Psyllid ID: psy8865

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------75
MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ
ccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccEEEccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHccccccccccccccccccccHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccEEEEHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccEEEEccccccEEEcHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEcccccccHHHccccccccccccHHHHHcccccHHHHHHccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccHHHHHHcHHHHHHHccccccccccEccHHHHHHHHEEEEcccEEEcHHHHHHHHHHHcccccHcHHHHHHHHHHHHHcccccccccHHccccccccccccEEEEEccccHHHHHHHHHHHHHHHHcccccccccccEEccccEEEcccccccccEEEEEEEcccEEEEccccccccEEEEEEccccHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHccccEEEEcccccccccccccEEEEcccccHHHHHccccccEEEEcHHHHccHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccEHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHcccccccEEcccccccHHHHcccccccccccccEEEEEEcccEEEEEcHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHcccEEEEccccccHHHHHHHHHHHHcccEEEHEEccHHHcHHHHccccHHHcccccccccccccHccHHHccccHcccccccccccHHHHcc
MEKDPVYSQVTARLLMYCIQKEVfgkeikqidipiKYKEYFSKFINKgidnkllnpklAEFNLSLLsnallperdlqFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGlslnesnreKCAIKFYNLLSSfnfmcstptlfnsgtirsqlsscylstvpddLYGIFESIKENALLSKYagglgndwtqvrslgspikgtngrsqgvipFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKntgddrrrthdmniAIWVPDLFMKRVIKKStwtlfspydvpdlhnkfgkeFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFEtghpwitfkdacnirspqqhvgiihssnlcteitlntskneigvcnlgsinltlhmkngkldpikLKKTIRIAMRMLDNVIDINYYAVKKAkysnlrhrpvglgimgfqdclhimkipysskeAIKFADQSMEMICYYAYYASTelaeekgryssydgslwdqgilpqdsLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKfgmrnsncvaiaptatisniigvsasieptyrnlhiksnlsgeFTEINRYLVKELKKKGLWDESMIANLKYfdgnlsqisriPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIyisnksgkkldETYKLAWLRGLKTTYYLRSISAnyakksnfemgidsvnldEISIKGYNKNLQEIKNNKKclinseindvnecescq
MEKDPVYSQVTARLLMYCIQKEVfgkeikqidiPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAvnqggkrkGAICAYLETWHMDIEEFIELRkntgddrrrthdmniaiwvpdlfMKRVIKKSTWtlfspydvpdLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLtlhmkngkldpikLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSkylkvnmseslnwkKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIksnlsgeftEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIyisnksgkkldeTYKLAWLRGLKTTYYLRSISAnyakksnfeMGIDSVNLDEISIKGYNKNLQEIKNNkkclinseindvnecescq
MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ
******YSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEK*RGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEI**********
MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNF**********************************EINDVNECESCQ
MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ
MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEM**********************************N*VNEC**CQ
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MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDEISxxxxxxxxxxxxxxxxxxxxxEINDVNECESCQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query749 2.2.26 [Sep-21-2011]
O848341047 Ribonucleoside-diphosphat yes N/A 0.934 0.668 0.588 0.0
Q9PL931047 Ribonucleoside-diphosphat yes N/A 0.934 0.668 0.579 0.0
Q9Z6S51044 Ribonucleoside-diphosphat yes N/A 0.990 0.710 0.551 0.0
Q9ZLF9788 Ribonucleoside-diphosphat yes N/A 0.875 0.832 0.413 1e-149
P55982788 Ribonucleoside-diphosphat yes N/A 0.875 0.832 0.412 1e-148
P36602811 Ribonucleoside-diphosphat yes N/A 0.937 0.865 0.381 1e-142
P23921792 Ribonucleoside-diphosphat yes N/A 0.882 0.834 0.401 1e-141
P07742792 Ribonucleoside-diphosphat yes N/A 0.882 0.834 0.401 1e-141
Q5R919792 Ribonucleoside-diphosphat yes N/A 0.882 0.834 0.400 1e-140
Q9SJ20816 Ribonucleoside-diphosphat yes N/A 0.950 0.872 0.376 1e-140
>sp|O84834|RIR1_CHLTR Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=nrdA PE=3 SV=2 Back     alignment and function desciption
 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/702 (58%), Positives = 528/702 (75%), Gaps = 2/702 (0%)

Query: 1    MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
            +EK+P Y+ V A LL+  + KE  GK     D+   ++++F ++I +G D   LN +L  
Sbjct: 303  IEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAHRDHFKRYIAEG-DTYRLNAELKH 361

Query: 61   -FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESN 119
             F+L  L++A+   RDLQF+Y+G++ LYDRYF H EG R+E PQ F+MR+AMGL+LNE +
Sbjct: 362  LFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVAMGLALNEQD 421

Query: 120  REKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLS 179
            +   AI FYNLLS+F +  +TPTLFNSG   SQLSSCYLSTV D+L  I++ I +NA+LS
Sbjct: 422  KTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVNIYKVIADNAMLS 481

Query: 180  KYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLET 239
            K+AGG+GNDWT +R+ G+ IKGTNGRSQGVIPF+KV ND AVAVNQGGKRKGA+C YLE 
Sbjct: 482  KWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGGKRKGAVCVYLEV 541

Query: 240  WHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKF 299
            WH+D E+F+ELRKNTGD+RRR HD+NIA W+PDLF KR+ +K TWTLFSP DVP LH+ +
Sbjct: 542  WHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFSPDDVPGLHDAY 601

Query: 300  GKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQ 359
            G+EFE  Y  YE +   G+I+LFKK+ A  LWRK+LSMLFETGHPW+TFKD  NIRS Q 
Sbjct: 602  GEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTFKDPSNIRSAQD 661

Query: 360  HVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDN 419
            H G++  SNLCTEI LN S+ E  VCNLGSINL  H+    LD  KL +TI IA+RMLDN
Sbjct: 662  HKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLSETISIAVRMLDN 721

Query: 420  VIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYA 479
            VIDIN+Y  K+AK +N  HR +GLG+MGFQD L+ + I Y+S+EA++FAD S E+I YYA
Sbjct: 722  VIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEFADYSSELISYYA 781

Query: 480  YYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNR 539
              AS  LA+E+G YSSY GS WD+G+LP D+++LL   RG   L+++ S   +W+ +R+ 
Sbjct: 782  IQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDTSSRKDWEPIRSL 841

Query: 540  IKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKK 599
            +K+ GMR+   +AIAPTATISNIIGV+ SIEPTY++L +KSNLSGEFT  N YL+++LKK
Sbjct: 842  VKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKK 901

Query: 600  KGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQS 659
             G+WD  M+ +LKYFDG+L +I RIPD L+ I+ TAFEI P WIIE  S RQKWID  QS
Sbjct: 902  LGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQKWIDMGQS 961

Query: 660  LNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKS 701
            LN+Y++   GKKL   Y  AW +GLKTTYYLRS SA   +KS
Sbjct: 962  LNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKS 1003
Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)
EC: 1EC: .EC: 1EC: 7EC: .EC: 4EC: .EC: 1
>sp|Q9PL93|RIR1_CHLMU Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia muridarum (strain MoPn / Nigg) GN=nrdA PE=3 SV=1 Back     alignment and function description
>sp|Q9Z6S5|RIR1_CHLPN Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia pneumoniae GN=nrdA PE=3 SV=1 Back     alignment and function description
>sp|Q9ZLF9|RIR1_HELPJ Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter pylori (strain J99) GN=nrdA PE=3 SV=1 Back     alignment and function description
>sp|P55982|RIR1_HELPY Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=nrdA PE=3 SV=1 Back     alignment and function description
>sp|P36602|RIR1_SCHPO Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc22 PE=1 SV=2 Back     alignment and function description
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1 Back     alignment and function description
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii GN=RRM1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query749
134095933 966 ribonucleotide-diphosphate reductase sub 0.994 0.771 0.719 0.0
152979866 963 ribonucleotide-diphosphate reductase sub 0.995 0.774 0.718 0.0
399018405 989 ribonucleoside-diphosphate reductase, al 0.950 0.719 0.745 0.0
340789060 974 ribonucleotide reductase of class Ia (ae 0.997 0.766 0.718 0.0
329902474 969 Ribonucleotide reductase of class Ia (ae 0.997 0.770 0.698 0.0
398835460 996 ribonucleoside-diphosphate reductase, al 0.941 0.707 0.737 0.0
409408950 994 ribonucleoside reductase large subunit [ 0.967 0.729 0.720 0.0
300309721 994 ribonucleoside reductase large subunit [ 0.950 0.716 0.732 0.0
415955521 871 ribonucleoside reductase large subunit, 0.967 0.832 0.717 0.0
445499258 975 ribonucleoside-diphosphate reductase sub 0.993 0.763 0.681 0.0
>gi|134095933|ref|YP_001101008.1| ribonucleotide-diphosphate reductase subunit alpha [Herminiimonas arsenicoxydans] gi|133739836|emb|CAL62887.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
 Score = 1173 bits (3035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/752 (71%), Positives = 640/752 (85%), Gaps = 7/752 (0%)

Query: 1   MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAE 60
           MEKDP YS VTARLLM+ I+KEVFG+E+ Q + P +Y  YF++FI KGI  +LL+ KL E
Sbjct: 219 MEKDPAYSTVTARLLMHTIRKEVFGREVAQANAPAEYLVYFAEFIKKGIAAELLDAKLGE 278

Query: 61  FNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNR 120
           F+L  L++AL PERDLQF YLGL+ LYDRYFLHI   RIEMPQ F+MR+AMGL+LNE+NR
Sbjct: 279 FDLKKLADALKPERDLQFGYLGLQTLYDRYFLHIADQRIEMPQAFYMRVAMGLALNEANR 338

Query: 121 EKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENALLSK 180
           E+ AI+FYNLLSSF+FM STPTLFNSGT RSQLSSCYL+TV DDL GI+++IKENALL+K
Sbjct: 339 EERAIEFYNLLSSFDFMSSTPTLFNSGTQRSQLSSCYLTTVADDLGGIYDAIKENALLAK 398

Query: 181 YAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYLETW 240
           YAGGLGNDWT VRSLG+ IKGTNGRSQGV+PFLKVVND AVAVNQGGKRKGA+CAYLETW
Sbjct: 399 YAGGLGNDWTPVRSLGAHIKGTNGRSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETW 458

Query: 241 HMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFG 300
           HMDIEEF++LRKNTGDDRRRTHDMN A W+PDLFMKRV++K  WTLFSP D PDLH+K G
Sbjct: 459 HMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVG 518

Query: 301 KEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQH 360
           K FEE+Y  YE +   G++KLFKKI AL LWRK+LSMLFETGHPWITFKD CNIRSPQQH
Sbjct: 519 KAFEEAYTGYEAKAARGELKLFKKIQALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQH 578

Query: 361 VGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNV 420
           VG++HSSNLCTEITLNT+++EI VCNLGS+N+  HMK+GKLD +KL+KTIR AMRMLDNV
Sbjct: 579 VGVVHSSNLCTEITLNTNESEIAVCNLGSVNMPAHMKDGKLDHVKLQKTIRTAMRMLDNV 638

Query: 421 IDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEMICYYAY 480
           IDINYYAV KA+ SNLRHRPVG+GIMGFQDCLH+M+IPY+S +A++FAD SME +CYYAY
Sbjct: 639 IDINYYAVNKARDSNLRHRPVGMGIMGFQDCLHMMRIPYASNDAVQFADNSMEAVCYYAY 698

Query: 481 YASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRI 540
           YASTELAEE+GRYSSY GSLWD+GILPQDSLKLL  ERG+KYL+ + SE+ +W  LR RI
Sbjct: 699 YASTELAEERGRYSSYKGSLWDRGILPQDSLKLLADERGAKYLEADYSETFDWTPLRARI 758

Query: 541 KKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKK 600
           K+FGMRNSNCVAIAPTATISNIIGVSA IEPTY+NL++KSNLSGEFTEIN YLV++LK +
Sbjct: 759 KEFGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKAR 818

Query: 601 GLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWIDQSQSL 660
           GLWDE MI++LKYFDG+L++I RIP DLR IYATAFE+ P+W++EA S RQKWIDQ+QSL
Sbjct: 819 GLWDEVMISDLKYFDGSLAKIDRIPQDLRDIYATAFEVEPSWLVEAASRRQKWIDQAQSL 878

Query: 661 NIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG-IDSVNLDEISIKG 719
           NIY+S  SGKKLD+TYKLAWLRGLKTTYYLR++ A + +KS  + G +++V+    S  G
Sbjct: 879 NIYMSGASGKKLDDTYKLAWLRGLKTTYYLRTMGATHTEKSTSKTGALNAVD----SGGG 934

Query: 720 YNKNLQEIK--NNKKCLINSEINDVNECESCQ 749
            +   Q     +   C++        ECE+CQ
Sbjct: 935 SSTAAQSAAETDGPACILRPGDAGFEECEACQ 966

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|152979866|ref|YP_001354669.1| ribonucleotide-diphosphate reductase subunit alpha [Janthinobacterium sp. Marseille] gi|151279943|gb|ABR88353.1| ribonucleoside-diphosphate reductase alpha chain [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|399018405|ref|ZP_10720584.1| ribonucleoside-diphosphate reductase, alpha subunit [Herbaspirillum sp. CF444] gi|398101521|gb|EJL91737.1| ribonucleoside-diphosphate reductase, alpha subunit [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|340789060|ref|YP_004754525.1| ribonucleotide reductase of class Ia (aerobic) subunit alpha [Collimonas fungivorans Ter331] gi|340554327|gb|AEK63702.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|329902474|ref|ZP_08273119.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548766|gb|EGF33403.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Oxalobacteraceae bacterium IMCC9480] Back     alignment and taxonomy information
>gi|398835460|ref|ZP_10592822.1| ribonucleoside-diphosphate reductase, alpha subunit [Herbaspirillum sp. YR522] gi|398216246|gb|EJN02799.1| ribonucleoside-diphosphate reductase, alpha subunit [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|409408950|ref|ZP_11257385.1| ribonucleoside reductase large subunit [Herbaspirillum sp. GW103] gi|386432272|gb|EIJ45100.1| ribonucleoside reductase large subunit [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large subunit [Herbaspirillum seropedicae SmR1] gi|300072506|gb|ADJ61905.1| ribonucleoside reductase (large chain) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|415955521|ref|ZP_11557459.1| ribonucleoside reductase large subunit, partial [Herbaspirillum frisingense GSF30] gi|407757023|gb|EKF67094.1| ribonucleoside reductase large subunit, partial [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|445499258|ref|ZP_21466113.1| ribonucleoside-diphosphate reductase subunit alpha [Janthinobacterium sp. HH01] gi|444789253|gb|ELX10801.1| ribonucleoside-diphosphate reductase subunit alpha [Janthinobacterium sp. HH01] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query749
UNIPROTKB|Q886B0970 nrdA "Ribonucleoside-diphospha 0.941 0.726 0.650 2e-255
UNIPROTKB|Q607W9969 nrdA "Ribonucleoside-diphospha 0.990 0.765 0.613 4.1e-255
UNIPROTKB|Q48FF6970 nrdA "Ribonucleoside-diphospha 0.941 0.726 0.647 8.5e-255
TIGR_CMR|CBU_1553941 CBU_1553 "ribonucleoside-dipho 0.933 0.742 0.636 1.5e-250
UNIPROTKB|Q5HXD4789 nrdA "Ribonucleoside-diphospha 0.485 0.461 0.485 1.3e-143
TIGR_CMR|CJE_0024789 CJE_0024 "ribonucleoside-dipho 0.485 0.461 0.485 1.3e-143
POMBASE|SPAC1F7.05811 cdc22 "ribonucleoside reductas 0.942 0.870 0.384 3.2e-129
UNIPROTKB|O61065803 RNR1 "Ribonucleoside-diphospha 0.897 0.836 0.398 4.8e-126
CGD|CAL0001524854 RNR1 [Candida albicans (taxid: 0.958 0.840 0.380 1.6e-125
UNIPROTKB|P50648806 RNR1 "Ribonucleoside-diphospha 0.811 0.754 0.430 1.6e-125
UNIPROTKB|Q886B0 nrdA "Ribonucleoside-diphosphate reductase" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
 Score = 2459 (870.7 bits), Expect = 2.0e-255, P = 2.0e-255
 Identities = 463/712 (65%), Positives = 569/712 (79%)

Query:     1 MEKDPVYSQVTARLLMYCIQKEVFG-----KEIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
             +E++P YS VTARLLM  ++ E  G           ++   Y +    ++  GI  +LLN
Sbjct:   212 VEREPNYSFVTARLLMDTLRAEGLGFLGVADSATHHEMADLYAKALPAYVATGIKFELLN 271

Query:    56 PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
             P LAEF+L  L  A+  ERD QF YLGL+ LYDRYF+H +G+R E+PQ FFMR+AMGL++
Sbjct:   272 PVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAI 331

Query:   116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
              E  RE  AI+FYNLLSSF++M STPTLFN+GT+R QLSSCYL+TVPDDL GI+ +I +N
Sbjct:   332 EEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDN 391

Query:   176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
             A+LSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct:   392 AMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 451

Query:   236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
             YLETWHMDIEEFIELRKNTGDDRRRTHDMN A W+PDLFMKRV     WTLFSP +VPDL
Sbjct:   452 YLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDL 511

Query:   296 HNKFGKEFEESYILYENQTKL-GKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNI 354
             H+  GK F+E Y  YE  T+  GK+KLFK I A  LWRK+LSMLFETGHPW+TFKD CN+
Sbjct:   512 HDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNL 571

Query:   355 RSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNGKLDPIKLKKTIRIAM 414
             RSPQQHVG++HSSNLCTEITLNT+K+EI VCNLGSINL  H+ NGKLD  KLK+TI +A+
Sbjct:   572 RSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTIDVAV 631

Query:   415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
             RMLDNVIDINYY+V +A+ SNLRHRPVGLGIMGFQD L++  IPY S  A++FAD SME 
Sbjct:   632 RMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADSSMEA 691

Query:   475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
             + YYA  AS +LA+E+G Y ++ GSLW QGILP DS ++L ++RG KY+ V++ ESL+W 
Sbjct:   692 VSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDVDLKESLDWA 751

Query:   535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
              +R R++K G+RNSN +AIAPTATI+NI GVS SIEPTY+NL++KSNLSGEFT IN YLV
Sbjct:   752 PVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLV 810

Query:   595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
             ++LK + LWD  MI +LKY+DG++ QI RIP +L+++YATAFE+   WI++A S RQKWI
Sbjct:   811 RDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWI 870

Query:   655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG 706
             DQ+QSLN+YI+  SGKKLD TY++AW RGLKTTYYLR+++A   +KS    G
Sbjct:   871 DQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVNTG 922
GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=ISS
GO:0009265 "2'-deoxyribonucleotide biosynthetic process" evidence=ISS
UNIPROTKB|Q607W9 nrdA "Ribonucleoside-diphosphate reductase" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q48FF6 nrdA "Ribonucleoside-diphosphate reductase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1553 CBU_1553 "ribonucleoside-diphosphate reductase, alpha subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q5HXD4 nrdA "Ribonucleoside-diphosphate reductase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0024 CJE_0024 "ribonucleoside-diphosphate reductase, alpha subunit" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
POMBASE|SPAC1F7.05 cdc22 "ribonucleoside reductase large subunit Cdc22" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|O61065 RNR1 "Ribonucleoside-diphosphate reductase large chain" [Cryptosporidium parvum (taxid:5807)] Back     alignment and assigned GO terms
CGD|CAL0001524 RNR1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|P50648 RNR1 "Ribonucleoside-diphosphate reductase large subunit" [Plasmodium falciparum Dd2 (taxid:57267)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P79732RIR1_DANRE1, ., 1, 7, ., 4, ., 10.38110.95590.9017yesN/A
Q8SR37RIR1_ENCCU1, ., 1, 7, ., 4, ., 10.35930.87980.8580yesN/A
Q54Q71RIR1_DICDI1, ., 1, 7, ., 4, ., 10.40150.80500.6931yesN/A
Q9PL93RIR1_CHLMU1, ., 1, 7, ., 4, ., 10.57970.93450.6685yesN/A
O84834RIR1_CHLTR1, ., 1, 7, ., 4, ., 10.58830.93450.6685yesN/A
P57276RIR1_BUCAI1, ., 1, 7, ., 4, ., 10.30360.84110.8278yesN/A
Q03604RIR1_CAEEL1, ., 1, 7, ., 4, ., 10.42050.82510.7842yesN/A
O66503RIR1_AQUAE1, ., 1, 7, ., 4, ., 10.36930.85580.8002yesN/A
P48591RIR1_DROME1, ., 1, 7, ., 4, ., 10.38570.95460.8805yesN/A
O61065RIR1_CRYPV1, ., 1, 7, ., 4, ., 10.39400.89710.8368yesN/A
P07742RIR1_MOUSE1, ., 1, 7, ., 4, ., 10.40160.88250.8345yesN/A
P21524RIR1_YEAST1, ., 1, 7, ., 4, ., 10.38120.92920.7837yesN/A
P55982RIR1_HELPY1, ., 1, 7, ., 4, ., 10.41250.87580.8324yesN/A
Q9Z6S5RIR1_CHLPN1, ., 1, 7, ., 4, ., 10.55120.99060.7107yesN/A
P36602RIR1_SCHPO1, ., 1, 7, ., 4, ., 10.38150.93720.8655yesN/A
Q9SJ20RIR1_ARATH1, ., 1, 7, ., 4, ., 10.37670.95060.8725yesN/A
Q89AS4RIR1_BUCBP1, ., 1, 7, ., 4, ., 10.30620.84510.8318yesN/A
P0CH00RIR1B_MYCS21, ., 1, 7, ., 4, ., 10.26110.80500.8351yesN/A
Q9ZLF9RIR1_HELPJ1, ., 1, 7, ., 4, ., 10.41380.87580.8324yesN/A
Q5R919RIR1_PONAB1, ., 1, 7, ., 4, ., 10.40020.88250.8345yesN/A
Q8K9W3RIR1_BUCAP1, ., 1, 7, ., 4, ., 10.31180.84510.8296yesN/A
P23921RIR1_HUMAN1, ., 1, 7, ., 4, ., 10.40160.88250.8345yesN/A
P37426RIR1_SALTY1, ., 1, 7, ., 4, ., 10.29240.83310.8199yesN/A
O83972RIR1_TREPA1, ., 1, 7, ., 4, ., 10.31910.84910.7526yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.4.10.914
3rd Layer1.17.40.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query749
PRK07207965 PRK07207, PRK07207, ribonucleotide-diphosphate red 0.0
PRK123651046 PRK12365, PRK12365, ribonucleotide-diphosphate red 0.0
TIGR02506617 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate r 0.0
pfam02867516 pfam02867, Ribonuc_red_lgC, Ribonucleotide reducta 0.0
cd01679460 cd01679, RNR_I, Class I ribonucleotide reductase 0.0
PRK06539822 PRK06539, PRK06539, ribonucleotide-diphosphate red 0.0
COG0209651 COG0209, NrdA, Ribonucleotide reductase, alpha sub 0.0
PRK08447789 PRK08447, PRK08447, ribonucleotide-diphosphate red 0.0
PLN02437813 PLN02437, PLN02437, ribonucleoside--diphosphate re 0.0
PRK07088764 PRK07088, PRK07088, ribonucleotide-diphosphate red 1e-153
PRK12364842 PRK12364, PRK12364, ribonucleotide-diphosphate red 1e-143
PRK09209761 PRK09209, PRK09209, ribonucleotide-diphosphate red 1e-142
PRK09102601 PRK09102, PRK09102, ribonucleotide-diphosphate red 1e-126
TIGR02504589 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate redu 1e-125
cd02888464 cd02888, RNR_II_dimer, Class II ribonucleotide red 1e-106
PRK08665 752 PRK08665, PRK08665, ribonucleotide-diphosphate red 1e-100
PHA02572753 PHA02572, nrdA, ribonucleoside-diphosphate reducta 2e-90
PRK06406771 PRK06406, PRK06406, ribonucleotide-diphosphate red 2e-88
PRK09103758 PRK09103, PRK09103, ribonucleotide-diphosphate red 2e-76
TIGR04170698 TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate 3e-72
PRK07187721 PRK07187, PRK07187, ribonucleotide-diphosphate red 2e-66
TIGR02510548 TIGR02510, NrdE-prime, ribonucleoside-diphosphate 3e-61
PRK07632699 PRK07632, PRK07632, ribonucleotide-diphosphate red 3e-60
PRK07306720 PRK07306, PRK07306, ribonucleotide-diphosphate red 3e-60
PRK08188714 PRK08188, PRK08188, ribonucleotide-diphosphate red 5e-56
PRK08115858 PRK08115, PRK08115, ribonucleotide-diphosphate red 9e-40
PRK083321740 PRK08332, PRK08332, ribonucleotide-diphosphate red 5e-38
PRK06948595 PRK06948, PRK06948, ribonucleotide reductase-like 4e-35
PRK06556 953 PRK06556, PRK06556, vitamin B12-dependent ribonucl 2e-26
pfam0031779 pfam00317, Ribonuc_red_lgN, Ribonucleotide reducta 9e-24
PRK07562 1220 PRK07562, PRK07562, ribonucleotide-diphosphate red 2e-12
PRK08115858 PRK08115, PRK08115, ribonucleotide-diphosphate red 7e-11
PRK08332 1740 PRK08332, PRK08332, ribonucleotide-diphosphate red 7e-09
PRK08332 1740 PRK08332, PRK08332, ribonucleotide-diphosphate red 3e-04
cd00576401 cd00576, RNR_PFL, Ribonucleotide reductase and Pyr 5e-04
cd00576401 cd00576, RNR_PFL, Ribonucleotide reductase and Pyr 0.001
>gnl|CDD|235966 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information 
 Score = 1478 bits (3829), Expect = 0.0
 Identities = 515/758 (67%), Positives = 617/758 (81%), Gaps = 15/758 (1%)

Query: 1   MEKDPVYSQVTARLLMYCIQKEVFGK-----EIKQIDIPIKYKEYFSKFINKGIDNKLLN 55
           +EK+P YS VTARLL+  +++E  G      E+ Q ++  +Y EYF  FI KGI+ +LL+
Sbjct: 214 IEKEPNYSYVTARLLLDTLRREALGFLGVPEEVTQAEMATRYAEYFPAFIKKGIEAELLD 273

Query: 56  PKLAEFNLSLLSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSL 115
           PKLA+F+L  L  AL PERDLQF YLGL+ LYDRYFLH++G RIE+PQ FFMR+AMGL+L
Sbjct: 274 PKLAQFDLERLGAALDPERDLQFTYLGLQTLYDRYFLHVDGTRIELPQAFFMRVAMGLAL 333

Query: 116 NESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKEN 175
           NE +RE  AI+FYNLLSSF+FM STPTLFNSGT+R QLSSCYL+TVPDDL GI+E+IK+N
Sbjct: 334 NEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTVPDDLDGIYEAIKDN 393

Query: 176 ALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA 235
           ALLSK+AGGLGNDWT VR+LGS IKGTNG+SQGV+PFLKVVND AVAVNQGGKRKGA+CA
Sbjct: 394 ALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 453

Query: 236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDL 295
           YLETWH+DIEEF+ELRKNTGDDRRRTHDMN A W+PDLFMKRV++   WTLFSP +VPDL
Sbjct: 454 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTLFSPSEVPDL 513

Query: 296 HNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIR 355
           H+ FGK FEE+Y  YE +   G+IKLFKKI A+ LWRK+LSMLFETGHPWITFKD CN+R
Sbjct: 514 HDLFGKAFEEAYTAYEAKAARGEIKLFKKIPAVDLWRKMLSMLFETGHPWITFKDPCNLR 573

Query: 356 SPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKNG-KLDPIKLKKTIRIAM 414
           SPQQHVG++HSSNLCTEITLNTS +EI VCNLGS+NL  H+K+G KLD  KLK+T+  AM
Sbjct: 574 SPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLVAHIKDGAKLDHEKLKRTVSTAM 633

Query: 415 RMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM 474
           RMLDNVIDINYYAV KA+ SNLRHRPVGLGIMGFQD L++++IPY+S EA++FAD+SME 
Sbjct: 634 RMLDNVIDINYYAVPKARNSNLRHRPVGLGIMGFQDALYLLRIPYASDEAVEFADRSMEA 693

Query: 475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWK 534
           + YYA +ASTELAEE+GRYSSY+GSLW +GILP DSLKLL + RG  YL+V+ S +L+W 
Sbjct: 694 VSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLAEARG-GYLEVDRSSTLDWD 752

Query: 535 KLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLV 594
            LR RIKK GMRNSNC+AIAPTATISNIIGVS SIEPTY+NL++KSNLSGEFT +N YLV
Sbjct: 753 ALRARIKKHGMRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 812

Query: 595 KELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSVRQKWI 654
           ++LK +GLWDE M+ +LKYFDG+L +I RIP DL+ +YATAFE+ P W++EA S RQKWI
Sbjct: 813 RDLKARGLWDEVMVNDLKYFDGSLQRIDRIPADLKALYATAFEVDPRWLVEAASRRQKWI 872

Query: 655 DQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMG---IDSVN 711
           DQ+QSLN+Y++  SGKKLDETYKLAWLRGLKTTYYLR++ A + +KS    G     S  
Sbjct: 873 DQAQSLNLYMAGASGKKLDETYKLAWLRGLKTTYYLRTLGATHVEKSTVNTGALNAVSSG 932

Query: 712 LDEISIKGYNKNLQEIKNNKKCLINSEINDVNECESCQ 749
                            + K C I     D  +CE+CQ
Sbjct: 933 GGGAGGAAAAAAAPPAADPKACSI-----DDPDCEACQ 965

Length = 965
>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha subunit Back     alignment and domain information
>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel domain Back     alignment and domain information
>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase Back     alignment and domain information
>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|223287 COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|236266 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit Back     alignment and domain information
>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|237077 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|181700 PRK09209, PRK09209, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|233900 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent Back     alignment and domain information
>gnl|CDD|153089 cd02888, RNR_II_dimer, Class II ribonucleotide reductase, dimeric form Back     alignment and domain information
>gnl|CDD|236330 PRK08665, PRK08665, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|222883 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|235796 PRK06406, PRK06406, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|181649 PRK09103, PRK09103, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|211905 TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate reductase, class 1b, alpha subunit Back     alignment and domain information
>gnl|CDD|235952 PRK07187, PRK07187, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|188230 TIGR02510, NrdE-prime, ribonucleoside-diphosphate reductase, alpha chain Back     alignment and domain information
>gnl|CDD|236069 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|180921 PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|236179 PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|180772 PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase; Validated Back     alignment and domain information
>gnl|CDD|215855 pfam00317, Ribonuc_red_lgN, Ribonucleotide reductase, all-alpha domain Back     alignment and domain information
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|153083 cd00576, RNR_PFL, Ribonucleotide reductase and Pyruvate formate lyase Back     alignment and domain information
>gnl|CDD|153083 cd00576, RNR_PFL, Ribonucleotide reductase and Pyruvate formate lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 749
PRK07207965 ribonucleotide-diphosphate reductase subunit alpha 100.0
KOG1112|consensus796 100.0
PRK123651046 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK06539822 ribonucleotide-diphosphate reductase subunit alpha 100.0
PLN02437813 ribonucleoside--diphosphate reductase large subuni 100.0
PRK08447789 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK09209761 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK07088764 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK09103758 ribonucleotide-diphosphate reductase subunit alpha 100.0
PHA02572753 nrdA ribonucleoside-diphosphate reductase subunit 100.0
PRK12364842 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK07187721 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK07632699 ribonucleotide-diphosphate reductase subunit alpha 100.0
TIGR02506617 NrdE_NrdA ribonucleoside-diphosphate reductase, al 100.0
PRK08188714 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK07306720 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK09102601 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK06406771 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK08665 752 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK08115858 ribonucleotide-diphosphate reductase subunit alpha 100.0
TIGR02504586 NrdJ_Z ribonucleoside-diphosphate reductase, adeno 100.0
PRK06948595 ribonucleotide reductase-like protein; Provisional 100.0
TIGR02510571 NrdE-prime ribonucleoside-diphosphate reductase, a 100.0
PRK06556 953 vitamin B12-dependent ribonucleotide reductase; Va 100.0
PF02867538 Ribonuc_red_lgC: Ribonucleotide reductase, barrel 100.0
cd01679460 RNR_I Class I ribonucleotide reductase. Ribonucleo 100.0
cd02888464 RNR_II_dimer Class II ribonucleotide reductase, di 100.0
COG0209651 NrdA Ribonucleotide reductase, alpha subunit [Nucl 100.0
PRK07562 1220 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK083321740 ribonucleotide-diphosphate reductase subunit alpha 100.0
cd01676658 RNR_II_monomer Class II ribonucleotide reductase, 100.0
TIGR02505713 RTPR ribonucleoside-triphosphate reductase, adenos 100.0
cd00576401 RNR_PFL Ribonucleotide reductase and Pyruvate form 100.0
PF0031783 Ribonuc_red_lgN: Ribonucleotide reductase, all-alp 99.79
cd01675555 RNR_III Class III ribonucleotide reductase. Ribonu 97.58
PRK10977509 hypothetical protein; Provisional 97.51
TIGR02487579 NrdD anaerobic ribonucleoside-triphosphate reducta 97.47
PF13597546 NRDD: Anaerobic ribonucleoside-triphosphate reduct 97.32
PRK08270656 anaerobic ribonucleoside triphosphate reductase; P 97.23
PRK14704618 anaerobic ribonucleoside triphosphate reductase; P 97.11
PRK09263711 anaerobic ribonucleoside triphosphate reductase; P 97.02
PRK07111735 anaerobic ribonucleoside triphosphate reductase; P 96.75
PRK08579625 anaerobic ribonucleoside triphosphate reductase; P 96.3
TIGR02827586 RNR_anaer_Bdell anaerobic ribonucleoside-triphosph 95.48
PRK08271623 anaerobic ribonucleoside triphosphate reductase; P 95.22
PF11230487 DUF3029: Protein of unknown function (DUF3029); In 87.5
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information 
Probab=100.00  E-value=1.4e-205  Score=1819.68  Aligned_cols=739  Identities=70%  Similarity=1.169  Sum_probs=701.3

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHcCCC-----cccchhhhhHHHhHHHHHHhhccccccchHHHHhcHHHHHhhcccccc
Q psy8865           1 MEKDPVYSQVTARLLMYCIQKEVFGKE-----IKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEFNLSLLSNALLPERD   75 (749)
Q Consensus         1 ~~~~p~y~~~Aarl~~~~l~k~~~~~~-----~~~~~~~~~y~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD   75 (749)
                      +++||||++|||||++.+|||++.+..     ..+.++...|.+.|..++++|++.++|++++.++++++|+++|+|+||
T Consensus       214 ~~~~p~y~~~Aarl~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd  293 (965)
T PRK07207        214 IEKEPNYSYVTARLLLDTLRREALGFLGVPEEVTQAEMATRYAEYFPAFIKKGIEAELLDPKLAQFDLERLGAALDPERD  293 (965)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHhccchhhhhHHHHHhhHHHHHHHhhHHHh
Confidence            468999999999999999999997631     123445667888899999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccccccc
Q psy8865          76 LQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSS  155 (749)
Q Consensus        76 ~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsS  155 (749)
                      +.|+|+|+++|++|||+|.+|.++|+||+|||||||+||..|.++.+++++||++||+++|+||||||+||||+++||||
T Consensus       294 ~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fy~~ls~~~~~~aTPtl~NaGt~~~qlsS  373 (965)
T PRK07207        294 LQFTYLGLQTLYDRYFLHVDGTRIELPQAFFMRVAMGLALNEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSS  373 (965)
T ss_pred             CCCCHHHHHHHHHhhcccCCCCeeecHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCeecCCHHHhcCCCCCCCeee
Confidence            99999999999999999988899999999999999999999877889999999999999999999999999999999999


Q ss_pred             eeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccceEE
Q psy8865         156 CYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICA  235 (749)
Q Consensus       156 Cfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA~~~  235 (749)
                      |||++|+|||+|||++++++|+++|+|||||+|||+|||+|++|+|++|+|+|||||||+||+++.+|+|||+||||+|+
T Consensus       374 Cfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~lR~~Gs~I~g~~g~ssGvvpflk~~n~~~~~v~QgG~R~GA~~v  453 (965)
T PRK07207        374 CYLTTVPDDLDGIYEAIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA  453 (965)
T ss_pred             eEeCCCcccHHHHHHHHHHHHHHHhcCCeeeecccccCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHcCCcCccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHhhh
Q psy8865         236 YLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTK  315 (749)
Q Consensus       236 yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~~~  315 (749)
                      ||++|||||++||++|+|+|++++|++++|+||||||+|||||++|++|+||+|+++|+|+++||++|+++|++||+...
T Consensus       454 yL~~wH~DI~eFL~lk~~~gde~~r~~~l~~av~ipD~FM~rv~~d~~w~Lf~P~~~~~L~~~yG~~f~~~Y~~~e~~~~  533 (965)
T PRK07207        454 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTLFSPSEVPDLHDLFGKAFEEAYTAYEAKAA  533 (965)
T ss_pred             EecCCCccHHHHHHHhhccCchhhHhhcCchhhccCHHHHHHHHcCCCEEEecCcccccHHhhhhhHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccchhh
Q psy8865         316 LGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLH  395 (749)
Q Consensus       316 ~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~~~  395 (749)
                      +|+++.+++|+||+||++|++++||||+|||+|+|+||+++|++|.|+|++||||+||+|+++++|++|||||||||++|
T Consensus       534 ~g~~~~~~~v~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~SNlCtEI~l~~~~~e~avCNLgSINL~~~  613 (965)
T PRK07207        534 RGEIKLFKKIPAVDLWRKMLSMLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLVAH  613 (965)
T ss_pred             cCCcceeeEeeHHHHHHHHHHHHHHhCCCeeehhHHHHhcCCcccCCeEeecCCCcceeecCCCcceeeeeccceeHHHH
Confidence            88877789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccC-CCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy8865         396 MKNG-KLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSMEM  474 (749)
Q Consensus       396 v~~g-~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~e~  474 (749)
                      |+++ .||+++|+++|++||||||||||+|+||+|+++++|+++|+||||+|||||+|+++||||+|+||++|+++|||.
T Consensus       614 v~~~~~~D~~~l~~~v~~avr~LDnVID~n~yp~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~  693 (965)
T PRK07207        614 IKDGAKLDHEKLKRTVSTAMRMLDNVIDINYYAVPKARNSNLRHRPVGLGIMGFQDALYLLRIPYASDEAVEFADRSMEA  693 (965)
T ss_pred             hhCCCcCCHHHHHHHHHHHHHhccceeeCCCCcHHHHHHHhhccCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence            9876 799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceeecc
Q psy8865         475 ICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIA  554 (749)
Q Consensus       475 i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~Aia  554 (749)
                      |+|+|++||++||+|+|+||.|++|+|++|++|+|+|..+.+.|+ .|..++.+..+||++||++|++||||||+++|||
T Consensus       694 i~y~A~~aS~eLA~E~G~~~~f~gS~~~~g~~~~d~~~~~~~~r~-~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiA  772 (965)
T PRK07207        694 VSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLAEARG-GYLEVDRSSTLDWDALRARIKKHGMRNSNCMAIA  772 (965)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcChhhcCccchhhhhhhhhhhc-ccccccccchhhHHHHHHHHHHhCccccceeccC
Confidence            999999999999999999999999999999999999998776665 4555555678899999999999999999999999


Q ss_pred             CCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhccc
Q psy8865         555 PTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYAT  634 (749)
Q Consensus       555 PT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~t  634 (749)
                      ||+|||+|+|+|+||||+|+|+|+|++.+|+|+++||+|+++|+++|+|+++|++++++++||||+|+.||+++|.+|+|
T Consensus       773 PT~S~S~i~g~s~giEP~~s~~y~r~~~~g~f~~vn~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~f~t  852 (965)
T PRK07207        773 PTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRIPADLKALYAT  852 (965)
T ss_pred             ChHHHHHHhCCCCccCcCchhhheeeccCCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCCccCCCCCChhHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHcccccccCcceeeeCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccccccccch
Q psy8865         635 AFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKTTYYLRSISANYAKKSNFEMGIDSVNLDE  714 (749)
Q Consensus       635 A~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~YY~rs~~~~~~~~~t~~~~~~~~~~~~  714 (749)
                      ||||+|+|+|+|+|+||||||||||+|||+++++.++|.++|++||++||||+|||||+++++++|+||+.+.    +++
T Consensus       853 A~ei~~~~~I~~~A~rQ~~IDqsqS~nl~~~~~t~~~l~~~y~~Aw~~GlKt~YY~Rs~~~~~~~~~t~~~~~----~~~  928 (965)
T PRK07207        853 AFEVDPRWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLKTTYYLRTLGATHVEKSTVNTGA----LNA  928 (965)
T ss_pred             CccCCHHHHHHHHHHHcCcchhhhcCCcCCCCCCHHHHHHHHHHHHHcCCCeEEEEecccccchhhhcccccc----ccc
Confidence            9999999999999999999999999999999899999999999999999999999999999999999998654    455


Q ss_pred             hcccc--c-----CchhhhhccccccccccccCCCCccccCC
Q psy8865         715 ISIKG--Y-----NKNLQEIKNNKKCLINSEINDVNECESCQ  749 (749)
Q Consensus       715 ~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~c~~c~  749 (749)
                      ++...  +     ++...+.+.|.+|++     ++|+||+||
T Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  965 (965)
T PRK07207        929 VSSGGGGAGGAAAAAAAPPAADPKACSI-----DDPDCEACQ  965 (965)
T ss_pred             cCCCccccccccccccCCCCCCCCcccC-----CCCCCcccC
Confidence            54310  0     001112345789999     899999999

>KOG1112|consensus Back     alignment and domain information
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PLN02437 ribonucleoside--diphosphate reductase large subunit Back     alignment and domain information
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit Back     alignment and domain information
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent Back     alignment and domain information
>PRK06948 ribonucleotide reductase-like protein; Provisional Back     alignment and domain information
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain Back     alignment and domain information
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated Back     alignment and domain information
>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1 Back     alignment and domain information
>cd01679 RNR_I Class I ribonucleotide reductase Back     alignment and domain information
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form Back     alignment and domain information
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form Back     alignment and domain information
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent Back     alignment and domain information
>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase Back     alignment and domain information
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1 Back     alignment and domain information
>cd01675 RNR_III Class III ribonucleotide reductase Back     alignment and domain information
>PRK10977 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase Back     alignment and domain information
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A Back     alignment and domain information
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase Back     alignment and domain information
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query749
3hnc_A792 Crystal Structure Of Human Ribonucleotide Reductase 1e-142
2wgh_A676 Human Ribonucleotide Reductase R1 Subunit (Rrm1) In 1e-142
1zyz_A888 Structures Of Yeast Ribonucloetide Reductase I Leng 1e-134
3tb9_A888 Structure Of Yeast Ribonucleotide Reductase 1 Q288a 1e-134
3s8a_A888 Structure Of Yeast Ribonucleotide Reductase R293a W 1e-134
1rlr_A761 Structure Of Ribonucleotide Reductase Protein R1 Le 8e-65
4r1r_A761 Ribonucleotide Reductase R1 Protein With Substrate, 2e-64
3r1r_A761 Ribonucleotide Reductase R1 Protein With Amppnp Occ 2e-64
2xax_A761 Ribonucleotide Reductase Y730no2y And Y731a Modifie 4e-64
2xap_A761 Ribonucleotide Reductase Y731no2y Modified R1 Subun 4e-64
2xak_A761 Ribonucleotide Reductase Y730no2y Modified R1 Subun 4e-64
6r1r_A761 Ribonucleotide Reductase E441d Mutant R1 Protein Fr 4e-64
2xaw_A761 Ribonucleotide Reductase Y730no2y And Y731f Modifie 4e-64
2xav_A761 Ribonucleotide Reductase Y731no2y And Y730f Modifie 4e-64
1r1r_A761 Ribonucleotide Reductase R1 Protein Mutant Y730f Wi 5e-64
7r1r_A761 Ribonucleotide Reductase E441q Mutant R1 Protein Fr 5e-64
5r1r_A761 Ribonucleotide Reductase E441a Mutant R1 Protein Fr 9e-64
2xay_A761 Ribonucleotide Reductase Y730no2y And C439a Modifie 6e-63
2xaz_A761 Ribonucleotide Reductase Y730no2y And C439s Modifie 7e-63
1xjk_A644 Structural Mechanism Of Allosteric Substrate Specif 1e-56
1xje_A644 Structural Mechanism Of Allosteric Substrate Specif 2e-56
1pem_A714 Ribonucleotide Reductase Protein R1e From Salmonell 2e-55
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp Length = 792 Back     alignment and structure 
Iteration: 1

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/707 (40%), Positives = 422/707 (59%), Gaps = 46/707 (6%)
Query: 3   KDPVYSQVTARLLMYCIQKE---VFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLA 59
           K P Y+ + AR+ +  + KE   VF   +          E    +IN    N   +P +A
Sbjct: 70  KHPDYAILAARIAVSNLHKETKKVFSDVM----------EDLYNYINP--HNGKHSPMVA 117
Query: 60  EFNLSL-------LSNALLPERDLQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMG 112
           +  L +       L++A++ +RD  +NY G K L   Y L I G   E PQ   MR+++G
Sbjct: 118 KSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVG 177
Query: 113 LSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDD-LYGIFES 171
           +   + +    AI+ YNLLS   F  ++PTLFN+GT R QLSSC+L ++ DD + GI+++
Sbjct: 178 IHKEDID---AAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 234
Query: 172 IKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRK 230
           +K+ AL+SK AGG+G   + +R+ GS I GTNG S G++P L+V N+ A  V+QGG KR 
Sbjct: 235 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 294
Query: 231 GAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPY 290
           GA   YLE WH+DI EF++L+KNTG + +R  D+  A+W+PDLFMKRV     W+L  P 
Sbjct: 295 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 354
Query: 291 DVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKD 350
           + P L   +G+EFE+ Y  YE Q ++ K+     + A  LW  I+    ETG P++ +KD
Sbjct: 355 ECPGLDEVWGEEFEKLYASYEKQGRVRKV-----VKAQQLWYAIIESQTETGTPYMLYKD 409
Query: 351 ACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLTLHMKN-GKLDPIKLKKT 409
           +CN +S QQ++G I  SNLCTEI   TSK+E+ VCNL S+ L +++ +    D  KL + 
Sbjct: 410 SCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEV 469
Query: 410 IRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFAD 469
            ++ +R L+ +IDINYY V +A  SN RHRP+G+G+ G  D   +M+ P+ S EA     
Sbjct: 470 TKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNK 529
Query: 470 QSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSE 529
           Q  E I Y A  AS +LA+E+G Y +Y+GS   +GIL  D               V  ++
Sbjct: 530 QIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD------------MWNVTPTD 577
Query: 530 SLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEI 589
             +WK L+ +I K+G+RNS  +A  PTA+ + I+G + SIEP   N++ +  LSGEF  +
Sbjct: 578 LWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 637
Query: 590 NRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEISPNWIIEAGSV 649
           N +L+K+L ++GLW E M   +   +G++  I  IPDDL+++Y T +EIS   +++  + 
Sbjct: 638 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 697
Query: 650 RQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISA 695
           R  +IDQSQSLNI+I+  +  KL   +   W +GLKT  YYLR+  A
Sbjct: 698 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPA 744
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In Complex With Datp And Mg. Length = 676 Back     alignment and structure
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I Length = 888 Back     alignment and structure
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With Amppnp And Cdp Length = 888 Back     alignment and structure
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With Dgtp Length = 888 Back     alignment and structure
>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1 Length = 761 Back     alignment and structure
>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp And Effector Dttp From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying The Activity Site From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution Length = 761 Back     alignment and structure
>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A Reduced Active Site From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp-Adp Complex Length = 644 Back     alignment and structure
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp-Gdp Complex Length = 644 Back     alignment and structure
>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium Length = 714 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query749
2xap_A761 Ribonucleoside-diphosphate reductase 1 subunit alp 0.0
3k8t_A888 Ribonucleoside-diphosphate reductase large chain; 0.0
3hnc_A792 Ribonucleoside-diphosphate reductase large subuni; 0.0
2wgh_A676 Ribonucleoside-diphosphate reductase large subunit 0.0
1peq_A714 Ribonucleoside-diphosphate reductase 2 alpha chain 0.0
3o0q_A644 Ribonucleoside-diphosphate reductase; alpha/beta b 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B Length = 761 Back     alignment and structure
 Score =  936 bits (2422), Expect = 0.0
 Identities = 188/728 (25%), Positives = 306/728 (42%), Gaps = 70/728 (9%)

Query: 2   EKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFINKGIDNKLLNPKLAEF 61
              P Y  + ARL ++ ++K+ +G    Q + P  Y ++  K +  G  +  L     E 
Sbjct: 72  RDAPDYQYLAARLAIFHLRKKAYG----QFEPPALY-DHVVKMVEMGKYDNHLLEDYTEE 126

Query: 62  NLSLLSNALLPERDLQFNYLGLKILYDRYFLH--IEGIRIEMPQFFFMRIAMGLSLNE-- 117
               +   +  +RD+ F+Y  +K L  +Y +   + G   E  QF ++ +A  L  N   
Sbjct: 127 EFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPR 186

Query: 118 SNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSSCYLSTVPDDLYGIFESIKENAL 177
             R +   +FY+ +S+F     TP +    T   Q SSC L    D L  I  +      
Sbjct: 187 ETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVK 246

Query: 178 LSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGAICAYL 237
                 G+G +  ++R+LGSPI+G      G IPF K       + +QGG R GA   + 
Sbjct: 247 YVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFY 306

Query: 238 ETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHN 297
             WH+++E  + L+ N G +  R   M+  + +  L   R++K    TLFSP DVP L++
Sbjct: 307 PMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYD 366

Query: 298 KFGKEFEESYILYENQTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSP 357
            F  + EE   LY    K   I+  +++ A+ L+  ++     TG  +I   D CN  SP
Sbjct: 367 AFFADQEEFERLYTKYEKDDSIR-KQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSP 425

Query: 358 -QQHVGIIHSSNLCTEITLNTS--------KNEIGVCNLGSINLTLHMKNGKLDPIKLKK 408
               +  +  SNLC EI L T           EI +C L + NL         +  +L++
Sbjct: 426 FDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAI-----NNLDELEE 480

Query: 409 TIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFA 468
              +A+R LD ++D   Y +  AK   +  R +G+G++ F   L      YS   A    
Sbjct: 481 LAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLT 540

Query: 469 DQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMS 528
            ++ E I YY   AS ELA+E+G    ++ + + +GILP D+ K             N  
Sbjct: 541 HKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTI------ANEP 594

Query: 529 ESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTE 588
              +W+ LR  IK  G+RNS   A+ P+ T S I   +  IEP    + IK++  G   +
Sbjct: 595 LHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQ 654

Query: 589 INRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIYATAFEI-SPNWIIEAG 647
           +                                    + L   Y   +E+   +  ++  
Sbjct: 655 VVPDY--------------------------------EHLHDAYELLWEMPGNDGYLQLV 682

Query: 648 SVRQKWIDQSQSLNIYISNK-------SGKKLDETYKLAWLRGLKTTYYLRSISANYAKK 700
            + QK+IDQS S N               ++L +    A+  G+KT Y   +       +
Sbjct: 683 GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYXQNTRDGAEDAQ 742

Query: 701 SNFEMGID 708
            +    I 
Sbjct: 743 DDLVPSIQ 750
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Length = 888 Back     alignment and structure
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A* Length = 792 Back     alignment and structure
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens} Length = 676 Back     alignment and structure
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E* Length = 714 Back     alignment and structure
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* Length = 644 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query749
3hnc_A792 Ribonucleoside-diphosphate reductase large subuni; 100.0
3k8t_A888 Ribonucleoside-diphosphate reductase large chain; 100.0
2wgh_A676 Ribonucleoside-diphosphate reductase large subunit 100.0
2xap_A761 Ribonucleoside-diphosphate reductase 1 subunit alp 100.0
3o0q_A644 Ribonucleoside-diphosphate reductase; alpha/beta b 100.0
1peq_A714 Ribonucleoside-diphosphate reductase 2 alpha chain 100.0
1l1l_A739 Ribonucleoside triphosphate reductase; 10-stranded 100.0
1dq3_A454 Endonuclease; PI-PFUI, intein-encoded, hydrolase; 96.45
1h7b_A605 Anaerobic ribonucleotide-triphosphate reductase la 94.6
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-197  Score=1718.22  Aligned_cols=713  Identities=40%  Similarity=0.681  Sum_probs=623.4

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHcCCCcccchhhhhHHHhHHHHH--HhhccccccchHHHHh---cHHHHHhhcccccc
Q psy8865           1 MEKDPVYSQVTARLLMYCIQKEVFGKEIKQIDIPIKYKEYFSKFI--NKGIDNKLLNPKLAEF---NLSLLSNALLPERD   75 (749)
Q Consensus         1 ~~~~p~y~~~Aarl~~~~l~k~~~~~~~~~~~~~~~y~~~~~~~i--~~~~~~~~~~~~~~~~---~~~~l~~~i~~~rD   75 (749)
                      +++||||++|||||++++|||++.+.+.  ..+..     |..++  .+|+..+++++++.+|   |+++|+++|+|+||
T Consensus        68 ~~~~pdy~~~AaRl~~~~l~k~~~~~f~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD  140 (792)
T 3hnc_A           68 TTKHPDYAILAARIAVSNLHKETKKVFS--DVMED-----LYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRD  140 (792)
T ss_dssp             GGTCTHHHHHHHHHHHHHHHHTSCSCHH--HHHHH-----HHSCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHHCCGGGG
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----HHHHHHHhhcccccccChHHHHHHHHHHHHHHHHhChhhh
Confidence            3689999999999999999999986421  11222     33333  4678889999997665   99999999999999


Q ss_pred             CCCChhhHHHHHHhcccccCCeEeecHHHHHHHHHhHhhccccCcHHHHHHHHHHHhcCCccccCccccccCcccccccc
Q psy8865          76 LQFNYLGLKILYDRYFLHIEGIRIEMPQFFFMRIAMGLSLNESNREKCAIKFYNLLSSFNFMCSTPTLFNSGTIRSQLSS  155 (749)
Q Consensus        76 ~~f~y~g~~~l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~~~~atPtl~naGt~~~qlsS  155 (749)
                      +.|+|+|+++|++|||+|.+|+++|+||+||||||++|+..   +.+++++||++||+++|+||||||+||||+++||||
T Consensus       141 ~~f~y~g~~~L~~rYllk~~g~~~E~pq~~~~rVA~~l~~~---~~~~a~~~y~~ls~~~f~~aTPtl~NaGt~~~qlsS  217 (792)
T 3hnc_A          141 FSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKE---DIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSS  217 (792)
T ss_dssp             GGSCHHHHHHHHHHTSCEETTEECCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSEEECHHHHHHTTSSSCCCCC
T ss_pred             cCCChHHHHHHHhccccccCCCeeeCHHHHHHHHHHHhccc---cHHHHHHHHHHHHcCCcccCChhhhcCCCCCCCCCc
Confidence            99999999999999999999999999999999999999975   357999999999999999999999999999999999


Q ss_pred             eeeccC-CCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCC-Ccccce
Q psy8865         156 CYLSTV-PDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGG-KRKGAI  233 (749)
Q Consensus       156 Cfl~~v-~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG-~RrGA~  233 (749)
                      |||+++ +|||+|||++++++|+++|+|||||+|||+|||+|++|+|++|+|||||||||+||+++.+|+||| +||||+
T Consensus       218 CFl~~v~~Dsl~~I~~~~~~~a~isk~GGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~~R~GA~  297 (792)
T 3hnc_A          218 CFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAF  297 (792)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEEECTTSCCTTCEETTTTEECCCSHHHHHHHHHHHHHCCCC------CE
T ss_pred             eeccCCCCccHHHHHHHHHHHHHHHHhCCCceEeeeccCCCCCcccCCCCCCCCchhHHHHHHHHHHHHHhCCCccccce
Confidence            999998 799999999999999999999999999999999999999999999999999999999999999999 699999


Q ss_pred             EEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHHh
Q psy8865         234 CAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQ  313 (749)
Q Consensus       234 ~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~~  313 (749)
                      |+||++|||||++||++|+|+|++++|++++|+||||||+|||||++|++|+||+|+++|+|+++||++|+++|++||+.
T Consensus       298 ~vyL~~wHpDI~eFl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~~v~~d~~w~Lf~P~~~p~L~~~yg~ef~~~Y~~~e~~  377 (792)
T 3hnc_A          298 AIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ  377 (792)
T ss_dssp             EEEECTTBTTHHHHTTSCC---------CCEEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCHHHHHHHHHHHHHT
T ss_pred             EEEecCCCccHHHHHHHhhccCcHhHhHhhCchhheeCHHHHHHHHcCCCEEEeCcccCccHHHHhhhHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             hhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCCCccceEeeeccccccccCCCCCcccccccccccch
Q psy8865         314 TKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQQHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINLT  393 (749)
Q Consensus       314 ~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~~~~g~I~~SNlC~EI~l~~~~~e~avCNL~SINL~  393 (749)
                         |++  +++|+||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+++++.+++++||||||||+
T Consensus       378 ---g~~--~k~v~AreLw~~I~~~~~etG~P~i~f~D~~N~~~~~~~~G~I~~SNlC~EI~~~~~~~e~~vCNLgSiNL~  452 (792)
T 3hnc_A          378 ---GRV--RKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALN  452 (792)
T ss_dssp             ---TCC--SEEEEHHHHHHHHHHHHHHHSCSEEEEHHHHHHTCTTGGGCCCCCCCSSSCCCCCCBTTBCEEECEEEEEGG
T ss_pred             ---CCc--eeEeeHHHHHHHHHHHHHHhCCCeeeehhhHHhcCCCCcCCeEEEecCcccccCCCCCCccceeechhccHH
Confidence               543  699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhc-cCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy8865         394 LHMK-NGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKEAIKFADQSM  472 (749)
Q Consensus       394 ~~v~-~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~ea~~l~~~i~  472 (749)
                      +|++ ++.||+++|+++|+++||+||||||+|.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++||
T Consensus       453 ~~v~~~~~fD~~~l~~~v~~avr~Ld~vID~~~yP~~~~~~~~~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~  532 (792)
T 3hnc_A          453 MYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIF  532 (792)
T ss_dssp             GGBCTTSCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred             HHhcccCCcCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHhchhhhhHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            9997 678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHhCCcccceee
Q psy8865         473 EMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVA  552 (749)
Q Consensus       473 e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~A  552 (749)
                      |+|+|+|++||++||+|+|+||.|++|+|++|++|+|.|.            ..+...+||++||++|++||+|||+++|
T Consensus       533 e~i~~~A~~aS~eLAkE~G~f~~f~~S~~~~G~~~~d~~~------------~~~~~~~dW~~Lr~~i~~~GlRNs~l~A  600 (792)
T 3hnc_A          533 ETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWN------------VTPTDLWDWKVLKEKIAKYGIRNSLLIA  600 (792)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTT------------CCCCTTSCHHHHHHHHHHHCCSCSCCBC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccchhhcc------------CCchhhhhHHHHHHHHHHhccccccccc
Confidence            9999999999999999999999999999999999999874            2334578999999999999999999999


Q ss_pred             ccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccCCChhHHhhc
Q psy8865         553 IAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLRKIY  632 (749)
Q Consensus       553 iaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y  632 (749)
                      ||||||||+|+|+|+||||+|+++|+|++.+|+|.++|++|+++|+++|+|++++++.|...+||||+++.||++++++|
T Consensus       601 iAPTgS~S~i~g~t~gIEP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~e~~~~~i~~~~Gsvq~i~~lp~~~~~~y  680 (792)
T 3hnc_A          601 PMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLY  680 (792)
T ss_dssp             CCCCHHHHHHHTCCCTTCCCSCSEEEEEETTEEEEEECHHHHHHHHHTTCCCHHHHHHHHHTTTCCTTCTTSCHHHHHHT
T ss_pred             cCCcchHHHHcCCCCccCcchhHHHHHHhccCceEeeCHHHHHHHHHcCCCcHHHHHHHHhcCCCcccCcCCCHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHcccccccCcceeeeCCCCHHHHHHHHHHHHHcCCcE-EEEeCCCcccccccccccccccccc
Q psy8865         633 ATAFEISPNWIIEAGSVRQKWIDQSQSLNIYISNKSGKKLDETYKLAWLRGLKT-TYYLRSISANYAKKSNFEMGIDSVN  711 (749)
Q Consensus       633 ~tA~ei~~~~~i~~~a~~Q~~iDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt-~YY~rs~~~~~~~~~t~~~~~~~~~  711 (749)
                      +|||||+|+|||+|+|+||||||||||+|||+++++.++|.++|++||++|||| +||+|++++++++|+|+++..    
T Consensus       681 ~tA~eI~~~~~I~m~A~~Q~~IDqs~S~tl~~~~~t~~~l~~~y~~Awk~GlKt~~YY~Rs~~a~~~~~~t~~~~~----  756 (792)
T 3hnc_A          681 KTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEK----  756 (792)
T ss_dssp             CCTTTSCHHHHHHHHHHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC------------------
T ss_pred             hhHHhCCHHHHHHHHHHHcCcchhhccceeecCCCCHHHHHHHHHHHHHhCCCeEEEEecccchhhhhhhccchhh----
Confidence            999999999999999999999999999999999999999999999999999999 899999999999999999653    


Q ss_pred             cchhcccccC-chhhhhccccccccccccCCCCc-cccCC
Q psy8865         712 LDEISIKGYN-KNLQEIKNNKKCLINSEINDVNE-CESCQ  749 (749)
Q Consensus       712 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-c~~c~  749 (749)
                      ++........ ........+.+||+     ++|+ ||+||
T Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~c~~c~  791 (792)
T 3hnc_A          757 LKDKEKVSKEEEEKERNTAAMVCSL-----ENRDECLMCG  791 (792)
T ss_dssp             ----------------------------------------
T ss_pred             hcccccccccccccccccccccCCC-----CCcccccccC
Confidence            2211110000 00111234678999     5665 99997
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Back     alignment and structure
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens} Back     alignment and structure
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B Back     alignment and structure
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A* Back     alignment and structure
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E* Back     alignment and structure
>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4 Back     alignment and structure
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2 Back     alignment and structure
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 749
d1rlra2525 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide r 1e-131
d1peqa2525 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide r 1e-116
d1l1la_721 c.7.1.4 (A:) B12-dependent (class II) ribonucleoti 9e-45
d1rlra1212 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide r 3e-27
d1peqa1162 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide r 5e-21
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 525 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  396 bits (1018), Expect = e-131
 Identities = 150/564 (26%), Positives = 236/564 (41%), Gaps = 52/564 (9%)

Query: 154 SSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFL 213
           SSC L    D L  I  +            G+G +  ++R+LGSPI+G      G IPF 
Sbjct: 2   SSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFY 61

Query: 214 KVVNDVAVAVNQGGKRKGAICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDL 273
           K       + +QGG R GA   +   WH+++E  + L+ N G +  R   M+  + +  L
Sbjct: 62  KHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKL 121

Query: 274 FMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYENQTKLGKIKLFKKISALYLWRK 333
              R++K    TLFSP DVP L++ F  + EE   LY    K   I+  +++ A+ L+  
Sbjct: 122 MYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIR-KQRVKAVELFSL 180

Query: 334 ILSMLFETGHPWITFKDACNIRSPQ-QHVGIIHSSNLCTEITLNTSKNEIGVCNLGSINL 392
           ++     TG  +I   D CN  SP    +  +  SNLC EI L T          G I L
Sbjct: 181 MMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIAL 240

Query: 393 TLHMK---NGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQ 449
                       +  +L +   +A+R LD ++D   Y +  AK   +  R +G+G++ F 
Sbjct: 241 CTLSAFNLGAINNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFA 300

Query: 450 DCLHIMKIPYSSKEAIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQD 509
             L      YS   A     ++ E I YY   AS ELA+E+G    ++ + + +GILP D
Sbjct: 301 YYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPID 360

Query: 510 SLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKFGMRNSNCVAIAPTATISNIIGVSASI 569
           + K       ++ L  +         LR  IK  G+RNS   A+ P+ T S I   +  I
Sbjct: 361 TYKKDLDTIANEPLHYDWEA------LRESIKTHGLRNSTLSALMPSETSSQISNATNGI 414

Query: 570 EPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISRIPDDLR 629
           EP    + IK++  G   ++                                    + L 
Sbjct: 415 EPPRGYVSIKASKDGILRQVVPD--------------------------------YEHLH 442

Query: 630 KIYATAFEI-SPNWIIEAGSVRQKWIDQSQSLNIYI-------SNKSGKKLDETYKLAWL 681
             Y   +E+   +  ++   + QK+IDQS S N               ++L +    A+ 
Sbjct: 443 DAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYK 502

Query: 682 RGLKTTYYLRSISANYAKKSNFEM 705
            G+KT YY  +        SNF++
Sbjct: 503 FGVKTLYYQNTRDDIDD-LSNFQL 525
>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 525 Back     information, alignment and structure
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]} Length = 721 Back     information, alignment and structure
>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 212 Back     information, alignment and structure
>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 162 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query749
d1rlra2525 R1 subunit of ribonucleotide reductase, C-terminal 100.0
d1peqa2525 R1 subunit of ribonucleotide reductase, C-terminal 100.0
d1l1la_721 B12-dependent (class II) ribonucleotide reductase 100.0
d1rlra1212 R1 subunit of ribonucleotide reductase, N-terminal 100.0
d1peqa1162 R1 subunit of ribonucleotide reductase, N-terminal 99.91
d1hk8a_561 Class III anaerobic ribonucleotide reductase NRDD 93.36
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-129  Score=1115.58  Aligned_cols=502  Identities=30%  Similarity=0.458  Sum_probs=465.1

Q ss_pred             ccceeeccCCCChhhHHHHHHHHHHHHhhcCCcccccccccCCCCCcCCCCCcccCcccHHHHHHHHHHHhhcCCCcccc
Q psy8865         153 LSSCYLSTVPDDLYGIFESIKENALLSKYAGGLGNDWTQVRSLGSPIKGTNGRSQGVIPFLKVVNDVAVAVNQGGKRKGA  232 (749)
Q Consensus       153 lsSCfl~~v~Dsl~~I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~RrGA  232 (749)
                      +|||||+.|+|||+||++++++++.++|.|||||+|+|+|||+|++|+|++|+|+|+|||||+||.++.+|+|||+||||
T Consensus         1 ~ssCfv~~v~Ds~~~I~~~~~~~~~~~k~ggGvG~~~s~lR~~Gs~i~g~~g~ssG~v~f~k~~d~~~~~i~qgg~RrgA   80 (525)
T d1rlra2           1 FSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGA   80 (525)
T ss_dssp             CCCCEEEECCSSHHHHHHHHHHHHHTTTTTCCEEEECCSSCCCSCCSSSSCCCSCCSHHHHHHHHHHHTTTSSSSSSSCC
T ss_pred             CcceecCCCCCCHHHHHHHHHHHHHHHhcCCeEEeeccccCCCCCccCCCCCcCCChhhHHHHHHHHHHHHHcCCccccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeCCccCHHHHHHHhhhcCcccccccccccccccCHHHHHHHhcCCceEEECCCCCCccchhhchHHHHHHHHHHH
Q psy8865         233 ICAYLETWHMDIEEFIELRKNTGDDRRRTHDMNIAIWVPDLFMKRVIKKSTWTLFSPYDVPDLHNKFGKEFEESYILYEN  312 (749)
Q Consensus       233 ~~~yl~~wH~DI~eFl~lK~~~g~~~~r~~~~~~sv~ipD~Fm~rv~~d~~W~Lf~P~~~p~L~d~yg~~Fe~~Y~~ye~  312 (749)
                      +|+||++|||||++||++|++.|++.+|++++|+||||||+||++++++++|+||+|.++|.+++.++..+++.+..|+.
T Consensus        81 ~~~~l~~~HpDI~~Fi~~K~~~g~~~~~~~~~~~~v~i~d~fm~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (525)
T d1rlra2          81 ATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTK  160 (525)
T ss_dssp             EEEEEETTBTTHHHHTTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEEEECTTTSTTHHHHHHHCHHHHHHHHHH
T ss_pred             EEEEEcCCcchHHHHHHhccCcCchhhhhhhccccccCChHHHHHHhhCccceeeeccccccccccchhhHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999987666665555555


Q ss_pred             hhhcCCceeeEEEeHHHHHHHHHHHHHhcCCeEEEecchhhhhCCC-CccceEeeeccccccccCCCC--------Cccc
Q psy8865         313 QTKLGKIKLFKKISALYLWRKILSMLFETGHPWITFKDACNIRSPQ-QHVGIIHSSNLCTEITLNTSK--------NEIG  383 (749)
Q Consensus       313 ~~~~g~~~~~~~v~Ar~L~~~i~~~~~etG~P~i~f~D~~N~~~p~-~~~g~I~~SNlC~EI~l~~~~--------~e~a  383 (749)
                      ......+ ..++|+|++||.+|++++++||+||++|+|++|+++|. .+.|+|++||||+||+||+.+        ++++
T Consensus       161 ~~~~~~~-~~~~v~Arel~~~i~~~~~etG~P~i~f~d~~N~~~~~~~~~~~I~~sNlC~Ei~l~~~~~~~~~~~~~~~~  239 (525)
T d1rlra2         161 YEKDDSI-RKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIA  239 (525)
T ss_dssp             HHHCTTS-CEEEEEHHHHHHHHHHHHHHHSCEEEEEHHHHHHSSSBCTTTSCCCCCCTTSCCCCCCBCCSSTTCTTCBCE
T ss_pred             hhccCcc-ccchHHHHHHHHHHHHhhhccCccceeeeeccccccccccccceeecCCcccccccCCCcccccCCCcccee
Confidence            5444444 47999999999999999999999999999999999995 567899999999999998753        4678


Q ss_pred             ccccccccchhhhccCCCChHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhcCCcccccchHHHHHHHcCCCCCCHH
Q psy8865         384 VCNLGSINLTLHMKNGKLDPIKLKKTIRIAMRMLDNVIDINYYAVKKAKYSNLRHRPVGLGIMGFQDCLHIMKIPYSSKE  463 (749)
Q Consensus       384 vCNL~SINL~~~v~~g~~D~~~l~~~v~~avr~LD~vId~~~yp~~~~~~~n~~~R~IGlGv~Glad~L~~lgi~y~S~e  463 (749)
                      +|||+|+||.++     +||++|+++|+++|||||||||.+.||+|+++++++++|+||||+|||||+|+++||+|+|+|
T Consensus       240 ~~~l~s~n~~~~-----~d~~~l~~~v~~~vr~LD~vid~~~~p~~~~~~~~~~~R~IGLGvmGlad~L~~lgi~Y~S~e  314 (525)
T d1rlra2         240 LCTLSAFNLGAI-----NNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGS  314 (525)
T ss_dssp             ECEEEEEETTSC-----SSGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCCEEEEEECHHHHHHHTTCCSSSST
T ss_pred             eeeccccCcccc-----ccHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhCHH
Confidence            999999999876     689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCchhhHHHHHHHhcccccccCchhhhhHHHHHHHHHHh
Q psy8865         464 AIKFADQSMEMICYYAYYASTELAEEKGRYSSYDGSLWDQGILPQDSLKLLEKERGSKYLKVNMSESLNWKKLRNRIKKF  543 (749)
Q Consensus       464 a~~l~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~G~lp~d~~~~~~~~r~~~~~~~~~~~~~dW~~Lr~~i~~~  543 (749)
                      |++++++|||+|+++|++||++||+|+|+||.|++|+|++|++|+|.+......      .......++|++||+.|++|
T Consensus       315 a~~~~~~i~e~i~~~a~~aS~eLAke~G~~p~f~~s~~~~g~~~~~~~~~~~~~------~~~~~~~~~w~~lr~~i~~~  388 (525)
T d1rlra2         315 ANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT------IANEPLHYDWEALRESIKTH  388 (525)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBGGGGTCCHHHHSCGGGGG------TCCCCCCSCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhccccccccccccccc------ccccccccCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999987543211      12334568999999999999


Q ss_pred             CCcccceeeccCCccccccccccccccccccchhheecCCCcceeecHHHHHHHHHcCCChHHHHhhhhhcCCCcccccC
Q psy8865         544 GMRNSNCVAIAPTATISNIIGVSASIEPTYRNLHIKSNLSGEFTEINRYLVKELKKKGLWDESMIANLKYFDGNLSQISR  623 (749)
Q Consensus       544 G~RNs~l~AiaPT~t~S~i~g~s~gieP~~~~~y~r~~~~G~f~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~i~~  623 (749)
                      |+|||+++|||||+|+|+|+|+|+||||+|+++|.|++..|.+..++|.                               
T Consensus       389 G~RNs~~~aiaPT~s~s~i~~~s~gieP~~~~~~~r~~~~g~~~~~~~~-------------------------------  437 (525)
T d1rlra2         389 GLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPD-------------------------------  437 (525)
T ss_dssp             CCSCSCCBCBCCCSHHHHHTTCCCTTCCCSCSEEEEEETTEEEEEECTT-------------------------------
T ss_pred             CeecchhhhhhcccchhhhcccCCccccccceEEEEEecCceeEeecCC-------------------------------
Confidence            9999999999999999999999999999999999999999988877664                               


Q ss_pred             CChhHHhhcccccCC-CHHHHHHHHHHHcccccccCcceeeeCC-------CCHHHHHHHHHHHHHcCCcEEEEeCCCcc
Q psy8865         624 IPDDLRKIYATAFEI-SPNWIIEAGSVRQKWIDQSQSLNIYISN-------KSGKKLDETYKLAWLRGLKTTYYLRSISA  695 (749)
Q Consensus       624 ip~~~k~~y~tA~ei-~~~~~i~~~a~~Q~~iDqs~S~nl~~~~-------~~~~~l~~~~~~Awk~GlKt~YY~rs~~~  695 (749)
                       +++++.+|+||||| ++++||+|+|++|||||||||+|||+++       .+.++|.++|++|||+||||+||+|||++
T Consensus       438 -~~~l~~~~~ta~ei~~~~~~v~~~A~~Q~~iDqsiS~tln~~~~~~~~~~~~~~~v~~~~~~Awk~GlKT~Yy~~Sr~~  516 (525)
T d1rlra2         438 -YEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDD  516 (525)
T ss_dssp             -HHHHTTTCCCGGGSSCSHHHHHHHHHHHTTCSSCBCCCEEECGGGSGGGCCCHHHHHHHHHHHHHTTCCEECCEEECCC
T ss_pred             -hHHHHHHHHHHHHhcCchHHHHHHHHHhhcccHHHhCccCCCccccCCCCCCHHHHHHHHHHHHHhCCCccCcCcChhh
Confidence             34567899999999 7999999999999999999999999942       47899999999999999999999999988


Q ss_pred             ccc
Q psy8865         696 NYA  698 (749)
Q Consensus       696 ~~~  698 (749)
                      ...
T Consensus       517 ~~~  519 (525)
T d1rlra2         517 IDD  519 (525)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            544
>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure