7e-35 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 8e-32 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 8e-25 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 3e-21 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 6e-15 | |
| d1fpoa1 | 76 | a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma | 4e-14 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 9e-13 | |
| d1wjza_ | 94 | a.2.3.1 (A:) CSL-type zinc finger-containing prote | 5e-04 | |
| d1hdja_ | 77 | a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 | 6e-04 | |
| d1fafa_ | 79 | a.2.3.1 (A:) Large T antigen, the N-terminal J dom | 0.001 |
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 184 bits (468), Expect = 2e-55
Identities = 77/180 (42%), Positives = 107/180 (59%), Gaps = 5/180 (2%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 3 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 62
Query: 196 TISSIKRFIARDLKNINTNS----FPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 250
T+ +IKR I R ++ P+ G ++ +P +ISA++ +K
Sbjct: 63 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 122
Query: 251 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 310
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 123 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 172 bits (436), Expect = 6e-51
Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 195
+GID G+T S V + ++ E++ + G PS V D + +G AK ++P N
Sbjct: 4 VGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYV-AFTDTERLIGDAAKNQVAMNPTN 62
Query: 196 TISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIK----SPIEISAQIFI 247
T+ KR I R + S +P+ N G ++ + P E+S+ +
Sbjct: 63 TVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLT 122
Query: 248 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 307
+K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY L
Sbjct: 123 KMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 182
Query: 308 DK 309
DK
Sbjct: 183 DK 184
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 152 bits (386), Expect = 2e-43
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 21/203 (10%)
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIV 363
++ I AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V
Sbjct: 2 NRTI-----AVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 56
Query: 364 KNAFLKKLSY------KDVNILMIKSREIKELLSYQSSVKLNVK-----LSDKKIVNITI 412
+ F K + L + + K LS +N+ + K +NI +
Sbjct: 57 EE-FKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 115
Query: 413 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 472
+ ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ FF
Sbjct: 116 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 175
Query: 473 LLTSIDPDKAVVFGAAIQANFLS 495
++PD+AV GAA+Q L+
Sbjct: 176 PRKDVNPDEAVAIGAAVQGGVLT 198
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 151 bits (383), Expect = 4e-43
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 12/195 (6%)
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 367
++N+ ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD + + +
Sbjct: 4 ERNV-----LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 58
Query: 368 LK-----KLSYKDVNILMIKSREIKELLSYQSSVKLNV-KLSDKKIVNITIDMKQFFTIT 421
K + + V L K LS + + + L + +I +F +
Sbjct: 59 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELN 118
Query: 422 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPD 480
L T+ KAL DA L I++++LVGGSTR+ I + + +FF L SI+PD
Sbjct: 119 ADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPD 178
Query: 481 KAVVFGAAIQANFLS 495
+AV +GAA+QA LS
Sbjct: 179 EAVAYGAAVQAAILS 193
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 135 bits (341), Expect = 8e-38
Identities = 57/133 (42%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Query: 502 DNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDE 561
+ LLLDV PLSLGIET GG++ +I RNTTIP + FTT+ DNQ + I+V +GE
Sbjct: 5 QDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERA 64
Query: 562 LVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN 621
+ K+ +L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 65 MTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKG 124
Query: 622 M-NLDEIKSNLKD 633
+ ++I+ +++
Sbjct: 125 RLSKEDIERMVQE 137
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 125 bits (316), Expect = 7e-35
Identities = 57/114 (50%), Positives = 81/114 (71%)
Query: 505 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 564
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A++I V+QGE +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 565 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKP 618
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKA 115
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 117 bits (293), Expect = 8e-32
Identities = 72/114 (63%), Positives = 92/114 (80%)
Query: 507 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 566
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 567 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY 620
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 98.3 bits (244), Expect = 8e-25
Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 38/169 (22%)
Query: 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GKIYVGKKAKITQNIDPK 194
IGID GT N+LV + I PS++ G+I
Sbjct: 3 IGIDLGTANTLVFLRGKGIVVN---------EPSVIAIDSTTGEILKVGLEAKNMIGKTP 53
Query: 195 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 254
TI +I+ + ++ + A+
Sbjct: 54 ATIKAIRPMRDGV----------------------------IADYTVALVMLRYFINKAK 85
Query: 255 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 303
+N VI VP D++R+ +A AG + + L+ EP +AAI
Sbjct: 86 GGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI 134
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 90.0 bits (222), Expect = 3e-21
Identities = 29/187 (15%), Positives = 66/187 (35%), Gaps = 7/187 (3%)
Query: 317 AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDV 376
V D+GGGT +++++ + V + Y ++ V K
Sbjct: 10 MVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIE 69
Query: 377 NILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 436
+ S+E EL + S + L S +T+ + + +V + L
Sbjct: 70 IGNVFPSKENDELETTVSGIDL----STGLPRKLTLKGGEVREALRSVVVAIVESVRTTL 125
Query: 437 MDANLTIK---DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 493
+ + L GG + ++ + + +++ S +P AV GA + +
Sbjct: 126 EKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDK 185
Query: 494 LSGNRGI 500
++ + +
Sbjct: 186 VNILKKL 192
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 70.7 bits (172), Expect = 6e-15
Identities = 26/188 (13%), Positives = 61/188 (32%), Gaps = 29/188 (15%)
Query: 308 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 367
+ + + + + DLGG T DIS + + + GDS+LG
Sbjct: 2 ELDELDSL-LIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVT------------ 46
Query: 368 LKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR 427
+ + + S + + + D + I+ + +I +N
Sbjct: 47 ---------SAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNE 97
Query: 428 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI---DPDKAVV 484
+ + +++ +V+++GG + I + V + + +V
Sbjct: 98 ALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLV 155
Query: 485 FGAAIQAN 492
G + N
Sbjct: 156 NGMYLIGN 163
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Score = 65.4 bits (159), Expect = 4e-14
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSIL 62
+YF F LP + +D L + + Q++ HPD F S+ +Q A+V+ S +N+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 63 KDPFLRSIYLCKLNG 77
+ P +R+ YL L+G
Sbjct: 62 RHPLMRAEYLLSLHG 76
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 64.4 bits (156), Expect = 9e-13
Identities = 29/176 (16%), Positives = 48/176 (27%), Gaps = 29/176 (16%)
Query: 313 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 372
G V D+G T D+ + + V+ + +G D L I K
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 373 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 432
+ + +K V + L NR I
Sbjct: 64 DLAQEA------------------LSHPVMFRQKQVGGPEVSGPIL---EDLANRIIENI 102
Query: 433 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI--DPDKAVVFG 486
L + + ++I VGG + + I + TL+ D A G
Sbjct: 103 RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 153
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.3 bits (86), Expect = 5e-04
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPD-NFIQKSKIDQDASVKLSTYLNKAYS 60
K+++ + +M L + Y HPD + ++ +++A+
Sbjct: 16 KDWYSILGADP--SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73
Query: 61 ILKDPFLRSIYLCKLNG 77
IL + + Y + +G
Sbjct: 74 ILGNEETKKKYDLQRSG 90
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 6e-04
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
K+Y+ L + + + + Y + HPD + ++ + +AY +
Sbjct: 3 KDYYQTLGLAR--GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIA------EAYDV 54
Query: 62 LKDPFLRSIY 71
L DP R I+
Sbjct: 55 LSDPRKREIF 64
|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Murine polyomavirus [TaxId: 10634]
Score = 36.1 bits (83), Expect = 0.001
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSI 61
+ + LP+ D + + Y +HPD + S L LN +
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPD---------KGGSHALMQELNSLWGT 61
Query: 62 LKDPFLRSIY 71
K
Sbjct: 62 FKTEVYNLRM 71
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 634 | |||
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.95 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.91 | |
| d1fpoa1 | 76 | HSC20 (HSCB), N-terminal (J) domain {Escherichia c | 99.88 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.83 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.83 | |
| d1wjza_ | 94 | CSL-type zinc finger-containing protein 3 (J-domai | 99.74 | |
| d1xbla_ | 75 | DnaJ chaperone, N-terminal (J) domain {Escherichia | 99.72 | |
| d1hdja_ | 77 | HSP40 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1fafa_ | 79 | Large T antigen, the N-terminal J domain {Murine p | 99.61 | |
| d1gh6a_ | 114 | Large T antigen, the N-terminal J domain {Simian v | 99.59 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.51 | |
| d1nz6a_ | 98 | Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | 99.48 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.45 | |
| d1iura_ | 88 | Hypothetical protein KIAA0730 {Human (Homo sapiens | 99.34 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.23 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.55 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.92 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.86 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.85 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.83 | |
| d1fpoa2 | 95 | HSC20 (HSCB), C-terminal oligomerisation domain {E | 97.73 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.24 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 97.23 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 96.99 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 96.5 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 96.44 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 96.04 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 95.91 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 95.81 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 95.63 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 94.73 | |
| d2ch5a2 | 117 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 93.55 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 92.06 | |
| d2zgya1 | 157 | Plasmid segregation protein ParM {Escherichia coli | 91.15 | |
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 89.8 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 87.68 | |
| d1u6za3 | 177 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 83.73 | |
| d2aa4a2 | 170 | N-acetylmannosamine kinase NanK {Escherichia coli | 82.31 | |
| d2gupa2 | 175 | Hypothetical protein SP2142 {Streptococcus pneumon | 81.63 | |
| d1zbsa2 | 107 | Hypothetical protein PG1100 {Porphyromonas gingiva | 81.6 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 81.53 | |
| d2hoea2 | 169 | N-acetylglucosamine kinase {Thermotoga maritima [T | 80.86 | |
| d2ap1a1 | 186 | Putative regulator protein YcfX {Salmonella typhim | 80.36 | |
| d2ap1a2 | 117 | Putative regulator protein YcfX {Salmonella typhim | 80.34 | |
| d1r59o1 | 252 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 80.02 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=4.3e-35 Score=277.22 Aligned_cols=183 Identities=38% Similarity=0.600 Sum_probs=167.3
Q ss_pred ceEEEEEEeCCCeEEEEEEEEe----CCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc-----CCHHHHHHHHHHH
Q psy8852 313 EGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-----LSYKDVNILMIKS 383 (634)
Q Consensus 313 ~~~vlV~D~GggT~dvsv~~~~----~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~-----~~~~~~~~L~~~~ 383 (634)
+++|||||+||||+|+|++++. ++.++++++.++..+||++||+.|++|+.+++..+. .+++.+.+|+++|
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~ 81 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAA 81 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 3579999999999999999997 456899999999999999999999999999887654 4688899999999
Q ss_pred HHHHHHhcCCcceEEEEEe-----cCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCc
Q psy8852 384 REIKELLSYQSSVKLNVKL-----SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRM 458 (634)
Q Consensus 384 e~~K~~Ls~~~~~~i~i~~-----~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~ 458 (634)
|++|+.||.+.++++.++. ..+.++.++|||++|+++++|+++++.++|+++|++++++..+|+.|+|+||+|++
T Consensus 82 e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~ 161 (198)
T d1dkgd2 82 EKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRM 161 (198)
T ss_dssp HHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGS
T ss_pred HHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCC
Confidence 9999999999998888863 22356889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHhc
Q psy8852 459 KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 459 p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~~ 495 (634)
|+|++.|+++||.++..+.||++|||+|||++|+.+|
T Consensus 162 p~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 162 PMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999888899999999999999998764
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.9e-35 Score=274.66 Aligned_cols=184 Identities=35% Similarity=0.550 Sum_probs=171.5
Q ss_pred cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc-----CCHHHHHHHHHHHHHH
Q psy8852 312 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-----LSYKDVNILMIKSREI 386 (634)
Q Consensus 312 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~-----~~~~~~~~L~~~~e~~ 386 (634)
.+++|||||+||||+|+|++++.++.++++++.++..+||.+||++|++|+.+++.... .+++.+.+|+.+||++
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 82 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERA 82 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999886543 5788999999999999
Q ss_pred HHHhcCCcceEEEEEe-cCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHH
Q psy8852 387 KELLSYQSSVKLNVKL-SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGV 465 (634)
Q Consensus 387 K~~Ls~~~~~~i~i~~-~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l 465 (634)
|+.||.+.++.+.++. ..|.++.++|||++|+++++|+++++.++++++|+++++...+|+.|+|+||+|++|+|++.|
T Consensus 83 K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~i 162 (193)
T d1bupa2 83 KRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLL 162 (193)
T ss_dssp HHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHH
T ss_pred hhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHH
Confidence 9999999999998884 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-CCcCCCCChhhHHHHHHHHHHhHhc
Q psy8852 466 SNFFK-TTLLTSIDPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 466 ~~~f~-~~~~~~~~p~~ava~GAa~~a~~~~ 495 (634)
+++|+ .++..+.||++|||+|||++|+.++
T Consensus 163 ~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 163 QDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 99996 5566788999999999999999874
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1.3e-35 Score=277.63 Aligned_cols=176 Identities=44% Similarity=0.655 Sum_probs=164.1
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcccC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN 214 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~ 214 (634)
|||||||||||++|++.+|.++++.+++|++.+||+++|.+++.+++|..|..+..++|.++++++|||||+...+....
T Consensus 2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~ 81 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ 81 (183)
T ss_dssp CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHH
T ss_pred EEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHH
Confidence 58999999999999999999999999999999999999988878999999999999999999999999999988763221
Q ss_pred ----CCCeEEe-cCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q psy8852 215 ----SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 289 (634)
Q Consensus 215 ----~~~~~i~-~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl 289 (634)
.+||++. .++|.+.+...++.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+.|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~ 161 (183)
T d1dkgd1 82 RDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGL 161 (183)
T ss_dssp HHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTC
T ss_pred hhhhcCCEEEEEcCCCcEEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 6789988 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecchhHHHHHhhhccC
Q psy8852 290 NVLRLLNEPTSAAIAYKLDKN 310 (634)
Q Consensus 290 ~~~~li~Ep~AAa~~y~~~~~ 310 (634)
+++.+++||+|||++|+++++
T Consensus 162 ~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 162 EVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp EESCCCBHHHHHHHHHTCCC-
T ss_pred CEEEEecCHHHHHHHhcccCC
Confidence 999999999999999998754
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.6e-33 Score=263.81 Aligned_cols=175 Identities=38% Similarity=0.599 Sum_probs=156.1
Q ss_pred eEEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc-
Q psy8852 134 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN- 212 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~- 212 (634)
.+||||||||||++|++.+|+++++.+.+|++.+||+|+|.++ ++.+|..|......+|.++++++|||||+.+.+..
T Consensus 2 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~~~-~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEECCC-cEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 3799999999999999999999999999999999999999754 58999999999999999999999999999887722
Q ss_pred -cC--CCCeEEecCCCceEEEe--c--CcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q psy8852 213 -TN--SFPYDFQNKFGMLHIKT--I--SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 285 (634)
Q Consensus 213 -~~--~~~~~i~~~~~~~~~~~--~--~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~ 285 (634)
.. .+|+.+..+++.....+ . ...++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa~ 160 (185)
T d1bupa1 81 QSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGT 160 (185)
T ss_dssp HHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHHH
Confidence 21 57777775555554442 2 24789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeecchhHHHHHhhhcc
Q psy8852 286 LAGLNVLRLLNEPTSAAIAYKLDK 309 (634)
Q Consensus 286 ~aGl~~~~li~Ep~AAa~~y~~~~ 309 (634)
.|||+++.+|+||+|||++|++++
T Consensus 161 ~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 161 IAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HcCCCeEEEEcCHHHHHHHhcccC
Confidence 999999999999999999998764
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=9.9e-28 Score=214.25 Aligned_cols=134 Identities=43% Similarity=0.712 Sum_probs=129.0
Q ss_pred CCceeEeeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCC
Q psy8852 501 DDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPM 580 (634)
Q Consensus 501 ~~~~~~~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~ 580 (634)
.+++++.|++|+++||++.+|.|.+|||||++||+++++.|++..|+|+.+.|.|||||+..+.+|..||+|.|+++|+.
T Consensus 4 v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip~~ 83 (159)
T d1yuwa1 4 VQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPA 83 (159)
T ss_dssp TTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCC
T ss_pred cceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCCcC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEEEECCCeeEEEEEEEecCCeEEEEEEecCC-CCCHHHHHHhhhcC
Q psy8852 581 PAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY-NMNLDEIKSNLKDK 634 (634)
Q Consensus 581 ~~g~~~i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~~-~~~~~ei~~~~~~~ 634 (634)
|+|.++|.|+|++|.||+|+|+|.++.||++.+++|.++. .|+++||++|++++
T Consensus 84 ~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~ea 138 (159)
T d1yuwa1 84 PRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEA 138 (159)
T ss_dssp STTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHH
T ss_pred CCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875 59999999999863
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.3e-24 Score=183.46 Aligned_cols=116 Identities=49% Similarity=0.744 Sum_probs=112.5
Q ss_pred eEeeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCc
Q psy8852 505 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGR 584 (634)
Q Consensus 505 ~~~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~ 584 (634)
++.|++|+++||++.+|.|.+||+||+++|+++++.|++..|+|++++|.+||||+..+.+|..||++.|+++|+.|+|.
T Consensus 2 ~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G~ 81 (118)
T d1dkza2 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (118)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTC
T ss_pred EEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEECCCeeEEEEEEEecCCeEEEEEEecCC
Q psy8852 585 ARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY 620 (634)
Q Consensus 585 ~~i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~~ 620 (634)
++|+|+|++|.||+|+|+|.|+.+|++.+++|+...
T Consensus 82 ~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~ 117 (118)
T d1dkza2 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASS 117 (118)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTC
T ss_pred cEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCC
Confidence 999999999999999999999999999999998764
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4e-24 Score=179.77 Aligned_cols=115 Identities=63% Similarity=0.985 Sum_probs=111.3
Q ss_pred eeeccccceEEEecceeeEEeeCCCccCcceeeeeEeeccCceEEEEEEEecCccccccCceeeEEEEeCCCCCCCCccE
Q psy8852 507 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRAR 586 (634)
Q Consensus 507 ~~~~~~~~gi~~~~~~~~~li~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~g~~~ 586 (634)
.|++|+++||++.+|.|.+||+||+++|+++++.|++..|+|+.+.|.+||||+..+.+|..||++.|.++|+.|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCeeEEEEEEEecCCeEEEEEEecCCC
Q psy8852 587 IKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN 621 (634)
Q Consensus 587 i~v~~~~d~~g~l~v~~~~~~~g~~~~~~i~~~~~ 621 (634)
|+|+|++|.+|+|+|+|.|+.+|++.+++|+.+.+
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~g 115 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSC
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCCC
Confidence 99999999999999999999999999999987753
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2e-23 Score=162.95 Aligned_cols=76 Identities=34% Similarity=0.683 Sum_probs=73.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNG 77 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~ 77 (634)
.|||++|||+++|++|.++|+++||++++++|||++.+.++.++..+.+.++.||+||++|+||.+|+.|+|+|.|
T Consensus 1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~g 76 (76)
T d1fpoa1 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76 (76)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence 4899999999999999999999999999999999999998888999999999999999999999999999999987
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.2e-20 Score=166.45 Aligned_cols=133 Identities=28% Similarity=0.349 Sum_probs=101.3
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEec-CC-cEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcc
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLP-DG-KIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 212 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~-~~-~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 212 (634)
.||||||||||++|+..+| .++. .|+.+++.. .+ .+.+|..+.......+.+.. ..|+
T Consensus 2 ~iGIDlGTtns~va~~~~~--~v~~-------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~-~~k~---------- 61 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKG--IVVN-------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIK-AIRP---------- 61 (137)
T ss_dssp EEEEEECSSEEEEEETTTE--EEEE-------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEE-EECC----------
T ss_pred eEEEEcChhhEEEEEeCCC--EEee-------cCCcceEecCCCeEEEEehHHhhhhhhccccce-eEEe----------
Confidence 5899999999999874443 3443 356666644 23 35577777554443332211 1111
Q ss_pred cCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q psy8852 213 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 292 (634)
Q Consensus 213 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~viTVPa~~~~~qr~~l~~aa~~aGl~~~ 292 (634)
..++...+.+..+.++.+++..++...+..+.++|||||++|++.||+++++||+.||++++
T Consensus 62 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~AGl~vv 123 (137)
T d1jcea1 62 ------------------MRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKV 123 (137)
T ss_dssp ------------------EETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCSEE
T ss_pred ------------------ccCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHcCCCEE
Confidence 22346778889999999999999998899999999999999999999999999999999999
Q ss_pred eeecchhHHHHHh
Q psy8852 293 RLLNEPTSAAIAY 305 (634)
Q Consensus 293 ~li~Ep~AAa~~y 305 (634)
++|+||+|||+.+
T Consensus 124 ~li~EPtAAAiGa 136 (137)
T d1jcea1 124 FLIEEPMAAAIGS 136 (137)
T ss_dssp EEEEHHHHHHHHT
T ss_pred EEeCCHHHHHhCC
Confidence 9999999999964
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.1e-21 Score=184.70 Aligned_cols=178 Identities=14% Similarity=0.144 Sum_probs=130.8
Q ss_pred cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH-Hh
Q psy8852 312 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKE-LL 390 (634)
Q Consensus 312 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~-~L 390 (634)
++..+||||+||||||+|+++.++..+ .+....||.+++..+..++...+..... .............++. .-
T Consensus 5 ~~~gvlV~DiGGGT~Dvsi~~~g~~~~-----~~~~~~gg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (196)
T d1jcea2 5 EPSGNMVVDIGGGTTEVAVISLGSIVT-----WESIRIAGDEMDEAIVQYVRETYRVAIG-ERTAERVKIEIGNVFPSKE 78 (196)
T ss_dssp SSSCEEEEEECSSCEEEEEEETTEEEE-----EEEESCSHHHHHHHHHHHHHHHHCEECC-HHHHHHHHHHHCBCSCCHH
T ss_pred CCCceEEEEcCCCcEEEEEEEcCCEeE-----EeeecCCCcccccchhhhhhhhhccccc-chhHHHHHHHHhhhhhhhh
Confidence 567799999999999999998654322 3456889999999999999888765441 1111111111100000 00
Q ss_pred cCCcceEEEEE-ecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC---CCCeEEEEcCCcCcHHHHHHHH
Q psy8852 391 SYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIK---DINNVILVGGSTRMKHIHEGVS 466 (634)
Q Consensus 391 s~~~~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~---~i~~ViLvGG~s~~p~v~~~l~ 466 (634)
+......+... ..++......+++.++++++.+++.++...+.++++.+..... .++.|+||||+|++|+|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~ 158 (196)
T d1jcea2 79 NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQ 158 (196)
T ss_dssp HHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHH
T ss_pred ccccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHH
Confidence 01111233333 3567778889999999999999999999999999997764421 2467999999999999999999
Q ss_pred hhccCCcCCCCChhhHHHHHHHHHHhHhc
Q psy8852 467 NFFKTTLLTSIDPDKAVVFGAAIQANFLS 495 (634)
Q Consensus 467 ~~f~~~~~~~~~p~~ava~GAa~~a~~~~ 495 (634)
+.||.++....||++|||+|||+++..+.
T Consensus 159 ~~fg~~v~~~~~P~~aVA~GAai~~~~~~ 187 (196)
T d1jcea2 159 KETGISVIRSEEPLTAVAKGAGMVLDKVN 187 (196)
T ss_dssp HHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHCcCCccCCChHHHHHHHHHHHHHCHH
Confidence 99999999999999999999999876543
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=1.1e-18 Score=140.99 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=66.9
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-ChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHHhcCCC
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQK-SKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 79 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~-~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~l~~~~ 79 (634)
+|||++|||+++ ++.++||++|++|+++|||||+... +......++++|..|++||++|+||.+|+.|++.+.|..
T Consensus 16 ~d~Y~iLgv~~~--as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~ 92 (94)
T d1wjza_ 16 KDWYSILGADPS--ANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPS 92 (94)
T ss_dssp SCHHHHTTCCTT--CCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCSC
T ss_pred cChHHHcCCCCC--cCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCCCC
Confidence 699999999995 5577999999999999999998754 445567788999999999999999999999999987754
|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: DnaJ chaperone, N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=5.8e-18 Score=130.70 Aligned_cols=66 Identities=21% Similarity=0.352 Sum_probs=58.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
+|||++|||++++ +.++||+|||++++++|||++.+.+. +.+.|..|++||++|+||.+|+.|+-.
T Consensus 3 ~dyY~vLgv~~~A--s~~eIk~aYr~l~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~vL~d~~~R~~YD~~ 68 (75)
T d1xbla_ 3 QDYYEILGVSKTA--EEREIRKAYKRLAMKYHPDRNQGDKE-----AEAKFKEIKEAYEVLTDSQKRAAYDQY 68 (75)
T ss_dssp CCTTTTTCCSSSC--CHHHHHHHHHHHHHHTCCTTCTTTCH-----HHHHHHHHHHHHHHTTSSHHHHHHHHH
T ss_pred CCHHHHcCCCCCc--CHHHHHHHHHHHHhhhhhhccCCChH-----HHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 6999999999964 57799999999999999999875442 456799999999999999999999863
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.7e-17 Score=125.98 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=56.6
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 73 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~ 73 (634)
+|||++|||++++ +.++|++||+++++++|||++.... +.+++..|++||++|+||.+|+.|+.
T Consensus 3 kdyY~iLgv~~~a--s~~eIk~ay~~l~~~~hPD~~~~~~------~~~~~~~i~~Ay~vLsdp~~R~~YD~ 66 (77)
T d1hdja_ 3 KDYYQTLGLARGA--SDEEIKRAYRRQALRYHPDKNKEPG------AEEKFKEIAEAYDVLSDPRKREIFDR 66 (77)
T ss_dssp CCSHHHHTCCTTC--CHHHHHHHHHHHHHTTCTTTCCCTT------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CChHHHcCCCCCc--CHHHHHHHHHHHHHHhccccccchh------HHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 6999999999964 5779999999999999999976433 45678999999999999999999985
|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Murine polyomavirus [TaxId: 10634]
Probab=99.61 E-value=6.1e-17 Score=124.85 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=57.1
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
++||++|||++++..+.++||+|||++++++|||+... .++|++||+||++|+|+.+|..|++.
T Consensus 11 ~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~---------~e~~~~in~Ay~~L~d~~~r~~~~~~ 74 (79)
T d1fafa_ 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRMNLG 74 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC---------HHHHHHHHHHHHHHCCHHHHHHHccC
Confidence 37999999999988899999999999999999999532 24688999999999999999999664
|
| >d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Simian virus 40, Sv40 [TaxId: 10633]
Probab=99.59 E-value=3e-17 Score=138.12 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=56.8
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 74 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y~~~ 74 (634)
|||+||||++++..+..+||+|||+|++++||||.++ .++|++||+||++|+||.+|+.|+..
T Consensus 9 ~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~---------~e~F~~I~~AY~vLsd~~kR~~YD~~ 71 (114)
T d1gh6a_ 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---------TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh---------HHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence 7999999999988788899999999999999999653 14689999999999999999999854
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.4e-14 Score=129.53 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=103.4
Q ss_pred cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHH---HHHHH
Q psy8852 312 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKS---REIKE 388 (634)
Q Consensus 312 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~---e~~K~ 388 (634)
...++||+|+||||||+++++ ++...+....++..+||.++++.+.+++...+.... ......+.... ...+.
T Consensus 5 e~~~ilViDiGggTtDi~v~~--~~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 80 (163)
T d2zgya2 5 ELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS--SYLADDIIIHRKDNNYLKQ 80 (163)
T ss_dssp TTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGGG--HHHHHHHHHTTTCHHHHHH
T ss_pred CCCCEEEEECCCCcEEEEEEc--CCeEEEEEeeccccccchHHHHHHHHhhHHhhchhh--hhhHHHHHHhhcccccccc
Confidence 456899999999999999875 444455666777899999999999887764433222 10101110000 00000
Q ss_pred HhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhh
Q psy8852 389 LLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 468 (634)
Q Consensus 389 ~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~ 468 (634)
.......++.+++++++.+..+.+.+.+.+.+ ..+++.|+|+||+|+ .+++.|++.
T Consensus 81 ------------------~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~~----~~~~~~iil~GGGs~--ll~~~lk~~ 136 (163)
T d2zgya2 81 ------------------RINDENKISIVTEAMNEALRKLEQRVLNTLNE----FSGYTHVMVIGGGAE--LICDAVKKH 136 (163)
T ss_dssp ------------------HSSSSCTHHHHHHHHHHHHHHHHHHHHHHHTT----CCCCCEEEEESTTHH--HHHHHHHHT
T ss_pred ------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccccceEEEECchHH--HHHHHHHHH
Confidence 01112245666677777777776666666543 357899999999986 599999999
Q ss_pred ccC---CcCCCCChhhHHHHHHHHHH
Q psy8852 469 FKT---TLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 469 f~~---~~~~~~~p~~ava~GAa~~a 491 (634)
|+. ++....||..|+|+|+.++|
T Consensus 137 ~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 137 TQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp SCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred hCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 974 45678999999999999886
|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Auxilin J-domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.48 E-value=3.1e-15 Score=120.99 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=57.3
Q ss_pred CCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhhhHHH
Q psy8852 3 NYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 71 (634)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~r~~y 71 (634)
++|+.||+... ++.++||+|||++++++||||+.+.+ .+..+.+.|+.||+||++|+||.+|+.|
T Consensus 34 ~~y~~Lgl~~~--~t~~eIk~aYr~l~~~~HPDk~~~~~--~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y 98 (98)
T d1nz6a_ 34 TKWKPVGMADL--VTPEQVKKVYRKAVLVVHPDKATGQP--YEQYAKMIFMELNDAWSEFENQGQKPLY 98 (98)
T ss_dssp CSCCCCCGGGC--CSHHHHHHHHHHHHHHSCHHHHTTST--THHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred cCCeecCCCcc--CCHHHHHHHHHHHHHHhccccCCChH--HHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence 68999999984 66889999999999999999977654 3456788999999999999999999877
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=9.9e-14 Score=128.58 Aligned_cols=158 Identities=18% Similarity=0.140 Sum_probs=114.1
Q ss_pred cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhc
Q psy8852 312 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLS 391 (634)
Q Consensus 312 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 391 (634)
++..++|+|+|+|||+++++. ++.+.. ....++||++|++.|+..+. . -+..||+.|+.+.
T Consensus 5 k~~Gv~vvDiG~~tt~i~i~~--~G~l~~---~~~i~~GG~~iT~~Ia~~l~----i----------~~~~AE~iK~~~g 65 (191)
T d1e4ft2 5 KDRGVVVVNLGYNFTGLIAYK--NGVPIK---ISYVPVGMKHVIKDVSAVLD----T----------SFEESERLIITHG 65 (191)
T ss_dssp HHHCEEEEEECSSCEEEEEEE--TTEEEE---EEEESCCHHHHHHHHHHHHT----C----------CHHHHHHHHHHHC
T ss_pred hhCCEEEEEeCCCcEEEEEEE--CCeEEE---EEEEeeChHHHHHHHHHHhc----c----------cHHHHHHHHhhcc
Confidence 345689999999999999865 444322 22367999999999986443 2 2378999999875
Q ss_pred CC-----cceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------cCCCCeEEEEcCCcCcHH
Q psy8852 392 YQ-----SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT------IKDINNVILVGGSTRMKH 460 (634)
Q Consensus 392 ~~-----~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~------~~~i~~ViLvGG~s~~p~ 460 (634)
.. ....+.+... +......+++..+.+++++.++++...+++.++..... ...+..|+|+||+|++|.
T Consensus 66 ~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGGgs~l~g 144 (191)
T d1e4ft2 66 NAVYNDLKEEEIQYRGL-DGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPR 144 (191)
T ss_dssp CSCCTTCCCCEEEEECT-TSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGGGGSTT
T ss_pred ccccccccchhcccccc-cCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecchhhhhh
Confidence 32 2223433322 33445578999999999999999999888888753211 112456999999999999
Q ss_pred HHHHHHhhccCCcCC-----------------CCChhhHHHHHHHH
Q psy8852 461 IHEGVSNFFKTTLLT-----------------SIDPDKAVVFGAAI 489 (634)
Q Consensus 461 v~~~l~~~f~~~~~~-----------------~~~p~~ava~GAa~ 489 (634)
+.+.+++.|+.++.. ..+|..++|.|+++
T Consensus 145 l~~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 145 INELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp HHHHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred HHHHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 999999999866421 23688999999986
|
| >d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Hypothetical protein KIAA0730 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=5e-14 Score=110.84 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=50.5
Q ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHcCChhh
Q psy8852 2 KNYFDFFNLPKCFNIDMDLLDKIYYNFQKKIHPDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFL 67 (634)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~i~~~y~~~~~~~HPD~~~~~~~~~~~~~~~~~~~i~~Ay~~L~d~~~ 67 (634)
+++|++||++.+++ .++||+|||+|+++||||+++.. .+.+.+.|+.|++||++|+++..
T Consensus 16 ~~~y~iL~v~~~as--~~eIKkAYrrl~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~~~~~ 75 (88)
T d1iura_ 16 KEVTSVVEQAWKLP--ESERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRLEKQAF 75 (88)
T ss_dssp HHHHHHHHHTTSSC--SHHHHHHHHHHHHHTCTTTSSSC----HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCC--HHHHHHHHHHHHHHhccccccch----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999655 66999999999999999996543 44578899999999999986433
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.23 E-value=4.2e-12 Score=114.20 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=106.5
Q ss_pred cceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhc
Q psy8852 312 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLS 391 (634)
Q Consensus 312 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 391 (634)
+++++||+|+||||||++++...+..+ +...+.+...|+.+++..+.+.+..+++... ... ..+. +.
T Consensus 4 ~~g~~lviDIG~gTtDi~v~~~~~~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~~~~-~~~-------~~~~----~~ 70 (161)
T d2fsja1 4 QPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVV-PFD-------LAQE----AL 70 (161)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTTEE-CGGGCEEESCCHHHHHHHHHHHHHHHHCCCC-CHH-------HHHH----HT
T ss_pred CCCcEEEEEcCcCeEEEEEEECCCeEE-EEEEeccHhHHHHHHHHHHHHHHHHHHHhhh-hHH-------HHHH----HH
Confidence 567899999999999999988665543 2222334678999999999999998886543 111 1111 11
Q ss_pred CCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccC
Q psy8852 392 YQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 471 (634)
Q Consensus 392 ~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~ 471 (634)
. .. ..+ .|.... .++.+.+.++++++.+...+...+... ...++.|+|+||+|.+ +++.+++.|+.
T Consensus 71 ~-~~--~~~---~g~~~~---~~~~i~~~~~~~~~~i~~~i~~~~~~~---~~~i~~iil~GGga~l--l~~~l~~~~~~ 136 (161)
T d2fsja1 71 S-HP--VMF---RQKQVG---GPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPG 136 (161)
T ss_dssp T-SC--EEE---TTEEEC---SHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTHHH--HGGGGGGGSTT
T ss_pred h-cc--ccc---ccccch---HHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccEEEEECCHHHH--HHHHHHHHccC
Confidence 1 11 111 222211 246677788888888888887776542 2468999999999986 88999999976
Q ss_pred CcC--CCCChhhHHHHHHHHHHh
Q psy8852 472 TLL--TSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 472 ~~~--~~~~p~~ava~GAa~~a~ 492 (634)
... .+.||..|+|+|--..|.
T Consensus 137 ~~~~~~~~~p~~ana~G~~~~~e 159 (161)
T d2fsja1 137 TLVKIKPEDLQFANALGYRDAAE 159 (161)
T ss_dssp CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred CeeecCCCCccchHHHHHHHHHh
Confidence 543 457999999999887764
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.55 E-value=8.1e-06 Score=77.69 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHHHHhHh
Q psy8852 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 494 (634)
Q Consensus 420 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~~a~~~ 494 (634)
++...+..+...+...+... .+++.|++.||.++.+++++.+++.++.++..+.+|.++.|+|||++|...
T Consensus 186 i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 186 IIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHHH
Confidence 33344444444444444433 246789999999999999999999999999999999999999999999754
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.92 E-value=6.7e-05 Score=63.65 Aligned_cols=159 Identities=18% Similarity=0.272 Sum_probs=87.8
Q ss_pred eEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC
Q psy8852 314 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ 393 (634)
Q Consensus 314 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 393 (634)
..+.++|+||||||.+++.-.+... -++-.| .|+.++..+. ..++... +.-+|.+|+---..
T Consensus 4 ~plaIlDlG~GStDasii~~~g~v~-avhlAG----AG~mVTmlI~----~eLGl~d---------~~lAE~IKkyPlak 65 (202)
T d1nbwa3 4 APLAILDLGAGSTDAAIVNAEGQIT-AVHLAG----AGNMVSLLIK----TELGLED---------LSLAEAIKKYPLAK 65 (202)
T ss_dssp SSEEEEEECSSEEEEEEECSSSCEE-EEEEEC----CHHHHHHHHH----HHHTCSC---------HHHHHHHHHSCEEE
T ss_pred CceEEEEcCCCccchhhccCCCcEE-EEEecC----CchhhHHHHH----HHhCCCc---------HHHHHHHhhcchhh
Confidence 3478999999999999987655432 332232 3566655554 3444332 24567777642111
Q ss_pred cceEEEEEec-----------------------CCc--eeEEEEeHHHHHHHHHHHHHH-HHHHHHHHHHHcCC--CcCC
Q psy8852 394 SSVKLNVKLS-----------------------DKK--IVNITIDMKQFFTITQHLVNR-TILLSSKALMDANL--TIKD 445 (634)
Q Consensus 394 ~~~~i~i~~~-----------------------~g~--~~~~~itr~~~e~~~~~~~~~-~~~~i~~~l~~~~~--~~~~ 445 (634)
-+..+.+... ++. .++-.++-+++..+=...-++ +..-+.++|+.... +..+
T Consensus 66 VEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~vsp~gnir~ 145 (202)
T d1nbwa3 66 VESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSPGGSIRD 145 (202)
T ss_dssp ECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTT
T ss_pred hccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhhcCCCCCcCC
Confidence 1100111100 111 112234444544433332222 12334455554432 2357
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhc-------cC-CcCCCCChhhHHHHHHHHH
Q psy8852 446 INNVILVGGSTRMKHIHEGVSNFF-------KT-TLLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 446 i~~ViLvGG~s~~p~v~~~l~~~f-------~~-~~~~~~~p~~ava~GAa~~ 490 (634)
|..|+|+||++.-.-|-+++.+.+ |. ++.-..-|..|||.|.++.
T Consensus 146 i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 146 IAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp CCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 899999999998777777777766 21 3344567899999999875
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.86 E-value=1.5e-05 Score=74.32 Aligned_cols=167 Identities=19% Similarity=0.266 Sum_probs=98.0
Q ss_pred EEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC--
Q psy8852 316 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ-- 393 (634)
Q Consensus 316 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-- 393 (634)
-+|+|+|.+.|.++-+. +|.. +.......++||.++++.|.+.+.++.... ...... ...+..|+.+...
T Consensus 4 glVVDiG~~~t~v~PV~--eG~~-l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~-~~~~~~----~~~~~~ke~~~~~~~ 75 (225)
T d2fxua2 4 GIVLDSGDGVTHNVPIY--EGYA-LPHAIMRLDLAGRDLTDYLMKILTERGYSF-VTTAER----EIVRDIKEKLCYVAL 75 (225)
T ss_dssp EEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHHHHHTCCC-CSHHHH----HHHHHHHHHHCCCCS
T ss_pred EEEEEcCCCcEEEEEEE--CCEE-chhceEEEECcHHHHHHHHHHHHhhccCCc-CCHHHH----HHHHHHHHHHhhccc
Confidence 38999999998888543 2321 111222357999999999998887643221 111111 1223333333221
Q ss_pred ------------cceEEEEEecCCceeEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--cCCCCeEE
Q psy8852 394 ------------SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVN---------RTILLSSKALMDANLT--IKDINNVI 450 (634)
Q Consensus 394 ------------~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~---------~~~~~i~~~l~~~~~~--~~~i~~Vi 450 (634)
....-...+.+|..+. +..+.| .+.+.+++ .+.++|.+++..+..+ ..-...|+
T Consensus 76 d~~~e~~~~~~~~~~~~~~~lpdg~~i~--i~~er~-~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIv 152 (225)
T d2fxua2 76 DFENEMATAASSSSLEKSYELPDGQVIT--IGNERF-RCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNV 152 (225)
T ss_dssp SHHHHHHHHHHCSTTCEEEECTTSCEEE--ESTHHH-HHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEE
T ss_pred chhHHHhhcccCcccceeEECCCCCEEE--EchHhc-cccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEE
Confidence 1112233345665444 443333 22332322 3666677777665422 11236899
Q ss_pred EEcCCcCcHHHHHHHHhhcc--------CCcCCCCChhhHHHHHHHHHHhH
Q psy8852 451 LVGGSTRMKHIHEGVSNFFK--------TTLLTSIDPDKAVVFGAAIQANF 493 (634)
Q Consensus 451 LvGG~s~~p~v~~~l~~~f~--------~~~~~~~~p~~ava~GAa~~a~~ 493 (634)
|+||+|.+|.+.++|.+.+. .++..+.++..++=.||+++|..
T Consensus 153 l~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 153 MSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp EESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred EeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 99999999999999987651 23445678889999999999863
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.85 E-value=0.00011 Score=62.05 Aligned_cols=160 Identities=22% Similarity=0.271 Sum_probs=88.6
Q ss_pred eEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC
Q psy8852 314 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ 393 (634)
Q Consensus 314 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 393 (634)
..+.++|+|||+||.|++..++.. .-++-.| .|+.++..+. .+++... ..-+|.+|+---..
T Consensus 4 ~PlAIlDlGaGStDAsii~~~g~v-~a~HlAG----AG~mVTmlI~----seLGl~d---------~~lAE~IKkyPlak 65 (203)
T d2d0oa3 4 RPLAILDLGAGSTDASIINPKGDI-IATHLAG----AGDMVTMIIA----RELGLED---------RYLAEEIKKYPLAK 65 (203)
T ss_dssp SSEEEEEECSSEEEEEEECTTCCE-EEEEEEC----SHHHHHHHHH----HHHTCCC---------HHHHHHHHHSCEEE
T ss_pred CceEEEEcCCCcccHHHhCCCCcE-EEEEecC----cchHhHHHHH----HhhCCCc---------HHHHHHHhhcchhh
Confidence 347899999999999998765533 2333333 3555555543 3444433 24567777642111
Q ss_pred cceEEEEEec-----------------------CCc--eeEEEEeHHHHHHHHHHHHHH-HHHHHHHHHHHcC--CCcCC
Q psy8852 394 SSVKLNVKLS-----------------------DKK--IVNITIDMKQFFTITQHLVNR-TILLSSKALMDAN--LTIKD 445 (634)
Q Consensus 394 ~~~~i~i~~~-----------------------~g~--~~~~~itr~~~e~~~~~~~~~-~~~~i~~~l~~~~--~~~~~ 445 (634)
-+.-+.+... .+. .+.-.++-+++..+=...-++ +..-+.++|+... -+..+
T Consensus 66 VEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~d~lvP~~~~~~~Eki~~vRr~aK~kvfvtNa~RaL~~vsP~gnir~ 145 (203)
T d2d0oa3 66 VESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRD 145 (203)
T ss_dssp ECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGG
T ss_pred hccceEEEecCCceEEecCCCChHHheEEEEecCCceeecCCcccHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCCcCC
Confidence 1100111110 111 111123444444333332222 2233344555432 23457
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhccC--------CcCCCCChhhHHHHHHHHHH
Q psy8852 446 INNVILVGGSTRMKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 446 i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa~~a 491 (634)
|..|+|+||++.---|-+++.+.+.. ++.-..-|..|||.|.++.-
T Consensus 146 i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~y 199 (203)
T d2d0oa3 146 IPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSW 199 (203)
T ss_dssp CCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHH
T ss_pred CCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHHh
Confidence 89999999999988888888887722 33345679999999998754
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=2.4e-05 Score=74.58 Aligned_cols=168 Identities=18% Similarity=0.252 Sum_probs=97.6
Q ss_pred EEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcCC--
Q psy8852 316 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ-- 393 (634)
Q Consensus 316 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-- 393 (634)
=+|+|+|.+.|+++-+. +|.. +.......++||.+++..|.+++.++-.... .... ...++..|+.++..
T Consensus 5 GlVVDiG~~~T~v~PV~--eG~~-l~~~~~~~~~GG~~lt~~L~~~L~~~~~~~~-~~~~----~~~~~~~ke~~~~v~~ 76 (258)
T d1k8ka2 5 GTVIDSGDGVTHVIPVA--EGYV-IGSCIKHIPIAGRDITYFIQQLLRDREVGIP-PEQS----LETAKAVKERYSYVCP 76 (258)
T ss_dssp EEEEEESSSCEEEEEEE--TTEE-CGGGCEEESCSHHHHHHHHHHHHHTTCCCCC-GGGH----HHHHHHHHHHHCCCCS
T ss_pred EEEEEcCCCcEEEEEEE--CCEE-chhheEEEeCcHHHHHHHHHHHHHHcCCCCC-cHHH----HHHHHhHHhhhccccc
Confidence 48999999999988553 2321 1111223679999999999887765321100 0000 11222333332211
Q ss_pred --------------c-ceEEEEE-ecCCceeEEEEeHHHHHHHHHHHH----------HHHHHHHHHHHHHcCCCcCC--
Q psy8852 394 --------------S-SVKLNVK-LSDKKIVNITIDMKQFFTITQHLV----------NRTILLSSKALMDANLTIKD-- 445 (634)
Q Consensus 394 --------------~-~~~i~i~-~~~g~~~~~~itr~~~e~~~~~~~----------~~~~~~i~~~l~~~~~~~~~-- 445 (634)
. ....... ........+.+..+.|. ..+.++ ..+.++|.+++..+..+...
T Consensus 77 d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~er~~-~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L 155 (258)
T d1k8ka2 77 DLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFL-GPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPL 155 (258)
T ss_dssp CHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHH-HHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHH
T ss_pred chHHHHHhhcccccccccccccccccCCCCeEEecCcccee-ccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHH
Confidence 1 1122222 22334556677666653 222211 23677888888877654332
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhhcc------------------------CCcCCCCChhhHHHHHHHHHHh
Q psy8852 446 INNVILVGGSTRMKHIHEGVSNFFK------------------------TTLLTSIDPDKAVVFGAAIQAN 492 (634)
Q Consensus 446 i~~ViLvGG~s~~p~v~~~l~~~f~------------------------~~~~~~~~p~~ava~GAa~~a~ 492 (634)
...|+|+||+|.+|++.++|.+.+. .++..+.++..++=.||+++|.
T Consensus 156 ~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 156 YKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp HHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred HhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 3789999999999999998865541 1223345677888999999875
|
| >d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Open three-helical up-and-down bundle superfamily: HSC20 (HSCB), C-terminal oligomerisation domain family: HSC20 (HSCB), C-terminal oligomerisation domain domain: HSC20 (HSCB), C-terminal oligomerisation domain species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=1.4e-05 Score=63.11 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=29.7
Q ss_pred CCccccccCCCHHHHHHHHHHHHHHHHHhhcchhhhH
Q psy8852 79 DLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKF 115 (634)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~e~~e~~~~~~~~~~~~~~ 115 (634)
++..++++..||+|||+||||||+|+++.+..+...+
T Consensus 2 d~~~E~~T~~DpeFLMeqME~RE~lee~~~~~d~~~l 38 (95)
T d1fpoa2 2 DLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARL 38 (95)
T ss_dssp CTTCSSSCCSCHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CccchhhhcCCHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 3456778999999999999999999999765544433
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.24 E-value=0.0005 Score=58.41 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=84.5
Q ss_pred EEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCC---------cEEecHhHHhhhccCCCchhhhhhhhcCC
Q psy8852 136 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG---------KIYVGKKAKITQNIDPKNTISSIKRFIAR 206 (634)
Q Consensus 136 vGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~~lg~ 206 (634)
|-||+|+.++++++..+..|.++ +||++...+.. ...+|.++...... .. +
T Consensus 2 vViD~Gs~~~k~G~age~~P~~~--------~ps~~g~~~~~~~~~~~~~~~~~igd~~~~~~~~---~~-------~-- 61 (140)
T d2fxua1 2 LVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI---LT-------L-- 61 (140)
T ss_dssp EEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHTTS---EE-------E--
T ss_pred EEEECCCCeEEEeeCCCCCcceE--------eccceeeecccccccCccccceeeChhHhhcccc---cc-------c--
Confidence 67999999999999777666554 56666554321 14455555321100 00 0
Q ss_pred CCCCcccCCCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCC--CcCcEEEEeCCCCCHHHHHHHHHH-
Q psy8852 207 DLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNN--RIFGAVITVPAYFNDIQRQFTKNA- 283 (634)
Q Consensus 207 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~--~~~~~viTVPa~~~~~qr~~l~~a- 283 (634)
..| ...+.+.-.+....++.++... .++. .-..+++|-|.......|+.+.+.
T Consensus 62 --------~~p-------------~~~g~v~dwd~~e~~~~~~~~~---~l~~~~~~~pvlltE~~~~~~~~r~~~~Eil 117 (140)
T d2fxua1 62 --------KYP-------------IEHGIITNWDDMEKIWHHTFYN---ELRVAPEEHPTLLTEAPLNPKANREKMTQIM 117 (140)
T ss_dssp --------ECS-------------EETTEECCHHHHHHHHHHHHHT---TSCCCGGGSCEEEEECTTCCHHHHHHHHHHH
T ss_pred --------cCc-------------CcCCcccCHHHHHHHHHHhhhh---hcccCCCCCcceeeccCCCCHHHHHHHHHHh
Confidence 011 1234556667777777777642 2333 234699999999999999998775
Q ss_pred HHHcCCceeeeecchhHHHHHhh
Q psy8852 284 AKLAGLNVLRLLNEPTSAAIAYK 306 (634)
Q Consensus 284 a~~aGl~~~~li~Ep~AAa~~y~ 306 (634)
.+..+++.+.+...|..++++++
T Consensus 118 FE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 118 FETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHTTCCSEEEEEEHHHHHHHHTT
T ss_pred hccCCCCEEEEEhhHHhHhhcCC
Confidence 66679999999999999998764
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.23 E-value=0.00013 Score=65.84 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=80.4
Q ss_pred EEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHH---------HH
Q psy8852 317 AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK--LSYKDVNILMIKS---------RE 385 (634)
Q Consensus 317 lV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~--~~~~~~~~L~~~~---------e~ 385 (634)
||+|+|.+.|.++-+- +|.. +.......++||.++++.|.+.+.+.-.... .+......+...+ +.
T Consensus 2 lVVDiG~~~T~v~PV~--dG~~-l~~a~~~~~igG~~lt~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~e~ 78 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--EGFS-LPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQ 78 (190)
T ss_dssp CEEEECSSCEEEECEE--TTEE-CSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHH
T ss_pred EEEEcCCCcEEEEEeE--CCEE-cccceEEEeccHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhhhhhhcccHHHHH
Confidence 6999999999888442 2221 1111223579999999998887765322111 1111111111110 11
Q ss_pred HHHHhcCCcceEEEEEecCCceeEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCcC--CCCeEEEEcC
Q psy8852 386 IKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVN---------RTILLSSKALMDANLTIK--DINNVILVGG 454 (634)
Q Consensus 386 ~K~~Ls~~~~~~i~i~~~~g~~~~~~itr~~~e~~~~~~~~---------~~~~~i~~~l~~~~~~~~--~i~~ViLvGG 454 (634)
.+...+... .....+.+|..+ .+..+.|. +.+.+++ .+.++|.+++.++..+.. -...|+|+||
T Consensus 79 ~~~~~~~~~--~~~~~lpdg~~i--~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG 153 (190)
T d1k8kb1 79 KLALETTVL--VESYTLPDGRII--KVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGG 153 (190)
T ss_dssp HHHHHCSTT--CEEEECTTSCEE--EECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESG
T ss_pred Hhhhcccce--eeeeecCCCcEE--EEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEEEECc
Confidence 111111112 223344555544 44555443 2233332 267788888888765422 2378999999
Q ss_pred CcCcHHHHHHHHhhc
Q psy8852 455 STRMKHIHEGVSNFF 469 (634)
Q Consensus 455 ~s~~p~v~~~l~~~f 469 (634)
+|.+|++.++|...+
T Consensus 154 ~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 154 STMYPGLPSRLEREL 168 (190)
T ss_dssp GGCSTTHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHH
Confidence 999999999998765
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.99 E-value=0.0015 Score=56.51 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=85.4
Q ss_pred EEEEEeCCceEEEEEEECCeeEEEecCCCCccccEEEEEecCCcEEecHhHHhhhccCCCchhhhhhhhcCCCCCCcccC
Q psy8852 135 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN 214 (634)
Q Consensus 135 vvGID~GTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~ 214 (634)
.|-||+|+.++++++..+..|..+ +||+|+...+ ..+|........... .....++|....+
T Consensus 5 avViD~GS~~~KaG~age~~P~~i--------~Ps~vg~~~~--~~~~~~~~~~~~~~~----~~~~~~ig~e~~~---- 66 (158)
T d1k8ka1 5 ACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKES--AKVGDQAQRRVMKGV----DDLDFFIGDEAIE---- 66 (158)
T ss_dssp CEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-------------CCCTT----GGGCEEEGGGGTS----
T ss_pred cEEEECCCCeEEEEECCCCCCCEE--------eccceeeccc--ccccCchhcccccCC----CccceecChhhhh----
Confidence 488999999999999766666544 6888876433 222332221111000 0000111211000
Q ss_pred CCCeEEecCCCceEEEecCcccCHHhHHHHHHHHHHHHHHHHhCC--CcCcEEEEeCCCCCHHHHHHHHH-HHHHcCCce
Q psy8852 215 SFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNN--RIFGAVITVPAYFNDIQRQFTKN-AAKLAGLNV 291 (634)
Q Consensus 215 ~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~--~~~~~viTVPa~~~~~qr~~l~~-aa~~aGl~~ 291 (634)
+..+.+ ......+.+.-.+.+..++.++... .+.. .-..+++|-|...+..+|+.+-+ +.+..+++.
T Consensus 67 ~~~~~~-------~~pi~~G~i~dwd~~e~l~~~~~~~---~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa 136 (158)
T d1k8ka1 67 KPTYAT-------KWPIRHGIVEDWDLMERFMEQVIFK---YLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPG 136 (158)
T ss_dssp CTTSEE-------ECCEETTEESCHHHHHHHHHHHHHT---TTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSE
T ss_pred CCCccc-------cccccCCeEecHHHHHHHHHHHHHH---hcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCE
Confidence 000010 0112334566677777777766532 2332 34579999999999999998877 466779999
Q ss_pred eeeecchhHHHHHhhhcc
Q psy8852 292 LRLLNEPTSAAIAYKLDK 309 (634)
Q Consensus 292 ~~li~Ep~AAa~~y~~~~ 309 (634)
+.+...|..++++.+...
T Consensus 137 ~~~~~~~~Lslya~g~~~ 154 (158)
T d1k8ka1 137 LYIAVQAVLALAASWTSR 154 (158)
T ss_dssp EEEEEHHHHHHHHGGGST
T ss_pred EEEEchhhhhheeCCCCC
Confidence 999999999999887654
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=96.44 E-value=0.0031 Score=58.34 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=60.6
Q ss_pred EEeHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCCcCCCCChhhHHHHHHHH
Q psy8852 411 TIDMKQFFTIT-QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAI 489 (634)
Q Consensus 411 ~itr~~~e~~~-~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~ava~GAa~ 489 (634)
.-+|.++-+.+ +.+.-.+...++..-+..+. .++.|.+.||.++++.+.+.+.+.+|.++....++ ++.++|||+
T Consensus 115 ~~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~---~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~-e~~alGaA~ 190 (235)
T d1r59o2 115 GTTKEDFVRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANL-ETTALGAAY 190 (235)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCC-CTTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEecCcchhCHHHHhhhhhccceeeeecccc-chHHHHHHH
Confidence 34666665433 33444444444443334454 37899999999999999999999999998776555 578999999
Q ss_pred HHhHhcCCCC
Q psy8852 490 QANFLSGNRG 499 (634)
Q Consensus 490 ~a~~~~~~~~ 499 (634)
.|+.-.+...
T Consensus 191 la~~~~G~~~ 200 (235)
T d1r59o2 191 LAGLAVGFWK 200 (235)
T ss_dssp HHHHHHTSSS
T ss_pred HHHHHcCCCC
Confidence 9987766543
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=96.04 E-value=0.059 Score=42.99 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=39.6
Q ss_pred CHHhHHHHHHHHHHHHHHHHhCCC---cC--cEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeecchhHHHHH
Q psy8852 237 SPIEISAQIFITLKKIAENAVNNR---IF--GAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 304 (634)
Q Consensus 237 ~~~~v~~~~L~~l~~~a~~~~~~~---~~--~~viTVPa~~~~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~ 304 (634)
.++++...+...+.+.... .+.. +. .+.+.+|.......+..+.+.. -.+..+.+.++..||++.
T Consensus 41 ~~~~~~~~i~~~i~~~~~~-ag~~~~~~~~~~~~~g~aG~~~~~~~~~l~~~~--~~~~~v~v~nDa~~A~~g 110 (114)
T d1zc6a1 41 GIAKSWQAVLSTLEAAFQQ-AGLPAAPASACAIGLGLSGVHNRQWAGEFESQA--PGFARLSLATDGYTTLLG 110 (114)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TTCCCCCGGGEEEEEEESCCCTTSHHHHHHHTC--CCCSEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-cCCChhhhceeEEEEEecCCCcHHHHHHHHHhC--CCCCeEEEECHHHHHHHH
Confidence 3455566665555554443 2322 22 3667888777766666665432 234578899999999886
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.016 Score=52.16 Aligned_cols=161 Identities=15% Similarity=0.165 Sum_probs=82.8
Q ss_pred eEEEEEEeCCCeEEEEEEEEe-CCeEEEEEEcCCCCccchhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH-----
Q psy8852 314 GIFAVYDLGGGTFDISILKFK-NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIK----- 387 (634)
Q Consensus 314 ~~vlV~D~GggT~dvsv~~~~-~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~L~~~~e~~K----- 387 (634)
-.+|++.+|+|| +++.+. .+.++.++... +||..||.... ++. + ..+.....+|-+.-...+
T Consensus 27 fP~llv~iGsGt---sii~v~~~~~~~~iggT~---~gGgtf~gla~-lLl---g--~~~~~eI~klA~~G~~~~~dl~~ 94 (212)
T d2i7na2 27 YPMLLVNMGSGV---SILAVYSKDNYKRVTGTS---LGGGTFLGLCC-LLT---G--CETFEEALEMAAKGDSTNVDKLV 94 (212)
T ss_dssp CSEEEEEESSSE---EEEEEEETTEEEEEEEES---CSHHHHHHHHH-HHH---C--CCSHHHHHHHHHHCCGGGTSEEH
T ss_pred CCEEEEECCCCe---EEEEEecCCceEEecCCc---ccHHHHHHHHH-Hhc---C--CCCHHHHHHHHhcCCccccCccC
Confidence 358999999995 355554 57888887664 99999986553 221 1 111112211111100000
Q ss_pred -HH------hcCCcceEEEEEec--CCceeEEEEeHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcC
Q psy8852 388 -EL------LSYQSSVKLNVKLS--DKKIVNITIDMKQFFTITQH-LVNRTILLSSKALMDANLTIKDINNVILVGGSTR 457 (634)
Q Consensus 388 -~~------Ls~~~~~~i~i~~~--~g~~~~~~itr~~~e~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 457 (634)
.. ++.-....+...+- ......-.++++++..-+.. +.+-+...+..+.+.. .++.|+++||.+.
T Consensus 95 ~di~~~~~s~sgL~t~~~a~~fgk~~~~~~~~~~~~~DiaaS~q~~v~~~l~~~a~~aa~~~-----~~k~iv~~Ggv~a 169 (212)
T d2i7na2 95 KDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNE-----NIDRVVFVGNFLR 169 (212)
T ss_dssp HHHHSSCBGGGTBCTTSEEETTTTTTSHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCCEEEESGGGC
T ss_pred CCcCCCCCCcccCCHHHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEECcHhh
Confidence 00 00011111111000 00001112344454433333 3333444444544544 4679999999887
Q ss_pred cHHHHHHHHh----hc---cCCcCCCCChhhHHHHHHHHHH
Q psy8852 458 MKHIHEGVSN----FF---KTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 458 ~p~v~~~l~~----~f---~~~~~~~~~p~~ava~GAa~~a 491 (634)
...+++.+.+ ++ +.+++.+.|...+.|.||.+..
T Consensus 170 N~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 170 INMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp SSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 7767766543 33 3456667888999999998864
|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.81 E-value=0.0041 Score=54.01 Aligned_cols=43 Identities=19% Similarity=0.052 Sum_probs=32.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHc--------CC------ceeeeecchhHHHHHh
Q psy8852 263 GAVITVPAYFNDIQRQFTKNAAKLA--------GL------NVLRLLNEPTSAAIAY 305 (634)
Q Consensus 263 ~~viTVPa~~~~~qr~~l~~aa~~a--------Gl------~~~~li~Ep~AAa~~y 305 (634)
.+|+..|..+...+++++++....- |. ..+.+++||.+|.++.
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~~~ 159 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYL 159 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHHHH
Confidence 3788899998888999999877532 11 3567899999988843
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=95.63 E-value=0.17 Score=44.47 Aligned_cols=32 Identities=13% Similarity=-0.124 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCceeeeecchhHHHHHh
Q psy8852 274 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 305 (634)
Q Consensus 274 ~~qr~~l~~aa~~aGl~~~~li~Ep~AAa~~y 305 (634)
....+.+.++++.+|++...++.+|.|+|.+.
T Consensus 161 ~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~ 192 (193)
T d1e4ft1 161 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGV 192 (193)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhEEEhHHhhhhcc
Confidence 67889999999999999999999999999764
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=1.7 Score=40.60 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=42.3
Q ss_pred CCCcCcEEEEeCCCCCHHHH--------HHHHHHHHHcCCceeeeecchhHHHHHhhhc-----------cCccceEEEE
Q psy8852 258 NNRIFGAVITVPAYFNDIQR--------QFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD-----------KNIFEGIFAV 318 (634)
Q Consensus 258 ~~~~~~~viTVPa~~~~~qr--------~~l~~aa~~aGl~~~~li~Ep~AAa~~y~~~-----------~~~~~~~vlV 318 (634)
+.++..+.|++|.-.+.... -......+..+...+.+.++..++++..... .......+++
T Consensus 51 ~~~~~~igI~~pG~vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 130 (319)
T d1sz2a1 51 KVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAV 130 (319)
T ss_dssp CCCCCEEEEEESSCCCSSEECCSSSCCCEEHHHHHHHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEE
T ss_pred CCCcceEEEEcccCCCCCcccccccccccChHHHHHhhcccceeecceeeeeehhhhhhhhhhHHhhCcccCCCcceEEE
Confidence 44667788888754331110 0122333344566677777777766643221 1114456677
Q ss_pred EEeCCCeEEEEEEEEeCC
Q psy8852 319 YDLGGGTFDISILKFKNG 336 (634)
Q Consensus 319 ~D~GggT~dvsv~~~~~~ 336 (634)
+-.|.|..-+.......+
T Consensus 131 i~~g~G~g~~~~~~~~~g 148 (319)
T d1sz2a1 131 YGAGTGLGVAHLVHVDKR 148 (319)
T ss_dssp EEESSSEEEEEEEEETTE
T ss_pred EcccccceEEEEecccCC
Confidence 777777665555555443
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.54 Score=37.30 Aligned_cols=45 Identities=2% Similarity=-0.076 Sum_probs=33.7
Q ss_pred CCcCcEEEEeCCCCCHHHHHHHHHHHHHc--CC-ceeeeecchhHHHH
Q psy8852 259 NRIFGAVITVPAYFNDIQRQFTKNAAKLA--GL-NVLRLLNEPTSAAI 303 (634)
Q Consensus 259 ~~~~~~viTVPa~~~~~qr~~l~~aa~~a--Gl-~~~~li~Ep~AAa~ 303 (634)
.++..+++.++..=.+..++.+.++.+.. ++ ..+.+.++..+|..
T Consensus 66 ~~i~~i~~GlAG~~~~~~~~~l~~~l~~~~~~~~~~v~v~nDa~~Al~ 113 (117)
T d2ch5a2 66 VPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIA 113 (117)
T ss_dssp CCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHH
T ss_pred ccccEEEEEeeccCcchhHHHHHHHHHHHCCCCCceEEEeccHHHHHh
Confidence 35678999999877888888888888665 55 35677777776654
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=92.06 E-value=0.18 Score=46.17 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=38.6
Q ss_pred CCCeEEEEcCC-cCcHHHHHHHHhhc---cCCcCCCCChhhHHHHHHHHHH
Q psy8852 445 DINNVILVGGS-TRMKHIHEGVSNFF---KTTLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 445 ~i~~ViLvGG~-s~~p~v~~~l~~~f---~~~~~~~~~p~~ava~GAa~~a 491 (634)
++..|++.||. +..|.+++.+++++ +.++..+.++..+-|+||++++
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 35689999984 67999999999988 3456667889999999999865
|
| >d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=91.15 E-value=0.75 Score=38.57 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=18.1
Q ss_pred eEEEEEeCCceEEEEEEE-CCee
Q psy8852 134 VSIGIDFGTTNSLVAIVR-NNIP 155 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~-~g~~ 155 (634)
++||||.|.+++++++.. +|..
T Consensus 1 m~I~iD~Gy~nvK~a~~~~~g~~ 23 (157)
T d2zgya1 1 MLVFIDDGSTNIKLQWQESDGTI 23 (157)
T ss_dssp CEEEEEECSSEEEEEEECSSSCE
T ss_pred CEEEEecCCCcEEEEEecCCCcE
Confidence 479999999999999876 4554
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=87.68 E-value=0.41 Score=41.34 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=29.3
Q ss_pred ceEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHH
Q psy8852 313 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 358 (634)
Q Consensus 313 ~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 358 (634)
++.++|+|+|||+|.+++++ ++.+.. ....++|.-.+.+.+
T Consensus 2 e~~~lviDIGGGStEli~~~--~~~i~~---~~Sl~lG~vrl~e~f 42 (180)
T d1t6ca2 2 EGEVCVVDQGGGSTEYVFGK--GYKVRE---VISLPIGIVNLTETF 42 (180)
T ss_dssp CSEEEEEEEETTEEEEEEEE--TTEEEE---EEEECCCHHHHHHHH
T ss_pred CCCEEEEEeCCChHhhEEee--CCceee---EEEeecceEEeeccc
Confidence 46899999999999999764 443322 223678888777665
|
| >d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Probab=83.73 E-value=0.68 Score=39.58 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=27.7
Q ss_pred eEEEEEEeCCCeEEEEEEEEeCCeEEEEEEcCCCCccchhHHHHH
Q psy8852 314 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 358 (634)
Q Consensus 314 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~id~~l 358 (634)
++.||+|+|||+|.+++++ ++.+.-. ...++|.-.+.+.+
T Consensus 2 gr~Lv~DIGGGStEl~~~~--~~~~~~~---~Sl~lG~vrl~e~~ 41 (177)
T d1u6za3 2 GRKLVIDIGGGSTELVIGE--NFEPILV---ESRRMGCVSFAQLY 41 (177)
T ss_dssp SCEEEEEECSSCEEEEEEE--TTEEEEE---EEESCCHHHHHHHH
T ss_pred CCEEEEEeCCChhheEEEE--CCcEeEE---EEeccceEEeeccc
Confidence 4579999999999999763 4443222 23688887766555
|
| >d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylmannosamine kinase NanK species: Escherichia coli [TaxId: 562]
Probab=82.31 E-value=1 Score=38.09 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccC-------CcCCCCChhhHHHHHHHHHH
Q psy8852 419 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-------TLLTSIDPDKAVVFGAAIQA 491 (634)
Q Consensus 419 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~-------~~~~~~~p~~ava~GAa~~a 491 (634)
++++...+.+...+...+.-. +++.|+|-||.+..+.+.+.+++.+.. ++..+.-.+++.+.|||++|
T Consensus 93 ~i~~~~~~~la~~l~~l~~~l-----dP~~IvlgG~i~~~~~~~~~i~~~~~~~~~~~~~~I~~s~l~~~a~~~GAA~lA 167 (170)
T d2aa4a2 93 QLIHRSARTLARLIADIKATT-----DCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLA 167 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----CCSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhheE-----CCCEEEEeChhhhhhhHHHHHHHHHHhccCCCCCeEEecCCCCcHHHHHHHHHH
Confidence 344444444444444444443 477899988877666566666665532 23334455688999999998
Q ss_pred h
Q psy8852 492 N 492 (634)
Q Consensus 492 ~ 492 (634)
.
T Consensus 168 ~ 168 (170)
T d2aa4a2 168 Q 168 (170)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Hypothetical protein SP2142 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.63 E-value=3.3 Score=34.73 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhc-------cC-----CcCCCCChhhHHHHHH
Q psy8852 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF-------KT-----TLLTSIDPDKAVVFGA 487 (634)
Q Consensus 420 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-------~~-----~~~~~~~p~~ava~GA 487 (634)
+++...+.+...+...+.-. +++.|+|-||.+..|.+-+.+.+.+ .. .+..+.....+.++||
T Consensus 90 ~~~~~~~~la~~i~~~i~~l-----dp~~IvlGG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~s~~~~~a~l~GA 164 (175)
T d2gupa2 90 AIERMNRNLAQGLLNIQYLI-----DPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGA 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----CCSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-----cCceEEECCcccchHHHHHHHHHHHHHHHhhccccCCCCEEEECCCCCcHHHHHH
Confidence 33344444444444444433 4789999999887765444443332 11 1223344467899999
Q ss_pred HHHHhHh
Q psy8852 488 AIQANFL 494 (634)
Q Consensus 488 a~~a~~~ 494 (634)
|+++...
T Consensus 165 a~l~l~~ 171 (175)
T d2gupa2 165 LVNWLQE 171 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
|
| >d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hypothetical protein PG1100 species: Porphyromonas gingivalis [TaxId: 837]
Probab=81.60 E-value=4.5 Score=30.96 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.4
Q ss_pred EEEEEeCCCeEEEEEEE
Q psy8852 316 FAVYDLGGGTFDISILK 332 (634)
Q Consensus 316 vlV~D~GggT~dvsv~~ 332 (634)
+|++|-||+.|+..++.
T Consensus 2 ilivDgGgTKT~~vl~d 18 (107)
T d1zbsa2 2 ILIGDSGSTKTDWCIAK 18 (107)
T ss_dssp EEEEEECSSEEEEEEEE
T ss_pred EEEEEeccccEEEEEEC
Confidence 68999999999986655
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=81.53 E-value=3.8 Score=31.62 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=20.8
Q ss_pred ceEEEEEEeCCCeEEEEEEEEeCCeE
Q psy8852 313 EGIFAVYDLGGGTFDISILKFKNGVF 338 (634)
Q Consensus 313 ~~~vlV~D~GggT~dvsv~~~~~~~~ 338 (634)
-+++|-+|.||+.+.+.++......+
T Consensus 3 m~y~lGID~GGT~tk~~l~d~~G~il 28 (114)
T d1zc6a1 3 IRYLIGVDGGGTGTRIRLHASDGTPL 28 (114)
T ss_dssp CCEEEEEEECSSCEEEEEEETTCCEE
T ss_pred ccEEEEEEcCcceEEEEEEcCCCCEE
Confidence 35789999999999999987655443
|
| >d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=80.86 E-value=2 Score=36.02 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcC-cHHHHHHHHhhccC--------CcCCCCChhhHHHHHHH
Q psy8852 418 FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTR-MKHIHEGVSNFFKT--------TLLTSIDPDKAVVFGAA 488 (634)
Q Consensus 418 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~-~p~v~~~l~~~f~~--------~~~~~~~p~~ava~GAa 488 (634)
.++++.....+...+...+.-. +++.|+|-||.+. .+.+.+.+++.+.. ++..+...+.+.++|||
T Consensus 81 ~~~~~~~~~~la~~l~n~~~~~-----dPe~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa 155 (169)
T d2hoea2 81 KEYFDDIARYFSIGLLNLIHLF-----GISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAA 155 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----CCCEEEEeChHHhchHHHHHHHHHHHHHhcCCCCCCEEEECCCCCCHHHHHHH
Confidence 3444555555555555554443 4778999999886 46666666555421 22334556789999999
Q ss_pred HHHh
Q psy8852 489 IQAN 492 (634)
Q Consensus 489 ~~a~ 492 (634)
+++.
T Consensus 156 ~~~~ 159 (169)
T d2hoea2 156 VHAL 159 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
|
| >d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative regulator protein YcfX species: Salmonella typhimurium [TaxId: 90371]
Probab=80.36 E-value=1.2 Score=38.08 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCcCcHHHHHHHHhhccCC---------cCCCCChhhHHHHHHHHH
Q psy8852 420 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT---------LLTSIDPDKAVVFGAAIQ 490 (634)
Q Consensus 420 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~---------~~~~~~p~~ava~GAa~~ 490 (634)
+++...+.+...+-..+.-. +++.|+|-||.+..+.+.+.+.+.+... +..+.-...+.++|||++
T Consensus 108 i~~~~~~~la~~i~nl~~~l-----dPe~IvlGG~i~~~~~~~~~l~~~~~~~~~~~~~~~~I~~s~lg~~a~~~GAA~l 182 (186)
T d2ap1a1 108 HVERYLDLLAVCLGNILTIV-----DPDLLVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARHGDAGGMRGAAFL 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----CCSEEEEESGGGGSTHHHHSSGGGSGGGSCTTCCCCEEEECSCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHc-----CcCEEEECCchhhhHHHHHHHHHHHHHHhcCcCCCCEEEECCCCChHHHHHHHHH
Confidence 33344444444444444433 4779999999998887777676665321 222344567999999987
Q ss_pred Hh
Q psy8852 491 AN 492 (634)
Q Consensus 491 a~ 492 (634)
+.
T Consensus 183 al 184 (186)
T d2ap1a1 183 HL 184 (186)
T ss_dssp TS
T ss_pred hh
Confidence 63
|
| >d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative regulator protein YcfX species: Salmonella typhimurium [TaxId: 90371]
Probab=80.34 E-value=0.7 Score=36.33 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.2
Q ss_pred eEEEEEeCCceEEEEEEE-CCe
Q psy8852 134 VSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 134 ~vvGID~GTt~s~va~~~-~g~ 154 (634)
+++|||+|.|++.+++.+ +|+
T Consensus 1 MyiGiDiGgT~i~~~l~d~~g~ 22 (117)
T d2ap1a2 1 MYYGFDIGGTKIALGVFDSTRR 22 (117)
T ss_dssp EEEEEEECSSEEEEEEEETTCC
T ss_pred CEEEEEECcceEEEEEEeCCCC
Confidence 469999999999999988 555
|
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=80.02 E-value=0.22 Score=45.77 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=18.8
Q ss_pred ceEEEEEeCCceEEEEEEE-CCe
Q psy8852 133 CVSIGIDFGTTNSLVAIVR-NNI 154 (634)
Q Consensus 133 ~~vvGID~GTt~s~va~~~-~g~ 154 (634)
.+++|||+|||.+++++++ +|+
T Consensus 1 nyvlgiDiGTtsvKa~l~D~~g~ 23 (252)
T d1r59o1 1 NYVMAIDQGTTSSRAIIFDRNGK 23 (252)
T ss_dssp CEEEEEBCCSSBCBCCEECSSSC
T ss_pred CEEEEEEecccceeeeEEeCCCC
Confidence 3789999999999999987 454
|