Psyllid ID: psy8879

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690----
Protein Sequence
MSLIAYLMRDILRDGMSQYCLVLLLTIYSYVTATSSPSTPTSTLPSSPSTPTPWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPLLHCITITNPFPSPPALPLAGPSTPTHSSHYTSLINLSNVLSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVIG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHccccccccEEEccccccccccHHHHcccccccEEcccccccccccccccccccccccEEEccccccccccHHHccccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccHHHccccccccccccHHHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccHHcccccccccEEEEccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEcccccccccccccccccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccccccccHHHHHHHHHcEEEcccccccccccHHccccccccEEEcccccccccccHHHHHHHccccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHcHHHcccEEEcccccccccccHHcccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEcccccccccccHHHHccccccEEEccccccccEEccccccccccccHHHccccccEEEEcccccccccccHHcccHHHHHHHHHHcccccccccHHHcccccccEEEcccccccccccHHHHHHHHHHHcccccccccHHccccccccEEEcccccccccccccccccHHHHHHHHHcccccccccccccccccHcccHHHHHHHcccccccccccHHHHHHHHHHHccccccccccHHHccccccEEEEccccccccccccHccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccc
Coil and Loop (DISEMBL)
MSLIAYLMRDILRDGMSQYCLVLLLTIYSYVtatsspstptstlpsspstptpwscpsikndlcacdlphtlrctanksDLYAISEslrglepdervslldctlsnvtvlpgkflegvTLHGLVissgelknisdgafiglssplqalglpnnllsvvptsalaplapnldrldlshnqlyklentsfkglsslnflDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGlrsvtdldlshnllagplgpstvprlsslKVLSIAHNQFSSVRRGALagldkltslschhnqidvledhsfralstlshldlahNRIVAVSGAslahlsnlttldLSHNFLRALTQDLITPLkslqelrlddndismepeciyvgFNTMDLELIYSGVWRHSTLLIPVMLSLctrssvvtRYRYCVVLIEgsnildqsALVLGCSEILAlvptltsqplsyvTSLRANVTGLGTVQVYVQLWtnydpncllTITLYIDGDVIvqkntncsrpwvslkqlpwspkyqvcatlgefptdkpllhcititnpfpsppalplagpstpthsshyTSLINLSNVLSLCLVLLCVLIVILICVLVRKicrtprnstihhhacfipvaqqeddinrnnsdsrYVKLQATTILLSSLKVLSIAHNQFSSVRRGALagldkltslschhnqidvledhsfsnvig
Flexible Loop (DISEMBL)
MSLIAYLMRDILRDGMSQYCLVLLLTIYSYVTATSSPSTPTSTLPSSPSTPTPWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLqelrlddndisMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPLLHCITITNPFPSPPALPLAGPSTPTHSSHYTSLINLSNVLSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNqidvledhsfsnvig
Low Complexity Region (SEG)
MSLIAYLMRDILRDGMSQYCLVLLLTIYSYVtatsspstptstlpsspstptpwscpsIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPLLHCITITNpfpsppalplagpstpthsshytslinlsnvlslclvllcvlivilicvlvRKICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVIG
Disordered region (IsUnstruct)
**LIAYLMRDILRDGMSQYCLVLLLTIYSYVTA********************WSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPLLHCITITNPF******************HYTSLINLSNVLSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHACFIPVAQQE*********SRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE*********
Disordered Region (DISOPRED)
**LIAYLMRDILRDGMSQYCLVLLLTIYSYVTATSSPS**********STPTPWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPLLHCITITNPFPSPPALPLAGPSTPTHSSHYTSLINLSNVLSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVIG
Disordered Region (DISEMBL)
MSLIAYLMRDILRDGMSQYCLVLLLTIYSYVTA*********************SCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPLLHCITITNPFPSPPALPL*********SHYTSLINLSNVLSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVIG
Disordered Region (DISPRO)
MSLIAYLMRDILRDGMSQYCLVLLLTIYSYVTATSSPSTPTSTLPSSPSTPTPWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPLLHCITITNPFPSPPALPLAGPSTPTHSSHYTSLINLSNVLSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFS*VIG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLIAYLMRDILRDGMSQYCLVLLLTIYSYVTATSSPSTPTSTLPSSPSTPTPWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPLLHCITITNPFPSPPALPLAGPSTPTHSSHYTSLINLSNVLSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNVIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	694	2.2.26 [Sep-21-2011]
P35858	605	Insulin-like growth facto	yes	N/A	0.367	0.421	0.356	3e-23
P35859	603	Insulin-like growth facto	yes	N/A	0.391	0.451	0.316	1e-22
O02833	605	Insulin-like growth facto	N/A	N/A	0.367	0.421	0.356	2e-22
P70389	603	Insulin-like growth facto	yes	N/A	0.397	0.457	0.309	1e-21
Q7Z2Q7	622	Leucine-rich repeat-conta	no	N/A	0.386	0.430	0.327	1e-20
Q8R5M3	578	Leucine-rich repeat-conta	no	N/A	0.378	0.455	0.309	3e-18
Q52KR2	1054	Leucine-rich repeats and	no	N/A	0.383	0.252	0.282	4e-18
Q6P1C6	1117	Leucine-rich repeats and	no	N/A	0.396	0.246	0.287	6e-18
D4A6D8	523	Leucine-rich repeat trans	no	N/A	0.318	0.422	0.32	2e-17
Q80X72	579	Leucine-rich repeat-conta	no	N/A	0.337	0.404	0.325	2e-17

>sp|P35858|ALS_HUMAN Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1

 Score =  110 bits (276), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 128/258 (49%), Gaps = 3/258 (1%)

Query: 112 GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD 171
           G F     L  L +S+  L  + DG F GL S L  L L  N L+V+P +A   L  +L 
Sbjct: 140 GTFAHTPALASLGLSNNRLSRLEDGLFEGLGS-LWDLNLGWNSLAVLPDAAFRGLG-SLR 197

Query: 172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
            L L+ N+L  L+   F GL+ L  LDLS N L  +  +    L  L+ L L  N +   
Sbjct: 198 ELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAV 257

Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291
              A  GL+++  LDLSHN +AG L   T P L  L+VL ++HN  +S+R      L  L
Sbjct: 258 APGAFLGLKALRWLDLSHNRVAGLL-EDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFL 316

Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
             L   HN+I  L + SF  L  L  L L HN++  V   +   L+N+  ++LS N LR 
Sbjct: 317 EELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRN 376

Query: 352 LTQDLITPLKSLQELRLD 369
           L + +   L  L  L L+
Sbjct: 377 LPEQVFRGLGKLHSLHLE 394

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.
Homo sapiens (taxid: 9606)

>sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 140/300 (46%), Gaps = 28/300 (9%)

Query: 100 LDCTLSNVTVLPGKFLEGV-TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
           L+   +++ VLP    +G+  LH LV++  +L  +    F GL   L+ L L  N L  V
Sbjct: 175 LNLGWNSLVVLPDTVFQGLGNLHELVLAGNKLTYLQPALFCGLGE-LRELDLSRNALRSV 233

Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
             +    L P L +L L  N +  +   +F G+ +L +LDLS+N++  L +D    L+ L
Sbjct: 234 KANVFVHL-PRLQKLYLDRNLITAVAPGAFLGMKALRWLDLSHNRVAGLMEDTFPGLLGL 292

Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
            VLRL  N +        + L  + +L L HN +   LG  T   L  L+VL++  NQ +
Sbjct: 293 HVLRLAHNAIASLRPRTFKDLHFLEELQLGHNRIR-QLGERTFEGLGQLEVLTLNDNQIT 351

Query: 279 SVRRGALA------------------------GLDKLTSLSCHHNQIDVLEDHSFRALST 314
            VR GA +                        GLDKL SL   H+ +  +  H+F  LS 
Sbjct: 352 EVRVGAFSGLFNVAVMNLSGNCLRSLPERVFQGLDKLHSLHLEHSCLGHVRLHTFAGLSG 411

Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           L  L L  N I ++   SLA LS L  LDL+ N L  L + L   L  L+ L L  N ++
Sbjct: 412 LRRLFLRDNSISSIEEQSLAGLSELLELDLTTNRLTHLPRQLFQGLGHLEYLLLSYNQLT 471

May have an important role in regulating the access of circulating IGFs to the tissues.

Rattus norvegicus (taxid: 10116)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 128/258 (49%), Gaps = 3/258 (1%)

Query: 112 GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD 171
           G F     L  L +S+  L  + DG F GL + L  L L  N L+V+P +A   L   L 
Sbjct: 140 GTFAYTPALALLGLSNNRLSRLEDGLFEGLGN-LWDLNLGWNSLAVLPDAAFRGLG-GLR 197

Query: 172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
            L L+ N+L  L+   F GL+ L  LDLS N L  +  +  A L  L+ L L  N +   
Sbjct: 198 ELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFAQLPRLQKLYLDRNLIAAV 257

Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291
              A  GL+++  LDLSHN +AG L   T P L  L+VL ++HN  +S+R      L  L
Sbjct: 258 APGAFLGLKALRWLDLSHNRVAGLL-EDTFPGLLGLRVLRLSHNAIASLRPRTFEDLHFL 316

Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
             L   HN+I  L + SF  L  L  L L HN++  V   +   L+N+  ++LS N LR 
Sbjct: 317 EELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKVGAFLGLTNVAVMNLSGNCLRN 376

Query: 352 LTQDLITPLKSLQELRLD 369
           L + +   L  L  L L+
Sbjct: 377 LPEQVFRGLGKLHSLHLE 394

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 140/304 (46%), Gaps = 28/304 (9%)

Query: 100 LDCTLSNVTVLPGKFLEGV-TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
           L+   +++ VLP    +G+  LH LV++  +L  +      GL   L+ L L  N L  V
Sbjct: 175 LNLGWNSLVVLPDTVFQGLGNLHELVLAGNKLTYLQPALLCGLGE-LRELDLSRNALRSV 233

Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
             +    L P L +L L  N +  +   +F G+ +L +LDLS+N++  L +D    L+ L
Sbjct: 234 KANVFIHL-PRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGL 292

Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
            VLRL  N +T       + L  + +L L HN +   LG  T   L  L+VL++  NQ  
Sbjct: 293 HVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIR-QLGEKTFEGLGQLEVLTLNDNQIH 351

Query: 279 SVRRGA------------------------LAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
            V+ GA                          GL +L SL   H+ +  +  H+F  LS 
Sbjct: 352 EVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGRLHSLHLEHSCLGRIRLHTFAGLSG 411

Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           L  L L  N I ++   SLA LS L  LDL+ N L  L + L   L  L+ L L +N ++
Sbjct: 412 LRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLTHLPRQLFQGLGQLEYLLLSNNQLT 471

Query: 375 MEPE 378
           M  E
Sbjct: 472 MLSE 475

May have an important role in regulating the access of circulating IGFs to the tissues.

Mus musculus (taxid: 10090)

>sp|Q7Z2Q7|LRR70_HUMAN Leucine-rich repeat-containing protein 70 OS=Homo sapiens GN=LRRC70 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 140/275 (50%), Gaps = 7/275 (2%)

Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPN-NLLSVV 158
           ++C    ++ +P  F E      L ++   +  I++    GL S L AL L N N+L V 
Sbjct: 44  INCRNLGLSSIPKNFPESTVF--LYLTGNNISYINESELTGLHS-LVALYLDNSNILYVY 100

Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
           P  A   L  +L  L L++N + +L+   FKGL +L  L L YN++  + +     LV++
Sbjct: 101 P-KAFVQLR-HLYFLFLNNNFIKRLDPGIFKGLLNLRNLYLQYNQVSFVPRGVFNDLVSV 158

Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
           + L LQ NRLTV       G+ ++  LDLS+N +   +  S    L +L  L +  N  +
Sbjct: 159 QYLNLQRNRLTVLGSGTFVGMVALRILDLSNNNIL-RISESGFQHLENLACLYLGSNNLT 217

Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
            V   A   L  L  LS  HN I+ ++  +F+ L+ L +L L ++RI  V+    + ++N
Sbjct: 218 KVPSNAFEVLKSLRRLSLSHNPIEAIQPFAFKGLANLEYLLLKNSRIRNVTRDGFSGINN 277

Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
           L  L LSHN L  L  D  + LK+L  L+LD N I
Sbjct: 278 LKHLILSHNDLENLNSDTFSLLKNLIYLKLDRNRI 312

Renders cells highly sensitive to the activation by cytokines and lipopolysaccharide (LPS).

Homo sapiens (taxid: 9606)

>sp|Q8R5M3|LRC15_RAT Leucine-rich repeat-containing protein 15 OS=Rattus norvegicus GN=Lrrc15 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 132/288 (45%), Gaps = 25/288 (8%)

Query: 107 VTVLPGKFLEGVTLHGLVISSGELKNISDGAF---IGLS------------SP------- 144
           V + P +F +   L  L +    L++I + AF   +GL+            SP       
Sbjct: 138 VQIQPAQFSQFSNLRELQLHGNNLESIPEEAFDHLVGLTKLNLGRNSFTHLSPRLFQHLG 197

Query: 145 -LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNK 203
            LQ L L  N LS +P      L  NL  L L  NQ+  L    F    +L  L LS N 
Sbjct: 198 NLQVLRLHENRLSDIPMGTFDALG-NLQELALQENQIGTLSPGLFHNNRNLQRLYLSNNH 256

Query: 204 LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR 263
           +  L       L  L  L L GN L          + ++ +L L +N +   L  +T   
Sbjct: 257 ISQLPPGIFMQLPQLNKLTLFGNSLRELSPGVFGPMPNLRELWLYNNHITS-LADNTFSH 315

Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
           L+ L+VL ++HNQ + +  GA  GL  L  LS H N +  L+ + FR+L+ L ++ L  N
Sbjct: 316 LNQLQVLILSHNQLTYISPGAFNGLTNLRELSLHTNALQDLDSNVFRSLANLQNISLQSN 375

Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           R+  + G+  A+++ LTT+ L +N L  L   +   L +L ELRL DN
Sbjct: 376 RLRQLPGSIFANVNGLTTIQLQNNNLENLPLGIFDHLVNLCELRLYDN 423

Rattus norvegicus (taxid: 10116)

>sp|Q52KR2|LRIG2_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Mus musculus GN=Lrig2 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 7/273 (2%)

Query: 119 TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178
            L  L +SS  +  I   +F  +S  L+ L L NN +S +       L+ +L  + L+ N
Sbjct: 144 ALESLDLSSNIISEIKTSSFPRMS--LKYLNLSNNRISTLEAGCFDNLSDSLLVVKLNRN 201

Query: 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG 238
           ++  +    FK L  L FL+L  N++  +       L +LR L++Q N ++     A  G
Sbjct: 202 RISMIPPKVFK-LPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFG 260

Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
           L ++ +L+L HN L G +    +  L  L+ L ++ N    +   A     +L+ L   +
Sbjct: 261 LNNMEELELEHNNLTG-VNKGWLYGLRMLQQLYMSQNAIEKISPDAWEFCQRLSELDLSY 319

Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD--- 355
           NQ+  L++ +F  LS L  L+L  NR+  ++      LSNL TLDL +N +    +D   
Sbjct: 320 NQLTRLDESAFVGLSLLERLNLGDNRVTHIADGVFRFLSNLQTLDLRNNDISWAIEDASE 379

Query: 356 LITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
             + LKSL +L L  N I    +  ++G  +++
Sbjct: 380 AFSGLKSLTKLILQGNRIKSVTQKAFIGLESLE 412

Mus musculus (taxid: 10090)

>sp|Q6P1C6|LRIG3_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 3 OS=Mus musculus GN=Lrig3 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 141/306 (46%), Gaps = 31/306 (10%)

Query: 91  LEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGL 150
           LE  + +  LD + +N++ L   F   + L  L I++  + ++  G F  L+S L  L L
Sbjct: 141 LEAFQSLETLDLSNNNISELRTAF-PPLQLKYLYINNNRVSSMEPGYFDNLASTLLVLKL 199

Query: 151 PNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQD 210
             N +S +P        P L  L+L+ N++  ++  +F+GL +L  L +  N +  L   
Sbjct: 200 NRNRISAIPPKMFK--LPQLQHLELNRNKIKNVDGLTFQGLGALKSLKMQRNGVTKLMDG 257

Query: 211 CLAPLVTLRVLRLQGNRLTVSVVAALQGL------------------------RSVTDLD 246
               L  + VL+L  N LT      L GL                        + +++LD
Sbjct: 258 AFWGLSNMEVLQLDHNNLTEITKGWLYGLLMLRELHLSQNAINRISPDAWEFCQKLSELD 317

Query: 247 LSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID-VLE 305
           L+ N L+  L  S+   LS L  L I +N+ S +   A  GL  L +L   +N+I   +E
Sbjct: 318 LTFNHLSR-LDDSSFLGLSLLNALHIGNNKVSYIADCAFRGLTSLKTLDLRNNEISWTIE 376

Query: 306 DHS--FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 363
           D S  F  L  L  L L  NRI +++  + A L  L  LDLS N + +L  +  + +K L
Sbjct: 377 DMSGAFSGLDRLRQLILQGNRIRSITKKAFAGLDTLEHLDLSGNAIMSLQSNAFSQMKKL 436

Query: 364 QELRLD 369
           Q+L L+
Sbjct: 437 QQLHLN 442

Mus musculus (taxid: 10090)

>sp|D4A6D8|LRRT1_RAT Leucine-rich repeat transmembrane neuronal protein 1 OS=Rattus norvegicus GN=Lrrtm1 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 115/250 (46%), Gaps = 29/250 (11%)

Query: 130 LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFK 189
           L  +  G F GL   L  L L +N +  V   A   L   +  L LS NQ+ +L NT+F+
Sbjct: 77  LSELRAGQFTGLMQ-LTWLYLDHNHICSVQGDAFQKLR-RVKELTLSSNQITELANTTFR 134

Query: 190 GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH 249
            + +L  +DLSYNKL  L+ D    L  L  L ++ N +    V   Q  R         
Sbjct: 135 PMPNLRSVDLSYNKLQALAPDLFHGLRKLTTLHMRANAIQFVPVRIFQDCR--------- 185

Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 309
                           SLK L I +NQ  S+ R + AGL KLT L   HN +  +    F
Sbjct: 186 ----------------SLKFLDIGYNQLKSLARNSFAGLFKLTELHLEHNDLIKVNFAHF 229

Query: 310 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 369
             L +L+ L L  N+ VA+  +SL  + NL  +DLS N +  +   +   +  LQ L+LD
Sbjct: 230 PRLISLNSLCLRRNK-VAIVVSSLDWVWNLEKMDLSGNEIEYMEPHVFETVPYLQSLQLD 288

Query: 370 DNDIS-MEPE 378
            N ++ +EP 
Sbjct: 289 SNRLTYIEPR 298

Exhibits strong synaptogenic activity, restricted to excitatory presynaptic differentiation, acting at both pre- and postsynaptic level.

Rattus norvegicus (taxid: 10116)

>sp|Q80X72|LRC15_MOUSE Leucine-rich repeat-containing protein 15 OS=Mus musculus GN=Lrrc15 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 119/261 (45%), Gaps = 27/261 (10%)

Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
           P  F     L  L +    L +I  G F  L + LQ L L  N +  + +  L     NL
Sbjct: 190 PRVFQHLGNLQVLRLYENRLSDIPMGTFDALGN-LQELALQENQIGTL-SPGLFHNNRNL 247

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
            RL LS+N +  L    F  L  LN L L  N L  LS     P+  LR L L  N +T 
Sbjct: 248 QRLYLSNNHISHLPPGIFMQLPHLNKLTLFGNSLKELSPGVFGPMPNLRELWLYNNHIT- 306

Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
                     S+ D   SH              L+ L+VL ++HNQ S +  GA  GL  
Sbjct: 307 ----------SLPDNAFSH--------------LNQLQVLILSHNQLSYISPGAFNGLTN 342

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L  LS H N +  L+ + FR+L+ L ++ L +NR+  + G+  A+++ L T+ L +N L 
Sbjct: 343 LRELSLHTNALQDLDGNVFRSLANLRNVSLQNNRLRQLPGSIFANVNGLMTIQLQNNNLE 402

Query: 351 ALTQDLITPLKSLQELRLDDN 371
            L   +   L +L ELRL DN
Sbjct: 403 NLPLGIFDHLGNLCELRLYDN 423

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	694
193718353	777	PREDICTED: LRR receptor-like serine/thre	0.466	0.416	0.633	1e-109
270011063	1155	cys-loop ligand-gated ion channel subuni	0.465	0.279	0.591	1e-100
91086515	714	PREDICTED: similar to CG11136 CG11136-PA	0.465	0.452	0.591	1e-100
340724664	795	PREDICTED: slit homolog 1 protein-like [	0.472	0.412	0.590	1e-100
350398155	795	PREDICTED: slit homolog 1 protein-like [	0.461	0.402	0.592	2e-98
328782766	794	PREDICTED: slit homolog 1 protein-like [	0.472	0.413	0.584	3e-98
380021110	771	PREDICTED: slit homolog 1 protein-like [	0.471	0.424	0.586	1e-97
190702447	747	leucine-rich repeat protein [Glyptapante	0.462	0.429	0.579	3e-97
190702295	747	leucine-rich repeat protein [Glyptapante	0.461	0.428	0.581	5e-97
383865599	791	PREDICTED: slit homolog 1 protein-like [	0.463	0.407	0.582	1e-96

>gi|193718353|ref|XP_001950625.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Acyrthosiphon pisum]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/325 (63%), Positives = 253/325 (77%), Gaps = 1/325 (0%)

Query: 54  WSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGK 113
           W CP ++N  CACDLPHTLRCT  KS    ++ +LR L     +SLLDCT+ NV  LP K
Sbjct: 48  WKCPEVRNVSCACDLPHTLRCTGGKSTFETVARALRRLSGTSSISLLDCTVQNVGSLPAK 107

Query: 114 FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL 173
            L+GV+LHGLV+SSGE+K++SD AF GL SPLQALGLPNNLL  VP+SALA L+  L+RL
Sbjct: 108 MLDGVSLHGLVVSSGEIKSVSDAAFDGLGSPLQALGLPNNLLERVPSSALAMLS-GLERL 166

Query: 174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV 233
           DLSHN+L+ + N SFKG  +L FLDLS N +  +S D    L  L+VLRLQ N LT +  
Sbjct: 167 DLSHNRLHTVHNNSFKGSPNLTFLDLSNNSINFISPDAFVNLPFLKVLRLQNNLLTSAST 226

Query: 234 AALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTS 293
           + LQGLRS+ +LDLS NLLAG LGPST+PRL +L+++S+AHNQ +SVRRG+ AGL+ + S
Sbjct: 227 SHLQGLRSLIELDLSSNLLAGQLGPSTLPRLPNLQIISLAHNQLNSVRRGSFAGLEGIVS 286

Query: 294 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353
           L+ +HNQIDVLEDH FRA+ TLSHLDLA+NRIVAVS ASLAHL+ L TLDLSHNFLR+LT
Sbjct: 287 LTLNHNQIDVLEDHGFRAVPTLSHLDLANNRIVAVSSASLAHLTKLKTLDLSHNFLRSLT 346

Query: 354 QDLITPLKSLQELRLDDNDISMEPE 378
            DLI PLKS+Q ++LDDNDIS+  E
Sbjct: 347 SDLIVPLKSIQVIKLDDNDISIVAE 371

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011063|gb|EFA07511.1| cys-loop ligand-gated ion channel subunit-like protein [Tribolium castaneum]

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/328 (59%), Positives = 243/328 (74%), Gaps = 5/328 (1%)

Query: 51  PTPWSCPSIKND---LCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNV 107
           P  W CP I       C+CD+PHTLRCT +KS +  I+++LR L     VSLLDCT+ NV
Sbjct: 22  PEVWKCPKISEQPVVECSCDMPHTLRCTGDKSAMSIIAKTLR-LHNAADVSLLDCTVQNV 80

Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA 167
           + + G  LEG++LHGLVISSGE+++I + AF GL++PLQALGLPNN L+ VPT AL PL 
Sbjct: 81  SAISGPLLEGISLHGLVISSGEIRDIDESAFKGLTAPLQALGLPNNKLATVPTQALKPL- 139

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
           P LDRLDLS N+L  LE TSFKGL +L+F+DLS N L  +  +    L  L++LRL+GNR
Sbjct: 140 PELDRLDLSSNKLKSLEATSFKGLRNLSFIDLSDNMLTKIVPNTFDDLPQLKILRLRGNR 199

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
           LT+  +  L  LR+V ++DLS N L GPLGP T P++ +L+ + ++HN  SS++ GAL G
Sbjct: 200 LTIQTITKLNPLRTVEEIDLSGNNLVGPLGPKTFPKMENLRDIQLSHNSLSSIKMGALQG 259

Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           L+KLTSLS  HNQIDVLEDH+F  L++L  L LAHNRIVAVSGASLAHL+ LT LDL  N
Sbjct: 260 LNKLTSLSLQHNQIDVLEDHAFSHLTSLVSLVLAHNRIVAVSGASLAHLNKLTDLDLRFN 319

Query: 348 FLRALTQDLITPLKSLQELRLDDNDISM 375
           FLRALT DLI PLKSL+ L+LDDNDISM
Sbjct: 320 FLRALTADLILPLKSLKNLKLDDNDISM 347

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086515|ref|XP_971643.1| PREDICTED: similar to CG11136 CG11136-PA [Tribolium castaneum]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/328 (59%), Positives = 243/328 (74%), Gaps = 5/328 (1%)

Query: 51  PTPWSCPSIKND---LCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNV 107
           P  W CP I       C+CD+PHTLRCT +KS +  I+++LR L     VSLLDCT+ NV
Sbjct: 22  PEVWKCPKISEQPVVECSCDMPHTLRCTGDKSAMSIIAKTLR-LHNAADVSLLDCTVQNV 80

Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA 167
           + + G  LEG++LHGLVISSGE+++I + AF GL++PLQALGLPNN L+ VPT AL PL 
Sbjct: 81  SAISGPLLEGISLHGLVISSGEIRDIDESAFKGLTAPLQALGLPNNKLATVPTQALKPL- 139

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
           P LDRLDLS N+L  LE TSFKGL +L+F+DLS N L  +  +    L  L++LRL+GNR
Sbjct: 140 PELDRLDLSSNKLKSLEATSFKGLRNLSFIDLSDNMLTKIVPNTFDDLPQLKILRLRGNR 199

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
           LT+  +  L  LR+V ++DLS N L GPLGP T P++ +L+ + ++HN  SS++ GAL G
Sbjct: 200 LTIQTITKLNPLRTVEEIDLSGNNLVGPLGPKTFPKMENLRDIQLSHNSLSSIKMGALQG 259

Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           L+KLTSLS  HNQIDVLEDH+F  L++L  L LAHNRIVAVSGASLAHL+ LT LDL  N
Sbjct: 260 LNKLTSLSLQHNQIDVLEDHAFSHLTSLVSLVLAHNRIVAVSGASLAHLNKLTDLDLRFN 319

Query: 348 FLRALTQDLITPLKSLQELRLDDNDISM 375
           FLRALT DLI PLKSL+ L+LDDNDISM
Sbjct: 320 FLRALTADLILPLKSLKNLKLDDNDISM 347

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724664|ref|XP_003400701.1| PREDICTED: slit homolog 1 protein-like [Bombus terrestris]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/332 (59%), Positives = 253/332 (76%), Gaps = 4/332 (1%)

Query: 46  SSPSTPTPWSCPSIKND--LCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCT 103
           SSPS+   W CP+I      C+CDLPHTLRCT +++ L  IS+ LR   P   +SLLD T
Sbjct: 82  SSPSSDMVWECPNITKAGVECSCDLPHTLRCTGDRTTLQIISKHLRFSRPGT-ISLLDVT 140

Query: 104 LSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSAL 163
           ++ +++LP +FLE V LHGLV+S+GEL+ + + AFIGL +PLQALGLPNNLL  VPT+AL
Sbjct: 141 VTGISLLPARFLEDVALHGLVVSTGELRRVHENAFIGLVTPLQALGLPNNLLDSVPTAAL 200

Query: 164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
           + L   L+RLDLS N+L  LE  SFKGLS+L +LDL  N L  LS    A +  LR LR+
Sbjct: 201 SHLV-GLERLDLSQNKLKMLEAESFKGLSNLTYLDLCDNLLSQLSPQAFAAVPLLRSLRM 259

Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
           +GNRL+VS ++AL+GL+S+ +LDLS+NLL GP+GP+ +P++  L  L+++ N+  +V++G
Sbjct: 260 RGNRLSVSALSALRGLKSLEELDLSNNLLLGPMGPNLLPQMPRLHFLTVSENELINVQQG 319

Query: 284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
           AL GL  LT LS  HNQIDVLEDHSF+ LSTL+ LDLA+NRIVAVS ASLAHL  LTTLD
Sbjct: 320 ALGGLRNLTYLSLSHNQIDVLEDHSFKYLSTLTRLDLANNRIVAVSSASLAHLERLTTLD 379

Query: 344 LSHNFLRALTQDLITPLKSLQELRLDDNDISM 375
           L+HNFLR+LT DL+ PLKSLQ+LRLDDNDI+M
Sbjct: 380 LTHNFLRSLTADLVVPLKSLQDLRLDDNDITM 411

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398155|ref|XP_003485103.1| PREDICTED: slit homolog 1 protein-like [Bombus impatiens]

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/324 (59%), Positives = 248/324 (76%), Gaps = 4/324 (1%)

Query: 54  WSCPSIKND--LCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP 111
           W CP+I      C+CDLPHTLRCT +++ L  IS+ LR   P   +SLLD T++ +++LP
Sbjct: 90  WECPNITKAGVECSCDLPHTLRCTGDRTTLQIISKHLRFSRPGT-ISLLDVTVTGISLLP 148

Query: 112 GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD 171
            +FLE V LHGLV+S+GEL+ + + AFIGL +PLQALGLPNNLL  VPT+AL+ L   L+
Sbjct: 149 ARFLEDVALHGLVVSTGELRRVHENAFIGLVTPLQALGLPNNLLDSVPTTALSHLV-GLE 207

Query: 172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
           RLDLS N+L  LE  SFKGLS+L +LDL  N L  LS    A +  LR LR++GNRL+VS
Sbjct: 208 RLDLSQNKLKMLEAESFKGLSNLTYLDLCDNLLSQLSPQAFAAVPLLRSLRMRGNRLSVS 267

Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291
            ++AL+GL+S+ +LDLS+NLL GP+GP+ +P++  L  L+++ N+  +V++GAL GL  L
Sbjct: 268 ALSALRGLKSLEELDLSNNLLLGPMGPNLLPQMPRLHFLTVSENELINVQQGALGGLRNL 327

Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
           T LS  HNQIDVLEDHSF+ LSTL+ LDLA+NRIVAVS ASLAHL  LTTLDL+HNFLR+
Sbjct: 328 TYLSLSHNQIDVLEDHSFKYLSTLTRLDLANNRIVAVSSASLAHLERLTTLDLTHNFLRS 387

Query: 352 LTQDLITPLKSLQELRLDDNDISM 375
           LT DL+ PLKSLQ+LRLDDNDI+M
Sbjct: 388 LTADLVVPLKSLQDLRLDDNDITM 411

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782766|ref|XP_623776.3| PREDICTED: slit homolog 1 protein-like [Apis mellifera]

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/332 (58%), Positives = 251/332 (75%), Gaps = 4/332 (1%)

Query: 46  SSPSTPTPWSCPSIKND--LCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCT 103
           SSPS  T W CP+I      C+CD PHTLRCT +++ L  I+++L+   P   +SLLD T
Sbjct: 80  SSPSPDTIWECPNITKAGVECSCDFPHTLRCTGDRTALQIINKNLKFSRPGT-ISLLDVT 138

Query: 104 LSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSAL 163
           ++ +++LP +FLE V LHGLV+SSGELK I + AF+G  +PLQALGLPNNLL  VPT+AL
Sbjct: 139 ITGISLLPSRFLEDVALHGLVVSSGELKRIHENAFVGFITPLQALGLPNNLLDSVPTTAL 198

Query: 164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
           + L   L+RLDLS N+L  LE  SFK LS+L +LDL  N L  LS    A +  LR LR+
Sbjct: 199 SHLI-GLERLDLSQNKLKMLEAGSFKDLSNLTYLDLCDNLLSQLSPQAFASVPLLRSLRM 257

Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
           +GNRL+VS ++AL+GL+S+ +LDLS+NLL GP+GP+ +P++  L+ L+++ N+  +V++G
Sbjct: 258 RGNRLSVSALSALRGLKSLEELDLSNNLLLGPMGPNLLPQMPRLRFLTVSENELINVQQG 317

Query: 284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
           AL GL  LT LS  HNQIDVLEDHSF+ LSTL  LDLA+NRIVAVS ASLAHL  LTTLD
Sbjct: 318 ALVGLRNLTYLSLSHNQIDVLEDHSFKYLSTLIRLDLANNRIVAVSSASLAHLEKLTTLD 377

Query: 344 LSHNFLRALTQDLITPLKSLQELRLDDNDISM 375
           L+HNFLR+LT DL+ PLKSLQ+LRLDDNDI+M
Sbjct: 378 LTHNFLRSLTADLVVPLKSLQDLRLDDNDITM 409

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021110|ref|XP_003694417.1| PREDICTED: slit homolog 1 protein-like [Apis florea]

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/331 (58%), Positives = 248/331 (74%), Gaps = 4/331 (1%)

Query: 47  SPSTPTPWSCPSIKND--LCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTL 104
           SPS  T W CP+I      C+CD PHTLRCT +++ L  IS+ L+   P   +SLLD T+
Sbjct: 58  SPSPDTIWECPNITKAGVECSCDFPHTLRCTGDRTALQIISKKLKFSRPGT-ISLLDVTI 116

Query: 105 SNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALA 164
           + +++LP +FLE V LHGLV+SSGELK I + AF+GL +PLQALGLPNNLL  VPT AL+
Sbjct: 117 TGISLLPSRFLEDVALHGLVVSSGELKRIHENAFVGLITPLQALGLPNNLLDSVPTIALS 176

Query: 165 PLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ 224
            L   L+RLDLS N+L  LE  SFK LS+L +LDL  N L  LS      +  LR LR++
Sbjct: 177 HLI-GLERLDLSQNKLKMLEAGSFKDLSNLTYLDLCDNLLSQLSPQAFTAVPLLRSLRMR 235

Query: 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA 284
           GNRL+VS ++AL+GL+S+ +LDLS+NLL GP+GP+ +P++  L+ L+++ N+  +V++GA
Sbjct: 236 GNRLSVSALSALRGLKSLEELDLSNNLLLGPMGPNLLPQMPRLRFLTVSENELINVQQGA 295

Query: 285 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
           L GL  LT LS  HNQIDVLEDHSF+ LSTL  LDLA+NRIVAVS ASLAHL  LTTLDL
Sbjct: 296 LVGLRNLTYLSLSHNQIDVLEDHSFKYLSTLIRLDLANNRIVAVSSASLAHLEKLTTLDL 355

Query: 345 SHNFLRALTQDLITPLKSLQELRLDDNDISM 375
           +HNFLR+LT DL+ PLKSLQ+LRLDDNDI+M
Sbjct: 356 THNFLRSLTADLVVPLKSLQDLRLDDNDITM 386

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|190702447|gb|ACE75336.1| leucine-rich repeat protein [Glyptapanteles indiensis]

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/326 (57%), Positives = 246/326 (75%), Gaps = 5/326 (1%)

Query: 52  TPWSCPSI--KNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTV 109
           +PW CP+I  KN  C+CD PHTLRCT +++ L  I+  L+  +    +SLLD T++ ++ 
Sbjct: 48  SPWECPNITKKNVECSCDFPHTLRCTGDRTALQTINSHLKSSQG--AISLLDVTVTGIST 105

Query: 110 LPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPN 169
           LP +FL+ V LHGLV+S+GEL+ ++D AF GL  PLQALGLPNNLL  VPT ALA L   
Sbjct: 106 LPAEFLQDVALHGLVVSTGELRRVNDNAFTGLVRPLQALGLPNNLLESVPTLALAQLN-G 164

Query: 170 LDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
           LDRLDLS N+L+ LE  SFK L+SL +LDLS N L  LS     PL  LR L+++GNRL+
Sbjct: 165 LDRLDLSLNKLHTLEANSFKSLASLTYLDLSDNLLSQLSPQAFGPLKQLRSLKMRGNRLS 224

Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289
           VS ++AL+GL+++ +LDLS NLL GPLGP+ +P +  L+ L+++ N+  +V++GAL GL 
Sbjct: 225 VSALSALRGLKNLEELDLSSNLLIGPLGPNLLPSMPKLRFLTLSENELINVQQGALVGLK 284

Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
            L+ LS  HNQIDVLEDHSF+ LSTL++LDLA NRIVAVS ASLAHL NL TLDL+HNFL
Sbjct: 285 NLSYLSLSHNQIDVLEDHSFKYLSTLTNLDLASNRIVAVSSASLAHLENLVTLDLTHNFL 344

Query: 350 RALTQDLITPLKSLQELRLDDNDISM 375
           R+LT DL+ PL SLQ+L+LDDNDI+M
Sbjct: 345 RSLTADLVIPLTSLQDLKLDDNDITM 370

Source: Glyptapanteles indiensis

Species: Glyptapanteles indiensis

Genus: Glyptapanteles

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|190702295|gb|ACE75191.1| leucine-rich repeat protein [Glyptapanteles flavicoxis]

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 189/325 (58%), Positives = 245/325 (75%), Gaps = 5/325 (1%)

Query: 53  PWSCPSI--KNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL 110
           PW CP+I  KN  C+CD PHTLRCT +++ L  I+  L+  +    +SLLD T++ ++ L
Sbjct: 49  PWECPNITKKNVECSCDFPHTLRCTGDRTALQTINSHLKSSQG--AISLLDVTVTGISTL 106

Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
           P +FL+ V LHGLV+S+GEL+ ++D AF GL  PLQALGLPNNLL  VPT ALA L   L
Sbjct: 107 PAEFLQDVALHGLVVSTGELRRVNDNAFTGLVRPLQALGLPNNLLESVPTLALAQLN-GL 165

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
           DRLDLS N+L+ LE  SFK L+SL +LDLS N L  LS     PL  LR L+++GNRL+V
Sbjct: 166 DRLDLSLNKLHTLEANSFKSLASLTYLDLSDNLLSQLSPQAFGPLKQLRSLKMRGNRLSV 225

Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
           S ++AL+GL+++ +LDLS NLL GPLGP+ +P +  L+ L+++ N+  +V++GAL GL  
Sbjct: 226 SALSALRGLKNLEELDLSSNLLIGPLGPNLLPSMPKLRFLTLSENELINVQQGALVGLKN 285

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L+ LS  HNQIDVLEDHSF+ LSTL++LDLA NRIVAVS ASLAHL NL TLDL+HNFLR
Sbjct: 286 LSYLSLSHNQIDVLEDHSFKYLSTLTNLDLASNRIVAVSSASLAHLENLVTLDLTHNFLR 345

Query: 351 ALTQDLITPLKSLQELRLDDNDISM 375
           +LT DL+ PL SLQ+L+LDDNDI+M
Sbjct: 346 SLTADLVIPLISLQDLKLDDNDITM 370

Source: Glyptapanteles flavicoxis

Species: Glyptapanteles flavicoxis

Genus: Glyptapanteles

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865599|ref|XP_003708260.1| PREDICTED: slit homolog 1 protein-like [Megachile rotundata]

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 190/326 (58%), Positives = 245/326 (75%), Gaps = 4/326 (1%)

Query: 52  TPWSCPSIKND--LCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTV 109
           T W CP+I      C+CD PHTLRCT +++ L  IS  LR   P   +SLLD T++ +++
Sbjct: 86  TVWECPNITKAGVECSCDFPHTLRCTGDRTALQTISRHLRFSRPGT-ISLLDVTVTGISL 144

Query: 110 LPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPN 169
           LP +FLE + LHGLV+S+GEL  + + AFIGL  PLQALGLPNNLL  VPT+AL+ L+  
Sbjct: 145 LPARFLENIALHGLVVSTGELIRVHENAFIGLIRPLQALGLPNNLLDSVPTAALSHLS-G 203

Query: 170 LDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
           L++LDLS N+L  LE  SFKGLS+L +LDL  N L  LS    A L +LR LR++GNRL+
Sbjct: 204 LEKLDLSQNKLKMLEADSFKGLSNLTYLDLCDNLLSQLSPQAFASLPSLRSLRMRGNRLS 263

Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289
           VS ++AL+GL+ + +LDLS+NLL G +GP+ +PR+  L+ L+++ N+  +VR+GAL GL 
Sbjct: 264 VSALSALRGLKILEELDLSNNLLLGSMGPTLLPRMPRLRFLTVSENELINVRQGALMGLR 323

Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
            LT LS  HNQIDVLEDHSF+ LSTL+ LDLA+NRIVAVS ASLAHL  LT LDL+HNFL
Sbjct: 324 NLTYLSLSHNQIDVLEDHSFKYLSTLTRLDLANNRIVAVSSASLAHLEKLTILDLTHNFL 383

Query: 350 RALTQDLITPLKSLQELRLDDNDISM 375
           R+LT DL+ PLKSLQ+LRLDDNDI+M
Sbjct: 384 RSLTADLVVPLKSLQDLRLDDNDITM 409

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	694
FB|FBgn0034540	808	Lrt "Leucine-rich tendon-speci	0.445	0.382	0.501	7.6e-74
UNIPROTKB|P35858	605	IGFALS "Insulin-like growth fa	0.367	0.421	0.356	3e-27
WB|WBGene00002282	773	let-4 [Caenorhabditis elegans	0.442	0.397	0.283	2.5e-25
UNIPROTKB|F1LRE2	602	Igfals "Insulin-like growth fa	0.410	0.473	0.297	4.8e-25
RGD|68429	603	Igfals "insulin-like growth fa	0.410	0.472	0.297	6.4e-25
MGI|MGI:107973	603	Igfals "insulin-like growth fa	0.410	0.472	0.294	2.1e-24
UNIPROTKB|Q8TF66	581	LRRC15 "Leucine-rich repeat-co	0.422	0.504	0.290	1.5e-23
FB|FBgn0033250	470	CG14762 [Drosophila melanogast	0.465	0.687	0.281	3.1e-23
UNIPROTKB|Q1KS52	606	ALS "Acid-labile subunit" [Sus	0.420	0.481	0.305	3.9e-23
UNIPROTKB|F1NI07	604	IGFALS "Uncharacterized protei	0.514	0.591	0.275	6.9e-23

FB|FBgn0034540 Lrt "Leucine-rich tendon-specific protein" [Drosophila melanogaster (taxid:7227)]

 Score = 720 (258.5 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
 Identities = 158/315 (50%), Positives = 207/315 (65%)

Query:    64 CACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHG 122
             C CDLPHTLRC  +   +  +++ LR   P   +SLLDC+L NVT L   K  + V+LHG
Sbjct:   123 CGCDLPHTLRCNIDLHGMMLLADRLR-TSPYS-ISLLDCSLRNVTFLSDAKIFDNVSLHG 180

Query:   123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
             LVISSGE+K +   AF+G+  PLQALGLP N L  VP +AL+ L+  L+RLDL++N++  
Sbjct:   181 LVISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSA-LERLDLANNKIKA 239

Query:   183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT--VSVVAALQGLR 240
             L    F GL+SL +L+LS N++ ++SQ     L  L VL+L GNRL      + +L    
Sbjct:   240 LGTADFVGLTSLVYLELSNNQISSISQRTFVNLRKLEVLKLGGNRLGDYAQSLRSLSQCL 299

Query:   241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
             S+  LDL  N L GPL   T+P + +L+ L++  N   S++  ALA   +L SLS  HNQ
Sbjct:   300 SLRQLDLQANNLNGPLSEQTLPGMRNLESLNLNRNLIKSIQNKALANFSRLVSLSLRHNQ 359

Query:   301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
             IDVL+DH+F  L  L  LDL++N IVA+S ASL HLS LT LDL+HNFLRALT DLI PL
Sbjct:   360 IDVLQDHAFFGLGALDSLDLSYNGIVAISSASLQHLSRLTVLDLTHNFLRALTSDLIAPL 419

Query:   361 KSLQELRLDDNDISM 375
              SL+ELRL  NDIS+
Sbjct:   420 PSLRELRLAGNDISI 434

GO:0016021 "integral to membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:2001282 "negative regulation of muscle cell chemotaxis toward tendon cell" evidence=IMP

GO:0005927 "muscle tendon junction" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:2001283 "Roundabout signaling pathway involved in muscle cell chemotaxis toward tendon cell" evidence=IGI

UNIPROTKB|P35858 IGFALS "Insulin-like growth factor-binding protein complex acid labile subunit" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
 Identities = 92/258 (35%), Positives = 128/258 (49%)

Query:   112 GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD 171
             G F     L  L +S+  L  + DG F GL S L  L L  N L+V+P +A   L  +L 
Sbjct:   140 GTFAHTPALASLGLSNNRLSRLEDGLFEGLGS-LWDLNLGWNSLAVLPDAAFRGLG-SLR 197

Query:   172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
              L L+ N+L  L+   F GL+ L  LDLS N L  +  +    L  L+ L L  N +   
Sbjct:   198 ELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAV 257

Query:   232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291
                A  GL+++  LDLSHN +AG L   T P L  L+VL ++HN  +S+R      L  L
Sbjct:   258 APGAFLGLKALRWLDLSHNRVAGLL-EDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFL 316

Query:   292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
               L   HN+I  L + SF  L  L  L L HN++  V   +   L+N+  ++LS N LR 
Sbjct:   317 EELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRN 376

Query:   352 LTQDLITPLKSLQELRLD 369
             L + +   L  L  L L+
Sbjct:   377 LPEQVFRGLGKLHSLHLE 394

GO:0007155 "cell adhesion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005576 "extracellular region" evidence=NAS;TAS

GO:0005520 "insulin-like growth factor binding" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

WB|WBGene00002282 let-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 298 (110.0 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
 Identities = 89/314 (28%), Positives = 151/314 (48%)

Query:    64 CACDLPHT-LRCTANKSDLYAISESLRGLEPDER-VSLLDCTLSNVTVLPGKFLEGVTLH 121
             C C   H+ +    + S    I + +R  +     +  L    + +  LP  F  G+ + 
Sbjct:    29 CFCSEVHSGIVLDCSNSSASGILQIIRTNQAQVGLIQSLTMNQAELVELPPNFFSGLFIR 88

Query:   122 GLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLY 181
              L +S  ++K I D AF G++  L+ + L +NL+  VP +ALA L PNL RLDLS+N + 
Sbjct:    89 RLDLSQNKIKKIDDAAFAGINPVLEEVVLNHNLIEKVPAAALAGL-PNLLRLDLSNNSIV 147

Query:   182 KL-ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLV-TLRVLRLQGNRLTVSVVAALQGL 239
             ++ E   F  L+ L  ++L  NK+ ++       +  +++ + L  N +T    +A++GL
Sbjct:   148 EIQEQEIFPNLNKLYDINLGSNKIFSIHTSTFQNVKNSIQTINLGHNNMTAVPSSAIRGL 207

Query:   240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
             + +  L L  N +   L       L  L +L++A NQ   + R A   +  L  L    N
Sbjct:   208 KQLQSLHLHKNRIE-QLDALNFLNLPVLNLLNLAGNQIHELNRQAFLNVPSLRYLYLSGN 266

Query:   300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
             +I  L  + F+    L  LDL +N I A+   SL+ L  L  L L+HN +  ++ +  T 
Sbjct:   267 KITKLTAYQFQTFEQLEMLDLTNNEIGAIPANSLSGLKQLRQLYLAHNKISNISSNAFTN 326

Query:   360 LKSLQELRLDDNDI 373
               S+  L L  N++
Sbjct:   327 -SSIVVLVLSSNEL 339

GO:0016021 "integral to membrane" evidence=IEA

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI;IMP

GO:0002064 "epithelial cell development" evidence=IMP

GO:0035150 "regulation of tube size" evidence=IMP

GO:0045177 "apical part of cell" evidence=IDA

UNIPROTKB|F1LRE2 Igfals "Insulin-like growth factor-binding protein complex acid labile subunit" [Rattus norvegicus (taxid:10116)]

 Score = 299 (110.3 bits), Expect = 4.8e-25, Sum P(2) = 4.8e-25
 Identities = 86/289 (29%), Positives = 140/289 (48%)

Query:   105 SNVTVLPGKFLEGV-TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSAL 163
             +++ VLP    +G+  LH LV++  +L  +    F GL   L+ L L  N L  V  +  
Sbjct:   179 NSLVVLPDTVFQGLGNLHELVLAGNKLTYLQPALFCGLGE-LRELDLSRNALRSVKANVF 237

Query:   164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
               L P L +L L  N +  +   +F G+ +L +LDLS+N++  L +D    L+ L VLRL
Sbjct:   238 VHL-PRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVAGLMEDTFPGLLGLHVLRL 296

Query:   224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
               N +        + L  + +L L HN +   LG  T   L  L+VL++  NQ + VR G
Sbjct:   297 AHNAIASLRPRTFKDLHFLEELQLGHNRIR-QLGERTFEGLGQLEVLTLNDNQITEVRVG 355

Query:   284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
             A +GL  +  ++   N +  L +  F+ L  L  L L H+ +  V   + A LS L  L 
Sbjct:   356 AFSGLFNVAVMNLSGNCLRSLPERVFQGLDKLHSLHLEHSCLGHVRLHTFAGLSGLRRLF 415

Query:   344 LSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELI 392
             L  N + ++ +  +  L  L EL L  N ++  P  ++ G   ++  L+
Sbjct:   416 LRDNSISSIEEQSLAGLSELLELDLTTNRLTHLPRQLFQGLGHLEYLLL 464

GO:0005634 "nucleus" evidence=IEA

RGD|68429 Igfals "insulin-like growth factor binding protein, acid labile subunit" [Rattus norvegicus (taxid:10116)]

 Score = 298 (110.0 bits), Expect = 6.4e-25, Sum P(2) = 6.4e-25
 Identities = 86/289 (29%), Positives = 140/289 (48%)

Query:   105 SNVTVLPGKFLEGV-TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSAL 163
             +++ VLP    +G+  LH LV++  +L  +    F GL   L+ L L  N L  V  +  
Sbjct:   180 NSLVVLPDTVFQGLGNLHELVLAGNKLTYLQPALFCGLGE-LRELDLSRNALRSVKANVF 238

Query:   164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
               L P L +L L  N +  +   +F G+ +L +LDLS+N++  L +D    L+ L VLRL
Sbjct:   239 VHL-PRLQKLYLDRNLITAVAPGAFLGMKALRWLDLSHNRVAGLMEDTFPGLLGLHVLRL 297

Query:   224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
               N +        + L  + +L L HN +   LG  T   L  L+VL++  NQ + VR G
Sbjct:   298 AHNAIASLRPRTFKDLHFLEELQLGHNRIR-QLGERTFEGLGQLEVLTLNDNQITEVRVG 356

Query:   284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
             A +GL  +  ++   N +  L +  F+ L  L  L L H+ +  V   + A LS L  L 
Sbjct:   357 AFSGLFNVAVMNLSGNCLRSLPERVFQGLDKLHSLHLEHSCLGHVRLHTFAGLSGLRRLF 416

Query:   344 LSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELI 392
             L  N + ++ +  +  L  L EL L  N ++  P  ++ G   ++  L+
Sbjct:   417 LRDNSISSIEEQSLAGLSELLELDLTTNRLTHLPRQLFQGLGHLEYLLL 465

GO:0005520 "insulin-like growth factor binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0042567 "insulin-like growth factor ternary complex" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:107973 Igfals "insulin-like growth factor binding protein, acid labile subunit" [Mus musculus (taxid:10090)]

 Score = 299 (110.3 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
 Identities = 85/289 (29%), Positives = 139/289 (48%)

Query:   105 SNVTVLPGKFLEGV-TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSAL 163
             +++ VLP    +G+  LH LV++  +L  +      GL   L+ L L  N L  V  +  
Sbjct:   180 NSLVVLPDTVFQGLGNLHELVLAGNKLTYLQPALLCGLGE-LRELDLSRNALRSVKANVF 238

Query:   164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
               L P L +L L  N +  +   +F G+ +L +LDLS+N++  L +D    L+ L VLRL
Sbjct:   239 IHL-PRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVAGLLEDTFPGLLGLHVLRL 297

Query:   224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
               N +T       + L  + +L L HN +   LG  T   L  L+VL++  NQ   V+ G
Sbjct:   298 AHNAITSLRPRTFKDLHFLEELQLGHNRIR-QLGEKTFEGLGQLEVLTLNDNQIHEVKVG 356

Query:   284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
             A  GL  +  ++   N +  L +H F+ L  L  L L H+ +  +   + A LS L  L 
Sbjct:   357 AFFGLFNVAVMNLSGNCLRSLPEHVFQGLGRLHSLHLEHSCLGRIRLHTFAGLSGLRRLF 416

Query:   344 LSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELI 392
             L  N + ++ +  +  L  L EL L  N ++  P  ++ G   ++  L+
Sbjct:   417 LRDNSISSIEEQSLAGLSELLELDLTANQLTHLPRQLFQGLGQLEYLLL 465

GO:0005515 "protein binding" evidence=IPI

GO:0005520 "insulin-like growth factor binding" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0042567 "insulin-like growth factor ternary complex" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|Q8TF66 LRRC15 "Leucine-rich repeat-containing protein 15" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
 Identities = 87/299 (29%), Positives = 139/299 (46%)

Query:    96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLL 155
             R S ++CT + +  +P           L I +  +  +++  F+ +S+ L AL +  N L
Sbjct:    33 RASQVECTGARIVAVPTPLPWNAM--SLQILNTHITELNESPFLNISA-LIALRIEKNEL 89

Query:   156 SVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL 215
             S +   A   L  +L  L L++N+L  L    F+GL SL  L LS N+L+ +     +  
Sbjct:    90 SRITPGAFRNLG-SLRYLSLANNKLQVLPIGLFQGLDSLESLLLSSNQLLQIQPAHFSQC 148

Query:   216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
               L+ L+L GN L      A   L  +T L+L  N L   + P     L +L+VL +  N
Sbjct:   149 SNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTH-ISPRVFQHLGNLQVLRLYEN 207

Query:   276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
             + + +  G   GL  L  L+   NQI +L    F     L  L L++N I  +  +    
Sbjct:   208 RLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQ 267

Query:   336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYS 394
             L  L  L L  N L+ L+  +  P+ +L+EL L DN IS  P+ ++     + + LI S
Sbjct:   268 LPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQV-LILS 325

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033250 CG14762 [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 3.1e-23, P = 3.1e-23
 Identities = 93/330 (28%), Positives = 152/330 (46%)

Query:    64 CACDLPHT-LRCTANKSDLYAISESLRGLEPDERVSL-LDCTLSNVTVLPGKFLEGVTLH 121
             C C +    L      +DL  I++S+  L+    +   L    +N+  L G     + + 
Sbjct:    48 CICTVKKNGLDILCETTDLAHITKSMGTLKGKSPIIFYLKLRHNNLPKLQGFVFLALDIR 107

Query:   122 GLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLY 181
              L I +  L  I + A   L + L  L +  N +  VP+ AL  L  +L  L+L+HN++ 
Sbjct:   108 HLTIHNSSLAAIEENALSSLGAGLTQLDVSLNQMKTVPSQALQHLF-HLLILNLNHNKIT 166

Query:   182 KLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVT-LRVLRLQGNRLTVSVVAALQGLR 240
              + N +F+GL +L  L L  NK+  +  +    L   ++ L L GN LT     AL  L 
Sbjct:   167 VIHNNAFEGLETLEILTLYENKITQIDPEAFRGLEDHIKRLNLGGNDLTNIPQKALSILS 226

Query:   241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
             ++  L++  N +   +       L SL  L +AHN  ++V     + L  L SL    N+
Sbjct:   227 TLKKLEIQENKIR-TISEGDFEGLQSLDSLILAHNMITTVPANVFSHLTLLNSLELEGNK 285

Query:   301 IDVLEDHSFRALS-TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
             I V++  +F+ L   L +L L  N+I  +   +L  L  L  LDL +N +  L +D  T 
Sbjct:   286 ISVIDKDAFKGLEENLQYLRLGDNQIHTIPSEALRPLHRLRHLDLRNNNINVLAEDAFTG 345

Query:   360 L-KSLQELRLDDNDISMEPECIYVGFNTMD 388
                SL  L L  NDI + P  ++   N+++
Sbjct:   346 FGDSLTFLNLQKNDIKVLPSLLFENLNSLE 375

GO:0048812 "neuron projection morphogenesis" evidence=IMP

UNIPROTKB|Q1KS52 ALS "Acid-labile subunit" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
 Identities = 91/298 (30%), Positives = 139/298 (46%)

Query:    98 SLLDCTL--SNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
             +L D  L  +++ VLP     G+  L  LV++  +L  +    F GL   L+ L L  N 
Sbjct:   171 NLWDLNLGWNSLAVLPDTAFHGLANLRELVLAGNKLTYLQPALFCGLGE-LRELDLSRNA 229

Query:   155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
             L  V  +    L P L +L L HN L  +   +F G+ +L +LDLS+N++  L +D    
Sbjct:   230 LRSVKANVFVKL-PKLQKLYLDHNLLAAVAPGAFLGMKALRWLDLSHNRVGGLLEDTFPG 288

Query:   215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
             L+ L VLRL  N L        + L  + +L L HN L   L       L  L+VL++  
Sbjct:   289 LLGLHVLRLAHNALASLRPRTFKDLHFLEELQLGHNRLR-QLPEKAFEGLGQLEVLALND 347

Query:   275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
             NQ   ++ GA  GL  +  ++   N +  L +  FR L  L  L L H+ +  V   + A
Sbjct:   348 NQIQEIKAGAFLGLFNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEHSCLGRVGLHTFA 407

Query:   335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELI 392
              LS L  L L  N L A+ +  +  L  L EL L  N ++  P  ++ G   ++  L+
Sbjct:   408 GLSGLRRLFLKDNGLEAIDEQSLWGLAELLELDLTANRLTHLPGRLFQGLGKLEYLLL 465

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NI07 IGFALS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 294 (108.6 bits), Expect = 6.9e-23, P = 6.9e-23
 Identities = 104/377 (27%), Positives = 173/377 (45%)

Query:    68 LPHTLRCTANK-SDLYAISESLRGLEPDERVSLLDCT---LSNV---TVLPGKFLEGVTL 120
             L H L C+  +  +L     +L+G++ +  V L       L+N     + P  F+   +L
Sbjct:   204 LQHQLFCSLTELKELDLSGNALKGIKINIFVKLQKLQKLYLNNNQINAIAPRAFMGMKSL 263

Query:   121 HGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL 180
               L +S   L ++ +  F+GL S L  L L  N ++ +       L   L+ L L HN++
Sbjct:   264 RWLDLSHNRLTSLYEDTFLGLLS-LHVLRLSTNSITSLRPRTFKDLQ-FLEELQLGHNRI 321

Query:   181 YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLR 240
             + L   +F GL  L  L L+ N+L  +       L  + V+ L  N +        +G+ 
Sbjct:   322 WSLAERTFDGLGQLEVLSLNNNQLQDIKAGAFLGLYNVAVMHLSANCIKTLPEYVFEGVT 381

Query:   241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
              +  L L H+ L+  +  +T   L+SL+ L + HN  S++   +   L +L  L   HN+
Sbjct:   382 KLHSLHLEHSCLS-KIRANTFSSLTSLRRLFLQHNAISTIEDQSFRELHELLELDLKHNR 440

Query:   301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
             +  L    F  LS L +L L+ N+I+ +S  + + L  L  LDLSHN L  L   +IT L
Sbjct:   441 LSHLSPQLFVGLSNLEYLFLSFNQIMDISQNTFSPLRRLFWLDLSHNQLATLDNAVITQL 500

Query:   361 KSLQELRLDDNDISMEPECIYVGF--NTMDLELIYSGV--WRHSTLLIPVMLSLCTRS-S 415
              +L+ L L +N +    E   VGF   +  LE ++ G   W H    +  +     R  +
Sbjct:   501 ANLRYLSLRNNSL----ETFSVGFLCPSFTLEQLWLGGNNW-HCNCSLKGLRDFALRHPT 555

Query:   416 VVTRYRYCVVLIEGSNI 432
             VV R+   V   + S++
Sbjct:   556 VVPRFVQSVAEGDDSHV 572

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	694
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.0 bits (179), Expect = 3e-13
 Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 30/251 (11%)

Query: 125 ISSGELKNISDGAFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYKL 183
           +S+ +L           SS L+ L L NN  +  +P  ++    PNL+ LDLS+N L   
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI----PNLETLDLSNNMLSGE 155

Query: 184 ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVT 243
                   SSL  LDL  N L+    + L  L +L  L L  N+L   +   L  ++S+ 
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215

Query: 244 DLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
            + L +N L+G + P  +  L+SL  L + +N  +                      I  
Sbjct: 216 WIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTG--------------------PIPS 254

Query: 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 363
               S   L  L +L L  N++      S+  L  L +LDLS N L     +L+  L++L
Sbjct: 255 ----SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310

Query: 364 QELRLDDNDIS 374
           + L L  N+ +
Sbjct: 311 EILHLFSNNFT 321

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.7 bits (168), Expect = 7e-12
 Identities = 69/240 (28%), Positives = 105/240 (43%), Gaps = 2/240 (0%)

Query: 137 AFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNF 196
             +   + L+ L L +N L       L  +  +L  + L +N L         GL+SLN 
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL 256
           LDL YN L       L  L  L+ L L  N+L+  +  ++  L+ +  LDLS N L+G +
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 257 GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
            P  V +L +L++L +  N F+     AL  L +L  L    N+       +    + L+
Sbjct: 301 -PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
            LDL+ N +       L    NL  L L  N L       +   +SL+ +RL DN  S E
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.0 bits (166), Expect = 1e-11
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 4/198 (2%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           N+L   +P S  A    +L R+ L  N       + F  L  + FLD+S N L       
Sbjct: 390 NSLEGEIPKSLGA--CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
              + +L++L L  N+     +    G + + +LDLS N  +G + P  +  LS L  L 
Sbjct: 448 KWDMPSLQMLSLARNKFF-GGLPDSFGSKRLENLDLSRNQFSGAV-PRKLGSLSELMQLK 505

Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
           ++ N+ S      L+   KL SL   HNQ+      SF  +  LS LDL+ N++      
Sbjct: 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 332 SLAHLSNLTTLDLSHNFL 349
           +L ++ +L  +++SHN L
Sbjct: 566 NLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 64/211 (30%), Positives = 90/211 (42%), Gaps = 8/211 (3%)

Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
           NL  LDLS N L            +L  L L  N L       L    +LR +RLQ N  
Sbjct: 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL--- 285
           +  + +    L  V  LD+S+N L G +  S    + SL++LS+A N+F     G L   
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRIN-SRKWDMPSLQMLSLARNKFF----GGLPDS 471

Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
            G  +L +L    NQ          +LS L  L L+ N++       L+    L +LDLS
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531

Query: 346 HNFLRALTQDLITPLKSLQELRLDDNDISME 376
           HN L        + +  L +L L  N +S E
Sbjct: 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
           NL  LDLS+N+L  + + +FKGL +L  LDLS N L ++S +  + L +LR L L GN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.9 bits (153), Expect = 5e-10
 Identities = 67/220 (30%), Positives = 96/220 (43%), Gaps = 18/220 (8%)

Query: 68  LPHTLRCTANKSDLYAISESLRGLEPD--------ERVSLLDCTLSNVTVLPGKFLEGVT 119
           +P  L  + N   L   S SL G  P          RV L D + S    LP +F +   
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE--LPSEFTKLPL 429

Query: 120 LHGLVISSGELK-NISDGAFIGLSSPLQALGLP-NNLLSVVPTSALAPLAPNLDRLDLSH 177
           ++ L IS+  L+  I+   +   S  LQ L L  N     +P S  +     L+ LDLS 
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPS--LQMLSLARNKFFGGLPDSFGSK---RLENLDLSR 484

Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
           NQ           LS L  L LS NKL     D L+    L  L L  N+L+  + A+  
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
            +  ++ LDLS N L+G + P  +  + SL  ++I+HN  
Sbjct: 545 EMPVLSQLDLSQNQLSGEI-PKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.2 bits (126), Expect = 7e-09
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
           +LK L +++N+ + +  GA  GL  L  L    N +  +   +F  L +L  LDL+ N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 51.8 bits (125), Expect = 8e-09
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
           L  LDL++NR+  +   +   L NL  LDLS N L +++ +  + L SL+ L L  N++
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 57.7 bits (139), Expect = 8e-09
 Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 12/238 (5%)

Query: 156 SVVPTSALAPLAPNLDRLDLSHN--QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLA 213
              P S L  +A N   L+LS N   L     +    L  L+   +S         + L 
Sbjct: 35  LNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLL- 93

Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273
               L  L L  NRL  ++   L  L ++T LDL +N +   + P      S+LK L ++
Sbjct: 94  ---PLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLS 148

Query: 274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333
            N+  S+    L  L  L +L    N +  L       LS L++LDL+ N+I  +    +
Sbjct: 149 DNKIESLPS-PLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKISDLP-PEI 205

Query: 334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLEL 391
             LS L  LDLS+N +  L    ++ LK+L  L L +N +   PE I    N   L+L
Sbjct: 206 ELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 51.8 bits (125), Expect = 1e-08
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
            L SL   +N++ V+ D +F+ L  L  LDL+ N + ++S  + + L +L +LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           L++L L NN L+V+P  A   L PNL  LDLS N L  +   +F GL SL  LDLS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGL-PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.0 bits (132), Expect = 7e-08
 Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 9/212 (4%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
            NL  LDL +N +  +        S+L  LDLS NK+ +L    L  L  L+ L L  N 
Sbjct: 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND 174

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
           L+  +   L  L ++ +LDLS N +     P  +  LS+L+ L +++N    +   +L+ 
Sbjct: 175 LS-DLPKLLSNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSIIEL-LSSLSN 230

Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           L  L+ L   +N++      S   LS L  LDL++N+I ++S  SL  L+NL  LDLS N
Sbjct: 231 LKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSIS--SLGSLTNLRELDLSGN 287

Query: 348 -FLRALTQDLITPLKSLQELRLDDNDISMEPE 378
               AL    +  L     L L     ++E +
Sbjct: 288 SLSNALPLIALLLLLLELLLNLLLTLKALELK 319

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           ++  LDLS+N L   +       L +LKVL ++ N  +S+   A +GL  L SL    N 
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 301 I 301
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 9e-06
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT 206
            LGL N  L     + ++ L  +L  ++LS N +      S   ++SL  LDLSYN    
Sbjct: 422 GLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 207 LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
              + L  L +LR+L L GN L+  V AAL G 
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 71/261 (27%), Positives = 96/261 (36%), Gaps = 55/261 (21%)

Query: 145 LQALGLPNNLLSVVPTSALAPLA---PNLDRLDLSHNQL------YKLENTSFKGLSSLN 195
           LQ L L  N L      ALA      P+L  L LS N+        +           L 
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84

Query: 196 FLDLSYNKL----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ-GLRSV----TDLD 246
            LDLS N L      + +  L    +L+ L+L  N L    +  L  GL+ +      L 
Sbjct: 85  ELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143

Query: 247 LSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
           L  N L G     L    +     LK L++A+N          AG+  L           
Sbjct: 144 LGRNRLEGASCEALA-KALRANRDLKELNLANNGIGD------AGIRALA---------- 186

Query: 303 VLEDHSFRALSTLSHLDLAHNRI-----VAVSGASLAHLSNLTTLDLSHNFLR-----AL 352
                  +A   L  LDL +N +      A++   LA L +L  L+L  N L      AL
Sbjct: 187 ----EGLKANCNLEVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDNNLTDAGAAAL 241

Query: 353 TQDLITPLKSLQELRLDDNDI 373
              L++P  SL  L L  NDI
Sbjct: 242 ASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
            L  L  ++L+ N I      SL  +++L  LDLS+N       + +  L SL+ L L+ 
Sbjct: 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Query: 371 NDIS 374
           N +S
Sbjct: 500 NSLS 503

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 646 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           +LK L +++N+ + +  GA  GL  L  L    N +  +   +FS 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSG 46

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 59/232 (25%), Positives = 86/232 (37%), Gaps = 34/232 (14%)

Query: 74  CTANKSDLYAISESLRGLEPDERVSL----LDCTLSNVTVLPGKFLEGVTLHGLVISSGE 129
            T  +    A++ +LR     + + L           +  L     +G  L  L +S   
Sbjct: 33  NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92

Query: 130 LKNISDGAFIGL--SSPLQALGLPNNLLSVVPT----SALAPLAPNLDRLDLSHNQLYKL 183
           L     G    L  SS LQ L L NN L           L  L P L++L L  N   +L
Sbjct: 93  LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN---RL 149

Query: 184 ENTS-------FKGLSSLNFLDLSYNKLM-----TLSQDCLAPLVTLRVLRLQGNRLT-- 229
           E  S        +    L  L+L+ N +       L++  L     L VL L  N LT  
Sbjct: 150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDE 208

Query: 230 --VSVVAALQGLRSVTDLDLSHNLL----AGPLGPSTVPRLSSLKVLSIAHN 275
              ++   L  L+S+  L+L  N L    A  L  + +    SL  LS++ N
Sbjct: 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 24/171 (14%)

Query: 227 RLTVSVVAALQGLRS---VTDLDLSHNLLAGPLGPSTVPRL---SSLKVLSIAHNQFSS- 279
           R+   + + LQGL     + +LDLS N L GP G   +  L   SSL+ L + +N     
Sbjct: 65  RIPRGLQSLLQGLTKGCGLQELDLSDNAL-GPDGCGVLESLLRSSSLQELKLNNNGLGDR 123

Query: 280 ----VRRGALAGLDKLTSLSCHHNQIDV--LEDHS--FRALSTLSHLDLAHNRI----VA 327
               + +G       L  L    N+++    E  +   RA   L  L+LA+N I    + 
Sbjct: 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183

Query: 328 VSGASLAHLSNLTTLDLSHNFLR----ALTQDLITPLKSLQELRLDDNDIS 374
                L    NL  LDL++N L     +   + +  LKSL+ L L DN+++
Sbjct: 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 681
           L +LKVL ++ N  +S+   A +GL  L SL    N +
Sbjct: 23  LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 69/274 (25%), Positives = 115/274 (41%), Gaps = 56/274 (20%)

Query: 107 VTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPL 166
           +T +P    E +T   L++ + ELK++ +     L   ++ L   +N L+ +P    A L
Sbjct: 190 LTTIPACIPEQITT--LILDNNELKSLPEN----LQGNIKTLYANSNQLTSIP----ATL 239

Query: 167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
              +  ++LS N++ +L     +  S+L  LDL +NK+  L ++    L  L V     N
Sbjct: 240 PDTIQEMELSINRITELPE---RLPSALQSLDLFHNKISCLPENLPEELRYLSVYD---N 293

Query: 227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA 286
            +  ++ A L     +T L++  N L     P T+P    LK L    N  +S+      
Sbjct: 294 SIR-TLPAHLPS--GITHLNVQSNSLTAL--PETLP--PGLKTLEAGENALTSLPASLPP 346

Query: 287 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
              +L  L    NQI VL +       TL                       +TTLD+S 
Sbjct: 347 ---ELQVLDVSKNQITVLPE-------TLP--------------------PTITTLDVSR 376

Query: 347 NFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
           N L  L ++L   L+ +Q  R   N++   PE +
Sbjct: 377 NALTNLPENLPAALQIMQASR---NNLVRLPESL 407

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 218 LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
           L+ + L GN +  ++  +L  + S+  LDLS+N   G + P ++ +L+SL++L++  N  
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLNGNSL 502

Query: 278 SSVRRGALAGL 288
           S     AL G 
Sbjct: 503 SGRVPAALGGR 513

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLS 208
            NL+ LDLS+NQ+  L       L +L  LDLS NK+  LS
Sbjct: 1   TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	694
KOG4194|consensus	873		100.0
KOG4194|consensus	873		99.97
KOG4237|consensus	498		99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG0444|consensus	1255		99.91
KOG0444|consensus	1255		99.89
KOG0472|consensus	565		99.88
KOG4237|consensus	498		99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
KOG0472|consensus	565		99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
KOG0618|consensus	1081		99.78
KOG0618|consensus	1081		99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.62
KOG0617|consensus	264		99.54
KOG0617|consensus	264		99.5
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
KOG0532|consensus	722		99.13
KOG0532|consensus	722		99.11
KOG3207|consensus	505		99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG0531|consensus	414		99.07
KOG1259|consensus	490		99.03
KOG0531|consensus	414		99.03
KOG3207|consensus	505		99.0
KOG1909|consensus	382		98.95
KOG1259|consensus	490		98.93
KOG1909|consensus	382		98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
PLN03150	623	hypothetical protein; Provisional	98.6
PLN03150	623	hypothetical protein; Provisional	98.59
KOG4658|consensus	889		98.58
KOG1859|consensus	1096		98.47
KOG1859|consensus	1096		98.37
KOG4658|consensus	889		98.37
KOG2982|consensus	418		98.29
KOG2982|consensus	418		98.16
KOG4579|consensus	177		98.06
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.05
KOG1644|consensus	233		98.01
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.98
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.77
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.77
KOG2120|consensus	419		97.77
KOG1644|consensus	233		97.75
KOG4579|consensus	177		97.69
KOG2120|consensus	419		97.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.51
PRK15386	426	type III secretion protein GogB; Provisional	97.24
PRK15386	426	type III secretion protein GogB; Provisional	97.22
KOG3665|consensus	699		97.21
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	97.17
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	97.16
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	97.0
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	96.99
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	96.95
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	96.94
KOG3665|consensus	699		96.93
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	96.88
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	96.83
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	96.81
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	96.75
KOG2123|consensus	388		96.71
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	96.71
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	96.71
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	96.66
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	96.65
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	96.65
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	96.65
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	96.64
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	96.63
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	96.61
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	96.6
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	96.54
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	96.52
KOG2739|consensus	260		96.51
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	96.5
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	96.5
KOG2123|consensus	388		96.49
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	96.46
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	96.41
KOG2739|consensus	260		96.38
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	96.34
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	96.33
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	96.31
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	96.25
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	96.19
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	96.14
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	96.12
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	96.12
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	96.09
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	96.07
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	96.05
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	96.02
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	95.99
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	95.97
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	95.91
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	95.85
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	95.8
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	95.78
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	95.77
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	95.76
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	95.71
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	95.69
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	95.69
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	95.69
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	95.63
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	95.6
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	95.58
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	95.57
KOG3513|consensus	1051		95.55
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	95.54
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	95.5
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	95.46
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	95.4
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	95.4
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	95.37
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	95.35
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	95.33
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	95.25
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	95.21
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	95.16
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	95.04
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	95.02
KOG1947|consensus	482		94.99
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	94.95
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	94.93
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	94.92
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	94.81
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	94.75
KOG4341|consensus	483		94.74
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	94.65
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	94.53
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	94.51
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	94.37
PF00047	64	ig: Immunoglobulin domain The Prosite family only	94.34
KOG4308|consensus	478		94.33
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	94.28
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	94.2
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	94.13
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	94.12
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	93.91
KOG1947|consensus	482		93.63
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	93.63
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	93.51
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	93.31
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	93.23
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	93.12
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	93.1
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	93.02
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	92.97
KOG4341|consensus	483		92.9
smart00408	63	IGc2 Immunoglobulin C-2 Type.	92.89
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	92.84
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	92.47
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	92.15
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	92.12
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	91.9
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	91.79
PHA02826	227	IL-1 receptor-like protein; Provisional	91.78
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	91.67
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	91.59
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	91.52
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.32
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	91.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.08
smart00370	26	LRR Leucine-rich repeats, outliers.	91.08
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	91.07
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	90.83
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	90.78
KOG4308|consensus	478		90.56
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	90.4
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	90.25
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	90.23
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	90.17
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	90.14
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	90.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	89.92
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	89.53
smart00370	26	LRR Leucine-rich repeats, outliers.	89.44
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.44
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	88.89
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	88.73
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.59
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	88.16
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.15
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	88.12
smart00409	86	IG Immunoglobulin.	87.96
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	87.96
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	87.51
KOG0473|consensus	326		87.33
KOG4222|consensus	1281		87.12
PHA02826	227	IL-1 receptor-like protein; Provisional	86.79
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	86.47
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	86.37
PHA02633	63	hypothetical protein; Provisional	86.3
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	85.66
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	85.22
PHA02785	326	IL-beta-binding protein; Provisional	85.14
KOG3513|consensus	1051		85.13
PHA03376	221	BARF1; Provisional	85.05
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	83.53
KOG0473|consensus	326		83.53
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	83.15
KOG4221|consensus	1381		82.32
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	81.86
KOG3864|consensus	221		81.46
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	81.19
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	80.96
PHA02785	326	IL-beta-binding protein; Provisional	80.46

>KOG4194|consensus

Probab=100.00  E-value=2.4e-43  Score=378.60  Aligned_cols=408  Identities=24%  Similarity=0.325  Sum_probs=324.9

Q ss_pred             eeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          97 VSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        97 L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      |+.||+|.|.|.++|. .|.+-.++++|+|++|.|+.+..+.|.++. +|..|.|+.|+++.+|...|+++ ++|+.|+|
T Consensus       151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkLsrNrittLp~r~Fk~L-~~L~~LdL  228 (873)
T KOG4194|consen  151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKLSRNRITTLPQRSFKRL-PKLESLDL  228 (873)
T ss_pred             hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc-hheeeecccCcccccCHHHhhhc-chhhhhhc
Confidence            5666777777766654 355667899999999999999999998877 59999999999999999999999 99999999


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      ..|+|..+....|.++++|+.|.|..|.|..+..++|..+.++++|+|..|++......++.+++.|+.|++++|.+.. 
T Consensus       229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-  307 (873)
T KOG4194|consen  229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-  307 (873)
T ss_pred             cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-
Confidence            9999988877889999999999999999999999999999999999999999998888999999999999999999985 


Q ss_pred             CCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccc---cc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG---AS  332 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~---~~  332 (694)
                      +.++.++-.++|++|+|+.|+|++++++.|..+..|++|+|++|.|+.+...+|.++++|+.|||++|.|+....   ..
T Consensus       308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~  387 (873)
T KOG4194|consen  308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA  387 (873)
T ss_pred             eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence            778999999999999999999999999999999999999999999999999999999999999999999987644   46


Q ss_pred             hhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc----------CCCC-CCccccccccccccc
Q psy8879         333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV----------GFNT-MDLELIYSGVWRHST  401 (694)
Q Consensus       333 f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~----------~~Np-CdC~l~~~~~wl~~~  401 (694)
                      |.++++|+.|+|.+|+|+.++..+|..+++|++|||.+|.|..|.+..|.          +.+- |||.+.||..|+...
T Consensus       388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~  467 (873)
T KOG4194|consen  388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRR  467 (873)
T ss_pred             hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhc
Confidence            88999999999999999999999999999999999999999999999887          2222 999999999999643


Q ss_pred             ccCCccCccccCCcccceeeEEEEE-----------------eecCccccceeeeeceeE---------EEEeccCcccc
Q psy8879         402 LLIPVMLSLCTRSSVVTRYRYCVVL-----------------IEGSNILDQSALVLGCSE---------ILALVPTLTSQ  455 (694)
Q Consensus       402 ~~~~~~~~~C~~~~~~~~~~~~~v~-----------------~~~~~~~~~~~~~l~c~~---------i~~l~~~~~~~  455 (694)
                      .........|++|+.-......-+.                 .+......+.-.-+.|.+         +.|...+. ++
T Consensus       468 ~lq~sv~a~CayPe~Lad~~i~svd~~~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dne-vq  546 (873)
T KOG4194|consen  468 KLQSSVIAKCAYPEPLADQSIVSVDTANLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNE-VQ  546 (873)
T ss_pred             ccccceeeeccCCcccccceeEeechhhceecCCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccc-cC
Confidence            3222233344443222111111000                 001111222335566766         55666555 44


Q ss_pred             ccceeEeeeeEEec------------ccEE-EEEEEecCCCcceeEEEEEeeeccceeEEeeccCC
Q psy8879         456 PLSYVTSLRANVTG------------LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCS  508 (694)
Q Consensus       456 ~~~~i~~~~~n~~~------------~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~~~  508 (694)
                      +...+.+.-.-.+.            .+.| ..||+..|+|.|.|+|+|..++.=+-.++-++|..
T Consensus       547 ~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~  612 (873)
T KOG4194|consen  547 PRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQA  612 (873)
T ss_pred             cccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeecc
Confidence            11111111111111            1233 88999999999999999987776555555555544

>KOG4194|consensus

Probab=99.97  E-value=8.4e-33  Score=297.65  Aligned_cols=312  Identities=30%  Similarity=0.475  Sum_probs=205.4

Q ss_pred             CCCCCCCCCCCCCCCCCcEEEccCCCchhhh-hhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCCC
Q psy8879          54 WSCPSIKNDLCACDLPHTLRCTANKSDLYAI-SESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELK  131 (694)
Q Consensus        54 ~~Cp~~~~~~C~C~~~~~v~C~~~~~~l~~i-~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i~  131 (694)
                      ..||.    .|.|.. ..+.|...  .+..+ ...|.+.-|. ..+.||+++|.+..+. ..|.++++|+++++..|.++
T Consensus        44 ~~cpa----~c~c~~-~lldcs~~--~lea~~~~~l~g~lp~-~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt  115 (873)
T KOG4194|consen   44 SECPA----TCPCNT-RLLDCSDR--ELEAIDKSRLKGFLPS-QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT  115 (873)
T ss_pred             ccCCC----cCCCCc-eeeecCcc--ccccccccccCCcCcc-ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh
Confidence            57887    788863 34667553  34433 3345666555 5566777777776553 23445555555555555555


Q ss_pred             CC-----------------------CcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccc
Q psy8879         132 NI-----------------------SDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSF  188 (694)
Q Consensus       132 ~i-----------------------~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f  188 (694)
                      .|                       ....+..++. |+.|||+.|.|+.++...|..- .++++|+|++|.|+.+..+.|
T Consensus       116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a-lrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~It~l~~~~F  193 (873)
T KOG4194|consen  116 RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA-LRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNRITTLETGHF  193 (873)
T ss_pred             hcccccccccceeEEeeeccccccccHHHHHhHhh-hhhhhhhhchhhcccCCCCCCC-CCceEEeeccccccccccccc
Confidence            54                       4444433333 6666666666666666556555 566666666666666666666


Q ss_pred             cCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccc
Q psy8879         189 KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK  268 (694)
Q Consensus       189 ~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~  268 (694)
                      .++.+|..|.|+.|+++.+++..|.++++|+.|+|..|+|...--..|.++++|+.|.|..|.+.. +..+.|..+.+++
T Consensus       194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k-L~DG~Fy~l~kme  272 (873)
T KOG4194|consen  194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK-LDDGAFYGLEKME  272 (873)
T ss_pred             cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc-ccCcceeeecccc
Confidence            666666666666666666666666666666666666666664444556666666666666666654 4466677777777


Q ss_pred             eeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCC
Q psy8879         269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF  348 (694)
Q Consensus       269 ~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~  348 (694)
                      +|+|+.|+++.+..+++.+++.|+.|+|++|.|..+..+.++-.++|+.|+|++|+|+.+++++|..+..|++|+|++|.
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879         349 LRALTQDLITPLKSLQELRLDDNDISME  376 (694)
Q Consensus       349 L~~l~~~~~~~l~~L~~L~Ls~N~L~~l  376 (694)
                      +..+....|..+++|++|||++|.|+..
T Consensus       353 i~~l~e~af~~lssL~~LdLr~N~ls~~  380 (873)
T KOG4194|consen  353 IDHLAEGAFVGLSSLHKLDLRSNELSWC  380 (873)
T ss_pred             hHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence            7777777777777777777777777643

>KOG4237|consensus

Probab=99.97  E-value=3.3e-32  Score=282.52  Aligned_cols=349  Identities=24%  Similarity=0.316  Sum_probs=273.9

Q ss_pred             CCCCCCCCCCCCCCCC--CCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCcc-ccCCCCccEEEccCCC
Q psy8879          53 PWSCPSIKNDLCACDL--PHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGK-FLEGVTLHGLVISSGE  129 (694)
Q Consensus        53 ~~~Cp~~~~~~C~C~~--~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~~-~~~~~~L~~L~Ls~n~  129 (694)
                      ...||.    .|.|+.  ...|.|.+  ..+..+|..|+.     ....+++..|+|+.+|+. |..+.+|+.|+|++|.
T Consensus        34 ~~~CP~----pC~Cs~~~g~~VdCr~--~GL~eVP~~LP~-----~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~  102 (498)
T KOG4237|consen   34 ASACPA----PCTCSDVEGGIVDCRG--KGLTEVPANLPP-----ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN  102 (498)
T ss_pred             cccCCC----CcccCCCCCceEEccC--CCcccCcccCCC-----cceEEEeccCCcccCChhhccchhhhceecccccc
Confidence            346888    899974  35677765  457788877753     677889999999999764 6667889999999999


Q ss_pred             CCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCc
Q psy8879         130 LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ  209 (694)
Q Consensus       130 i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~  209 (694)
                      |+.|.+++|.|+..-++.+.+++|+|+++|.++|.++ ..|+.|.+.-|++.-+..+.|..+++|..|.+.+|.+..+..
T Consensus       103 Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL-~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~  181 (498)
T KOG4237|consen  103 ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL-SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK  181 (498)
T ss_pred             hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH-HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc
Confidence            9999999999987644455555589999999999999 899999999999999988999999999999999999998888


Q ss_pred             cccCCCCCCcEEeccCCccc------------chhhhhhccCcccccccCCCCcCCCCCCCCCCCCc-cccc-eeeccCC
Q psy8879         210 DCLAPLVTLRVLRLQGNRLT------------VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL-SSLK-VLSIAHN  275 (694)
Q Consensus       210 ~~f~~L~~L~~L~Ls~N~l~------------~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l-~~L~-~L~Ls~N  275 (694)
                      ..|..+..++.+.+..|.+-            ...+..+++..-..-..+.+.++.. +++..|... ..+. .+....+
T Consensus       182 ~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q-~~a~kf~c~~esl~s~~~~~d~  260 (498)
T KOG4237|consen  182 GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQ-EDARKFLCSLESLPSRLSSEDF  260 (498)
T ss_pred             ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcc-cchhhhhhhHHhHHHhhccccC
Confidence            88999999999999888732            1223344444444444455555442 334433322 1121 1222333


Q ss_pred             cccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChh
Q psy8879         276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD  355 (694)
Q Consensus       276 ~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~  355 (694)
                      .....|...|.++++|++|+|++|+|+.+.+.+|.+...++.|.|..|+|..+....|.++..|++|+|.+|+|+.+.+.
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence            44455666899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccccCCccCccccCCcccceeeEEEEEee
Q psy8879         356 LITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVTRYRYCVVLIE  428 (694)
Q Consensus       356 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~~~~~~~~C~~~~~~~~~~~~~v~~~  428 (694)
                      .|..+.+|..|+|-.|+|.            |||.+.|+.+|++...  ...+..|+.|.......+..|.+.
T Consensus       341 aF~~~~~l~~l~l~~Np~~------------CnC~l~wl~~Wlr~~~--~~~~~~Cq~p~~~~~~~~~dv~~~  399 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPFN------------CNCRLAWLGEWLRKKS--VVGNPRCQSPGFVRQIPISDVAFG  399 (498)
T ss_pred             cccccceeeeeehccCccc------------CccchHHHHHHHhhCC--CCCCCCCCCCchhccccchhcccc
Confidence            9999999999999999999            9999999999998655  334667887665555444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=5.9e-28  Score=295.33  Aligned_cols=278  Identities=26%  Similarity=0.313  Sum_probs=237.2

Q ss_pred             CCCeeEEEcCCCCCC-CCCcccc-CCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCcc
Q psy8879          94 DERVSLLDCTLSNVT-VLPGKFL-EGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD  171 (694)
Q Consensus        94 ~~~L~~Ldls~n~l~-~lp~~~~-~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~  171 (694)
                      .+.|+.|++++|++. .+|..+. .+.+|++|++++|.+....+.   +.+.+|++|+|++|.+....+..+..+ ++|+
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~  167 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSF-SSLK  167 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcC-CCCC
Confidence            348999999999996 6887766 788999999999988754332   234569999999999986666678888 8999


Q ss_pred             EEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCc
Q psy8879         172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL  251 (694)
Q Consensus       172 ~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~  251 (694)
                      +|+|++|.+.+..+..|.++++|++|+|++|++.+..|..+..+++|++|++++|++.+..|..+.++++|++|++++|.
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            99999999887777888999999999999999988888888999999999999999988888899999999999999999


Q ss_pred             CCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcccccccc
Q psy8879         252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA  331 (694)
Q Consensus       252 l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~  331 (694)
                      +.+.+ |..+.++++|+.|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++|+.|++++|.+.+..+.
T Consensus       248 l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        248 LTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             ecccc-ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence            88755 77788899999999999998877777788889999999999998877777888889999999999999888888


Q ss_pred             chhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879         332 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME  376 (694)
Q Consensus       332 ~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l  376 (694)
                      .+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|++++.
T Consensus       327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~  371 (968)
T PLN00113        327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE  371 (968)
T ss_pred             hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence            888889999999999998877777788888899999998888754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=4.1e-27  Score=287.95  Aligned_cols=275  Identities=26%  Similarity=0.277  Sum_probs=157.6

Q ss_pred             CCeeEEEcCCCCCC-CCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879          95 ERVSLLDCTLSNVT-VLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL  173 (694)
Q Consensus        95 ~~L~~Ldls~n~l~-~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L  173 (694)
                      ++|++|++++|++. .+|.  ..+++|++|++++|.+....+..|..+. +|++|+|++|.+....+..+.++ ++|++|
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L  193 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS-SLKVLDLGGNVLVGKIPNSLTNL-TSLEFL  193 (968)
T ss_pred             CCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCC-CCCEEECccCcccccCChhhhhC-cCCCee
Confidence            46777777777774 3333  2355666777766666644444454433 46666666666655444456666 666666


Q ss_pred             EccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879         174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA  253 (694)
Q Consensus       174 ~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~  253 (694)
                      +|++|.+.+..+..++++++|++|+|++|++.+..|..|..+++|++|++++|.+.+..|..+.++++|++|++++|.+.
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            66666666555556666666666666666666555555666666666666666666556666666666666666666665


Q ss_pred             CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccch
Q psy8879         254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL  333 (694)
Q Consensus       254 ~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f  333 (694)
                      +.+ |..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.++...+..+..+++|+.|++++|++.+..|..+
T Consensus       274 ~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  352 (968)
T PLN00113        274 GPI-PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL  352 (968)
T ss_pred             ccC-chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence            533 4445555566666666665555555555555555555555555555444455555555555555555555445455


Q ss_pred             hcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879         334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       334 ~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~  374 (694)
                      ..+++|+.|+|++|++.+..+..+..+++|+.|++++|++.
T Consensus       353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~  393 (968)
T PLN00113        353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE  393 (968)
T ss_pred             hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence            55555555555555554433333333444444444444433

>KOG0444|consensus

Probab=99.91  E-value=1.2e-26  Score=251.24  Aligned_cols=288  Identities=28%  Similarity=0.406  Sum_probs=152.6

Q ss_pred             CchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCC--CCCcchhcCCCCCccEEEccCCCCC
Q psy8879          79 SDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELK--NISDGAFIGLSSPLQALGLPNNLLS  156 (694)
Q Consensus        79 ~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~--~i~~~~F~~l~~~L~~L~Ls~N~L~  156 (694)
                      +.+..+|+.|..+.   +|+.|.+++|++..+-..+..++.|+.+++.+|+++  .|+++.|.  +..|..||||+|++.
T Consensus        42 t~L~~vPeEL~~lq---kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~--l~dLt~lDLShNqL~  116 (1255)
T KOG0444|consen   42 TKLEQVPEELSRLQ---KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR--LKDLTILDLSHNQLR  116 (1255)
T ss_pred             hhhhhChHHHHHHh---hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc--cccceeeecchhhhh
Confidence            44556666665544   556666666666555555555555666666555554  34444442  223556666666666


Q ss_pred             CCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccch-----
Q psy8879         157 VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS-----  231 (694)
Q Consensus       157 ~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~-----  231 (694)
                      +.|.. +... +++-.|+||+|+|..|+...|-++..|-.|||++|++..++|. +..+..|++|.|++|.+.-.     
T Consensus       117 EvP~~-LE~A-Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQL  193 (1255)
T KOG0444|consen  117 EVPTN-LEYA-KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQL  193 (1255)
T ss_pred             hcchh-hhhh-cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcC
Confidence            55553 3333 5555566666666666555555555555666666665555554 44555555555555555433     


Q ss_pred             --------------------hhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCccc
Q psy8879         232 --------------------VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL  291 (694)
Q Consensus       232 --------------------~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L  291 (694)
                                          +|.++..+.+|..+|++.|.+..  -|+.+-++++|+.|+||+|+|+++.. ......+|
T Consensus       194 PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~l  270 (1255)
T KOG0444|consen  194 PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLNLSGNKITELNM-TEGEWENL  270 (1255)
T ss_pred             ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheeccCcCceeeeec-cHHHHhhh
Confidence                                34444444455555555555542  14444455555555555555554432 12233445


Q ss_pred             ceecccCCccccccchhhhcccccccccCCCCccc--cccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEcc
Q psy8879         292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV--AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD  369 (694)
Q Consensus       292 ~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~--~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls  369 (694)
                      ++|+|+.|+++.+|. ++..++.|+.|.+.+|+++  |+ |..++.+.+|+.+..++|.+.-.| +.+..+..|+.|.|+
T Consensus       271 EtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGi-PSGIGKL~~Levf~aanN~LElVP-EglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  271 ETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGI-PSGIGKLIQLEVFHAANNKLELVP-EGLCRCVKLQKLKLD  347 (1255)
T ss_pred             hhhccccchhccchH-HHhhhHHHHHHHhccCcccccCC-ccchhhhhhhHHHHhhccccccCc-hhhhhhHHHHHhccc
Confidence            555555555554443 4445555555555555542  33 333455555555555555554443 235556666666666


Q ss_pred             CCCCCCCCccc
Q psy8879         370 DNDISMEPECI  380 (694)
Q Consensus       370 ~N~L~~l~~~~  380 (694)
                      .|++..+|..+
T Consensus       348 ~NrLiTLPeaI  358 (1255)
T KOG0444|consen  348 HNRLITLPEAI  358 (1255)
T ss_pred             ccceeechhhh
Confidence            66666666543

>KOG0444|consensus

Probab=99.89  E-value=1.3e-24  Score=235.40  Aligned_cols=273  Identities=27%  Similarity=0.368  Sum_probs=211.7

Q ss_pred             CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      +.|+.||+|+|+++..|..+-.-.++-.|+||+|+|..|+...|..+.. |-.||||+|++..+||. ..++ ..|++|+
T Consensus       103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD-LLfLDLS~NrLe~LPPQ-~RRL-~~LqtL~  179 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD-LLFLDLSNNRLEMLPPQ-IRRL-SMLQTLK  179 (1255)
T ss_pred             ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh-HhhhccccchhhhcCHH-HHHH-hhhhhhh
Confidence            3666777777777777766666666667777777777777666666654 66777777777777764 5556 6677777


Q ss_pred             ccCCCCCCCCcccccCCCCccEEEecCCCCC--CCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC
Q psy8879         175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLM--TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL  252 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~--~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l  252 (694)
                      |++|.+....-..+..+++|+.|.+++.+-+  .+ |.++..+.+|..++++.|.+. ..|+.+.++.+|+.|+|++|.+
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~-Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI-PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI  257 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhcccccchhhcC-CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence            7777665444344445566666677665522  33 445778889999999999998 7899999999999999999999


Q ss_pred             CCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccc--cccchhhhcccccccccCCCCccccccc
Q psy8879         253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFRALSTLSHLDLAHNRIVAVSG  330 (694)
Q Consensus       253 ~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~--~i~~~~f~~l~~L~~L~Ls~N~L~~i~~  330 (694)
                      ++.  ........+|++|+||.|+++.+| .++..+++|+.|.+.+|+++  ++|. .++.+.+|+.+..++|.+.-+ |
T Consensus       258 teL--~~~~~~W~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN~LElV-P  332 (1255)
T KOG0444|consen  258 TEL--NMTEGEWENLETLNLSRNQLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANNKLELV-P  332 (1255)
T ss_pred             eee--eccHHHHhhhhhhccccchhccch-HHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhccccccC-c
Confidence            863  445666789999999999999886 57889999999999999876  5554 678899999999999988766 7


Q ss_pred             cchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       331 ~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      +.+..|.+|+.|.|+.|++-.+|. .+.-++.|++||++.|+=-..|+
T Consensus       333 EglcRC~kL~kL~L~~NrLiTLPe-aIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  333 EGLCRCVKLQKLKLDHNRLITLPE-AIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhhhhHHHHHhcccccceeechh-hhhhcCCcceeeccCCcCccCCC
Confidence            789999999999999999999875 47778999999999997655555

>KOG0472|consensus

Probab=99.88  E-value=8.3e-25  Score=227.73  Aligned_cols=171  Identities=31%  Similarity=0.421  Sum_probs=111.9

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      .++.+|-.+|++.++|+++..+.++..|++.+|+++.++++...  ++.|++||...|.++.+|+. ++.+ .+|+.|+|
T Consensus       138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~N~L~tlP~~-lg~l-~~L~~LyL  213 (565)
T KOG0472|consen  138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA--MKRLKHLDCNSNLLETLPPE-LGGL-ESLELLYL  213 (565)
T ss_pred             hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH--HHHHHhcccchhhhhcCChh-hcch-hhhHHHHh
Confidence            55666777777777777777777777777777777777665443  34477777777777777764 5566 67777777


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      ..|+|..++  .|.++..|++|.++.|+|..++.+....+++|.+|+|++|+++ ..|+.+.-+.+|++||+++|.+++ 
T Consensus       214 ~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-  289 (565)
T KOG0472|consen  214 RRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-  289 (565)
T ss_pred             hhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-
Confidence            777776666  4666666667777666666666666666666667777777666 456666666666666666666664 


Q ss_pred             CCCCCCCCccccceeeccCCc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQ  276 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~  276 (694)
                      + |..++++ .|+.|-+.+|.
T Consensus       290 L-p~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  290 L-PYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             C-Ccccccc-eeeehhhcCCc
Confidence            2 4445555 45555454444

>KOG4237|consensus

Probab=99.87  E-value=4e-24  Score=222.62  Aligned_cols=282  Identities=24%  Similarity=0.351  Sum_probs=231.7

Q ss_pred             eEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccC
Q psy8879          98 SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH  177 (694)
Q Consensus        98 ~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~  177 (694)
                      ..+||++.+++++|..+..  .-..+.|..|.|+.|++++|..+.+ |++|||++|.|+.|.+.+|.++ ++|..|-+-+
T Consensus        49 ~~VdCr~~GL~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~-LRrLdLS~N~Is~I~p~AF~GL-~~l~~Lvlyg  124 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHR-LRRLDLSKNNISFIAPDAFKGL-ASLLSLVLYG  124 (498)
T ss_pred             ceEEccCCCcccCcccCCC--cceEEEeccCCcccCChhhccchhh-hceecccccchhhcChHhhhhh-HhhhHHHhhc
Confidence            3589999999999998764  5678899999999999999988765 9999999999999999999999 7777766555


Q ss_pred             -CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCC
Q psy8879         178 -NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL  256 (694)
Q Consensus       178 -N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i  256 (694)
                       |+|+.++.+.|++|..|+-|.+.-|++.-+..++|..+++|..|.+.+|.+..+....|..+..++.+.+..|.+....
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence             9999999999999999999999999999999999999999999999999998666668999999999999998843211


Q ss_pred             -----------CCCCCCCccccceeeccCCcccccccccccCC-ccc-ceecccCCccccccchhhhcccccccccCCCC
Q psy8879         257 -----------GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL-DKL-TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN  323 (694)
Q Consensus       257 -----------~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L-~~L-~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N  323 (694)
                                 .+..++......-..+.++++..+.+..|... ..+ ..+....+....-|...|+.+++|+.|+|++|
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence                       12223333333344455555655655544322 111 22333444555667788999999999999999


Q ss_pred             ccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879         324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG  383 (694)
Q Consensus       324 ~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~  383 (694)
                      +|+++.+.+|.+...++.|.|..|+|..+...+|.++..|+.|+|.+|+|+.+.+..|+.
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~  344 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT  344 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence            999999999999999999999999999999999999999999999999999777776654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=1.6e-20  Score=218.62  Aligned_cols=268  Identities=25%  Similarity=0.253  Sum_probs=201.7

Q ss_pred             CCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCC
Q psy8879          64 CACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSS  143 (694)
Q Consensus        64 C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~  143 (694)
                      |.+.....+.|...  .+..+|..+.     ..++.|++++|+++.+|..   .++|++|++++|+|+.++.     .+.
T Consensus       198 Cl~~~~~~LdLs~~--~LtsLP~~l~-----~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~-----lp~  262 (788)
T PRK15387        198 CLNNGNAVLNVGES--GLTTLPDCLP-----AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV-----LPP  262 (788)
T ss_pred             HhcCCCcEEEcCCC--CCCcCCcchh-----cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccC-----ccc
Confidence            44444455666543  3445565443     2688899999999988863   4678999999999988864     245


Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL  223 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L  223 (694)
                      +|+.|++++|.++.+|..     +++|+.|++++|+++.++.    .+++|+.|++++|++++++..    ..+|+.|++
T Consensus       263 sL~~L~Ls~N~L~~Lp~l-----p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~L  329 (788)
T PRK15387        263 GLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL----PSELCKLWA  329 (788)
T ss_pred             ccceeeccCCchhhhhhc-----hhhcCEEECcCCccccccc----cccccceeECCCCccccCCCC----ccccccccc
Confidence            689999999998887752     2678889999999988764    346899999999999887541    246888899


Q ss_pred             cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879         224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV  303 (694)
Q Consensus       224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~  303 (694)
                      ++|++++ +|..   ..+|+.|+|++|++.+ + |..   .++|+.|++++|.++.++..    ..+|+.|++++|+|+.
T Consensus       330 s~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-L-P~l---p~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~  396 (788)
T PRK15387        330 YNNQLTS-LPTL---PSGLQELSVSDNQLAS-L-PTL---PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTS  396 (788)
T ss_pred             ccCcccc-cccc---ccccceEecCCCccCC-C-CCC---CcccceehhhccccccCccc----ccccceEEecCCcccC
Confidence            9998875 3431   2478999999999986 4 432   24788889999999887642    3578999999999998


Q ss_pred             ccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccc
Q psy8879         304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIY  381 (694)
Q Consensus       304 i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f  381 (694)
                      ++..    .++|+.|++++|++++++. .   ..+|+.|+|++|+|+.+|.. +..+++|+.|+|++|+|++.....+
T Consensus       397 LP~l----~s~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        397 LPVL----PSELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCc----ccCCCEEEccCCcCCCCCc-c---hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHHHH
Confidence            7752    3679999999999998753 2   35788899999999988765 6778999999999999986655443

>KOG0472|consensus

Probab=99.83  E-value=2.3e-23  Score=217.02  Aligned_cols=272  Identities=28%  Similarity=0.397  Sum_probs=229.2

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      .+..+++++|.+..+.+++..+..+..|++.+|++..+++.  .+-...++.|+.++|++..+|.. ...+ .+|+.++.
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a--ig~l~~l~~l~vs~n~ls~lp~~-i~s~-~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA--IGELEALKSLNVSHNKLSELPEQ-IGSL-ISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH--HHHHHHHHHhhcccchHhhccHH-Hhhh-hhhhhhhc
Confidence            57778899999999888888888999999999999888765  23233488899999999999885 4555 78999999


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      ++|.+..+++ .++.+..|+.|+..+|+++..+++ +..+.+|..|++.+|+++...|.... ++.|+.||...|.+.. 
T Consensus       122 s~n~~~el~~-~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~t-  197 (565)
T KOG0472|consen  122 SSNELKELPD-SIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLET-  197 (565)
T ss_pred             cccceeecCc-hHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhc-
Confidence            9999988875 567788899999999999888766 66678889999999999866666555 8899999999998874 


Q ss_pred             CCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH  335 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~  335 (694)
                      + |..++.+.+|+-|+|..|++..+|  .|.++..|++|+++.|+|..++....+++++|..|||.+|++.+. |..+..
T Consensus       198 l-P~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~cl  273 (565)
T KOG0472|consen  198 L-PPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICL  273 (565)
T ss_pred             C-ChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHH
Confidence            5 667888999999999999999887  588999999999999999999988888999999999999999988 455677


Q ss_pred             ccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccc
Q psy8879         336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIY  381 (694)
Q Consensus       336 l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f  381 (694)
                      +.+|+.||+++|.|+++|+. ++++ +|+.|.+.||++..+-.++.
T Consensus       274 LrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  274 LRSLERLDLSNNDISSLPYS-LGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             hhhhhhhcccCCccccCCcc-cccc-eeeehhhcCCchHHHHHHHH
Confidence            88999999999999999876 7778 89999999999987776664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=6.5e-20  Score=213.54  Aligned_cols=241  Identities=27%  Similarity=0.284  Sum_probs=198.3

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      .-..|||+.++++.+|..+..  +|+.|++.+|+++.++.     .+++|++|++++|+|+.+|..     +++|+.|+|
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~LtsLP~l-----p~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPVL-----PPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchhc--CCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccCcccCc-----ccccceeec
Confidence            456799999999999998764  79999999999999874     246799999999999999852     278999999


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      ++|.++.++.    ...+|+.|++++|+++.++.    ..++|+.|++++|++++. |..   ..+|+.|++++|.+.+ 
T Consensus       270 s~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        270 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             cCCchhhhhh----chhhcCEEECcCCccccccc----cccccceeECCCCccccC-CCC---cccccccccccCcccc-
Confidence            9999988774    23579999999999998864    247899999999999863 432   2468899999999985 


Q ss_pred             CCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH  335 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~  335 (694)
                      + |. +  ..+|+.|+|++|+|+.+++.    .++|+.|++++|.|+.++..    ..+|+.|++++|+|++++..    
T Consensus       337 L-P~-l--p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l----  400 (788)
T PRK15387        337 L-PT-L--PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPVL----  400 (788)
T ss_pred             c-cc-c--ccccceEecCCCccCCCCCC----CcccceehhhccccccCccc----ccccceEEecCCcccCCCCc----
Confidence            4 33 1  25899999999999988652    35789999999999988752    35799999999999987542    


Q ss_pred             ccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccc
Q psy8879         336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIY  381 (694)
Q Consensus       336 l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f  381 (694)
                      .++|+.|++++|+++++|..    ..+|+.|++++|+|+.+|..+.
T Consensus       401 ~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~sl~  442 (788)
T PRK15387        401 PSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPESLI  442 (788)
T ss_pred             ccCCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccccChHHh
Confidence            36899999999999998752    3578899999999999988654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=2.7e-19  Score=209.42  Aligned_cols=247  Identities=26%  Similarity=0.379  Sum_probs=199.2

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      +...|++++++++.+|..+.  ..|+.|++++|+|+.++...+    .+|++|++++|.|+.+|.. +.   .+|+.|+|
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~LtsLP~~-l~---~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLTSIPAT-LP---DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccccCChh-hh---ccccEEEC
Confidence            56789999999999998764  479999999999999987544    4699999999999999874 22   67999999


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      ++|++..++.. +.  .+|+.|++++|+++.++.. +.  ++|+.|++++|+++. +|..+.  ++|+.|++++|.+.. 
T Consensus       249 s~N~L~~LP~~-l~--s~L~~L~Ls~N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRITELPER-LP--SALQSLDLFHNKISCLPEN-LP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccCcCChh-Hh--CCCCEEECcCCccCccccc-cC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence            99999988754 32  5799999999999987553 32  589999999999985 444332  479999999999985 


Q ss_pred             CCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH  335 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~  335 (694)
                      + |..+  .++|+.|++++|.++.++.. +  .++|+.|++++|+|+.++.. +  .++|+.|+|++|+++.+++. +. 
T Consensus       319 L-P~~l--~~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~L~~LP~~-l--p~~L~~LdLs~N~Lt~LP~~-l~-  387 (754)
T PRK15370        319 L-PETL--PPGLKTLEAGENALTSLPAS-L--PPELQVLDVSKNQITVLPET-L--PPTITTLDVSRNALTNLPEN-LP-  387 (754)
T ss_pred             C-Cccc--cccceeccccCCccccCChh-h--cCcccEEECCCCCCCcCChh-h--cCCcCEEECCCCcCCCCCHh-HH-
Confidence            4 4333  26899999999999987643 3  26899999999999987753 3  36899999999999988654 33 


Q ss_pred             ccccCeeecCCCCCCCcChh---hhCCCCCCCEEEccCCCCC
Q psy8879         336 LSNLTTLDLSHNFLRALTQD---LITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       336 l~~L~~L~Ls~N~L~~l~~~---~~~~l~~L~~L~Ls~N~L~  374 (694)
                       ..|+.|++++|++..+|..   .+..++++..|++.+|+|+
T Consensus       388 -~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             3699999999999988753   3445688999999999987

>KOG0618|consensus

Probab=99.78  E-value=8e-21  Score=215.33  Aligned_cols=269  Identities=28%  Similarity=0.321  Sum_probs=138.4

Q ss_pred             CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      ..++++|+++|++..+|+.+..+.+|+.+...+|.+..++...|..  .+|+.|.+..|.++.+|+. ..++ +.|++|+
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~--~~L~~l~~~~nel~yip~~-le~~-~sL~tLd  316 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRI--TSLVSLSAAYNELEYIPPF-LEGL-KSLRTLD  316 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhh--hhHHHHHhhhhhhhhCCCc-cccc-ceeeeee
Confidence            3555555555555555555555555555555555555554443321  2355555555555555552 3334 5555555


Q ss_pred             ccCCCCCCCCcccccCCCC-ccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879         175 LSHNQLYKLENTSFKGLSS-LNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA  253 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~~L~~-L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~  253 (694)
                      |..|+|...++..|.-+.. |+.|+.+.|.+...+...=..++.|+.|++.+|.++...-..+.+..+|+.|+|++|++.
T Consensus       317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            5555555555544433333 455555555555444322223344555555555555555555555555555555555554


Q ss_pred             CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccch
Q psy8879         254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL  333 (694)
Q Consensus       254 ~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f  333 (694)
                      . ++...+.+++.|++|+||+|+++.++ ....++..|++|...+|+|..+|  .+..++.|+.+|++.|+|+.+.-...
T Consensus       397 ~-fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  397 S-FPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             c-CCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhh
Confidence            3 33444555555555555555555554 34455555555555555555555  34555555555555555554432222


Q ss_pred             hcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCC
Q psy8879         334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN  371 (694)
Q Consensus       334 ~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N  371 (694)
                      ...++|++|||++|.-..+....|..++++...+++-|
T Consensus       473 ~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            22255555555555544444444444455555544444

>KOG0618|consensus

Probab=99.76  E-value=6.5e-20  Score=208.05  Aligned_cols=273  Identities=27%  Similarity=0.339  Sum_probs=200.7

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      .++.+.|..|++..+-   ...++|+.|+.++|.+..+..   ...+.+|++++++.|+++.+| .....+ .+|+.|+.
T Consensus       200 ~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~~lp-~wi~~~-~nle~l~~  271 (1081)
T KOG0618|consen  200 NLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLSNLP-EWIGAC-ANLEALNA  271 (1081)
T ss_pred             chhhhhhhhcccceEE---ecCcchheeeeccCcceeecc---ccccccceeeecchhhhhcch-HHHHhc-ccceEecc
Confidence            5666777777766552   234567777777777774433   233456777777777777777 556666 77777777


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhh-------------------
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAAL-------------------  236 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~-------------------  236 (694)
                      .+|.+..++. .+....+|+.|....|.++.+++. ..++..|++|+|..|++....+..|                   
T Consensus       272 n~N~l~~lp~-ri~~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~  349 (1081)
T KOG0618|consen  272 NHNRLVALPL-RISRITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST  349 (1081)
T ss_pred             cchhHHhhHH-HHhhhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence            7777766653 334456666666666666666553 4456666666666666653221111                   


Q ss_pred             ------ccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhh
Q psy8879         237 ------QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR  310 (694)
Q Consensus       237 ------~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~  310 (694)
                            ...+.|+.|++.+|.+++.+ ...+.+.++|+.|+|++|++..++...+.+++.|++|+|++|+++.++ ....
T Consensus       350 lp~~~e~~~~~Lq~LylanN~Ltd~c-~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva  427 (1081)
T KOG0618|consen  350 LPSYEENNHAALQELYLANNHLTDSC-FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVA  427 (1081)
T ss_pred             cccccchhhHHHHHHHHhcCcccccc-hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHH
Confidence                  12346888999999998765 445778899999999999999999999999999999999999999998 5788


Q ss_pred             cccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc
Q psy8879         311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV  382 (694)
Q Consensus       311 ~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~  382 (694)
                      .++.|+.|...+|+|...+  .+..++.|+.+|++.|+|+.+.-..-.+-++|++||++||....++.+.|.
T Consensus       428 ~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~  497 (1081)
T KOG0618|consen  428 NLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLK  497 (1081)
T ss_pred             hhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhH
Confidence            8999999999999999986  678899999999999999876543333448999999999997666655544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=6.2e-18  Score=198.01  Aligned_cols=239  Identities=23%  Similarity=0.351  Sum_probs=189.8

Q ss_pred             CchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCC
Q psy8879          79 SDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV  158 (694)
Q Consensus        79 ~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~l  158 (694)
                      ..+..+|..+.     ..++.|++++|+++.+|..+.  .+|++|++++|.++.++..    ++.+|+.|+|++|.+..+
T Consensus       188 ~~LtsLP~~Ip-----~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~----l~~~L~~L~Ls~N~L~~L  256 (754)
T PRK15370        188 LGLTTIPACIP-----EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPAT----LPDTIQEMELSINRITEL  256 (754)
T ss_pred             CCcCcCCcccc-----cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChh----hhccccEEECcCCccCcC
Confidence            34555555432     379999999999999998775  4899999999999988753    234699999999999999


Q ss_pred             CccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhcc
Q psy8879         159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG  238 (694)
Q Consensus       159 p~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~  238 (694)
                      |.. +.   ++|++|++++|+|+.++.. +.  ++|+.|++++|+++.++.. +.  ++|+.|++++|+++. +|..+. 
T Consensus       257 P~~-l~---s~L~~L~Ls~N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~-LP~~l~-  324 (754)
T PRK15370        257 PER-LP---SALQSLDLFHNKISCLPEN-LP--EELRYLSVYDNSIRTLPAH-LP--SGITHLNVQSNSLTA-LPETLP-  324 (754)
T ss_pred             Chh-Hh---CCCCEEECcCCccCccccc-cC--CCCcEEECCCCccccCccc-ch--hhHHHHHhcCCcccc-CCcccc-
Confidence            874 32   6799999999999987653 32  5899999999999988653 22  479999999999985 444332 


Q ss_pred             CcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccc
Q psy8879         239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL  318 (694)
Q Consensus       239 L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L  318 (694)
                       ++|+.|++++|.+++ + |..+.  ++|+.|++++|+++.++.. +  .++|++|++++|+++.+++...   ..|+.|
T Consensus       325 -~sL~~L~Ls~N~Lt~-L-P~~l~--~sL~~L~Ls~N~L~~LP~~-l--p~~L~~LdLs~N~Lt~LP~~l~---~sL~~L  393 (754)
T PRK15370        325 -PGLKTLEAGENALTS-L-PASLP--PELQVLDVSKNQITVLPET-L--PPTITTLDVSRNALTNLPENLP---AALQIM  393 (754)
T ss_pred             -ccceeccccCCcccc-C-Chhhc--CcccEEECCCCCCCcCChh-h--cCCcCEEECCCCcCCCCCHhHH---HHHHHH
Confidence             689999999999986 5 44443  6999999999999987643 3  3689999999999999887532   479999


Q ss_pred             cCCCCcccccccc---chhcccccCeeecCCCCCCC
Q psy8879         319 DLAHNRIVAVSGA---SLAHLSNLTTLDLSHNFLRA  351 (694)
Q Consensus       319 ~Ls~N~L~~i~~~---~f~~l~~L~~L~Ls~N~L~~  351 (694)
                      ++++|++..++..   .+..++.+..|+|.+|.+..
T Consensus       394 dLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        394 QASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             hhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            9999999987432   23445889999999999874

>PLN03210 Resistant to P

Probab=99.72  E-value=1.7e-16  Score=196.78  Aligned_cols=264  Identities=23%  Similarity=0.279  Sum_probs=158.4

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCC-CCCCCCccccccCCCCccEEE
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN-LLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N-~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      .|+.|++.++.+..+|..+ ...+|++|+++++.+..++.+ + ..+.+|+.|+|+++ .++.+|.  +..+ ++|++|+
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-~-~~l~~Lk~L~Ls~~~~l~~ip~--ls~l-~~Le~L~  663 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG-V-HSLTGLRNIDLRGSKNLKEIPD--LSMA-TNLETLK  663 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc-c-ccCCCCCEEECCCCCCcCcCCc--cccC-CcccEEE
Confidence            5777777777777777766 456777777777777776554 2 22345777777765 3566654  5556 7777777


Q ss_pred             ccCCC-CCCCCcccccCCCCccEEEecCCC-CCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC
Q psy8879         175 LSHNQ-LYKLENTSFKGLSSLNFLDLSYNK-LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL  252 (694)
Q Consensus       175 Ls~N~-L~~i~~~~f~~L~~L~~L~Ls~N~-l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l  252 (694)
                      |++|. +..+ +..+.++++|+.|++++|. +..++.. + ++++|+.|++++|......|..   ..+|++|++++|.+
T Consensus       664 L~~c~~L~~l-p~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i  737 (1153)
T PLN03210        664 LSDCSSLVEL-PSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI  737 (1153)
T ss_pred             ecCCCCcccc-chhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence            77764 3333 3466777777777777753 4454433 2 5667777777776544333332   24566666666665


Q ss_pred             CCCCCCCCC------------------------------CCccccceeeccCCcccccccccccCCcccceecccCC-cc
Q psy8879         253 AGPLGPSTV------------------------------PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN-QI  301 (694)
Q Consensus       253 ~~~i~p~~~------------------------------~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N-~L  301 (694)
                      .. + |..+                              ...++|+.|+|++|......|..+.++++|+.|++++| .+
T Consensus       738 ~~-l-P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L  815 (1153)
T PLN03210        738 EE-F-PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL  815 (1153)
T ss_pred             cc-c-cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence            43 2 2111                              11245666666666443333445666677777777665 35


Q ss_pred             ccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccC-CCCCCCCcc
Q psy8879         302 DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD-NDISMEPEC  379 (694)
Q Consensus       302 ~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~-N~L~~l~~~  379 (694)
                      ..++...  .+++|+.|++++|......|.   ...+|+.|+|++|.++.+|. .+..+++|+.|++++ |+++.+|..
T Consensus       816 ~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~-si~~l~~L~~L~L~~C~~L~~l~~~  888 (1153)
T PLN03210        816 ETLPTGI--NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPW-WIEKFSNLSFLDMNGCNNLQRVSLN  888 (1153)
T ss_pred             CeeCCCC--CccccCEEECCCCCccccccc---cccccCEeECCCCCCccChH-HHhcCCCCCEEECCCCCCcCccCcc
Confidence            5554432  466677777766543222222   12567777777777777654 366677777777776 556666654

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.66  E-value=2.2e-15  Score=186.84  Aligned_cols=259  Identities=25%  Similarity=0.285  Sum_probs=195.3

Q ss_pred             CCCeeEEEcCCCCCCCCCccccCCCCccEEEccCC-CCCCCCcchhcCCCCCccEEEccCCC-CCCCCccccccCCCCcc
Q psy8879          94 DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSG-ELKNISDGAFIGLSSPLQALGLPNNL-LSVVPTSALAPLAPNLD  171 (694)
Q Consensus        94 ~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n-~i~~i~~~~F~~l~~~L~~L~Ls~N~-L~~lp~~~~~~l~~~L~  171 (694)
                      .++|..|+++++.+..++..+..+++|+.|+++++ .++.++.  +.. .++|+.|+|++|. +..+|. .+..+ ++|+
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~-l~~Le~L~L~~c~~L~~lp~-si~~L-~~L~  684 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSM-ATNLETLKLSDCSSLVELPS-SIQYL-NKLE  684 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--ccc-CCcccEEEecCCCCccccch-hhhcc-CCCC
Confidence            35899999999999999999999999999999875 4666654  333 4569999999874 666765 57888 8999


Q ss_pred             EEEccCC-CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhh---------------
Q psy8879         172 RLDLSHN-QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAA---------------  235 (694)
Q Consensus       172 ~L~Ls~N-~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~---------------  235 (694)
                      .|++++| .++.++.. + ++++|+.|++++|......|.   ...+|++|++++|.+.. +|..               
T Consensus       685 ~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~  758 (1153)
T PLN03210        685 DLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMK  758 (1153)
T ss_pred             EEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccccccccccccccccc
Confidence            9999986 56666643 2 678888888888764333332   23467777777777653 2221               


Q ss_pred             ---------------hccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCC-cccccccccccCCcccceecccCC
Q psy8879         236 ---------------LQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN-QFSSVRRGALAGLDKLTSLSCHHN  299 (694)
Q Consensus       236 ---------------~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N-~L~~i~~~~~~~L~~L~~L~Ls~N  299 (694)
                                     +...++|+.|++++|...+.+ |..+.++++|+.|++++| .+..++.. . ++++|+.|++++|
T Consensus       759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGC  835 (1153)
T ss_pred             hhhccccccccchhhhhccccchheeCCCCCCcccc-ChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCC
Confidence                           112357888888888766656 777999999999999987 46666543 3 7899999999997


Q ss_pred             c-cccccchhhhcccccccccCCCCccccccccchhcccccCeeecCC-CCCCCcChhhhCCCCCCCEEEccCCC
Q psy8879         300 Q-IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-NFLRALTQDLITPLKSLQELRLDDND  372 (694)
Q Consensus       300 ~-L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~-N~L~~l~~~~~~~l~~L~~L~Ls~N~  372 (694)
                      . +..++.    ..++|+.|+|++|.++.+ |.++..+++|+.|+|++ |++..++.. +..+++|+.+++++|.
T Consensus       836 ~~L~~~p~----~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~~-~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        836 SRLRTFPD----ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLN-ISKLKHLETVDFSDCG  904 (1153)
T ss_pred             Cccccccc----cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCcc-cccccCCCeeecCCCc
Confidence            4 444432    236899999999999987 56788999999999998 677877654 5678899999998874

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=1.4e-17  Score=177.44  Aligned_cols=259  Identities=24%  Similarity=0.242  Sum_probs=146.9

Q ss_pred             ccCCCCccEEEccCCCCCCCCcchh---cCCCCCccEEEccCCCCCCCC------ccccccCCCCccEEEccCCCCCCCC
Q psy8879         114 FLEGVTLHGLVISSGELKNISDGAF---IGLSSPLQALGLPNNLLSVVP------TSALAPLAPNLDRLDLSHNQLYKLE  184 (694)
Q Consensus       114 ~~~~~~L~~L~Ls~n~i~~i~~~~F---~~l~~~L~~L~Ls~N~L~~lp------~~~~~~l~~~L~~L~Ls~N~L~~i~  184 (694)
                      +.....|+.|+++++.++......+   ....++|++|+++++.+...+      ...+..+ ++|++|++++|.+....
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-CGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-CceeEEEccCCCCChhH
Confidence            3444556667776666643221111   112233677777766655311      1234455 67777777777776544


Q ss_pred             cccccCCCC---ccEEEecCCCCCCCC----ccccCCC-CCCcEEeccCCcccch----hhhhhccCcccccccCCCCcC
Q psy8879         185 NTSFKGLSS---LNFLDLSYNKLMTLS----QDCLAPL-VTLRVLRLQGNRLTVS----VVAALQGLRSVTDLDLSHNLL  252 (694)
Q Consensus       185 ~~~f~~L~~---L~~L~Ls~N~l~~i~----~~~f~~L-~~L~~L~Ls~N~l~~~----~~~~~~~L~~L~~L~Ls~N~l  252 (694)
                      +..+..+.+   |++|++++|++.+..    ...+..+ ++|++|++++|.+++.    ....+..+.+|++|++++|.+
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence            444444443   777777777766321    1234455 6777777777777632    233455566777777777776


Q ss_pred             CCCCC---CCCCCCccccceeeccCCccccccc----ccccCCcccceecccCCccccccchhhhc-----ccccccccC
Q psy8879         253 AGPLG---PSTVPRLSSLKVLSIAHNQFSSVRR----GALAGLDKLTSLSCHHNQIDVLEDHSFRA-----LSTLSHLDL  320 (694)
Q Consensus       253 ~~~i~---p~~~~~l~~L~~L~Ls~N~L~~i~~----~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~-----l~~L~~L~L  320 (694)
                      .+...   +..+..+++|+.|++++|.+++...    ..+..+++|++|++++|.++......+..     .+.|+.|++
T Consensus       178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l  257 (319)
T cd00116         178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL  257 (319)
T ss_pred             chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence            63110   1123334577777777777664322    23455667777777777776432222221     257777777


Q ss_pred             CCCccccccc----cchhcccccCeeecCCCCCCCcCh----hhhCCC-CCCCEEEccCCCC
Q psy8879         321 AHNRIVAVSG----ASLAHLSNLTTLDLSHNFLRALTQ----DLITPL-KSLQELRLDDNDI  373 (694)
Q Consensus       321 s~N~L~~i~~----~~f~~l~~L~~L~Ls~N~L~~l~~----~~~~~l-~~L~~L~Ls~N~L  373 (694)
                      ++|.++....    ..+..+++|+.+++++|.+..-+.    ..+... +.|+.+++.+|+|
T Consensus       258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            7777763221    234455677777888777775432    233333 5677777777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.62  E-value=7.9e-17  Score=171.76  Aligned_cols=257  Identities=27%  Similarity=0.273  Sum_probs=185.1

Q ss_pred             EEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCC----ccccccCCCCccEEEccCCCCCCC------CcccccCC
Q psy8879         122 GLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP----TSALAPLAPNLDRLDLSHNQLYKL------ENTSFKGL  191 (694)
Q Consensus       122 ~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp----~~~~~~l~~~L~~L~Ls~N~L~~i------~~~~f~~L  191 (694)
                      .|+|+.+.++.-....+.....+|+.|+++++.++...    ...+... +.|++|+++++.+...      .+..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhC-CCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            46666676663332222233345999999999985421    1234455 7799999999988631      12456778


Q ss_pred             CCccEEEecCCCCCCCCccccCCCCC---CcEEeccCCcccc----hhhhhhccC-cccccccCCCCcCCCCCC---CCC
Q psy8879         192 SSLNFLDLSYNKLMTLSQDCLAPLVT---LRVLRLQGNRLTV----SVVAALQGL-RSVTDLDLSHNLLAGPLG---PST  260 (694)
Q Consensus       192 ~~L~~L~Ls~N~l~~i~~~~f~~L~~---L~~L~Ls~N~l~~----~~~~~~~~L-~~L~~L~Ls~N~l~~~i~---p~~  260 (694)
                      ++|++|++++|.+....+..+..+.+   |++|++++|++.+    .+...+..+ ++|+.|++++|.+.+...   ...
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            99999999999998666655555555   9999999999874    233456667 899999999999884210   234


Q ss_pred             CCCccccceeeccCCcccccc----cccccCCcccceecccCCccccccc----hhhhcccccccccCCCCccccccccc
Q psy8879         261 VPRLSSLKVLSIAHNQFSSVR----RGALAGLDKLTSLSCHHNQIDVLED----HSFRALSTLSHLDLAHNRIVAVSGAS  332 (694)
Q Consensus       261 ~~~l~~L~~L~Ls~N~L~~i~----~~~~~~L~~L~~L~Ls~N~L~~i~~----~~f~~l~~L~~L~Ls~N~L~~i~~~~  332 (694)
                      +..+++|++|++++|.+++..    ...+..+++|++|++++|.++....    ..+..+++|++|++++|.+++.....
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            556778999999999998421    2234556799999999999875443    34556788999999999998754444


Q ss_pred             hhc-----ccccCeeecCCCCCCCcC----hhhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879         333 LAH-----LSNLTTLDLSHNFLRALT----QDLITPLKSLQELRLDDNDISMEPEC  379 (694)
Q Consensus       333 f~~-----l~~L~~L~Ls~N~L~~l~----~~~~~~l~~L~~L~Ls~N~L~~l~~~  379 (694)
                      +..     .+.|+.|++++|.++...    ...+..+++|+.+++++|+++..+..
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~  296 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ  296 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence            332     379999999999997322    23456678999999999999865543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.54  E-value=3.5e-16  Score=147.18  Aligned_cols=158  Identities=27%  Similarity=0.396  Sum_probs=97.8

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccC
Q psy8879         168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL  247 (694)
Q Consensus       168 ~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~L  247 (694)
                      .+++.|.||+|+++.++| .+..+.+|+.|++++|+|+.++.. ++.+++|+.|++.-|++. ..|..|+.++.|+.|||
T Consensus        33 s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            566666777777766665 356666777777777777766544 666777777777777665 56666777777777777


Q ss_pred             CCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcccc
Q psy8879         248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA  327 (694)
Q Consensus       248 s~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~  327 (694)
                      .+|++.+..-|..|..+..|+.|+|++|.+.-+++ ..+++++|+.|.+.+|.+-.++. .++.++.|++|.+.+|+++-
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpk-eig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhcccceeee
Confidence            77766655445556566666666666666655543 35556666666666665555543 34455555555555555554


Q ss_pred             ccc
Q psy8879         328 VSG  330 (694)
Q Consensus       328 i~~  330 (694)
                      ++|
T Consensus       188 lpp  190 (264)
T KOG0617|consen  188 LPP  190 (264)
T ss_pred             cCh
Confidence            443

>KOG0617|consensus

Probab=99.50  E-value=1.1e-15  Score=143.78  Aligned_cols=161  Identities=24%  Similarity=0.373  Sum_probs=138.3

Q ss_pred             cCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccc
Q psy8879         189 KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK  268 (694)
Q Consensus       189 ~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~  268 (694)
                      -++.+.+.|.|++|+++.++|+ +..+.+|+.|++.+|+++ ..|..++.+++|+.|+++.|++.  +.|..|+.+|.|+
T Consensus        30 f~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~le  105 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALE  105 (264)
T ss_pred             cchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCchhh
Confidence            3567788899999999999887 788999999999999998 67888999999999999999997  3488999999999


Q ss_pred             eeeccCCcccc-cccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCC
Q psy8879         269 VLSIAHNQFSS-VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN  347 (694)
Q Consensus       269 ~L~Ls~N~L~~-i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N  347 (694)
                      .|||..|++.+ ..|+.|..+..|+.|+|++|.+..+++ ..+.+++|+.|.+.+|.+-.+ |..++.+..|+.|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccc
Confidence            99999998875 457778888899999999999888877 467888899999988888887 556788888888888888


Q ss_pred             CCCCcChh
Q psy8879         348 FLRALTQD  355 (694)
Q Consensus       348 ~L~~l~~~  355 (694)
                      +++-+||+
T Consensus       184 rl~vlppe  191 (264)
T KOG0617|consen  184 RLTVLPPE  191 (264)
T ss_pred             eeeecChh
Confidence            88888876

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.19  E-value=3.3e-11  Score=133.10  Aligned_cols=179  Identities=30%  Similarity=0.455  Sum_probs=113.6

Q ss_pred             CccEEEccCCCCCCCCccccccCCC-CccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEe
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAP-NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLR  222 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~-~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~  222 (694)
                      .++.|++.+|.++.+++..  .... +|+.|++++|.+..++ ..++.+++|+.|++++|++..+++. ....++|+.|+
T Consensus       117 ~l~~L~l~~n~i~~i~~~~--~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~  192 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLI--GLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLD  192 (394)
T ss_pred             ceeEEecCCcccccCcccc--ccchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhh-hhhhhhhhhee
Confidence            4677777777777766632  2212 6777777777776664 2356667777777777777766553 22556677777


Q ss_pred             ccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccc
Q psy8879         223 LQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID  302 (694)
Q Consensus       223 Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~  302 (694)
                      +++|++.. +|........|++|.+++|.+...  +..+..+.++..+.+.+|++..+ +..+.++++++.|++++|.++
T Consensus       193 ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~--~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         193 LSGNKISD-LPPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             ccCCcccc-CchhhhhhhhhhhhhhcCCcceec--chhhhhcccccccccCCceeeec-cchhccccccceecccccccc
Confidence            77777763 344334445577777777743321  44566666777777777776654 234566667777777777777


Q ss_pred             cccchhhhcccccccccCCCCccccccccc
Q psy8879         303 VLEDHSFRALSTLSHLDLAHNRIVAVSGAS  332 (694)
Q Consensus       303 ~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~  332 (694)
                      .++.  +..+.+|+.|++++|.+..+.+..
T Consensus       269 ~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         269 SISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cccc--ccccCccCEEeccCccccccchhh
Confidence            7765  666777777777777776665543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=6e-11  Score=130.99  Aligned_cols=186  Identities=32%  Similarity=0.452  Sum_probs=115.8

Q ss_pred             CCCCccEEEecCCCCCCCCccccCCC-CCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccc
Q psy8879         190 GLSSLNFLDLSYNKLMTLSQDCLAPL-VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK  268 (694)
Q Consensus       190 ~L~~L~~L~Ls~N~l~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~  268 (694)
                      .++.++.|++.+|.++.+++. ...+ ++|+.|++++|++. .++..+..+++|+.|++++|++.. + +......++|+
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l-~~~~~~~~~L~  189 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-L-PKLLSNLSNLN  189 (394)
T ss_pred             cccceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-h-hhhhhhhhhhh
Confidence            334555555555555555443 2223 25666666666655 233455566666666666666664 2 33333566777


Q ss_pred             eeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCC
Q psy8879         269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF  348 (694)
Q Consensus       269 ~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~  348 (694)
                      .|++++|++..++.. ......|++|.+++|.+...+. .+..+.++..|.+.+|++..+ +..+..+++++.|++++|.
T Consensus       190 ~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~-~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         190 NLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             heeccCCccccCchh-hhhhhhhhhhhhcCCcceecch-hhhhcccccccccCCceeeec-cchhccccccceecccccc
Confidence            777777777776543 2234457777777775333332 466677777777777777664 4456677778888888888


Q ss_pred             CCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCC
Q psy8879         349 LRALTQDLITPLKSLQELRLDDNDISMEPECIYVGF  384 (694)
Q Consensus       349 L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~  384 (694)
                      ++.++.  +..+.+++.|++++|.+..+++......
T Consensus       267 i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~~  300 (394)
T COG4886         267 ISSISS--LGSLTNLRELDLSGNSLSNALPLIALLL  300 (394)
T ss_pred             cccccc--ccccCccCEEeccCccccccchhhhccc
Confidence            887776  6677788888888888777666555443

>KOG0532|consensus

Probab=99.13  E-value=5e-12  Score=138.06  Aligned_cols=199  Identities=26%  Similarity=0.321  Sum_probs=121.4

Q ss_pred             EEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCC
Q psy8879         147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN  226 (694)
Q Consensus       147 ~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N  226 (694)
                      +|.|++-+++.+|..++..-...-...||+.|++..++. .+..+..|+.+.|..|.+..++. .+.++..|.+|+|+.|
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~N  131 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPE-EACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSN  131 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCch-HHHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccc
Confidence            456777777777766554222445567777777777663 44555667777777777766643 3666667777777777


Q ss_pred             cccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccc
Q psy8879         227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED  306 (694)
Q Consensus       227 ~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~  306 (694)
                      ++. ..|..+..++ |+.|-+++|+++. + |..++.++.|..||.+.|++..+++. +.++.+|+.|.+..|++..+++
T Consensus       132 qlS-~lp~~lC~lp-Lkvli~sNNkl~~-l-p~~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~lp~  206 (722)
T KOG0532|consen  132 QLS-HLPDGLCDLP-LKVLIVSNNKLTS-L-PEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPE  206 (722)
T ss_pred             hhh-cCChhhhcCc-ceeEEEecCcccc-C-CcccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhCCH
Confidence            766 3444444443 6666666666663 3 55555666666666666666666543 5566666666666666666655


Q ss_pred             hhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChh
Q psy8879         307 HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD  355 (694)
Q Consensus       307 ~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~  355 (694)
                      .. ..++ |..||+|.|+++.+ |..|.+|..|++|.|.+|.+.+-|..
T Consensus       207 El-~~Lp-Li~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  207 EL-CSLP-LIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             HH-hCCc-eeeeecccCceeec-chhhhhhhhheeeeeccCCCCCChHH
Confidence            32 2332 56666666666665 34456666666666666666655543

>KOG0532|consensus

Probab=99.11  E-value=3.4e-12  Score=139.36  Aligned_cols=216  Identities=28%  Similarity=0.351  Sum_probs=175.2

Q ss_pred             EEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecC
Q psy8879         122 GLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY  201 (694)
Q Consensus       122 ~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~  201 (694)
                      .|.|++-.++..+..++..-+..-...+|+.|++..+|.. +..+ ..|+.+.|..|.+..++ ..+.++..|++|+|+.
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f-~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAF-VSLESLILYHNCIRTIP-EAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHH-HHHHHHHHHhccceecc-hhhhhhhHHHHhhhcc
Confidence            3566777777777666664344477889999999999985 5555 78999999999998887 5789999999999999


Q ss_pred             CCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccc
Q psy8879         202 NKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVR  281 (694)
Q Consensus       202 N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~  281 (694)
                      |+++.++.+ +..++ |+.|.+++|+++ .+|..++.+..|..|+.+.|.+.. + |..+..+.+|+.|.+..|++..++
T Consensus       131 NqlS~lp~~-lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-l-psql~~l~slr~l~vrRn~l~~lp  205 (722)
T KOG0532|consen  131 NQLSHLPDG-LCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-L-PSQLGYLTSLRDLNVRRNHLEDLP  205 (722)
T ss_pred             chhhcCChh-hhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-c-hHHhhhHHHHHHHHHhhhhhhhCC
Confidence            999999776 44444 999999999998 678888888999999999999985 4 777889999999999999999998


Q ss_pred             cccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccch--hcccccCeeecCCCC
Q psy8879         282 RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL--AHLSNLTTLDLSHNF  348 (694)
Q Consensus       282 ~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f--~~l~~L~~L~Ls~N~  348 (694)
                      ++ +.. -.|..||++.|++..+|. .|..+..|++|.|.+|.+..-+...-  +...-.++|+..-++
T Consensus       206 ~E-l~~-LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  206 EE-LCS-LPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HH-HhC-CceeeeecccCceeecch-hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            76 443 458999999999999986 69999999999999999987643321  122334667766664

>KOG3207|consensus

Probab=99.10  E-value=1e-11  Score=132.24  Aligned_cols=160  Identities=24%  Similarity=0.243  Sum_probs=99.6

Q ss_pred             CCccEEEccCCCCCCCCc-cccccCCCCccEEEccCCCCCCCCc--ccccCCCCccEEEecCCCCCCCCc-cccCCCCCC
Q psy8879         143 SPLQALGLPNNLLSVVPT-SALAPLAPNLDRLDLSHNQLYKLEN--TSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTL  218 (694)
Q Consensus       143 ~~L~~L~Ls~N~L~~lp~-~~~~~l~~~L~~L~Ls~N~L~~i~~--~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L  218 (694)
                      ..|+.+.|.+......+. .....+ ++++.|||++|-+....+  .....+++|+.|+|+.|++..... ..-..+++|
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~-~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKIL-PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhC-CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            458888888887776553 234455 888888888887766433  223567888888888888654322 222356778


Q ss_pred             cEEeccCCcccchh-hhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccc-cccCCcccceecc
Q psy8879         219 RVLRLQGNRLTVSV-VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSC  296 (694)
Q Consensus       219 ~~L~Ls~N~l~~~~-~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~-~~~~L~~L~~L~L  296 (694)
                      +.|.|+.|.++... ...+..+|+|+.|+|..|.... +.......+..|++|||++|++-..+.. ....++.|+.|++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            88888888877432 2334566778888887774221 1122333455677777777776655421 2345566666666


Q ss_pred             cCCccccc
Q psy8879         297 HHNQIDVL  304 (694)
Q Consensus       297 s~N~L~~i  304 (694)
                      +.+.|..+
T Consensus       279 s~tgi~si  286 (505)
T KOG3207|consen  279 SSTGIASI  286 (505)
T ss_pred             cccCcchh
Confidence            66666544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=9.3e-11  Score=114.30  Aligned_cols=140  Identities=29%  Similarity=0.381  Sum_probs=46.9

Q ss_pred             CCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCC
Q psy8879         103 TLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK  182 (694)
Q Consensus       103 s~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~  182 (694)
                      +.+.|...+. +.+...+++|+|.+|.|+.|..  +...+.+|+.|+|++|.|+.++.  +..+ ++|++|++++|.|+.
T Consensus         5 t~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~--l~~L-~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen    5 TANMIEQIAQ-YNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEG--LPGL-PRLKTLDLSNNRISS   78 (175)
T ss_dssp             --------------------------------S----TT-TT--EEE-TTS--S--TT-------TT--EEE--SS---S
T ss_pred             cccccccccc-cccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccC--ccCh-hhhhhcccCCCCCCc
Confidence            3344444433 3344467788888888887753  22233458888888888887764  6667 788888888888887


Q ss_pred             CCcccccCCCCccEEEecCCCCCCCCc-cccCCCCCCcEEeccCCcccchh---hhhhccCcccccccCC
Q psy8879         183 LENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLTVSV---VAALQGLRSVTDLDLS  248 (694)
Q Consensus       183 i~~~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L~~L~Ls~N~l~~~~---~~~~~~L~~L~~L~Ls  248 (694)
                      +.......+++|++|++++|+|..+.. ..+..+++|++|++.+|.+....   ...+..+|+|+.||-.
T Consensus        79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            764333457788888888888776543 45667788888888888776421   1234566777776653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=6.9e-11  Score=115.21  Aligned_cols=108  Identities=31%  Similarity=0.402  Sum_probs=28.0

Q ss_pred             CCccEEEccCCCCCCCCccccc-CCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCccccccc
Q psy8879         168 PNLDRLDLSHNQLYKLENTSFK-GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD  246 (694)
Q Consensus       168 ~~L~~L~Ls~N~L~~i~~~~f~-~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~  246 (694)
                      .++++|+|++|.|+.+..  ++ .+.+|+.|+|++|.|+.+..  +..+++|++|++++|+|+...+.....+++|++|+
T Consensus        19 ~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -----------------S----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccccc--hhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            455666666666655542  33 34556666666666665532  55566666666666666543222223455666666


Q ss_pred             CCCCcCCCCCCCCCCCCccccceeeccCCcccc
Q psy8879         247 LSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS  279 (694)
Q Consensus       247 Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~  279 (694)
                      +++|++.+.-.-..+..+++|+.|+|.+|.++.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            666665542112234445556666666665543

>KOG0531|consensus

Probab=99.07  E-value=3.7e-11  Score=133.73  Aligned_cols=265  Identities=29%  Similarity=0.312  Sum_probs=183.0

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      .++.++...+.+.........+..++.+.+..|.|..+... . +...+|+.|++.+|.|..+... +..+ ++|++|+|
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~~~~-l-~~~~~l~~l~l~~n~i~~i~~~-l~~~-~~L~~L~l  125 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKILNH-L-SKLKSLEALDLYDNKIEKIENL-LSSL-VNLQVLDL  125 (414)
T ss_pred             hhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhhhcc-c-ccccceeeeeccccchhhcccc-hhhh-hcchheec
Confidence            44445555444432221113445677777777877763221 1 2234588888888888887762 4556 88899999


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhh-hhhccCcccccccCCCCcCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV-AALQGLRSVTDLDLSHNLLAG  254 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~~L~Ls~N~l~~  254 (694)
                      ++|.|+.+..  +..++.|+.|++++|.|+.+..  +..++.|+.+++++|++....+ . ...+.+++.+++.+|.+..
T Consensus       126 s~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  126 SFNKITKLEG--LSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cccccccccc--hhhccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            9998888864  6677778899999998888754  5568888999999998885544 2 5677888889999988864


Q ss_pred             CCCCCCCCCccccceeeccCCcccccccccccCCcc--cceecccCCccccccchhhhcccccccccCCCCccccccccc
Q psy8879         255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK--LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS  332 (694)
Q Consensus       255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~--L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~  332 (694)
                         ...+..+..+..+++..|.++.+..  +..+..  |+.+++++|.+..++ ..+..+..+..|++.+|++..+..  
T Consensus       201 ---i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~--  272 (414)
T KOG0531|consen  201 ---IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG--  272 (414)
T ss_pred             ---ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccccc--
Confidence               3445555666667888888887643  233333  888999999888774 246677888899999998877643  


Q ss_pred             hhcccccCeeecCCCCCCCc---Ch-hhhCCCCCCCEEEccCCCCCCCC
Q psy8879         333 LAHLSNLTTLDLSHNFLRAL---TQ-DLITPLKSLQELRLDDNDISMEP  377 (694)
Q Consensus       333 f~~l~~L~~L~Ls~N~L~~l---~~-~~~~~l~~L~~L~Ls~N~L~~l~  377 (694)
                      +.....+..+.+..|.+...   .. ......+++..+.+.+|++....
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            44556777788888877632   11 22455778888888888877543

>KOG1259|consensus

Probab=99.03  E-value=7.3e-11  Score=120.14  Aligned_cols=135  Identities=30%  Similarity=0.408  Sum_probs=99.2

Q ss_pred             ccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccc
Q psy8879         237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS  316 (694)
Q Consensus       237 ~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~  316 (694)
                      ..+..|+++||++|.++. + .+...-+|.++.|++++|.+..+.  .+..+++|+.|||++|.++.+.. .-..+.+.+
T Consensus       281 dTWq~LtelDLS~N~I~~-i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIK  355 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQ-I-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVG-WHLKLGNIK  355 (490)
T ss_pred             chHhhhhhccccccchhh-h-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhh-hHhhhcCEe
Confidence            344567788888888874 3 555666788888888888888774  36677888888888888877654 233466778


Q ss_pred             cccCCCCccccccccchhcccccCeeecCCCCCCCcCh-hhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       317 ~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~-~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      .|.|++|.|..+.  .+..+-+|..||+++|+|..+.. ..++++|-|+.+.|.+|++..+++
T Consensus       356 tL~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  356 TLKLAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             eeehhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            8888888877663  35667788888888888877653 456778888888888888887765

>KOG0531|consensus

Probab=99.03  E-value=6e-11  Score=132.08  Aligned_cols=244  Identities=26%  Similarity=0.365  Sum_probs=188.8

Q ss_pred             CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      ..++.+++..|.+..+-..+..+.+|+.|++.+|.|..+...  ...+.+|++|++++|.|+.+..  +..+ +.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~--l~~l-~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEG--LSTL-TLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccc--hhhc-cchhhhe
Confidence            356667788888888666678889999999999999998762  2334569999999999999887  6677 7899999


Q ss_pred             ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCc-cccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879         175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA  253 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~  253 (694)
                      +++|.|+.+..  +..++.|+.+++++|++..+.+ . ...+.+++.+++.+|.+..  ...+..+..+..+++..|.+.
T Consensus       147 l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  147 LSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence            99999998864  6668999999999999998877 3 4678899999999999874  334444556666788889887


Q ss_pred             CCCCCCCCCCccc--cceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccc---
Q psy8879         254 GPLGPSTVPRLSS--LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV---  328 (694)
Q Consensus       254 ~~i~p~~~~~l~~--L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i---  328 (694)
                      . +  ..+..+..  |+.+++++|.+..++ ..+..+..+..|++.+|++..+..  +...+.+..+.+..|.+...   
T Consensus       222 ~-~--~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  295 (414)
T KOG0531|consen  222 K-L--EGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAI  295 (414)
T ss_pred             e-c--cCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhh
Confidence            4 2  22333444  899999999998874 346778899999999999887764  45567788888888887632   


Q ss_pred             ccc-chhcccccCeeecCCCCCCCcCh
Q psy8879         329 SGA-SLAHLSNLTTLDLSHNFLRALTQ  354 (694)
Q Consensus       329 ~~~-~f~~l~~L~~L~Ls~N~L~~l~~  354 (694)
                      ... .....+.+..+.+..|.+....+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  296 SQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hccccccccccccccccccCccccccc
Confidence            111 14566888999999998876543

>KOG3207|consensus

Probab=99.00  E-value=1.9e-10  Score=122.60  Aligned_cols=208  Identities=21%  Similarity=0.229  Sum_probs=102.1

Q ss_pred             CCccEEEccCCCCCCCCc-ccccCCCCccEEEecCCCCCCCCc--cccCCCCCCcEEeccCCcccchhhhh-hccCcccc
Q psy8879         168 PNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYNKLMTLSQ--DCLAPLVTLRVLRLQGNRLTVSVVAA-LQGLRSVT  243 (694)
Q Consensus       168 ~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N~l~~i~~--~~f~~L~~L~~L~Ls~N~l~~~~~~~-~~~L~~L~  243 (694)
                      ++|+.+.|.+........ .....+++++.|||++|-+..+.+  .....+|+|+.|+++.|++....... -..++.|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            566666666665544332 234456666677777666654433  23455666666666666654221111 11344556


Q ss_pred             cccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccc-hhhhcccccccccCCC
Q psy8879         244 DLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTLSHLDLAH  322 (694)
Q Consensus       244 ~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~  322 (694)
                      .|.+++|.++..--......+|+|+.|+|..|..-.+.......+..|++|+|++|++-..+. ...+.++.|+.|+++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence            666666655421001112334566666666664222222333444556666666665544331 2234455566666666


Q ss_pred             Cccccccccc------hhcccccCeeecCCCCCCCcCh-hhhCCCCCCCEEEccCCCCCC
Q psy8879         323 NRIVAVSGAS------LAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISM  375 (694)
Q Consensus       323 N~L~~i~~~~------f~~l~~L~~L~Ls~N~L~~l~~-~~~~~l~~L~~L~Ls~N~L~~  375 (694)
                      +.+.++..-.      ...+++|++|+++.|++...+. ..+..+++|+.|.+..|.++.
T Consensus       281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            6555442111      1234556666666665544332 112234455555555555543

>KOG1909|consensus

Probab=98.95  E-value=8.1e-11  Score=122.50  Aligned_cols=187  Identities=17%  Similarity=0.160  Sum_probs=121.4

Q ss_pred             ccCCCCccEEEecCCCCCCCCcc----ccCCCCCCcEEeccCCcccchhh-------------hhhccCcccccccCCCC
Q psy8879         188 FKGLSSLNFLDLSYNKLMTLSQD----CLAPLVTLRVLRLQGNRLTVSVV-------------AALQGLRSVTDLDLSHN  250 (694)
Q Consensus       188 f~~L~~L~~L~Ls~N~l~~i~~~----~f~~L~~L~~L~Ls~N~l~~~~~-------------~~~~~L~~L~~L~Ls~N  250 (694)
                      +.+.++|++|+||+|.+..-.+.    .++.+..|++|+|.+|.+...-.             .....-+.|+++...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            34456677777777766533222    24455677777777776642111             12233467777777777


Q ss_pred             cCCCCC---CCCCCCCccccceeeccCCcccc----cccccccCCcccceecccCCcccccc----chhhhccccccccc
Q psy8879         251 LLAGPL---GPSTVPRLSSLKVLSIAHNQFSS----VRRGALAGLDKLTSLSCHHNQIDVLE----DHSFRALSTLSHLD  319 (694)
Q Consensus       251 ~l~~~i---~p~~~~~l~~L~~L~Ls~N~L~~----i~~~~~~~L~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~  319 (694)
                      ++...-   ....|...+.|+++.+..|.|..    .....|..+++|+.|||.+|-++...    ..+++.+++|+.|+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            775310   02235556778888888887653    22345677888888888888876433    34566778888999


Q ss_pred             CCCCccccccccchh-----cccccCeeecCCCCCCCcC----hhhhCCCCCCCEEEccCCCCC
Q psy8879         320 LAHNRIVAVSGASLA-----HLSNLTTLDLSHNFLRALT----QDLITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       320 Ls~N~L~~i~~~~f~-----~l~~L~~L~Ls~N~L~~l~----~~~~~~l~~L~~L~Ls~N~L~  374 (694)
                      +++|.+..-...+|.     ..++|+.|.|.+|.|+.-.    .......+.|..|+|++|.+.
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            998888776554442     3588999999999886422    223445788999999999984

>KOG1259|consensus

Probab=98.93  E-value=2.6e-10  Score=116.15  Aligned_cols=131  Identities=27%  Similarity=0.370  Sum_probs=70.4

Q ss_pred             CCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecc
Q psy8879         217 TLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC  296 (694)
Q Consensus       217 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~L  296 (694)
                      .|++|+|++|.|+ .+..+..-++.++.|++++|.+..   -..+..+++|+.|||++|.++.+. ++-..+-++++|.|
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~---v~nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT---VQNLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceee---ehhhhhcccceEeecccchhHhhh-hhHhhhcCEeeeeh
Confidence            3444444444444 233333344455555555555542   122444555555666655555542 23344556666666


Q ss_pred             cCCccccccchhhhcccccccccCCCCccccccc-cchhcccccCeeecCCCCCCCcCh
Q psy8879         297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQ  354 (694)
Q Consensus       297 s~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~~  354 (694)
                      ++|.|..+.  .+..+-+|..||+++|+|..+.. ..++++|-|+.+.|.+|.+..++.
T Consensus       360 a~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  360 AQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            666665443  24455566666666666655432 345666777777777777766654

>KOG1909|consensus

Probab=98.85  E-value=5.1e-10  Score=116.61  Aligned_cols=91  Identities=22%  Similarity=0.250  Sum_probs=49.2

Q ss_pred             CCCCCCCeeEEEcCCCCCCC-----CCccccCCCCccEEEccCCCCCC----CCc------chhcCCCCCccEEEccCCC
Q psy8879          90 GLEPDERVSLLDCTLSNVTV-----LPGKFLEGVTLHGLVISSGELKN----ISD------GAFIGLSSPLQALGLPNNL  154 (694)
Q Consensus        90 ~l~~~~~L~~Ldls~n~l~~-----lp~~~~~~~~L~~L~Ls~n~i~~----i~~------~~F~~l~~~L~~L~Ls~N~  154 (694)
                      .+.+...++.+++++|.+..     +...+.+.++|+..++++--...    +++      .++.+.+ .|++|+||+|.
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~-~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP-KLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC-ceeEeeccccc
Confidence            34456688999999999853     44555666678777776532222    111      1222223 36666666666


Q ss_pred             CCCCCcc----ccccCCCCccEEEccCCCCCC
Q psy8879         155 LSVVPTS----ALAPLAPNLDRLDLSHNQLYK  182 (694)
Q Consensus       155 L~~lp~~----~~~~l~~~L~~L~Ls~N~L~~  182 (694)
                      |+.-...    .++.+ ..|++|.|.+|.+..
T Consensus       104 ~G~~g~~~l~~ll~s~-~~L~eL~L~N~Glg~  134 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSC-TDLEELYLNNCGLGP  134 (382)
T ss_pred             cCccchHHHHHHHHhc-cCHHHHhhhcCCCCh
Confidence            5532111    12233 556666666665543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=4.4e-09  Score=84.38  Aligned_cols=57  Identities=35%  Similarity=0.561  Sum_probs=23.2

Q ss_pred             cceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCC
Q psy8879         291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN  347 (694)
Q Consensus       291 L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N  347 (694)
                      |++|++++|+++.+++..|.++++|+.|++++|+++.+++..|.++++|++|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            333444444444444334444444444444444444443334444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=5.8e-09  Score=83.68  Aligned_cols=59  Identities=42%  Similarity=0.623  Sum_probs=29.1

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCc
Q psy8879         169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR  227 (694)
Q Consensus       169 ~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~  227 (694)
                      +|++|++++|+|+.+++..|.++++|++|++++|.++.+++++|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444555444444444444445555555555555544444444555555555554443

...

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=5.7e-08  Score=113.56  Aligned_cols=107  Identities=26%  Similarity=0.374  Sum_probs=89.1

Q ss_pred             CccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeec
Q psy8879         193 SLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSI  272 (694)
Q Consensus       193 ~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~L  272 (694)
                      .++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+ |..+..+++|+.|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEEC
Confidence            3778899999988888888888899999999999998888888889999999999999998866 777888899999999


Q ss_pred             cCCcccccccccccCC-cccceecccCCc
Q psy8879         273 AHNQFSSVRRGALAGL-DKLTSLSCHHNQ  300 (694)
Q Consensus       273 s~N~L~~i~~~~~~~L-~~L~~L~Ls~N~  300 (694)
                      ++|.+++..|..+.++ .++..+++.+|.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCc
Confidence            9999887766666553 456777888775

>PLN03150 hypothetical protein; Provisional

Probab=98.59  E-value=7.1e-08  Score=112.74  Aligned_cols=108  Identities=25%  Similarity=0.287  Sum_probs=94.8

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCC
Q psy8879         169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLS  248 (694)
Q Consensus       169 ~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls  248 (694)
                      .++.|+|++|.+.+..+..+..+++|+.|+|++|++.+..|..+..+++|+.|+|++|++.+.+|..+.++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999998888889999999999999999998888889999999999999999999999999999999999999


Q ss_pred             CCcCCCCCCCCCCCC-ccccceeeccCCcc
Q psy8879         249 HNLLAGPLGPSTVPR-LSSLKVLSIAHNQF  277 (694)
Q Consensus       249 ~N~l~~~i~p~~~~~-l~~L~~L~Ls~N~L  277 (694)
                      +|.+.|.+ |..+.. ..++..+++.+|..
T Consensus       499 ~N~l~g~i-P~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRV-PAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccC-ChHHhhccccCceEEecCCcc
Confidence            99999877 555554 34667888888854

>KOG4658|consensus

Probab=98.58  E-value=9.9e-08  Score=114.43  Aligned_cols=273  Identities=23%  Similarity=0.267  Sum_probs=165.8

Q ss_pred             CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCC--CCCCCcchhcCCCCCccEEEccCC-CCCCCCccccccCCCCcc
Q psy8879          95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGE--LKNISDGAFIGLSSPLQALGLPNN-LLSVVPTSALAPLAPNLD  171 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~--i~~i~~~~F~~l~~~L~~L~Ls~N-~L~~lp~~~~~~l~~~L~  171 (694)
                      ...+...+-+|.+..++.... .+.|++|-+..|.  +..++...|..+.. |++|||++| .+..+|. .++.+ -+|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~-LrVLDLs~~~~l~~LP~-~I~~L-i~Lr  598 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPL-LRVLDLSGNSSLSKLPS-SIGEL-VHLR  598 (889)
T ss_pred             hheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcc-eEEEECCCCCccCcCCh-HHhhh-hhhh
Confidence            466777777778777765543 3478889888886  77787777776654 999999987 5677776 47778 8999


Q ss_pred             EEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcc--cchhhhhhccCcccccccCCC
Q psy8879         172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL--TVSVVAALQGLRSVTDLDLSH  249 (694)
Q Consensus       172 ~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l--~~~~~~~~~~L~~L~~L~Ls~  249 (694)
                      +|+|++..+..+| ..++++.+|.+|++..+.-....++....+++|++|.+.....  ....-..+..+.+|+.+....
T Consensus       599 yL~L~~t~I~~LP-~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  599 YLDLSDTGISHLP-SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cccccCCCccccc-hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            9999999998877 4688899999999998876555577677789999998876542  222333445555555555533


Q ss_pred             CcCCCCCCCCCCCCccccc----eeeccCCcccccccccccCCcccceecccCCccccccchhhhc------cccccccc
Q psy8879         250 NLLAGPLGPSTVPRLSSLK----VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA------LSTLSHLD  319 (694)
Q Consensus       250 N~l~~~i~p~~~~~l~~L~----~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~------l~~L~~L~  319 (694)
                      ....  + ...+..+..|.    .+.+.++..... ...+..+.+|+.|.+.++.+..+....+..      ++++..+.
T Consensus       678 ~s~~--~-~e~l~~~~~L~~~~~~l~~~~~~~~~~-~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~  753 (889)
T KOG4658|consen  678 SSVL--L-LEDLLGMTRLRSLLQSLSIEGCSKRTL-ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS  753 (889)
T ss_pred             chhH--h-HhhhhhhHHHHHHhHhhhhccccccee-ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence            3220  0 11122223332    222222222222 234667778888888877775443222111      22333333


Q ss_pred             CCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCC
Q psy8879         320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP  377 (694)
Q Consensus       320 Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~  377 (694)
                      ..++..-.. +.+....++|+.|.+......+.+......+..++.+-+..+.+.+.+
T Consensus       754 ~~~~~~~r~-l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~  810 (889)
T KOG4658|consen  754 ILNCHMLRD-LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLR  810 (889)
T ss_pred             hhccccccc-cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccce
Confidence            333322111 122233478888888877665544444444555555556666665543

>KOG1859|consensus

Probab=98.47  E-value=6.3e-09  Score=116.71  Aligned_cols=199  Identities=25%  Similarity=0.295  Sum_probs=131.9

Q ss_pred             CCccEEEccCCCCCCCC-cccccCCCCccEEEecCCCCCCCCccccCCC-CCCcEEeccCCcccchhhhhh-------c-
Q psy8879         168 PNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL-VTLRVLRLQGNRLTVSVVAAL-------Q-  237 (694)
Q Consensus       168 ~~L~~L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~~~~~-------~-  237 (694)
                      ++++.|.+-.-.-.+-. |-.+..+.+|+.|.|.++.+.... + +..+ ..|+.|.-.+ .+. ...+.|       . 
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~-G-L~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAK-G-LQELRHQLEKLICHN-SLD-ALRHVFASCGGDISN  159 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhh-h-hHHHHHhhhhhhhhc-cHH-HHHHHHHHhcccccc
Confidence            45555555433221111 334556778999999988876521 1 1111 2455554332 221 111111       1 


Q ss_pred             --cCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccc
Q psy8879         238 --GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL  315 (694)
Q Consensus       238 --~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L  315 (694)
                        .+..|...++++|.+.- + ...+.-++.|+.|+|++|+++++.  .+..+++|++|||+.|.+..++.-...++. |
T Consensus       160 s~~Wn~L~~a~fsyN~L~~-m-D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  160 SPVWNKLATASFSYNRLVL-M-DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L  234 (1096)
T ss_pred             chhhhhHhhhhcchhhHHh-H-HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-h
Confidence              12467788888888873 2 566777888999999999998885  678889999999999999888875555665 9


Q ss_pred             ccccCCCCccccccccchhcccccCeeecCCCCCCCcCh-hhhCCCCCCCEEEccCCCCCCCC
Q psy8879         316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMEP  377 (694)
Q Consensus       316 ~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~-~~~~~l~~L~~L~Ls~N~L~~l~  377 (694)
                      ..|.|++|.++.+-  .+.++.+|+.||+++|-|.+-.. ..+..+..|+.|+|.||++-.-|
T Consensus       235 ~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  235 QLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             eeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            99999999888763  35688899999999998865432 22455678889999999887443

>KOG1859|consensus

Probab=98.37  E-value=6e-09  Score=116.88  Aligned_cols=180  Identities=24%  Similarity=0.211  Sum_probs=98.9

Q ss_pred             CccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCC----------CCCCCCccccccCCCCccEEEccCCCC
Q psy8879         111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN----------LLSVVPTSALAPLAPNLDRLDLSHNQL  180 (694)
Q Consensus       111 p~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N----------~L~~lp~~~~~~l~~~L~~L~Ls~N~L  180 (694)
                      |-.++.+..|+.|.+.++++....  -+.++-..|+.|.-.+.          ...++... +..  -.|...+.++|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns-~~W--n~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLICHNSLDALRHVFASCGGDISNS-PVW--NKLATASFSYNRL  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc-hhh--hhHhhhhcchhhH
Confidence            666777888899999888887632  12333334555544331          01111111 111  2456666666666


Q ss_pred             CCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCC
Q psy8879         181 YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPST  260 (694)
Q Consensus       181 ~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~  260 (694)
                      ..++ .++.-++.|+.|+|++|+++...  .+..+++|++|+|+.|.+....--...++. |+.|.+++|.++.   -..
T Consensus       177 ~~mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t---L~g  249 (1096)
T KOG1859|consen  177 VLMD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT---LRG  249 (1096)
T ss_pred             HhHH-HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh---hhh
Confidence            5554 34555666666666666666554  356666666666666666532222222332 6666666666653   234


Q ss_pred             CCCccccceeeccCCcccccccc-cccCCcccceecccCCccc
Q psy8879         261 VPRLSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQID  302 (694)
Q Consensus       261 ~~~l~~L~~L~Ls~N~L~~i~~~-~~~~L~~L~~L~Ls~N~L~  302 (694)
                      +.++.+|+.||+++|-|.+...- .+..+..|+.|+|.+|.+-
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            55566666666666665543211 2334456666666666654

>KOG4658|consensus

Probab=98.37  E-value=3.5e-07  Score=109.82  Aligned_cols=252  Identities=25%  Similarity=0.256  Sum_probs=156.2

Q ss_pred             CCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCC--CCCCCccccccCCCCccEEEccCC-CCCCCCcccccCCC
Q psy8879         116 EGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL--LSVVPTSALAPLAPNLDRLDLSHN-QLYKLENTSFKGLS  192 (694)
Q Consensus       116 ~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~--L~~lp~~~~~~l~~~L~~L~Ls~N-~L~~i~~~~f~~L~  192 (694)
                      .....+...+-+|.+..+...  ...+ .|++|-+..|.  +..++...|..+ +.|+.|||++| .+..+| ..++++-
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~--~~~~-~L~tLll~~n~~~l~~is~~ff~~m-~~LrVLDLs~~~~l~~LP-~~I~~Li  595 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGS--SENP-KLRTLLLQRNSDWLLEISGEFFRSL-PLLRVLDLSGNSSLSKLP-SSIGELV  595 (889)
T ss_pred             chhheeEEEEeccchhhccCC--CCCC-ccceEEEeecchhhhhcCHHHHhhC-cceEEEECCCCCccCcCC-hHHhhhh
Confidence            335677777777777776554  2222 48888888886  788888888888 89999999987 344454 6788888


Q ss_pred             CccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC-CCCCCCCCCccccceee
Q psy8879         193 SLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-PLGPSTVPRLSSLKVLS  271 (694)
Q Consensus       193 ~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~-~i~p~~~~~l~~L~~L~  271 (694)
                      +|++|++++..+..+|.+ +.++.+|.+|++..+......+.....+.+|++|.+....... ...-..+.++.+|+.+.
T Consensus       596 ~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls  674 (889)
T KOG4658|consen  596 HLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS  674 (889)
T ss_pred             hhhcccccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence            999999999988877655 8888899999998887665667777778889988887665221 11122234444555444


Q ss_pred             ccCCcccccccccccCCcccc----eecccCCccccccchhhhcccccccccCCCCccccccccchhc------ccccCe
Q psy8879         272 IAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH------LSNLTT  341 (694)
Q Consensus       272 Ls~N~L~~i~~~~~~~L~~L~----~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~------l~~L~~  341 (694)
                      ...... .+. ..+..+..|.    .+.+.++..... ...+..+.+|+.|.+.++.+.++....+..      ++++..
T Consensus       675 ~~~~s~-~~~-e~l~~~~~L~~~~~~l~~~~~~~~~~-~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~  751 (889)
T KOG4658|consen  675 ITISSV-LLL-EDLLGMTRLRSLLQSLSIEGCSKRTL-ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK  751 (889)
T ss_pred             eecchh-HhH-hhhhhhHHHHHHhHhhhhccccccee-ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence            433322 111 1223333333    233323222222 235677889999999999987654433221      222333


Q ss_pred             eecCCCC-CCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         342 LDLSHNF-LRALTQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       342 L~Ls~N~-L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      +...+.. ...+..  ....++|+.|.+...+....+.
T Consensus       752 ~~~~~~~~~r~l~~--~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  752 VSILNCHMLRDLTW--LLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             HHhhccccccccch--hhccCcccEEEEecccccccCC
Confidence            3222222 222222  2236799999999877654443

>KOG2982|consensus

Probab=98.29  E-value=1.6e-07  Score=96.11  Aligned_cols=108  Identities=29%  Similarity=0.380  Sum_probs=70.9

Q ss_pred             ccEEEccCCCCCCCCc-cccccCCCCccEEEccCCCCCCCCc--ccccCCCCccEEEecCCCCCCCCccccCCCCCCcEE
Q psy8879         145 LQALGLPNNLLSVVPT-SALAPLAPNLDRLDLSHNQLYKLEN--TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL  221 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~-~~~~~l~~~L~~L~Ls~N~L~~i~~--~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L  221 (694)
                      ++.|.+.+..|..... ..|+...+.++.+||.+|.|+....  ..+.++|.|+.|+|+.|++.......-..+.+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            5566666766654432 2333334788888999888876432  235678888889998888765433211355688888


Q ss_pred             eccCCcccchh-hhhhccCcccccccCCCCcC
Q psy8879         222 RLQGNRLTVSV-VAALQGLRSVTDLDLSHNLL  252 (694)
Q Consensus       222 ~Ls~N~l~~~~-~~~~~~L~~L~~L~Ls~N~l  252 (694)
                      .|.+..+.... ...+..+|.+++|+++.|.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            88887775433 33456677788888887744

>KOG2982|consensus

Probab=98.16  E-value=6e-07  Score=92.07  Aligned_cols=110  Identities=27%  Similarity=0.262  Sum_probs=80.9

Q ss_pred             CccEEEccCCCCCCCCc-chhcCCCCCccEEEccCCCCCCCC--ccccccCCCCccEEEccCCCCCCCCcccccCCCCcc
Q psy8879         119 TLHGLVISSGELKNISD-GAFIGLSSPLQALGLPNNLLSVVP--TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN  195 (694)
Q Consensus       119 ~L~~L~Ls~n~i~~i~~-~~F~~l~~~L~~L~Ls~N~L~~lp--~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~  195 (694)
                      .+.-|.+.++.|..+.. ..|......++.|||.+|.|+.-.  ...+.++ |.|+.|+|+.|++.......-..+.+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~l-P~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQL-PALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcC-ccceEeeccCCcCCCccccCcccccceE
Confidence            45567777888877654 345555667999999999998632  2346678 9999999999998765533224667999


Q ss_pred             EEEecCCCCCCCCc-cccCCCCCCcEEeccCCccc
Q psy8879         196 FLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLT  229 (694)
Q Consensus       196 ~L~Ls~N~l~~i~~-~~f~~L~~L~~L~Ls~N~l~  229 (694)
                      .|.|.+..+..... ..+..+|++++|.++.|.+.
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            99999987764333 34677899999999988544

>KOG4579|consensus

Probab=98.06  E-value=5.8e-07  Score=82.69  Aligned_cols=88  Identities=24%  Similarity=0.315  Sum_probs=42.8

Q ss_pred             ccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecC
Q psy8879         266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS  345 (694)
Q Consensus       266 ~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls  345 (694)
                      .|+..+|++|.+.++++..-...+.++.|+|++|.|+.+|.. +..++.|+.|+++.|.+...+ ..+..+.+|..|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p-~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEP-RVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccch-HHHHHHHhHHHhcCC
Confidence            344445555555555444333334455555555555555443 555555555555555554442 222234555555555


Q ss_pred             CCCCCCcChh
Q psy8879         346 HNFLRALTQD  355 (694)
Q Consensus       346 ~N~L~~l~~~  355 (694)
                      +|.+..++.+
T Consensus       132 ~na~~eid~d  141 (177)
T KOG4579|consen  132 ENARAEIDVD  141 (177)
T ss_pred             CCccccCcHH
Confidence            5555555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.05  E-value=6.9e-06  Score=75.46  Aligned_cols=125  Identities=17%  Similarity=0.377  Sum_probs=44.9

Q ss_pred             CccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhcc
Q psy8879         159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG  238 (694)
Q Consensus       159 p~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~  238 (694)
                      +..+|.+. ++|+.+.+.. .+..+....|.++++|+.+.+.++ +..+...+|..+++|+.+.+.+ .+..        
T Consensus         4 ~~~~F~~~-~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~--------   71 (129)
T PF13306_consen    4 GNNAFYNC-SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS--------   71 (129)
T ss_dssp             -TTTTTT--TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E--------
T ss_pred             CHHHHhCC-CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccc--------
Confidence            33444444 4555555542 344455455555555555555443 4444444455544455554432 2221        


Q ss_pred             CcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccc
Q psy8879         239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL  315 (694)
Q Consensus       239 L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L  315 (694)
                                       ++...|..+++|+.+++..+ +..+....|.+. +|+.+.+.. .+..++..+|.++++|
T Consensus        72 -----------------i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   72 -----------------IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -----------------E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             -----------------cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence                             22334444555555555443 444555555554 555555543 4444555555555444

>KOG1644|consensus

Probab=98.01  E-value=6.5e-06  Score=80.56  Aligned_cols=83  Identities=30%  Similarity=0.379  Sum_probs=43.3

Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCc-cccCCCCCCcEEe
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLR  222 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L~~L~  222 (694)
                      +...+||++|.+..++.  |.++ +.|.+|.|++|+|+.|.+..-.-+++|+.|.|.+|+|..+.. +.+..+|+|++|.
T Consensus        43 ~~d~iDLtdNdl~~l~~--lp~l-~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN--LPHL-PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhccc--CCCc-cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            35555555555555443  4444 555556665555555555433344555555555555443321 2244555555555


Q ss_pred             ccCCccc
Q psy8879         223 LQGNRLT  229 (694)
Q Consensus       223 Ls~N~l~  229 (694)
                      +-+|..+
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            5555544

>TIGR00864 PCC polycystin cation channel protein

Probab=97.98  E-value=8e-06  Score=104.46  Aligned_cols=69  Identities=19%  Similarity=0.279  Sum_probs=57.3

Q ss_pred             ecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccccccccccccc--CCccCccccCCccccee
Q psy8879         343 DLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLL--IPVMLSLCTRSSVVTRY  420 (694)
Q Consensus       343 ~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~--~~~~~~~C~~~~~~~~~  420 (694)
                      ||++|+|+.+++..|..+++|+.|+|++|+|.            |||++.||+.|++...+  .....+.|..|...++.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~------------CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~   68 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE------------CDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQ   68 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccc------------cccccHHHHHHHHhcCccccCCcccCCCCChHHCCC
Confidence            68999999999999999999999999999999            99999999999975432  23457889988755554


Q ss_pred             eEE
Q psy8879         421 RYC  423 (694)
Q Consensus       421 ~~~  423 (694)
                      ...
T Consensus        69 ~L~   71 (2740)
T TIGR00864        69 PLL   71 (2740)
T ss_pred             Ccc
Confidence            433

Note: this model has been restricted to the amino half because for technical reasons.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.95  E-value=1.4e-05  Score=73.46  Aligned_cols=77  Identities=16%  Similarity=0.391  Sum_probs=29.7

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ  224 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls  224 (694)
                      |+.+.+.. .+..++..+|.++ ++|+.+.+.++ +..+....|.++++|+.+.+.+ .+..+....|..+++|+.+.+.
T Consensus        14 l~~i~~~~-~~~~I~~~~F~~~-~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   14 LESITFPN-TIKKIGENAFSNC-TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             --EEEETS-T--EE-TTTTTT--TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCEEEECC-CeeEeChhhcccc-ccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            44444442 3444444444444 44555554442 4444444455544455555533 3334444444444455555444


Q ss_pred             C
Q psy8879         225 G  225 (694)
Q Consensus       225 ~  225 (694)
                      .
T Consensus        90 ~   90 (129)
T PF13306_consen   90 S   90 (129)
T ss_dssp             T
T ss_pred             c
Confidence            3

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.77  E-value=1.1e-05  Score=82.13  Aligned_cols=87  Identities=18%  Similarity=0.116  Sum_probs=39.0

Q ss_pred             cccceecccCCcccccc----chhhhcccccccccCCCCccccccccchh------cccccCeeecCCCCCCCc-C----
Q psy8879         289 DKLTSLSCHHNQIDVLE----DHSFRALSTLSHLDLAHNRIVAVSGASLA------HLSNLTTLDLSHNFLRAL-T----  353 (694)
Q Consensus       289 ~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~------~l~~L~~L~Ls~N~L~~l-~----  353 (694)
                      .+|+.|+|++|-++...    ..++..++.|+.|.+.+|-++.-...++-      ..++|..|-+.+|.+.+- .    
T Consensus       214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~  293 (388)
T COG5238         214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDIS  293 (388)
T ss_pred             CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeec
Confidence            44555555555443222    22333444555555555555443322211      235555555555554321 0    


Q ss_pred             --hhhhCCCCCCCEEEccCCCCCC
Q psy8879         354 --QDLITPLKSLQELRLDDNDISM  375 (694)
Q Consensus       354 --~~~~~~l~~L~~L~Ls~N~L~~  375 (694)
                        .-.=..++-|..|.+.||+|..
T Consensus       294 l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         294 LNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhhhhhcccHHHHHHHHccCcchh
Confidence              0001234555666666666664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.77  E-value=2.6e-06  Score=86.53  Aligned_cols=234  Identities=18%  Similarity=0.160  Sum_probs=119.4

Q ss_pred             cCCCCccEEEccCCCCCCCCcchhcCC---CCCccEEEccCCCCCCC----C------ccccccCCCCccEEEccCCCCC
Q psy8879         115 LEGVTLHGLVISSGELKNISDGAFIGL---SSPLQALGLPNNLLSVV----P------TSALAPLAPNLDRLDLSHNQLY  181 (694)
Q Consensus       115 ~~~~~L~~L~Ls~n~i~~i~~~~F~~l---~~~L~~L~Ls~N~L~~l----p------~~~~~~l~~~L~~L~Ls~N~L~  181 (694)
                      ..+..++.++||+|.|..-....+...   -.+|+..++++--.+..    +      ..++.++ ++|+.++||+|.+.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc-p~l~~v~LSDNAfg  105 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC-PRLQKVDLSDNAFG  105 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC-CcceeeeccccccC
Confidence            345567778888887765333322221   23466666665322211    1      1234444 67777777777655


Q ss_pred             CCCcc----cccCCCCccEEEecCCCCCCCCccccC-------------CCCCCcEEeccCCcccchhhh----hhccCc
Q psy8879         182 KLENT----SFKGLSSLNFLDLSYNKLMTLSQDCLA-------------PLVTLRVLRLQGNRLTVSVVA----ALQGLR  240 (694)
Q Consensus       182 ~i~~~----~f~~L~~L~~L~Ls~N~l~~i~~~~f~-------------~L~~L~~L~Ls~N~l~~~~~~----~~~~L~  240 (694)
                      .-.+.    .++.-+.|++|.+++|.+..+..+.++             .-|.|+......|++......    .+..-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            43222    234456677777777665544332221             235667777776666532211    122224


Q ss_pred             ccccccCCCCcCCCCCCCCC--------CCCccccceeeccCCcccccc----cccccCCcccceecccCCccccccchh
Q psy8879         241 SVTDLDLSHNLLAGPLGPST--------VPRLSSLKVLSIAHNQFSSVR----RGALAGLDKLTSLSCHHNQIDVLEDHS  308 (694)
Q Consensus       241 ~L~~L~Ls~N~l~~~i~p~~--------~~~l~~L~~L~Ls~N~L~~i~----~~~~~~L~~L~~L~Ls~N~L~~i~~~~  308 (694)
                      +|+.+.+..|.+.    |..        +..+.+|+.|||.+|.++...    ...+...+.|++|.+.+|-++.-...+
T Consensus       186 ~lk~vki~qNgIr----pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~  261 (388)
T COG5238         186 NLKEVKIQQNGIR----PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKS  261 (388)
T ss_pred             CceeEEeeecCcC----cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHH
Confidence            5666666666654    221        223456677777777665322    223444455666766666655333221


Q ss_pred             ----hh--cccccccccCCCCccccccc-----cch--hcccccCeeecCCCCCCCcC
Q psy8879         309 ----FR--ALSTLSHLDLAHNRIVAVSG-----ASL--AHLSNLTTLDLSHNFLRALT  353 (694)
Q Consensus       309 ----f~--~l~~L~~L~Ls~N~L~~i~~-----~~f--~~l~~L~~L~Ls~N~L~~l~  353 (694)
                          |.  ..++|..|...+|.+.+-..     ..+  ..+|-|..|.+.+|++....
T Consensus       262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~  319 (388)
T COG5238         262 VLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA  319 (388)
T ss_pred             HHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence                11  23566666666665443111     011  24556666666666666543

>KOG2120|consensus

Probab=97.77  E-value=9.2e-07  Score=90.77  Aligned_cols=176  Identities=20%  Similarity=0.154  Sum_probs=86.0

Q ss_pred             CccEEEccCCCCCCCC-cccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCc-ccch-hhhhhccCcccccc
Q psy8879         169 NLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR-LTVS-VVAALQGLRSVTDL  245 (694)
Q Consensus       169 ~L~~L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~-l~~~-~~~~~~~L~~L~~L  245 (694)
                      .|++||||...|+.-. ...++.+.+|+.|.|.++++.+-....++.-.+|+.|+++.+. ++.. ..-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            3555555554443211 0123344555555555555555444445555555555555532 2211 11234455556666


Q ss_pred             cCCCCcCCCCCCCCCCCC-ccccceeeccCCcc----cccccccccCCcccceecccCCc-cccccchhhhccccccccc
Q psy8879         246 DLSHNLLAGPLGPSTVPR-LSSLKVLSIAHNQF----SSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLD  319 (694)
Q Consensus       246 ~Ls~N~l~~~i~p~~~~~-l~~L~~L~Ls~N~L----~~i~~~~~~~L~~L~~L~Ls~N~-L~~i~~~~f~~l~~L~~L~  319 (694)
                      +++.+.+....-...... -++|+.|+|++..-    +.+ ..-...+++|.+|||++|. ++.--...|-.++.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            666555442110001111 13555666655421    111 1112456777777777763 3322223455667777777


Q ss_pred             CCCCccccccccc---hhcccccCeeecCCC
Q psy8879         320 LAHNRIVAVSGAS---LAHLSNLTTLDLSHN  347 (694)
Q Consensus       320 Ls~N~L~~i~~~~---f~~l~~L~~L~Ls~N  347 (694)
                      ++.|.  +++|+.   +...|.|.+||..+.
T Consensus       345 lsRCY--~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCY--DIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence            77765  344443   345678888887765

>KOG1644|consensus

Probab=97.75  E-value=3e-05  Score=76.00  Aligned_cols=103  Identities=25%  Similarity=0.313  Sum_probs=57.0

Q ss_pred             cEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccC
Q psy8879         146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG  225 (694)
Q Consensus       146 ~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~  225 (694)
                      +.++|.+.++..+..  ++....+...+||++|.+..+.  .|..++.|.+|.|++|+|+.+.+..-.-+++|+.|.|.+
T Consensus        22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccchhh--ccccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            455555555554443  2222245666777777666554  366666777777777777777665444456666666666


Q ss_pred             Ccccchh-hhhhccCcccccccCCCCcC
Q psy8879         226 NRLTVSV-VAALQGLRSVTDLDLSHNLL  252 (694)
Q Consensus       226 N~l~~~~-~~~~~~L~~L~~L~Ls~N~l  252 (694)
                      |.|.... -..+..+++|++|.+-+|..
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCch
Confidence            6665211 12233444455554444444

>KOG4579|consensus

Probab=97.69  E-value=6.3e-06  Score=75.98  Aligned_cols=118  Identities=24%  Similarity=0.246  Sum_probs=79.9

Q ss_pred             cceeeccCCcccccccc--cccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeec
Q psy8879         267 LKVLSIAHNQFSSVRRG--ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL  344 (694)
Q Consensus       267 L~~L~Ls~N~L~~i~~~--~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~L  344 (694)
                      +..++|+.+++-.+...  .+.....|+..+|++|.+..+++..-..++.++.|+|++|.|++++.+ +..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence            44566666665544321  233445677777888888777776555566777888888888887555 777788888888


Q ss_pred             CCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCC
Q psy8879         345 SHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNT  386 (694)
Q Consensus       345 s~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~Np  386 (694)
                      +.|.+...+.-.+ ++.+|..|+..+|.+..+|...|...+|
T Consensus       108 ~~N~l~~~p~vi~-~L~~l~~Lds~~na~~eid~dl~~s~~~  148 (177)
T KOG4579|consen  108 RFNPLNAEPRVIA-PLIKLDMLDSPENARAEIDVDLFYSSLP  148 (177)
T ss_pred             ccCccccchHHHH-HHHhHHHhcCCCCccccCcHHHhccccH
Confidence            8888777665433 3777777888888887777776664443

>KOG2120|consensus

Probab=97.65  E-value=1.9e-06  Score=88.47  Aligned_cols=223  Identities=20%  Similarity=0.188  Sum_probs=144.2

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCC-CcccccCC-CCccEEEecCCCCCCCC-ccccCCCCCCcEE
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKL-ENTSFKGL-SSLNFLDLSYNKLMTLS-QDCLAPLVTLRVL  221 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i-~~~~f~~L-~~L~~L~Ls~N~l~~i~-~~~f~~L~~L~~L  221 (694)
                      =+.||+.+-.|.......+..  .....+.+....+..- ....+.-. +.|++|||++..|+.-. -..++.+.+|+.|
T Consensus       138 W~~lDl~~r~i~p~~l~~l~~--rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l  215 (419)
T KOG2120|consen  138 WQTLDLTGRNIHPDVLGRLLS--RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL  215 (419)
T ss_pred             eeeeccCCCccChhHHHHHHh--CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence            456677666555433222221  3455566653322211 11112111 35999999998877432 2346778899999


Q ss_pred             eccCCcccchhhhhhccCcccccccCCCCc-CCCCCCCCCCCCccccceeeccCCcccccccc-cccC-CcccceecccC
Q psy8879         222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNL-LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG-ALAG-LDKLTSLSCHH  298 (694)
Q Consensus       222 ~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~-l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~-~~~~-L~~L~~L~Ls~  298 (694)
                      .+.++++...+...+.+-.+|+.|+++.+. ++..-..-.+.+++.|.+|+|+.+.+..-.-. .... -++|+.|+|++
T Consensus       216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG  295 (419)
T KOG2120|consen  216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG  295 (419)
T ss_pred             cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence            999999998888899999999999999874 33211122367789999999999977642211 1111 25788899987


Q ss_pred             Cccc--ccc-chhhhcccccccccCCCCcc-ccccccchhcccccCeeecCCCCCCCcChhh---hCCCCCCCEEEccCC
Q psy8879         299 NQID--VLE-DHSFRALSTLSHLDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDL---ITPLKSLQELRLDDN  371 (694)
Q Consensus       299 N~L~--~i~-~~~f~~l~~L~~L~Ls~N~L-~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~---~~~l~~L~~L~Ls~N  371 (694)
                      ..-.  .-. ......+++|..|||++|.. +.-....|-+++.|++|.|+.+.  +++|+.   +...++|.+||+.+.
T Consensus       296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence            6321  111 12235689999999998763 33233556788999999998875  455544   456789999999874

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.55  E-value=7.2e-05  Score=55.87  Aligned_cols=38  Identities=39%  Similarity=0.542  Sum_probs=20.0

Q ss_pred             ccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879         338 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME  376 (694)
Q Consensus       338 ~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l  376 (694)
                      +|++|++++|+|+.+++. +..+++|+.|++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence            455555555555555442 45556666666666655543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.51  E-value=0.00011  Score=54.96  Aligned_cols=37  Identities=41%  Similarity=0.575  Sum_probs=16.2

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCC
Q psy8879         169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT  206 (694)
Q Consensus       169 ~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~  206 (694)
                      +|++|++++|+|+.+++ .++++++|++|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence            34444444444444432 24444444444444444443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.24  E-value=0.0011  Score=72.65  Aligned_cols=51  Identities=16%  Similarity=0.217  Sum_probs=25.3

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccC-CCCCCCCcchhcCCCCCccEEEccCC
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISS-GELKNISDGAFIGLSSPLQALGLPNN  153 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~-n~i~~i~~~~F~~l~~~L~~L~Ls~N  153 (694)
                      .++.|+++++.++.+| .+.  .+|++|.+++ +.++.++.    .++.+|++|++++|
T Consensus        53 ~l~~L~Is~c~L~sLP-~LP--~sLtsL~Lsnc~nLtsLP~----~LP~nLe~L~Ls~C  104 (426)
T PRK15386         53 ASGRLYIKDCDIESLP-VLP--NELTEITIENCNNLTTLPG----SIPEGLEKLTVCHC  104 (426)
T ss_pred             CCCEEEeCCCCCcccC-CCC--CCCcEEEccCCCCcccCCc----hhhhhhhheEccCc
Confidence            5566666666666665 221  2466666654 33333321    12334555555555

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.22  E-value=0.0011  Score=72.68  Aligned_cols=134  Identities=20%  Similarity=0.293  Sum_probs=90.1

Q ss_pred             CCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccC-CCCCCCCccccccCCCCccEEEccCC-CCCCCCcccccCCCC
Q psy8879         116 EGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPN-NLLSVVPTSALAPLAPNLDRLDLSHN-QLYKLENTSFKGLSS  193 (694)
Q Consensus       116 ~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~-N~L~~lp~~~~~~l~~~L~~L~Ls~N-~L~~i~~~~f~~L~~  193 (694)
                      .+.+++.|++++|.++.++     .++.+|++|.+++ +.++.+|.. +   +++|++|++++| .+..++       .+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~-L---P~nLe~L~Ls~Cs~L~sLP-------~s  113 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGS-I---PEGLEKLTVCHCPEISGLP-------ES  113 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCch-h---hhhhhheEccCcccccccc-------cc
Confidence            4577899999999998886     3566799999988 467776642 2   368999999998 665554       35


Q ss_pred             ccEEEecCCCCCCCCccccCCC-CCCcEEeccCCccc-c-hhhhhhccCcccccccCCCCcCCCCCCCCCCCCcccccee
Q psy8879         194 LNFLDLSYNKLMTLSQDCLAPL-VTLRVLRLQGNRLT-V-SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL  270 (694)
Q Consensus       194 L~~L~Ls~N~l~~i~~~~f~~L-~~L~~L~Ls~N~l~-~-~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L  270 (694)
                      |+.|++.++....+     ..+ ++|+.|.+.+++.. . ..+..+  .++|++|++++|.... + |..+.  .+|+.|
T Consensus       114 Le~L~L~~n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-L-P~~LP--~SLk~L  182 (426)
T PRK15386        114 VRSLEIKGSATDSI-----KNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-L-PEKLP--ESLQSI  182 (426)
T ss_pred             cceEEeCCCCCccc-----ccCcchHhheecccccccccccccccc--CCcccEEEecCCCccc-C-ccccc--ccCcEE
Confidence            88888887765433     223 35778887543311 0 111111  1589999999887653 2 44344  588999


Q ss_pred             eccCCc
Q psy8879         271 SIAHNQ  276 (694)
Q Consensus       271 ~Ls~N~  276 (694)
                      +++.+.
T Consensus       183 ~ls~n~  188 (426)
T PRK15386        183 TLHIEQ  188 (426)
T ss_pred             Eecccc
Confidence            988764

>KOG3665|consensus

Probab=97.21  E-value=0.0002  Score=84.38  Aligned_cols=182  Identities=18%  Similarity=0.166  Sum_probs=105.7

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCC--------CCcchh------cCCCCCccEEEccCCCC-CCCCc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKN--------ISDGAF------IGLSSPLQALGLPNNLL-SVVPT  160 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~--------i~~~~F------~~l~~~L~~L~Ls~N~L-~~lp~  160 (694)
                      .++.+++.+..+..-.........|++|.+.+-....        ++--.+      .....+|++|++++... ..-.+
T Consensus        61 ~ltki~l~~~~~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~  140 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWP  140 (699)
T ss_pred             eeEEeeccceecchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHH
Confidence            4666677666665444344333446777765432211        110001      01123588888888642 22222


Q ss_pred             cccccCCCCccEEEccCCCCCCCC-cccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccc-hhhhhhcc
Q psy8879         161 SALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV-SVVAALQG  238 (694)
Q Consensus       161 ~~~~~l~~~L~~L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~~~~~~~  238 (694)
                      ..++.++|+|+.|.+++-.+..-. .....++++|..||+|+.+++.+  ..++.+++|+.|.+.+=.+.. ..-..+.+
T Consensus       141 ~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~  218 (699)
T KOG3665|consen  141 KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFN  218 (699)
T ss_pred             HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence            334444588888888876554322 12346778888888888888877  347788888888888766653 23345667


Q ss_pred             CcccccccCCCCcCCCCC--C---CCCCCCccccceeeccCCcccc
Q psy8879         239 LRSVTDLDLSHNLLAGPL--G---PSTVPRLSSLKVLSIAHNQFSS  279 (694)
Q Consensus       239 L~~L~~L~Ls~N~l~~~i--~---p~~~~~l~~L~~L~Ls~N~L~~  279 (694)
                      |++|+.||+|.......-  .   -+.-..+|+|+.||.|++.+.+
T Consensus       219 L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  219 LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            888888888877654310  0   0111235677777777665543

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=97.17  E-value=0.00034  Score=58.21  Aligned_cols=38  Identities=8%  Similarity=-0.001  Sum_probs=31.7

Q ss_pred             eeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         463 LRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       463 ~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .++.+..+|+| |.+|+..|+|.|+|.|+|..+.+....
T Consensus        31 ~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   69 (73)
T cd05852          31 SRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTG   69 (73)
T ss_pred             CCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEE
Confidence            45666777888 999999999999999999988776544

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=97.16  E-value=0.00068  Score=59.62  Aligned_cols=60  Identities=13%  Similarity=-0.030  Sum_probs=36.8

Q ss_pred             EEEEeccCcccc-ccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEe-eeccceeEEe
Q psy8879         444 EILALVPTLTSQ-PLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITL-YIDGDVIVQK  503 (694)
Q Consensus       444 ~i~~l~~~~~~~-~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~-~~~~~~~~~~  503 (694)
                      .+.|..+++... ...+...+..+-...++| |.+|+.+|+|.|+|.|+|.. ..++..+..+
T Consensus        32 ~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~   94 (96)
T cd05865          32 DISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVK   94 (96)
T ss_pred             EEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEE
Confidence            377877666532 112111111111112567 99999999999999999986 6666555433

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.00  E-value=0.00083  Score=55.72  Aligned_cols=35  Identities=20%  Similarity=0.090  Sum_probs=28.9

Q ss_pred             EEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         466 NVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       466 n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .+...++| |.+|+..|+|.|+|.|+|.++......
T Consensus        35 ~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   70 (74)
T cd05745          35 LVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVA   70 (74)
T ss_pred             EEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence            34456777 999999999999999999998876644

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=96.99  E-value=0.001  Score=57.99  Aligned_cols=59  Identities=15%  Similarity=-0.021  Sum_probs=39.1

Q ss_pred             cceeeeeceeE------EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         434 DQSALVLGCSE------ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       434 ~~~~~~l~c~~------i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      .+....+.|..      +.|..+++.....    ..|+.+..+|   +| |.+++.+|+|.|+|.|+|..+..
T Consensus        14 ~G~~v~l~C~~~G~P~~v~W~k~~g~~~~~----~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866          14 VGESKFFTCTAIGEPESIDWYNPQGEKIVS----SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             CCCeEEEEEEEEEeCCeEEEEeCCCeEecC----CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            33445555543      6777665543311    1344454444   56 99999999999999999998765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=96.95  E-value=0.0011  Score=54.52  Aligned_cols=52  Identities=4%  Similarity=-0.191  Sum_probs=35.7

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +.|...........     +..+..++.+ |.+++.+|+|.|+|.|+|.+++......
T Consensus        16 v~W~k~g~~~~~~~-----~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~   68 (71)
T cd05723          16 VKWVKNGDMVIPSD-----YFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQ   68 (71)
T ss_pred             EEEEECCeECCCCC-----CEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEE
Confidence            56665554443221     2344445555 8899999999999999999988766543

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=96.94  E-value=0.001  Score=55.70  Aligned_cols=53  Identities=9%  Similarity=-0.231  Sum_probs=34.6

Q ss_pred             EEEeccCccccccceeEeeeeEEeccc--EE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLG--TV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~g--tL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.|...+........  +..+...+.|  +| |.+++..|+|.|+|.++|..+++...
T Consensus        15 i~W~k~~~~i~~~~~--r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~   70 (75)
T cd05892          15 IFWKRNNEMVQYNTD--RISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCH   70 (75)
T ss_pred             EEEEECCEECcCCCC--eEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEE
Confidence            667776655442211  1222222333  56 99999999999999999998776543

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>KOG3665|consensus

Probab=96.93  E-value=0.00018  Score=84.75  Aligned_cols=134  Identities=22%  Similarity=0.195  Sum_probs=78.9

Q ss_pred             CccEEEccCCCCC-CCCcchhcCCCCCccEEEccCCCCCCCCc-cccccCCCCccEEEccCCCCCCCCcccccCCCCccE
Q psy8879         119 TLHGLVISSGELK-NISDGAFIGLSSPLQALGLPNNLLSVVPT-SALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNF  196 (694)
Q Consensus       119 ~L~~L~Ls~n~i~-~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~-~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~  196 (694)
                      +|++|++++...- .-+......++++|+.|.+++-.+..-.- ....++ ++|..||+|+.+++.+  ..+++|++|+.
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCCCccCc--HHHhccccHHH
Confidence            5777777654332 22222334455667877777766543321 123344 7788888888877766  34677777777


Q ss_pred             EEecCCCCCCC-CccccCCCCCCcEEeccCCcccchh------hhhhccCcccccccCCCCcCCCC
Q psy8879         197 LDLSYNKLMTL-SQDCLAPLVTLRVLRLQGNRLTVSV------VAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       197 L~Ls~N~l~~i-~~~~f~~L~~L~~L~Ls~N~l~~~~------~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      |.+.+=.+..- .-..+.+|.+|+.||++..+.....      -+.-..+|+|+.||.+++.+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            77766554431 1123556778888888776543211      11223477888888887776643

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=96.88  E-value=0.00061  Score=55.73  Aligned_cols=37  Identities=11%  Similarity=0.046  Sum_probs=30.5

Q ss_pred             eeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         464 RANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       464 ~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +..+...++| |.+++..|+|.|+|.|+|.++.+...+
T Consensus        29 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   66 (69)
T cd05746          29 KFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSM   66 (69)
T ss_pred             CEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEE
Confidence            3455667788 999999999999999999998876543

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=96.83  E-value=0.0012  Score=54.65  Aligned_cols=52  Identities=13%  Similarity=-0.100  Sum_probs=36.3

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +.|.........     ..+..+..+++| |.+|+.+|+|.|+|.++|..+.....+.
T Consensus        18 v~W~k~~~~~~~-----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   70 (73)
T cd04969          18 ISWSKGTELLTN-----SSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGS   70 (73)
T ss_pred             EEEEECCEEccc-----CCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEE
Confidence            455555443331     223345566777 9999999999999999999888766554

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=96.81  E-value=0.0011  Score=53.97  Aligned_cols=50  Identities=10%  Similarity=-0.152  Sum_probs=34.9

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +.|....+...      ..+..+.+.++| |.+++.+|+|.|+|.++|.++......
T Consensus        15 v~W~k~~~~~~------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   65 (69)
T cd05725          15 VLWRKEDGELP------KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASA   65 (69)
T ss_pred             EEEEECCccCC------CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEE
Confidence            55655543332      223344466777 999999999999999999988766543

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=96.75  E-value=0.0015  Score=54.65  Aligned_cols=51  Identities=8%  Similarity=-0.244  Sum_probs=34.4

Q ss_pred             EEEeccCccccccceeEeeeeEEec--cc--EE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTG--LG--TV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~--~g--tL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.|...+.......    .++.+..  .|  +| |.+++..|+|.|+|.|+|..+++...
T Consensus        15 v~W~k~~~~l~~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (75)
T cd05893          15 IFWKKENESLTHNT----DRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCT   70 (75)
T ss_pred             EEEEECCEECCCCC----CeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            66766665544211    2333332  23  46 99999999999999999998877553

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>KOG2123|consensus

Probab=96.71  E-value=0.00011  Score=75.31  Aligned_cols=82  Identities=27%  Similarity=0.297  Sum_probs=39.3

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchh-hhhhccCcccccccC
Q psy8879         169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV-VAALQGLRSVTDLDL  247 (694)
Q Consensus       169 ~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-~~~~~~L~~L~~L~L  247 (694)
                      +.+.|+..++.|+.|.  ....++.|+.|.|+-|.|+.+.+  |..+.+|++|+|+.|.|.... ..-+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3444555555444443  23345555555555555555443  445555555555555554321 122445555555555


Q ss_pred             CCCcCCC
Q psy8879         248 SHNLLAG  254 (694)
Q Consensus       248 s~N~l~~  254 (694)
                      ..|.-.|
T Consensus        96 ~ENPCc~  102 (388)
T KOG2123|consen   96 DENPCCG  102 (388)
T ss_pred             ccCCccc
Confidence            5554443

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=96.71  E-value=0.002  Score=52.99  Aligned_cols=34  Identities=9%  Similarity=-0.174  Sum_probs=28.2

Q ss_pred             ecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         468 TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ...++| |.+++.+|+|.|+|.|+|.++.+...+.
T Consensus        33 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   67 (71)
T cd05876          33 NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYT   67 (71)
T ss_pred             cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEE
Confidence            345677 9999999999999999999988766543

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=96.71  E-value=0.0035  Score=54.52  Aligned_cols=25  Identities=12%  Similarity=-0.078  Sum_probs=21.8

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      ++| |.+|+..|+|.|+|.++|..+.
T Consensus        57 ~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977          57 STLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             EEEEEecCCcccCEEEEEEEEcCCCC
Confidence            356 9999999999999999998654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=96.66  E-value=0.0013  Score=56.50  Aligned_cols=29  Identities=14%  Similarity=0.106  Sum_probs=24.8

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      .+|.| |.+|+..|+|.|||.|+|++-+..
T Consensus        45 ~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~   74 (85)
T cd05853          45 SAGDLMIRSIQLKHAGKYVCMVQTSVDKLS   74 (85)
T ss_pred             CCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence            45666 999999999999999999886653

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=96.65  E-value=0.002  Score=56.55  Aligned_cols=28  Identities=11%  Similarity=0.107  Sum_probs=24.8

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      .+|.| |.+|+.+|+|.|+|.|+|.+-+.
T Consensus        58 ~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          58 TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            47999 99999999999999999987444

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=96.65  E-value=0.0014  Score=54.40  Aligned_cols=36  Identities=11%  Similarity=-0.034  Sum_probs=28.5

Q ss_pred             eeEEecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         464 RANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       464 ~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ++.....|+| |.+++.+|+|.|+|.|+|..+..-..
T Consensus        31 ~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~   67 (74)
T cd05738          31 RIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSA   67 (74)
T ss_pred             CEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcc
Confidence            3445566777 88999999999999999999875443

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=96.65  E-value=0.0034  Score=54.52  Aligned_cols=31  Identities=16%  Similarity=0.045  Sum_probs=26.6

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ++| |.+|+.+|+|.|+|.|+|.++.+...+.
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~   93 (96)
T cd05732          62 SSLTLKDVQLTDAGRYDCEASNRIGGDQQSMY   93 (96)
T ss_pred             EEEEECcCCcCcCEEeEEEEEeCCCCcEEEEE
Confidence            456 9999999999999999999998866543

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=96.64  E-value=0.0033  Score=54.21  Aligned_cols=34  Identities=12%  Similarity=-0.110  Sum_probs=27.7

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      ++| |.+++.+|+|.|+|.|+|..+.....+...+
T Consensus        47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V   81 (88)
T cd05735          47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTV   81 (88)
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEE
Confidence            445 8889999999999999999998876655443

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=96.63  E-value=0.0031  Score=55.28  Aligned_cols=32  Identities=16%  Similarity=0.155  Sum_probs=27.4

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      ++| |.+|+..|+|.|+|.|+|.++.+...+..
T Consensus        63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   95 (97)
T cd05869          63 SSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYL   95 (97)
T ss_pred             EEEEEecCccCcCEEEEEEEecCCCCeeEEEEE
Confidence            456 99999999999999999999988776543

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=96.61  E-value=0.0026  Score=53.42  Aligned_cols=36  Identities=14%  Similarity=-0.021  Sum_probs=29.2

Q ss_pred             eeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         463 LRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       463 ~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      .+..+..+|+| |.+++.+|+|.|+|.|+|.++.+.+
T Consensus        36 ~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   72 (79)
T cd05734          36 GRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS   72 (79)
T ss_pred             CCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence            34555566887 9999999999999999999887633

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=96.60  E-value=0.0035  Score=51.76  Aligned_cols=53  Identities=15%  Similarity=0.040  Sum_probs=36.3

Q ss_pred             EEEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         444 EILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       444 ~i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .+.|..+++......    .+..+...++| |.+++.+|.|.|+|.|+|..+++...+
T Consensus        17 ~v~W~~~~~~~~~~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   70 (74)
T cd05764          17 AIHWISPDGKLISNS----SRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATV   70 (74)
T ss_pred             EEEEEeCCCEEecCC----CeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEE
Confidence            367776554433111    12334456777 999999999999999999988765543

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=96.54  E-value=0.0032  Score=53.63  Aligned_cols=30  Identities=13%  Similarity=-0.007  Sum_probs=25.1

Q ss_pred             ecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         468 TGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      ...|+| |.+++..|+|.|+|.|+|.+....
T Consensus        44 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~   74 (85)
T cd04970          44 DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS   74 (85)
T ss_pred             cccceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence            456777 999999999999999999776543

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=96.52  E-value=0.0031  Score=52.61  Aligned_cols=27  Identities=0%  Similarity=-0.430  Sum_probs=23.5

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      +| |.+++.+|+|.|+|.++|.++....
T Consensus        42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   69 (75)
T cd05744          42 CLLIQNANKEDAGWYTVSAVNEAGVVSC   69 (75)
T ss_pred             EEEECCCCcccCEEEEEEEEcCCCcEEE
Confidence            45 9999999999999999998876554

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>KOG2739|consensus

Probab=96.51  E-value=0.0017  Score=66.38  Aligned_cols=15  Identities=40%  Similarity=0.727  Sum_probs=6.9

Q ss_pred             CCCccccceeeccCC
Q psy8879         261 VPRLSSLKVLSIAHN  275 (694)
Q Consensus       261 ~~~l~~L~~L~Ls~N  275 (694)
                      +..+++|+.|.++.|
T Consensus        61 ~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDN   75 (260)
T ss_pred             CCCcchhhhhcccCC
Confidence            334444444444444

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=96.50  E-value=0.0036  Score=53.97  Aligned_cols=38  Identities=18%  Similarity=-0.134  Sum_probs=30.7

Q ss_pred             eeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         462 SLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       462 ~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ..++.+...++| |.+|+.+|+|.|+|.++|.++.....
T Consensus        38 ~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726          38 SSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTK   76 (90)
T ss_pred             CCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence            345666667788 99999999999999999988765443

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=96.50  E-value=0.0038  Score=53.48  Aligned_cols=33  Identities=15%  Similarity=0.104  Sum_probs=26.9

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ..|+| |.+|+..|+|.|+|.|+|.++++.....
T Consensus        45 ~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~   78 (85)
T cd05854          45 TIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT   78 (85)
T ss_pred             eEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence            34677 9999999999999999998876655433

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>KOG2123|consensus

Probab=96.49  E-value=0.00031  Score=71.98  Aligned_cols=84  Identities=27%  Similarity=0.323  Sum_probs=48.4

Q ss_pred             CcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccc-hhhhccccccc
Q psy8879         239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTLSH  317 (694)
Q Consensus       239 L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~-~~f~~l~~L~~  317 (694)
                      +.+.+.|++.++.+.+   -..+..++.|+.|.|+-|+|+.+.+  |..|++|++|+|..|.|..+.. .-+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            4456666666666654   2334556666666666666666543  5566666666666666655442 22345555555


Q ss_pred             ccCCCCcccc
Q psy8879         318 LDLAHNRIVA  327 (694)
Q Consensus       318 L~Ls~N~L~~  327 (694)
                      |.|..|.-.+
T Consensus        93 LWL~ENPCc~  102 (388)
T KOG2123|consen   93 LWLDENPCCG  102 (388)
T ss_pred             HhhccCCccc
Confidence            5555555433

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=96.46  E-value=0.005  Score=52.17  Aligned_cols=55  Identities=5%  Similarity=-0.110  Sum_probs=34.4

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +.|...........+....+.. .+.++| |.+++.+|+|.|+|.|+|..+.....+
T Consensus        26 i~W~k~g~~l~~~~~~~~~~~~-~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   81 (85)
T cd05857          26 MRWLKNGKEFKQEHRIGGYKVR-NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   81 (85)
T ss_pred             EEEEECCEECCCCCceeeeEEe-CCceEEEEccCCcccCEEEEEEEEeCCCEEEEEE
Confidence            5666544443322222222222 233455 889999999999999999998866544

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=96.41  E-value=0.0051  Score=50.97  Aligned_cols=31  Identities=13%  Similarity=-0.161  Sum_probs=25.3

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .+.| |.+++.+|+|.|+|.|+|..+....-.
T Consensus        39 ~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~   70 (75)
T cd05763          39 DDVFFIVDVKIEDTGVYSCTAQNTAGSISANA   70 (75)
T ss_pred             CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeE
Confidence            3556 899999999999999999987655433

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG2739|consensus

Probab=96.38  E-value=0.002  Score=65.81  Aligned_cols=104  Identities=25%  Similarity=0.295  Sum_probs=64.2

Q ss_pred             CccccceeeccCCcccccccccccCCcccceecccCC--ccccccchhhhcccccccccCCCCccccccc-cchhccccc
Q psy8879         263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN--QIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNL  339 (694)
Q Consensus       263 ~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N--~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~-~~f~~l~~L  339 (694)
                      ....|+.|.+.+..++.+.  .|..+++|++|.++.|  ++..--......+++|++|++++|+|..+.. ..+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3445666666666666553  4567788888888888  4332112223445888888888888775321 224566777


Q ss_pred             CeeecCCCCCCCcCh---hhhCCCCCCCEEEc
Q psy8879         340 TTLDLSHNFLRALTQ---DLITPLKSLQELRL  368 (694)
Q Consensus       340 ~~L~Ls~N~L~~l~~---~~~~~l~~L~~L~L  368 (694)
                      ..|++.+|..+.+..   ..|.-+++|+.||-
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            788888887666442   34455666666643

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=96.34  E-value=0.0083  Score=52.63  Aligned_cols=30  Identities=10%  Similarity=0.007  Sum_probs=26.1

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ++| |.+|+.+|+|.|+|.|+|.++.+.+.+
T Consensus        64 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   94 (98)
T cd05870          64 SSLHIKDVKLSDSGRYDCEAASRIGGHQKSM   94 (98)
T ss_pred             eEEEEeeCCcCCCEEEEEEEeccCCcceeEE
Confidence            466 999999999999999999999876644

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=96.33  E-value=0.0063  Score=51.56  Aligned_cols=38  Identities=8%  Similarity=0.015  Sum_probs=29.6

Q ss_pred             eEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         465 ANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       465 ~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      ..+..+++| |.+++..|+|.|+|.++|.++......++
T Consensus        45 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~   83 (86)
T cd05724          45 VRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAAR   83 (86)
T ss_pred             EEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence            344446778 99999999999999999998876554433

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=96.31  E-value=0.0059  Score=53.55  Aligned_cols=58  Identities=17%  Similarity=0.170  Sum_probs=41.7

Q ss_pred             cceeeeeceeE--------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCC-cceeEEEEEeee
Q psy8879         434 DQSALVLGCSE--------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNY-DPNCLLTITLYI  495 (694)
Q Consensus       434 ~~~~~~l~c~~--------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G-~YtC~~~n~~~~  495 (694)
                      ++-...|.|..        +.|........    ..+.|+.+..+|.| |.+|+.+|.| .|+|.|+|.+-.
T Consensus        17 eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i----~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          17 EGDSVVLPCNPPKSAVPLRIYWMNSDLLHI----TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             cCCCEEEEecCCCCCCCCEEEEECCCCccc----cccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence            34445566752        77775432222    13678899999999 9999999999 799999998633

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=96.25  E-value=0.0054  Score=52.08  Aligned_cols=32  Identities=13%  Similarity=-0.079  Sum_probs=26.8

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      .+.| |.+++..|+|.|+|+|+|..+++..-++
T Consensus        45 ~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~   77 (81)
T cd04971          45 HGCLQFDNPTHVNNGNYTLVASNEYGQDSKSIS   77 (81)
T ss_pred             EEEEEECCCCcccCeEEEEEEEeCCCCeeeEEE
Confidence            3456 8999999999999999999988776554

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=96.19  E-value=0.01  Score=51.25  Aligned_cols=29  Identities=10%  Similarity=-0.011  Sum_probs=24.6

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.| |.+|+..|+|.|+|+|+|..+.....
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~s   84 (90)
T cd04974          55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHS   84 (90)
T ss_pred             ceEEEeccccccCcEEEEEeecccCcccCC
Confidence            345 99999999999999999999876553

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=96.14  E-value=0.007  Score=52.43  Aligned_cols=30  Identities=3%  Similarity=-0.242  Sum_probs=25.6

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +| |.+++..|+|.|+|.++|..+.+...+.
T Consensus        59 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05737          59 SLTIKGVSSEDSGKYGIVVKNKYGGETVDVT   89 (92)
T ss_pred             EEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence            55 9999999999999999998887766544

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=96.12  E-value=0.0067  Score=52.72  Aligned_cols=55  Identities=2%  Similarity=-0.194  Sum_probs=35.5

Q ss_pred             EEEeccCccccccceeEeeeeEEec--ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTG--LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~--~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      +.|...++......+   .......  .++| |.+++.+|+|.|+|.|+|..+.+..-+..
T Consensus        33 i~W~k~~~~~~~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   90 (92)
T cd05891          33 VIWFKNDQDIELSEH---YSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV   90 (92)
T ss_pred             EEEEECCEECCCCCC---EEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence            667666554442221   1122222  2355 99999999999999999988887765543

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=96.12  E-value=0.0066  Score=51.37  Aligned_cols=57  Identities=9%  Similarity=-0.113  Sum_probs=37.1

Q ss_pred             EEEeccCccccccceeEeeee---EEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRA---NVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~---n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +.|........+..++.....   +....++| |.+++..|+|.|+|.|+|..+.+.+-+.
T Consensus        15 i~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~   75 (79)
T cd05855          15 LQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVS   75 (79)
T ss_pred             eEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEE
Confidence            566666655543332211111   11234566 9999999999999999999998776554

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=96.09  E-value=0.008  Score=51.76  Aligned_cols=61  Identities=10%  Similarity=-0.070  Sum_probs=39.7

Q ss_pred             cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ++....+.|.+       +.|..........     .++... .+.| |.+++..|+|.|+|.|+|.++.+....
T Consensus        15 ~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~-----~~~~~~-~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   83 (88)
T cd05851          15 KGQNVTLECFALGNPVPVIRWRKILEPMPAT-----AEISMS-GAVLKIFNIQPEDEGTYECEAENIKGKDKHQA   83 (88)
T ss_pred             CCCcEEEEEEecccCCCEEEEEECCcCCCCC-----CEEecC-CCEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence            33445566766       5666654433211     122232 3455 999999999999999999998866544

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=96.07  E-value=0.0066  Score=50.42  Aligned_cols=30  Identities=17%  Similarity=0.127  Sum_probs=25.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .++| |.+++..|+|.|+|.|+|..+.++..
T Consensus        43 ~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~   73 (76)
T cd05895          43 SSELQISKASLADNGEYKCMVSSKLGNDSVT   73 (76)
T ss_pred             EEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence            3555 99999999999999999999776554

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=96.05  E-value=0.008  Score=49.68  Aligned_cols=33  Identities=15%  Similarity=-0.163  Sum_probs=26.7

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ..+.| |.+|+..|+|.|+|.|+|..+....-+.
T Consensus        39 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~   72 (76)
T cd04978          39 DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF   72 (76)
T ss_pred             cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence            34666 9999999999999999999877655443

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=96.02  E-value=0.0075  Score=52.39  Aligned_cols=28  Identities=11%  Similarity=-0.127  Sum_probs=24.4

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      ++| |.+|+..|+|.|+|.|+|.++...+
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          55 RTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             CEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            466 9999999999999999999986544

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=95.99  E-value=0.0098  Score=51.28  Aligned_cols=29  Identities=14%  Similarity=0.072  Sum_probs=24.6

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ++| |.+|+.+|+|.|+|+|+|.++....-
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   84 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHS   84 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccce
Confidence            456 99999999999999999999865443

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=95.97  E-value=0.007  Score=49.23  Aligned_cols=32  Identities=16%  Similarity=-0.017  Sum_probs=26.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      .++| |.+|+..|+|.|+|.|+|..+.....+.
T Consensus        35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   67 (71)
T cd05731          35 NKTLKIDNVSEEDDGEYRCTASNSLGSARHTIS   67 (71)
T ss_pred             CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEE
Confidence            3566 9999999999999999999887655443

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=95.91  E-value=0.0099  Score=49.44  Aligned_cols=31  Identities=13%  Similarity=-0.213  Sum_probs=25.8

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .++| |.+++..|+|.|+|.++|..+......
T Consensus        40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   71 (76)
T cd05867          40 SGALILTDVQPSDTAVYQCEARNRHGNLLANA   71 (76)
T ss_pred             CCEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence            4666 999999999999999999887765443

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=95.85  E-value=0.014  Score=50.05  Aligned_cols=31  Identities=6%  Similarity=-0.211  Sum_probs=26.7

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ++| |.+++..|+|.|+|.|+|..+.+..-+.
T Consensus        52 ~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894          52 SSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            456 9999999999999999999998776554

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=95.80  E-value=0.015  Score=50.05  Aligned_cols=31  Identities=6%  Similarity=-0.049  Sum_probs=26.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .++| |.+++..|.|.|+|+|+|..++....+
T Consensus        55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~   86 (90)
T cd04972          55 IYNLQLSNITSETQTTVTCTAENPVGQANVSV   86 (90)
T ss_pred             EEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence            3456 999999999999999999998866654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=95.78  E-value=0.012  Score=49.89  Aligned_cols=29  Identities=10%  Similarity=-0.016  Sum_probs=24.6

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ++| |.+|+.+|+|.|+|.|+|.+.+..+.
T Consensus        49 s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s   78 (84)
T cd05742          49 STLTIPNATLKDSGTYTCAASSGTMDQKES   78 (84)
T ss_pred             EEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence            456 99999999999999999998765543

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=95.77  E-value=0.013  Score=48.96  Aligned_cols=35  Identities=14%  Similarity=-0.062  Sum_probs=28.5

Q ss_pred             EEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         466 NVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       466 n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .+.+.++| |.+++.+|+|.|+|.++|.++....-+
T Consensus        42 ~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   77 (81)
T cd05765          42 VVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF   77 (81)
T ss_pred             EEccccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence            44455777 999999999999999999988765544

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=95.76  E-value=0.012  Score=48.85  Aligned_cols=31  Identities=13%  Similarity=0.079  Sum_probs=27.0

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      +| |.+++..|.|.|+|.++|..+.++..++.
T Consensus        40 ~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (76)
T cd05736          40 ELHISNVRYEDTGAYTCIAKNEAGVDEDISSL   71 (76)
T ss_pred             EEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence            45 99999999999999999999888876654

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=95.71  E-value=0.014  Score=50.53  Aligned_cols=30  Identities=10%  Similarity=-0.113  Sum_probs=25.1

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .++| |.+++.+|+|.|+|+++|..+.....
T Consensus        58 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   88 (92)
T cd05747          58 KSTFEISKVQMSDEGNYTVVVENSEGKQEAQ   88 (92)
T ss_pred             eeEEEECCCCcccCEeEEEEEEcCCCCEeEE
Confidence            3566 99999999999999999988776554

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=95.69  E-value=0.012  Score=49.39  Aligned_cols=30  Identities=10%  Similarity=-0.134  Sum_probs=24.5

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ++| |.+++..|+|.|+|+++|..+.+...+
T Consensus        45 ~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973          45 EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            455 999999999999999999876654443

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=95.69  E-value=0.018  Score=49.38  Aligned_cols=29  Identities=17%  Similarity=0.040  Sum_probs=23.9

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ++| |.+++.+|+|.|+|.++|........
T Consensus        50 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~   79 (86)
T cd05862          50 STLTIENVTLSDLGRYTCTASSGQMIAKNS   79 (86)
T ss_pred             eEEEEecCCcccCEEEEEEEeecceEeccc
Confidence            566 89999999999999999976655443

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=95.69  E-value=0.011  Score=49.28  Aligned_cols=34  Identities=12%  Similarity=-0.161  Sum_probs=27.2

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      ++| +.+++..|+|.|+|.|+|..+...+.....+
T Consensus        41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868          41 DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            455 8899999999999999999887766555443

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=95.63  E-value=0.025  Score=47.29  Aligned_cols=27  Identities=7%  Similarity=-0.310  Sum_probs=23.5

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      .++| |.+++.+|+|.|+|.|+|..+..
T Consensus        37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   64 (77)
T cd05760          37 ERTLTLRSAGPDDSGLYYCCAHNAFGSV   64 (77)
T ss_pred             CCEEEEeeCCcccCEEEEEEEEeCCCeE
Confidence            4566 99999999999999999987764

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=95.60  E-value=0.03  Score=49.08  Aligned_cols=31  Identities=13%  Similarity=-0.045  Sum_probs=24.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      +++| |.+|+.+|+|.|+|.+..  .+..+..++
T Consensus        61 ~~~L~I~nV~~~D~G~YtC~~~t--~~~~~~~~~   92 (95)
T cd05882          61 ELIISISNVQLSDEGEYTCSIFT--MPVRTAKAT   92 (95)
T ss_pred             eEEEEECCCCcccCEEEEEEEEe--eccccEEEE
Confidence            4566 999999999999999988  444444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=95.58  E-value=0.02  Score=48.95  Aligned_cols=30  Identities=10%  Similarity=-0.095  Sum_probs=25.5

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      ..++| |.+|+.+|+|.|+|.+.|.++....
T Consensus        51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   81 (88)
T cd04968          51 SGAVLKIPNIQFEDEGTYECEAENIKGKDTH   81 (88)
T ss_pred             eCCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence            45676 9999999999999999998887543

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=95.57  E-value=0.016  Score=47.78  Aligned_cols=54  Identities=6%  Similarity=-0.183  Sum_probs=35.2

Q ss_pred             EEEeccCccccccceeEeeeeEEe-cccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVT-GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~-~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +.|...........+   ..+... ..++| |.+++.+|+|.|+|.|+|..+.+...+.
T Consensus        16 v~W~k~g~~l~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05748          16 VTWSKDGKPLKLSGR---VQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN   71 (74)
T ss_pred             EEEEECCEEcCCCCe---EEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence            667665554432221   122222 23456 9999999999999999999887766544

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>KOG3513|consensus

Probab=95.55  E-value=0.013  Score=70.27  Aligned_cols=66  Identities=14%  Similarity=0.034  Sum_probs=51.9

Q ss_pred             eeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeEEeecc
Q psy8879         436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTN  506 (694)
Q Consensus       436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~  506 (694)
                      ....+.|..       +.|+...+.     .....|+.+..+|+| |.+++-+|+|.|||.|+|..+.+..-.+....+
T Consensus       442 ~~v~i~C~~~asP~p~~~W~k~~~~-----~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd  515 (1051)
T KOG3513|consen  442 GTVTIDCKPFASPKPKVSWLKGGEK-----LLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD  515 (1051)
T ss_pred             CeEEEeeccCCCCcceEEEEcCCcc-----cccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEec
Confidence            445667755       667776653     446788899999999 999999999999999999998887766555443

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=95.54  E-value=0.021  Score=50.21  Aligned_cols=35  Identities=6%  Similarity=-0.337  Sum_probs=28.3

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      .+.| |.+++..|+|.|+|.|+|..+.+...+....
T Consensus        55 ~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V   90 (98)
T cd05762          55 SSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTV   90 (98)
T ss_pred             eeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEE
Confidence            4555 9999999999999999999988776554433

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=95.50  E-value=0.013  Score=48.27  Aligned_cols=33  Identities=9%  Similarity=-0.236  Sum_probs=26.6

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .++| |.+++..|+|.|+|.++|..+...+.+..
T Consensus        34 ~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~   67 (71)
T cd04976          34 GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTF   67 (71)
T ss_pred             CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEE
Confidence            4566 99999999999999999988766554443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=95.46  E-value=0.016  Score=50.30  Aligned_cols=33  Identities=12%  Similarity=0.035  Sum_probs=27.3

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      ++| |.+++..|+|.|+|.|+|.++.....+...
T Consensus        58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~   91 (95)
T cd05730          58 SEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK   91 (95)
T ss_pred             CEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence            345 899999999999999999999876655544

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=95.40  E-value=0.019  Score=50.95  Aligned_cols=31  Identities=6%  Similarity=-0.185  Sum_probs=26.2

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ++| |..|+.+|+|.|||+|+|..+.+...+.
T Consensus        65 ~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~   96 (101)
T cd04975          65 SELKLVRLKESEAGTYTFLASNSDASKSLTFE   96 (101)
T ss_pred             EEEEEeecCHhhCeeEEEEEECCCccEEEEEE
Confidence            556 9999999999999999999987665443

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=95.40  E-value=0.012  Score=48.57  Aligned_cols=30  Identities=10%  Similarity=-0.156  Sum_probs=25.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .+.| |.+++.+|+|.|+|.|+|.++..+..
T Consensus        33 ~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~   63 (70)
T cd05864          33 GVHLTIYEVTEKDAGNYTVVLTNPITKEEQR   63 (70)
T ss_pred             CCEEEECcCCHHHCEEEEEEEEECCCceeeE
Confidence            4456 89999999999999999999876543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=95.37  E-value=0.022  Score=46.83  Aligned_cols=31  Identities=13%  Similarity=0.009  Sum_probs=25.7

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .++| |.+++..|.|.|+|.|+|.++.+...+
T Consensus        42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750          42 NSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             eEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            3455 999999999999999999998765543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=95.35  E-value=0.0075  Score=49.30  Aligned_cols=31  Identities=10%  Similarity=-0.261  Sum_probs=25.9

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ++| |.++..+|+|.|+|.|+|..+..+.-+.
T Consensus        31 ~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~   62 (67)
T cd05863          31 HSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS   62 (67)
T ss_pred             CEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence            455 9999999999999999999987655444

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=95.33  E-value=0.021  Score=47.70  Aligned_cols=31  Identities=6%  Similarity=-0.184  Sum_probs=25.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .++| |.+++..|+|.|+|.++|..+.....+
T Consensus        47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~   78 (82)
T cd05856          47 KWTLSLKNLKPEDSGKYTCHVSNRAGEINATY   78 (82)
T ss_pred             eEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence            3556 899999999999999999988655443

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=95.25  E-value=0.027  Score=49.13  Aligned_cols=38  Identities=11%  Similarity=-0.095  Sum_probs=27.4

Q ss_pred             eEEecccEE-EEEEE-ecCCCcceeEEEEEeeeccceeEEe
Q psy8879         465 ANVTGLGTV-QVYVQ-LWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       465 ~n~~~~gtL-~~~v~-~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      ..+.+ |.| |.++. ..|+|.|+|.|+|.++...+..++.
T Consensus        53 ~~~~~-g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          53 YTLVA-GNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             EEEEC-CeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            33443 555 66755 6999999999999999876655443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=95.21  E-value=0.026  Score=48.74  Aligned_cols=49  Identities=12%  Similarity=0.012  Sum_probs=32.6

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEEEEEEEecCCCcceeEEEEE----eeecc
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTIT----LYIDG  497 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL~~~v~~~d~G~YtC~~~n~----~~~~~  497 (694)
                      +.|...........    .+..+.+.+.+|.+|+.+|+|.|+|.+.+-    .|...
T Consensus        27 i~W~~ng~~i~~~~----~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~~~~~~~~~   79 (87)
T cd05873          27 VVWKFDGKVLTPES----AKYLLYRDGLLIFNASEADAGRYQCLSVEKSKAKLFTQT   79 (87)
T ss_pred             EEEEECCEECCCCC----ceEEEECCcEEEeCCCHHHCEEEEEEEEecccCceeEeE
Confidence            55555544443221    234455555559999999999999999987    66543

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=95.16  E-value=0.029  Score=48.91  Aligned_cols=60  Identities=8%  Similarity=-0.054  Sum_probs=37.1

Q ss_pred             eeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEE-ecCCCcceeEEEEEeeeccceeEE
Q psy8879         438 LVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQ-LWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       438 ~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~-~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      ..+.|.+       +.|...+.......    .+..+. .|.| |.++. ..|+|.|+|.|+|.++.....-++
T Consensus        22 v~l~C~a~G~P~P~i~W~k~~~~i~~~~----~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~   90 (93)
T cd05849          22 VSVNCRARANPFPIYKWRKNNLDIDLTN----DRYSMV-GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREAT   90 (93)
T ss_pred             EEEeCcCccCCCCEEEEEECCEEccCCC----CeEEEE-CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEE
Confidence            5566665       66655443332111    123333 4666 77774 689999999999998876554433

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.04  E-value=0.03  Score=47.68  Aligned_cols=55  Identities=5%  Similarity=-0.098  Sum_probs=34.3

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +.|...........+ ....... ...+| |.+|+.+|+|.|+|.|+|..+....-+.
T Consensus        32 v~W~~~~~~l~~~~~-~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~   87 (90)
T PF07679_consen   32 VTWYKNGRPLTSSQR-YQIESDG-GSSSLTIKNVTREDAGTYTCVASNSSGEATASVN   87 (90)
T ss_dssp             EEEEETTEEEESSSS-EEEEEET-TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEE
T ss_pred             ccccccccceeeeee-eeeeccc-ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEE
Confidence            666666444442111 1111111 34455 9999999999999999998776655443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=95.02  E-value=0.024  Score=47.40  Aligned_cols=27  Identities=19%  Similarity=-0.037  Sum_probs=22.9

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      .++| |.+++..|+|.|+|.++|..+..
T Consensus        41 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743          41 YGTLTIRDVKESDQGAYTCEAINTRGMV   68 (78)
T ss_pred             EEEEEECCCChHHCEEEEEEEEecCCEE
Confidence            3567 88999999999999999976643

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>KOG1947|consensus

Probab=94.99  E-value=0.0082  Score=67.48  Aligned_cols=109  Identities=26%  Similarity=0.182  Sum_probs=51.5

Q ss_pred             CCccEEEccCC-CCCCCC-ccccccCCCCccEEEccCC--CCCCCC---cccccCCCCccEEEecCCC-CCCCCccccCC
Q psy8879         143 SPLQALGLPNN-LLSVVP-TSALAPLAPNLDRLDLSHN--QLYKLE---NTSFKGLSSLNFLDLSYNK-LMTLSQDCLAP  214 (694)
Q Consensus       143 ~~L~~L~Ls~N-~L~~lp-~~~~~~l~~~L~~L~Ls~N--~L~~i~---~~~f~~L~~L~~L~Ls~N~-l~~i~~~~f~~  214 (694)
                      +.|+.|.+..+ .+.... ....... +.|+.|+++++  .+....   ......+.+|+.|+++.+. +++..-..+..
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKC-PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhC-chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            34666666554 333311 1122233 56666666652  111111   1122344566666666655 44443333332


Q ss_pred             -CCCCcEEeccCCc-ccchh-hhhhccCcccccccCCCCcC
Q psy8879         215 -LVTLRVLRLQGNR-LTVSV-VAALQGLRSVTDLDLSHNLL  252 (694)
Q Consensus       215 -L~~L~~L~Ls~N~-l~~~~-~~~~~~L~~L~~L~Ls~N~l  252 (694)
                       +++|++|.+.++. ++... ......+++|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             5667776655555 33322 22233456677777765544

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=94.95  E-value=0.031  Score=47.94  Aligned_cols=51  Identities=16%  Similarity=-0.074  Sum_probs=33.2

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEEEEEEEecCCCcceeEEEEEeeec
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      +.|........... ....+......+..|.+++.+|+|.|+|++++..++.
T Consensus        27 i~W~k~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   77 (89)
T cd04979          27 VVWLFQGGPLQRKE-EPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQ   77 (89)
T ss_pred             EEEEECCccccccc-CcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccce
Confidence            55655554333111 1123445555566699999999999999999987743

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=94.93  E-value=0.03  Score=49.68  Aligned_cols=54  Identities=13%  Similarity=-0.147  Sum_probs=33.8

Q ss_pred             EEEeccCcccccccee-EeeeeEE---ecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         445 ILALVPTLTSQPLSYV-TSLRANV---TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i-~~~~~n~---~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      +.|...+....+.... .....++   ...++| |..++.+|+|.|||.|+|..+....
T Consensus        35 v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~   93 (101)
T cd05859          35 IRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY   93 (101)
T ss_pred             eEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence            6677766655533221 1111111   112456 9999999999999999999776543

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=94.92  E-value=0.046  Score=47.24  Aligned_cols=20  Identities=10%  Similarity=-0.224  Sum_probs=17.6

Q ss_pred             EecCCCcceeEEEEEeeecc
Q psy8879         478 QLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       478 ~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.+|+|.|+|.++|.++...
T Consensus        72 ~~~D~G~Y~C~a~N~~G~~~   91 (100)
T cd07693          72 GRSDEGVYVCVAHNSLGEAV   91 (100)
T ss_pred             CcCcCEEEEEEEEcccccee
Confidence            68899999999999998743

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=94.81  E-value=0.048  Score=47.34  Aligned_cols=52  Identities=13%  Similarity=-0.126  Sum_probs=32.0

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEE-----EecCCCcceeEEEEE-eeeccce
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYV-----QLWTNYDPNCLLTIT-LYIDGDV  499 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v-----~~~d~G~YtC~~~n~-~~~~~~~  499 (694)
                      +.|...........   ..+.....+|++ +.++     +..|+|.|+|.|+|. .+...+.
T Consensus        31 i~W~k~g~~l~~~~---~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~   89 (95)
T cd05722          31 IEWKKDGVLLNLVS---DERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSR   89 (95)
T ss_pred             EEEEECCeECcccc---CcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEe
Confidence            56665444333111   122334556666 6666     478999999999999 7765443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=94.75  E-value=0.041  Score=47.98  Aligned_cols=57  Identities=14%  Similarity=0.083  Sum_probs=35.2

Q ss_pred             eeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEE-ecCCCcceeEEEEEeeecc
Q psy8879         437 ALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQ-LWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       437 ~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~-~~d~G~YtC~~~n~~~~~~  497 (694)
                      ...+.|.+       +.|........ ...  ..+..+.+ |.| |.++. ..|+|.|+|.|+|.++...
T Consensus        21 ~v~l~C~~~G~P~P~i~W~k~g~~l~-~~~--~~~~~~~~-g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          21 KVILNCEARGNPVPTYRWLRNGTEID-TES--DYRYSLID-GNLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             EEEEEEEeeecCCCEEEEEECCeECc-cCC--CceEEeeC-CeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            35566665       66665443332 111  12344444 555 77774 6899999999999998763

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>KOG4341|consensus

Probab=94.74  E-value=0.0019  Score=69.78  Aligned_cols=133  Identities=20%  Similarity=0.146  Sum_probs=63.8

Q ss_pred             cCcccccccCCCCcCCCCCC-CCCCCCccccceeeccCCc-ccccccccc-cCCcccceecccCCcccccc--chhhhcc
Q psy8879         238 GLRSVTDLDLSHNLLAGPLG-PSTVPRLSSLKVLSIAHNQ-FSSVRRGAL-AGLDKLTSLSCHHNQIDVLE--DHSFRAL  312 (694)
Q Consensus       238 ~L~~L~~L~Ls~N~l~~~i~-p~~~~~l~~L~~L~Ls~N~-L~~i~~~~~-~~L~~L~~L~Ls~N~L~~i~--~~~f~~l  312 (694)
                      ++..|+.|+.+++.-.+... ...-.+.++|+.|.++.++ ++..-...+ .+.+.|+.+++.......-.  ...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            34556666666554321100 0111334667777776664 222211111 24456777776666442111  0111245


Q ss_pred             cccccccCCCCcccccc-----ccchhcccccCeeecCCCCCC-CcChhhhCCCCCCCEEEccC
Q psy8879         313 STLSHLDLAHNRIVAVS-----GASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDD  370 (694)
Q Consensus       313 ~~L~~L~Ls~N~L~~i~-----~~~f~~l~~L~~L~Ls~N~L~-~l~~~~~~~l~~L~~L~Ls~  370 (694)
                      +.|+.|.|+++.+..-.     ...-..+..|+.+.|++.... +-.-+.+..+++|+.+++-+
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence            66777777766532211     111124456667777776543 22334455566677666654

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=94.65  E-value=0.03  Score=46.49  Aligned_cols=28  Identities=18%  Similarity=-0.198  Sum_probs=22.9

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      ++| |.+|+.+|+|.|+|.++|..+...+
T Consensus        36 ~~L~I~~v~~~D~G~YtC~a~~~~~~~~~   64 (72)
T cd07702          36 YSLVIKDVTEEDAGIYTILLGIKQYNLFK   64 (72)
T ss_pred             CEEEECcCCHHHCEEEEEEEEccccceEe
Confidence            456 9999999999999999997554433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=94.53  E-value=0.067  Score=45.55  Aligned_cols=24  Identities=8%  Similarity=-0.067  Sum_probs=21.2

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      .+| |.+++..|+|.|+|.++|...
T Consensus        46 s~L~I~~~~~~DsG~Y~C~a~n~~~   70 (84)
T cd05861          46 STLTFPHATVEDSGTYECAAHESTQ   70 (84)
T ss_pred             EEEEECCCCcCCCEEEEEEEEECcc
Confidence            456 999999999999999999765

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=94.51  E-value=0.049  Score=45.59  Aligned_cols=32  Identities=9%  Similarity=-0.175  Sum_probs=22.9

Q ss_pred             ecccEE-EEEEEe----cCCCcceeEEEEEeeeccce
Q psy8879         468 TGLGTV-QVYVQL----WTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       468 ~~~gtL-~~~v~~----~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .++|+| |..+..    .|+|+|+|.|+|.++...+.
T Consensus        36 ~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874          36 PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            346777 444543    47899999999988875543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=94.37  E-value=0.06  Score=48.18  Aligned_cols=41  Identities=12%  Similarity=-0.142  Sum_probs=33.6

Q ss_pred             ceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         458 SYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       458 ~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      +...+.|..+..+|+| |.+|+..|+|.|+|.+.+.-+..++
T Consensus        57 gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~   98 (105)
T cd05774          57 GPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQ   98 (105)
T ss_pred             CcccCCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEE
Confidence            3345678888989988 9999999999999999998755443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=94.34  E-value=0.026  Score=44.82  Aligned_cols=45  Identities=9%  Similarity=-0.057  Sum_probs=26.9

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLL  489 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~  489 (694)
                      +.|...++.............+......| |.+|+..|+|.|+|+|
T Consensus        19 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   19 VTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             EEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            67777776665222222111111111125 9999999999999987

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>KOG4308|consensus

Probab=94.33  E-value=0.0023  Score=72.44  Aligned_cols=182  Identities=30%  Similarity=0.290  Sum_probs=93.9

Q ss_pred             ccEEEccCCCCCCCCc----ccccCCCCccEEEecCCCCCCCCcc----ccCCC-CCCcEEeccCCcccch----hhhhh
Q psy8879         170 LDRLDLSHNQLYKLEN----TSFKGLSSLNFLDLSYNKLMTLSQD----CLAPL-VTLRVLRLQGNRLTVS----VVAAL  236 (694)
Q Consensus       170 L~~L~Ls~N~L~~i~~----~~f~~L~~L~~L~Ls~N~l~~i~~~----~f~~L-~~L~~L~Ls~N~l~~~----~~~~~  236 (694)
                      +..|.|.+|.+..-..    ..+..++.|+.|++++|.+.+....    .+... ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4455555555543322    2334455666666666666532221    12222 4456666666666532    33445


Q ss_pred             ccCcccccccCCCCcCCCC---CCCC----CCCCccccceeeccCCcccccc----cccccCCcc-cceecccCCccccc
Q psy8879         237 QGLRSVTDLDLSHNLLAGP---LGPS----TVPRLSSLKVLSIAHNQFSSVR----RGALAGLDK-LTSLSCHHNQIDVL  304 (694)
Q Consensus       237 ~~L~~L~~L~Ls~N~l~~~---i~p~----~~~~l~~L~~L~Ls~N~L~~i~----~~~~~~L~~-L~~L~Ls~N~L~~i  304 (694)
                      .....++.++++.|.+...   ..+.    .+....++++|.+++|.++...    ...+...+. +.+|++..|++...
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            5566677777777766310   0011    1223456677777777665321    122333344 55677777776533


Q ss_pred             c----chhhhcc-cccccccCCCCcccccccc----chhcccccCeeecCCCCCCC
Q psy8879         305 E----DHSFRAL-STLSHLDLAHNRIVAVSGA----SLAHLSNLTTLDLSHNFLRA  351 (694)
Q Consensus       305 ~----~~~f~~l-~~L~~L~Ls~N~L~~i~~~----~f~~l~~L~~L~Ls~N~L~~  351 (694)
                      .    ...+..+ +.++.++++.|.|++-...    .+..++.++.|.+++|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            1    1122333 4557777777777654433    23345667777777777654

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=94.28  E-value=0.062  Score=45.71  Aligned_cols=29  Identities=10%  Similarity=-0.088  Sum_probs=24.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      .+.| |.+++..|+|.|+|.|+|..+....
T Consensus        50 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05728          50 AGDLRITKLSLSDSGMYQCVAENKHGTIYA   79 (85)
T ss_pred             CCEEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence            3456 9999999999999999998876544

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=94.20  E-value=0.096  Score=47.01  Aligned_cols=34  Identities=15%  Similarity=-0.044  Sum_probs=27.2

Q ss_pred             cEE-EEEEE-ecCCCcceeEEEEEeeeccceeEEee
Q psy8879         471 GTV-QVYVQ-LWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       471 gtL-~~~v~-~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      ++| |.+++ .+|.|.|+|.|+|.++.+...+...+
T Consensus        69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~  104 (109)
T cd05773          69 SILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVS  104 (109)
T ss_pred             eEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEe
Confidence            456 77887 58999999999999999876665544

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=94.13  E-value=0.04  Score=48.12  Aligned_cols=31  Identities=13%  Similarity=-0.003  Sum_probs=26.5

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +++| |.+++.+|+|.|+|.++|..+.+...+
T Consensus        59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~   90 (94)
T cd05756          59 KDLLWFLPAALEDSGLYTCVVRNSTYCMKVSI   90 (94)
T ss_pred             CCeEEEccCCcccCeEEEEEEcCCCccEEEEE
Confidence            4676 999999999999999999887766554

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=94.12  E-value=0.092  Score=42.93  Aligned_cols=27  Identities=7%  Similarity=0.167  Sum_probs=20.9

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.| |.++  +|+|.|+|.|+|.++.....
T Consensus        38 ~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~   65 (69)
T cd05739          38 NVLELTNI--YESANYTCVAISSLGMIEAT   65 (69)
T ss_pred             cEEEEecc--ccCeeEEEEEEeCCCEEEEE
Confidence            345 6665  58999999999999876544

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=93.91  E-value=0.11  Score=45.30  Aligned_cols=31  Identities=13%  Similarity=-0.098  Sum_probs=23.4

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ++.+| |.+|+.+|+|.|+|.+.+  +......+
T Consensus        60 ~~~sL~I~~v~~~DsG~Y~C~~~t--~~~~~~~~   91 (95)
T cd07701          60 HELSISISDVSLSDEGQYTCSLFT--MPVKTSKA   91 (95)
T ss_pred             CcEEEEECcCCcccCEEEEEEeEe--ecCccEEE
Confidence            34566 999999999999999997  34444433

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>KOG1947|consensus

Probab=93.63  E-value=0.015  Score=65.32  Aligned_cols=110  Identities=25%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             CCccEEEccCC-CCCCCC-cccccCCCCccEEEecCC-C-CCCCC---ccccCCCCCCcEEeccCCc-ccchhhhhhcc-
Q psy8879         168 PNLDRLDLSHN-QLYKLE-NTSFKGLSSLNFLDLSYN-K-LMTLS---QDCLAPLVTLRVLRLQGNR-LTVSVVAALQG-  238 (694)
Q Consensus       168 ~~L~~L~Ls~N-~L~~i~-~~~f~~L~~L~~L~Ls~N-~-l~~i~---~~~f~~L~~L~~L~Ls~N~-l~~~~~~~~~~-  238 (694)
                      +.|+.|.+..+ .+.... .......+.|+.|+++++ . +....   ......+++|+.|+++.+. ++...-..+.. 
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            56666666655 233211 123345667777777652 1 11111   1122334566677776665 44333333332 


Q ss_pred             CcccccccCCCCc-CCCCCCCCCCCCccccceeeccCCcc
Q psy8879         239 LRSVTDLDLSHNL-LAGPLGPSTVPRLSSLKVLSIAHNQF  277 (694)
Q Consensus       239 L~~L~~L~Ls~N~-l~~~i~p~~~~~l~~L~~L~Ls~N~L  277 (694)
                      +++|+.|.+.++. +++.--......+++|++|+++++..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            5666666655554 33211011223455666666665543

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=93.63  E-value=0.069  Score=44.53  Aligned_cols=32  Identities=13%  Similarity=-0.058  Sum_probs=23.8

Q ss_pred             ecccEE-EEEEE----ecCCCcceeEEEEEeeeccce
Q psy8879         468 TGLGTV-QVYVQ----LWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       468 ~~~gtL-~~~v~----~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .+.|+| |.+++    .+|+|.|+|.|+|.++.+.+.
T Consensus        36 ~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05733          36 PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISN   72 (77)
T ss_pred             CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcc
Confidence            346777 55554    368999999999999876543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=93.51  E-value=0.075  Score=46.29  Aligned_cols=25  Identities=20%  Similarity=0.017  Sum_probs=21.7

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      ..+.| |.+|+..|+|.|+|.++|..
T Consensus        50 ~~~~L~I~~v~~~DsG~YtC~~~n~~   75 (92)
T cd05757          50 KGSKLLIQNVTEEDAGNYTCKLTFTH   75 (92)
T ss_pred             cCCEEEEeeCChhhCEEEEEEEEecC
Confidence            55666 99999999999999999863

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=93.31  E-value=0.17  Score=42.20  Aligned_cols=25  Identities=8%  Similarity=-0.128  Sum_probs=21.7

Q ss_pred             EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      |.+++..|.|.|+|.++|..+....
T Consensus        55 i~~~~~~d~g~Y~C~~~n~~g~~~~   79 (85)
T cd05729          55 LESVVPSDSGKYTCIVENKYGSINH   79 (85)
T ss_pred             EeECCcccCEEEEEEEEECCceEEE
Confidence            8899999999999999998766544

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=93.23  E-value=0.12  Score=45.24  Aligned_cols=30  Identities=17%  Similarity=0.022  Sum_probs=25.3

Q ss_pred             EE-EEEEEecC-CCcceeEEEEEeeeccceeE
Q psy8879         472 TV-QVYVQLWT-NYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       472 tL-~~~v~~~d-~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +| |.+|+.+| .|.|+|.|+|..+.+...+.
T Consensus        65 ~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~   96 (98)
T cd05758          65 TLTISNTQESDFQTSYNCTAWNSFGSGTAIIS   96 (98)
T ss_pred             EEEECCccccccceeEEEEEEcCCCcccEEEE
Confidence            55 88999855 89999999999999877654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=93.12  E-value=0.098  Score=45.04  Aligned_cols=27  Identities=11%  Similarity=-0.076  Sum_probs=21.6

Q ss_pred             cEE-EEEEE-ecCCCcceeEEEEEeeecc
Q psy8879         471 GTV-QVYVQ-LWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       471 gtL-~~~v~-~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.| |.++. ..|+|.|+|.|+|.++...
T Consensus        58 ~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          58 GNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            455 77776 4899999999999988644

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=93.10  E-value=0.17  Score=43.95  Aligned_cols=33  Identities=15%  Similarity=-0.064  Sum_probs=24.7

Q ss_pred             eeeEEecccEEEEEEEecCCCcceeEEEEEeee
Q psy8879         463 LRANVTGLGTVQVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       463 ~~~n~~~~gtL~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      .+....+.+..|.+++..|+|+|+|.+++-.+.
T Consensus        46 ~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~   78 (91)
T cd05871          46 ERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFS   78 (91)
T ss_pred             ccEEEecCeEEEeeCChhHCEEEEEEEEccCCe
Confidence            344555445459999999999999999965444

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=93.02  E-value=0.23  Score=42.15  Aligned_cols=38  Identities=8%  Similarity=-0.111  Sum_probs=30.7

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccceeEEeecc
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTN  506 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~  506 (694)
                      -.++| |..+...|.|.|+|.|.|..+..+..-.+.+|+
T Consensus        41 ~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~   79 (80)
T cd05885          41 VSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLD   79 (80)
T ss_pred             EEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEe
Confidence            34667 777777778889999999999988887777765

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=92.97  E-value=0.13  Score=41.41  Aligned_cols=28  Identities=18%  Similarity=0.137  Sum_probs=21.7

Q ss_pred             eeEEecccEE-EEEEEecCCCcceeEEEE
Q psy8879         464 RANVTGLGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       464 ~~n~~~~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +......++| +.+|+.+|.|.|+|+|+|
T Consensus        47 ~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   47 RGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3344445566 778999999999999997

...

>KOG4341|consensus

Probab=92.90  E-value=0.013  Score=63.57  Aligned_cols=274  Identities=18%  Similarity=0.086  Sum_probs=155.7

Q ss_pred             CeeEEEcCCCC---CCCCCccccCCCCccEEEccCCC-CCCCCcchhcCCCCCccEEEccCC-CCCCCCccccccCCCCc
Q psy8879          96 RVSLLDCTLSN---VTVLPGKFLEGVTLHGLVISSGE-LKNISDGAFIGLSSPLQALGLPNN-LLSVVPTSALAPLAPNL  170 (694)
Q Consensus        96 ~L~~Ldls~n~---l~~lp~~~~~~~~L~~L~Ls~n~-i~~i~~~~F~~l~~~L~~L~Ls~N-~L~~lp~~~~~~l~~~L  170 (694)
                      .++.|.+.+..   ...+-..-...+++++|.+.++. +++..-..+......|++|+|..+ .++...-..+..-+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            45555555433   23333444567888888887664 333333445556777999999884 45554333222223889


Q ss_pred             cEEEccCC-CCCCCCc-ccccCCCCccEEEec--------------------------CC-CCCCCCc-cccCCCCCCcE
Q psy8879         171 DRLDLSHN-QLYKLEN-TSFKGLSSLNFLDLS--------------------------YN-KLMTLSQ-DCLAPLVTLRV  220 (694)
Q Consensus       171 ~~L~Ls~N-~L~~i~~-~~f~~L~~L~~L~Ls--------------------------~N-~l~~i~~-~~f~~L~~L~~  220 (694)
                      ++|+++.+ .|++-.. ..+.+...++.+.+.                          ++ .+++..- ..-..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            99999877 3433110 112333333333333                          32 1222221 11123457788


Q ss_pred             EeccCCcc-cchhhhhh-ccCcccccccCCCCcCCCCCCCCCC-CCccccceeeccCCcccccc--cccccCCcccceec
Q psy8879         221 LRLQGNRL-TVSVVAAL-QGLRSVTDLDLSHNLLAGPLGPSTV-PRLSSLKVLSIAHNQFSSVR--RGALAGLDKLTSLS  295 (694)
Q Consensus       221 L~Ls~N~l-~~~~~~~~-~~L~~L~~L~Ls~N~l~~~i~p~~~-~~l~~L~~L~Ls~N~L~~i~--~~~~~~L~~L~~L~  295 (694)
                      |..+++.. +.....++ .+..+|+.|.++.++.-+......+ .+++.|+.+++.++......  ...-.+++.|++|.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            88776543 32333333 3568999999998874322212222 35688999999887654221  11224678999999


Q ss_pred             ccCCcccccc-----chhhhcccccccccCCCCcccc-ccccchhcccccCeeecCCCCC-CC-cChhhhCCCCCCCEEE
Q psy8879         296 CHHNQIDVLE-----DHSFRALSTLSHLDLAHNRIVA-VSGASLAHLSNLTTLDLSHNFL-RA-LTQDLITPLKSLQELR  367 (694)
Q Consensus       296 Ls~N~L~~i~-----~~~f~~l~~L~~L~Ls~N~L~~-i~~~~f~~l~~L~~L~Ls~N~L-~~-l~~~~~~~l~~L~~L~  367 (694)
                      |+++.+-.-.     ...-..+..|+.+.|+++.... ..-+.+..+++|+.++|-+.+- +. -....-..++++++..
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            9988543221     1222456789999999998643 3334567789999999888753 22 2222334577777665


Q ss_pred             cc
Q psy8879         368 LD  369 (694)
Q Consensus       368 Ls  369 (694)
                      +-
T Consensus       459 ~~  460 (483)
T KOG4341|consen  459 YF  460 (483)
T ss_pred             hc
Confidence            54

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=92.89  E-value=0.14  Score=39.29  Aligned_cols=25  Identities=16%  Similarity=0.069  Sum_probs=20.8

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      ..+.| +.+++..|+|.|+|.++|..
T Consensus        37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408       37 SGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCcEEEEeeCCcccCEEEEEEEecCC
Confidence            34455 99999999999999998854

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=92.84  E-value=0.16  Score=42.45  Aligned_cols=32  Identities=13%  Similarity=-0.039  Sum_probs=22.9

Q ss_pred             ecccEE-EEEEE----ecCCCcceeEEEEEeeeccce
Q psy8879         468 TGLGTV-QVYVQ----LWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       468 ~~~gtL-~~~v~----~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ..+|+| |.++.    ..|+|+|+|.|+|.++...+-
T Consensus        36 ~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875          36 RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            345777 55553    246999999999999865543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=92.47  E-value=0.22  Score=44.34  Aligned_cols=36  Identities=14%  Similarity=-0.049  Sum_probs=27.4

Q ss_pred             eeEEecccEEEEEEEecCCCcceeEEEEEeeeccce
Q psy8879         464 RANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       464 ~~n~~~~gtL~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      |+...++-..|.+++.+|+|.|+|+++|.-+-+.--
T Consensus        64 Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~   99 (104)
T cd05896          64 RMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCMKVS   99 (104)
T ss_pred             eEEEeCCEEEEEeCChhhCeEEEEEECCCCcceEEE
Confidence            555554444499999999999999999987655433

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=92.15  E-value=0.16  Score=44.62  Aligned_cols=25  Identities=24%  Similarity=0.165  Sum_probs=21.6

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      +.++| |.+|+.+|+|.|||.+++..
T Consensus        53 ~~~~L~I~~v~~~D~G~YtC~~~~~~   78 (95)
T cd05897          53 GSTYLHIIDVSLNDSGYYTCKLQFTH   78 (95)
T ss_pred             CCCEEEEEEcChhhCEEEEEEEEEee
Confidence            34566 99999999999999999984

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=92.12  E-value=0.14  Score=43.93  Aligned_cols=55  Identities=13%  Similarity=0.056  Sum_probs=40.1

Q ss_pred             eeeeeceeE------EEEeccCccccccceeEeeeeEEecccEEEEEEEecCCCcceeEEEEEeee
Q psy8879         436 SALVLGCSE------ILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       436 ~~~~l~c~~------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      ....|.|..      +.|...+....     .+.++..+.+|.+|..++.+|+|.|.|.+.--.|.
T Consensus        12 ~~v~L~C~~~s~~A~v~W~~ng~~l~-----~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~   72 (85)
T cd05872          12 ADVVLPCQLRSNLASPVWLFNGTPLN-----AQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQ   72 (85)
T ss_pred             CCEEEECCCCCCCccEEEEECCcccC-----CCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCe
Confidence            334556654      67777665554     23567788999999999999999999998754443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=91.90  E-value=0.33  Score=42.85  Aligned_cols=32  Identities=13%  Similarity=-0.019  Sum_probs=26.4

Q ss_pred             cEE-EEEEEecC-CCcceeEEEEEeeeccceeEE
Q psy8879         471 GTV-QVYVQLWT-NYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       471 gtL-~~~v~~~d-~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      ++| |.++..+| .|.|.|.|+|+.+++...+..
T Consensus        64 S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          64 STLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence            345 88888777 799999999999999887653

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=91.79  E-value=0.11  Score=45.93  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=20.9

Q ss_pred             cccEE-EEEEEecCCCcceeEEEE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +|++| |.+++.+|+|.|+|.+.+
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t   84 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFAT   84 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEe
Confidence            45677 999999999999999999

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=91.78  E-value=0.29  Score=50.03  Aligned_cols=23  Identities=13%  Similarity=-0.091  Sum_probs=20.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .++| |.+|+.+|+|.|+|.++..
T Consensus       187 ~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        187 NSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             CCEEEECcCCHHhCEEEEEEEEEe
Confidence            3466 9999999999999999986

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=91.67  E-value=0.22  Score=43.13  Aligned_cols=24  Identities=17%  Similarity=-0.006  Sum_probs=20.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      +.+| |.+|+.+|+|.|+|.+++..
T Consensus        61 ~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717          61 ELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             eeEEEEccCCcccCEEEEEEEecCC
Confidence            3455 99999999999999998654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=91.59  E-value=0.073  Score=47.21  Aligned_cols=36  Identities=11%  Similarity=0.047  Sum_probs=27.1

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      ++.+| |.+|+.+|+|+|.|.+.+..+...+.+..+.
T Consensus        66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V  102 (106)
T cd05714          66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEV  102 (106)
T ss_pred             CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEE
Confidence            34455 9999999999999999987655555554443

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=91.52  E-value=0.075  Score=40.46  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             CCccccccccccccc-ccCCccCccccCCccc
Q psy8879         387 MDLELIYSGVWRHST-LLIPVMLSLCTRSSVV  417 (694)
Q Consensus       387 CdC~l~~~~~wl~~~-~~~~~~~~~C~~~~~~  417 (694)
                      |||++.||..|+... .+.....+.|..+...
T Consensus         5 CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~   36 (51)
T smart00082        5 CDCELRWLLRWLQANEHLQDPVSLRCASPSSL   36 (51)
T ss_pred             CcCCchHHHHHHHhCCccCCCCCCEeCCcHHH
Confidence            999999999999762 2334457999877654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.32  E-value=0.077  Score=33.26  Aligned_cols=11  Identities=55%  Similarity=0.637  Sum_probs=4.3

Q ss_pred             cEEEccCCCCC
Q psy8879         171 DRLDLSHNQLY  181 (694)
Q Consensus       171 ~~L~Ls~N~L~  181 (694)
                      ++|||++|+|+
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=91.09  E-value=0.082  Score=44.79  Aligned_cols=29  Identities=24%  Similarity=0.057  Sum_probs=24.8

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      +++| |.+++.+|+|.|+|.++|..+....
T Consensus        51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754          51 NGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             CCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            4667 9999999999999999998876654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.08  E-value=0.17  Score=32.87  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=14.1

Q ss_pred             CCCCEEEccCCCCCCCCccccc
Q psy8879         361 KSLQELRLDDNDISMEPECIYV  382 (694)
Q Consensus       361 ~~L~~L~Ls~N~L~~l~~~~f~  382 (694)
                      ++|+.|+|++|+|+.+|+++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4566666666666666666653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.08  E-value=0.17  Score=32.87  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=14.1

Q ss_pred             CCCCEEEccCCCCCCCCccccc
Q psy8879         361 KSLQELRLDDNDISMEPECIYV  382 (694)
Q Consensus       361 ~~L~~L~Ls~N~L~~l~~~~f~  382 (694)
                      ++|+.|+|++|+|+.+|+++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4566666666666666666653

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=91.07  E-value=0.11  Score=45.94  Aligned_cols=36  Identities=11%  Similarity=-0.027  Sum_probs=28.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEEeec
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNT  505 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~  505 (694)
                      +.+| |.+++.+|+|+|.|.+++...+....+..++-
T Consensus        67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          67 DASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             cEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence            4456 99999999999999999877776666655443

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=90.83  E-value=0.15  Score=44.60  Aligned_cols=26  Identities=8%  Similarity=0.014  Sum_probs=21.2

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      .+| |.+|+.+|+|+|+|.+.+.-.-.
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~   91 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFYE   91 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcEE
Confidence            345 99999999999999999854433

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=90.78  E-value=0.17  Score=44.56  Aligned_cols=22  Identities=9%  Similarity=-0.022  Sum_probs=19.8

Q ss_pred             ccEE-EEEEEecCCCcceeEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      ++.| |.+|+.+|+|+|+|.+.+
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~   85 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVIT   85 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEe
Confidence            4556 999999999999999988

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>KOG4308|consensus

Probab=90.56  E-value=0.0084  Score=67.91  Aligned_cols=182  Identities=27%  Similarity=0.258  Sum_probs=84.0

Q ss_pred             ccEEEccCCCCCCCCc----cccccCCCCccEEEccCCCCCCCCcc----cccCC-CCccEEEecCCCCCCCCc----cc
Q psy8879         145 LQALGLPNNLLSVVPT----SALAPLAPNLDRLDLSHNQLYKLENT----SFKGL-SSLNFLDLSYNKLMTLSQ----DC  211 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~----~~~~~l~~~L~~L~Ls~N~L~~i~~~----~f~~L-~~L~~L~Ls~N~l~~i~~----~~  211 (694)
                      +..|.|.+|.+..-..    .++... +.|+.|++++|.+......    .+... ..|++|++..|.++....    ..
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            4445555555443222    122233 4555555555555421111    11111 344555555555544322    22


Q ss_pred             cCCCCCCcEEeccCCcccc----hhhhhh----ccCcccccccCCCCcCCCCCC---CCCCCCccc-cceeeccCCcccc
Q psy8879         212 LAPLVTLRVLRLQGNRLTV----SVVAAL----QGLRSVTDLDLSHNLLAGPLG---PSTVPRLSS-LKVLSIAHNQFSS  279 (694)
Q Consensus       212 f~~L~~L~~L~Ls~N~l~~----~~~~~~----~~L~~L~~L~Ls~N~l~~~i~---p~~~~~l~~-L~~L~Ls~N~L~~  279 (694)
                      +.....++.++++.|.+..    ..+..+    ....+++.|.+.++.++....   ...+...+. +.+|++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            3334556666666665521    112222    235566666666666542100   011222233 4556666666654


Q ss_pred             cc----cccccCC-cccceecccCCccccccch----hhhcccccccccCCCCcccc
Q psy8879         280 VR----RGALAGL-DKLTSLSCHHNQIDVLEDH----SFRALSTLSHLDLAHNRIVA  327 (694)
Q Consensus       280 i~----~~~~~~L-~~L~~L~Ls~N~L~~i~~~----~f~~l~~L~~L~Ls~N~L~~  327 (694)
                      ..    ...+..+ ..+++++++.|.|+.....    .+..++.++.|.+++|.+..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            31    1123333 4566777777776644332    23345567777777776654

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=90.40  E-value=0.23  Score=44.80  Aligned_cols=46  Identities=9%  Similarity=0.083  Sum_probs=33.5

Q ss_pred             eeEeeeeEEec------ccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         459 YVTSLRANVTG------LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       459 ~i~~~~~n~~~------~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      ..+..|+.+.+      +-+| +.+|+.+|+|+|.|.+.....+.++.+..+.
T Consensus        54 ~~y~gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V  106 (110)
T cd05902          54 KAFQGRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEV  106 (110)
T ss_pred             hhcccEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEE
Confidence            33455555543      3355 9999999999999999997777776665543

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=90.25  E-value=0.31  Score=41.27  Aligned_cols=29  Identities=3%  Similarity=-0.173  Sum_probs=21.2

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +.| +..+  .|+|+|+|+|+|.++......+
T Consensus        49 s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a   78 (81)
T cd05749          49 SVLNVPGL--NETSKFSCEAHNAKGVTTSRTG   78 (81)
T ss_pred             CEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence            445 4444  6899999999999887665444

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=90.23  E-value=0.13  Score=46.89  Aligned_cols=31  Identities=16%  Similarity=0.059  Sum_probs=24.4

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ++.++ |.+|+.+|.|+|+|.+.|.--..+..
T Consensus        78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~  109 (116)
T cd05879          78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKS  109 (116)
T ss_pred             CeeEEEEccCCcccCEEEEEEEEcCCCcCCce
Confidence            45556 99999999999999999866544443

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=90.17  E-value=0.28  Score=41.61  Aligned_cols=25  Identities=16%  Similarity=0.040  Sum_probs=21.7

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      +.+ |.+++.+|+|.|+|.+++..+.
T Consensus        48 ~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753          48 SNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             ceEEECccCHHHCEEEEEEEEeCCce
Confidence            445 8899999999999999998764

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=90.14  E-value=0.36  Score=43.99  Aligned_cols=36  Identities=11%  Similarity=0.003  Sum_probs=29.9

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      ++-+| |.+++.+|+|.|.|.+..-.++.++.+..+.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V  113 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV  113 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence            34555 9999999999999999999888888776554

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=90.13  E-value=0.16  Score=43.41  Aligned_cols=33  Identities=12%  Similarity=-0.105  Sum_probs=27.9

Q ss_pred             EeeeeEEecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         461 TSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       461 ~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      ...|.++..+++| |.+++.+|+|.|+|.+....
T Consensus        47 ~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741          47 YSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             cCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            4556777777888 99999999999999998764

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=89.92  E-value=0.17  Score=31.62  Aligned_cols=16  Identities=25%  Similarity=0.486  Sum_probs=8.0

Q ss_pred             cceeeccCCccccccc
Q psy8879         267 LKVLSIAHNQFSSVRR  282 (694)
Q Consensus       267 L~~L~Ls~N~L~~i~~  282 (694)
                      |++|+|++|+++.+++
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=89.53  E-value=0.3  Score=42.31  Aligned_cols=23  Identities=13%  Similarity=0.059  Sum_probs=19.9

Q ss_pred             cccEE-EEEEEecCCCcceeEEEE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      ++.+| |.+|+.+|+|.|.|.+..
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~   83 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFAT   83 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEe
Confidence            35566 999999999999999874

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.44  E-value=0.3  Score=31.71  Aligned_cols=23  Identities=43%  Similarity=0.550  Sum_probs=17.9

Q ss_pred             ccccCeeecCCCCCCCcChhhhC
Q psy8879         336 LSNLTTLDLSHNFLRALTQDLIT  358 (694)
Q Consensus       336 l~~L~~L~Ls~N~L~~l~~~~~~  358 (694)
                      +++|+.|+|++|+|+.+++..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35788888888888888877664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.44  E-value=0.3  Score=31.71  Aligned_cols=23  Identities=43%  Similarity=0.550  Sum_probs=17.9

Q ss_pred             ccccCeeecCCCCCCCcChhhhC
Q psy8879         336 LSNLTTLDLSHNFLRALTQDLIT  358 (694)
Q Consensus       336 l~~L~~L~Ls~N~L~~l~~~~~~  358 (694)
                      +++|+.|+|++|+|+.+++..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35788888888888888877664

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=88.89  E-value=0.48  Score=39.76  Aligned_cols=20  Identities=5%  Similarity=-0.232  Sum_probs=17.4

Q ss_pred             EEEEEEEecCCCcceeEEEEE
Q psy8879         472 TVQVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL~~~v~~~d~G~YtC~~~n~  492 (694)
                      ..+.++ ..|+|+|+|.+.|.
T Consensus        49 l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          49 YRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             EEEeec-ccCCEEeEEECCCC
Confidence            348888 99999999999885

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=88.73  E-value=0.11  Score=45.48  Aligned_cols=24  Identities=4%  Similarity=-0.212  Sum_probs=21.6

Q ss_pred             EEEEEecCCCcceeEEEEEeeecc
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      |.+++.+|+|+|+|.|.|+..+++
T Consensus        69 I~~l~~sDsgtY~C~v~~~~~~~~   92 (94)
T cd07690          69 IKNLKIEDSDTYICEVEDKKEEVE   92 (94)
T ss_pred             ECCCCHHHCEEEEEEECCccceEE
Confidence            999999999999999999876654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.59  E-value=0.27  Score=28.81  Aligned_cols=15  Identities=27%  Similarity=0.452  Sum_probs=5.7

Q ss_pred             CCCEEEccCCCCCCC
Q psy8879         362 SLQELRLDDNDISME  376 (694)
Q Consensus       362 ~L~~L~Ls~N~L~~l  376 (694)
                      +|+.|+|++|+|+.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344555555554433

...

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=88.16  E-value=0.49  Score=42.81  Aligned_cols=33  Identities=9%  Similarity=-0.064  Sum_probs=25.3

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      +-+| |++++.+|+|+|.|.+..-+-+....+..
T Consensus        73 ~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l  106 (112)
T cd05900          73 DATLEITELRSNDSGTYRCEVMHGIEDNYDTVEV  106 (112)
T ss_pred             CcEEEEeecccccCEEEEEEEecCCCCceeEEEE
Confidence            4455 99999999999999999665555555443

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.15  E-value=0.29  Score=28.67  Aligned_cols=16  Identities=63%  Similarity=0.746  Sum_probs=7.9

Q ss_pred             ccCeeecCCCCCCCcC
Q psy8879         338 NLTTLDLSHNFLRALT  353 (694)
Q Consensus       338 ~L~~L~Ls~N~L~~l~  353 (694)
                      +|+.|+|++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666777777666553

...

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=88.12  E-value=0.27  Score=43.25  Aligned_cols=23  Identities=13%  Similarity=-0.201  Sum_probs=19.9

Q ss_pred             cccEE-EEEEEecCCCcceeEEEE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      ++++| |.+|+.+|+|.|+|.+..
T Consensus        58 ~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887          58 LDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CccEEEEeCCCccccEEEEEEEEe
Confidence            46677 999999999999999865

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>smart00409 IG Immunoglobulin

Probab=87.96  E-value=1.5  Score=35.47  Aligned_cols=24  Identities=17%  Similarity=-0.057  Sum_probs=20.0

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      .+| +.+++..|+|.|+|.+.+...
T Consensus        51 ~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00409       51 STLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             eEEEEEeeccccCeEEEEEEEcCCC
Confidence            455 999999999999999995543

>smart00410 IG_like Immunoglobulin like

Probab=87.96  E-value=1.5  Score=35.47  Aligned_cols=24  Identities=17%  Similarity=-0.057  Sum_probs=20.0

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      .+| +.+++..|+|.|+|.+.+...
T Consensus        51 ~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00410       51 STLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             eEEEEEeeccccCeEEEEEEEcCCC
Confidence            455 999999999999999995543

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=87.51  E-value=0.29  Score=44.33  Aligned_cols=26  Identities=12%  Similarity=-0.024  Sum_probs=21.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      +.+| |.+++.+|+|+|+|.|.|.--.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence            3455 9999999999999999985543

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>KOG0473|consensus

Probab=87.33  E-value=0.06  Score=54.35  Aligned_cols=95  Identities=16%  Similarity=0.174  Sum_probs=65.8

Q ss_pred             ccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhh
Q psy8879         277 FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL  356 (694)
Q Consensus       277 L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~  356 (694)
                      +++++-..+......+.||++.|++-.+.. -|+-++.|..||++.|.+.-. |..+.....+..+++.+|..+..|-. 
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p~s-  106 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQPKS-  106 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCCcc-
Confidence            344444445555667777777777765554 366677778888888877666 45567777777788888887777643 


Q ss_pred             hCCCCCCCEEEccCCCCC
Q psy8879         357 ITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       357 ~~~l~~L~~L~Ls~N~L~  374 (694)
                      +...++++.+++.+|++.
T Consensus       107 ~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  107 QKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccccCCcchhhhccCcch
Confidence            667888888888887754

>KOG4222|consensus

Probab=87.12  E-value=0.57  Score=56.69  Aligned_cols=66  Identities=9%  Similarity=-0.038  Sum_probs=45.0

Q ss_pred             eceeEEEEeccCccccccceeEeeeeEEecccEEEEEEEecCCCcceeEEEEEeeeccceeEEeeccC
Q psy8879         440 LGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNC  507 (694)
Q Consensus       440 l~c~~i~~l~~~~~~~~~~~i~~~~~n~~~~gtL~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~~  507 (694)
                      .-+..+.|+....-..  ..-...++.+++-..+|.||+-+|+|+|+|+++|.++..++..++-.++-
T Consensus       159 hpeptvSw~Kdg~pl~--~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e  224 (1281)
T KOG4222|consen  159 HPEPTVSWVKDGKPLD--HYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE  224 (1281)
T ss_pred             CCCCcceeecCCCccc--cccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeecc
Confidence            3444566666554433  11222333455444559999999999999999999999988887766653

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=86.79  E-value=0.29  Score=50.11  Aligned_cols=29  Identities=7%  Similarity=-0.159  Sum_probs=23.6

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      .++| |.+|+.+|+|.|+|+|+|....++.
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~  126 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEES  126 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEE
Confidence            4566 9999999999999999996654433

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=86.47  E-value=0.76  Score=40.28  Aligned_cols=18  Identities=22%  Similarity=0.041  Sum_probs=16.9

Q ss_pred             EEEEEecCCCcceeEEEE
Q psy8879         474 QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n  491 (694)
                      |.+|+.+|+|.|+|++..
T Consensus        66 I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881          66 LSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             ECcCCcccCEEEEEEEEc
Confidence            999999999999999965

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=86.37  E-value=0.36  Score=42.44  Aligned_cols=24  Identities=8%  Similarity=-0.307  Sum_probs=20.4

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .+.++ |.||+..|+|.|+|.+...
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~   82 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTY   82 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeC
Confidence            35666 9999999999999999763

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PHA02633 hypothetical protein; Provisional

Probab=86.30  E-value=0.59  Score=37.30  Aligned_cols=30  Identities=10%  Similarity=-0.105  Sum_probs=23.9

Q ss_pred             EEEEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         472 TVQVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       472 tL~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ..|.++..+|+|.|.|.++|.-|-.+--+.
T Consensus        20 Lwilpa~~sDSGiYiC~~rn~t~c~~~si~   49 (63)
T PHA02633         20 MLILNPTQSDSGIYMCITKNETYSDMMKFD   49 (63)
T ss_pred             EEEeccccccCcEEEEEEcCCCeeEEEEEE
Confidence            339999999999999999987776554433

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=85.66  E-value=0.44  Score=42.83  Aligned_cols=35  Identities=6%  Similarity=-0.072  Sum_probs=27.1

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      +..| |.+++.+|+|+|.|.++......++.+..+.
T Consensus        71 ~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V  106 (110)
T cd05878          71 DASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEV  106 (110)
T ss_pred             cEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEE
Confidence            3455 9999999999999999987666666555443

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=85.22  E-value=0.49  Score=42.74  Aligned_cols=24  Identities=13%  Similarity=0.025  Sum_probs=20.5

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      .+| |.+++.+|+|+|+|.+.|.--
T Consensus        80 ~sL~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          80 ASIVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eEEEEeeCCcccCEEEEEEEEeCCC
Confidence            455 999999999999999998633

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PHA02785 IL-beta-binding protein; Provisional

Probab=85.14  E-value=1.4  Score=47.60  Aligned_cols=23  Identities=9%  Similarity=-0.077  Sum_probs=21.1

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEe
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      +.| |.+|+..|.|.|+|.|+|..
T Consensus       292 ~~L~I~~V~~~D~G~Y~C~A~n~~  315 (326)
T PHA02785        292 SRLNINPVKEEDATTFTCMAFTIP  315 (326)
T ss_pred             EEEEECCcchhcCeeeEEEEEecc
Confidence            556 99999999999999999987

>KOG3513|consensus

Probab=85.13  E-value=1  Score=54.83  Aligned_cols=67  Identities=15%  Similarity=0.077  Sum_probs=43.7

Q ss_pred             ceeeeeceeE-------EEEeccCccccccceeEeeeeEEeccc-EE-EEEEEecCCCcceeEEEEEeeeccceeEEeec
Q psy8879         435 QSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLG-TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNT  505 (694)
Q Consensus       435 ~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~g-tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~  505 (694)
                      +-...|.|.+       +.|.+..++.. ..     +....+.| +| |.+|+..|+|.|+|.+.|+.+.   ..++-.+
T Consensus       256 G~~v~LECfA~G~P~P~i~W~k~~g~~~-~~-----r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~---~~~~~~v  326 (1051)
T KOG3513|consen  256 GQSVKLECFALGNPTPQIKWRKVDGKPP-PR-----RATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS---ATHSGHV  326 (1051)
T ss_pred             CCeEEEEEEecCCCCCcEEEEeCCCCCC-Cc-----ceeeeccccEEEecccCcCCCeEEEEEEeccccc---ceeeEEE
Confidence            3556778877       77777777533 22     22233333 44 9999999999999999999883   3344444


Q ss_pred             cCCCC
Q psy8879         506 NCSRP  510 (694)
Q Consensus       506 ~~~~~  510 (694)
                      +..++
T Consensus       327 ~v~a~  331 (1051)
T KOG3513|consen  327 TVYAP  331 (1051)
T ss_pred             EEecC
Confidence            44443

>PHA03376 BARF1; Provisional

Probab=85.05  E-value=3.9  Score=40.28  Aligned_cols=30  Identities=10%  Similarity=0.103  Sum_probs=22.2

Q ss_pred             EEEEEecCCCcceeEEEEEeeeccceeEEeecc
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTN  506 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~  506 (694)
                      |.+++++|.|+|+|.+.--.   ..+.+++-|.
T Consensus        91 I~~l~lSDdGtY~C~fQkge---~~~~k~ehLt  120 (221)
T PHA03376         91 VTAANISHDGNYLCRMKLGE---TEVTKQEHLS  120 (221)
T ss_pred             EEeeeecCCceEEEEEEcCC---Cceeeeeeee
Confidence            99999999999999987622   4445554443

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=83.53  E-value=0.61  Score=40.80  Aligned_cols=32  Identities=6%  Similarity=-0.089  Sum_probs=25.2

Q ss_pred             eeeeEEecc-cEE-EEEEEecCCCcceeEEEEEe
Q psy8879         462 SLRANVTGL-GTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       462 ~~~~n~~~~-gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      ..|..+.++ +.| |.+++.+|+|.|.|.+.+.-
T Consensus        51 ~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~   84 (97)
T cd05775          51 KERVNFSQNDYSLQISNLKMEDAGSYRAEINTKN   84 (97)
T ss_pred             eeeEEecCCceeEEECCCchHHCEEEEEEEEcCC
Confidence            345666553 667 99999999999999998765

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>KOG0473|consensus

Probab=83.53  E-value=0.059  Score=54.43  Aligned_cols=82  Identities=20%  Similarity=0.163  Sum_probs=40.7

Q ss_pred             CCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceec
Q psy8879         216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS  295 (694)
Q Consensus       216 ~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~  295 (694)
                      ...+.|+++.|++. ..-..|+.++.|..|+++.|.+.- + |..+.....+..+++..|..+..| .++...+++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~-~~d~~q~~e~~~~~~~~n~~~~~p-~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-L-PKDAKQQRETVNAASHKNNHSQQP-KSQKKEPHPKKNE  117 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-C-hhhHHHHHHHHHHHhhccchhhCC-ccccccCCcchhh
Confidence            34444444444443 122334444555555555555542 1 455555555555555555555443 2455556666666


Q ss_pred             ccCCcc
Q psy8879         296 CHHNQI  301 (694)
Q Consensus       296 Ls~N~L  301 (694)
                      +.+|.+
T Consensus       118 ~k~~~~  123 (326)
T KOG0473|consen  118 QKKTEF  123 (326)
T ss_pred             hccCcc
Confidence            655553

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=83.15  E-value=0.49  Score=44.18  Aligned_cols=27  Identities=7%  Similarity=-0.011  Sum_probs=22.0

Q ss_pred             EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +.+|+..|+|+|+|.+.+..+..+.-+
T Consensus         5 i~~v~~~D~G~Y~C~~~~~~~~~~~~~   31 (139)
T cd05771           5 LPGLTVHDEGTYICSVSTPPHQAQQII   31 (139)
T ss_pred             ECCCCHHHCEEEEEEEEccCcceeeEE
Confidence            778999999999999998766655444

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>KOG4221|consensus

Probab=82.32  E-value=1.8  Score=52.90  Aligned_cols=43  Identities=14%  Similarity=-0.111  Sum_probs=30.1

Q ss_pred             EEEeccCccccccceeEeeeeEEeccc-EEEEEEEecCCCcceeEEEE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLG-TVQVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~g-tL~~~v~~~d~G~YtC~~~n  491 (694)
                      +.|+.........+    .++...+-+ .+|++++..|+|.|||.|+|
T Consensus       269 v~Wlrng~~i~~ds----~rivl~g~~slliS~a~~~dSg~YtC~Atn  312 (1381)
T KOG4221|consen  269 VKWLRNGEKISVDS----YRIVLVGGSSLLISNATDDDSGKYTCRATN  312 (1381)
T ss_pred             eEEeeCCeeeeecc----eEEEEecccceEEeccccccCceEEEEecC
Confidence            77887444443222    445555444 45999999999999999999

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=81.86  E-value=0.77  Score=40.03  Aligned_cols=22  Identities=14%  Similarity=0.111  Sum_probs=18.7

Q ss_pred             cccEE-EEEEEecCCCcceeEEE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLT  490 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~  490 (694)
                      ++.+| |.+|+.+|+|.|.|.+.
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~   81 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFN   81 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEE
Confidence            34556 99999999999999984

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>KOG3864|consensus

Probab=81.46  E-value=0.29  Score=48.59  Aligned_cols=34  Identities=38%  Similarity=0.372  Sum_probs=16.5

Q ss_pred             CCccEEEecCCC-CCCCCccccCCCCCCcEEeccC
Q psy8879         192 SSLNFLDLSYNK-LMTLSQDCLAPLVTLRVLRLQG  225 (694)
Q Consensus       192 ~~L~~L~Ls~N~-l~~i~~~~f~~L~~L~~L~Ls~  225 (694)
                      ++|+.|++++|. |+.-.-..+..+++|+.|.+.+
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            455555555443 4444334444455555555543

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=81.19  E-value=5.1  Score=32.44  Aligned_cols=23  Identities=9%  Similarity=-0.188  Sum_probs=18.9

Q ss_pred             EEEEEEEecCCCcceeEEEEEee
Q psy8879         472 TVQVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       472 tL~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      ..+.+++..|.|.|+|.+.+...
T Consensus        47 ~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen   47 LFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             EEESSEEGGGTEEEEEEEEETTE
T ss_pred             eeeeeeccccCEEEEEEEEeCCC
Confidence            44678999999999999988443

...

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=80.96  E-value=2.2  Score=43.91  Aligned_cols=52  Identities=15%  Similarity=0.014  Sum_probs=41.2

Q ss_pred             eEEEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         443 SEILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       443 ~~i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      ....|..|+++.. +   -..+++++..|.| +.+...+++|.|||+++-.....+.
T Consensus        13 P~y~W~GP~g~~l-~---gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~i~~~~   65 (271)
T PF07354_consen   13 PTYLWTGPNGKPL-S---GNSYVNITETGKLMFKNFQESMSGSYTCTLSYKPIKAET   65 (271)
T ss_pred             CceEEECCCCccc-C---CCCeEEEccCceEEeeccccccCCceEEEEEEEeccccc
Confidence            3467888887766 2   2456799999999 9999999999999999887755443

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA02785 IL-beta-binding protein; Provisional

Probab=80.46  E-value=1.4  Score=47.51  Aligned_cols=33  Identities=15%  Similarity=0.003  Sum_probs=26.1

Q ss_pred             eeEEecccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         464 RANVTGLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       464 ~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ++.....|+| |.+|+.+|+|.|+|.++|.....
T Consensus       170 r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~  203 (326)
T PHA02785        170 RLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDK  203 (326)
T ss_pred             ceEecCCCeEEEeecChhhCeEEEEEEEeccCCE
Confidence            4444445777 99999999999999999975543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	694
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-16
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-16
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		4e-14
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-05
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		5e-14
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-05
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		6e-14
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		3e-13
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-05
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		3e-13
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-13
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		4e-12
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-11
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-11
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-11
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-11
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		5e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-11
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-11
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-08
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-11
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-08
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		8e-11
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		4e-08
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		1e-10
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		4e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		4e-10
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-09
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-05
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-09
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-05
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-09
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-09
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-09
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-09
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-09
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		5e-09
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		5e-09
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		5e-09
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-08
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		2e-07
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		2e-07
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		1e-08
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		4e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-08
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		2e-07
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-08
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-05
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		4e-08
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		6e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		5e-08
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		4e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		5e-08
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		5e-08
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		7e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		6e-08
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		6e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		6e-08
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		5e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		7e-08
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		5e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		7e-08
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		5e-04
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		8e-08
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		4e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		8e-08
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		4e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		9e-08
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		3e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		9e-08
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-07
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		1e-07
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-07
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-05
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-07
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		2e-07
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		1e-04
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		3e-07
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		1e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-07
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-05
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		3e-07
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		1e-04
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		7e-07
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		1e-04
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		8e-07
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		1e-04
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		9e-07
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		9e-07
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		1e-06
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		1e-06
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		1e-06
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		3e-06
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		1e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		5e-06
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		1e-05
3o53_A	317	Crystal Structure Of Lrim1 Leucine-Rich Repeat Doma		2e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-05
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-05
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		6e-05
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		7e-05
3oja_A	487	Crystal Structure Of Lrim1APL1C COMPLEX Length = 48		8e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		8e-05
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		1e-04
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		1e-04
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-04
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		4e-04
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		6e-04

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 3/224 (1%)
Query: 148 LGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
           L L  N + V+ T     L  +L+ L LS N + K+E  +F GL SLN L+L  N+L T+
Sbjct: 40  LNLQENSIQVIRTDTFKHLR-HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 208 SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL 267
                  L  LR L L+ N +      A   + S+  LDL        +  +    L +L
Sbjct: 99  PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 268 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 327
           + L++       +    L  L +L  L    N++D++   SF+ L++L  L L H ++  
Sbjct: 159 RYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 328 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           +   +   L +L  L+LSHN L +L  DL TPL  L+ + L+ N
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 3/224 (1%)
Query: 148 LGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
           L L  N + V+ T     L  +L+ L LS N + K+E  +F GL SLN L+L  N+L T+
Sbjct: 40  LNLQENSIQVIRTDTFKHLR-HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 208 SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL 267
                  L  LR L L+ N +      A   + S+  LDL        +  +    L +L
Sbjct: 99  PTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNL 158
Query: 268 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 327
           + L++       +    L  L +L  L    N++D++   SF+ L++L  L L H ++  
Sbjct: 159 RYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 328 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           +   +   L +L  L+LSHN L +L  DL TPL  L+ + L+ N
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 103/237 (43%), Gaps = 6/237 (2%)
Query: 136 GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
           GA +  + P      P   L  VPT   A    +  R+ L  N++  +   SF+   +L 
Sbjct: 3   GACVCYNEPKVTTSCPQQGLQAVPTGIPA----SSQRIFLHGNRISYVPAASFQSCRNLT 58
Query: 196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN-RLTVSVVAALQGLRSVTDLDLSHNLLAG 254
            L L  N L  +       L  L  L L  N +L V      +GL  +  L L    L  
Sbjct: 59  ILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ- 117
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
            LGP     L++L+ L +  N   ++       L  LT L  H N+I  + +H+FR L +
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHS 177
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           L  L L  N +  V   +   L  L TL L  N L  L  +++ PL+SLQ LRL+DN
Sbjct: 178 LDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 3/162 (1%)
Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273
           P  + R+  L GNR++    A+ Q  R++T L L  N LAG +  +    L+ L+ L ++
Sbjct: 30  PASSQRIF-LHGNRISYVPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLS 87
Query: 274 HN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
            N Q   V      GL  L +L      +  L    FR L+ L +L L  N + A+   +
Sbjct: 88  DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNT 147
Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
              L NLT L L  N + ++ +     L SL  L L  N ++
Sbjct: 148 FRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVA 189

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 3/250 (1%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
           G+S+  + L L  N + ++  ++   L  +L+ L LS N +  +E  +F GL++LN L+L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
             N+L T+       L  L+ L L+ N +      A   + S+  LDL        +   
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179
Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 319
               LS+L+ L++A      +    L  L KL  L    N +  +   SF+ L  L  L 
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
           +  ++I  +   +  +L +L  ++L+HN L  L  DL TPL  L+ + L  N  +   + 
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297
Query: 380 IYVGFNTMDL 389
           +++ +   D+
Sbjct: 298 LWLSWWIKDM 307

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 275 NQFSSV---RRGALAGLDKLTS----LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 327
           NQFS V   R+      D +++    L+ H NQI +++ +SF+ L  L  L L+ N I  
Sbjct: 43  NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 328 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
           +   +   L+NL TL+L  N L  +       L  L+EL L +N I   P
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 54/263 (20%)
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
           L +    ++ I  GAF GL+S L  L L +N L+V+P+ A   L+  L  L L +N +  
Sbjct: 104 LQLGRNSIRQIEVGAFNGLAS-LNTLELFDNWLTVIPSGAFEYLS-KLRELWLRNNPIES 161
Query: 183 LENTSFKGLSSLNFLDLS-YNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRS 241
           + + +F  + SL  LDL    KL  +S+     L  L+ L L              G+ +
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL--------------GMCN 207
Query: 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
           + D+            P+  P L  L+ L ++ N F  +R G+  GL  L  L   ++Q+
Sbjct: 208 IKDM------------PNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 302 DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 361
            ++E ++F  L++L  L+LAHN                         L +L  DL TPL+
Sbjct: 255 SLIERNAFDGLASLVELNLAHNN------------------------LSSLPHDLFTPLR 290
Query: 362 SLQELRLDDNDISMEPECIYVGF 384
            L EL L  N  + + + +++ +
Sbjct: 291 YLVELHLHHNPWNCDCDILWLAW 313

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 101/237 (42%), Gaps = 6/237 (2%)
Query: 136 GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
           GA +  + P      P   L  VP     P A    R+ L  N++  +   SF+   +L 
Sbjct: 3   GACVCYNEPKVTTSCPQQGLQAVPVGI--PAASQ--RIFLHGNRISHVPAASFRACRNLT 58
Query: 196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV-VAALQGLRSVTDLDLSHNLLAG 254
            L L  N L  +       L  L  L L  N    SV  A   GL  +  L L    L  
Sbjct: 59  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ- 117
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
            LGP     L++L+ L +  N   ++       L  LT L  H N+I  + + +FR L +
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 177
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           L  L L  NR+  V   +   L  L TL L  N L AL  + + PL++LQ LRL+DN
Sbjct: 178 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273
           P  + R+  L GNR++    A+ +  R++T L L  N+LA  +  +    L+ L+ L ++
Sbjct: 30  PAASQRIF-LHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLS 87
Query: 274 HN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
            N Q  SV      GL +L +L      +  L    FR L+ L +L L  N + A+   +
Sbjct: 88  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 147
Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
              L NLT L L  N + ++ +     L SL  L L  N ++
Sbjct: 148 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 189

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 101/237 (42%), Gaps = 6/237 (2%)
Query: 136 GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
           GA +  + P      P   L  VP     P A    R+ L  N++  +   SF+   +L 
Sbjct: 4   GACVCYNEPKVTTSCPQQGLQAVPVGI--PAASQ--RIFLHGNRISHVPAASFRACRNLT 59
Query: 196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV-VAALQGLRSVTDLDLSHNLLAG 254
            L L  N L  +       L  L  L L  N    SV  A   GL  +  L L    L  
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ- 118
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
            LGP     L++L+ L +  N   ++       L  LT L  H N+I  + + +FR L +
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           L  L L  NR+  V   +   L  L TL L  N L AL  + + PL++LQ LRL+DN
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273
           P  + R+  L GNR++    A+ +  R++T L L  N+LA  +  +    L+ L+ L ++
Sbjct: 31  PAASQRIF-LHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLS 88
Query: 274 HN-QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
            N Q  SV      GL +L +L      +  L    FR L+ L +L L  N + A+   +
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
              L NLT L L  N + ++ +     L SL  L L  N ++
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 3/173 (1%)
Query: 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA 284
            N   +  V  +Q L +V  L L  N L      S +  L++L  L +  NQ  S+  G 
Sbjct: 48  ANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGV 104
Query: 285 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
              L  L  L    NQ+  L D  F  L+ L++L+LAHN++ ++       L+NLT LDL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 345 SHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
           S+N L++L + +   L  L++LRL  N +   P+ ++    ++    ++   W
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 9/289 (3%)
Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
           LD T ++++ LP   +   TL  LV+S+ + +N+   +     S L  L +  N   +  
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKRLEL 341
Query: 160 TSALAPLAPNLDRLDLSHNQLYKLE--NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVT 217
            +       NL  LDLSH+ +   +  N   + LS L  L+LSYN+ ++L  +       
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 218 LRVLRLQGNRLTVS-VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQ 276
           L +L L   RL V    +  Q L  +  L+LSH+LL           L +L+ L++  N 
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNH 460
Query: 277 FSS---VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333
           F      +  +L  L +L  L      +  ++ H+F +L  ++H+DL+HNR+ + S  +L
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520
Query: 334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV 382
           +HL  +  L+L+ N +  +   L+  L   + + L  N +      IY 
Sbjct: 521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF 568

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
           L P+   LDL +N++ ++++  FK L +L+ L L  NK+  +S    APLV L  L L  
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 226 NRLT---VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN--QFSSV 280
           N+L      +   LQ LR V + +++       +  S    L+ + V+ +  N  + S +
Sbjct: 110 NQLKELPEKMPKTLQELR-VHENEITK------VRKSVFNGLNQMIVVELGTNPLKSSGI 162
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340
             GA  G+ KL+ +      I  +      +L+ L HLD   N+I  V  ASL  L+NL 
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL-HLD--GNKITKVDAASLKGLNNLA 219
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
            L LS N + A+    +     L+EL L++N +   P
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
           L P+   LDL +N++ ++++  FK L +L+ L L  NK+  +S    APLV L  L L  
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 226 NRLT---VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN--QFSSV 280
           N+L      +   LQ LR V + +++       +  S    L+ + V+ +  N  + S +
Sbjct: 110 NQLKELPEKMPKTLQELR-VHENEITK------VRKSVFNGLNQMIVVELGTNPLKSSGI 162
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340
             GA  G+ KL+ +      I  +      +L+ L HLD   N+I  V  ASL  L+NL 
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL-HLD--GNKITKVDAASLKGLNNLA 219
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
            L LS N + A+    +     L+EL L++N +   P
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA 284
            N   +  V  +Q L +V  L L  N L      S +  L++L  L +  NQ  S+  G 
Sbjct: 48  ANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGV 104
Query: 285 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
              L  L  L    NQ+  L D  F  L+ L++L L HN++ ++       L+NLT LDL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 345 SHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIY 381
            +N L++L + +   L  L++L L+DN +   P+ ++
Sbjct: 165 DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 125/275 (45%), Gaps = 3/275 (1%)
Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA 167
            V PG F     L  L + S  LK I  G F GLS+ L  L +  N + ++       L 
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLY 128
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
            NL  L++  N L  + + +F GL+SL  L L    L ++  + L+ L  L VLRL+   
Sbjct: 129 -NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187
Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
           +      + + L  +  L++SH      + P+ +  L +L  LSI H   ++V   A+  
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRH 246
Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           L  L  L+  +N I  +E      L  L  + L   ++  V   +   L+ L  L++S N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 348 FLRALTQDLITPLKSLQELRLDDNDISMEPECIYV 382
            L  L + +   + +L+ L LD N ++ +   ++V
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV 341

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
           P  +P  +  ++L +  N+  ++ +   A    L  L  + N +  +E  +F  L  L  
Sbjct: 27  PEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84
Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
           L L  NR+  +       LSNLT LD+S N +  L   +   L +L+ L + DND+    
Sbjct: 85  LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144
Query: 378 ECIYVGFNTMD 388
              + G N+++
Sbjct: 145 HRAFSGLNSLE 155

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 3/176 (1%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL-AGP 255
           LDL  NKL +L       L  LR+L L  N+L        + L+++  L ++ N L A P
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           +G     +L +L  L +  NQ  S+       L KLT LS  +N++  L    F  L++L
Sbjct: 102 IG--VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
             L L +N++  V   +   L+ L TL L +N L+ + +     L+ L+ L+L +N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
           L  VP+     +  + ++LDL    L  L + +F+GL+ L +L+L YN+L TLS      
Sbjct: 26  LDSVPSG----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
           L  L  L L  N+L    +     L  +  L L  N L   L      RL+ LK L +  
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
           NQ  S+  GA   L  L +LS   NQ+  +   +F  L  L  + L  N+ 
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 12/177 (6%)
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
           L LQ   L     A  +GL  +T L+L +N L   L       L+ L  L +A+NQ +S+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340
             G    L +L  L    NQ+  L    F  L+ L  L L  N++ ++   +   L+NL 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
           TL LS N L+++       L  LQ + L  N            F+    E++Y   W
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ-----------FDCSRCEILYLSQW 204

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
           L  VP+     +  + ++LDL    L  L + +F+GL+ L +L+L YN+L TLS      
Sbjct: 26  LDSVPSG----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
           L  L  L L  N+L    +     L  +  L L  N L   L      RL+ LK L +  
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
           NQ  S+  GA   L  L +LS   NQ+  +   +F  L  L  + L  N+ 
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
           L LQ   L     A  +GL  +T L+L +N L   L       L+ L  L +A+NQ +S+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98
Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340
             G    L +L  L    NQ+  L    F  L+ L  L L  N++ ++   +   L+NL 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
           TL LS N L+++       L  LQ + L  N  
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 144/334 (43%), Gaps = 40/334 (11%)
Query: 79  SDLYAISES-LRGLEPDERVSLLDCTLSNV-TVLPGKFLEGVTLHGLVISSGELKNISDG 136
           + L A SES   GL+    ++ LD + +N+  V  G F    +L  L +    ++ +S  
Sbjct: 232 NQLLATSESTFSGLKW-TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 137 AFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD-----------RLDLSHNQLYKLEN 185
           +F GLS+ L+ L L     +    S      PN+D            L++  N +   ++
Sbjct: 291 SFYGLSN-LRYLSLKR---AFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKS 346
Query: 186 TSFKGLSSLNFLDLS--YNKLMTLSQDCL-----APLVTLRVLRLQGNRLTVSVVAALQG 238
            +F GL SL +L LS  +  L TL+ +       +PL+TL + +   +++     + L  
Sbjct: 347 NTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQ 406
Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
           LR    LDL  N +   L       L ++  + +++N++  +   + A +  L  L    
Sbjct: 407 LRI---LDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR 463
Query: 299 ---NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ- 354
                +D+     FR L  L+ LDL++N I  ++   L  L NL  LD  HN L  L + 
Sbjct: 464 VALKNVDI-SPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKR 522
Query: 355 -------DLITPLKSLQELRLDDNDISMEPECIY 381
                  + +  L  L  L L+ N +   P  ++
Sbjct: 523 ANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVF 556

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 108/239 (45%), Gaps = 9/239 (3%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
           L  N+  L+L+HNQL +L  T+F   S L  LD  +N +  L  +    L  L+VL LQ 
Sbjct: 23  LPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQH 82
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
           N L+           ++T+LDL  N +   +  +      +L  L ++HN  SS + G  
Sbjct: 83  NELSQISDQTFVFCTNLTELDLMSNSIHK-IKSNPFKNQKNLIKLDLSHNGLSSTKLGTG 141
Query: 286 AGLDKLTSLSCHHNQIDVL--EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
             L+ L  L    N+I  L  E+  F   S+L  LDL+ N +   S      +  L  L 
Sbjct: 142 VQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL 201
Query: 344 LSHNFLRA-LTQDLITPLK--SLQELRLDDNDISMEPECIYVGF---NTMDLELIYSGV 396
           L++  L   LT+ L   L   S+Q L L +N +    E  + G    N   L+L Y+ +
Sbjct: 202 LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 99/245 (40%), Gaps = 54/245 (22%)
Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
           L  VP      ++P+   LDL +N + +L    FKGL  L  L L  NK+  + +   +P
Sbjct: 45  LKAVPKE----ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100
Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
           L  L+ L +  N L V +                         P  +P  SSL  L I  
Sbjct: 101 LRKLQKLYISKNHL-VEI-------------------------PPNLP--SSLVELRIHD 132
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFRAL-------------------- 312
           N+   V +G  +GL  +  +    N ++    E  +F  L                    
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP 192
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
            TL+ L L HN+I A+    L   S L  L L HN +R +    ++ L +L+EL LD+N 
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 373 ISMEP 377
           +S  P
Sbjct: 253 LSRVP 257

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
           T L   +N I  L    F+ L  L  L L +N+I  +   + + L  L  L +S N L  
Sbjct: 57  TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 352 LTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
           +  +L +   SL ELR+ DN I   P+ ++ G   M+
Sbjct: 117 IPPNLPS---SLVELRIHDNRIRKVPKGVFSGLRNMN 150

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 139/351 (39%), Gaps = 73/351 (20%)
Query: 111 PGKFLEGVTLHGL------VISSGELKNISDGAFIGLSSPLQALGLPN-NLLSVVPTSAL 163
           PG  +   T  GL       +   +   +  GAF GL++ L+ L L   NL   V +   
Sbjct: 66  PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNF 124
Query: 164 APLAPNLDRLDLSHNQLYKLENTSFK-GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLR 222
                +L+ L L  N + K++  SF   +   + LDL++NK+ ++ ++ L        L 
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL--------LN 176
Query: 223 LQGNRLTVSVVAA--LQGLR----------------SVTDLDLSHNLLAGPLGPSTVPRL 264
            QG   T+  +++  LQ +                 S+T LDLS N     +       +
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236
Query: 265 SSLKVLSI------------AHNQFSSVRRGALAGLD----------------------- 289
           +  K+ S+             H  F         GL+                       
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296
Query: 290 ---KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
               L  L+   N+I+ ++D++F  L+ L  L+L+ N + ++      +L  L  LDLS+
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356
Query: 347 NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
           N +RAL       L +L+EL LD N +   P+ I+    ++    +++  W
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 30/194 (15%)
Query: 126 SSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN 185
           SSG L +I  G    L+  +++L L NN ++ +  S L     NL  L L+ N +  +E 
Sbjct: 13  SSGSLNSIPSG----LTEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEE 67
Query: 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245
            SF  L SL  LDLSYN L  LS     PL +L  L L GN        +L         
Sbjct: 68  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--------- 118
Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
             SH              L+ L++L + + + F+ ++R   AGL  L  L    + +   
Sbjct: 119 -FSH--------------LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 163
Query: 305 EDHSFRALSTLSHL 318
           E  S +++  +SHL
Sbjct: 164 EPKSLKSIQNVSHL 177

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
           ++K L +++N+ + +    L     L +L    N I+ +E+ SF +L +L HLDL++N +
Sbjct: 27  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 326 VAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDND 372
             +S +    LS+LT L+L  N  + L +  L + L  LQ LR+ + D
Sbjct: 87  SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 134

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 32/195 (16%)
Query: 126 SSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN 185
           SSG L +I  G    L+  +++L L NN ++ +  S L     NL  L L+ N +  +E 
Sbjct: 39  SSGSLNSIPSG----LTEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEE 93
Query: 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245
            SF  L SL  LDLSYN L  LS     PL +L  L L GN                   
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT--------------- 138
Query: 246 DLSHNLLAGPLGPSTV-PRLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
                     LG +++   L+ L++L + + + F+ ++R   AGL  L  L    + +  
Sbjct: 139 ----------LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188
Query: 304 LEDHSFRALSTLSHL 318
            E  S +++  +SHL
Sbjct: 189 YEPKSLKSIQNVSHL 203

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
           ++K L +++N+ + +    L     L +L    N I+ +E+ SF +L +L HLDL++N +
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 326 VAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDND 372
             +S +    LS+LT L+L  N  + L +  L + L  LQ LR+ + D
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 108/280 (38%), Gaps = 77/280 (27%)
Query: 170 LDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL------------- 215
           L RLDLS NQ+  L  + SF  L+SL  +D S N++  + +  L PL             
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 216 -------------------VTLRVLRLQGNRLTVSV----------------------VA 234
                              + L +L + GN  TV +                      + 
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 235 ALQGLRSVTD----------------LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
           A  G  ++ D                LDLSH  +   L       L  LKVL++A+N+ +
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKIN 303
Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
            +   A  GLD L  L+  +N +  L   +F  L  ++++DL  N I  +   +   L  
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
           L TLDL  N   ALT     P  S+ ++ L  N +   P+
Sbjct: 364 LQTLDLRDN---ALTTIHFIP--SIPDIFLSGNKLVTLPK 398

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 133/274 (48%), Gaps = 48/274 (17%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L+ L +SS  + +IS  A  GL+S LQ L   N +  + P + L  L    +RLD+S N+
Sbjct: 135 LNRLELSSNTISDIS--ALSGLTS-LQQLSFGNQVTDLKPLANLTTL----ERLDISSNK 187
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
           +  +  +    L++L  L  + N++  ++   L  L  L  L L GN+L    +  L  L
Sbjct: 188 VSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLASL 241
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
            ++TDLDL++N ++  L P  +  L+ L  L +  NQ S++    LAGL  LT+L  + N
Sbjct: 242 TNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNEN 296
Query: 300 QIDVLEDHS-----------------------FRALSTLSHLDLAHNRIVAVSGASLAHL 336
           Q   LED S                         +L+ L  L  A+N++  VS  SLA+L
Sbjct: 297 Q---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS--SLANL 351
Query: 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
           +N+  L   HN +  LT   +  L  + +L L+D
Sbjct: 352 TNINWLSAGHNQISDLTP--LANLTRITQLGLND 383

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 132/272 (48%), Gaps = 44/272 (16%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L+ L +SS  + +IS  A  GL+S LQ L   N +  + P + L  L    +RLD+S N+
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTS-LQQLNFGNQVTDLKPLANLTTL----ERLDISSNK 183
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
           +  +  +    L++L  L  + N++  ++   L  L  L  L L GN+L    +  L  L
Sbjct: 184 VSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLASL 237
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
            ++TDLDL++N ++  L P  +  L+ L  L +  NQ S++    LAGL  LT+L  + N
Sbjct: 238 TNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNEN 292
Query: 300 QIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHLSN 338
           Q   LED S    L  L++L L  N I  +S                     +SLA+L+N
Sbjct: 293 Q---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 349
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
           +  L   HN +  LT   +  L  + +L L+D
Sbjct: 350 INWLSAGHNQISDLTP--LANLTRITQLGLND 379

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 124/255 (48%), Gaps = 42/255 (16%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L+ L +SS  + +IS  A  GL+S LQ L   N +  + P + L  L    +RLD+S N+
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTS-LQQLNFGNQVTDLKPLANLTTL----ERLDISSNK 183
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
           +  +  +    L++L  L  + N++  ++   L  L  L  L L GN+L    +  L  L
Sbjct: 184 VSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLASL 237
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
            ++TDLDL++N ++  L P  +  L+ L  L +  NQ S++    LAGL  LT+L  + N
Sbjct: 238 TNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNEN 292
Query: 300 QIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHLSN 338
           Q   LED S    L  L++L L  N I  +S                     +SLA+L+N
Sbjct: 293 Q---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTN 349
Query: 339 LTTLDLSHNFLRALT 353
           +  L   HN +  LT
Sbjct: 350 INWLSAGHNQISDLT 364

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 132/272 (48%), Gaps = 44/272 (16%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L+ L +SS  + +IS  A  GL+S LQ L   N +  + P + L  L    +RLD+S N+
Sbjct: 136 LNRLELSSNTISDIS--ALSGLTS-LQQLSFGNQVTDLKPLANLTTL----ERLDISSNK 188
Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
           +  +  +    L++L  L  + N++  ++   L  L  L  L L GN+L    +  L  L
Sbjct: 189 VSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLASL 242
Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
            ++TDLDL++N ++  L P  +  L+ L  L +  NQ S++    LAGL  LT+L  + N
Sbjct: 243 TNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNEN 297
Query: 300 QIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHLSN 338
           Q   LED S    L  L++L L  N I  +S                     +SLA+L+N
Sbjct: 298 Q---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 354
Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
           +  L   HN +  LT   +  L  + +L L+D
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLND 384

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 45/257 (17%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA--PNLDRLDLSH 177
           L+ L +SS  + +IS  A  GL+S LQ L   +N ++      L PLA    L+RLD+S 
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTS-LQQLNFSSNQVT-----DLKPLANLTTLERLDISS 182
Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
           N++  +  +    L++L  L  + N++  ++   L  L  L  L L GN+L    +  L 
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLA 236
Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
            L ++TDLDL++N ++  L P  +  L+ L  L +  NQ S++    LAGL  LT+L  +
Sbjct: 237 SLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELN 291
Query: 298 HNQIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHL 336
            NQ   LED S    L  L++L L  N I  +S                     +SLA+L
Sbjct: 292 ENQ---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 348
Query: 337 SNLTTLDLSHNFLRALT 353
           +N+  L   HN +  LT
Sbjct: 349 TNINWLSAGHNQISDLT 365

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 45/257 (17%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA--PNLDRLDLSH 177
           L+ L +SS  + +IS  A  GL+S LQ L   +N ++      L PLA    L+RLD+S 
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTS-LQQLSFSSNQVT-----DLKPLANLTTLERLDISS 182
Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
           N++  +  +    L++L  L  + N++  ++   L  L  L  L L GN+L    +  L 
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLA 236
Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
            L ++TDLDL++N ++  L P  +  L+ L  L +  NQ S++    LAGL  LT+L  +
Sbjct: 237 SLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELN 291
Query: 298 HNQIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHL 336
            NQ   LED S    L  L++L L  N I  +S                     +SLA+L
Sbjct: 292 ENQ---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 348
Query: 337 SNLTTLDLSHNFLRALT 353
           +N+  L   HN +  LT
Sbjct: 349 TNINWLSAGHNQISDLT 365

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 45/257 (17%)
Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA--PNLDRLDLSH 177
           L+ L +SS  + +IS  A  GL+S LQ L   +N ++      L PLA    L+RLD+S 
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTS-LQQLSFSSNQVT-----DLKPLANLTTLERLDISS 182
Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
           N++  +  +    L++L  L  + N++  ++   L  L  L  L L GN+L    +  L 
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQL--KDIGTLA 236
Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
            L ++TDLDL++N ++  L P  +  L+ L  L +  NQ S++    LAGL  LT+L  +
Sbjct: 237 SLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELN 291
Query: 298 HNQIDVLEDHS-FRALSTLSHLDLAHNRIVAVSG--------------------ASLAHL 336
            NQ   LED S    L  L++L L  N I  +S                     +SLA+L
Sbjct: 292 ENQ---LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANL 348
Query: 337 SNLTTLDLSHNFLRALT 353
           +N+  L   HN +  LT
Sbjct: 349 TNINWLSAGHNQISDLT 365

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 44/292 (15%)
Query: 119 TLHGLVISSGELKNISDGAF------IGL--------------------SSPLQALGLPN 152
           +L  L +SS ++K  S G F       GL                    ++ ++ L L N
Sbjct: 177 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 236
Query: 153 NLLSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           + LS    +    L   NL  LDLS+N L  + N SF  L  L +  L YN +  L    
Sbjct: 237 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 296
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAA---------LQGLRSVTDLDLSHNLLAGPLGPSTVP 262
           L  L  +R L L+ +    S+  A          Q L+ +  L++  N + G +  +   
Sbjct: 297 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFT 355
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-----HNQIDVLEDHSFRALSTLSH 317
            L +LK LS++ N F+S+R         L     H      N+I  +E  +F  L  L  
Sbjct: 356 GLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 414
Query: 318 LDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
           LDL  N I   ++G     L N+  + LS+N    LT++    + SLQ L L
Sbjct: 415 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 466

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 6/232 (2%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
           L  N+  L+L+HNQL +L   +F   S L  LD+ +N +  L  +    L  L+VL LQ 
Sbjct: 28  LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 87
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
           N L+           ++T+L L  N +   +  +   +  +L  L ++HN  SS + G  
Sbjct: 88  NELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 146
Query: 286 AGLDKLTSLSCHHNQIDVL--EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
             L+ L  L   +N+I  L  E+    A S+L  L+L+ N+I   S      +  L  L 
Sbjct: 147 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 206
Query: 344 LSHNFLR-ALTQDLITPLK--SLQELRLDDNDISMEPECIYVGFNTMDLELI 392
           L++  L  +LT+ L   L   S++ L L ++ +S      ++G    +L ++
Sbjct: 207 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 258

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 44/292 (15%)
Query: 119 TLHGLVISSGELKNISDGAF------IGL--------------------SSPLQALGLPN 152
           +L  L +SS ++K  S G F       GL                    ++ ++ L L N
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231
Query: 153 NLLSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           + LS    +    L   NL  LDLS+N L  + N SF  L  L +  L YN +  L    
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAA---------LQGLRSVTDLDLSHNLLAGPLGPSTVP 262
           L  L  +R L L+ +    S+  A          Q L+ +  L++  N + G +  +   
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFT 350
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-----HNQIDVLEDHSFRALSTLSH 317
            L +LK LS++ N F+S+R         L     H      N+I  +E  +F  L  L  
Sbjct: 351 GLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409
Query: 318 LDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
           LDL  N I   ++G     L N+  + LS+N    LT++    + SLQ L L
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 6/232 (2%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
           L  N+  L+L+HNQL +L   +F   S L  LD+ +N +  L  +    L  L+VL LQ 
Sbjct: 23  LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
           N L+           ++T+L L  N +   +  +   +  +L  L ++HN  SS + G  
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 286 AGLDKLTSLSCHHNQIDVL--EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
             L+ L  L   +N+I  L  E+    A S+L  L+L+ N+I   S      +  L  L 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201
Query: 344 LSHNFLR-ALTQDLITPLK--SLQELRLDDNDISMEPECIYVGFNTMDLELI 392
           L++  L  +LT+ L   L   S++ L L ++ +S      ++G    +L ++
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           L  L L  N LS +P        P L  L +S+N L ++E+ +F+  +SL  L LS N+L
Sbjct: 119 LTVLVLERNDLSSLPRGIFHN-TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
             +    +  L    V        + ++++ L    +V +LD SHN +    GP  V   
Sbjct: 178 THVDLSLIPSLFHANV--------SYNLLSTLAIPIAVEELDASHNSINVVRGPVNV--- 226
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
             L +L + HN  +      L     L  +   +N+++ +  H F  +  L  L +++NR
Sbjct: 227 -ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
           +VA++      +  L  LDLSHN L  + ++       L+ L LD N I
Sbjct: 284 LVALNLYGQP-IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSI 330

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L P     +  L VL +  N  SS+ RG      KLT+LS  +N ++ +ED +F+A ++L
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
            +L L+ NR+  V    L+ + +L   ++S+N L  L
Sbjct: 168 QNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 121/292 (41%), Gaps = 44/292 (15%)
Query: 119 TLHGLVISSGELKNISDGAF------IGL--------------------SSPLQALGLPN 152
           +L  L +SS ++K  S G F       GL                    ++ ++ L L N
Sbjct: 182 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 241
Query: 153 NLLSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           + LS    +    L   NL  LDLS+N L  + N SF  L  L +  L YN +  L    
Sbjct: 242 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 301
Query: 212 LAPLVTLRVLRLQGNRLTVSVVAA---------LQGLRSVTDLDLSHNLLAGPLGPSTVP 262
           L  L  +R L L+ +    S+  A          Q L+ +  L++  N + G +  +   
Sbjct: 302 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFT 360
Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-----HNQIDVLEDHSFRALSTLSH 317
            L +LK LS++ N F+S+R         L     H      N+I  +E  +F  L  L  
Sbjct: 361 GLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 419
Query: 318 LDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
           LDL  N I   ++G     L N+  + LS+N    LT++    + SLQ L L
Sbjct: 420 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 471

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 6/232 (2%)
Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
           L  N+  L+L+HNQL +L   +F   S L  LD+ +N +  L  +    L  L+VL LQ 
Sbjct: 33  LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
           N L+           ++T+L L  N +   +  +   +  +L  L ++HN  SS + G  
Sbjct: 93  NELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 151
Query: 286 AGLDKLTSLSCHHNQIDVL--EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
             L+ L  L   +N+I  L  E+    A S+L  L+L+ N+I   S      +  L  L 
Sbjct: 152 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 211
Query: 344 LSHNFLR-ALTQDLITPLK--SLQELRLDDNDISMEPECIYVGFNTMDLELI 392
           L++  L  +LT+ L   L   S++ L L ++ +S      ++G    +L ++
Sbjct: 212 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 263

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKG--------LSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
           P+L+ LDLS N L      SFKG         +SL +LDLS+N ++T+S + L  L  L 
Sbjct: 347 PSLEFLDLSRNGL------SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLE 399
Query: 220 VLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF- 277
            L  Q + L  +S  +    LR++  LD+SH              LSSL+VL +A N F 
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQ 458
Query: 278 SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 337
            +        L  LT L     Q++ L   +F +LS+L  L++A N++ +V       L+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518
Query: 338 NLTTLDLSHN 347
           +L  + L  N
Sbjct: 519 SLQKIWLHTN 528

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           S  +LDLS N L   LG  +      L+VL ++  +  ++  GA   L  L++L    N 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
           I  L   +F  LS+L  L      + ++    + HL  L  L+++HN +++    +  + 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 360 LKSLQELRLDDNDI 373
           L +L+ L L  N I
Sbjct: 148 LTNLEHLDLSSNKI 161

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           L  L L  N LS +P        P L  L +S+N L ++E+ +F+  +SL  L LS N+L
Sbjct: 125 LTVLVLERNDLSSLPRGIFHN-TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
             +    +  L    V        + ++++ L    +V +LD SHN +    GP  V   
Sbjct: 184 THVDLSLIPSLFHANV--------SYNLLSTLAIPIAVEELDASHNSINVVRGPVNV--- 232
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
             L +L + HN  +      L     L  +   +N+++ +  H F  +  L  L +++NR
Sbjct: 233 -ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
           +VA++      +  L  LDLSHN L  + ++       L+ L LD N I
Sbjct: 290 LVALNLYGQP-IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSI 336

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L P     +  L VL +  N  SS+ RG      KLT+LS  +N ++ +ED +F+A ++L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
            +L L+ NR+  V    L+ + +L   ++S+N L  L
Sbjct: 174 QNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 207

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
           L LS N L T S   L P    R+ +L  +R  ++ +     L  +  LDLSHN L   P
Sbjct: 36  LHLSENLLYTFSLATLMPYT--RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L   T+P   +L VL ++ N+ +S+  GAL GL +L  L    N++  L          L
Sbjct: 94  LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
             L LA+N++  +    L  L NL TL L  N L  + +   
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L +L   HNQ+  L     + L  L+ LD++ NR+ ++   +L  L  L  L L  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
            L   L+TP   L++L L +N ++  P  +  G   +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
           L LS N L T S   L P    R+ +L  +R  ++ +     L  +  LDLSHN L   P
Sbjct: 36  LHLSENLLYTFSLATLMPYT--RLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L   T+P   +L VL ++ N+ +S+  GAL GL +L  L    N++  L          L
Sbjct: 94  LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
             L LA+N++  +    L  L NL TL L  N L  + +   
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L +L   HNQ+  L     + L  L+ LD++ NR+ ++   +L  L  L  L L  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
            L   L+TP   L++L L +N ++  P  +  G   +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
           L LS N L T S   L P   L  L L  +R  ++ +     L  +  LDLSHN L   P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L   T+P   +L VL ++ N+ +S+  GAL GL +L  L    N++  L          L
Sbjct: 94  LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
             L LA+N++  +    L  L NL TL L  N L  + +   
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L +L   HNQ+  L     + L  L+ LD++ NR+ ++   +L  L  L  L L  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
            L   L+TP   L++L L +N ++  P  +  G   +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
           L LS N L T S   L P   L  L L  +R  ++ +     L  +  LDLSHN L   P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L   T+P   +L VL ++ N+ +S+  GAL GL +L  L    N++  L          L
Sbjct: 94  LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
             L LA+N++  +    L  L NL TL L  N L  + +   
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L +L   HNQ+  L     + L  L+ LD++ NR+ ++   +L  L  L  L L  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
            L   L+TP   L++L L +N ++  P  +  G   +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
           L LS N L T S   L P   L  L L    LT   V     L  +  LDLSHN L   P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT--LPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L   T+P   +L VL ++ N+ +S+  GAL GL +L  L    N++  L          L
Sbjct: 94  LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
             L LA+N +  +    L  L NL TL L  N L  + +   
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L +L   HNQ+  L     + L  L+ LD++ NR+ ++   +L  L  L  L L  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
            L   L+TP   L++L L +N+++  P  +  G   +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
           L LS N L T S   L P   L  L L    LT   V     L  +  LDLSHN L   P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT--LPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L   T+P   +L VL ++ N+ +S+  GAL GL +L  L    N++  L          L
Sbjct: 94  LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
             L LA+N +  +    L  L NL TL L  N L  + +   
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L +L   HNQ+  L     + L  L+ LD++ NR+ ++   +L  L  L  L L  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
            L   L+TP   L++L L +N+++  P  +  G   +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 71/162 (43%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
           L LS N L T S   L P   L  L L    LT   V     L  +  LDLSHN L   P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT--LPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L   T+P   +L VL ++ N+ +S+  GAL GL +L  L    N++  L          L
Sbjct: 94  LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
             L LA+N +  +    L  L NL TL L  N L  + +   
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L +L   HNQ+  L     + L  L+ LD++ NR+ ++   +L  L  L  L L  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
            L   L+TP   L++L L +N+++  P  +  G   +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 148 LGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
           L L NN  +V+  + +    P L +++ S+N++  +E  +F+G S +N + L+ N+L  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 208 SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL 267
                  L +L+ L L+ NR+T     +  GL SV  L L  N +   + P     L SL
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSL 155
Query: 268 KVLSIAHNQFS 278
             L++  N F+
Sbjct: 156 STLNLLANPFN 166

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 221 LRLQGNRLTV-SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
           LRL  N  TV       + L  +  ++ S+N +   +        S +  + +  N+  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLEN 95
Query: 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 339
           V+     GL+ L +L    N+I  + + SF  LS++  L L  N+I  V+  +   L +L
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 340 TTLDLSHN 347
           +TL+L  N
Sbjct: 156 STLNLLAN 163

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
           L LS N L T S   L P   L  L L  +R  ++ +     L  +  LDLSHN L   P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L   T+P   +L VL ++ N+ +S+  GAL GL +L  L    N++  L          L
Sbjct: 94  LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
             L LA+N +  +    L  L NL TL L  N L  + +   
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L +L   HNQ+  L     + L  L+ LD++ NR+ ++   +L  L  L  L L  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
            L   L+TP   L++L L +N+++  P  +  G   +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
           L LS N L T S   L P   L  L L  +R  ++ +     L  +  LDLSHN L   P
Sbjct: 37  LHLSENLLYTFSLATLMPYTRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 94
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L   T+P   +L VL ++ N+ +S+  GAL GL +L  L    N++  L          L
Sbjct: 95  LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
             L LA+N +  +    L  L NL TL L  N L  + +   
Sbjct: 152 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L +L   HNQ+  L     + L  L+ LD++ NR+ ++   +L  L  L  L L  N L+
Sbjct: 80  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
            L   L+TP   L++L L +N+++  P  +  G   +D
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 176

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 25/290 (8%)
Query: 96  RVSLLDCTLSNVTVLPGKFLEGV-TLHGLVISSG---ELKNISDGAFIGLSSPLQALGLP 151
           RV  LD T +++  LP   +EG+ +L  LV+++    +L  I+  +F      L+ L + 
Sbjct: 278 RVQELDLTAAHLNGLPSG-IEGMNSLKKLVLNANSFDQLCQINAASF----PSLRDLYIK 332
Query: 152 NNLLSV-VPTSALAPLAPNLDRLDLSHNQLYKLE--NTSFKGLSSLNFLDLSYNKLMTLS 208
            N+  + + T  L  L  NL +LDLSH+ +   +  N   K L  L +L+LSYN+ + L 
Sbjct: 333 GNMRKLDLGTRCLEKLE-NLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLE 391
Query: 209 QDCLAPLVTLRVLRLQGNRLTVSVV-AALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL 267
                    L +L +    L V    +  Q L  +  L+LSH LL        +  L  L
Sbjct: 392 DQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS-NQHLLAGLQDL 450
Query: 268 KVLSIAHNQF--SSVRRGAL----AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
           + L++  N F   S+ +  L      L+ L   SC+   ID     +F  L  ++HLDL+
Sbjct: 451 RHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSID---QQAFHGLRNVNHLDLS 507
Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           HN +   S  +L+HL  L  L+++ N +R +   L+  L     + L  N
Sbjct: 508 HNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-P 255
           L LS N L T S   L P   L  L L  +R  ++ +     L  +  LDLSHN L   P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNL--DRCELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
           L   T+P   +L VL ++ N+ +S+  GAL GL +L  L    N++  L          L
Sbjct: 94  LLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
             L LA+N +  +    L  L NL TL L  N L  + +   
Sbjct: 151 EKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L +L   HNQ+  L     + L  L+ LD++ NR+ ++   +L  L  L  L L  N L+
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMD 388
            L   L+TP   L++L L +ND++  P  +  G   +D
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLD 175

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 9/230 (3%)
Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAP-NLDRLDLSHNQLY 181
           L + S +L+++  G F  L+  L  L L +N LS     + +     +L  LDLS N + 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 182 KLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR---VLRLQGNRLTVSVVAALQG 238
            + +++F GL  L  LD  ++ L  +S+   +  ++LR    L +      V+      G
Sbjct: 92  TM-SSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
           L S+  L ++ N       P     L +L  L ++  Q   +   A   L  L  L+  H
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL-SNLTTLDLSHN 347
           N    L+   ++ L++L  LD + N I+      L H  S+L  L+L+ N
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 41/214 (19%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKG--------LSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
           P+L+ LDLS N L      SFKG         +SL +LDLS+N ++T+S + L  L  L 
Sbjct: 347 PSLEFLDLSRNGL------SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLE 399
Query: 220 VLRLQGNRLT-VSVVAALQGLRSVTDLDLSH------------------------NLLAG 254
            L  Q + L  +S  +    LR++  LD+SH                        N    
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
              P     L +L  L ++  Q   +   A   L  L  L+  HN    L+   ++ L++
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519
Query: 315 LSHLDLAHNRIVAVSGASLAHL-SNLTTLDLSHN 347
           L  LD + N I+      L H  S+L  L+L+ N
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           S  +LDLS N L   LG  +      L+VL ++  +  ++  GA   L  L++L    N 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
           I  L   +F  LS+L  L      + ++    + HL  L  L+++HN +++    +  + 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 360 LKSLQELRLDDNDI 373
           L +L+ L L  N I
Sbjct: 148 LTNLEHLDLSSNKI 161

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
           GL++ +++L L  N ++ +    L   A NL  L L  +++  +E  +F  L SL  LDL
Sbjct: 49  GLTAAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDL 107
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
           S N L +LS     PL +L+ L L GN      V +L                       
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL----------------------- 144
Query: 260 TVPRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
             P L++L+ L I + + FS +RR   AGL  L  L      +   +  S +++  + HL
Sbjct: 145 -FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 203
Query: 319 DL 320
            L
Sbjct: 204 TL 205

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
           +++K L ++ N+ + +  G L     L  L    ++I+ +E  +F +L +L HLDL+ N 
Sbjct: 52  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 111
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP-LKSLQELRLDDNDISMEPECI-YV 382
           + ++S +    LS+L  L+L  N  + L    + P L +LQ LR+ + +   E   I + 
Sbjct: 112 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 171
Query: 383 GFNTMD 388
           G  +++
Sbjct: 172 GLTSLN 177

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
           GL++ +++L L  N ++ +    L   A NL  L L  +++  +E  +F  L SL  LDL
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
           S N L +LS     PL +L+ L L GN      V +L                       
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL----------------------- 118
Query: 260 TVPRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
             P L++L+ L I + + FS +RR   AGL  L  L      +   +  S +++  + HL
Sbjct: 119 -FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
Query: 319 DL 320
            L
Sbjct: 178 TL 179

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
           +++K L ++ N+ + +  G L     L  L    ++I+ +E  +F +L +L HLDL+ N 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP-LKSLQELRLDDNDISMEPECI-YV 382
           + ++S +    LS+L  L+L  N  + L    + P L +LQ LR+ + +   E   I + 
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Query: 383 GFNTMD 388
           G  +++
Sbjct: 146 GLTSLN 151

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS 200
           L   +  + L  N + V+P  A +P    L R+DLS+NQ+ +L   +F+GL SLN L L 
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 201 YNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPST 260
            NK+  L +     L +L++L L  N++    V A Q L ++  L L  N L   +   T
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGT 147
Query: 261 VPRLSSLKVLSIAHNQF 277
              L +++ + +A N F
Sbjct: 148 FSPLRAIQTMHLAQNPF 164

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           ++T++ L  N +   + P        L+ + +++NQ S +   A  GL  L SL  + N+
Sbjct: 33  TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
           I  L    F  L +L  L L  N+I  +   +   L NL  L L  N L+ + +   +PL
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 361 KSLQELRLDDN 371
           +++Q + L  N
Sbjct: 152 RAIQTMHLAQN 162

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 89/214 (41%), Gaps = 41/214 (19%)
Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSS--------LNFLDLSYNKLMTLSQDCLAPLVTLR 219
           P+L+ LDLS N L      SFKG  S        L +LDLS+N ++T+S + L  L  L 
Sbjct: 371 PSLEFLDLSRNGL------SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLE 423
Query: 220 VLRLQGNRLT-VSVVAALQGLRSVTDLDLSH------------------------NLLAG 254
            L  Q + L  +S  +    LR++  LD+SH                        N    
Sbjct: 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483
Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
              P     L +L  L ++  Q   +   A   L  L  L+  HN    L+   ++ L++
Sbjct: 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543
Query: 315 LSHLDLAHNRIVAVSGASLAHL-SNLTTLDLSHN 347
           L  LD + N I+      L H  S+L  L+L+ N
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           S  +LDLS N L   LG  +      L+VL ++  +  ++  GA   L  L++L    N 
Sbjct: 53  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITP 359
           I  L   +F  LS+L  L      + ++    + HL  L  L+++HN +++    +  + 
Sbjct: 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 171
Query: 360 LKSLQELRLDDNDI 373
           L +L+ L L  N I
Sbjct: 172 LTNLEHLDLSSNKI 185

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS 200
           L   +  + L  N + V+P  A +P    L R+DLS+NQ+ +L   +F+GL SLN L L 
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 201 YNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPST 260
            NK+  L +     L +L++L L  N++    V A Q L ++  L L  N L   +   T
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQT-IAKGT 147
Query: 261 VPRLSSLKVLSIAHNQF 277
              L +++ + +A N F
Sbjct: 148 FSPLRAIQTMHLAQNPF 164

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           ++T++ L  N +   + P        L+ + +++NQ S +   A  GL  L SL  + N+
Sbjct: 33  TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
           I  L    F  L +L  L L  N+I  +   +   L NL  L L  N L+ + +   +PL
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 361 KSLQELRLDDN 371
           +++Q + L  N
Sbjct: 152 RAIQTMHLAQN 162

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 19/285 (6%)
Query: 72  LRCTANKSDLYAISESLRGLE--PD----ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVI 125
             C AN S +     S++ LE  P     + +S++ C L     L   FL+ +TL    +
Sbjct: 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL---TM 337
Query: 126 SSGELKNISDGAFIGLSSP-LQALGLPNNLLSVVPTSALAPLAPN-LDRLDLSHNQLYKL 183
           + G +      +F  ++ P L  L L  N LS     + + L  N L  LDLS N    +
Sbjct: 338 NKGSI------SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-I 390
Query: 184 ENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
            + +F GL  L  LD  ++ L  +++      L  L  L +      +       GL S+
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450
Query: 243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
             L ++ N        +     ++L  L ++  Q   +  G    L +L  L+  HN + 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
Query: 303 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
            L+   +  L +LS LD + NRI    G       +L   +L++N
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
            +DLS N L  L++ SF   S L +LDLS  ++ T+       L  L  L L GN +   
Sbjct: 36  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95
Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291
              +  GL S+ +L      LA  L    + +L +LK L++AHN   S +  A       
Sbjct: 96  SPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAY------ 148
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
                            F  L+ L H+DL++N I  ++   L  L     ++LS
Sbjct: 149 -----------------FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 19/285 (6%)
Query: 72  LRCTANKSDLYAISESLRGLE--PD----ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVI 125
             C AN S +     S++ LE  P     + +S++ C L     L   FL+ +TL    +
Sbjct: 276 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTL---TM 332
Query: 126 SSGELKNISDGAFIGLSSP-LQALGLPNNLLSVVPTSALAPLAPN-LDRLDLSHNQLYKL 183
           + G +      +F  ++ P L  L L  N LS     + + L  N L  LDLS N    +
Sbjct: 333 NKGSI------SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-I 385
Query: 184 ENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
            + +F GL  L  LD  ++ L  +++      L  L  L +      +       GL S+
Sbjct: 386 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 445
Query: 243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
             L ++ N        +     ++L  L ++  Q   +  G    L +L  L+  HN + 
Sbjct: 446 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 505
Query: 303 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
            L+   +  L +LS LD + NRI    G       +L   +L++N
Sbjct: 506 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 550

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
            +DLS N L  L++ SF   S L +LDLS  ++ T+       L  L  L L GN +   
Sbjct: 31  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 90
Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL 291
              +  GL S+ +L      LA  L    + +L +LK L++AHN   S +  A       
Sbjct: 91  SPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAY------ 143
Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
                            F  L+ L H+DL++N I  ++   L  L     ++LS
Sbjct: 144 -----------------FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 180

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
           LDLS N L  L + SF     L  LDLS  ++ T+       L  L  L L GN +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 233 VAALQGLRSVTDLDLSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
           + A  GL S+  L      LA     P+G      L +LK L++AHN   S +       
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFK------- 140
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-- 346
                          L ++ F  L+ L HLDL+ N+I ++    L  L  +  L+LS   
Sbjct: 141 ---------------LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 347 -----NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
                NF++      I     L+EL LD N +   P+ I+    ++    +++  W
Sbjct: 185 SLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
           LDLS N L  L + SF     L  LDLS  ++ T+       L  L  L L GN +    
Sbjct: 34  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 233 VAALQGLRSVTDLDLSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
           + A  GL S+  L      LA     P+G      L +LK L++AHN   S +       
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFK------- 141
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-- 346
                          L ++ F  L+ L HLDL+ N+I ++    L  L  +  L+LS   
Sbjct: 142 ---------------LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 185
Query: 347 -----NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
                NF++      I     L+EL LD N +   P+ I+    ++    +++  W
Sbjct: 186 SLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 237

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
           LDLS N L  L + SF     L  LDLS  ++ T+       L  L  L L GN +    
Sbjct: 34  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 233 VAALQGLRSVTDLDLSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
           + A  GL S+  L      LA     P+G      L +LK L++AHN   S +       
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFK------- 141
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-- 346
                          L ++ F  L+ L HLDL+ N+I ++    L  L  +  L+LS   
Sbjct: 142 ---------------LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 185
Query: 347 -----NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
                NF++      I     L+EL LD N +   P+ I+    ++    +++  W
Sbjct: 186 SLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 237

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
           LDLS N L  L + SF     L  LDLS  ++ T+       L  L  L L GN +    
Sbjct: 35  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 233 VAALQGLRSVTDLDLSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
           + A  GL S+  L      LA     P+G      L +LK L++AHN   S +       
Sbjct: 95  LGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSFK------- 142
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-- 346
                          L ++ F  L+ L HLDL+ N+I ++    L  L  +  L+LS   
Sbjct: 143 ---------------LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 186
Query: 347 -----NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
                NF++      I     L+EL LD N +   P+ I+    ++    +++  W
Sbjct: 187 SLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 238

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 43/236 (18%)
Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
           LDLS N L  L + SF     L  LDLS  ++ T+       L  L  L L GN +    
Sbjct: 35  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 233 VAALQGLRSVTDLDLSHNLLAG----PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
           + A  GL S+  L      LA     P+G      L +LK L++AHN   S +       
Sbjct: 95  LGAFSGLSSLQKLVALETNLASLENFPIG-----HLKTLKELNVAHNLIQSFK------- 142
Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-- 346
                          L ++ F  L+ L HLDL+ N+I ++    L  L  +  L+LS   
Sbjct: 143 ---------------LPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 186
Query: 347 -----NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVW 397
                NF++      I     L+EL LD N +   P+ I+    ++    +++  W
Sbjct: 187 SLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 238

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%)
Query: 150 LPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ 209
           L +N L  + +  L    P+L +L+L  NQL  +E  +F+G S +  L L  NK+  +S 
Sbjct: 36  LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
                L  L+ L L  N+++  +  + + L S+T L+L+ N
Sbjct: 96  KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 48/106 (45%)
Query: 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
            T+L L+ N L          RL  L  L +  NQ + +   A  G   +  L    N+I
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Query: 302 DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
             + +  F  L  L  L+L  N+I  V   S  HL++LT+L+L+ N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 8/184 (4%)
Query: 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
            T LDL  N L   L       L+SL  L +  N+  S+  G    L  LT L+   NQ+
Sbjct: 30  TTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 302 DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 361
             L +  F  L+ L  L L  N++ ++       L+ L  L L  N L+++   +   L 
Sbjct: 89  QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 362 SLQELRLDDNDISMEPECIYVGFNTMDLELI--YSGVWRHSTLLIPVMLSLCTRSSVVTR 419
           SLQ + L DN      +C   G   +  E I  +SGV R+S   +    + C+ S    R
Sbjct: 149 SLQYIWLHDNPW----DCTCPGIRYLS-EWINKHSGVVRNSAGSVAPDSAKCSGSGKPVR 203
Query: 420 YRYC 423
              C
Sbjct: 204 SIIC 207

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 310 RALSTLSHL---DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 366
           + LS   HL   DL++NRI  +S  S ++++ L TL LS+N LR +       LKSL+ L
Sbjct: 48  KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
Query: 367 RLDDNDISMEPE 378
            L  NDIS+ PE
Sbjct: 108 SLHGNDISVVPE 119

>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 23/188 (12%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN----LL 252
           LDLS N L  +S   LAP   L +L L  N L  ++   L+ L ++  LDL++N    LL
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL 96
Query: 253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL 312
            GP          S++ L  A+N  S V      G     ++   +N+I +L D      
Sbjct: 97  VGP----------SIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCR 143
Query: 313 STLSHLDLAHNRIVAVSGASLAHLSN-LTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           S + +LDL  N I  V+ A LA  S+ L  L+L +NF+  +   ++     L+ L L  N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN 201
Query: 372 DIS-MEPE 378
            ++ M PE
Sbjct: 202 KLAFMGPE 209

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 193 SLNFLDLSYNKLMT---LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH 249
           +L FLD+S N   T      DC A    L+ L + GN+L+     A+     +  L++S 
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL-DKLTSLSCHHNQI------- 301
           N   GP+ P  +P L SL+ LS+A N+F+      L+G  D LT L    N         
Sbjct: 257 NQFVGPIPP--LP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 302 ------------------DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS-NLTTL 342
                               L   +   +  L  LDL+ N        SL +LS +L TL
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 343 DL-SHNFLRALTQDLI-TPLKSLQELRLDDNDIS 374
           DL S+NF   +  +L   P  +LQEL L +N  +
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 109/280 (38%), Gaps = 34/280 (12%)
Query: 129 ELK--NISDGAFIGLSSPL-----QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLY 181
           ELK  NIS   F+G   PL     Q L L  N  +      L+     L  LDLS N  Y
Sbjct: 245 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 182 KLENTSFKGLSSLNFLDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLR 240
                 F   S L  L LS N     L  D L  +  L+VL L  N  +  +  +L  L 
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 241 -SVTDLDLSHNLLAGPLGPS-------------------------TVPRLSSLKVLSIAH 274
            S+  LDLS N  +GP+ P+                         T+   S L  L ++ 
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
           N  S     +L  L KL  L    N ++         + TL  L L  N +     + L+
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           + +NL  + LS+N L       I  L++L  L+L +N  S
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 193 SLNFLDLSYNKLMT---LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH 249
           +L FLD+S N   T      DC A    L+ L + GN+L+     A+     +  L++S 
Sbjct: 198 NLEFLDVSSNNFSTGIPFLGDCSA----LQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL-DKLTSLSCHHNQI------- 301
           N   GP+ P  +P L SL+ LS+A N+F+      L+G  D LT L    N         
Sbjct: 254 NQFVGPIPP--LP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 302 ------------------DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS-NLTTL 342
                               L   +   +  L  LDL+ N        SL +LS +L TL
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 343 DL-SHNFLRALTQDLI-TPLKSLQELRLDDNDIS 374
           DL S+NF   +  +L   P  +LQEL L +N  +
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 161 SALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV 220
           S  A +  N   L L  NQ+ KLE   F  L +L  L L  N+L  L       L  L V
Sbjct: 33  SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92
Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
           L L  N+LTV   A    L  + +L +  N L     P  + RL+ L  L++  NQ  S+
Sbjct: 93  LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSI 150
Query: 281 RRGALAGLDKLTSLS 295
             GA    D+L+SL+
Sbjct: 151 PHGA---FDRLSSLT 162

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 237 QGLRSVTDL-DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 295
           Q L S T L DLSHN L+      T  RL++L  L ++HN  + +   A   +  L  L 
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 296 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
              N +  L++  F  L  L  L L +N IV V   +   ++ L  L LS N +     +
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154
Query: 356 LITPLKSLQELRLDD 370
           LI     L +L L D
Sbjct: 155 LIKDGNKLPKLMLLD 169

>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX Length = 487

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN----LL 252
           LDLS N L  +S   LAP   L +L L  N L  ++   L+ L ++  LDL++N    LL
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL 96
Query: 253 AGP------LGPSTVPRLS-----SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
            GP         + + R+S       K + +A+N+ + +R        ++  L    N+I
Sbjct: 97  VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 302 DVLEDHSFRALS-TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
           D +      A S TL HL+L +N I  V G  +   + L TLDLS N L
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKL 203

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 26/218 (11%)
Query: 169 NLDRLDLSHNQLYKLENTSF--KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
           NL  LDLSHN +   +  S   K LS L  L+LS+N+ + L          L +L L   
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 227 RLTVSV-VAALQGLRSVTDLDLSH--------NLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
           RL ++   +  Q L  +  L+L++        +LLAG      +P L  L  L   H Q 
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAG------LPVLRHLN-LKGNHFQD 460
Query: 278 SSVRRGAL----AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333
            ++ +  L      L+ L   SC    ID     +F +L  +SH+DL+HN +   S  SL
Sbjct: 461 GTITKTNLLQTVGSLEVLILSSCGLLSID---QQAFHSLGKMSHVDLSHNSLTCDSIDSL 517
Query: 334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           +HL  +  L+L+ N +  ++  L+  L     + L  N
Sbjct: 518 SHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHN 554

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 27/165 (16%)
Query: 194 LNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA 253
           +N++DLS N +  L++   + L  L+ L+++               +    L + +N   
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVE---------------QQTPGLVIRNNTFR 76
Query: 254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID--VLEDHSFRA 311
           G         LSSL +L + +NQF  +  GA  GL  L  L+     +D  VL  + F+ 
Sbjct: 77  G---------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 312 LSTLSHLDLAHNRIVAVSGASLA-HLSNLTTLDLSHNFLRALTQD 355
           L++L  L L  N I  +  AS   ++     LDL+ N ++++ ++
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 91/186 (48%), Gaps = 25/186 (13%)
Query: 186 TSFKGLSSLN---FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
           T+ +G+  LN    L+L  N++  L+   L  L  +  L L GN L    V+A+ GL+S+
Sbjct: 60  TTIEGIQYLNNLIGLELKDNQITDLT--PLKNLTKITELELSGNPL--KNVSAIAGLQSI 115
Query: 243 TDLDLSHNLLAG--PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
             LDL+   +    PL       LS+L+VL +  NQ +++    LAGL  L  LS  +NQ
Sbjct: 116 KTLDLTSTQITDVTPLA-----GLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNNQ 168
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
           ++ L       LS L+ L    N+I  +S   LA L NL  + L  N +       ++PL
Sbjct: 169 VNDL--TPLANLSKLTTLRADDNKISDIS--PLASLPNLIEVHLKDNQISD-----VSPL 219
Query: 361 KSLQEL 366
            +L  L
Sbjct: 220 ANLSNL 225

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 261 VPRLSSLK--VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
           VP+  S K  +L+I+ N  S +    +  L KL  L   HN+I  L+   F+    L +L
Sbjct: 15  VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74
Query: 319 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
           DL+HN++V +S        NL  LDLS N   AL
Sbjct: 75  DLSHNKLVKISCHPTV---NLKHLDLSFNAFDAL 105

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 268 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA 327
           K LS++ N  S +R   ++ L +L  L   HN+I  L+ H F     L +LD++HNR+  
Sbjct: 55  KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114
Query: 328 VSGASLAHLSNLTTLDLSHN 347
           +S   +A L +   LDLS N
Sbjct: 115 ISCCPMASLRH---LDLSFN 131

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 241 SVTDLDLSHNLLAG-PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
           S T L+L  N L   P G     +L+ L  LS++ NQ  S+  G    L KLT L  H N
Sbjct: 29  SATRLELESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           ++  L +  F  L+ L  L L  N++ +V       L++L  + L  N
Sbjct: 87  KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 186 TSFKGLSSLN---FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
           T+ +G+  LN    L+L  N++  L+   L  L  +  L L GN L    V+A+ GL+S+
Sbjct: 54  TTIEGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL--KNVSAIAGLQSI 109
Query: 243 TDLDLSHNLLAG--PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
             LDL+   +    PL       LS+L+VL +  NQ +++    LAGL  L  LS  + Q
Sbjct: 110 KTLDLTSTQITDVTPLA-----GLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQ 162
Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           +  L       LS L+ L    N+I  +S   LA L NL  + L +N
Sbjct: 163 VSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNN 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	694
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-55
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-45
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-51
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-50
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-49
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-43
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-41
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-41
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-47
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-43
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-44
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-46
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-31
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-31
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-44
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-43
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-38
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-36
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-32
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-25
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-32
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-25
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-31
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-31
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-29
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-28
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-24
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-23
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-20
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-17
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-14
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-14
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-14
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  196 bits (500), Expect = 1e-55
 Identities = 83/326 (25%), Positives = 132/326 (40%), Gaps = 16/326 (4%)

Query: 55  SCPSIKNDLCACDLP-HTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGK 113
            CP      C C      + C   +    A+ E +          LLD   + +  L   
Sbjct: 2   GCPP----RCECSAQDRAVLCHRKR--FVAVPEGI-----PTETRLLDLGKNRIKTLNQD 50

Query: 114 FLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR 172
                  L  L ++   +  +  GAF  L + L+ LGL +N L ++P      L  NL +
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNNLFN-LRTLGLRSNRLKLIPLGVFTGL-SNLTK 108

Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
           LD+S N++  L +  F+ L +L  L++  N L+ +S    + L +L  L L+   LT   
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168

Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
             AL  L  +  L L H  +   +   +  RL  LKVL I+H  +             LT
Sbjct: 169 TEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 293 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
           SLS  H  +  +   + R L  L  L+L++N I  + G+ L  L  L  + L    L  +
Sbjct: 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287

Query: 353 TQDLITPLKSLQELRLDDNDISMEPE 378
                  L  L+ L +  N ++   E
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  168 bits (428), Expect = 1e-45
 Identities = 56/244 (22%), Positives = 109/244 (44%), Gaps = 4/244 (1%)

Query: 108 TVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPL 166
            ++P     G++ L  L IS  ++  + D  F  L + L++L + +N L  +   A + L
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGL 151

Query: 167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
             +L++L L    L  +   +   L  L  L L +  +  +       L  L+VL +   
Sbjct: 152 -NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA 286
               ++        ++T L ++H  L   +    V  L  L+ L++++N  S++    L 
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269

Query: 287 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
            L +L  +     Q+ V+E ++FR L+ L  L+++ N++  +  +    + NL TL L  
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 347 NFLR 350
           N L 
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  131 bits (332), Expect = 7e-33
 Identities = 41/188 (21%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
           +    +     + + + +         R+L L  NR+             + +L+L+ N+
Sbjct: 11  AQDRAVLCHRKRFVAVPEGIPT---ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA 311
           ++  + P     L +L+ L +  N+   +  G   GL  LT L    N+I +L D+ F+ 
Sbjct: 68  VSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 312 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           L  L  L++  N +V +S  + + L++L  L L    L ++  + ++ L  L  LRL   
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 372 DISMEPEC 379
           +I+   + 
Sbjct: 187 NINAIRDY 194

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +L+ L +  N+   +  G   GL  LT L    N+I +L D+ F +
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 624 DINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 683
           +I+          +    +   +L  LSI H   ++V   A+  L  L  L+  +N I  
Sbjct: 206 EISHWPYLDT---MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 684 LEDHSFSN 691
           +E      
Sbjct: 263 IEGSMLHE 270

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L+ L++++N  S++    L  L +L  +     Q+ V+E ++F  
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +LK L +  N    +   A +GL+ L  L+     +  +   + S+
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           LS+L  L I+ N+   +       L  L SL    N +  +   +FS 
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L+SL+ L++     +S+   AL+ L  L  L   H  I+ + D+SF  
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
              L+ L +  N  S+V  GA   L  L +L    N++ ++    F+ 
Sbjct: 55  FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
           L  L+ + +   Q + V   A  GL+ L  L+   NQ+  LE+  F +V
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 9/49 (18%), Positives = 23/49 (46%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           + +  ++L +  N+  ++ +   A    L  L  + N +  +E  +F+N
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  179 bits (455), Expect = 7e-51
 Identities = 82/352 (23%), Positives = 135/352 (38%), Gaps = 58/352 (16%)

Query: 35  SSPSTPTSTLPSSPST-PTPWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEP 93
           +S   P    P  P   P    CP      C C L                         
Sbjct: 3   ASGIGPEEHFPEVPEIEPMGPVCPF----RCQCHL------------------------- 33

Query: 94  DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
                ++ C+   +  +P        L  L + + ++  I DG F  L + L  L L NN
Sbjct: 34  ----RVVQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKN-LHTLILINN 86

Query: 154 LLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLA 213
            +S +   A APL   L+RL LS NQL +L     K L  L    +  N++  + +    
Sbjct: 87  KISKISPGAFAPL-VKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFN 142

Query: 214 PLVTLRVLRLQGNRLTVSVV--AALQGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKV 269
            L  + V+ L  N L  S +   A QG++ ++ + ++   +      +T+P+    SL  
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI------TTIPQGLPPSLTE 196

Query: 270 LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 329
           L +  N+ + V   +L GL+ L  L    N I  +++ S      L  L L +N++V V 
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256

Query: 330 GASLAHLSNLTTLDLSHNFLRALTQDLITP------LKSLQELRLDDNDISM 375
           G  LA    +  + L +N + A+  +   P        S   + L  N +  
Sbjct: 257 GG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  151 bits (384), Expect = 6e-41
 Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 13/229 (5%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           +  L  VP      L P+   LDL +N++ ++++  FK L +L+ L L  NK+  +S   
Sbjct: 40  DLGLEKVPKD----LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
            APLV L  L L  N+L        + L+    L +  N +   +  S    L+ + V+ 
Sbjct: 96  FAPLVKLERLYLSKNQLKELPEKMPKTLQE---LRVHENEITK-VRKSVFNGLNQMIVVE 151

Query: 272 IAHNQFSS--VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 329
           +  N   S  +  GA  G+ KL+ +      I  +         +L+ L L  N+I  V 
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVD 208

Query: 330 GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
            ASL  L+NL  L LS N + A+    +     L+EL L++N +   P 
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (307), Expect = 1e-30
 Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 19/227 (8%)

Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLL--SVVPTSALAP 165
             LP K  +   L  L +   E+  +    F GL+  +  + L  N L  S +   A   
Sbjct: 113 KELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQG 169

Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
           +   L  + ++   +  +         SL  L L  NK+  +    L  L  L  L L  
Sbjct: 170 M-KKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
           N ++     +L     + +L L++N L     P  +     ++V+ + +N  S++     
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 286 A------GLDKLTSLSCHHNQIDV--LEDHSFRALSTLSHLDLAHNR 324
                       + +S   N +    ++  +FR +   + + L + +
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
           L  SL  L +  N+ + V   +L GL+ L  L    N I  +++ S +N 
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFSN 691
           +  +L+ L +  N+ + VR+    GL+++  +    N +    +E+ +F  
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +L  L + +N+ S +  GA A L KL  L    NQ+  L +     
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT 122

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 10/49 (20%), Positives = 23/49 (46%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L     +L + +N+ + ++ G    L  L +L   +N+I  +   +F+ 
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  179 bits (457), Expect = 5e-50
 Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 3/232 (1%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
           G+S+  + L L  N + ++  ++   L  +L+ L LS N +  +E  +F GL++LN L+L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
             N+L T+       L  L+ L L+ N +      A   + S+  LDL        +   
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 319
               LS+L+ L++A      +    L  L KL  L    N +  +   SF+ L  L  L 
Sbjct: 180 AFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           +  ++I  +   +  +L +L  ++L+HN L  L  DL TPL  L+ + L  N
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  142 bits (360), Expect = 8e-37
 Identities = 59/235 (25%), Positives = 90/235 (38%), Gaps = 32/235 (13%)

Query: 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY 201
           S+    +      L  VP      ++ N   L+L  NQ+  ++  SFK L  L  L LS 
Sbjct: 42  SNQFSKVICVRKNLREVPDG----ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97

Query: 202 NKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV 261
           N + T+       L  L  L L  NRLT                 + +            
Sbjct: 98  NHIRTIEIGAFNGLANLNTLELFDNRLTT----------------IPNGAFVY------- 134

Query: 262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALSTLSHLDL 320
             LS LK L + +N   S+   A   +  L  L      ++  + + +F  LS L +L+L
Sbjct: 135 --LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 321 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM 375
           A   +  +   +L  L  L  LDLS N L A+       L  LQ+L +  + I +
Sbjct: 193 AMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  124 bits (312), Expect = 2e-30
 Identities = 62/264 (23%), Positives = 96/264 (36%), Gaps = 56/264 (21%)

Query: 85  SESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP 144
             S + L   E + L    +  +    G F     L+ L +    L  I +GAF+ L   
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDNRLTTIPNGAFVYL--- 135

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS-YNK 203
                                    L  L L +N +  + + +F  + SL  LDL    +
Sbjct: 136 -----------------------SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 204 LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR 263
           L  +S+     L  LR L L    L    +  L  L  + +LDLS               
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIKLDELDLS--------------- 215

Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
                      N  S++R G+  GL  L  L    +QI V+E ++F  L +L  ++LAHN
Sbjct: 216 ----------GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 324 RIVAVSGASLAHLSNLTTLDLSHN 347
            +  +       L +L  + L HN
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  103 bits (259), Expect = 9e-24
 Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
            +   L+L  N +   +  ++   L  L++L ++ N   ++  GA  GL  L +L    N
Sbjct: 64  TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH-NFLRALTQDLIT 358
           ++  + + +F  LS L  L L +N I ++   +   + +L  LDL     L  +++    
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 359 PLKSLQELRLDDNDISMEPE 378
            L +L+ L L   ++   P 
Sbjct: 183 GLSNLRYLNLAMCNLREIPN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L  L ++ N  S++R G+  GL  L  L    +QI V+E ++F N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L++L  L +  N+ +++  GA   L KL  L   +N I+ +  ++F+ 
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 97  VSLLDCTLSN---VTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
           + L +  LS      + PG F   + L  L +   +++ I   AF  L S L  + L +N
Sbjct: 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS-LVEINLAHN 265

Query: 154 LLSVVPTSALAPLAPNLDRLDLSHNQL 180
            L+++P     PL  +L+R+ L HN  
Sbjct: 266 NLTLLPHDLFTPL-HHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L++L ++ N   ++  GA  GL  L +L    N++  + + +F  
Sbjct: 87  LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           LS+L+ L++A      +    L  L KL  L    N +  +   SF  
Sbjct: 184 LSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQG 229

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L+ L +  +Q   + R A   L  L  ++  HN + +L    F+ 
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           ++ ++L++  NQ   ++  +   L  L  L    N I  +E  +F+ 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  178 bits (454), Expect = 2e-49
 Identities = 65/232 (28%), Positives = 103/232 (44%), Gaps = 3/232 (1%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
           G+ S  + L L  N + ++       L  +L+ L L  N + ++E  +F GL+SLN L+L
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
             N L  +       L  LR L L+ N +      A   + S+  LDL        +   
Sbjct: 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD 319
               L +LK L++       +    L  L  L  L    N    +   SF  LS+L  L 
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           + ++++  +   +   L++L  L+L+HN L +L  DL TPL+ L EL L  N
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  161 bits (408), Expect = 3e-43
 Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 8/238 (3%)

Query: 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY 201
           S+    +      LS VP      +  N   L+L  N +  ++  +F+ L  L  L L  
Sbjct: 53  SNQFSKVVCTRRGLSEVPQG----IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 202 NKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV 261
           N +  +       L +L  L L  N LTV    A + L  + +L L +N +   +     
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAF 167

Query: 262 PRLSSLKVLSIAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL 320
            R+ SL  L +    +   +  GA  GL  L  L+     I  +   +   L  L  L++
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEM 225

Query: 321 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
           + N    +   S   LS+L  L + ++ +  + ++    L SL EL L  N++S  P 
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  156 bits (395), Expect = 2e-41
 Identities = 74/305 (24%), Positives = 129/305 (42%), Gaps = 43/305 (14%)

Query: 46  SSPSTPTPWSCPSIKNDLCACD-LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTL 104
           ++ ++  P +CPS    +C+C      + CT     L  + + +           L+   
Sbjct: 36  AAAASAGPQNCPS----VCSCSNQFSKVVCTRRG--LSEVPQGI-----PSNTRYLNLME 84

Query: 105 SNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSAL 163
           +N+ ++       +  L  L +    ++ I  GAF GL+S L  L L +N L+V+P+ A 
Sbjct: 85  NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS-LNTLELFDNWLTVIPSGAF 143

Query: 164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS-YNKLMTLSQDCLAPLVTLRVLR 222
             L   L  L L +N +  + + +F  + SL  LDL    KL  +S+     L  L+ L 
Sbjct: 144 EYL-SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202

Query: 223 LQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR 282
           L    +    +  L  L  + +L++S                          N F  +R 
Sbjct: 203 LGMCNIK--DMPNLTPLVGLEELEMS-------------------------GNHFPEIRP 235

Query: 283 GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 342
           G+  GL  L  L   ++Q+ ++E ++F  L++L  L+LAHN + ++       L  L  L
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295

Query: 343 DLSHN 347
            L HN
Sbjct: 296 HLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (261), Expect = 6e-24
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 7/174 (4%)

Query: 106 NVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPN-NLLSVVPTSAL 163
            +TV+P    E ++ L  L + +  +++I   AF  + S L  L L     L  +   A 
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS-LMRLDLGELKKLEYISEGAF 192

Query: 164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
             L  NL  L+L    +  +   +   L  L  L++S N    +       L +L+ L +
Sbjct: 193 EGL-FNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
             +++++    A  GL S+ +L+L+HN L+  L       L  L  L + HN +
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L+ L ++ N F  +R G+  GL  L  L   ++Q+ ++E ++F  
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L+SL  L +  N  + +  GA   L KL  L   +N I+ +  ++F+ 
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L+VL +  N    +  GA  GL  L +L    N + V+   +F  
Sbjct: 98  LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           LSSLK L + ++Q S + R A  GL  L  L+  HN +  L    F+ 
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           S+ + L++  N    ++      L  L  L    N I  +E  +F+ 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  172 bits (437), Expect = 3e-48
 Identities = 67/286 (23%), Positives = 117/286 (40%), Gaps = 25/286 (8%)

Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
           + C+   +  +P +     TL  L + + ++  +    F GL   L AL L NN +S + 
Sbjct: 38  VQCSDLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQH-LYALVLVNNKISKIH 94

Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
             A +PL   L +L +S N L ++       L  L    +  N++  + +   + L  + 
Sbjct: 95  EKAFSPL-RKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNMN 150

Query: 220 VLRLQGNRLTVSVV--AALQGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHN 275
            + + GN L  S     A  GL  +  L +S   L      + +P+    +L  L + HN
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL------TGIPKDLPETLNELHLDHN 203

Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
           +  ++    L    KL  L   HNQI ++E+ S   L TL  L L +N++  V    L  
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPD 262

Query: 336 LSNLTTLDLSHNFLRALTQDLITPLK------SLQELRLDDNDISM 375
           L  L  + L  N +  +  +   P+           + L +N +  
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  152 bits (386), Expect = 3e-41
 Identities = 75/350 (21%), Positives = 136/350 (38%), Gaps = 36/350 (10%)

Query: 35  SSPSTPTSTLPSSPSTPTPWS--CPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLE 92
           +S +  TS +P   S P  +S  CP      C C L   ++C+     L A+ + +    
Sbjct: 4   ASGAETTSGIPDLDSLPPTYSAMCPF----GCHCHL-RVVQCSDLG--LKAVPKEI---- 52

Query: 93  PDERVSLLDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLP 151
                +LLD   ++++ L     +G+  L+ LV+ + ++  I + AF  L   LQ L + 
Sbjct: 53  -SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK-LQKLYIS 110

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL--MTLSQ 209
            N L  +P +       +L  L +  N++ K+    F GL ++N +++  N L       
Sbjct: 111 KNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
                L  L  LR+   +LT       + L     L L HN +   +    + R S L  
Sbjct: 167 GAFDGL-KLNYLRISEAKLTGIPKDLPETLNE---LHLDHNKIQA-IELEDLLRYSKLYR 221

Query: 270 LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 329
           L + HNQ   +  G+L+ L  L  L   +N++  +       L  L  + L  N I  V 
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITKVG 280

Query: 330 GASLAHL------SNLTTLDLSHNFL--RALTQDLITPLKSLQELRLDDN 371
                 +      +    + L +N +    +       +     ++  + 
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  145 bits (368), Expect = 8e-39
 Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 14/236 (5%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           L+ +   +  L  VP      ++P+   LDL +N + +L    FKGL  L  L L  NK+
Sbjct: 35  LRVVQCSDLGLKAVPKE----ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
             + +   +PL  L+ L +  N L          L     L +  N +   +       L
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVE---LRIHDNRIRK-VPKGVFSGL 146

Query: 265 SSLKVLSIAHNQ--FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
            ++  + +  N    S    GA  GL KL  L     ++  +       L+ L    L H
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNEL---HLDH 202

Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
           N+I A+    L   S L  L L HN +R +    ++ L +L+EL LD+N +S  P 
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  117 bits (296), Expect = 3e-29
 Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 14/213 (6%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L I    ++ +  G F GL + +  + +  N L        A     L+ L +S  +
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
           L  +         +LN L L +NK+  +  + L     L  L L  N++ +    +L  L
Sbjct: 184 LTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD------KLTS 293
            ++ +L L +N L+    P+ +P L  L+V+ +  N  + V       +           
Sbjct: 241 PTLRELHLDNNKLSRV--PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298

Query: 294 LSCHHNQIDV--LEDHSFRALSTLSHLDLAHNR 324
           +S  +N +    ++  +FR ++    +   + +
Sbjct: 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 15/206 (7%)

Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
           +  G+  L+ L  +Y+ +      C      LRV++     L  +V   +      T LD
Sbjct: 9   TTSGIPDLDSLPPTYSAMCPFGCHC-----HLRVVQCSDLGLK-AVPKEI--SPDTTLLD 60

Query: 247 LSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 306
           L +N ++  L       L  L  L + +N+ S +   A + L KL  L    N +  +  
Sbjct: 61  LQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119

Query: 307 HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR--ALTQDLITPLKSLQ 364
           +      +L  L +  NRI  V     + L N+  +++  N L            LK L 
Sbjct: 120 NLPS---SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LN 175

Query: 365 ELRLDDNDISMEPECIYVGFNTMDLE 390
            LR+ +  ++  P+ +    N + L+
Sbjct: 176 YLRISEAKLTGIPKDLPETLNELHLD 201

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
           L  +L  L + HN+  ++    L    KL  L   HNQI ++E+ S S +
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L  L + +N+ S +   A + L KL  L    N +  +  +  S+
Sbjct: 77  LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS 124

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 645 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
               +L + +N  S +R+    GL  L +L   +N+I  + + +FS 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  167 bits (426), Expect = 4e-47
 Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 8/240 (3%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK--LENTSFKGLSSLNFL 197
           G+ S    L L +N L  +P      L   L +L LS N L      + S  G +SL +L
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 198 DLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPL 256
           DLS+N ++T+S +    L  L  L  Q + L  +S  +    LR++  LD+SH       
Sbjct: 84  DLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-A 141

Query: 257 GPSTVPRLSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
                  LSSL+VL +A N F  +        L  LT L     Q++ L   +F +LS+L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL-KSLQELRLDDNDIS 374
             L+++HN   ++       L++L  LD S N +    +  +     SL  L L  ND +
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  159 bits (405), Expect = 3e-44
 Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 7/251 (2%)

Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
           + C    +T +P       T   L + S +L+++  G F  L+  L  L L +N LS   
Sbjct: 12  IRCNSKGLTSVPTGIPSSATR--LELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKG 68

Query: 160 TSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCL-APLVT 217
             + +     +L  LDLS N +  + +  F GL  L  LD  ++ L  +S+  +   L  
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 218 LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
           L  L +      V+      GL S+  L ++ N       P     L +L  L ++  Q 
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 278 SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL- 336
             +   A   L  L  L+  HN    L+   ++ L++L  LD + N I+      L H  
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247

Query: 337 SNLTTLDLSHN 347
           S+L  L+L+ N
Sbjct: 248 SSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  157 bits (400), Expect = 2e-43
 Identities = 62/230 (26%), Positives = 92/230 (40%), Gaps = 8/230 (3%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT--LSQ 209
           +  L+ VPT     +  +  RL+L  N+L  L +  F  L+ L  L LS N L       
Sbjct: 16  SKGLTSVPTG----IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71

Query: 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
                  +L+ L L  N +  ++ +   GL  +  LD  H+ L      S    L +L  
Sbjct: 72  QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 270 LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAHNRIVAV 328
           L I+H        G   GL  L  L    N   +      F  L  L+ LDL+  ++  +
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

Query: 329 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
           S  +   LS+L  L++SHN   +L       L SLQ L    N I    +
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
           LSSL+VL+++HN F S+       L+ L  L    N I   +     + 
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +L  L ++  Q   +   A   L  L  L+  HN    L+   +  
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 644 LSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           LSSL+VL +A N F  +        L  LT L     Q++ L   +F++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  167 bits (425), Expect = 4e-46
 Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 21/295 (7%)

Query: 100 LDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
           +    S +  LP   L+    +  L ++  +++ I   AF    + +Q L +  N +  +
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIRYL 108

Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
           P      + P L  L L  N L  L    F     L  L +S N L  +  D      +L
Sbjct: 109 PPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
           + L+L  NRLT      L  + S+   ++S+NLL      ST+    +++ L  +HN  +
Sbjct: 168 QNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN 218

Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
            VR        +LT L   HN +   +         L  +DL++N +  +       +  
Sbjct: 219 VVRGPVNV---ELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273

Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIY 393
           L  L +S+N L AL      P+ +L+ L L  N +               LE +Y
Sbjct: 274 LERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQ---PQFDRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  161 bits (410), Expect = 6e-44
 Identities = 51/295 (17%), Positives = 107/295 (36%), Gaps = 24/295 (8%)

Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
           +         +          + + I             I L++  + +   N+ +  +P
Sbjct: 3   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTMRKLP 61

Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
            + L      ++ L+L+  Q+ +++  +F    ++  L + +N +  L       +  L 
Sbjct: 62  AALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
           VL L+ N L+            +T L +S+N L   +   T    +SL+ L ++ N+ + 
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH 179

Query: 280 VRRGALAGLDK----------------LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
           V    +  L                  +  L   HN I+V+          L+ L L HN
Sbjct: 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHN 236

Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
            +   +   L +   L  +DLS+N L  +       ++ L+ L + +N +     
Sbjct: 237 NLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  153 bits (389), Expect = 4e-41
 Identities = 61/280 (21%), Positives = 104/280 (37%), Gaps = 29/280 (10%)

Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
              F    T+  L +    ++ +    F  +   L  L L  N LS +P        P L
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERNDLSSLPRGIFHNT-PKL 143

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVT------------- 217
             L +S+N L ++E+ +F+  +SL  L LS N+L  +    +  L               
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203

Query: 218 ---LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
              +  L    N + V        L     L L HN L      + +     L  + +++
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVELTI---LKLQHNNLTDT---AWLLNYPGLVEVDLSY 257

Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
           N+   +       + +L  L   +N++  L +   + + TL  LDL+HN ++ V   +  
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVE-RNQP 315

Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
               L  L L HN +  L         +L+ L L  ND  
Sbjct: 316 QFDRLENLYLDHNSIVTLKLST---HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (294), Expect = 2e-28
 Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 4/200 (2%)

Query: 181 YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLR 240
           YK  +++ +       + +               L   +++  + + +     A L   R
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
            V  L+L+   +   +         +++ L +  N    +       +  LT L    N 
Sbjct: 70  QVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
           +  L    F     L+ L +++N +  +   +    ++L  L LS N L  +   L   +
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL---I 185

Query: 361 KSLQELRLDDNDISMEPECI 380
            SL    +  N +S     I
Sbjct: 186 PSLFHANVSYNLLSTLAIPI 205

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 4e-20
 Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 19/193 (9%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           +  L  S   +  +     + L      L L +N L+      L    P L  +DLS+N+
Sbjct: 207 VEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTA--WLLNY-PGLVEVDLSYNE 259

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
           L K+    F  +  L  L +S N+L+ L+     P+ TL+VL L  N L   V       
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 240 RSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
             + +L L HN +       T+      +LK L+++HN +      AL     +   +  
Sbjct: 318 DRLENLYLDHNSI------VTLKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVD 369

Query: 298 HNQIDVLEDHSFR 310
                   D+   
Sbjct: 370 DADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 5/110 (4%)

Query: 274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA-----LSTLSHLDLAHNRIVAV 328
           +N             +       +   ID+     +       L+    +   ++ +  +
Sbjct: 1   YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 60

Query: 329 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
             A L     +  L+L+   +  +         ++Q+L +  N I   P 
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           +  L VL +  N  SS+ RG      KLT+LS  +N ++ +ED +F  
Sbjct: 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 7/48 (14%), Positives = 25/48 (52%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L++ K+++  ++    +    L    ++  L+ +  QI+ ++ ++F+ 
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 91

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
              +++L++   Q   +   A A    +  L    N I  L  H F N
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 9/48 (18%), Positives = 16/48 (33%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
             +++ L +  N    +       +  LT L    N +  L    F N
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 7/49 (14%), Positives = 18/49 (36%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
              L  LS+++N    +          L +L    N++  ++     ++
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  163 bits (415), Expect = 8e-46
 Identities = 66/221 (29%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
              L  VP      +     R+ L  N++  +   SF+   +L  L L  N L  +    
Sbjct: 20  QQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 212 LAPLVTLRVLRLQGN-RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL 270
              L  L  L L  N +L     A   GL  +  L L    L   LGP     L++L+ L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYL 134

Query: 271 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 330
            +  N   ++       L  LT L  H N+I  + + +FR L +L  L L  NR+  V  
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
            +   L  L TL L  N L AL  + + PL++LQ LRL+DN
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  123 bits (312), Expect = 1e-31
 Identities = 60/199 (30%), Positives = 83/199 (41%), Gaps = 5/199 (2%)

Query: 106 NVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL-LSVVPTSAL 163
            ++ +P         L  L + S  L  I   AF GL+  L+ L L +N  L  V  +  
Sbjct: 43  RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-LEQLDLSDNAQLRSVDPATF 101

Query: 164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
             L   L  L L    L +L    F+GL++L +L L  N L  L  D    L  L  L L
Sbjct: 102 HGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
            GNR++     A +GL S+  L L  N +A  + P     L  L  L +  N  S++   
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 284 ALAGLDKLTSLSCHHNQID 302
           ALA L  L  L  + N   
Sbjct: 220 ALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  123 bits (310), Expect = 2e-31
 Identities = 45/187 (24%), Positives = 67/187 (35%), Gaps = 24/187 (12%)

Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
           ++   + L  N++  +          L +L L  N L     AA  GL  +  LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN- 90

Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA 311
                                   Q  SV      GL +L +L      +  L    FR 
Sbjct: 91  -----------------------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 312 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           L+ L +L L  N + A+   +   L NLT L L  N + ++ +     L SL  L L  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 372 DISMEPE 378
            ++    
Sbjct: 188 RVAHVHP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +L  L +  N+ SSV   A  GL  L  L  H N++  +  H+F +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L++L+ L +  N   ++       L  LT L  H N+I  + + +F  
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 17/48 (35%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L  L +       +  G   GL  L  L    N +  L D +F +
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L SL  L +  N+ + V   A   L +L +L    N +  L   + + 
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN-QIDVLEDHSFSN 691
             +L +L +  N  + +   A  GL  L  L    N Q+  ++  +F  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 9/49 (18%), Positives = 22/49 (44%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           + ++ + + +  N+ S V   +      LT L  H N +  ++  +F+ 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  165 bits (420), Expect = 7e-44
 Identities = 69/295 (23%), Positives = 117/295 (39%), Gaps = 21/295 (7%)

Query: 100 LDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
           +    S +  LP   L+    +  L ++  +++ I   AF    + +Q L +  N +  +
Sbjct: 56  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAIRYL 114

Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
           P      + P L  L L  N L  L    F     L  L +S N L  +  D      +L
Sbjct: 115 PPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173

Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
           + L+L  NRLT   ++ +  L      ++S+NLL      ST+    +++ L  +HN  +
Sbjct: 174 QNLQLSSNRLTHVDLSLIPSLFH---ANVSYNLL------STLAIPIAVEELDASHNSIN 224

Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
            VR        +LT L   HN +   +         L  +DL++N +  +       +  
Sbjct: 225 VVRGPVNV---ELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIY 393
           L  L +S+N L AL      P+ +L+ L L  N +               LE +Y
Sbjct: 280 LERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQ---PQFDRLENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  163 bits (413), Expect = 7e-43
 Identities = 58/286 (20%), Positives = 105/286 (36%), Gaps = 23/286 (8%)

Query: 98  SLLDCTLSNVTVLPGKFLEGVTLHG---LVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
              D  +   T       E +TL+    +   +  ++ +           ++ L L +  
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ-VELLNLNDLQ 86

Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
           +  + T A A     + +L +  N +  L    F+ +  L  L L  N L +L +     
Sbjct: 87  IEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSI 272
              L  L +  N L        Q   S+ +L LS N L      + V    + SL   ++
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------THVDLSLIPSLFHANV 199

Query: 273 AHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
           ++N  S+     LA    +  L   HN I+V+       L+ L    L HN +   +   
Sbjct: 200 SYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLTDTA--W 249

Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
           L +   L  +DLS+N L  +       ++ L+ L + +N +     
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (336), Expect = 6e-33
 Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 15/243 (6%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG-----LSSLNFLDLSYNKLMT 206
            N+    P           D        +       + G     L++   +    + +  
Sbjct: 7   YNVKPRQPEYKCIDSNLQYD-CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65

Query: 207 LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSS 266
           L    L     + +L L   ++      A     ++  L +  N +   L P     +  
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPL 124

Query: 267 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326
           L VL +  N  SS+ RG      KLT+LS  +N ++ +ED +F+A ++L +L L+ NR+ 
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

Query: 327 AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNT 386
            V    L+ + +L   ++S+N L  L         +++EL    N I++    + V    
Sbjct: 185 HVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVELTI 236

Query: 387 MDL 389
           + L
Sbjct: 237 LKL 239

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (277), Expect = 2e-25
 Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 6/181 (3%)

Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG-----LRSVTDLDLSHNLLA 253
             YN      +                  + +       G     L +   +   ++ + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS 313
             L  + +     +++L++   Q   +   A A    +  L    N I  L  H F+ + 
Sbjct: 65  K-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 314 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDI 373
            L+ L L  N + ++      +   LTTL +S+N L  +  D      SLQ L+L  N +
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 374 S 374
           +
Sbjct: 184 T 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.6 bits (248), Expect = 6e-22
 Identities = 57/269 (21%), Positives = 99/269 (36%), Gaps = 29/269 (10%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           +  L  S   +  +     + L      L L +N L+      L    P L  +DLS+N+
Sbjct: 213 VEELDASHNSINVVRGPVNVEL----TILKLQHNNLTDTA--WLLNY-PGLVEVDLSYNE 265

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
           L K+    F  +  L  L +S N+L+ L+     P+ TL+VL L  N L   V       
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQF 323

Query: 240 RSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
             + +L L HN +       T+      +LK L+++HN +      AL     +   +  
Sbjct: 324 DRLENLYLDHNSI------VTLKLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVD 375

Query: 298 HNQIDVLEDHSFRALSTLSHLD----------LAHNRIVAVSGASLAHLSNLTTLDLSHN 347
                   D+           D          +A   +V     +    S   T++   +
Sbjct: 376 DADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQS 435

Query: 348 FLRALTQDLITPLKSLQELRLDDNDISME 376
               +TQ    PL+  ++L  + N++  E
Sbjct: 436 LSHYITQQGGVPLQGNEQLEAEVNELRAE 464

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           +  L VL +  N  SS+ RG      KLT+LS  +N ++ +ED +F  
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 7/48 (14%), Positives = 25/48 (52%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L++ K+++  ++    +    L    ++  L+ +  QI+ ++ ++F+ 
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 97

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
              +++L++   Q   +   A A    +  L    N I  L  H F N
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 9/48 (18%), Positives = 16/48 (33%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
             +++ L +  N    +       +  LT L    N +  L    F N
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 7/49 (14%), Positives = 18/49 (36%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
              L  LS+++N    +          L +L    N++  ++     ++
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  166 bits (422), Expect = 1e-43
 Identities = 72/280 (25%), Positives = 118/280 (42%), Gaps = 17/280 (6%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L +   EL  +SD  F   ++ L  L L +N +  +  +       NL  LDLSHN 
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNG 132

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLA--PLVTLRVLRLQGNRLTVSVVAALQ 237
           L   +  +   L +L  L LS NK+  L  + L      +L+ L L  N++         
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 238 GLRSVTDLDLSHNLLAG--PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD--KLTS 293
            +  +  L L++  L              +S++ LS++++Q S+       GL    LT 
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 294 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF----- 348
           L   +N ++V+ + SF  L  L +  L +N I  +   SL  L N+  L+L  +F     
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 349 ----LRALTQDLITPLKSLQELRLDDNDISMEPECIYVGF 384
               L  +       LK L+ L ++DNDI      ++ G 
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  165 bits (420), Expect = 3e-43
 Identities = 72/265 (27%), Positives = 132/265 (49%), Gaps = 15/265 (5%)

Query: 129 ELKNISDGAFIGLS-SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK-LENT 186
            L+ +++  F+ L+ SPL  L L  N +S + + A + L  +L+ LDL  N++ + L   
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQ 424

Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT--VSVVAALQGLRSVTD 244
            ++GL ++  + LSYNK + L+++  A + +L+ L L+   L    S  +  Q LR++T 
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA--------LAGLDKLTSLSC 296
           LDLS+N +A  +    +  L  L++L + HN  + + + A        L GL  L  L+ 
Sbjct: 485 LDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
             N  D +    F+ L  L  +DL  N +  +  +   +  +L +L+L  N + ++ + +
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 357 ITP-LKSLQELRLDDNDISMEPECI 380
             P  ++L EL +  N      E I
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCESI 628

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  160 bits (407), Expect = 1e-41
 Identities = 65/311 (20%), Positives = 128/311 (41%), Gaps = 17/311 (5%)

Query: 95  ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
             +SL +  LS  +      L+   L  L +S   L  + + +F  L   L+   L  N 
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ-LEYFFLEYNN 283

Query: 155 LSVVPTSALAP--------LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT 206
           +  + + +L          L  +  +  +S   L K+++ SF+ L  L  L++  N +  
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 207 LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ----GLRSVTDLDLSHNLLAGPLGPSTVP 262
           +  +    L+ L+ L L  +  ++  +            +  L+L+ N ++  +      
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFS 402

Query: 263 RLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
            L  L+VL +  N+    +      GL+ +  +   +N+   L  +SF  + +L  L L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 322 HNRI--VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
              +  V  S +    L NLT LDLS+N +  +  D++  L+ L+ L L  N+++   + 
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 380 IYVGFNTMDLE 390
              G     L+
Sbjct: 523 ANPGGPIYFLK 533

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  160 bits (407), Expect = 1e-41
 Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 10/254 (3%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
            +     +  L+ VP      L  N+  L+L+HNQL +L   +F   S L  LD+ +N +
Sbjct: 6   HEVADCSHLKLTQVPDD----LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
             L  +    L  L+VL LQ N L+           ++T+L L  N +   +  +   + 
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQ 120

Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL--STLSHLDLAH 322
            +L  L ++HN  SS + G    L+ L  L   +N+I  L+         S+L  L+L+ 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT---PLKSLQELRLDDNDISMEPEC 379
           N+I   S      +  L  L L++  L     + +       S++ L L ++ +S     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 380 IYVGFNTMDLELIY 393
            ++G    +L ++ 
Sbjct: 241 TFLGLKWTNLTMLD 254

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  159 bits (403), Expect = 3e-41
 Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 9/242 (3%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
            L + +  L L +N L  +P +        L  LD+  N + KLE    + L  L  L+L
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80

Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
            +N+L  LS    A    L  L L  N +           +++  LDLSHN L+      
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLG 139

Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALA--GLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
           T  +L +L+ L +++N+  +++   L       L  L    NQI       F A+  L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 318 LDLAHNRIVAVSGASLA---HLSNLTTLDLSHNFLRALTQDLITPLK--SLQELRLDDND 372
           L L + ++       L      +++  L LS++ L   +      LK  +L  L L  N+
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 373 IS 374
           ++
Sbjct: 260 LN 261

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  154 bits (390), Expect = 2e-39
 Identities = 66/323 (20%), Positives = 124/323 (38%), Gaps = 33/323 (10%)

Query: 87  SLRGLEPDERVSLLDCTLS-------NVTVLPGKFLEGVT-LHGLVISSGELKNISDGAF 138
            L        + L    L+       N+ V+       +  L    +    ++++   + 
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 139 IGLSSPLQALGLPNNL---------LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFK 189
            GL + ++ L L  +          L  +   +   L   L+ L++  N +  +++  F 
Sbjct: 293 HGLFN-VRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFT 350

Query: 190 GLSSLNFLDLSYNKL--MTLSQDCLAPLVT--LRVLRLQGNRLTVSVVAALQGLRSVTDL 245
           GL +L +L LS +     TL+ +    L    L +L L  N+++     A   L  +  L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 305
           DL  N +   L       L ++  + +++N++  + R + A +  L  L      +  ++
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 306 D--HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD-------- 355
                F+ L  L+ LDL++N I  ++   L  L  L  LDL HN L  L +         
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530

Query: 356 LITPLKSLQELRLDDNDISMEPE 378
            +  L  L  L L+ N     P 
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  131 bits (331), Expect = 5e-32
 Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 6/187 (3%)

Query: 193 SLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
           S    D S+ KL  +  D       + VL L  N+L     A       +T LD+  N +
Sbjct: 5   SHEVADCSHLKLTQVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL 312
           +  L P    +L  LKVL++ HN+ S +     A    LT L    N I  ++++ F   
Sbjct: 62  SK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT--PLKSLQELRLDD 370
             L  LDL+HN + +    +   L NL  L LS+N ++AL  + +      SL++L L  
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 371 NDISMEP 377
           N I    
Sbjct: 181 NQIKEFS 187

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (296), Expect = 1e-27
 Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
           V+  V      +LT  V   L    ++T L+L+HN L   L  +   R S L  L +  N
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59

Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
             S +       L  L  L+  HN++  L D +F   + L+ L L  N I  +       
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
             NL TLDLSHN L +        L++LQEL L +N I 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.9 bits (247), Expect = 1e-21
 Identities = 47/184 (25%), Positives = 69/184 (37%), Gaps = 13/184 (7%)

Query: 106 NVTVLPGKFLEGVT-LHGLVISSGELKNISD--GAFIGLSSPLQALGLPNNLLSVVPTSA 162
               L       V  L  L++    LKN+      F  L + L  L L NN ++ +    
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN-LTILDLSNNNIANINDDM 499

Query: 163 LAPLAPNLDRLDLSHNQLYKLEN--------TSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
           L  L   L+ LDL HN L +L             KGLS L+ L+L  N    +  +    
Sbjct: 500 LEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
           L  L+++ L  N L     +      S+  L+L  NL+         P   +L  L +  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 275 NQFS 278
           N F 
Sbjct: 619 NPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  LKVL++ HN+ S +     A    LT L    N I  ++++ F  
Sbjct: 72  LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           LS L +L++  N F  +       L +L  +    N ++ L    F+N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 7/48 (14%), Positives = 16/48 (33%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
            ++L  L +  N    ++         L +L   HN +   +  +   
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +++ VL++ HNQ   +         +LTSL    N I  LE      
Sbjct: 23  LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK 71

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
            S L  L +  N  S +       L  L  L+  HN++  L D +F+ 
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
             +L  L ++HN  SS + G    L+ L  L   +N+I  L+      
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
            ++L +L +++N  + V   + A L +L      +N I  L  HS   
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  156 bits (397), Expect = 6e-43
 Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 20/239 (8%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
            +   + ++ L     S       N+  LDLS N L ++        + L  L+LS N L
Sbjct: 12  YKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR- 263
                  L  L TLR L L  N +       L    S+  L  ++N +      S V   
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI------SRVSCS 117

Query: 264 -LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA-LSTLSHLDLA 321
                K + +A+N+ + +R        ++  L    N+ID +      A   TL HL+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
           +N I  V        + L TLDLS N L  +  +       +  + L +N + +  + +
Sbjct: 178 YNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL 233

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  150 bits (380), Expect = 1e-40
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 14/214 (6%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
                  ++ + L +   +  +   ++  LDLS N L  +S   LAP   L +L L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
           L       L+ L ++  LDL++N +        +    S++ L  A+N  S V      G
Sbjct: 70  LY--ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS-GASLAHLSNLTTLDLSH 346
                ++   +N+I +L D      S + +LDL  N I  V+     A    L  L+L +
Sbjct: 122 ---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 347 NFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
           NF+  +          L+ L L  N ++      
Sbjct: 179 NFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEF 210

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (288), Expect = 3e-28
 Identities = 51/318 (16%), Positives = 105/318 (33%), Gaps = 39/318 (12%)

Query: 83  AISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGL 141
           AI E  +      R  +   T S++        +    +  L +S   L  IS       
Sbjct: 1   AIHEIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 142 SSPLQALGLPNNLLSVVPT-----------------SALAPLAPNLDRLDLSHNQLYKLE 184
           +  L+ L L +N+L                        L    P+++ L  ++N + ++ 
Sbjct: 58  TK-LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-PSIETLHAANNNISRVS 115

Query: 185 NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVT 243
            +  +G  +   + L+ NK+  L          ++ L L+ N +  V+         ++ 
Sbjct: 116 CSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 244 DLDLSHNLLAGPLGPSTVPR---LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
            L+L +N +        V      + LK L ++ N+ + +          +T +S  +N+
Sbjct: 173 HLNLQYNFI------YDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNK 225

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
           + ++E  + R    L H DL  N     +        N     ++   ++ LT       
Sbjct: 226 LVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 361 KSLQELRLDDNDISMEPE 378
                           P 
Sbjct: 284 TVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 9/217 (4%)

Query: 106 NVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAP 165
           N++ +     +G     + +++ ++  + D      S  +Q L L  N +  V  + LA 
Sbjct: 110 NISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAA 166

Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
            +  L+ L+L +N +Y ++       + L  LDLS NKL  +          +  + L+ 
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRN 223

Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
           N+L   +  AL+  +++   DL  N      G        + +V ++A      +     
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH--CGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
                 T         + L       L  L H    H
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 3/48 (6%), Positives = 11/48 (22%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
            +  K+  +  +               +  L    N +  +     + 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (413), Expect = 8e-43
 Identities = 58/272 (21%), Positives = 103/272 (37%), Gaps = 6/272 (2%)

Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP-LQALGLPNNLLSVVPTSALAPL 166
             +     +      L     +   +        +   L      +     +  +    L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 167 -APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
              +++ ++L  +  + + + +F   S L  LDL+   L  L    L  L TL+ L L  
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSA 310

Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQ--FSSVRRG 283
           N+       +     S+T L +  N     LG   +  L +L+ L ++H+    S     
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV-SGASLAHLSNLTTL 342
            L  L  L SL+  +N+   L+  +F+    L  LDLA  R+    + +   +L  L  L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 343 DLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           +LSH+ L   ++ L   L +LQ L L  N   
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  160 bits (408), Expect = 4e-42
 Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 10/265 (3%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L +++  L  +  G  +GLS+ L+ L L  N    +   + +   P+L  L +  N 
Sbjct: 280 LQELDLTATHLSELPSG-LVGLST-LKKLVLSANKFENLCQISASNF-PSLTHLSIKGNT 336

Query: 180 LY-KLENTSFKGLSSLNFLDLSYNKLMTL--SQDCLAPLVTLRVLRLQGNRLTVSVVAAL 236
              +L     + L +L  LDLS++ + T       L  L  L+ L L  N        A 
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC 296
           +    +  LDL+   L      S    L  LKVL+++H+           GL  L  L+ 
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 297 HHNQI---DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353
             N     ++ + +S + L  L  L L+   + ++   +   L  +  +DLSHN L + +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 354 QDLITPLKSLQELRLDDNDISMEPE 378
            + ++ LK +  L L  N IS+   
Sbjct: 517 IEALSHLKGIY-LNLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (398), Expect = 8e-41
 Identities = 54/282 (19%), Positives = 94/282 (33%), Gaps = 31/282 (10%)

Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
           L ++  ++  I +  F      L  L L  N L  +  +AL+     L  L      +  
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHR-LDTLVLTANPLIFMAETALSGP-KALKHLFFIQTGISS 119

Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRS- 241
           ++        +L  L L  N + ++      P   L+VL  Q N +       +  L+  
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 242 -VTDLDLSHNLLAG------------------------PLGPSTVPRLSSLKVLSIAHNQ 276
               L+L+ N +AG                                 + SL + +     
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 277 FSSVRRGALAGLDK--LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
              +      GL +  + S++   +    +  ++F   S L  LDL    +  +  + L 
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLV 298

Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
            LS L  L LS N    L Q   +   SL  L +  N   +E
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (385), Expect = 4e-39
 Identities = 60/273 (21%), Positives = 106/273 (38%), Gaps = 9/273 (3%)

Query: 114 FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL 173
            L+  T   L ++  ++  I  GAF          G   NLL +      + +  +L   
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI-QSLWLG 233

Query: 174 DLSHNQLYKLENTSFKGLSSLN--FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
                    +    F+GL  ++   ++L  +    +S +       L+ L L    L+  
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292

Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN-QFSSVRRGALAGLDK 290
           + + L GL ++  L LS N     L   +     SL  LSI  N +   +  G L  L+ 
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 291 LTSLSCHHNQIDVLE--DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
           L  L   H+ I+  +  +   R LS L  L+L++N  +++   +      L  LDL+   
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 349 LRALT-QDLITPLKSLQELRLDDNDISMEPECI 380
           L+    Q     L  L+ L L  + + +  E +
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (385), Expect = 5e-39
 Identities = 45/241 (18%), Positives = 95/241 (39%), Gaps = 9/241 (3%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
            L +  + L    N+L  +  +  + L  NL  LDL+  Q+Y +   +F+    L+ L L
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
           + N L+ +++  L+    L+ L      ++      L   +++  L L  N ++  +   
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLP 147

Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH--HNQIDVLEDHSFRALSTLSH 317
                  LKVL   +N    + +  ++ L + T+LS +   N I  +E  +F   +    
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQS 206

Query: 318 LDLAHNRI--VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK--SLQELRLDDNDI 373
           L+    +   V   G   + + +L            ++  +   L   S++ + L  +  
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 374 S 374
            
Sbjct: 267 F 267

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  150 bits (382), Expect = 1e-38
 Identities = 54/303 (17%), Positives = 104/303 (34%), Gaps = 32/303 (10%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  LV+++  L  +++ A  G  + L+ L      +S +    L      L+ L L  N 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSNH 140

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL------------------------ 215
           +  ++         L  LD   N +  LS++ ++ L                        
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 216 -VTLRVLRLQGNRLTVSVVAALQG--LRSVTDLDLSHNLLAG-PLGPSTVPRLSSLKVLS 271
               + L   G +  + +   L+   ++S+                        S++ ++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
           +  + F ++          L  L      +  L       LSTL  L L+ N+   +   
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQI 319

Query: 332 SLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE 390
           S ++  +LT L +  N  R  L    +  L++L+EL L  +DI     C     N   L+
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 391 LIY 393
            + 
Sbjct: 380 SLN 382

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  148 bits (375), Expect = 8e-38
 Identities = 61/268 (22%), Positives = 110/268 (41%), Gaps = 28/268 (10%)

Query: 132 NISDGAFIGLSSPLQALGLPNNLLSVVPTS--ALAPLAPNLDRLDLSHNQLYKLENTSFK 189
            +  G    L + L+ L L ++ +         L  L  +L  L+LS+N+   L+  +FK
Sbjct: 340 ELGTGCLENLEN-LRELDLSHDDIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFK 397

Query: 190 GLSSLNFLDLSYNKLMTL-SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLS 248
               L  LDL++ +L    +Q     L  L+VL L  + L +S      GL ++  L+L 
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 249 HNLLAG--PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 306
            N          +++  L  L++L ++    SS+ + A   L  +  +   HN++     
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 307 HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN----------FLRALTQDL 356
            +   L  + +L+LA N I  +  + L  LS   T++L  N          FL    +++
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENM 576

Query: 357 ITP----------LKSLQELRLDDNDIS 374
                           L+ +RL D  +S
Sbjct: 577 QKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  147 bits (374), Expect = 1e-37
 Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 10/246 (4%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           N  L+ +P +    L  + + L+ S N L  ++NT+F  L +L FLDL+  ++  + +D 
Sbjct: 21  NLGLNEIPGT----LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
                 L  L L  N L      AL G +++  L      ++  +    +    +L+ L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLY 135

Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH--LDLAHNRIVAVS 329
           +  N  SS++       +KL  L   +N I  L      +L   ++  L+L  N I  + 
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 330 GASLAHLSNLTTLDLSHNFLRALTQDLI--TPLKSLQELRLDDNDISMEPECIYVGFNTM 387
                  +   +L+        +    +  + ++SL     +D D       ++ G   M
Sbjct: 196 -PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 388 DLELIY 393
            +E I 
Sbjct: 255 SVESIN 260

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (307), Expect = 4e-29
 Identities = 37/200 (18%), Positives = 64/200 (32%), Gaps = 6/200 (3%)

Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL 256
            +     L  +         +   L    N L          L ++T LDL+   +   +
Sbjct: 17  YNCENLGLNEIPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-I 72

Query: 257 GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
              T      L  L +  N    +   AL+G   L  L      I  ++        TL 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD--DNDIS 374
            L L  N I ++          L  LD  +N +  L+++ ++ L+    L L+   NDI+
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 375 MEPECIYVGFNTMDLELIYS 394
                 +       L    +
Sbjct: 193 GIEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (283), Expect = 4e-26
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 4/156 (2%)

Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
           +    +   L   +   L    S   L+ S N+L   +  +T  RL +L  L +   Q  
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIY 70

Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
            +         +L +L    N +  + + +      L HL      I ++    L +   
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           L +L L  N + ++      P + L+ L   +N I 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 10/151 (6%)

Query: 104 LSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSA 162
                +     L+ +  L  LV+S  +L +I   AF  L   +  + L +N L+     A
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTSSSIEA 519

Query: 163 LAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC-LAPLVTLRVL 221
           L+ L      L+L+ N +  +  +    LS    ++L  N    L   C       L   
Sbjct: 520 LSHL--KGIYLNLASNHISIILPSLLPILSQQRTINLRQNP---LDCTCSNIYF--LEWY 572

Query: 222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
           +    +L  +     +    +  + LS   L
Sbjct: 573 KENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 11/48 (22%), Positives = 15/48 (31%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
             +LK L       SS+    L     L SL    N I  ++      
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +S + L  + N   +++    + L  LT L     QI  + + +F +
Sbjct: 31  LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 10/48 (20%), Positives = 15/48 (31%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
              L  L +  N    +   AL+G   L  L      I  ++     N
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L++L ++    SS+ + A   L  +  +   HN++      + S+
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 8/48 (16%), Positives = 17/48 (35%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +L  L +   Q   +         +L +L    N +  + + + S 
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
             +L+ L +  N  SS++       +KL  L   +N I  L     S+
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  157 bits (399), Expect = 8e-43
 Identities = 59/248 (23%), Positives = 97/248 (39%), Gaps = 11/248 (4%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
           GL+  +++L L NN ++ +  S L     NL  L L+ N +  +E  SF  L SL  LDL
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLGP 258
           SYN L  LS     PL +L  L L GN    +   +    L  +  L + +      +  
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
                L+ L+ L I  +   S    +L  +  ++ L  H  Q  +L +      S++  L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 319 DLAHNR--------IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
           +L            +      SL        + ++   L  +   L+  +  L EL    
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSR 286

Query: 371 NDISMEPE 378
           N +   P+
Sbjct: 287 NQLKSVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 4e-16
 Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
           PS +    ++K L +++N+ + +    L     L +L    N I+ +E+ SF +L +L H
Sbjct: 47  PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104

Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI-TPLKSLQELRLDDND 372
           LDL++N +  +S +    LS+LT L+L  N  + L +  + + L  LQ LR+ + D
Sbjct: 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 6e-15
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 3/128 (2%)

Query: 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
           L                 +   +    +S+  G    +    SL   +N+I  + +   +
Sbjct: 17  LSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAV---KSLDLSNNRITYISNSDLQ 73

Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
               L  L L  N I  +   S + L +L  LDLS+N+L  L+     PL SL  L L  
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 371 NDISMEPE 378
           N      E
Sbjct: 134 NPYKTLGE 141

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 9/129 (6%)

Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA 167
           +  P        +  L++   +   + +      SS ++ L L +  L     S L+   
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS-VECLELRDTDLDTFHFSELSTGE 246

Query: 168 -------PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV 220
                       + ++   L+++       +S L  L+ S N+L ++       L +L+ 
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 221 LRLQGNRLT 229
           + L  N   
Sbjct: 306 IWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L+ L+ L I  +   S    +L  +  ++ L  H  Q  +L +     
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 98  SLLDCTLSNVTVLPGKFLEGVT------LHGLVISSGELKNISDGAFIGLS--SPLQALG 149
           S L   +    +L   F++  +      L    + +     +S G    L      + + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 150 LPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           + +  L  V    L      L  L+ S NQL  + +  F  L+SL  + L  N  
Sbjct: 261 ITDESLFQVM--KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  ++K L +++N+ + +    L     L +L    N I+ +E+ SFS+
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 689
           L SL+ L +++N  S++       L  LT L+   N    L + S 
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  161 bits (410), Expect = 1e-41
 Identities = 68/300 (22%), Positives = 128/300 (42%), Gaps = 24/300 (8%)

Query: 91  LEPDERVSLLDCTLSNVTVLPGKFLEG---VTLHGLVISSGELKNISDGAFIGLSSPLQA 147
           L     +        N+         G    ++  L +S G + +++   F  L   L+ 
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD-LKV 294

Query: 148 LGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL 207
           L L  N ++ +   A   L  NL  L+LS+N L +L +++F GL  + ++DL  N +  +
Sbjct: 295 LNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 208 SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS-S 266
                  L  L+ L L+ N LT      +  + S+ D+ LS N L       T+P+++ +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL------VTLPKINLT 402

Query: 267 LKVLSIAHNQFSSVRRGA-LAGLDKLTSLSCHHNQIDVLE-DHSFRALSTLSHLDLAHNR 324
             ++ ++ N+  ++     L  +  L  L  + N+      D +     +L  L L  N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 325 IVAVSGASL-----AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
           +       L       LS+L  L L+HN+L +L   + + L +L+ L L+ N +++    
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  152 bits (386), Expect = 1e-38
 Identities = 71/292 (24%), Positives = 109/292 (37%), Gaps = 26/292 (8%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLS--VVPTSALAPLAPNLDRLDLSH 177
           L  L + S ++  +   AF GL   L  L L    LS  V+       L   L RLDLS 
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFH-LFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSK 132

Query: 178 NQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL--VTLRVLRLQGNRLTVSVVA 234
           NQ+  L  + SF  L+SL  +D S N++  + +  L PL   TL    L  N L   V  
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 235 ALQGL------RSVTDLDLSHNLLAGP-----------LGPSTVPRLSSLKVLSIAHNQF 277
                        +  LD+S N                    ++     +       +  
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 278 SSVRRGALAGLDK--LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
               +   AGL +  +  L   H  +  L    F  L  L  L+LA+N+I  ++  +   
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312

Query: 336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTM 387
           L NL  L+LS+N L  L       L  +  + L  N I++  +  +     +
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  143 bits (362), Expect = 1e-35
 Identities = 64/303 (21%), Positives = 116/303 (38%), Gaps = 27/303 (8%)

Query: 100 LDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKN--ISDGAFIGLSSPLQALGLPNNLLS 156
           LD   S +  L     +G+  L  L +    L +  + DG F  L + L  L L  N + 
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA-LTRLDLSKNQIR 136

Query: 157 VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLS--SLNFLDLSYNKLMTLSQDCLAP 214
            +          +L  +D S NQ++ +     + L   +L+F  L+ N L +        
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 215 L------VTLRVLRLQGNRLTVSVVAA------------LQGLRSVTDLDLSHNLLAGPL 256
                  + L +L + GN  TV +               L     +       + +    
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD-P 255

Query: 257 GPSTVPRL--SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
             +T   L  SS++ L ++H    S+       L  L  L+  +N+I+ + D +F  L  
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           L  L+L++N +  +  ++   L  +  +DL  N +  +       L+ LQ L L DN ++
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

Query: 375 MEP 377
              
Sbjct: 376 TIH 378

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  133 bits (337), Expect = 2e-32
 Identities = 56/265 (21%), Positives = 95/265 (35%), Gaps = 28/265 (10%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL-MTLSQD 210
              L+ VP      +    +RL LS N +  +  +SF  L  L  L+L      +T+ ++
Sbjct: 13  FCNLTQVP-----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 211 CLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA-GPLGPSTVPRLSSLKV 269
               L  LR+L L  +++      A QGL  + +L L    L+   L       L +L  
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 270 LSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALS--TLSHLDLAHNRIV 326
           L ++ NQ  S+    +   L+ L S+    NQI ++ +H    L   TLS   LA N + 
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 327 AVSGASLAHLSN------LTTLDLSHNFLRALTQDL------------ITPLKSLQELRL 368
           +          N      L  LD+S N                     +     +     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 369 DDNDISMEPECIYVGFNTMDLELIY 393
             ++I    +  + G     +  + 
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLD 272

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  129 bits (326), Expect = 3e-31
 Identities = 55/285 (19%), Positives = 110/285 (38%), Gaps = 30/285 (10%)

Query: 110 LPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP-LQALGL-PNNLLSVVPTSALAPLA 167
           L   F +  +L  +  SS ++  + +     L    L    L  N+L S V       + 
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 168 P----NLDRLDLSHNQLY------------KLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           P     L+ LD+S N               K +  S      +      ++ +    Q+ 
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 212 LAPLV--TLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
            A L   ++R L L    +        + L+ +  L+L++N +   +       L +L+V
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQV 318

Query: 270 LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS 329
           L++++N    +      GL K+  +    N I +++D +F+ L  L  LDL  N +    
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT--- 375

Query: 330 GASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
             ++  + ++  + LS N L  L +  +    +   + L +N + 
Sbjct: 376 --TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLE 414

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (291), Expect = 6e-27
 Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 30/284 (10%)

Query: 85  SESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP 144
           S     L+  + ++L    ++ +      F     L  L +S   L  +    F GL   
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIA--DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK- 339

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSF---------------K 189
           +  + L  N ++++       L   L  LDL  N L  +                    K
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398

Query: 190 GLSSLNFLDLSYNKLMTLSQDC-LAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDL 247
              + N + LS N+L  L     L  +  L++L L  NR +  S         S+  L L
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 248 SHNLLAGP----LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
             N+L       L       LS L+VL + HN  +S+  G  + L  L  LS + N++ V
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518

Query: 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           L  +     + L  LD++ N+++A    +     +L+ LD++HN
Sbjct: 519 LSHNDL--PANLEILDISRNQLLAP---NPDVFVSLSVLDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (291), Expect = 7e-27
 Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 33/211 (15%)

Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
                  L ++     + L++   L LS+N + T++      L  L++L           
Sbjct: 9   AFYRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLL----------- 53

Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
                        +L        +       L +L++L +  ++   +   A  GL  L 
Sbjct: 54  -------------ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100

Query: 293 SLSCHHNQI--DVLEDHSFRALSTLSHLDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFL 349
            L  +   +   VL+D  FR L  L+ LDL+ N+I ++    S   L++L ++D S N +
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 350 RALTQDLITPL--KSLQELRLDDNDISMEPE 378
             + +  + PL  K+L    L  N +     
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 15/234 (6%)

Query: 95  ERVSLLDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
             + L +  L N+      FL  V  L  L+++     + S       +  L+ L L  N
Sbjct: 404 NLIHLSENRLENLD--ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 154 LLSVVPTSALAPLA----PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ 209
           +L +   + L         +L  L L+HN L  L    F  L++L  L L+ N+L  LS 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

Query: 210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
           + L     L +L +  N+L          L  +   D++HN        ST     +   
Sbjct: 522 NDLPAN--LEILDISRNQLLAPNPDVFVSLSVL---DITHNKFICECELSTFINWLNHTN 576

Query: 270 LSIAHN--QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
           ++IA        V   + +G+  L SLS      + +      +L  +  + L 
Sbjct: 577 VTIAGPPADIYCVYPDSFSGV-SLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLT 629

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  LKVL++A+N+ + +   A  GLD L  L+  +N +  L   +F  
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +L+VL++++N    +      GL K+  +    N I +++D +F  
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  158 bits (401), Expect = 3e-41
 Identities = 72/297 (24%), Positives = 106/297 (35%), Gaps = 13/297 (4%)

Query: 87  SLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQ 146
            + GL             ++ +    KF     +  + ++   +K + D          Q
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK---HFKWQ 310

Query: 147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT 206
           +L +    L   PT  L    P L  L L+ N+     +     L SL++LDLS N L  
Sbjct: 311 SLSIIRCQLKQFPTLDL----PFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSF 364

Query: 207 LSQDCLAPLVT--LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
                 + L T  LR L L  N     + A   GL  +  LD  H+ L      S    L
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHN 323
             L  L I++        G   GL  L +L    N   D    + F   + L+ LDL+  
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
           ++  +S      L  L  L++SHN L  L       L SL  L    N I      +
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  151 bits (384), Expect = 5e-39
 Identities = 71/263 (26%), Positives = 108/263 (41%), Gaps = 13/263 (4%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
              L I   +LK       + L   L++L L  N  S+       P   +L  LDLS N 
Sbjct: 309 WQSLSIIRCQLKQFP---TLDLPF-LKSLTLTMNKGSISFKKVALP---SLSYLDLSRNA 361

Query: 180 LYKLENTSFK--GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAAL 236
           L      S+   G +SL  LDLS+N  + +S +    L  L+ L  Q + L  V+  +A 
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLS 295
             L  +  LD+S+              L+SL  L +A N F         A    LT L 
Sbjct: 421 LSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 296 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
               Q++ +    F  L  L  L+++HN ++ +  +    L +L+TLD S N +      
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

Query: 356 LITPLKSLQELRLDDNDISMEPE 378
           L    KSL    L +N ++   E
Sbjct: 540 LQHFPKSLAFFNLTNNSVACICE 562

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  146 bits (370), Expect = 4e-37
 Identities = 61/255 (23%), Positives = 98/255 (38%), Gaps = 11/255 (4%)

Query: 95  ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
           + +S++ C L     L   FL+ +TL     S            + L S L  L L  N 
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI-------SFKKVALPS-LSYLDLSRNA 361

Query: 155 LSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCL 212
           LS     + + L   +L  LDLS N    +    F GL  L  LD  ++ L  ++     
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 213 APLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSI 272
             L  L  L +      +       GL S+  L ++ N        +     ++L  L +
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 273 AHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
           +  Q   +  G    L +L  L+  HN +  L+   +  L +LS LD + NRI    G  
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 333 LAHLSNLTTLDLSHN 347
                +L   +L++N
Sbjct: 541 QHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (369), Expect = 5e-37
 Identities = 47/243 (19%), Positives = 98/243 (40%), Gaps = 13/243 (5%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
            + S  + + L  N L ++ + + +     L  LDLS  ++  +E+ ++ GL  L+ L L
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
           + N + + S    + L +L  L     +L       +  L ++  L+++HN +     P+
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFRALSTL 315
               L++L  + +++N   ++    L  L +      SL    N ID ++D +F+ +  L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-L 206

Query: 316 SHLDLAHNRIVA-VSGASLAHLSNLTTLDLSHNFLR------ALTQDLITPLKSLQELRL 368
             L L  N   + +    L +L+ L    L     +           ++  L  +     
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 369 DDN 371
              
Sbjct: 267 RLT 269

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  135 bits (341), Expect = 2e-33
 Identities = 57/291 (19%), Positives = 100/291 (34%), Gaps = 43/291 (14%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L +S  E++ I D A+ GL   L  L L  N +      + + L  +L+ L     +
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHH-LSNLILTGNPIQSFSPGSFSGL-TSLENLVAVETK 115

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQGNRLTVSVVAALQG 238
           L  LE+     L +L  L++++N + +       + L  L  + L  N +    V  LQ 
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 239 LR---------------------------SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
           LR                            + +L L  N  +  +  + +  L+ L V  
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 272 IAHNQFSSVRR------GALAGLDKLT--SLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
           +   +F   R         + GL  +T       +      +   F  L+ +S + LA  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
            I  +    +       +L +    L+         L  L+ L L  N  S
Sbjct: 296 SIKYLE--DVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGS 341

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (322), Expect = 5e-31
 Identities = 53/276 (19%), Positives = 92/276 (33%), Gaps = 21/276 (7%)

Query: 130 LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFK 189
           L ++       L + L+ L + +N +      A      NL  +DLS+N +  +     +
Sbjct: 116 LASLESFPIGQLIT-LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 190 GLSSLNF----LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA-ALQGLRSVTD 244
            L         LD+S N +  +       +  L  L L+GN  + +++   LQ L  +  
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 245 LDLSHNLLAGP-----LGPSTVPRLSSLKV--LSIAHNQFSSVRRGALAGLDKLTSLSCH 297
             L               PS +  L  + +    + +    S        L  ++++S  
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 298 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI 357
              I  LED           L +   ++       L     L +L L+ N      +   
Sbjct: 294 GVSIKYLEDVPK--HFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGSISFK--K 346

Query: 358 TPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIY 393
             L SL  L L  N +S    C Y    T  L  + 
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  126 bits (319), Expect = 1e-30
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 10/207 (4%)

Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
                 +L K+ +      SS   +DLS+N L  L     +    L+ L L    +    
Sbjct: 16  YQCMDQKLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
             A  GL  +++L L+ N +     P +   L+SL+ L     + +S+    +  L  L 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 293 SLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT----TLDLSHN 347
            L+  HN I   +    F  L+ L H+DL++N I  ++   L  L        +LD+S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 348 FLRALTQDLITPLKSLQELRLDDNDIS 374
            +  +       +  L EL L  N  S
Sbjct: 192 PIDFIQDQAFQGI-KLHELTLRGNFNS 217

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  123 bits (310), Expect = 2e-29
 Identities = 57/276 (20%), Positives = 91/276 (32%), Gaps = 22/276 (7%)

Query: 119 TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178
               L +S   +  I D AF G+   L  L L  N  S             L    L   
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQGIK--LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 179 ------QLYKLENTSFKGLSSLNF--LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
                  L   E +  +GL  +      L+Y    +        L  +  + L G  +  
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
             +  +        L +    L           L  LK L++  N+ S         L  
Sbjct: 300 --LEDVPKHFKWQSLSIIRCQLKQFPTLD----LPFLKSLTLTMNKGSIS--FKKVALPS 351

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLS--HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
           L+ L    N +      S+  L T S  HLDL+ N  + +S      L  L  LD  H+ 
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHST 410

Query: 349 LRALT-QDLITPLKSLQELRLDDNDISMEPECIYVG 383
           L+ +T       L+ L  L +   +  ++ + I++G
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.2 bits (232), Expect = 5e-20
 Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 1/142 (0%)

Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
              FL    L  L IS    K   DG F+GL+S L  L +  N       S +     NL
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
             LDLS  QL ++    F  L  L  L++S+N L+ L       L +L  L    NR+  
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 231 SVVAALQGLRSVTDLDLSHNLL 252
           S        +S+   +L++N +
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST 314
           P   +    +           + S V     +      ++    N + +L+ +SF   S 
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           L  LDL+   I  +   +   L +L+ L L+ N +++ +    + L SL+ L   +  ++
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 375 MEPE 378
               
Sbjct: 118 SLES 121

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L  L +  N   S   G+ +GL  L +L     ++  LE      
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
            S L+ L ++  +  ++   A  GL  L++L    N I      SFS 
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 9/49 (18%), Positives = 23/49 (46%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           + SS K + ++ N    ++  + +   +L  L     +I+ +ED ++  
Sbjct: 30  IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L++L+++HN    +       L  L++L C  N+I+  +      
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  155 bits (393), Expect = 7e-41
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 20/239 (8%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
            +   + ++ L     S       N+  LDLS N L ++        + L  L+LS N L
Sbjct: 12  YKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-- 262
                  L  L TLR L L  N +       L    S+  L  ++N +      S V   
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI------SRVSCS 117

Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA-LSTLSHLDLA 321
           R    K + +A+N+ + +R        ++  L    N+ID +      A   TL HL+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
           +N I  V        + L TLDLS N L  +  +       +  + L +N + +  + +
Sbjct: 178 YNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL 233

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  149 bits (379), Expect = 4e-39
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 14/219 (6%)

Query: 163 LAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLR 222
           +           ++ + L +   +  +   ++  LDLS N L  +S   LAP   L +L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 223 LQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR 282
           L  N L       L+ L ++  LDL++N +        +    S++ L  A+N  S V  
Sbjct: 65  LSSNVLY--ETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVSC 116

Query: 283 GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS-GASLAHLSNLTT 341
               G     ++   +N+I +L D      S + +LDL  N I  V+     A    L  
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 342 LDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
           L+L +NF+  +   +      L+ L L  N ++      
Sbjct: 174 LNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPEF 210

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  127 bits (320), Expect = 3e-31
 Identities = 39/274 (14%), Positives = 89/274 (32%), Gaps = 15/274 (5%)

Query: 106 NVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAP 165
           N++ +     +G     + +++ ++  + D      S  +Q L L  N +  V  + LA 
Sbjct: 110 NISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAA 166

Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
            +  L+ L+L +N +Y ++       + L  LDLS NKL  +          +  + L+ 
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRN 223

Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
           N+L   +  AL+  +++   DL  N            +   ++ ++        +     
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNE 280

Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRAL-----STLSHLDLAHNRIVAVSGASLAHLSNLT 340
                 T         + L       L        + L    +    +      + +   
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE-CERENQARQR 339

Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
            +D      R +   +    ++   L      + 
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (300), Expect = 1e-28
 Identities = 35/269 (13%), Positives = 83/269 (30%), Gaps = 18/269 (6%)

Query: 116 EGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL 175
            G ++  L  ++  +  +S     G     + + L NN ++++           +  LDL
Sbjct: 97  VGPSIETLHAANNNISRVSCSRGQGK----KNIYLANNKITMLRDLDEGCR-SRVQYLDL 151

Query: 176 SHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA 234
             N++  +          +L  L+L YN +  +          L+ L L  N+L   +  
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLA-FMGP 208

Query: 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTS 293
             Q    VT + L +N L        +    +L+   +  N F     R   +   ++ +
Sbjct: 209 EFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 294 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353
           ++     +  L   +    +  +           +       L  L   + +    +   
Sbjct: 267 VAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 354 QDLITP----LKSLQELRLDDNDISMEPE 378
            + +          +E+           +
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVID 353

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.5 bits (196), Expect = 9e-16
 Identities = 32/260 (12%), Positives = 75/260 (28%), Gaps = 12/260 (4%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L +SS +L  +    F   +  +  + L NN L ++   AL     NL+  DL  N 
Sbjct: 193 LKTLDLSSNKLAFMGP-EFQSAAG-VTWISLRNNKLVLIE-KALRFS-QNLEHFDLRGNG 248

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
            +      F    +     ++   +  L+           +                  L
Sbjct: 249 FHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 240 RSVTDLDLSHNLLAG---PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC 296
            ++   + +     G             +  + +     Q+ +V            +L  
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS--LAHLSNLTTLDLSHNFLRALTQ 354
               +D    +  RA + L          + +  A+   + L  L  +   +  +    Q
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427

Query: 355 DLITPLKSLQELRLDDNDIS 374
                  ++++  +  +  +
Sbjct: 428 --SVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 3/49 (6%), Positives = 11/49 (22%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
             +  K+  +  +               +  L    N +  +     + 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  150 bits (381), Expect = 9e-39
 Identities = 66/265 (24%), Positives = 105/265 (39%), Gaps = 13/265 (4%)

Query: 110 LPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPN 169
           +   F     +    + S  ++ + D ++   +   Q L L N      PT  L     +
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKL----KS 326

Query: 170 LDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL--MTLSQDCLAPLVTLRVLRLQGNR 227
           L RL  + N+       S   L SL FLDLS N L              +L+ L L  N 
Sbjct: 327 LKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
           +  ++ +   GL  +  LD  H+ L      S    L +L  L I+H        G   G
Sbjct: 385 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 288 LDKLTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
           L  L  L    N   +      F  L  L+ LDL+  ++  +S  +   LS+L  L+++ 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 347 NFLRALTQDLITPLKSLQELRLDDN 371
           N L+++   +   L SLQ++ L  N
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (370), Expect = 2e-37
 Identities = 54/260 (20%), Positives = 109/260 (41%), Gaps = 13/260 (5%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
            L    + L L  N L  + + +     P L  LDLS  ++  +E+ +++ LS L+ L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
           + N + +L+    + L +L+ L      L       +  L+++ +L+++HNL+     P 
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFRALSTL 315
               L++L+ L ++ N+  S+    L  L ++     SL    N ++ ++  +F+ +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-L 202

Query: 316 SHLDLAHNRI-VAVSGASLAHLSNLTTLDL------SHNFLRALTQDLITPLKSLQELRL 368
             L L +N   + V    +  L+ L    L      +   L    +  +  L +L     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 369 DDNDISMEPECIYVGFNTMD 388
               +    + I   FN + 
Sbjct: 263 RLAYLDYYLDDIIDLFNCLT 282

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  134 bits (338), Expect = 3e-33
 Identities = 61/269 (22%), Positives = 100/269 (37%), Gaps = 7/269 (2%)

Query: 60  KNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDC-TLSNVTVLPGKFLEGV 118
             D    D+     C  N S    +S ++  ++            L N        L+  
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 119 TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA-PNLDRLDLSH 177
           +L  L  +S +  N    + + L S L+ L L  N LS     + +     +L  LDLS 
Sbjct: 326 SLKRLTFTSNKGGNA--FSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQGNRLTVSVVAAL 236
           N +  + +++F GL  L  LD  ++ L  +S       L  L  L +      V+     
Sbjct: 383 NGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC 296
            GL S+  L ++ N       P     L +L  L ++  Q   +   A   L  L  L+ 
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
             NQ+  + D  F  L++L  + L  N  
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (323), Expect = 3e-31
 Identities = 73/327 (22%), Positives = 112/327 (34%), Gaps = 22/327 (6%)

Query: 70  HTLRCTANKSDLYAISESLRGLEPDERVSLLDCTL---SNVTVLPGKFLEG---VTLHGL 123
           H L    N   L  +   ++GL   E   L+        N+       LEG   +T+   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 124 VISSGEL-KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
            ++  +   +     F  L++ + +  L +  +  V   +      +L+ ++    Q   
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF-- 319

Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV--AALQGLR 240
                   L SL  L  + NK           L +L  L L  N L+       +  G  
Sbjct: 320 ----PTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHN 299
           S+  LDLS N +      S    L  L+ L   H+    +        L  L  L   H 
Sbjct: 374 SLKYLDLSFNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVA-VSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
              V  +  F  LS+L  L +A N             L NLT LDLS   L  L+     
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 359 PLKSLQELRLDDNDISMEPECIYVGFN 385
            L SLQ L +  N +   P+ I+    
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLT 518

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  121 bits (305), Expect = 5e-29
 Identities = 69/307 (22%), Positives = 117/307 (38%), Gaps = 38/307 (12%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L+++   +++++ GAF GLSS LQ L      L+ +    +  L   L  L+++HN 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHL-KTLKELNVAHNL 135

Query: 180 LYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV----LRLQGNRLTVSVVA 234
           +   +    F  L++L  LDLS NK+ ++    L  L  + +    L L  N +      
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA------HNQFSSVRRGALAGL 288
           A + +  +  L L +N  +  +  + +  L+ L+V  +               + AL GL
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 289 DKLTSLSCHHNQIDVLED---HSFRALSTLSHLDLAHNRIVAVSGASLAH---------- 335
             LT        +D   D     F  L+ +S   L    I  V   S             
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 336 ---------LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNT 386
                    L +L  L  + N       ++   L SL+ L L  N +S +  C    F T
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 387 MDLELIY 393
             L+ + 
Sbjct: 373 TSLKYLD 379

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.2 bits (232), Expect = 5e-20
 Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 6/177 (3%)

Query: 104 LSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP-TSA 162
           LS             +L  L +S   +  +S   F+GL   L+ L   ++ L  +   S 
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ-LEHLDFQHSNLKQMSEFSV 416

Query: 163 LAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM-TLSQDCLAPLVTLRVL 221
              L  NL  LD+SH       N  F GLSSL  L ++ N        D    L  L  L
Sbjct: 417 FLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
            L   +L      A   L S+  L+++ N L   +      RL+SL+ + +  N + 
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  S K L ++ N    +   +     +L  L     +I  +ED ++ +
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
              L+VL ++  +  ++  GA   L  L++L    N I  L   +FS 
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           LS L  L +  N   S+  GA +GL  L  L      +  LE+    +
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +L  L ++  Q   +   A   L  L  L+   NQ+  + D  F  
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (379), Expect = 1e-38
 Identities = 51/252 (20%), Positives = 105/252 (41%), Gaps = 18/252 (7%)

Query: 125 ISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE 184
            +  E   +S+   +   + ++ L +P   L    ++  + L   + R+ + +++++ + 
Sbjct: 269 FNPSESDVVSELGKVETVT-IRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVFLVP 326

Query: 185 NTSFKGLSSLNFLDLSYNKLMTL---SQDCLAPLVTLRVLRLQGNRLTV--SVVAALQGL 239
            +  + L SL FLDLS N ++     +  C     +L+ L L  N L         L  L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
           +++T LD+S N       P +      ++ L+++      V+         L  L   +N
Sbjct: 387 KNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNN 441

Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
            +D         L  L  L ++ N++  +  A  +    L  + +S N L+++   +   
Sbjct: 442 NLDSFSLF----LPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDR 495

Query: 360 LKSLQELRLDDN 371
           L SLQ++ L  N
Sbjct: 496 LTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  148 bits (375), Expect = 4e-38
 Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 5/224 (2%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           +   + +P+     L   +  LDLS N++  + +   +  ++L  L L  +++ T+  D 
Sbjct: 14  SRSFTSIPSG----LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
              L +L  L L  N L+    +    L S+  L+L  N        S  P L++L+ L 
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 272 IAH-NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 330
           I +   FS +RR   AGL  L  L      +   +  S +++  + HL L  +    +  
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
                LS++  L+L    L       +   +    ++      S
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (356), Expect = 1e-35
 Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 2/238 (0%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
           GL++ +++L L  N ++ +    L     NL  L L  +++  +E  +F  L SL  LDL
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLGP 258
           S N L +LS     PL +L+ L L GN    + V +    L ++  L + +      +  
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
                L+SL  L I      + +  +L  +  +  L+ H ++   L +     LS++ +L
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 319 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
           +L    +     + L      + +         LT +    L  L    L+ +++  +
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  138 bits (349), Expect = 1e-34
 Identities = 55/287 (19%), Positives = 97/287 (33%), Gaps = 21/287 (7%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH-N 178
           L  L +S   L ++S   F  LSS L+ L L  N    +  ++L P   NL  L + +  
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG 238
              ++    F GL+SLN L++    L       L  +  +  L L  +     +      
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH- 297
           L SV  L+L    LA     S +P       +     + S +   +   L KL       
Sbjct: 195 LSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 298 -----------------HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT 340
                             ++ DV+ +       T+  L +    +        + L  + 
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTM 387
            + + ++ +  +       LKSL+ L L +N +  E           
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  124 bits (312), Expect = 6e-30
 Identities = 42/289 (14%), Positives = 90/289 (31%), Gaps = 23/289 (7%)

Query: 108 TVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGL-PNNLLSVVPTSALAP 165
           + L   +   ++ L  L +     + +   +     + LQ L +      S +     A 
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
           L  +L+ L++    L   ++ S K +  ++ L L  ++   L +     L ++R L L+ 
Sbjct: 147 L-TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS-----------------TVPRLSSLK 268
             L     + L      + +       +     S                      +   
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 328
           +     ++   V          +  L      +       +  L  +  + + ++++  V
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 329 SGASLAHLSNLTTLDLSHNFLRAL---TQDLITPLKSLQELRLDDNDIS 374
             +   HL +L  LDLS N +               SLQ L L  N + 
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (299), Expect = 2e-28
 Identities = 56/315 (17%), Positives = 107/315 (33%), Gaps = 30/315 (9%)

Query: 85  SESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP 144
           S+SL+ +     ++L     + +  +    L   ++  L +    L              
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILS--SVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 145 LQALGLPNNLLSVVPTS-----ALAPLAPNLDRLDLSHNQLYKL-----------ENTSF 188
                L      +   S      L      L  ++     L  L                
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 189 KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLS 248
               ++  L +    L        + L  ++ + ++ +++ +   +  Q L+S+  LDLS
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342

Query: 249 HNLLAGPLGPSTVP--RLSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQIDVL 304
            NL+      ++       SL+ L ++ N   S+++    L  L  LTSL    N    +
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402

Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
            D S +    +  L+L+   I  V          L  LD+S+N L + +      L  LQ
Sbjct: 403 PD-SCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQ 454

Query: 365 ELRLDDNDISMEPEC 379
           EL +  N +   P+ 
Sbjct: 455 ELYISRNKLKTLPDA 469

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (288), Expect = 5e-27
 Identities = 47/306 (15%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 108 TVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPL 166
           + +      G+T L+ L I +  L+N    +   +   +  L L  +  + +       L
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTLHLSESAFLLEIFADIL 195

Query: 167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
             ++  L+L    L + + +        + +     +   L+ +    L+ L    L+ +
Sbjct: 196 -SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254

Query: 227 RLTVSVVAALQ------------------GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK 268
            +                              ++  L +    L      +    L  +K
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVK 313

Query: 269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI---DVLEDHSFRALSTLSHLDLAHNRI 325
            +++ +++   V       L  L  L    N +    +       A  +L  L L+ N +
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 326 VAVSGAS--LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383
            ++      L  L NLT+LD+S N    +  D     + ++ L L    I +   CI   
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCIPQT 432

Query: 384 FNTMDL 389
              +D+
Sbjct: 433 LEVLDV 438

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (285), Expect = 1e-26
 Identities = 60/281 (21%), Positives = 98/281 (34%), Gaps = 51/281 (18%)

Query: 84  ISESLRGLEPDERVSLLDCTLSNVTVLP---------GKFLEGVTLHGLVISSGELKNIS 134
           + + LR +     V   DCTL+ +                +E VT+  L I    L    
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 135 DGAFIGLSSPLQALGLPNNLLSVVPTSALAPL--------------------------AP 168
              +  L   ++ + + N+ + +VP S    L                           P
Sbjct: 303 STVYSLLEK-VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 169 NLDRLDLSHNQLYKLENTS--FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
           +L  L LS N L  ++ T      L +L  LD+S N    +   C      +R L L   
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW-PEKMRFLNLSST 420

Query: 227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSSVRRGAL 285
            + V      Q L     LD+S+N L       +    L  L+ L I+ N+  ++   +L
Sbjct: 421 GIRVVKTCIPQTL---EVLDVSNNNL------DSFSLFLPRLQELYISRNKLKTLPDASL 471

Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326
                L  +    NQ+  + D  F  L++L  + L  N   
Sbjct: 472 --FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
            +  V       F+S+  G  A    + SL    N+I  +     RA + L  L L  +R
Sbjct: 5   DASGVCDGRSRSFTSIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
           I  + G +   L +L  LDLS N L +L+     PL SL+ L L  N        
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 11/49 (22%), Positives = 25/49 (51%)

Query: 643 LLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L +++K L ++ N+ + +  G L     L  L    ++I+ +E  +F +
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  148 bits (376), Expect = 5e-38
 Identities = 68/262 (25%), Positives = 101/262 (38%), Gaps = 13/262 (4%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           +    + S  ++ + D ++   +   Q L L N      PT  L     +L RL  + N+
Sbjct: 284 VSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNK 336

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQ--DCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
                  S   L SL FLDLS N L              +L+ L L  N +  ++ +   
Sbjct: 337 GGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
           GL  +  LD  H+ L      S    L +L  L I+H        G   GL  L  L   
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 298 HNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
            N   +      F  L  L+ LDL+  ++  +S  +   LS+L  L++SHN   +L    
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 357 ITPLKSLQELRLDDNDISMEPE 378
              L SLQ L    N I    +
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  143 bits (363), Expect = 3e-36
 Identities = 53/243 (21%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
            L    + L L  N L  + + +     P L  LDLS  ++  +E+ +++ LS L+ L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
           + N + +L+    + L +L+ L      L       +  L+++ +L+++HNL+     P 
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFRALSTL 315
               L++L+ L ++ N+  S+    L  L ++     SL    N ++ ++  +F+ +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-L 202

Query: 316 SHLDLAHNRI-VAVSGASLAHLSNLTTLDLSHNFLR---ALTQDLITPLKSLQELRLDDN 371
             L L +N   + V    +  L+ L    L     R    L +   + L+ L  L +++ 
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 372 DIS 374
            ++
Sbjct: 263 RLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  138 bits (350), Expect = 1e-34
 Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 130 LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA-PNLDRLDLSHNQLYKLENTSF 188
            K  +  + + L S L+ L L  N LS     + +     +L  LDLS N +  + + +F
Sbjct: 335 NKGGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NF 392

Query: 189 KGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL 247
            GL  L  LD  ++ L  +S       L  L  L +      V+      GL S+  L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH 307
           + N       P     L +L  L ++  Q   +   A   L  L  L+  HN    L+  
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 308 SFRALSTLSHLDLAHNRIVAVSGASLAHL-SNLTTLDLSHN 347
            ++ L++L  LD + N I+      L H  S+L  L+L+ N
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (320), Expect = 7e-31
 Identities = 64/314 (20%), Positives = 99/314 (31%), Gaps = 20/314 (6%)

Query: 77  NKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG------KFLEGVTLHGLVISSGEL 130
           N   L  +   ++GL   E   L+     N   L        + L  +T+    ++  + 
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG 190
                       + + +  L +  +  V   +          L+L + +  +      K 
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF---GWQHLELVNCKFGQFPTLKLKS 326

Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV--AALQGLRSVTDLDLS 248
           L  L F         +        L +L  L L  N L+       +  G  S+  LDLS
Sbjct: 327 LKRLTFTSNKGGNAFSEVD-----LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 249 HNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDH 307
            N +      S    L  L+ L   H+    +        L  L  L   H    V  + 
Sbjct: 382 FNGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 308 SFRALSTLSHLDLAHNRIV-AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 366
            F  LS+L  L +A N             L NLT LDLS   L  L+      L SLQ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 367 RLDDNDISMEPECI 380
            +  N+        
Sbjct: 500 NMSHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  126 bits (319), Expect = 1e-30
 Identities = 68/307 (22%), Positives = 117/307 (38%), Gaps = 38/307 (12%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L+++   +++++ GAF GLSS LQ L      L+ +    +  L   L  L+++HN 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHL-KTLKELNVAHNL 135

Query: 180 LYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV----LRLQGNRLTVSVVA 234
           +   +    F  L++L  LDLS NK+ ++    L  L  + +    L L  N +      
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR------GALAGL 288
           A + +R +  L L +N  +  +  + +  L+ L+V  +   +F +          AL GL
Sbjct: 196 AFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 289 DKLTSLSCHHNQIDVLED---HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
             LT        +D   D     F  L+ +S   L    I  V     ++      L+L 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELV 312

Query: 346 HNFLRALTQDL-------------------ITPLKSLQELRLDDNDISMEPECIYVGFNT 386
           +                                L SL+ L L  N +S +  C    F T
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 387 MDLELIY 393
             L+ + 
Sbjct: 373 TSLKYLD 379

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 23/88 (26%), Positives = 42/88 (47%)

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
             +L    N +  L  +SF +   L  LDL+   I  +   +   LS+L+TL L+ N ++
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPE 378
           +L     + L SLQ+L   + +++    
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLEN 117

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  136 bits (345), Expect = 3e-36
 Identities = 59/209 (28%), Positives = 87/209 (41%), Gaps = 7/209 (3%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
            +   LDLS N L  L + SF     L  LDLS  ++ T+       L  L  L L GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR-GALA 286
           +    + A  GL S+  L      LA  L    +  L +LK L++AHN   S +     +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 287 GLDKLTSLSCHHNQIDVLEDHSFRALSTL----SHLDLAHNRIVAVSGASLAHLSNLTTL 342
            L  L  L    N+I  +     R L  +      LDL+ N +  +   +   +  L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKEL 205

Query: 343 DLSHNFLRALTQDLITPLKSLQELRLDDN 371
            L  N L+++   +   L SLQ++ L  N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  105 bits (264), Expect = 2e-25
 Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 5/195 (2%)

Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
              F     L  L +S  E++ I DGA+  LS  L  L L  N +  +   A + L  +L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSGL-SSL 102

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTL-SQDCLAPLVTLRVLRLQGNRLT 229
            +L      L  LEN     L +L  L++++N + +    +  + L  L  L L  N++ 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLG--PSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
                 L+ L  +  L+LS +L   P+        +   LK L++  NQ  SV  G    
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 288 LDKLTSLSCHHNQID 302
           L  L  +  H N  D
Sbjct: 223 LTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
           P  +P   S K L ++ N    +   +     +L  L     +I  +ED ++++LS LS 
Sbjct: 23  PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80

Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           L L  N I +++  + + LS+L  L      L +L    I  LK+L+EL +  N I 
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.2 bits (214), Expect = 9e-19
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           S  +LDLS N L   LG  +      L+VL ++  +  ++  GA   L  L++L    N 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITP 359
           I  L   +F  LS+L  L      + ++    + HL  L  L+++HN +++    +  + 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 360 LKSLQELRLDDNDISMEPE 378
           L +L+ L L  N I     
Sbjct: 148 LTNLEHLDLSSNKIQSIYC 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 110 LPGKFLEGVTLHGLVISSGELKNISDGAFIGLSS---PLQALGLPNNLLSVVPTSALAPL 166
           LP  F     L  L +SS ++++I       L        +L L  N ++ +   A   +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
              L  L L  NQL  + +  F  L+SL  + L  N
Sbjct: 201 --RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 17/71 (23%), Positives = 26/71 (36%)

Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
            +  +LDL+ N +  +   S      L  LDLS   ++ +       L  L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 373 ISMEPECIYVG 383
           I       + G
Sbjct: 88  IQSLALGAFSG 98

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  136 bits (343), Expect = 2e-34
 Identities = 65/299 (21%), Positives = 105/299 (35%), Gaps = 27/299 (9%)

Query: 98  SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNIS-DGAFIGLSSPLQALGLPNNLLS 156
           +L  C L    +    F    +L  LV+    +K I     F+ +      L L  N + 
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVK 167

Query: 157 VVPTSALAPL-APNLDRLDLSHNQLYKLENT--------SFKGLSSLNFLDLSYNKLMTL 207
            +    L      +   L LS   L  +           +    +S+  LDLS N     
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

Query: 208 SQDCLAPLVTLRVLR-------------LQGNRLTVSVVAALQGLR--SVTDLDLSHNLL 252
                   +    ++                           +GL    V   DLS + +
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287

Query: 253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRAL 312
              L  S     + L+ L++A N+ + +   A  GL  L  L+   N +  ++   F  L
Sbjct: 288 FA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346

Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
             L  LDL++N I A+   S   L NL  L L  N L+++   +   L SLQ++ L  N
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  135 bits (342), Expect = 3e-34
 Identities = 68/345 (19%), Positives = 133/345 (38%), Gaps = 54/345 (15%)

Query: 85  SESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP 144
             S   L+  + + +   T   + +    F    +L  L +   +   +  GAF GL++ 
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN- 104

Query: 145 LQALGLPNNLL--SVVPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSY 201
           L+ L L    L  +V+  +   PL  +L+ L L  N + K++  + F  +   + LDL++
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163

Query: 202 NKLMTLSQDCLAP----------------------------------LVTLRVLRLQGNR 227
           NK+ ++ ++ L                                      ++  L L GN 
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 228 LTVSVVAALQGLRSVTDL-------------DLSHNLLAG-PLGPSTVPRLSSLKVLSIA 273
              S+        + T +                H                S +K   ++
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283

Query: 274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333
            ++  ++ +   +    L  L+   N+I+ ++D++F  L+ L  L+L+ N + ++     
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
            +L  L  LDLS+N +RAL       L +L+EL LD N +   P+
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  131 bits (331), Expect = 7e-33
 Identities = 65/298 (21%), Positives = 103/298 (34%), Gaps = 30/298 (10%)

Query: 111 PGKFLEGVTLHGLVISSGELK-NISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPN 169
              F     L  L +        I +  F GLSS L  L L  N    + T A   L  N
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS-LIILKLDYNQFLQLETGAFNGL-AN 104

Query: 170 LDRLDLSHNQL--YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCL-APLVTLRVLRLQGN 226
           L+ L L+   L    L    FK L+SL  L L  N +  +        +    VL L  N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

Query: 227 RLTVSVVAALQGLRS--VTDLDLSHNLL-------AGPLGPSTVPRLSSLKVLSIAHNQF 277
           ++       L   +    T L LS   L        G        + +S+  L ++ N F
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 278 SSVRRGALAGLDKLTSL-------------SCHHNQIDVLEDHSFRAL--STLSHLDLAH 322
                         T +             S  H      ++ +F+ L  S +   DL+ 
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
           ++I A+  +  +H ++L  L L+ N +  +  +    L  L +L L  N +      +
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (306), Expect = 1e-29
 Identities = 46/262 (17%), Positives = 92/262 (35%), Gaps = 31/262 (11%)

Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT-LSQDCLA 213
           L  VP      L  +++ +DLS N + +L  TSF  L  L FL +        +  +   
Sbjct: 22  LHQVP-----ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76

Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV-PRLSSLKVLSI 272
            L +L +L+L  N+       A  GL ++  L L+   L G +        L+SL++L +
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 273 AHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRAL--STLSHLDLAHNRIVAVS 329
             N    ++       + +   L    N++  + +           + L L+   +  ++
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196

Query: 330 GASLA--------HLSNLTTLDLSHNFLRALTQDLITPLKSLQELR-------------L 368
              L           +++TTLDLS N  +           +  +++              
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 369 DDNDISMEPECIYVGFNTMDLE 390
              +        + G     ++
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVK 278

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  105 bits (263), Expect = 4e-24
 Identities = 44/208 (21%), Positives = 72/208 (34%), Gaps = 14/208 (6%)

Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQ------------ALGLPNNLL 155
               G   +  ++  L +S    K      F    +  +                 +   
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 156 SVVPTSALAPL-APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
                     L A  +   DLS ++++ L  + F   + L  L L+ N++  +  +    
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
           L  L  L L  N L        + L  +  LDLS+N +   LG  +   L +LK L++  
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDT 380

Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQID 302
           NQ  SV  G    L  L  +  H N  D
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.5 bits (230), Expect = 6e-20
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 5/166 (3%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHN 299
            V  +DLS N +A  L  ++  RL  L+ L +        +R     GL  L  L   +N
Sbjct: 31  HVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRI--VAVSGASLAHLSNLTTLDLSHNFLRALT-QDL 356
           Q   LE  +F  L+ L  L L    +    +SG     L++L  L L  N ++ +     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 357 ITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTL 402
              ++    L L  N +    E   + F      L+         +
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
            + L+ L++A N+ + +   A  GL  L  L+   N +  ++   F N
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L+ L  L+++ N   S+       LDKL  L   +N I  L D SF  
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 2e-34
 Identities = 61/279 (21%), Positives = 120/279 (43%), Gaps = 25/279 (8%)

Query: 100 LDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
           L      V  + G  +E +T L  L ++  ++ +IS      L   L  L +  N ++ +
Sbjct: 49  LVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDIS--PLSNLVK-LTNLYIGTNKITDI 103

Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
              AL  L  NL  L L+ + +  +       L+ +  L+L  N  ++     L+ +  L
Sbjct: 104 S--ALQNL-TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGL 157

Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
             L +  +++    V  +  L  +  L L++N +      S +  L+SL   +   NQ +
Sbjct: 158 NYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQIT 212

Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
            +    +A + +L SL   +N+I  L       LS L+ L++  N+I  ++   +  L+ 
Sbjct: 213 DIT--PVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDINA--VKDLTK 266

Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
           L  L++  N +  ++   +  L  L  L L++N +  E 
Sbjct: 267 LKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNED 303

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 3e-34
 Identities = 66/255 (25%), Positives = 119/255 (46%), Gaps = 20/255 (7%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L I + ++ +IS  A   L++ L+ L L  + +S +    LA L   +  L+L  N 
Sbjct: 90  LTNLYIGTNKITDIS--ALQNLTN-LRELYLNEDNISDIS--PLANL-TKMYSLNLGANH 143

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
                 +    ++ LN+L ++ +K+  ++   +A L  L  L L  N++    ++ L  L
Sbjct: 144 NLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASL 198

Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
            S+       N +      + V  ++ L  L I +N+ + +    LA L +LT L    N
Sbjct: 199 TSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTN 253

Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
           QI  +   + + L+ L  L++  N+I  +S   L +LS L +L L++N L     ++I  
Sbjct: 254 QISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 360 LKSLQELRLDDNDIS 374
           L +L  L L  N I+
Sbjct: 310 LTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (334), Expect = 5e-34
 Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 20/256 (7%)

Query: 119 TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN 178
            L  L ++   + +IS      L+  + +L L  N       S L+ +   L+ L ++ +
Sbjct: 111 NLRELYLNEDNISDIS--PLANLTK-MYSLNLGANHNLSDL-SPLSNM-TGLNYLTVTES 165

Query: 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG 238
           ++  +       L+ L  L L+YN++  +S   LA L +L       N++T   +  +  
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVAN 219

Query: 239 LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
           +  +  L + +N +      S +  LS L  L I  NQ S +   A+  L KL  L+   
Sbjct: 220 MTRLNSLKIGNNKITDL---SPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGS 274

Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
           NQI  +       LS L+ L L +N++       +  L+NLTTL LS N +  +    + 
Sbjct: 275 NQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330

Query: 359 PLKSLQELRLDDNDIS 374
            L  +      +  I 
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (295), Expect = 8e-29
 Identities = 48/231 (20%), Positives = 100/231 (43%), Gaps = 21/231 (9%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
              L      ++ +     A L     R  L    +  +     + L S+  L ++  K+
Sbjct: 2   AATLATLPAPINQI--FPDADL-AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
            ++    +  L  L  L L GN++T   ++ L  L  +T+L +  N +      S +  L
Sbjct: 57  ASIQG--IEYLTNLEYLNLNGNQIT--DISPLSNLVKLTNLYIGTNKIT---DISALQNL 109

Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAHN 323
           ++L+ L +  +  S +    LA L K+ SL+   N  +  L       ++ L++L +  +
Sbjct: 110 TNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTES 165

Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           ++  V+   +A+L++L +L L++N +  ++   +  L SL       N I+
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =   99 bits (250), Expect = 5e-23
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 17/185 (9%)

Query: 190 GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH 249
           G ++L  L    N++   +      L       LQ   +T  V    + L S+T L ++ 
Sbjct: 1   GAATLATLPAPINQIFPDAD-----LAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 309
             +A       +  L++L+ L++  NQ + +    L+ L KLT+L    N+I  +   + 
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS--AL 106

Query: 310 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 369
           + L+ L  L L  + I  +S   LA+L+ + +L+L  N   +    L   +  L  L + 
Sbjct: 107 QNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSPLSN-MTGLNYLTVT 163

Query: 370 DNDIS 374
           ++ + 
Sbjct: 164 ESKVK 168

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  137 bits (346), Expect = 1e-33
 Identities = 53/339 (15%), Positives = 116/339 (34%), Gaps = 30/339 (8%)

Query: 67  DLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNV----TVLPGKFLEGVTLHG 122
           D    L  +    D    +  ++ ++ D R+SL D  + N+    T +         L  
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
           +  ++                   A             S  + L  +L  ++L +     
Sbjct: 453 IYFANSPFTYD-----NIAVDWEDANSDYAKQYENEELS-WSNL-KDLTDVELYNCPNMT 505

Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQ---------DCLAPLVTLRVLRLQGNRLT-VSV 232
                   L  L  L+++ N+ ++ +Q         D       +++  +  N L     
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
            A+LQ +  +  LD  HN +              L  L + +NQ   +     A  D++ 
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRHL---EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622

Query: 293 SLSCHHNQIDVL-EDHSFRALSTLSHLDLAHNRIVAV-----SGASLAHLSNLTTLDLSH 346
            L   HN++  +    + +++  +  +D ++N+I +               N +T+ LS+
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 347 NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFN 385
           N ++    +L      +  + L +N ++  PE      +
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  133 bits (336), Expect = 2e-32
 Identities = 53/322 (16%), Positives = 119/322 (36%), Gaps = 28/322 (8%)

Query: 77  NKSDLYAISESLRGLEPDERVSLLDCTLSNVT-VLPGKFLEGVTLHGLVI--SSGELKNI 133
           ++  ++     L   +      LL   ++    + P K    ++L    I   +  +  I
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 134 SDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSS 193
           S  A   L+  LQ +   N+  +    +       + +  +  + + Y+ E  S+  L  
Sbjct: 441 SK-AIQRLTK-LQIIYFANSPFTYDNIAV------DWEDANSDYAKQYENEELSWSNLKD 492

Query: 194 LNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT---------VSVVAALQGLRSVTD 244
           L  ++L     MT   D L  L  L+ L +  NR             +         +  
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
             + +N L      +++ ++  L +L   HN+   +   A     KLT L   +NQI+ +
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEI 610

Query: 305 EDHSFRALSTLSHLDLAHNRIVAV-SGASLAHLSNLTTLDLSHNFLRALTQDLITPL--- 360
            +        +  L  +HN++  + +  +   +  + ++D S+N + +  +++   +   
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 361 --KSLQELRLDDNDISMEPECI 380
              +   + L  N+I   P  +
Sbjct: 671 KGINASTVTLSYNEIQKFPTEL 692

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  133 bits (336), Expect = 2e-32
 Identities = 52/315 (16%), Positives = 99/315 (31%), Gaps = 22/315 (6%)

Query: 86  ESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSG-ELKNISDGAFIGLSSP 144
           E L     +ER   +      + +   + L    L    I+   E+K I   + I L   
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK-- 426

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
              +G   N ++ +   A+  L   L  +  +++       T           +  Y K 
Sbjct: 427 DTQIGNLTNRITFIS-KAIQRL-TKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQ 479

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLG------- 257
               +   + L  L  + L        +   L  L  +  L+++ N              
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 258 -PSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL 315
                     +++  + +N         +L  + KL  L C HN++  L   +F     L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKL 597

Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL-ITPLKSLQELRLDDNDIS 374
           + L L +N+I  +     A    +  L  SHN L+ +        +  +  +    N I 
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 375 MEPECIYVGFNTMDL 389
            E   I    +    
Sbjct: 658 SEGRNISCSMDDYKG 672

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  117 bits (295), Expect = 2e-27
 Identities = 52/291 (17%), Positives = 99/291 (34%), Gaps = 36/291 (12%)

Query: 106 NVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALA 164
            +  +P  F      + GL  S  +LK I +         + ++    N +     +   
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 165 PLAP----NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP------ 214
            +      N   + LS+N++ K     F   S ++ + LS N + ++ ++ L P      
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 215 -LVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSI 272
               L  + L+ N+LT +S       L  ++++D+S+N  +    P+     S LK   I
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-F-PTQPLNSSQLKAFGI 783

Query: 273 AHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS 332
            H + +                    N+I            +L  L +  N I  V    
Sbjct: 784 RHQRDAE------------------GNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825

Query: 333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383
                 L  LD++ N   ++    + P        L  +       C  +G
Sbjct: 826 ---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (252), Expect = 4e-22
 Identities = 39/235 (16%), Positives = 73/235 (31%), Gaps = 22/235 (9%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSP----LQALGLPNNLLSVVPTSALAPLAPNLDRLDL 175
           +  +  S  ++ +        +          + L  N +   PT   A     +  + L
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG-SPISTIIL 704

Query: 176 SHNQL-------YKLENTSFKGLSSLNFLDLSYNKLMTLSQD-CLAPLVTLRVLRLQGNR 227
           S+N +        K ++ ++K    L  +DL +NKL +LS D     L  L  + +  N 
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGP-----LGPSTVPRLSSLKVLSIAHNQFSSVRR 282
            + S          +    + H   A         P+ +    SL  L I  N    V  
Sbjct: 765 FS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823

Query: 283 GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 337
                  +L  L    N    ++  S           L +++   + G     + 
Sbjct: 824 KLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.7 bits (225), Expect = 5e-19
 Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 23/214 (10%)

Query: 115 LEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA------P 168
            +G+    + +S  E++      F   S  +  + L NNL++ +P ++L P         
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSP-ISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 169 NLDRLDLSHNQLYKL-ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ--- 224
            L  +DL  N+L  L ++     L  L+ +D+SYN   +           L+   ++   
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP-TQPLNSSQLKAFGIRHQR 787

Query: 225 ---GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQFSS 279
              GNR+       +    S+  L +  N +        V       L +L IA N   S
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI------RKVDEKLTPQLYILDIADNPNIS 841

Query: 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS 313
           +   ++    +       +++   +       + 
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.5 bits (214), Expect = 1e-17
 Identities = 30/233 (12%), Positives = 66/233 (28%), Gaps = 27/233 (11%)

Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
            +   +               +  L L+         D +  L  L+VL    +  TVS 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
                   +    +   + +        +     L +  +  +  +      +  + K +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDS 421

Query: 293 SLSCHHNQIDVLE------DHSFRALSTLSHLDLAHNRIVAVSG---------------- 330
            +S    QI  L         + + L+ L  +  A++     +                 
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 331 ---ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
               S ++L +LT ++L +        D +  L  LQ L +  N      +  
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  124 bits (314), Expect = 2e-32
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 8/213 (3%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN-QLYKLENTSFKGLSSLNFLD 198
            L    Q L L    L  +P+ A + L PN+ R+ +S +  L +LE+ SF  LS +  ++
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 199 LSYNK-LMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPL 256
           +   + L  +  D L  L  L+ L +    L     +  +        L+++ N     +
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 257 GPSTVPRLSS-LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRAL-S 313
             +    L +    L + +N F+SV+  A  G  KL ++  + N+ + V++  +F  + S
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 314 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
             S LD++   + A+    L HL  L   +   
Sbjct: 206 GPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  112 bits (282), Expect = 3e-28
 Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 12/230 (5%)

Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
              +   +    +  +P+     L P+   L L    L  + + +F  L +++ + +S +
Sbjct: 11  HQEEDFRVTCKDIQRIPS-----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 203 -KLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA-ALQGLRSVTDLDLSHNLLAGPLGPST 260
             L  L       L  +  + ++  R    +   AL+ L  +  L + +  L      + 
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 261 VPRLSSLKVLSIAHN-QFSSVRRGALAGLDKLT-SLSCHHNQIDVLEDHSFRALSTLSHL 318
           V       +L I  N   +S+   A  GL   T +L  ++N    ++ ++F   + L  +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN-GTKLDAV 184

Query: 319 DLAHNR-IVAVSGASLAHL-SNLTTLDLSHNFLRALTQDLITPLKSLQEL 366
            L  N+ +  +   +   + S  + LD+S   + AL    +  LK L   
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 87.8 bits (218), Expect = 1e-19
 Identities = 41/250 (16%), Positives = 82/250 (32%), Gaps = 22/250 (8%)

Query: 56  CPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFL 115
                   C C      R T    D+  I       +       L    +++  +P    
Sbjct: 4   SSPP----CECHQEEDFRVTCK--DIQRIPSLPPSTQ------TLKLIETHLRTIPSHAF 51

Query: 116 EGVT-LHGLVISS-GELKNISDGAFIGLSSPLQALGLPNN-LLSVVPTSALAPLAPNLDR 172
             +  +  + +S    L+ +   +F  LS  +  + + N   L+ +   AL  L P L  
Sbjct: 52  SNLPNISRIYVSIDVTLQQLESHSFYNLSK-VTHIEIRNTRNLTYIDPDALKEL-PLLKF 109

Query: 173 LDLSHNQLYKL-ENTSFKGLSSLNFLDLSYNKLMT-LSQDCLAPLVT-LRVLRLQGNRLT 229
           L + +  L    + T          L+++ N  MT +  +    L      L+L  N  T
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL-SSLKVLSIAHNQFSSVRRGALAGL 288
                A  G +    + L+ N     +       + S   +L ++    +++    L  L
Sbjct: 170 SVQGYAFNGTKLDA-VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228

Query: 289 DKLTSLSCHH 298
            +L + +   
Sbjct: 229 KELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 86.2 bits (214), Expect = 4e-19
 Identities = 29/184 (15%), Positives = 66/184 (35%), Gaps = 9/184 (4%)

Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
                  ++   +  +         + + L+L    L      A   L +++ + +S ++
Sbjct: 11  HQEEDFRVTCKDIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF- 309
               L   +   LS +  + I + +  + +   AL  L  L  L   +  + +  D +  
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 310 RALSTLSHLDLAHN-RIVAVSGASLAHLSNLT-TLDLSHNFLRALTQDLITPLKSLQELR 367
            +      L++  N  + ++   +   L N T TL L +N   ++        K L  + 
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVY 185

Query: 368 LDDN 371
           L+ N
Sbjct: 186 LNKN 189

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLP-NNLLSVVPTSALAPLAPNLDRLDLSHN 178
           L  L I +  LK   D   +  +     L +  N  ++ +P +A   L      L L +N
Sbjct: 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 179 QLYKLENTSFKGLSSLNFLDLSYNK-LMTLSQDCLAPLVT-LRVLRLQGNRLTVSVVAAL 236
               ++  +F G   L+ + L+ NK L  + +D    + +   +L +    +T      L
Sbjct: 167 GFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

Query: 237 QGLRSVTDLDLSHNL 251
           + L+ +   +    L
Sbjct: 226 EHLKELIARNT-WTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN-RIVAVSGASLAHLSNLTTLDLSHN-F 348
             +L      +  +  H+F  L  +S + ++ +  +  +   S  +LS +T +++ +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 349 LRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLEL 391
           L  +  D +  L  L+ L + +  + M P+   V    +   L
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFIL 135

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  125 bits (316), Expect = 2e-32
 Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 25/203 (12%)

Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
           +  +LDL  N+L  L + +F  L+ L  L L+ NKL TL       L  L  L +  N+L
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
                                      L      +L +L  L +  NQ  S+       L
Sbjct: 98  QA-------------------------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132

Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
            KLT LS  +N++  L    F  L++L  L L +N++  V   +   L+ L TL L +N 
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192

Query: 349 LRALTQDLITPLKSLQELRLDDN 371
           L+ + +     L+ L+ L+L +N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  104 bits (262), Expect = 4e-25
 Identities = 54/185 (29%), Positives = 78/185 (42%), Gaps = 3/185 (1%)

Query: 118 VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH 177
                L + S +L ++   AF  L+  L+ L L +N L  +P      L  NL+ L ++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTK-LRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTD 94

Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ 237
           N+L  L    F  L +L  L L  N+L +L       L  L  L L  N L         
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
            L S+ +L L +N L   +      +L+ LK L + +NQ   V  GA   L+KL  L   
Sbjct: 155 KLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 298 HNQID 302
            N  D
Sbjct: 214 ENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 3/152 (1%)

Query: 100 LDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
           L    + +  LP G F E   L  L ++  +L+ +  G F  L + L  L L  N L  +
Sbjct: 66  LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN-LAELRLDRNQLKSL 124

Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL 218
           P      L   L  L L +N+L  L    F  L+SL  L L  N+L  + +     L  L
Sbjct: 125 PPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183

Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
           + L+L  N+L      A   L  +  L L  N
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 313 STLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND 372
           +    LDL  N++ ++   +   L+ L  L L+ N L+ L   +   LK+L+ L + DN 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 373 ISMEPECIYVG 383
           +   P  ++  
Sbjct: 97  LQALPIGVFDQ 107

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  126 bits (318), Expect = 6e-32
 Identities = 44/235 (18%), Positives = 84/235 (35%), Gaps = 8/235 (3%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ-LYKLENTSFKGLSSLNFLD 198
            L      L      L V+   A +    +L+++++S N  L  +E   F  L  L+ + 
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 199 LS-YNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLG 257
           +   N L+ ++ +    L  L+ L +    +                LD+  N+    + 
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 258 PSTVPRLSS-LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
            ++   LS    +L +  N    +   A  G          +N ++ L +  F   S   
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
            LD++  RI ++    L +L  L      +  L+ L    +  L +L E  L   
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKL--PTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  125 bits (316), Expect = 1e-31
 Identities = 47/253 (18%), Positives = 86/253 (33%), Gaps = 13/253 (5%)

Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN-LLSVV 158
             C  S VT +P           L     +L+ I  GAF G    L+ + +  N +L V+
Sbjct: 14  FLCQESKVTEIPSDLPRNAIE--LRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVI 70

Query: 159 PTSALAPLAPNLDRLDLSH-NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVT 217
                + L P L  + +   N L  +   +F+ L +L +L +S   +  L        + 
Sbjct: 71  EADVFSNL-PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 218 LRVLRLQGN-RLTVSVVAALQGLRSVT-DLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
             +L +Q N  +      +  GL   +  L L+ N +   +  S        ++    +N
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNN 188

Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
               +      G      L     +I  L  +    L  L      + + +     +L  
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP----TLEK 244

Query: 336 LSNLTTLDLSHNF 348
           L  L    L++  
Sbjct: 245 LVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  105 bits (264), Expect = 7e-25
 Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 33/231 (14%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM-TLSQD 210
            + ++ +P+     L  N   L     +L  ++  +F G   L  +++S N ++  +  D
Sbjct: 18  ESKVTEIPSD----LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73

Query: 211 CLAPLVTLRVLRLQ-GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
             + L  L  +R++  N L                  ++               L +L+ 
Sbjct: 74  VFSNLPKLHEIRIEKANNLLY----------------INPEAFQN---------LPNLQY 108

Query: 270 LSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALSTLSH-LDLAHNRIVA 327
           L I++     +         +   L    +  I  +E +SF  LS  S  L L  N I  
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168

Query: 328 VSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
           +  ++             +N L  L  D+         L +    I   P 
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 86.0 bits (213), Expect = 3e-18
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 11/220 (5%)

Query: 106 NVTVLPGKFLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLP-NNLLSVVPTSAL 163
           N+  +  +  + +  L  L+IS+  +K++ D   I        L +  N  +  +  ++ 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSF 149

Query: 164 APLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
             L+     L L+ N + ++ N++F G           N L  L  D         +L +
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
              R+       L+ L+ +      +           +P L  L  L  A   + S    
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNL--------KKLPTLEKLVALMEASLTYPSHCCA 261

Query: 284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
                 +++ L    N+  + ++  +   +      LA +
Sbjct: 262 FANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAED 301

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  122 bits (307), Expect = 4e-31
 Identities = 55/230 (23%), Positives = 80/230 (34%), Gaps = 33/230 (14%)

Query: 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY 201
            +    +      L+ +P         +   L LS N LY     +    + L  L+L  
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPK----DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 202 NKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV 261
            +L  L  D    L  L  L L  N+L  S+    Q L ++T LD+S N           
Sbjct: 65  AELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN----------- 110

Query: 262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
                         + +S+  GAL GL +L  L    N++  L          L  L LA
Sbjct: 111 --------------RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156

Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           +N +  +    L  L NL TL L  N L  + +        L    L  N
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  107 bits (268), Expect = 8e-26
 Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 13/195 (6%)

Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
               ++S   ++     L  L  D         +L L  N L    +A L     +T L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 247 LSHNLLAGPLGPSTVP---RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
           L    L      + +     L  L  L ++HNQ  S+       L  LT L    N++  
Sbjct: 62  LDRAEL------TKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTS 114

Query: 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL 363
           L   + R L  L  L L  N +  +    L     L  L L++N L  L   L+  L++L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 364 QELRLDDNDISMEPE 378
             L L +N +   P+
Sbjct: 175 DTLLLQENSLYTIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
           LD + + +  LP        L  L +S   L ++  GA  GL   LQ L L  N L  +P
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLP 140

Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
              L P  P L++L L++N L +L      GL +L+ L L  N L T+ +        L 
Sbjct: 141 PGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLP 198

Query: 220 VLRLQGN 226
              L GN
Sbjct: 199 FAFLHGN 205

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  127 bits (320), Expect = 6e-31
 Identities = 53/249 (21%), Positives = 105/249 (42%), Gaps = 19/249 (7%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
                L    ++   T     L  ++D++  +++ +  ++    + L ++  L L+ NKL
Sbjct: 23  TIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 77

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
             +    L  L  L  L L  N++    +++L+ L+ +  L L HN ++     + +  L
Sbjct: 78  TDIKP--LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDI---NGLVHL 130

Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
             L+ L + +N+ + +    L+ L KL +LS   NQI  +       L+ L +L L+ N 
Sbjct: 131 PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNH 186

Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGF 384
           I  +    LA L NL  L+L          +  + L     ++  D  + + PE I    
Sbjct: 187 ISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL-VTPEIISDDG 243

Query: 385 NTMDLELIY 393
           +     + +
Sbjct: 244 DYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  120 bits (303), Expect = 7e-29
 Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 24/237 (10%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           +      +  +  +        A    + +L    +          L+S++ +  + + +
Sbjct: 1   MGETITVSTPIKQI--FPDDAFA-ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 55

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA--GPLGPSTVP 262
            ++    +  L  +  L L GN+LT   +  L  L+++  L L  N +     L      
Sbjct: 56  KSVQ--GIQYLPNVTKLFLNGNKLT--DIKPLTNLKNLGWLFLDENKIKDLSSLK----- 106

Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
            L  LK LS+ HN  S +    L  L +L SL   +N+I  +       L+ L  L L  
Sbjct: 107 DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLED 162

Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC 379
           N+I  +    LA L+ L  L LS N +  L    +  LK+L  L L   +   +P  
Sbjct: 163 NQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPIN 215

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  121 bits (305), Expect = 8e-29
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 41/338 (12%)

Query: 79  SDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAF 138
           ++     + +     DE+   +        V      +   L    I+S      S    
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ-QKSIKKS 178

Query: 139 IGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL------------------ 180
             ++     +G  +N ++ V   A+  L   L +  + ++                    
Sbjct: 179 SRITLKDTQIGQLSNNITFVS-KAVMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

Query: 181 -YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV--------S 231
            YK E+  +  L  L  +++     +T     L  L  ++++ +  NR            
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 232 VVAALQGLRSVTDLDLSHN-LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
            +A       +  + + +N L   P+  +++ ++  L +L   +NQ       A     K
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPV-ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV-SGASLAHLSNLTTLDLSHNFL 349
           L SL+  +NQI  +  +       + +L  AHN++  + +      +S ++ +D S+N +
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 350 RALTQDLITP-------LKSLQELRLDDNDISMEPECI 380
            ++      P         ++  + L +N IS  P+ +
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  121 bits (305), Expect = 8e-29
 Identities = 42/274 (15%), Positives = 87/274 (31%), Gaps = 25/274 (9%)

Query: 130 LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFK 189
           +  I           ++ L   +N L  +P    A     +  +D S+N++  ++  +F 
Sbjct: 365 ITEIPANFCGFTEQ-VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 190 G-------LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-------VSVVAA 235
                     +++ ++LS N++    ++  +    L  + L GN LT             
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 236 LQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 295
            +    +T +DL  N L           L  L  + +++N FS            L    
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFG 542

Query: 296 CHHNQIDV---LEDH---SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
             + +                   +L+ L +  N I  V+        N++ LD+  N  
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPN 599

Query: 350 RALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383
            ++    + P        L  +       C  + 
Sbjct: 600 ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  120 bits (304), Expect = 1e-28
 Identities = 28/267 (10%), Positives = 88/267 (32%), Gaps = 21/267 (7%)

Query: 130 LKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAP----LAPNLDRLDLSHNQLYKLEN 185
           ++      F+          L  + ++  P          +     ++    N +  +  
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK 200

Query: 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245
            +   L+ L    +  +  +  +               +  +   +       L+ +TD+
Sbjct: 201 -AVMRLTKLRQFYMGNSPFVAEN-----ICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR--------GALAGLDKLTSLSCH 297
           ++ +      L P+ +  L  ++++++A N+  S  +              +K+  +   
Sbjct: 255 EVYNCPNLTKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 298 HNQIDVLE-DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
           +N +     + S + +  L  L+  +N++      +      L +L+L++N +  +  + 
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANF 372

Query: 357 ITPLKSLQELRLDDNDISMEPECIYVG 383
               + ++ L    N +   P      
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAK 399

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.7 bits (236), Expect = 2e-20
 Identities = 46/237 (19%), Positives = 75/237 (31%), Gaps = 24/237 (10%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSP------LQALGLPNNLLSVVPTSALAPLAPNLDRL 173
           +  +  S  E+ ++    F  L         + ++ L NN +S  P    +     L  +
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSI 462

Query: 174 DLSHNQL-------YKLENTSFKGLSSLNFLDLSYNKLMTLSQD-CLAPLVTLRVLRLQG 225
           +L  N L        K EN +FK    L  +DL +NKL  LS D     L  L  + L  
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522

Query: 226 NRLT-----VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV 280
           N  +         + L+G       D   N       P  +    SL  L I  N    V
Sbjct: 523 NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGSNDIRKV 581

Query: 281 RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 337
                     ++ L    N    ++              L +++   + G     + 
Sbjct: 582 NEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.2 bits (232), Expect = 6e-20
 Identities = 31/253 (12%), Positives = 71/253 (28%), Gaps = 22/253 (8%)

Query: 136 GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSF----KGL 191
           G  +  +  +  L L     S     A+  L   L+ L L  +     E           
Sbjct: 74  GVSLNSNGRVTGLSLEGFGASGRVPDAIGQL-TELEVLALGSHGEKVNERLFGPKGISAN 132

Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVT--LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH 249
            S                D         L    +  +    S+  + +     T +    
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSF 309
           N +        V RL+ L+   + ++ F +         +       +       ED  +
Sbjct: 193 NNITFV--SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKW 245

Query: 310 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL--------ITPLK 361
             L  L+ +++ +   +      L  L  +  ++++ N   +  Q              +
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 362 SLQELRLDDNDIS 374
            +Q + +  N++ 
Sbjct: 306 KIQIIYIGYNNLK 318

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  115 bits (290), Expect = 9e-29
 Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 23/238 (9%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
                L    ++   T     L  ++D++  +++ +  ++    + L ++  L L+ NKL
Sbjct: 26  TIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA--GPLGPSTVP 262
             +    LA L  L  L L  N++    +++L+ L+ +  L L HN ++    L      
Sbjct: 81  TDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDINGLV----- 131

Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
            L  L+ L + +N+ + +    L+ L KL +LS   NQI  +       L+ L +L L+ 
Sbjct: 132 HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSK 187

Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
           N I  +    LA L NL  L+L          +  + L     ++  D  +   PE I
Sbjct: 188 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 55/279 (19%), Positives = 106/279 (37%), Gaps = 31/279 (11%)

Query: 78  KSDLYAISESLRGLEPDER---VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNIS 134
            S+   +   ++ +  D+        +    +VT       E  ++  ++ ++ ++K++ 
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ 62

Query: 135 DGAFIGLSSP--LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLS 192
                G+     +  L L  N L+ +    LA L  NL  L L  N++  L +   K L 
Sbjct: 63  -----GIQYLPNVTKLFLNGNKLTDI--KPLANL-KNLGWLFLDENKVKDLSS--LKDLK 112

Query: 193 SLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
            L  L L +N +  ++   L  L  L  L L  N++T   +  L  L  +  L L  N +
Sbjct: 113 KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI 168

Query: 253 A--GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
           +   PL       L+ L+ L ++ N  S +R  ALAGL  L  L     +      +   
Sbjct: 169 SDIVPLA-----GLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQS 221

Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
            L   + +      +V      ++   +    ++  +  
Sbjct: 222 NLVVPNTVKNTDGSLVTPE--IISDDGDYEKPNVKWHLP 258

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (298), Expect = 1e-28
 Identities = 67/255 (26%), Positives = 124/255 (48%), Gaps = 21/255 (8%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L ISS ++ +IS      L++ L++L   NN +S +    L  L  NLD L L+ NQ
Sbjct: 179 LERLDISSNKVSDIS--VLAKLTN-LESLIATNNQISDIT--PLGIL-TNLDELSLNGNQ 232

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
           L  +   +   L++L  LDL+ N++  L+   L+ L  L  L+L  N+++   ++ L GL
Sbjct: 233 LKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGL 286

Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
            ++T+L+L+ N L      S +  L +L  L++  N  S +    ++ L KL  L  ++N
Sbjct: 287 TALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNN 341

Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP 359
           ++  +   S   L+ ++ L   HN+I  ++   LA+L+ +T L L+         +    
Sbjct: 342 KVSDVS--SLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 360 LKSLQELRLDDNDIS 374
           +     ++     + 
Sbjct: 398 VSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (266), Expect = 2e-24
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 22/232 (9%)

Query: 144 PLQALG-LPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
           PL +     +  ++ +       LA    +  L    +      S   L  +  L     
Sbjct: 2   PLGSATITQDTPINQI--FTDTALA-EKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRL 56

Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP 262
            + ++    +  L  L  +    N+LT   +  L+ L  + D+ +++N +A     + + 
Sbjct: 57  GIKSIDG--VEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADI---TPLA 109

Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
            L++L  L++ +NQ + +    L  L  L  L    N I  +   +   L++L  L    
Sbjct: 110 NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF-G 164

Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           N++  +    LA+L+ L  LD+S N +  +   ++  L +L+ L   +N IS
Sbjct: 165 NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 212

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  101 bits (254), Expect = 6e-23
 Identities = 53/235 (22%), Positives = 104/235 (44%), Gaps = 19/235 (8%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L ++  +LK+I       L++ L  L L NN +S +    L+ L   L  L L  NQ
Sbjct: 223 LDELSLNGNQLKDIG--TLASLTN-LTDLDLANNQISNLA--PLSGL-TKLTELKLGANQ 276

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
           +  +      GL++L  L+L+ N+L  +S   ++ L  L  L L  N ++   ++ +  L
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISD--ISPVSSL 330

Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
             +  L   +N ++     S++  L+++  LS  HNQ S +    LA L ++T L  +  
Sbjct: 331 TKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQ 385

Query: 300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ 354
                  +    +S  + +      ++  + A+++   + T  D++ N      +
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYTNE 438

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.1 bits (219), Expect = 2e-18
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 13/166 (7%)

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
              L       L    +T +V  +   L  VT L      +        V  L++L  ++
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQIN 74

Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
            ++NQ + +    L  L KL  +  ++NQI  +       L+ L+ L L +N+I  +   
Sbjct: 75  FSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID-- 128

Query: 332 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
            L +L+NL  L+LS N +  ++   ++ L SLQ+L   +    ++P
Sbjct: 129 PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKP 172

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  113 bits (284), Expect = 8e-28
 Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 19/250 (7%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           +  L      ++ +    +  L  NL  L+L  NQ+  L     K L+ +  L+LS N L
Sbjct: 43  ITTLSAFGTGVTTI--EGVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
             +S   +A L +++ L L   ++T   V  L GL ++  L L  N +      S +  L
Sbjct: 98  KNVSA--IAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI---SPLAGL 150

Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
           ++L+ LSI + Q S +    LA L KLT+L    N+I  +      +L  L  + L +N+
Sbjct: 151 TNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQ 206

Query: 325 IVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGF 384
           I  VS   LA+ SNL  + L++  +          L     ++       + P  I    
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP-IAPATISDNG 263

Query: 385 NTMDLELIYS 394
                 L ++
Sbjct: 264 TYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  112 bits (281), Expect = 2e-27
 Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 17/207 (8%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
            N  ++    + +      +   L  +  L      + T+    +  L  L  L L+ N+
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQ 74

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
           +T   +A L+ L  +T+L+LS N L      S +  L S+K L +   Q + V    LAG
Sbjct: 75  IT--DLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDVT--PLAG 127

Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           L  L  L    NQI  +       L+ L +L + + ++  ++   LA+LS LTTL    N
Sbjct: 128 LSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183

Query: 348 FLRALTQDLITPLKSLQELRLDDNDIS 374
            +  ++   +  L +L E+ L +N IS
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 13/164 (7%)

Query: 211 CLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL 270
               L     +    + +T         L  +T L      +        V  L++L  L
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGL 68

Query: 271 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG 330
            +  NQ + +    L  L K+T L    N +  +   +   L ++  LDL   +I  V+ 
Sbjct: 69  ELKDNQITDLA--PLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP 124

Query: 331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
             LA LSNL  L L  N +  ++   +  L +LQ L + +  +S
Sbjct: 125 --LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)

Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
            ++V+     L +   +    + +       T   L  +  LS      +++    +  L
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVTTIE--GVQYL 62

Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
           + L  L    NQI  L     + L+ ++ L+L+ N +  VS   +A L ++ TLDL+   
Sbjct: 63  NNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ 118

Query: 349 LRALTQDLITPLKSLQELRLDDNDIS 374
           +  +T   +  L +LQ L LD N I+
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQIT 142

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  107 bits (269), Expect = 3e-26
 Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 21/227 (9%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
            N  + +L    +  L +   K LS +   +   + + +L+   +     L+ L L  N+
Sbjct: 19  ANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQ 74

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS--SLKVLSIAHNQFSSVRRGAL 285
           ++   ++ L+ L  + +L ++ N L        +  +    L  L + +N+       +L
Sbjct: 75  ISD--LSPLKDLTKLEELSVNRNRL------KNLNGIPSACLSRLFLDNNELRDTD--SL 124

Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
             L  L  LS  +N++  +       LS L  LDL  N I    G  L  L  +  +DL+
Sbjct: 125 IHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLT 180

Query: 346 HNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELI 392
                         L     ++  D    + P  I  G + +D  ++
Sbjct: 181 GQKCVNEPVKYQPELYITNTVKDPDGRW-ISPYYISNGGSYVDGCVL 226

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 5e-26
 Identities = 80/316 (25%), Positives = 126/316 (39%), Gaps = 29/316 (9%)

Query: 72  LRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELK 131
           L          A+S SL  L   E + L +  ++    + G F    +L  L +S   L 
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSG-FKCSASLTSLDLSRNSLS 113

Query: 132 -NISDGAFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYK---LENT 186
             ++    +G  S L+ L + +N L      S    L  +L+ LDLS N +     +   
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-NSLEVLDLSANSISGANVVGWV 172

Query: 187 SFKGLSSLNFLDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245
              G   L  L +S NK+   +    ++  V L  L +  N  +   +  L    ++  L
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTG-IPFLGDCSALQHL 228

Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL--AGLDKLTSLSCHHNQID- 302
           D+S N L+G      +   + LK+L+I+ NQF     G +    L  L  LS   N+   
Sbjct: 229 DISGNKLSGDF-SRAISTCTELKLLNISSNQFV----GPIPPLPLKSLQYLSLAENKFTG 283

Query: 303 VLEDHSFRALSTLSHLDLAHNRIVAVSG---ASLAHLSNLTTLDLSHNFLR-ALTQDLIT 358
            + D    A  TL+ LDL+ N      G         S L +L LS N     L  D + 
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHF---YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 359 PLKSLQELRLDDNDIS 374
            ++ L+ L L  N+ S
Sbjct: 341 KMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (255), Expect = 1e-22
 Identities = 66/247 (26%), Positives = 104/247 (42%), Gaps = 19/247 (7%)

Query: 138 FIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLY-KLENTSFKGLSSLN 195
           F+G  S LQ L +  N LS     + ++     L  L++S NQ    +       L SL 
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRA-ISTC-TELKLLNISSNQFVGPIPPLP---LKSLQ 272

Query: 196 FLDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254
           +L L+ NK    +         TL  L L GN    +V         +  L LS N  +G
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

Query: 255 PLGPSTVPRLSSLKVLSIAHNQFS-SVRRGALAGLDKLTSLSCHHNQI--DVLEDHSFRA 311
            L   T+ ++  LKVL ++ N+FS  +          L +L    N     +L +     
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 312 LSTLSHLDLAHNRIVAVSG---ASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELR 367
            +TL  L L +N     +G    +L++ S L +L LS N+L   +   L + L  L++L+
Sbjct: 393 KNTLQELYLQNNGF---TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLK 448

Query: 368 LDDNDIS 374
           L  N + 
Sbjct: 449 LWLNMLE 455

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 7e-21
 Identities = 55/243 (22%), Positives = 87/243 (35%), Gaps = 14/243 (5%)

Query: 137 AFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
             +   S L +L L  N LS  +P+S L  L   L  L L  N L          + +L 
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSS-LGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 196 FLDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254
            L L +N L   +    L+    L  + L  NRLT  +   +  L ++  L LS+N  +G
Sbjct: 470 TLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL-AGLDKLTSLSCHHNQIDVLEDHSFRALS 313
            + P+ +    SL  L +  N F+    G + A + K +      N I        +   
Sbjct: 529 NI-PAELGDCRSLIWLDLNTNLFN----GTIPAAMFKQSGKI-AANFIAGKRYVYIKNDG 582

Query: 314 TLSHLDLAHNRIVAVSG--ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
                  A N +         L  LS     +++       T        S+  L +  N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

Query: 372 DIS 374
            +S
Sbjct: 643 MLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 2e-20
 Identities = 53/213 (24%), Positives = 81/213 (38%), Gaps = 18/213 (8%)

Query: 173 LDLSHNQLYKLENT---SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
           +DLS   L    +    S   L+ L  L LS + +   S        +L  L L  N L+
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSGFKCSASLTSLDLSRNSLS 113

Query: 230 --VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS---VRRGA 284
             V+ + +L     +  L++S N L  P   S   +L+SL+VL ++ N  S    V    
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 285 LAGLDKLTSLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGA--SLAHLSNLTT 341
             G  +L  L+   N+   +           L  LD++ N     S     L   S L  
Sbjct: 174 SDGCGELKHLAISGNK---ISGDVDVSRCVNLEFLDVSSNNF---STGIPFLGDCSALQH 227

Query: 342 LDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           LD+S N L       I+    L+ L +  N   
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.0 bits (193), Expect = 5e-15
 Identities = 50/247 (20%), Positives = 77/247 (31%), Gaps = 48/247 (19%)

Query: 137 AFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
             +     L+ L L  N L+  +P+  L+    NL+ + LS+N+L          L +L 
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSG-LSNC-TNLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 196 FLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT--------------------V 230
            L LS N         L         +L  L L  N                        
Sbjct: 518 ILKLSNNSFSGNIPAELGD-----CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572

Query: 231 SVVAALQGLRSVTDLDLSHNL--LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
                ++      +   + NL    G      + RLS+    +I    +           
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIR-SEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631

Query: 289 DKLTSLSCHHNQIDVLEDH---SFRALSTLSHLDLAHNRIVAVSG---ASLAHLSNLTTL 342
             +  L   +N    L  +      ++  L  L+L HN I   SG     +  L  L  L
Sbjct: 632 GSMMFLDMSYNM---LSGYIPKEIGSMPYLFILNLGHNDI---SGSIPDEVGDLRGLNIL 685

Query: 343 DLSHNFL 349
           DLS N L
Sbjct: 686 DLSSNKL 692

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 15/167 (8%)

Query: 218 LRVLRLQGNRLTV---SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
           +  + L    L V   +V ++L  L  +  L LS++ + G +  S     +SL  L ++ 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--SGFKCSASLTSLDLSR 109

Query: 275 NQFSSV--RRGALAGLDKLTSLSCHHNQID-VLEDHSFRALSTLSHLDLAHNRI---VAV 328
           N  S       +L     L  L+   N +D   +      L++L  LDL+ N I     V
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 329 SGASLAHLSNLTTLDLSHNFLRALTQDL-ITPLKSLQELRLDDNDIS 374
                     L  L +S N    ++ D+ ++   +L+ L +  N+ S
Sbjct: 170 GWVLSDGCGELKHLAISGN---KISGDVDVSRCVNLEFLDVSSNNFS 213

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 2e-12
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 16/150 (10%)

Query: 137 AFIGLSSPLQALGLPNNLLS---VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSS 193
            +I      +      NLL    +     L  L    +  +++        + +F    S
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRL-STRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 194 LNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLS 248
           + FLD+SYN L       +       +  L +L L  N ++ S+   +  LR +  LDLS
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGS-----MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 249 HNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
            N L G + P  +  L+ L  + +++N  S
Sbjct: 689 SNKLDGRI-PQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 240 RSVTDLDLSHNLLAGPLG--PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH 297
             VT +DLS   L        S++  L+ L+ L ++++  +    G       LTSL   
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108

Query: 298 HNQI--DVLEDHSFRALSTLSHLDLAHNRIVAVSGAS-LAHLSNLTTLDLSHNFLRA--- 351
            N +   V    S  + S L  L+++ N +      S    L++L  LDLS N +     
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 352 LTQDLITPLKSLQELRLDDNDIS 374
           +   L      L+ L +  N IS
Sbjct: 169 VGWVLSDGCGELKHLAISGNKIS 191

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 9e-10
 Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 1/149 (0%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           N +                     +  +   + +     LS+ N  +++       +   
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
                ++  L +  N L+  +   +  +  +  L+L HN ++G + P  V  L  L +L 
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNILD 686

Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           ++ N+       A++ L  LT +   +N 
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 21/128 (16%)

Query: 139 IGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENT-----SFKGLSS 193
           +   S      + + +     +        ++  LD+S+N L     +         +  
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLDMSYNML-----SGYIPKEIGSMPY 657

Query: 194 LNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLS 248
           L  L+L +N +       +       L  L +L L  N+L   +  A+  L  +T++DLS
Sbjct: 658 LFILNLGHNDISGSIPDEVGD-----LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 249 HNLLAGPL 256
           +N L+GP+
Sbjct: 713 NNNLSGPI 720

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (279), Expect = 6e-26
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 9/235 (3%)

Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPN----LDRLDLSHNQLYKLENTSFKGLSSLNFLD 198
           + +    + N  L           +      L    +  +     ++  ++  S++N  +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-PLG 257
            + +    +   C + +     L    N LT +V      L  +  L L  N L      
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
                ++ SL+ L I+ N  S    +G  +    L SL+   N +             + 
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIK 424

Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
            LDL  N+I ++    +  L  L  L+++ N L+++   +   L SLQ++ L  N
Sbjct: 425 VLDLHSNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.0 bits (244), Expect = 1e-21
 Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 10/212 (4%)

Query: 95  ERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
           + +S+               +     ++    +    + +       +S     L   NN
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP-FLHLDFSNN 334

Query: 154 LLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTS--FKGLSSLNFLDLSYNKL-MTLSQD 210
           LL+         L   L+ L L  NQL +L   +     + SL  LD+S N +     + 
Sbjct: 335 LLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 211 CLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL 270
             +   +L  L +  N LT ++   L     +  LDL  N +     P  V +L +L+ L
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSI--PKQVVKLEALQEL 449

Query: 271 SIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
           ++A NQ  SV  G    L  L  +  H N  D
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 95.3 bits (237), Expect = 9e-21
 Identities = 45/251 (17%), Positives = 76/251 (30%), Gaps = 9/251 (3%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
            N L  VP      L+     L++S N + +L  +    LS L  L +S+N++  L    
Sbjct: 9   KNGLIHVPKD----LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV 64

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
                 L  L L  N+L      +     ++  LDLS N             +S LK L 
Sbjct: 65  FKFNQELEYLDLSHNKLV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121

Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
           ++           +A L+    L          E      L   +   L           
Sbjct: 122 LSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 332 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLEL 391
            +  +S  T  +L  + ++ + +D           +L  N          +         
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 392 IYSGVWRHSTL 402
           I   VW  +  
Sbjct: 240 ILQLVWHTTVW 250

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.2 bits (229), Expect = 9e-20
 Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 20/278 (7%)

Query: 113 KFLEGVTLHGLVISSGELKNISDGAFIGLS--SPLQALGLPNNLLSVVPTSALAPLAPNL 170
           +     +LH +  ++ E   I D +   ++         +  +       S LA L  N 
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP----------LVTLRV 220
              +L+ N +    N+  + L  +    + Y  +  +                 L  L +
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280

Query: 221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSS 279
            ++  +          +   ++   + + +     +     P ++S    L  ++N  + 
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHS--FRALSTLSHLDLAHNRIVAVS-GASLAHL 336
                   L +L +L    NQ+  L   +     + +L  LD++ N +         +  
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
            +L +L++S N L       + P   ++ L L  N I 
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 47/274 (17%), Positives = 99/274 (36%), Gaps = 16/274 (5%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAP-NLDRLDLSHN 178
           L  L +S+  L+  S      L+     L L            L      +L  +  ++ 
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176

Query: 179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL---------RLQGNRLT 229
           + + + + S K +++L   ++            L+ L  L+            ++    +
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP----RLSSLKVLSIAHNQFSSVRRGAL 285
              +  L    +V    +S+  L G L           L +L +  +  + F   +    
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
                +   +   +   ++       +S   HLD ++N +      +  HL+ L TL L 
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 346 HNFLRALTQ--DLITPLKSLQELRLDDNDISMEP 377
            N L+ L++  ++ T +KSLQ+L +  N +S + 
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 77.2 bits (190), Expect = 5e-15
 Identities = 50/308 (16%), Positives = 90/308 (29%), Gaps = 46/308 (14%)

Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
               L    L  L+IS   ++ +    F      L+ L L +N L  +          NL
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQE-LEYLDLSHNKLVKISCHPT----VNL 92

Query: 171 DRLDLSHNQLYKL-ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP--------------- 214
             LDLS N    L     F  +S L FL LS   L   S   +A                
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 215 -------LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL----------G 257
                  L       L     T      +  +   T  +L  + +   L           
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 258 PSTVPRLSSLKVLSIAHNQFSS---VRRGALAGLDKLTSLSCHHNQIDVLE-----DHSF 309
            + +     L  L++ + + +    +R   L     +   S  + ++         D+S 
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 310 RALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 369
            +L  LS   +  +             SN+   + + +  R +     + +     L   
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 370 DNDISMEP 377
           +N ++   
Sbjct: 333 NNLLTDTV 340

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 42/306 (13%), Positives = 77/306 (25%), Gaps = 48/306 (15%)

Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
              F     L  L +S  +L  IS        + L+ L L  N    +P          L
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKIS---CHPTVN-LKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
             L LS   L K        L+    L +               L       L     T 
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTN 175

Query: 231 SVVAALQGLRSVTDLDLSHNLLAG------------------------------------ 254
                +  +   T  +L  + +                                      
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 255 -PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA-----GLDKLTSLSCHHNQIDVLEDHS 308
             +    +   +++   SI++ +                L  L+      +     + + 
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 309 FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
           +   S ++  +   +    V     + +S    LD S+N L     +    L  L+ L L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 369 DDNDIS 374
             N + 
Sbjct: 356 QMNQLK 361

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  108 bits (272), Expect = 3e-25
 Identities = 58/280 (20%), Positives = 100/280 (35%), Gaps = 33/280 (11%)

Query: 95  ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL 154
                    +     +  + L  +T   L   +  + +++    I   + L  L   +N 
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTS--LDCHNSSITDMTG---IEKLTGLTKLICTSNN 75

Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
           ++ +  S       NL  L    N+L  L       L+ L +L+   NKL  L    ++ 
Sbjct: 76  ITTLDLSQN----TNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD---VSQ 125

Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
              L  L    N LT   V+    L   T+LD   N     +    V   + L  L  + 
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQL---TELDCHLNKK---ITKLDVTPQTQLTTLDCSF 179

Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
           N+ + +    ++    L  L+C  N I  L+         L+ LD + N++  +    + 
Sbjct: 180 NKITEL---DVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEI---DVT 230

Query: 335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
            L+ LT  D S N L  L    ++ L  L  L     D+ 
Sbjct: 231 PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.5 bits (243), Expect = 1e-21
 Identities = 45/250 (18%), Positives = 83/250 (33%), Gaps = 28/250 (11%)

Query: 131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG 190
           K I+       +  L  L    N ++ +  S        L+RL+   N + KL+      
Sbjct: 159 KKITKLDVTPQTQ-LTTLDCSFNKITELDVSQN----KLLNRLNCDTNNITKLD---LNQ 210

Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
              L FLD S NKL  +    + PL  L       N LT   V+ L  L   T L     
Sbjct: 211 NIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKL---TTLHCIQT 264

Query: 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
            L        +    + +++         ++   +    +L  L C    I  L+     
Sbjct: 265 DL------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LS 315

Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
               L +L L +  +  +    ++H + L +L   +  ++      +  + +L      +
Sbjct: 316 QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAE 370

Query: 371 NDISMEPECI 380
                 P+  
Sbjct: 371 GQTITMPKET 380

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.4 bits (230), Expect = 6e-20
 Identities = 44/207 (21%), Positives = 81/207 (39%), Gaps = 20/207 (9%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
            N      +  ++   +  S + L++L  LD   + +  ++   +  L  L  L    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
           +T   ++    L   T L    N L        V  L+ L  L+   N+ + +    ++ 
Sbjct: 76  ITTLDLSQNTNL---TYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTKL---DVSQ 125

Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
              LT L+C  N +  ++       + L+ LD   N+ +      +   + LTTLD S N
Sbjct: 126 NPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180

Query: 348 FLRALTQDLITPLKSLQELRLDDNDIS 374
            +  L    ++  K L  L  D N+I+
Sbjct: 181 KITELD---VSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 32/211 (15%), Positives = 55/211 (26%), Gaps = 48/211 (22%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L     S   L  +       L++    L      L  +  +        L        +
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTT----LHCIQTDLLEIDLTHN----TQLIYFQAEGCR 286

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
             K++       + L  LD     +  L    L+    L  L L    L           
Sbjct: 287 --KIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTEL----------- 330

Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN 299
              T+LD+SH               + LK LS  +         ++  +  L +      
Sbjct: 331 ---TELDVSH--------------NTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEG 371

Query: 300 QIDVLEDHSFRALS-----TLSHLDLAHNRI 325
           Q   +   +    S     +   LD   N +
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  105 bits (263), Expect = 1e-24
 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 10/223 (4%)

Query: 140 GLSSPLQALGLPNNLLSVV-PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLD 198
            L S    L L +N LS +        L  NL  L LSHN L  + + +F  + +L +LD
Sbjct: 36  SLPSYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-PLG 257
           LS N L TL +   + L  L VL L  N + V    A + +  +  L LS N ++  P+ 
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 258 P-STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT--SLSCHHNQID----VLEDHSFR 310
                 +L  L +L ++ N+   +    L  L       L  H+N ++    + +  S  
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHW 214

Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353
               LS +      +  +    L ++ +L   + S     A  
Sbjct: 215 QYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWE 257

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 98.8 bits (246), Expect = 2e-22
 Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 5/158 (3%)

Query: 240 RSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
                LDLSHN L+  L     P RL++L  L ++HN  + +   A   +  L  L    
Sbjct: 39  SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
           N +  L++  F  L  L  L L +N IV V   +   ++ L  L LS N +     +LI 
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 359 P---LKSLQELRLDDNDISMEPECIYVGFNTMDLELIY 393
               L  L  L L  N +   P              +Y
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 93.8 bits (233), Expect = 7e-21
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 21/203 (10%)

Query: 55  SCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGK 113
           SCP+     C C   + L C+  +  L  + +SL         +LLD + +N++ L    
Sbjct: 11  SCPA----NCLCA-SNILSCSKQQ--LPNVPQSL-----PSYTALLDLSHNNLSRLRAEW 58

Query: 114 FLEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR 172
               +T LH L++S   L  IS  AF+ + + L+ L L +N L  +     + L   L+ 
Sbjct: 59  TPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-LRYLDLSSNHLHTLDEFLFSDL-QALEV 116

Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQD---CLAPLVTLRVLRLQGNRLT 229
           L L +N +  ++  +F+ ++ L  L LS N++     +       L  L +L L  N+L 
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 230 VSVVAALQGLRSVT--DLDLSHN 250
              +  LQ L +     L L +N
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 25/48 (52%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           + +L+ L ++ N   ++     + L  L  L  ++N I V++ ++F +
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSNV 692
           L +L+VL + +N    V R A   + +L  L    NQI         + 
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L++L  L ++HN  + +   A   +  L  L    N +  L++  FS+
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (267), Expect = 3e-24
 Identities = 68/298 (22%), Positives = 107/298 (35%), Gaps = 54/298 (18%)

Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
           L+   S +T LP      +T   LVI    L ++           L+ L +  N L+ +P
Sbjct: 45  LNVGESGLTTLPDCLPAHITT--LVIPDNNLTSLPAL----PPE-LRTLEVSGNQLTSLP 97

Query: 160 TS---------------ALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
                             L  L   L +L +  NQL  L          L  L +S N+L
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQL 153

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR- 263
            +L          L  L    N+LT S+     GL+    L +S N L      +++P  
Sbjct: 154 ASLPAL----PSELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQL------ASLPTL 199

Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
            S L  L   +N+ +S+     A    L  L    N++  L        S L  L ++ N
Sbjct: 200 PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGN 251

Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIY 381
           R+ ++        S L +L +  N L  L  + +  L S   + L+ N +S       
Sbjct: 252 RLTSLP----MLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL 304

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =   99 bits (249), Expect = 4e-22
 Identities = 57/234 (24%), Positives = 88/234 (37%), Gaps = 33/234 (14%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           L  L +  N L+ +P      L P L  L +S NQL  L        S L  L    N+L
Sbjct: 123 LCKLWIFGNQLTSLP-----VLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQL 173

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR- 263
            +L          L+ L +  N+L  S+      L     L   +N L      +++P  
Sbjct: 174 TSLPML----PSGLQELSVSDNQLA-SLPTLPSELYK---LWAYNNRL------TSLPAL 219

Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
            S LK L ++ N+ +S+         +L  L    N++  L        S L  L +  N
Sbjct: 220 PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRN 271

Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
           ++  +   SL HLS+ TT++L  N L   T   +  + S            M  
Sbjct: 272 QLTRLP-ESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.7 bits (243), Expect = 3e-21
 Identities = 48/215 (22%), Positives = 77/215 (35%), Gaps = 32/215 (14%)

Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
           L      L++  + L  L +     +++   L +  N L +L          LR L + G
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCLPAHITT---LVIPDNNLTSLPAL----PPELRTLEVSG 90

Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
           N+LT S+     GL  ++        L        +P  S L  L I  NQ +S+     
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHL------PALP--SGLCKLWIFGNQLTSLP---- 137

Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
                L  LS   NQ+  L        S L  L   +N++ ++        S L  L +S
Sbjct: 138 VLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVS 189

Query: 346 HNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
            N L +L          L +L   +N ++  P   
Sbjct: 190 DNQLASLPTL----PSELYKLWAYNNRLTSLPALP 220

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.1 bits (200), Expect = 4e-16
 Identities = 70/316 (22%), Positives = 115/316 (36%), Gaps = 51/316 (16%)

Query: 71  TLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGEL 130
           TL  + N+  L ++     GL     +S+    L+++  LP        L  L I   +L
Sbjct: 85  TLEVSGNQ--LTSLPVLPPGLL---ELSIFSNPLTHLPALPSG------LCKLWIFGNQL 133

Query: 131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG 190
            ++       L   LQ L + +N L+ +P      L   L +L   +NQL  L       
Sbjct: 134 TSLPV-----LPPGLQELSVSDNQLASLP-----ALPSELCKLWAYNNQLTSLPML---- 179

Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
            S L  L +S N+L +L          L  L    NRLT S+ A   GL+    L +S N
Sbjct: 180 PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLT-SLPALPSGLKE---LIVSGN 231

Query: 251 LLAG-PLGPS-------------TVPR-LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS 295
            L   P+ PS             ++P   S L  LS+  NQ + +    L  L   T+++
Sbjct: 232 RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPES-LIHLSSETTVN 290

Query: 296 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
              N +      + R +++         R      ++      L     + ++L    + 
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREG 348

Query: 356 LITPLKSLQELRLDDN 371
              P         +DN
Sbjct: 349 EPAPADRWHMFGQEDN 364

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (261), Expect = 1e-23
 Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 31/246 (12%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
              L L    LS +P +    L P +  L+++ N L  L        +SL +LD   N+L
Sbjct: 61  FSELQLNRLNLSSLPDN----LPPQITVLEITQNALISLPEL----PASLEYLDACDNRL 112

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-R 263
            TL +       +L+ L +  N+LT  +      L     ++  +N L      + +P  
Sbjct: 113 STLPEL----PASLKHLDVDNNQLT-MLPELPALLEY---INADNNQL------TMLPEL 158

Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR---ALSTLSHLDL 320
            +SL+VLS+ +NQ + +        + L +L    N ++ L     R   +  T      
Sbjct: 159 PTSLEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214

Query: 321 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
             NRI  +   ++  L    T+ L  N L +  ++ ++   +  +        SM     
Sbjct: 215 RENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 381 YVGFNT 386
                 
Sbjct: 274 NTLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  103 bits (258), Expect = 3e-23
 Identities = 45/260 (17%), Positives = 90/260 (34%), Gaps = 33/260 (12%)

Query: 126 SSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN 185
               +       F       +   LP    +   +     L      L L+   L  L +
Sbjct: 18  FYNTISGTYADYFSAWDK-WEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPD 76

Query: 186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL 245
                   +  L+++ N L++L +       +L  L    NRL+ ++      L+    L
Sbjct: 77  NLPP---QITVLEITQNALISLPEL----PASLEYLDACDNRLS-TLPELPASLKH---L 125

Query: 246 DLSHNLLAGPLGPSTVPRL-SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
           D+ +N L      + +P L + L+ ++  +NQ + +          L  LS  +NQ+  L
Sbjct: 126 DVDNNQL------TMLPELPALLEYINADNNQLTML----PELPTSLEVLSVRNNQLTFL 175

Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT----LDLSHNFLRALTQDLITPL 360
            +       +L  LD++ N + ++  A      +            N +  +  + I  L
Sbjct: 176 PE----LPESLEALDVSTNLLESLP-AVPVRNHHSEETEIFFRCRENRITHI-PENILSL 229

Query: 361 KSLQELRLDDNDISMEPECI 380
                + L+DN +S      
Sbjct: 230 DPTCTIILEDNPLSSRIRES 249

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.2 bits (213), Expect = 9e-18
 Identities = 50/289 (17%), Positives = 97/289 (33%), Gaps = 33/289 (11%)

Query: 85  SESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSP 144
           ++     +  E+ +L     +    L  + L       L ++   L ++ D     L   
Sbjct: 27  ADYFSAWDKWEKQALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSSLPDN----LPPQ 81

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           +  L +  N L  +P      L  +L+ LD   N+L  L        +SL  LD+  N+L
Sbjct: 82  ITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPEL----PASLKHLDVDNNQL 132

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR- 263
             L +        L  +    N+LT  +      L     L + +N L      + +P  
Sbjct: 133 TMLPEL----PALLEYINADNNQLT-MLPELPTSLEV---LSVRNNQL------TFLPEL 178

Query: 264 LSSLKVLSIAHNQFSSVRR--GALAGLDKL-TSLSCHHNQIDVLEDHSFRALSTLSHLDL 320
             SL+ L ++ N   S+          ++      C  N+I  + + +  +L     + L
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIIL 237

Query: 321 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD 369
             N + +    SL+  +          +         T  + L +    
Sbjct: 238 EDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 98.2 bits (245), Expect = 2e-23
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 29/169 (17%)

Query: 155 LSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAP 214
           L+ +PT+    L   +  + L  N +  +   +F     L  +DLS N++  L+ D    
Sbjct: 23  LTEIPTN----LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78

Query: 215 LVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH 274
           L +L  L L GN++T                          L  S    L SL++L +  
Sbjct: 79  LRSLNSLVLYGNKITE-------------------------LPKSLFEGLFSLQLLLLNA 113

Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
           N+ + +R  A   L  L  LS + N++  +   +F  L  +  + LA N
Sbjct: 114 NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 91.2 bits (227), Expect = 4e-21
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           ++T++ L  N +   + P        L+ + +++NQ S +   A  GL  L SL  + N+
Sbjct: 33  TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
           I  L    F  L +L  L L  N+I  +   +   L NL  L L  N L+ + +   +PL
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 361 KSLQELRLDDN 371
           +++Q + L  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
           P+ +P   ++  + +  N    +  GA +   KL  +   +NQI  L   +F+ L +L+ 
Sbjct: 27  PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84

Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
           L L  N+I  +  +    L +L  L L+ N +  L  D    L +L  L L DN +    
Sbjct: 85  LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 378 E 378
           +
Sbjct: 145 K 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 26/116 (22%)

Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
           P  F    +L+ LV+   ++  +    F GL                           +L
Sbjct: 73  PDAFQGLRSLNSLVLYGNKITELPKSLFEGL--------------------------FSL 106

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
             L L+ N++  L   +F+ L +LN L L  NKL T+++   +PL  ++ + L  N
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L SL  L +  N+ + + +    GL  L  L  + N+I+ L   +F +
Sbjct: 79  LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L SL++L +  N+ + +R  A   L  L  LS + N++  +   +FS 
Sbjct: 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  102 bits (257), Expect = 2e-23
 Identities = 69/347 (19%), Positives = 121/347 (34%), Gaps = 70/347 (20%)

Query: 68  LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISS 127
           +P       +K++ Y          P       +  +S +     +    + L+ L +SS
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85

Query: 128 --GELKNISDGAFIGLSSPLQALGLPNNLLSVVPTS---------------ALAPLAPNL 170
                 +            L++L    N L+ +P                 AL+ L P L
Sbjct: 86  LPELPPH------------LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 133

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
           + L +S+NQL KL     +  S L  +D+  N L  L         +L  +    N+L  
Sbjct: 134 EYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE 187

Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSSVRRGALAGLD 289
             +  LQ L  +T +   +N L        +P    SL+ +   +N    +    L  L 
Sbjct: 188 --LPELQNLPFLTAIYADNNSL------KKLPDLPLSLESIVAGNNILEELP--ELQNLP 237

Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
            LT++   +N +  L D       +L  L++  N +  +         +LT LD+S N  
Sbjct: 238 FLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIF 289

Query: 350 RALTQ----------------DLITPLKSLQELRLDDNDISMEPECI 380
             L++                 L     SL+EL + +N +   P   
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP 336

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.4 bits (238), Expect = 5e-21
 Identities = 45/276 (16%), Positives = 90/276 (32%), Gaps = 33/276 (11%)

Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA 167
           T L         L  + + +  +K+ ++           A         +  +     L 
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
                L+L++  L  L          L  L  S N L  L  +    L +L V       
Sbjct: 71  RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKA 125

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP---RLSSLKVLSIAHNQFSSVRRGA 284
           L+            +  L +S+N L        +P     S LK++ + +N    +    
Sbjct: 126 LSDL-------PPLLEYLGVSNNQL------EKLPELQNSSFLKIIDVDNNSLKKL---- 168

Query: 285 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
                 L  ++  +NQ++ L     + L  L+ +   +N +  +         +L ++  
Sbjct: 169 PDLPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVA 222

Query: 345 SHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
            +N L  L +  +  L  L  +  D+N +   P+  
Sbjct: 223 GNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLP 256

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 91.6 bits (228), Expect = 1e-19
 Identities = 55/277 (19%), Positives = 100/277 (36%), Gaps = 52/277 (18%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  +   + +L+ + +     L   L A+   NN L  +P      L  +L+ +   +N 
Sbjct: 175 LEFIAAGNNQLEELPE--LQNLPF-LTAIYADNNSLKKLP-----DLPLSLESIVAGNNI 226

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL 239
           L +L     + L  L  +    N L TL         +L  L ++ N LT  +    Q L
Sbjct: 227 LEELP--ELQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLT-DLPELPQSL 279

Query: 240 RSVTDLDLSHNLLAGPLGPSTVPRL-SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHH 298
                LD+S N+       S +  L  +L  L+ + N+  S+          L  L+  +
Sbjct: 280 TF---LDVSENIF------SGLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSN 326

Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT----- 353
           N++  L          L  L  + N +  V         NL  L + +N LR        
Sbjct: 327 NKLIELPAL----PPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDIPES 378

Query: 354 ----------QDLITPLKSLQELRLDDNDISMEPECI 380
                      ++    ++L++L ++ N +   P+  
Sbjct: 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.8 bits (213), Expect = 8e-18
 Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 47/280 (16%)

Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
           +    +++  LP      ++L  +V  +  L+ + +   +     L  +   NNLL  +P
Sbjct: 200 IYADNNSLKKLPD---LPLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTLP 253

Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
                 L P+L+ L++  N L  L         SL FLD+S N    LS+        L 
Sbjct: 254 -----DLPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSEL----PPNLY 300

Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR-LSSLKVLSIAHNQFS 278
            L    N +            S+ +L++S+N L        +P     L+ L  + N  +
Sbjct: 301 YLNASSNEIRSL----CDLPPSLEELNVSNNKL------IELPALPPRLERLIASFNHLA 350

Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN 338
            V          L  L   +N +    D       ++  L + ++ +  V         N
Sbjct: 351 EVP----ELPQNLKQLHVEYNPLREFPD----IPESVEDLRM-NSHLAEVP----ELPQN 397

Query: 339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
           L  L +  N LR          +S+++LR++   +    E
Sbjct: 398 LKQLHVETNPLREFPDIP----ESVEDLRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 18/99 (18%)

Query: 145 LQALGLPNNLLSVVPTS--------------ALAPLAPNLDRLDLSHNQLYKLENTSFKG 190
           L+ L +  N L   P                 +  L  NL +L +  N L +  +     
Sbjct: 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI---- 414

Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
             S+  L ++  +++   +        L     + +   
Sbjct: 415 PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (257), Expect = 4e-23
 Identities = 50/236 (21%), Positives = 90/236 (38%), Gaps = 11/236 (4%)

Query: 143 SPLQALGLPNNLLSVVPTSALAPLA----PNLDRLDLSHNQLYKLENTSFKGLSSLNFLD 198
            P++ L + N  ++          +     +L    + +      +   +   + +N   
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG-PLG 257
           LS +    +   C     +   L    N  T SV      L+ +  L L  N L      
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGAL-AGLDKLTSLSCHHNQIDVLEDHSFRAL-STL 315
                 +SSL+ L ++ N  +S       A  + +  L+   N    L    FR L   +
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM---LTGSVFRCLPPKV 452

Query: 316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
             LDL +NRI+++    + HL  L  L+++ N L+++   +   L SLQ + L DN
Sbjct: 453 KVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.2 bits (221), Expect = 1e-18
 Identities = 54/247 (21%), Positives = 90/247 (36%), Gaps = 14/247 (5%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           N  L+ VP      L P    L LS N + +L       LS L  L LS+N++ +L    
Sbjct: 40  NRNLTHVP----KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
                 L  L +  NRL  ++  +   + S+  LDLS N             L+ L  L 
Sbjct: 96  FLFNQDLEYLDVSHNRLQ-NI--SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152

Query: 272 IAHNQFSSVRRGALAGLD------KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
           ++  +F  +    +A L        L S      + + L+  +   L  + H +   +  
Sbjct: 153 LSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212

Query: 326 VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFN 385
           V +S  +L HL  L+ + L+    + L   L    +    L +    I    +C    F 
Sbjct: 213 VNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271

Query: 386 TMDLELI 392
                 +
Sbjct: 272 FFWPRPV 278

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 53/230 (23%), Positives = 83/230 (36%), Gaps = 20/230 (8%)

Query: 87  SLRGLEPDERVSLLDCTLSNVTVL-----------PGKFLEGVTLHGLVISSGELKNISD 135
           ++      E  +  +  L ++ +               +     ++  ++S  +   I  
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 136 GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFK--GLSS 193
                 SS    L    N+ +       + L   L  L L  N L      +     +SS
Sbjct: 347 VCPPSPSS-FTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSS 404

Query: 194 LNFLDLSYNKLMTLSQDCLAPLV-TLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL 252
           L  LD+S N L + + D       ++ VL L  N LT SV   L     V  LDL +N +
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI 462

Query: 253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
                P  V  L +L+ L++A NQ  SV  G    L  L  +  H N  D
Sbjct: 463 MSI--PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.7 bits (199), Expect = 5e-16
 Identities = 39/272 (14%), Positives = 84/272 (30%), Gaps = 17/272 (6%)

Query: 120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ 179
           L  L +S+ + + +       L      L L +  +    T +L     N   L L  + 
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP--NTTVLHLVFHP 205

Query: 180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCL----------APLVTLRVLRLQGNRLT 229
                      +++L  L LS  KL   +   L            L+ + +  ++     
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPL----GPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
              +      R V  L++ +  +   +       +   L SL +  + +  F   +    
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS 345
           +   ++       +    +      + S+ + L+   N          + L  L TL L 
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 346 HNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
            N L+     +    K++  L   D  ++   
Sbjct: 386 RNGLKNF-FKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 46/283 (16%), Positives = 87/283 (30%), Gaps = 20/283 (7%)

Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
                    L  L +S   ++++    F+     L+ L + +N L  +    +     +L
Sbjct: 69  MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD-LEYLDVSHNRLQNISCCPM----ASL 123

Query: 171 DRLDLSHNQLYKL-ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV-LRLQGNRL 228
             LDLS N    L     F  L+ L FL LS  K   L    +A L    + L L    +
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 229 TVSVVAALQGLRSVT------DLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR 282
                 +LQ   +           L    +   +      +LS++K+      +  +   
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 283 GALAG--LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV-----AVSGASLAH 335
               G  L  +T           ++   F     + +L++ +  I           S   
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 336 LSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE 378
           L +L    + +       + L +    +    L  +D      
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 42/286 (14%), Positives = 93/286 (32%), Gaps = 17/286 (5%)

Query: 104 LSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGL-PNNLLSVVPTSA 162
              + +LP   L    +  L + S  +K     +    ++ +  L   PN+L SV    +
Sbjct: 158 FRQLDLLPVAHLHLSCIL-LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216

Query: 163 LAPLAP-NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL------ 215
           +  L    L  + L+     +L     +       L+++   + T  +  +         
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 216 ----VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
               + +  L +           +   L+S+    + + +       +     + + +  
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK-EALYSVFAEMNIKM 335

Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
           ++ +    +           T L+   N            L  L  L L  N +      
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 332 S--LAHLSNLTTLDLSHNFLRALTQDLITPL-KSLQELRLDDNDIS 374
           +    ++S+L TLD+S N L +   D      +S+  L L  N ++
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 53/322 (16%), Positives = 96/322 (29%), Gaps = 44/322 (13%)

Query: 111 PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNL 170
              FL    L  L +S   L+NIS        + L+ L L  N   V+P          L
Sbjct: 93  FHVFLFNQDLEYLDVSHNRLQNISCCPM----ASLRHLDLSFNDFDVLPVCKEFGNLTKL 148

Query: 171 DRLDLSHNQLYKLENTSFKGLS-SLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
             L LS  +  +L+      L  S   LDL    +     + L    T   L L  +  +
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV-LHLVFHPNS 207

Query: 230 VSVVAALQGLRSVTDLDLS------------HNLLAGPLGPSTVPRL------------- 264
           +  V     + ++  L LS               L+      T+  +             
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267

Query: 265 --------SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC-----HHNQIDVLEDHSFRA 311
                     ++ L+I +   +           +    S       +      ++  +  
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327

Query: 312 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
            + ++   L+ +    +        S+ T L+ + N          + LK LQ L L  N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 372 DISMEPECIYVGFNTMDLELIY 393
            +    +   +  N   LE + 
Sbjct: 388 GLKNFFKVALMTKNMSSLETLD 409

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 31/131 (23%), Positives = 56/131 (42%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
              +L L++N            +L  L+ ++ ++N+ + +  GA  G   +  +    N+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
           ++ ++   F+ L +L  L L  NRI  V   S   LS++  L L  N +  +       L
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 361 KSLQELRLDDN 371
            SL  L L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 85.5 bits (212), Expect = 4e-19
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 25/163 (15%)

Query: 140 GLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL 199
            +      L L NN  +V+  + +    P L +++ S+N++  +E  +F+G S +N + L
Sbjct: 29  HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88

Query: 200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS 259
           + N+L  +       L +L+ L L+ NR+T                          +G  
Sbjct: 89  TSNRLENVQHKMFKGLESLKTLMLRSNRITC-------------------------VGND 123

Query: 260 TVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
           +   LSS+++LS+  NQ ++V  GA   L  L++L+   N  +
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
           P  +P       L + +N+F+ +   G    L +L  ++  +N+I  +E+ +F   S ++
Sbjct: 27  PEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84

Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME 376
            + L  NR+  V       L +L TL L  N +  +  D    L S++ L L DN I+  
Sbjct: 85  EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144

Query: 377 PE 378
             
Sbjct: 145 AP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 112 GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD 171
           G F +   L  +  S+ ++ +I +GAF G S  +  + L +N L  V       L  +L 
Sbjct: 51  GIFKKLPQLRKINFSNNKITDIEEGAFEGASG-VNEILLTSNRLENVQHKMFKGL-ESLK 108

Query: 172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN 226
            L L  N++  + N SF GLSS+  L L  N++ T++      L +L  L L  N
Sbjct: 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
            S +  + +  N+  +V+     GL+ L +L    N+I  + + SF  
Sbjct: 80  ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG 127

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L SLK L +  N+ + V   +  GL  +  LS + NQI  +   +F  
Sbjct: 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 95.0 bits (236), Expect = 2e-21
 Identities = 58/276 (21%), Positives = 99/276 (35%), Gaps = 28/276 (10%)

Query: 68  LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG------KFLEGVTLH 121
           L + L+    ++DL   ++ ++ L      SL   T+    +         + L    L 
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSL------SLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 122 GLVISSGELKNISDGAFIGLSSP-LQALGLPNNLLSVVP---TSALAPLAPNLDRLDLSH 177
            L + + E+   +    +  + P L  L L N   +            L P L  L ++ 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 178 NQLYKLENTSFKGLSSLNFLDLSYNKLMT----LSQDCLAPLVTLRVLRLQGNRLT---V 230
                      +   +L+ LDLS N  +     +S  C     TL+VL L+   +     
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
              A       +  LDLSHN L    G  +    S L  L+++      V +G  A   K
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---K 275

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326
           L+ L   +N++D         L  + +L L  N  +
Sbjct: 276 LSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 94.6 bits (235), Expect = 2e-21
 Identities = 62/314 (19%), Positives = 106/314 (33%), Gaps = 21/314 (6%)

Query: 73  RCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKN 132
            C+ N SD      S         V L     S   +L     E        I      +
Sbjct: 12  SCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL--S 69

Query: 133 ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLS 192
           +          P + L     +L +     L      L+ L+++      L   +   L+
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQEL-----TLENLEVTGTAPPPLLEATGPDLN 124

Query: 193 SLNFLDLSYNKLMTLSQDCLAPLVT-LRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
            LN  ++S+        +    L   L+VL +            ++   +++ LDLS N 
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 252 LAG--PLGPSTVP-RLSSLKVLSIAHNQFSS---VRRGALAGLDKLTSLSCHHNQI-DVL 304
             G   L  +  P +  +L+VL++ +    +   V     A   +L  L   HN + D  
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
              S    S L+ L+L+   +  V        + L+ LDLS+N L          L  + 
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN--PSPDELPQVG 299

Query: 365 ELRLDDNDISMEPE 378
            L L  N   ++ E
Sbjct: 300 NLSLKGNPF-LDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 6e-15
 Identities = 46/237 (19%), Positives = 69/237 (29%), Gaps = 13/237 (5%)

Query: 166 LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG 225
           L   L R+D   +     +      L  L          +      +  +  L+ L L+ 
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 226 NRLT--VSVVAALQGLRSVTDLDLSHNLLAGP---LGPSTVPRLSSLKVLSIAHNQFSSV 280
             +T              +  L+L +   A     L          LKVLSIA     + 
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 281 RRGALAGLDKLTSLSCHHNQI-------DVLEDHSFRALSTLSHLDLAHNRIVAVSGASL 333
               +     L++L    N           L    F  L  L+  +        V  A  
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 334 AHLSNLTTLDLSHNFLRALTQDLI-TPLKSLQELRLDDNDISMEPECIYVGFNTMDL 389
           A    L  LDLSHN LR             L  L L    +   P+ +    + +DL
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL 281

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 31/206 (15%), Positives = 62/206 (30%), Gaps = 28/206 (13%)

Query: 190 GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV---VAALQGLRSVTDLD 246
           G S    L     +        +   ++L+ L ++  R+   +      + G+  + +L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 247 LSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 305
           L +  + G   P  +      L +L++ +  ++       A L +L              
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWA----TRDAWLAELQQWL---------- 147

Query: 306 DHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT----PLK 361
                    L  L +A    +  S   +     L+TLDLS N        +         
Sbjct: 148 ------KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201

Query: 362 SLQELRLDDNDISMEPECIYVGFNTM 387
           +LQ L L +  +              
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAAR 227

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 27/178 (15%)

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
           ++LDL    L  L + +F+GL+ L +L+L YN+L TLS      L  L  L L  N+L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAHNQFSSVRRGALAGLD 289
                     S+               P  V   L+ L  L +  NQ  S+  G    L 
Sbjct: 97  ----------SL---------------PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131

Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           KL  L  + NQ+  +   +F  L+ L  L L+ N++ +V   +   L  L T+ L  N
Sbjct: 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
           + L L +  L+ +  +    L   L  L+L +NQL  L    F  L+ L  L L+ N+L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP--- 262
           +L       L  L  L L GN+L          L  + +L L+ N L       ++P   
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL------QSIPAGA 150

Query: 263 --RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
             +L++L+ LS++ NQ  SV  GA   L KL +++   NQ D
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 1/136 (0%)

Query: 243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID 302
             LDL    LA  L  +T   L+ L  L++ +NQ  ++  G    L +L +L   +NQ+ 
Sbjct: 38  EKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 303 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKS 362
            L    F  L+ L  L L  N++ ++       L+ L  L L+ N L+++       L +
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 363 LQELRLDDNDISMEPE 378
           LQ L L  N +   P 
Sbjct: 157 LQTLSLSTNQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 100 LDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV 158
           L    + +  LP G F     L  L +   +LK++  G F  L+  L+ L L  N L  +
Sbjct: 88  LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-LKELRLNTNQLQSI 146

Query: 159 PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
           P  A   L  NL  L LS NQL  + + +F  L  L  + L  N
Sbjct: 147 PAGAFDKLT-NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.3 bits (230), Expect = 1e-20
 Identities = 58/314 (18%), Positives = 106/314 (33%), Gaps = 30/314 (9%)

Query: 79  SDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAF 138
           + L    + L   +             N      +            +   LK  +D   
Sbjct: 23  TALRPYHDVLSQWQ------RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76

Query: 139 IGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLD 198
                   AL L +  L   P      L+ +L  + +    L +L + + +  + L  L 
Sbjct: 77  DATQPGRVALELRSVPLPQFPDQ-AFRLS-HLQHMTIDAAGLMELPD-TMQQFAGLETLT 133

Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQG-NRLT--------VSVVAALQGLRSVTDLDLSH 249
           L+ N L  L    +A L  LR L ++    LT               QGL ++  L L  
Sbjct: 134 LARNPLRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHS 308
             +     P+++  L +LK L I ++  S++   A+  L KL  L       +       
Sbjct: 193 TGIRSL--PASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPP-I 248

Query: 309 FRALSTLSHLDLAH-NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ--DLITPLKSLQE 365
           F   + L  L L   + ++ +    +  L+ L  LDL       L++   LI  L +   
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGC--VNLSRLPSLIAQLPANCI 305

Query: 366 LRLDDNDISMEPEC 379
           + +  +  +   + 
Sbjct: 306 ILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 7e-16
 Identities = 51/283 (18%), Positives = 92/283 (32%), Gaps = 21/283 (7%)

Query: 86  ESLRGLEPDERVSLLDCTLSNVTVLPG--KFLEGVTLHGLVISSGELKNISDGAFIGLSS 143
            S           +   T   +       +         L + S  L    D       S
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQ--AFRLS 104

Query: 144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY-N 202
            LQ + +    L  +P + +      L+ L L+ N L  L   S   L+ L  L +    
Sbjct: 105 HLQHMTIDAAGLMELPDT-MQQF-AGLETLTLARNPLRALPA-SIASLNRLRELSIRACP 161

Query: 203 KLMTL--------SQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG 254
           +L  L        +      LV L+ LRL+   +  S+ A++  L+++  L + ++ L+ 
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220

Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLS-CHHNQIDVLEDHSFRALS 313
            L    +  L  L+ L +              G   L  L     + +  L       L+
Sbjct: 221 -L-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLT 277

Query: 314 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDL 356
            L  LDL     ++   + +A L     + +  +    L Q  
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.4 bits (155), Expect = 6e-11
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 9/168 (5%)

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
           M  S            L  QG+         L   +   + D +                
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN-----RWHSAWRQANS 55

Query: 265 SSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
           ++ ++ +       +       A      +L      +    D     LS L H+ +   
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAA 114

Query: 324 RIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
            ++ +   ++   + L TL L+ N LRAL    I  L  L+EL +   
Sbjct: 115 GLMELP-DTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRAC 160

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.9 bits (216), Expect = 8e-20
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 9/157 (5%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           L  + L N  ++ +  + +     N+  L +++            GLS+L  L +    +
Sbjct: 46  LTYITLANINVTDL--TGIEYA-HNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDV 100

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL 264
            +     L+ L +L +L +  +    S++  +  L  V  +DLS+N          +  L
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--DIMPLKTL 158

Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
             LK L+I  +     R   +    KL  L      I
Sbjct: 159 PELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.9 bits (216), Expect = 9e-20
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 10/159 (6%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
            +L  + L++  +  L     +   ++  L ++       +   ++ L  L  LR+ G  
Sbjct: 44  NSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKD 99

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN-QFSSVRRGALA 286
           +T   +  L GL S+T LD+SH+        + +  L  +  + +++N   + +    L 
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITDIM--PLK 156

Query: 287 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI 325
            L +L SL+   + +             L+ L      I
Sbjct: 157 TLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 34/208 (16%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
                            N +   ++SL ++ L+   +  L+   +     ++ L +    
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
            T                + +      P+       LS+L+ L I     +S +   L+G
Sbjct: 78  AT----------------NYN------PISG-----LSNLERLRIMGKDVTSDKIPNLSG 110

Query: 288 LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN-RIVAVSGASLAHLSNLTTLDLSH 346
           L  LT L   H+  D         L  ++ +DL++N  I  +    L  L  L +L++  
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQF 168

Query: 347 NFLRALTQDLITPLKSLQELRLDDNDIS 374
           + +       I     L +L      I 
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTIG 194

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.9 bits (216), Expect = 3e-18
 Identities = 56/276 (20%), Positives = 98/276 (35%), Gaps = 49/276 (17%)

Query: 141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE----NTSFKGLSSLNF 196
           +S  +Q+L +    LS    + L PL      + L    L +      +++ +   +L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 197 LDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTV----SVVAALQGLRSVTDLDL 247
           L+L  N+L       + Q    P   ++ L LQ   LT      + + L+ L ++ +L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 248 SHNLLAGPLGPSTVPRLS--------SLKVLSIAHNQFSSVRRGALA----GLDKLTSLS 295
           S N     LG + +  L          L+ L + +   S+     LA           L+
Sbjct: 121 SDN----LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 296 CHHNQIDVLEDHSFRALS--------TLSHLDLAHNRIVAVSGASLA----HLSNLTTLD 343
             +N I    +   R L          L  L L    + + +   L       ++L  L 
Sbjct: 177 VSNNDI---NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 344 LSHNFL-----RALTQDLITPLKSLQELRLDDNDIS 374
           L  N L       L   L+ P   L+ L + +  I+
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.9 bits (216), Expect = 3e-18
 Identities = 63/278 (22%), Positives = 95/278 (34%), Gaps = 53/278 (19%)

Query: 145 LQALGLPNNLLSVVPTSALAPL----APNLDRLDLSHNQL----YKLENTSFKGLSSLNF 196
            + L + NN ++      L          L+ L L    +     +         +SL  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 197 LDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT----VSVVAALQGLRSVTDLDL 247
           L L  NKL       L    L P   LR L +    +T      +   L+   S+ +L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 248 SHNLLAGPLGPSTVPRLS--------SLKVLSIAHNQFSSVRRGALA-GLDK---LTSLS 295
           + N     LG      L          L+ L +    F++      +  L +   L  L 
Sbjct: 292 AGN----ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 296 CHHNQIDVLEDHSFRALS--------TLSHLDLAHNRIVAVSGASLA----HLSNLTTLD 343
             +N++   ED   R L          L  L LA   +   S +SLA       +L  LD
Sbjct: 348 ISNNRL---EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404

Query: 344 LSHNFL-----RALTQDLITPLKSLQELRLDDNDISME 376
           LS+N L       L + +  P   L++L L D   S E
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.1 bits (206), Expect = 6e-17
 Identities = 60/276 (21%), Positives = 89/276 (32%), Gaps = 49/276 (17%)

Query: 145 LQALGLPNNLLSVVPTSALAPLA----PNLDRLDLSHNQLYKLENTSF----KGLSSLNF 196
           LQ L L +NLL       L          L++L L +  L            +       
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 197 LDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT----VSVVAALQGLRSVTDLDL 247
           L +S N +       L Q        L  L+L+   +T      +   +    S+ +L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 248 SHNLL----AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG------ALAGLDKLTSLSCH 297
             N L       L P  +   S L+ L I     ++  +G       L   + L  LS  
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA--KGCGDLCRVLRAKESLKELSLA 292

Query: 298 HNQIDVLEDHSFRALS--------TLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLS 345
            N++    D   R L          L  L +      A   +  +        L  L +S
Sbjct: 293 GNEL---GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 346 HNFL-----RALTQDLITPLKSLQELRLDDNDISME 376
           +N L     R L Q L  P   L+ L L D D+S  
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 52/255 (20%), Positives = 85/255 (33%), Gaps = 56/255 (21%)

Query: 145 LQALGLPNNLLSVVPTSALAP--LAPN--LDRLDLSHNQLYKLENTSFKGLS-------S 193
           L+ L L +N L  V  + L P  L P+  L  L +    +          L        S
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI---TAKGCGDLCRVLRAKES 285

Query: 194 LNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT----VSVVAALQGLRSVTD 244
           L  L L+ N+L       L +  L P   L  L ++    T        + L   R + +
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 245 LDLSHNLL----AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           L +S+N L       L        S L+VL +A    S       +    L +       
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD------SSCSSLAA------- 392

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRI-----VAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
                  +  A  +L  LDL++N +     + +  +       L  L L   +     +D
Sbjct: 393 -------TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445

Query: 356 LITPL----KSLQEL 366
            +  L     SL+ +
Sbjct: 446 RLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 291 LTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLS 345
           + SL     ++ D         L     + L    +       ++        L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 346 HNFL-----RALTQDLITPLKSLQELRLDDNDISME 376
            N L       + Q L TP   +Q+L L +  ++  
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.5 bits (210), Expect = 6e-18
 Identities = 53/250 (21%), Positives = 96/250 (38%), Gaps = 28/250 (11%)

Query: 139 IGLSSPLQALGLPNNLLSVVPT--SALAPLAPNLDRLDLSH-NQLYKLENTSFKGLSSLN 195
              +  +  L L    L       S+LA L P L+ L +   N L      +   L+ L+
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 196 FLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
           +L +++  +       LSQ     + TL  L    N L+ ++  ++  L ++  +    N
Sbjct: 105 YLYITHTNVSGAIPDFLSQ-----IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 251 LLAGPLGPSTVPRLSSL-KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH-- 307
            ++G + P +    S L   ++I+ N+ +       A L  L  +    N    LE    
Sbjct: 160 RISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM---LEGDAS 214

Query: 308 -SFRALSTLSHLDLAHNRIVAVSGA--SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
             F +      + LA N +   +     +    NL  LDL +N +       +T LK L 
Sbjct: 215 VLFGSDKNTQKIHLAKNSL---AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 365 ELRLDDNDIS 374
            L +  N++ 
Sbjct: 272 SLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.0 bits (188), Expect = 4e-15
 Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 36/225 (16%)

Query: 139 IGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYKLENT-----SFKGLS 192
           I   + L  L + +  +S  +P   L+ +   L  LD S+N L     +     S   L 
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDF-LSQI-KTLVTLDFSYNAL-----SGTLPPSISSLP 149

Query: 193 SLNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL 247
           +L  +    N++      +      + L T   + +  NRLT  +      L ++  +DL
Sbjct: 150 NLVGITFDGNRISGAIPDSYGS--FSKLFT--SMTISRNRLTGKIPPTFANL-NLAFVDL 204

Query: 248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA---LAGLDKLTSLSCHHNQIDVL 304
           S N+L G           + + + +A N  +         +     L  L   +N+I   
Sbjct: 205 SRNMLEGDA-SVLFGSDKNTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRNNRIYGT 259

Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGA--SLAHLSNLTTLDLSHN 347
                  L  L  L+++ N +    G      +L        ++N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNL---CGEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 28/217 (12%)

Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL---MTLSQDCLAPLVTLRVLRLQG-NRL 228
            D  +     +   +      +N LDLS   L     +    LA L  L  L + G N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNL 89

Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG----A 284
              +  A+  L  +  L ++H  ++G + P  + ++ +L  L  ++N  S    G    +
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALS----GTLPPS 144

Query: 285 LAGLDKLTSLSCHHNQIDVLEDH---SFRALSTLS-HLDLAHNRIVAVSG---ASLAHLS 337
           ++ L  L  ++   N+   +      S+ + S L   + ++ NR+   +G    + A+L 
Sbjct: 145 ISSLPNLVGITFDGNR---ISGAIPDSYGSFSKLFTSMTISRNRL---TGKIPPTFANL- 197

Query: 338 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           NL  +DLS N L      L    K+ Q++ L  N ++
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 138 FIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNF 196
           +   S    ++ +  N L+  +P +  A L  NL  +DLS N L    +  F    +   
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPT-FANL--NLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 197 LDLSYNKLM-TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP 255
           + L+ N L   L +  +     L  L L+ NR+  ++   L  L+ +  L++S N L G 
Sbjct: 226 IHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 256 LGPSTVPRLSSLKVLSIAHN 275
           + P     L    V + A+N
Sbjct: 284 I-PQG-GNLQRFDVSAYANN 301

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 82.8 bits (205), Expect = 9e-18
 Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 7/201 (3%)

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
            + +L    +      +   L+S++ +  + + + ++    +  L  +R L L GN+L  
Sbjct: 22  IKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77

Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
             ++AL+ L ++T L L+ N L   L      +L++LK L +  NQ  S+  G    L  
Sbjct: 78  --ISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           LT L+  HNQ+  L    F  L+ L+ LDL++N++ ++       L+ L  L L  N L+
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 351 ALTQDLITPLKSLQELRLDDN 371
           ++   +   L SLQ + L DN
Sbjct: 195 SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 10/204 (4%)

Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
            +    +VT       E  ++  ++ ++ ++K  S      L + ++ L L  N L  + 
Sbjct: 24  ANLKKKSVTDAVT-QNELNSIDQIIANNSDIK--SVQGIQYLPN-VRYLALGGNKLHDIS 79

Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
             AL  L  NL  L L+ NQL  L N  F  L++L  L L  N+L +L       L  L 
Sbjct: 80  --ALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136

Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHN-LLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
            L L  N+L          L ++T+LDLS+N L + P G     +L+ LK L +  NQ  
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG--VFDKLTQLKDLRLYQNQLK 194

Query: 279 SVRRGALAGLDKLTSLSCHHNQID 302
           SV  G    L  L  +  H N  D
Sbjct: 195 SVPDGVFDRLTSLQYIWLHDNPWD 218

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
                +L    +       T   L+S+  +   ++   SV    +  L  +  L+   N+
Sbjct: 20  ETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNK 74

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
           +  +   + + L+ L++L L  N++ ++       L+NL  L L  N L++L   +   L
Sbjct: 75  LHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132

Query: 361 KSLQELRLDDNDI 373
            +L  L L  N +
Sbjct: 133 TNLTYLNLAHNQL 145

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 50/296 (16%), Positives = 85/296 (28%), Gaps = 67/296 (22%)

Query: 145 LQALGLPNNLLSVVPTSALAPL---APNLDRLDLSHNQLYKLENTSFKGL---------- 191
           ++ + L  N +       L+       +L+  + S     ++++   + L          
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 192 SSLNFLDLSYNKLMTLSQDCLAPL----VTLRVLRLQGNRLTVSVVAAL----------- 236
             L+ + LS N     +Q+ L         L  L L  N L     A +           
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 237 --QGLRSVTDLDLSHNLL----AGPLGPSTVPRLSSLKVLSIAHNQF-----SSVRRGAL 285
             +    +  +    N L           T      L  + +  N         +    L
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWA-KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 286 AGLDKLTSLSCHHNQI---------DVLEDHSFRALSTLSHLDLAHNRI-----VAVSGA 331
           A   +L  L    N             L+         L  L L    +      AV  A
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWP-----NLRELGLNDCLLSARGAAAVVDA 267

Query: 332 SLAHLSN--LTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDISMEPECI 380
             + L N  L TL L +N +     R L   +   +  L  L L+ N  S E + +
Sbjct: 268 -FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 322

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 48/272 (17%), Positives = 86/272 (31%), Gaps = 58/272 (21%)

Query: 145 LQALGLPNNLLSVVPTSALA-PLA--PNLDRLDLSHNQL---------YKLENTSFKGLS 192
           ++   L  + ++     ++   L    ++  + LS N +           + +   K L 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK--KDLE 63

Query: 193 SLNFLDLSYNKLMTLSQDCLAPLV-------TLRVLRLQGNRLTV----SVVAALQGLRS 241
              F D+   ++     + L  L+        L  +RL  N         ++  L     
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI 301
           +  L L +N L GP                IA                 L S+ C  N++
Sbjct: 124 LEHLYLHNNGL-GPQA-----------GAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 302 DVLEDHSFRALS-------TLSHLDLAHNRI-----VAVSGASLAHLSNLTTLDLSHNFL 349
              E+ S +  +        L  + +  N I       +    LA+   L  LDL  N  
Sbjct: 172 ---ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 350 -----RALTQDLITPLKSLQELRLDDNDISME 376
                 AL    +    +L+EL L+D  +S  
Sbjct: 229 THLGSSALA-IALKSWPNLRELGLNDCLLSAR 259

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 76.7 bits (189), Expect = 6e-16
 Identities = 44/132 (33%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
             L L  NQ+ KLE   F  L +L  L L  N+L  L       L  L VL L  N+LTV
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
              A    L  + +L +  N L     P  + RL+ L  L++  NQ  S+  GA   L  
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 291 LTSLSCHHNQID 302
           LT      N  D
Sbjct: 161 LTHAYLFGNPWD 172

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
           P+ +P  ++ ++L +  NQ + +  G    L  L  L    NQ+  L    F +L+ L+ 
Sbjct: 35  PAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92

Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP 377
           LDL  N++  +  A    L +L  L +  N L  L    I  L  L  L LD N +   P
Sbjct: 93  LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIP 151

Query: 378 E 378
            
Sbjct: 152 H 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
           L +   ++  +  G F  L + L+ L L +N L  +P      L   L  LDL  NQL  
Sbjct: 45  LYLHDNQITKLEPGVFDSLIN-LKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTNQLTV 102

Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
           L +  F  L  L  L +  NKL  L    +  L  L  L L  N+L      A   L S+
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 243 TDLDLSHN 250
           T   L  N
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           +   L L  N +   L P     L +LK L +  NQ  ++  G    L +LT L    NQ
Sbjct: 41  NAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
           + VL    F  L  L  L +  N++  +    +  L++LT L L  N L+++       L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 361 KSLQELRLDDN 371
            SL    L  N
Sbjct: 159 SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSIAH 274
              ++L L  N++T         L ++ +L L  N L     P  V   L+ L VL +  
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL--PVGVFDSLTQLTVLDLGT 97

Query: 275 NQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA 334
           NQ + +       L  L  L    N++  L       L+ L+HL L  N++ ++   +  
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 335 HLSNLTTLDLSHN 347
            LS+LT   L  N
Sbjct: 157 RLSSLTHAYLFGN 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH 322
            L + K L+++ N    +   +L+G++ L  LS   N I  +E+       TL  L +++
Sbjct: 46  TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAV-ADTLEELWISY 102

Query: 323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDN 371
           N+I ++SG  +  L NL  L +S+N +    + D +  L  L++L L  N
Sbjct: 103 NQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 20/187 (10%)

Query: 170 LDRLDLSHNQLYKLENTSFKGLSSLNFLDL--SYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
           + +     + +   E       +    ++L      +  +    L+ L   + L L  N 
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNN 59

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
           +    +++L G+ ++  L L  NL+        V    +L+ L I++NQ +S+    +  
Sbjct: 60  IE--KISSLSGMENLRILSLGRNLIKKIENLDAV--ADTLEELWISYNQIASLS--GIEK 113

Query: 288 LDKLTSLSCHHNQIDVLED-HSFRALSTLSHLDLAHNRIVAVSGAS----------LAHL 336
           L  L  L   +N+I    +     AL  L  L LA N +      +          +  L
Sbjct: 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173

Query: 337 SNLTTLD 343
            NL  LD
Sbjct: 174 PNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 17/138 (12%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLV-TLRVLRLQGN 226
                L LS N + K+ +    G+ +L  L L  N +  +    L  +  TL  L +  N
Sbjct: 48  KACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIEN--LDAVADTLEELWISYN 103

Query: 227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV------ 280
           ++  + ++ ++ L ++  L +S+N +        +  L  L+ L +A N   +       
Sbjct: 104 QI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161

Query: 281 ----RRGALAGLDKLTSL 294
               R   +  L  L  L
Sbjct: 162 TSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 7e-11
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFL 349
           +   L      I+ + D +   L    HL L+ N I  +S   L+ + NL  L L  N +
Sbjct: 26  EKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLI 82

Query: 350 RALTQDLITPLKSLQELRLDDNDIS 374
           + +  +L     +L+EL +  N I+
Sbjct: 83  KKIE-NLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           L+ L L  NL+  +    L  +A  L+ L +S+NQ+  L     + L +L  L +S NK+
Sbjct: 72  LRILSLGRNLIKKI--ENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKI 127

Query: 205 MTLSQ-DCLAPLVTLRVLRLQGNRLT 229
               + D LA L  L  L L GN L 
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 264 LSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
            +  + + + H     + +    L+ L     L+   N I+ +       +  L  L L 
Sbjct: 22  ATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLG 78

Query: 322 HNRIVAVSGASLAHLSN-LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
            N I  +    L  +++ L  L +S+N + +L    I  L +L+ L + +N I+
Sbjct: 79  RNLIKKIEN--LDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKIT 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL 304
           + L+  L+               + L +   +   +     A LD+  ++    N+I  L
Sbjct: 2   VKLTAELIEQAAQ---YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL 57

Query: 305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSL 363
           +   F  L  L  L + +NRI  +       L +LT L L++N L  L   D +  LKSL
Sbjct: 58  DG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 364 QELRLDDNDISMEPE 378
             L +  N ++ +  
Sbjct: 116 TYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 14/153 (9%)

Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV--SVVAALQGLRSVTDLDLSHNLLAG 254
           + L+   +   +Q      V  R L L+G ++ V  ++ A L    +   +D S N +  
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQFDA---IDFSDNEIR- 55

Query: 255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALS 313
            L     P L  LK L + +N+   +  G    L  LT L   +N +  L D     +L 
Sbjct: 56  KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113

Query: 314 TLSHLDLAHNRIVAVSG---ASLAHLSNLTTLD 343
           +L++L +  N +          +  +  +  LD
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
            + L L    + V+    L       D +D S N++ KL+   F  L  L  L ++ N++
Sbjct: 21  DRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRI 76

Query: 205 MTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHN 250
             + +     L  L  L L  N L  +  +  L  L+S+T L +  N
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
               LDL   ++  +EN     L   + +D S N++  L  D    L  L+ L +  NR+
Sbjct: 20  RDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRI 76

Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV---RRGAL 285
                   Q L  +T+L L++N L        +  L SL  L I  N  ++    R   +
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 136

Query: 286 AGLDKLTSL 294
             + ++  L
Sbjct: 137 YKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 10/103 (9%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
             A+   +N +  +       L   L  L +++N++ ++     + L  L  L L+ N L
Sbjct: 44  FDAIDFSDNEIRKLDG--FPLL-RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 205 MTLSQ-DCLAPLVTLRVLRLQGNRLT------VSVVAALQGLR 240
           + L   D LA L +L  L +  N +T      + V+  +  +R
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 143

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 44/133 (33%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
             LDL  N L  L N  F  L+SL  L L  NKL +L       L +L  L L  N+L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 231 SVVAALQGLRSVTDLDLSHN-LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289
                   L  + +L L+ N L + P G     +L+ LK L +  NQ  SV  G    L 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDG--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148

Query: 290 KLTSLSCHHNQID 302
            L  +  H N  D
Sbjct: 149 SLQYIWLHDNPWD 161

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
           P+ +P  +    L +  N   S+  G    L  LT L    N++  L +  F  L++L++
Sbjct: 23  PTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80

Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           L+L+ N++ ++       L+ L  L L+ N L++L   +   L  L++LRL  N
Sbjct: 81  LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.8 bits (148), Expect = 9e-11
 Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
             T LDL  N L   L       L+SL  L +  N+  S+  G    L  LT L+   NQ
Sbjct: 29  QTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPL 360
           +  L +  F  L+ L  L L  N++ ++       L+ L  L L  N L+++   +   L
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147

Query: 361 KSLQELRLDDN 371
            SLQ + L DN
Sbjct: 148 TSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 2/128 (1%)

Query: 123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK 182
           L + +  LK++ +G F  L+S L  L L  N L  +P      L  +L  L+LS NQL  
Sbjct: 33  LDLETNSLKSLPNGVFDELTS-LTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQLQS 90

Query: 183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV 242
           L N  F  L+ L  L L+ N+L +L       L  L+ LRL  N+L          L S+
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 243 TDLDLSHN 250
             + L  N
Sbjct: 151 QYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 1/132 (0%)

Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
                L L+ N L          L S+T L L  N L   L      +L+SL  L+++ N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTN 86

Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
           Q  S+  G    L +L  L+ + NQ+  L D  F  L+ L  L L  N++ +V       
Sbjct: 87  QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146

Query: 336 LSNLTTLDLSHN 347
           L++L  + L  N
Sbjct: 147 LTSLQYIWLHDN 158

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 4/118 (3%)

Query: 263 RLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
             S +K L + +++ +  +  G     ++L  LS  +  +  + +     L+ L  L+L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELS 72

Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMEPE 378
            NR+            NLT L+LS N ++ L+  + +  L++L+ L L + +++   +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
           S ++ L L N+  +      L      L+ L   +  L  + N     L+ L  L+LS N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDN 74

Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHN 250
           ++    +        L  L L GN++  +S +  L+ L ++  LDL + 
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC 296
           +    V +L L ++                L+ LS  +   +S+    L  L+KL  L  
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLEL 71

Query: 297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHN 347
             N++    +        L+HL+L+ N+I  +S    L  L NL +LDL + 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 217 TLRVLRLQGNRLTV-SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
            ++ L L  +R     +         +  L   +  L      + +P+L+ LK L ++ N
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN 74

Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTLSHLDLAHNRIVAVSG---A 331
           + S            LT L+   N+I  L      + L  L  LDL +  +  ++     
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134

Query: 332 SLAHLSNLTTLD 343
               L  LT LD
Sbjct: 135 VFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 115 LEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD 174
           ++ + L     + G+L+ ++D         L+ L   N  L+ +  + L  L   L +L+
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDE----FEE-LEFLSTINVGLTSI--ANLPKL-NKLKKLE 70

Query: 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLT---- 229
           LS N++        +   +L  L+LS NK+  LS  + L  L  L+ L L    +T    
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 230 --VSVVAALQGLR 240
              +V   L  L 
Sbjct: 131 YRENVFKLLPQLT 143

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
           LD S +   KLE         L FL      L +++   L  L  L+ L L  NR++  +
Sbjct: 24  LDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGL 80

Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV---RRGALAGLD 289
               +   ++T L+LS N +        + +L +LK L + + + +++   R      L 
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140

Query: 290 KLTSL 294
           +LT L
Sbjct: 141 QLTYL 145

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.2 bits (184), Expect = 3e-14
 Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 17/207 (8%)

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC--LAPLVTLRVLRLQGNRL 228
                S  +L +LE  +   L ++  L  + + L+   +     + L  +  +R      
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424

Query: 229 TVSVVAALQGL-----RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
             S       +       V  L L+H  L          +L  +  L ++HN+  ++   
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE---QLLLVTHLDLSHNRLRALPPA 481

Query: 284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTL 342
            LA L  L  L    N ++ ++      L  L  L L +NR+   +    L     L  L
Sbjct: 482 -LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

Query: 343 DLSHNFLR---ALTQDLITPLKSLQEL 366
           +L  N L     + + L   L S+  +
Sbjct: 539 NLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.3 bits (174), Expect = 5e-13
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
            ++  L L+H  L  L +   + L  +  LDLS+N+L  L    LA L  L VL+   N 
Sbjct: 441 ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA 497

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
           L    V  +  L  + +L L +N L        +     L +L++  N    
Sbjct: 498 LEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 2e-12
 Identities = 45/215 (20%), Positives = 75/215 (34%), Gaps = 34/215 (15%)

Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
            L R +LS  +   L++              S  +L  L  +    L+T+ +L ++    
Sbjct: 350 QLFRCELSVEKSTVLQS-----------ELESCKELQELEPENKWCLLTI-ILLMRALDP 397

Query: 229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGL 288
            +     LQ   ++  +D                       L    ++F           
Sbjct: 398 LLYEKETLQYFSTLKAVDPMR-----------------AAYLDDLRSKFLLENSVLKMEY 440

Query: 289 DKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNF 348
             +  L   H  + VL       L  ++HLDL+HNR+ A+   +LA L  L  L  S N 
Sbjct: 441 ADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA 497

Query: 349 LRALTQDLITPLKSLQELRLDDNDISMEPECIYVG 383
           L  +  D +  L  LQEL L +N +        + 
Sbjct: 498 LENV--DGVANLPRLQELLLCNNRLQQSAAIQPLV 530

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 55/287 (19%), Positives = 102/287 (35%), Gaps = 50/287 (17%)

Query: 137 AFIGLSSPLQALGLPNNLLSVVPTSALAPL----APNLDRLDLSHNQLYK-----LENTS 187
            F  +   + +L L  N L  + T  L         ++  L+LS N L       L    
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 188 FKGLSSLNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLTVSVVAAL-QGLR- 240
               +++  L+LS N L       L +   A   T+ VL L  N  +    +   Q    
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 241 ---SVTDLDLSHNLL----AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK--- 290
              S+T L+L  N L    +  L        +++  L++  N  +S     LA       
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 291 --LTSLSCHHNQIDVLEDHSFRALS--------TLSHLDLAHNRIVAVSGASLA----HL 336
             +TSL    N +      S+  L+         +  L+L  N +   S  +L      L
Sbjct: 196 ASVTSLDLSANLLG---LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 337 SNLTTLDLSHNFLRALTQDLITPL-------KSLQELRLDDNDISME 376
            +L T+ L ++ ++ ++++    L       + +  +  +  +I   
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 69.0 bits (169), Expect = 8e-14
 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 4/118 (3%)

Query: 263 RLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA 321
             ++++ L + + + +  +  G  A    L  LS  +  +  + +     L  L  L+L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79

Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-DLITPLKSLQELRLDDNDISMEPE 378
            NRI          L NLT L+LS N L+ ++  + +  L+ L+ L L + +++   +
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 217 TLRVLRLQGNRLTVSVVAALQG-LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
            +R L L   +     +  L     ++  L L +  L        +P+L  LK L ++ N
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSEN 81

Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTLSHLDLAHNRIVAVSG---A 331
           +           L  LT L+   N++  +      + L  L  LDL +  +  ++    +
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141

Query: 332 SLAHLSNLTTLD 343
               L  LT LD
Sbjct: 142 VFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           L+ L L N  L  V  S L  L P L +L+LS N+++   +   + L +L  L+LS NKL
Sbjct: 51  LEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 205 MTLSQ-DCLAPLVTLRVLRLQGNRLT------VSVVAALQGLR 240
             +S  + L  L  L+ L L    +T       SV   L  L 
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.5 bits (177), Expect = 8e-14
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 284 ALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL 342
            L G + LT L   + Q +  LE    R L  L +L +  + +  V+  +      L+ L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 343 DLSHNFLRALTQDLITPLKSLQELRLDDN 371
           +LS N L +L+   +  L SLQEL L  N
Sbjct: 86  NLSFNALESLSWKTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.5 bits (177), Expect = 9e-14
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 258 PSTVPRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
              +P   +L  L I + Q    +    L GL +L +L+   + +  +   +F     LS
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
            L+L+ N + ++S  ++  LS L  L LS N L 
Sbjct: 84  RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 70.2 bits (171), Expect = 4e-13
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 226 NRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL 285
               +  +  L G  ++T+L + +      L    +  L  L+ L+I  +    V   A 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326
               +L+ L+   N ++ L   + + LS L  L L+ N + 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 69.0 bits (168), Expect = 1e-12
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 137 AFIGLSSPLQALGLP-NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN 195
              G  + L  L +     L  +    L  L   L  L +  + L  +   +F     L+
Sbjct: 26  HLPGAEN-LTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
            L+LS+N L +LS   +  L +L+ L L GN L 
Sbjct: 84  RLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 165 PLAPNLDRLDLSHNQ-LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL 223
           P A NL  L + + Q L  LE    +GL  L  L +  + L  ++ D       L  L L
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHN 250
             N L       +QGL S+ +L LS N
Sbjct: 88  SFNALESLSWKTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 5e-08
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 186 TSFKGLSSLNFLDLSYNK-LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTD 244
               G  +L  L +   + L  L    L  L  LR L +  + L      A      ++ 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 245 LDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
           L+LS N L   L   TV  L SL+ L ++ N  
Sbjct: 85  LNLSFNALES-LSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 10/48 (20%), Positives = 19/48 (39%)

Query: 644 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
           L  L+ L+I  +    V   A     +L+ L+   N ++ L   +   
Sbjct: 55  LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 644 LSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFSN 691
             +L  L I + Q    +    L GL +L +L+   + +  +   +F  
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
           P  +P    +  L +  NQF+ V    L+    LT +   +N+I  L + SF  ++ L  
Sbjct: 26  PKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82

Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           L L++NR+  +   +   L +L  L L  N +  + +     L +L  L +  N
Sbjct: 83  LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
             L L  N  ++VP   L+    +L  +DLS+N++  L N SF  ++ L  L LSYN+L 
Sbjct: 34  TELYLDGNQFTLVPK-ELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
            +       L +LR+L L GN ++V    A   L +++ L +  N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 34/132 (25%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
             L L  NQ   L          L  +DLS N++ TLS    + +  L  L L  NRL  
Sbjct: 34  TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK 290
                +       D                   L SL++LS+  N  S V  GA   L  
Sbjct: 92  ----CIP--PRTFD------------------GLKSLRLLSLHGNDISVVPEGAFNDLSA 127

Query: 291 LTSLSCHHNQID 302
           L+ L+   N + 
Sbjct: 128 LSHLAIGANPLY 139

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
           T L    NQ   L          L+ +DL++NRI  +S  S ++++ L TL LS+N LR 
Sbjct: 34  TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 352 LTQDLITPLKSLQELRLDDNDISMEPE 378
           +       LKSL+ L L  NDIS+ PE
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLA 167
           T++P +      L  + +S+  +  +S+ +F  ++  L  L L  N L  +P      L 
Sbjct: 44  TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ-LLTLILSYNRLRCIPPRTFDGLK 102

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN 202
            +L  L L  N +  +   +F  LS+L+ L +  N
Sbjct: 103 -SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 32/105 (30%), Positives = 54/105 (51%)

Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
             L L +N L  + +  L    P+L +L+L  NQL  +E  +F+G S +  L L  NK+ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
            +S      L  L+ L L  N+++  +  + + L S+T L+L+ N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 258 PSTVPRLSSLKVLSIAHNQFSSV-RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS 316
           P  +P       L +  N+   +   G    L  L  L    NQ+  +E ++F   S + 
Sbjct: 24  PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81

Query: 317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
            L L  N+I  +S      L  L TL+L  N +  +       L SL  L L  N
Sbjct: 82  ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 32/107 (29%), Positives = 48/107 (44%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
             T+L L+ N L          RL  L  L +  NQ + +   A  G   +  L    N+
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           I  + +  F  L  L  L+L  N+I  V   S  HL++LT+L+L+ N
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 26/133 (19%)

Query: 171 DRLDLSHNQLYKLENT-SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT 229
             L L+ N+L ++ +   F  L  L  L+L  N+L  +  +       ++ L+L  N++ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 230 VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289
                                     +       L  LK L++  NQ S V  G+   L+
Sbjct: 92  E-------------------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 290 KLTSLSCHHNQID 302
            LTSL+   N  +
Sbjct: 127 SLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 292 TSLSCHHNQIDVLEDH-SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           T L  + N++  +     F  L  L  L+L  N++  +   +    S++  L L  N ++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPE 378
            ++  +   L  L+ L L DN IS    
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMP 119

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 33/242 (13%)

Query: 163 LAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLV--TLRV 220
           L     NLD L+ +     KL     + L     LD  +           +  V  +LR 
Sbjct: 18  LGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFF-HYEFQNQRFSAEVLSSLRQ 76

Query: 221 LRLQGNRLTVSVVAAL-QGLRS----VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
           L L G R+T      +   L S    + +++L+   L      + +P     + L +  N
Sbjct: 77  LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136

Query: 276 QFSSVRRGALAGL-----DKLTSLSCHHNQIDVLEDHSFRALS-------TLSHLDLAHN 323
                    L  L      ++T+L   +N +          L        +++HL L H 
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLT---AAGVAVLMEGLAGNTSVTHLSLLHT 193

Query: 324 RI----VAVSGASLAHLSNLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDIS 374
            +    + +  A L     L  L++++N        AL +       SL+ L L  N++S
Sbjct: 194 GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH-PSLELLHLYFNELS 252

Query: 375 ME 376
            E
Sbjct: 253 SE 254

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 63.6 bits (155), Expect = 8e-11
 Identities = 45/256 (17%), Positives = 76/256 (29%), Gaps = 58/256 (22%)

Query: 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSS-------- 193
              L  + L +  L       L P+     +L L  N    L   + K L          
Sbjct: 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS---LGPEACKDLRDLLLHDQCQ 156

Query: 194 LNFLDLSYNKL-----MTLSQDCLAPLVTLRVLRLQGNRLT----VSVVAALQGLRSVTD 244
           +  L LS N L       L  + LA   ++  L L    L       + A L   R + +
Sbjct: 157 ITTLRLSNNPLTAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215

Query: 245 LDLSHNLLAGPLGPSTVPRLS-------SLKVLSIAHNQFSSVRRGALA-------GLDK 290
           L++++N      G +    L+       SL++L +  N+ SS  R  L        G  +
Sbjct: 216 LNVAYN----GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271

Query: 291 LTSLSCHHNQID---------------VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH 335
           +         +                  +    +    L   DL  +R   ++    A 
Sbjct: 272 VVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQ 331

Query: 336 L----SNLTTLDLSHN 347
           L      +  L     
Sbjct: 332 LLRVEGEVRALLEQLG 347

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 39/252 (15%), Positives = 64/252 (25%), Gaps = 54/252 (21%)

Query: 132 NISDGAFIGLSSPLQA---LGLPNNLLSVVPTSALAPL----APNLDRLDLSHNQLYKLE 184
            +       L         LGL  N L       L  L       +  L LS+N L    
Sbjct: 112 QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL---T 168

Query: 185 NTSFKGLS-------SLNFLDLSYNKL----MTLSQDCLAPLVTLRVLRLQGNRLT---- 229
                 L        S+  L L +  L    + L    L     L+ L +  N       
Sbjct: 169 AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228

Query: 230 VSVVAALQGLRSVTDLDLSHN--------LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVR 281
           +++  A +   S+  L L  N        +L    G +     + + V        S   
Sbjct: 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEG--GARVVVSLTEGTAVSEYW 286

Query: 282 RGALAGLDK---------------LTSLSCHHNQIDVLE----DHSFRALSTLSHLDLAH 322
              L+ + +               L       ++   L         R    +  L    
Sbjct: 287 SVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQL 346

Query: 323 NRIVAVSGASLA 334
               + SG+   
Sbjct: 347 GSSGSPSGSWSH 358

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 27/133 (20%)

Query: 171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV 230
            RL+L  N+L  L +  F  L+ L  L LS N++ +L       L  L +L L  N+   
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK--- 87

Query: 231 SVVAALQGL-RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD 289
                LQ L   V D                  +L+ LK L++  NQ  SV  G    L 
Sbjct: 88  -----LQSLPNGVFD------------------KLTQLKELALDTNQLKSVPDGIFDRLT 124

Query: 290 KLTSLSCHHNQID 302
            L  +  H N  D
Sbjct: 125 SLQKIWLHTNPWD 137

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
           P+ +P  SS   L +  N+  S+  G    L +LT LS   NQI  L D  F  L+ L+ 
Sbjct: 23  PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80

Query: 318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           L L  N++ ++       L+ L  L L  N L+++   +   L SLQ++ L  N
Sbjct: 81  LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 216 VTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
            +   L L+ N+L          L  +T L LS N +   L      +L+ L +L +  N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHEN 86

Query: 276 QFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
           +  S+  G    L +L  L+   NQ+  + D  F  L++L  + L  N
Sbjct: 87  KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 1/105 (0%)

Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
             L L +N L  +P      L   L +L LS NQ+  L +  F  L+ L  L L  NKL 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 206 TLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
           +L       L  L+ L L  N+L          L S+  + L  N
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
           S T L+L  N L   L      +L+ L  LS++ NQ  S+  G    L KLT L  H N+
Sbjct: 29  SATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
           +  L +  F  L+ L  L L  N++ +V       L++L  + L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.9 bits (132), Expect = 7e-08
 Identities = 52/315 (16%), Positives = 102/315 (32%), Gaps = 30/315 (9%)

Query: 96  RVSLLDCTLSNVTVLPGKF--LEGVTLHG---------LVISSGELKNISDGAFIGLSSP 144
           +V + +C   +   +  +F  +  V L G         +    G        A     + 
Sbjct: 47  KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSF----KGLSSLNFLDLS 200
           L+ + L   +++      +A    N   L LS                    +L  LDL 
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC--EGFSTDGLAAIAATCRNLKELDLR 164

Query: 201 YNKLMTLSQDCLAPLV----TLRVLRLQGNRLTVS---VVAALQGLRSVTDLDLSH--NL 251
            + +  +S   L+       +L  L +      VS   +   +    ++  L L+    L
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224

Query: 252 LAGPLGPSTVPRLSSLKV---LSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS 308
                     P+L  L      +       S    AL+G  +L  LS   + +       
Sbjct: 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV 284

Query: 309 FRALSTLSHLDLAHNRIVAVSGASLA-HLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 367
           +   S L+ L+L++  + +     L      L  L +      A  + L +  K L+ELR
Sbjct: 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR 344

Query: 368 LDDNDISMEPECIYV 382
           +  ++  +    + +
Sbjct: 345 VFPSEPFVMEPNVAL 359

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 54.2 bits (129), Expect = 7e-08
 Identities = 25/197 (12%), Positives = 68/197 (34%), Gaps = 25/197 (12%)

Query: 188 FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG--LRSVTDL 245
              +  LN L +     +++ +        L+ L +    L  SVV  + G  L ++  L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRP---NLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224

Query: 246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLE 305
            L   +         +     L     + ++F +++   +               + V  
Sbjct: 225 VLYVGV-EDYGFDGDMNVFRPL----FSKDRFPNLKWLGIV--------DAEEQNVVVEM 271

Query: 306 DHSFRALSTLSHLDLAHNRI----VAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK 361
                 L  L  +D++   +      +    +  + +L  +++ +N+   L+ ++   L+
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY---LSDEMKKELQ 328

Query: 362 SLQELRLDDNDISMEPE 378
               +++D +D     +
Sbjct: 329 KSLPMKIDVSDSQEYDD 345

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 31/163 (19%), Positives = 49/163 (30%), Gaps = 27/163 (16%)

Query: 231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS--VRRGALAGL 288
            V+ A+  L +   +  ++NL  G           +LK L I         V     + L
Sbjct: 166 PVLDAMPLLNN-LKIKGTNNLSIGKK------PRPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 289 DKLTSLSCHHNQIDVLEDHSFRALS---------TLSHLDLAHNRIVAVSGASLAH---L 336
             L  L  +    D   D                 L  L +       V          L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 337 SNLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDIS 374
             L T+D+S   L     R L   +   +K L+ + +  N +S
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 8e-06
 Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 27/202 (13%)

Query: 130 LKNISDGAFIGLSSP-LQALGLPNNLLSVVPTSALAP-LAPNLDRLDLSHNQLYKLENTS 187
           +K  ++ +      P L++L + +  L       +     PNL++L L         +  
Sbjct: 179 IKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238

Query: 188 FKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAAL---QGLRSVTD 244
                 L             S+D       L+ L +        VV        L  +  
Sbjct: 239 MNVFRPL------------FSKDRFP---NLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 245 LDLSHNLL---AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCHHNQ 300
           +D+S  +L      L    V ++  LK +++ +N  S   +  L   L     +S   + 
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS---DS 340

Query: 301 IDVLEDHSFRALSTLSHLDLAH 322
            +  +D+S+  ++ L H    H
Sbjct: 341 QEYDDDYSYPMITELEHHHHHH 362

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 65/533 (12%), Positives = 135/533 (25%), Gaps = 190/533 (35%)

Query: 20  CLVLLLTIYSYVTATSSPSTPTSTLPSSPSTPTPWSCPSIKNDLCACDLPHTL------- 72
            L +L  +   +       T  S   S+           ++  L +    + L       
Sbjct: 198 VLEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 73  ----------RC-----TANKSDLYAIS----------ESLRGLEPDERVSLLDCTLSNV 107
                      C     T  K     +S               L PDE  SLL       
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL------- 307

Query: 108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQAL-GLPNNLLSVVPTSALAPL 166
                K+L+            +L             P + L   P   LS++       +
Sbjct: 308 ----LKYLD--------CRPQDL-------------PREVLTTNPR-RLSIIA----ESI 337

Query: 167 APNLDRLD-LSHNQLYKLENTSFKGLSSLNFLDLS--YNKLMTLSQDCLAPLVTLRVLRL 223
              L   D   H    KL       L+ L   +    +++L         P + L ++  
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG 283
              +  V VV                                         N+    +  
Sbjct: 398 DVIKSDVMVVV----------------------------------------NKL--HKYS 415

Query: 284 ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD 343
            +    K +++S     +++           L +    H  IV                 
Sbjct: 416 LVEKQPKESTISIPSIYLELKV--------KLENEYALHRSIVD---------------- 451

Query: 344 LSHNFLRALTQDLITPLKS-----------LQELRLDDNDISMEPECIYVGFNTMDLELI 392
             +N  +    D + P              L+ +   +         +++ F  ++ ++ 
Sbjct: 452 -HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VFLDFRFLEQKIR 508

Query: 393 YSGV-WRHSTLLIPVMLSLCTRSSVVTRYR-YCVVLIEGSNILDQSALVLGCSEILALVP 450
           +    W  S  ++  +  L         Y+ Y   + +     ++  LV   + IL  +P
Sbjct: 509 HDSTAWNASGSILNTLQQL-------KFYKPY---ICDNDPKYER--LV---NAILDFLP 553

Query: 451 TLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQK 503
            +          + +  T L      +++    +        ++ +    VQ+
Sbjct: 554 KIEEN------LICSKYTDL------LRIALMAEDE-----AIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 3e-07
 Identities = 92/631 (14%), Positives = 177/631 (28%), Gaps = 204/631 (32%)

Query: 68  LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISS 127
           L        +  D   + +  + +   E +        ++ +        + L   ++S 
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEID-------HIIMSKDAVSGTLRLFWTLLSK 74

Query: 128 GELKNISDGAFIGLSSPLQALGLPNN--LLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN 185
            E   +    F+     L+     N   L+S + T    P +          ++LY  +N
Sbjct: 75  QE--EMVQ-KFVE--EVLR----INYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYN-DN 123

Query: 186 TSFKGLSSLN------FLDLSYNKLMTLSQD--------------CLAPLV--TLRVLRL 223
             F   +  N      +L L    L+ L                  +A  V  + +V   
Sbjct: 124 QVF---AKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 224 QGNR---LTV-------SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-RLSSLKVLSI 272
              +   L +       +V+  LQ L       +  N  +     S +  R+ S++    
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLL----YQIDPNWTSRSDHSSNIKLRIHSIQ---- 231

Query: 273 AHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV------ 326
                        A L +L     + N + VL +   +     +  +L   +I+      
Sbjct: 232 -------------AELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNL-SCKILLTTRFK 275

Query: 327 ----AVSGASLAHLS------NLT---TLDLSHNFLRALTQDL------ITPLKSLQELR 367
                +S A+  H+S       LT      L   +L    QDL        P +      
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR------ 329

Query: 368 LDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTL--LIPVM-LSLCTRSSVVTR--YRY 422
                +S+  E I  G  T D        W+H     L  ++  SL        R  +  
Sbjct: 330 -----LSIIAESIRDGLATWD----N---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 423 CVVLIEGSNILDQSALVLG----------CSEILALVPT---LTSQPLSYVTSL------ 463
             V    ++I     ++L              ++  +     +  QP     S+      
Sbjct: 378 LSVFPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 464 -RANVTGLGT-----VQVYVQLWTNYDPNCLLTI-------------------------- 491
            +  +          V  Y  +   +D + L+                            
Sbjct: 435 LKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 492 -TLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPLLHCITITNPFPS 550
             +++D   + QK        +      W+    +  TL +    KP  +   I +  P 
Sbjct: 494 RMVFLDFRFLEQK--------IRHDSTAWNASGSILNTLQQLKFYKP--Y---ICDNDPK 540

Query: 551 PPALP------LAGPSTPTHSSHYTSLINLS 575
              L       L         S YT L+ ++
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 60/331 (18%), Positives = 100/331 (30%), Gaps = 90/331 (27%)

Query: 2   SLIAYLMRDILRD--------GMSQYCLVLLLTIYSYVTATSSPSTPTS-TLPSSPSTPT 52
            L+      +L +          +  C +LL T +  VT   S +T T  +L     T T
Sbjct: 246 CLL------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 53  PW-------SCPSIKNDLCACDLPH---------------TLRCTANKSDLY-------- 82
           P             +      DLP                ++R      D +        
Sbjct: 300 PDEVKSLLLKYLDCRPQ----DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 83  --AISESLRGLEPDE-RVSLLDCTL--SNVTVLPGKFLE-----------GVTLHGLVIS 126
              I  SL  LEP E R      ++   +  + P   L             V ++ L   
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 127 SGELKNISDGAF----IGLSSPLQALGLPN---------NLLSVVPTSALAPLAPNLDRL 173
           S   K   +       I L   ++               N+     +  L P  P LD+ 
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP--PYLDQY 472

Query: 174 DLSH--NQLYKLENTSFKGLSSLNFLDLSY--NKLMTLSQDCLAP---LVTLRVLRLQGN 226
             SH  + L  +E+     L  + FLD  +   K+   S    A    L TL+ L+    
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 227 RLTVSVVAALQGLRSVTD--LDLSHNLLAGP 255
            +  +     + + ++ D    +  NL+   
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSK 563

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 28/82 (34%), Positives = 36/82 (43%)

Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
               L L  NQ+ KLE   F  L+ L  LDL  N+L  L       L  L  L L  N+L
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

Query: 229 TVSVVAALQGLRSVTDLDLSHN 250
                 A   L+S+T + L +N
Sbjct: 91  KSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 26/80 (32%), Positives = 41/80 (51%)

Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
             L  + NQI  LE   F  L+ L+ LDL +N++  +       L+ LT L L+ N L++
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 352 LTQDLITPLKSLQELRLDDN 371
           + +     LKSL  + L +N
Sbjct: 93  IPRGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 39/80 (48%)

Query: 292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRA 351
             L  ++NQI  LE   F  L  L  L    N++ A+       L+ LT LDL+ N L++
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 352 LTQDLITPLKSLQELRLDDN 371
           + +     LKSL  + L +N
Sbjct: 96  IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 27/82 (32%), Positives = 38/82 (46%)

Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
           +  RL L++NQ+ KLE   F  L +L  L  + NKL  +       L  L  L L  N L
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

Query: 229 TVSVVAALQGLRSVTDLDLSHN 250
                 A   L+S+T + L +N
Sbjct: 94  KSIPRGAFDNLKSLTHIYLYNN 115

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLS-NLTTLDLSHNF 348
           L   SC    + ++E++    +  L  L+L++NR+  +   +S+   + NL  L+LS N 
Sbjct: 152 LNRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207

Query: 349 LRALTQDLITPLKS--LQELRLDDN 371
           L++  +  +  +K   L+EL LD N
Sbjct: 208 LKSERE--LDKIKGLKLEELWLDGN 230

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 31/247 (12%), Positives = 68/247 (27%), Gaps = 39/247 (15%)

Query: 161 SALAPLAPNLDRLDLSHNQ-----LYKLENTSFKGLSSLNF------------------- 196
           + ++     L  +           L +L       L +L                     
Sbjct: 105 TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCR 164

Query: 197 ----LDLSYNKLMTLSQDCLAP-------LVTLRVLRLQGNRLTVSVVAAL-QGLRSVTD 244
               L +  +         L         L  L     +  +++   +  + +  RS+  
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 245 LDLSHNLLAGPLGP-STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV 303
           + +    +   +G       L      S+  +     +   L    KL  L   +   + 
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLA-HLSNLTTLDLSHNFLRALTQDLITPLKS 362
           +    F   + +  LDL +  +      +L     NL  L+  +       + L    K 
Sbjct: 285 MP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343

Query: 363 LQELRLD 369
           L+ LR++
Sbjct: 344 LKRLRIE 350

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 21/99 (21%)

Query: 290 KLTSLSC-HHNQIDVLEDHSFRAL-------STLSHLDLAHNRIVAVSGASLAHL----S 337
            L  ++  +   I      + +A        + +    +   R       +LA +    +
Sbjct: 37  DLEEVNLNNIMNIP---VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN 93

Query: 338 NLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDN 371
            L +L++  NF+      AL + L +   SL ELR+D+ 
Sbjct: 94  TLKSLNVESNFISGSGILALVEALQS-NTSLIELRIDNQ 131

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 35/168 (20%)

Query: 238 GLRSVTDLDLSHNLLAGPLGPSTVPRL--------SSLKVLSIA-HNQFSSVRRGALAGL 288
           GL SV        +       + V             L+ +++            A A  
Sbjct: 1   GLNSVIKPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEA 60

Query: 289 DK----LTSLSCHHNQIDVLEDHSFRAL-------STLSHLDLAHNRI-----VAVSGAS 332
            K    +   S    + +   D    AL       +TL  L++  N I     +A+  A 
Sbjct: 61  LKTNTYVKKFSIVGTRSN---DPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA- 116

Query: 333 LAHLSNLTTLDLSHNFLR---ALTQDLITPLK---SLQELRLDDNDIS 374
           L   ++L  L + +        +  ++   L+   +L +         
Sbjct: 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 32/151 (21%)

Query: 217 TLRVLRL-QGNRLTVSVVA----ALQGLRSVTDLDLSHNLLAGPLGPSTVPRL------- 264
            L  + L     + V  +     AL+    V    +                L       
Sbjct: 37  DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT----RSNDPVAFALAEMLKVN 92

Query: 265 SSLKVLSIAHNQFSSVRRGALA---GL---DKLTSLSCHHNQIDVLEDHSFRAL------ 312
           ++LK L++  N  S    G LA    L     L  L   +     L ++    +      
Sbjct: 93  NTLKSLNVESNFISG--SGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEK 149

Query: 313 -STLSHLDLAHNRIVAVSGASLAHLSNLTTL 342
            +TL        +      AS A ++N   +
Sbjct: 150 NTTLLKFGYHFTQQGPRLRASNAMMNNNDLV 180

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 14/209 (6%)

Query: 168 PNLDRLDLSHNQL-YKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG- 225
             +  +DLS++ +     +      S L  L L   +L     + LA    L  L L G 
Sbjct: 93  FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152

Query: 226 NRLTVSVVAAL-QGLRSVTDLDLS--HNLLAGPLGPSTVPRLSSLKVLSIA--HNQFSSV 280
           +  +   +  L      + +L+LS   +     +  +      ++  L+++         
Sbjct: 153 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212

Query: 281 RRGALA-GLDKLTSLSCHHNQIDVLEDHSFRALST---LSHLDLAH-NRIVAVSGASLAH 335
               L      L  L    + +  L++  F+       L HL L+    I+  +   L  
Sbjct: 213 DLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270

Query: 336 LSNLTTLDLSHNFLRALTQDLITPLKSLQ 364
           +  L TL +         Q L   L  LQ
Sbjct: 271 IPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	694
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.98
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.64
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.14
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.0
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.8
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.55
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.69
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	96.67
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	96.42
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	96.42
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	96.17
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	96.03
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	95.93
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	95.84
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	95.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.75
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	95.73
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	95.71
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	95.7
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	95.68
1he7_A	126	High affinity nerve growth factor receptor; transf	95.63
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	95.55
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	95.51
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	95.51
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	95.43
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	95.4
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	95.33
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	95.28
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	95.26
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	95.24
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	95.23
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	95.19
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	95.18
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	95.17
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	95.11
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	95.05
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	95.0
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	94.79
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	94.73
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	94.69
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	94.67
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	94.58
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	94.53
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	94.46
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	94.4
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	94.39
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	94.17
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	94.16
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	94.16
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	94.06
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	93.76
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	93.73
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	93.64
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	93.46
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	93.39
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	93.02
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	92.89
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	92.73
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	92.55
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	92.49
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	92.45
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	92.33
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	92.31
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	92.29
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	92.27
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	92.25
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	92.17
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	92.02
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	92.01
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	92.0
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	92.0
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	91.91
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	91.81
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	91.79
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	91.74
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	91.69
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	91.58
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	91.53
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	91.53
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	91.49
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	91.49
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	91.45
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	91.41
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	91.31
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	91.27
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	91.21
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	91.2
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	91.14
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	91.1
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	91.0
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	90.89
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	90.78
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	90.76
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	90.72
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	90.7
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	90.59
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	90.55
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	90.47
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	90.4
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	90.37
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	90.33
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	90.24
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	90.17
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	90.14
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	90.1
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	90.1
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	90.07
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	90.02
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	89.94
2ens_A	96	Advanced glycosylation END product-specific recept	89.82
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	89.74
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	89.71
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	89.6
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	89.48
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	89.42
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	89.4
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	89.36
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	89.35
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	89.28
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	89.24
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	89.15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	89.13
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	89.09
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	89.01
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	88.88
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	88.83
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	88.77
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	88.72
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	88.7
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	88.66
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	88.65
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	88.51
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	88.45
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	88.4
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	88.26
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	88.25
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	88.17
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	88.11
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	88.09
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	88.07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	88.06
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	88.02
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	87.94
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	87.88
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	87.88
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	87.78
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	87.72
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	87.64
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	87.58
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	87.48
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	87.44
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	87.44
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	87.41
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	87.4
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	87.31
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	87.31
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	87.29
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	87.29
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	87.21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	87.2
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	87.09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	86.98
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	86.91
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	86.87
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	86.78
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	86.76
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	86.7
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	86.67
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	86.64
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	86.63
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	86.55
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	86.53
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	86.49
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	86.17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	86.16
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	86.08
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	86.08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	86.04
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	85.96
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	85.85
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	85.84
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	85.65
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	85.6
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	85.53
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	85.52
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	85.49
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	85.46
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	85.38
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	85.02
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	85.0
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	84.89
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	84.83
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	84.81
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	84.76
1xt5_A	135	Variable region-containing chitin-binding protein	84.66
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	84.54
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	84.53
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	84.48
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	84.47
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	84.36
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	84.33
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	84.32
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	84.3
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	84.22
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	84.22
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	84.05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	83.98
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	83.94
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	83.77
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	83.7
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	84.18
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	83.65
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	83.62
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	83.6
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	83.52
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	83.51
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	83.46
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	83.34
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	83.27
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	83.26
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	83.08
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	83.03
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	82.99
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	82.95
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	82.86
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	82.81
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	82.74
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	82.73
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	82.72
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	82.7
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	82.57
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	82.33
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	82.21
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	82.13
1xiw_B	79	T-cell surface glycoprotein CD3 delta chain; CD3-e	81.86
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	81.74
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	81.61
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	81.46
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	81.43
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	81.42
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	81.25
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	81.19
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	81.14
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	81.09
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	81.05
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	81.04
3khq_A	133	B-cell antigen receptor complex-associated protei	80.93
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	80.82
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	80.76
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	80.76
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	80.74
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	80.72
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	80.68
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	80.59
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	80.46
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	80.32
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	80.29
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	80.28
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	80.22
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	80.21
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	80.08
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	80.07

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-44  Score=403.39  Aligned_cols=430  Identities=24%  Similarity=0.297  Sum_probs=345.5

Q ss_pred             CCCCCCCCCCCCCC-CCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCCCC
Q psy8879          55 SCPSIKNDLCACDL-PHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKN  132 (694)
Q Consensus        55 ~Cp~~~~~~C~C~~-~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i~~  132 (694)
                      .||.    .|.|.. ...+.|...  .+..+|..+.     ..++.|++++|+++.++ ..|..+++|++|++++|.++.
T Consensus         2 ~Cp~----~C~C~~~~~~v~c~~~--~l~~ip~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~   70 (477)
T 2id5_A            2 GCPP----RCECSAQDRAVLCHRK--RFVAVPEGIP-----TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA   70 (477)
T ss_dssp             CCST----TCEEETTTTEEECCSC--CCSSCCSCCC-----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred             cccC----CCeECCCCCEEEeCCC--CcCcCCCCCC-----CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE
Confidence            5888    899964 357888653  4666676543     38999999999998884 578889999999999999999


Q ss_pred             CCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCcccc
Q psy8879         133 ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCL  212 (694)
Q Consensus       133 i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f  212 (694)
                      +.+.+|.++. +|++|+|++|.++.++...|.++ ++|++|+|++|.++.+.+..|.++++|++|++++|.+.++.+..|
T Consensus        71 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  148 (477)
T 2id5_A           71 VEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF  148 (477)
T ss_dssp             ECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred             eChhhhhCCc-cCCEEECCCCcCCccCcccccCC-CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc
Confidence            9888888876 49999999999999999889999 999999999999999998999999999999999999999999999


Q ss_pred             CCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccc
Q psy8879         213 APLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT  292 (694)
Q Consensus       213 ~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~  292 (694)
                      ..+++|++|++++|++++..+..+.++++|+.|++++|.+.+ +.+..+..+++|+.|++++|.+.+..+.......+|+
T Consensus       149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  227 (477)
T 2id5_A          149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT  227 (477)
T ss_dssp             TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred             cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence            999999999999999998888889999999999999999986 5577899999999999999876554444444556899


Q ss_pred             eecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCC
Q psy8879         293 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND  372 (694)
Q Consensus       293 ~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~  372 (694)
                      +|++++|+++.++...|..+++|+.|+|++|+++++.+..|.++++|+.|+|++|+++++.+..|..+++|+.|+|++|+
T Consensus       228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence            99999999999988889999999999999999999988889999999999999999999988889999999999999999


Q ss_pred             CCCCCccccc----------CCCC--CCcccccccccccccccCCccCccccCCcccc---------------eeeEEEE
Q psy8879         373 ISMEPECIYV----------GFNT--MDLELIYSGVWRHSTLLIPVMLSLCTRSSVVT---------------RYRYCVV  425 (694)
Q Consensus       373 L~~l~~~~f~----------~~Np--CdC~l~~~~~wl~~~~~~~~~~~~C~~~~~~~---------------~~~~~~v  425 (694)
                      ++.+++..|.          .+||  |||.+.|+..|.... ......+.|..+....               ..+..+.
T Consensus       308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~-~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~  386 (477)
T 2id5_A          308 LTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL-NFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAR  386 (477)
T ss_dssp             CSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSS-CCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEE
T ss_pred             CceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhcc-ccCccCceeCCchHHcCCchhhCccccccceeEecccc
Confidence            9999887764          6888  999999998886521 1223345665532111               1122222


Q ss_pred             EeecC----ccccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         426 LIEGS----NILDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       426 ~~~~~----~~~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      .....    ...++..+.+.|.+       +.|....+.....  ....++.+..+|+| |.+|+.+|+|.|+|+|+|..
T Consensus       387 i~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  464 (477)
T 2id5_A          387 IRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSA--KSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAG  464 (477)
T ss_dssp             ESCCSCEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC---------CEECTTSCEEESSCCSTTCEEEEEEEEETT
T ss_pred             ccccccccEEEeCCCeEEEEEeccccCCCEEEEEECCcccccc--CCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCC
Confidence            22211    23344556677766       5666655444311  13446667778888 99999999999999999998


Q ss_pred             eeccceeE
Q psy8879         494 YIDGDVIV  501 (694)
Q Consensus       494 ~~~~~~~~  501 (694)
                      +.+...+.
T Consensus       465 g~~~~~~~  472 (477)
T 2id5_A          465 GNDSMPAH  472 (477)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            87755544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=2.5e-42  Score=383.81  Aligned_cols=364  Identities=23%  Similarity=0.307  Sum_probs=247.7

Q ss_pred             eEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccC
Q psy8879          98 SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH  177 (694)
Q Consensus        98 ~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~  177 (694)
                      ..++|++.+++.+|..+.  .+++.|++++|.++.+....|.++. +|++|+|++|.++.+++..|.++ ++|++|+|++
T Consensus        46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~  121 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFD  121 (440)
T ss_dssp             CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTC-SSCCEEECCS
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCC-ccCCEEECCC
Confidence            356777778888887654  3455556655555555555454433 25555555555555554445554 4555555555


Q ss_pred             CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCC
Q psy8879         178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLG  257 (694)
Q Consensus       178 N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~  257 (694)
                      |+++.+++..|.++++|++|+|++|.++.+++.                        .|.++++|++|++++|+..+.++
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------------------~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY------------------------AFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT------------------------TTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHH------------------------HhhhCcccCEeCCCCCCCcceeC
Confidence            555555444445555555555555555444444                        44445555555555533333344


Q ss_pred             CCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhccc
Q psy8879         258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS  337 (694)
Q Consensus       258 p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~  337 (694)
                      +..|..+++|++|+|++|.++.++  .+..+++|++|+|++|+++.+++..|.++++|+.|+|++|+++++.+..|.+++
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  255 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ  255 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred             cchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence            556777777777777777777765  367788888899999988888888899999999999999999999999999999


Q ss_pred             ccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccccC-CccCccccCCcc
Q psy8879         338 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLI-PVMLSLCTRSSV  416 (694)
Q Consensus       338 ~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~~-~~~~~~C~~~~~  416 (694)
                      +|+.|+|++|+++++++..+..+++|+.|+|++|+|.            |||++.||..|++..... ....+.|..|..
T Consensus       256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~------------CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~  323 (440)
T 3zyj_A          256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN------------CNCDILWLSWWIKDMAPSNTACCARCNTPPN  323 (440)
T ss_dssp             TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE------------CSSTTHHHHHHHHTTSCSSCSCCCBEEESTT
T ss_pred             CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc------------CCCCchHHHHHHHhccccCCccccCCCChhH
Confidence            9999999999999999999999999999999999999            999999999999754322 223466776543


Q ss_pred             cceee-----------EEEEEeecC---ccccceeeeeceeE------EEEeccCccccccceeEeeeeEEecccEE-EE
Q psy8879         417 VTRYR-----------YCVVLIEGS---NILDQSALVLGCSE------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QV  475 (694)
Q Consensus       417 ~~~~~-----------~~~v~~~~~---~~~~~~~~~l~c~~------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~  475 (694)
                      .++..           ..+.+....   ...++....+.|.+      +.|..+++... .......++.+..+|+| |.
T Consensus       324 l~g~~l~~l~~~~~~C~~P~i~~~~~~~~v~~G~~v~L~C~~~~p~p~i~W~~~~~~~~-~~~~~~~~~~~~~~~~L~I~  402 (440)
T 3zyj_A          324 LKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVM-THGAYKVRIAVLSDGTLNFT  402 (440)
T ss_dssp             TTTCBCC----CCSCCCCCCEEECCCCEEECTTSCCEECCEESSTTSEEEEECTTSCEE-ESSSCCSSEEECTTCCEEES
T ss_pred             hcCccHhHhhhhhccCCCCcccccccceeeccCceEEEEeecCCCCCceEEEeCCCcee-eccCCCceEEEccCCeEEEc
Confidence            33221           112222211   23344556677766      77877666554 22223456777888888 99


Q ss_pred             EEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         476 YVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       476 ~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      +|+.+|+|.|+|+|+|.++.++..+...+
T Consensus       403 ~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v  431 (440)
T 3zyj_A          403 NVTVQDTGMYTCMVSNSVGNTTASATLNV  431 (440)
T ss_dssp             SCCSTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             cCChhhCEEEEEEEEcCCCcEEEEEEEEE
Confidence            99999999999999999998776655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=1.6e-41  Score=378.50  Aligned_cols=362  Identities=22%  Similarity=0.267  Sum_probs=241.9

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .++|++.+++.+|..+.  ++++.|++++|.|+.+....|.++. +|++|+|++|.++.+++..|.++ ++|++|+|++|
T Consensus        58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n  133 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGL-ASLNTLELFDN  133 (452)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSS
T ss_pred             EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCc-ccCCEEECCCC
Confidence            46677777777776553  3555666666665555555554433 25555555555555555455555 55555555555


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCC
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGP  258 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p  258 (694)
                      +++.+++..|.++++|++|+|++|+++.+++..|..+++|                        ++|++++|+..+.+++
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------------~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL------------------------MRLDLGELKKLEYISE  189 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC------------------------CEEECCCCTTCCEECT
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc------------------------cEEeCCCCCCccccCh
Confidence            5555554445555555555555555555444444444444                        4455544333333445


Q ss_pred             CCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccc
Q psy8879         259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN  338 (694)
Q Consensus       259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~  338 (694)
                      ..|..+++|+.|+|++|++++++  .+..+++|++|+|++|.++.+++..|.++++|+.|+|++|+++++.+..|.++++
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  267 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS  267 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence            56667777777777777777764  3677888888888888888888888999999999999999999999999999999


Q ss_pred             cCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccccC-CccCccccCCccc
Q psy8879         339 LTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLI-PVMLSLCTRSSVV  417 (694)
Q Consensus       339 L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~~-~~~~~~C~~~~~~  417 (694)
                      |+.|+|++|+++++++..+..+++|+.|+|++|+|.            |||++.|+..|++..... ....+.|..|...
T Consensus       268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~------------CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l  335 (452)
T 3zyi_A          268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN------------CDCDILWLAWWLREYIPTNSTCCGRCHAPMHM  335 (452)
T ss_dssp             CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE------------CSTTTHHHHHHHHHHC---CCSSCBEEESTTT
T ss_pred             CCEEECCCCcCCccChHHhccccCCCEEEccCCCcC------------CCCCchHHHHHHHHhCccCCccCcEeCCchHh
Confidence            999999999999999999999999999999999999            999999999998742211 1123445443221


Q ss_pred             ce-----------eeEEEEEeec---CccccceeeeeceeE-----EEEeccCccccccceeEeeeeEEecccEE-EEEE
Q psy8879         418 TR-----------YRYCVVLIEG---SNILDQSALVLGCSE-----ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYV  477 (694)
Q Consensus       418 ~~-----------~~~~~v~~~~---~~~~~~~~~~l~c~~-----i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v  477 (694)
                      ++           .+..+.+...   ....++....+.|.+     +.|..+++... .......++.+..+|+| |.+|
T Consensus       336 ~g~~l~~~~~~~~~C~~P~i~~~~~~~~v~~G~~~~l~C~~~p~p~i~W~~~~~~~~-~~~~~~~~~~~~~~g~L~i~~v  414 (452)
T 3zyi_A          336 RGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVL-SHASRHPRISVLNDGTLNFSHV  414 (452)
T ss_dssp             TTCBTTSCCGGGCCCCCCCCSBCCCCEECCTTSCCEECCBCCTTSEEEEECTTSCEE-CSSCCCSSCEECTTSCEECSSC
T ss_pred             ccchhhccchhhhcccCcccccccccccccCCCEEEEEEeCCCCCcEEEEeCCCcEe-ccCCCCCCEEECCCCeEEEeec
Confidence            11           1111111111   123344556677755     77877666544 22223446677888989 9999


Q ss_pred             EecCCCcceeEEEEEeeeccceeEEe
Q psy8879         478 QLWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       478 ~~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      +.+|+|.|+|+|+|.++.+...+...
T Consensus       415 ~~~D~G~Y~C~a~N~~G~~~~~~~l~  440 (452)
T 3zyi_A          415 LLSDTGVYTCMVTNVAGNSNASAYLN  440 (452)
T ss_dssp             CTTCCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CHHHCEEEEEEEEcCCCcEEEEEEEE
Confidence            99999999999999998877665444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.8e-37  Score=338.72  Aligned_cols=347  Identities=25%  Similarity=0.331  Sum_probs=270.8

Q ss_pred             CCCCCCCCCCCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCCCCC-C
Q psy8879          55 SCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSGELK-N  132 (694)
Q Consensus        55 ~Cp~~~~~~C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n~i~-~  132 (694)
                      .||.    .|.|. ...+.|...  .+..+|. +.     ..++.||+++|.++.+ |..+..+++|++|++++|.+. .
T Consensus         3 p~~~----~c~~~-~~~~~c~~~--~l~~lp~-l~-----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~   69 (455)
T 3v47_A            3 PGTS----ECSVI-GYNAICINR--GLHQVPE-LP-----AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV   69 (455)
T ss_dssp             --------CCEEE-TTEEECCSS--CCSSCCC-CC-----TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE
T ss_pred             Cccc----eeEEE-ccccCcCCC--CcccCCC-CC-----CccCEEEecCCccCcCChhHhccCccccEEECcCCcccce
Confidence            3565    67775 446778654  3555554 21     4899999999999887 677889999999999999987 6


Q ss_pred             CCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCc--ccccCCCCccEEEecCCCCCCCCcc
Q psy8879         133 ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN--TSFKGLSSLNFLDLSYNKLMTLSQD  210 (694)
Q Consensus       133 i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~--~~f~~L~~L~~L~Ls~N~l~~i~~~  210 (694)
                      +++..|.++. +|++|+|++|.++.+++..|.++ ++|++|+|++|.+++..+  ..|.++++|++|++++|+++++.+.
T Consensus        70 i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  147 (455)
T 3v47_A           70 IRNNTFRGLS-SLIILKLDYNQFLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA  147 (455)
T ss_dssp             ECTTTTTTCT-TCCEEECTTCTTCEECTTTTTTC-TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred             ECcccccccc-cCCEEeCCCCccCccChhhccCc-ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence            7777787765 49999999999999988889999 999999999999987433  3488999999999999999998776


Q ss_pred             c-cCCCCCCcEEeccCCcccchhhhhhccC----------------------------------cccccccCCCCcCCCC
Q psy8879         211 C-LAPLVTLRVLRLQGNRLTVSVVAALQGL----------------------------------RSVTDLDLSHNLLAGP  255 (694)
Q Consensus       211 ~-f~~L~~L~~L~Ls~N~l~~~~~~~~~~L----------------------------------~~L~~L~Ls~N~l~~~  255 (694)
                      . |..+++|++|++++|++++..+..+..+                                  ++|++|++++|.+.+.
T Consensus       148 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  227 (455)
T 3v47_A          148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES  227 (455)
T ss_dssp             GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred             cccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence            5 8889999999999999987776665543                                  5677777777766421


Q ss_pred             C------------------------------------CCCCCCC--ccccceeeccCCcccccccccccCCcccceeccc
Q psy8879         256 L------------------------------------GPSTVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH  297 (694)
Q Consensus       256 i------------------------------------~p~~~~~--l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls  297 (694)
                      .                                    .+..+..  .++|+.|++++|.++++.+..+.++++|++|+++
T Consensus       228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  307 (455)
T 3v47_A          228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA  307 (455)
T ss_dssp             HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred             chhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence            1                                    0011111  2578888888888888877788888888888888


Q ss_pred             CCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCC
Q psy8879         298 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP  377 (694)
Q Consensus       298 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~  377 (694)
                      +|+++.+++..|.++++|+.|+|++|+++++.+..|.++++|+.|+|++|+++++++..+..+++|++|++++|+++.+|
T Consensus       308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence            88888888878888888888888888888888888888888888888888888887777888888888888888888888


Q ss_pred             ccccc----------CCCC--CCcc-cccccccccccccCCccCccccCCcc
Q psy8879         378 ECIYV----------GFNT--MDLE-LIYSGVWRHSTLLIPVMLSLCTRSSV  416 (694)
Q Consensus       378 ~~~f~----------~~Np--CdC~-l~~~~~wl~~~~~~~~~~~~C~~~~~  416 (694)
                      +..|.          .+||  |+|. +.|+..|++...........|..+..
T Consensus       388 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c~~~~~  439 (455)
T 3v47_A          388 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK  439 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCBBTTTCC
T ss_pred             HhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccceeeeeeecCCCc
Confidence            76654          6777  9997 78899999765555555677876443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.2e-36  Score=346.58  Aligned_cols=348  Identities=27%  Similarity=0.309  Sum_probs=275.4

Q ss_pred             CCCCCCC-CcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcC
Q psy8879          63 LCACDLP-HTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIG  140 (694)
Q Consensus        63 ~C~C~~~-~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~  140 (694)
                      .|.|..+ ..+.|..  ..++.+|..++     ..++.||+++|+|+.+|+ .|..+++|++|+|++|.|+.+++++|.+
T Consensus        26 ~c~~~~~~~~~~c~~--~~l~~vP~~lp-----~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~   98 (635)
T 4g8a_A           26 PCVEVVPNITYQCME--LNFYKIPDNLP-----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   98 (635)
T ss_dssp             CSEEEETTTEEECTT--SCCSSCCSSSC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CccccCCCCEEECCC--CCcCccCCCCC-----cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence            4555433 3567754  34777887663     379999999999999975 6889999999999999999999999988


Q ss_pred             CCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCC-ccccCCCCCCc
Q psy8879         141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLR  219 (694)
Q Consensus       141 l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~-~~~f~~L~~L~  219 (694)
                      +.. |++|+|++|+|+.+++..|.++ ++|++|+|++|+++++++..|+++++|++|++++|.++.+. +..+..+++|+
T Consensus        99 L~~-L~~L~Ls~N~l~~l~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A           99 LSH-LSTLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             CTT-CCEEECTTCCCCEECGGGGTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             CCC-CCEEEccCCcCCCCCHHHhcCC-CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence            765 9999999999999999999999 99999999999999999989999999999999999998764 56788899999


Q ss_pred             EEeccCCcccchhhhhhcc-------------------------------------------------------------
Q psy8879         220 VLRLQGNRLTVSVVAALQG-------------------------------------------------------------  238 (694)
Q Consensus       220 ~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------------  238 (694)
                      +|++++|++++..+..+..                                                             
T Consensus       177 ~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l  256 (635)
T 4g8a_A          177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL  256 (635)
T ss_dssp             EEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEE
T ss_pred             hhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccc
Confidence            9999999876433322211                                                             


Q ss_pred             --------------------------------------------------------------------------------
Q psy8879         239 --------------------------------------------------------------------------------  238 (694)
Q Consensus       239 --------------------------------------------------------------------------------  238 (694)
                                                                                                      
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~  336 (635)
T 4g8a_A          257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV  336 (635)
T ss_dssp             EEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcc
Confidence                                                                                            


Q ss_pred             ---------------------------------CcccccccCCCCcCCC-------------------------------
Q psy8879         239 ---------------------------------LRSVTDLDLSHNLLAG-------------------------------  254 (694)
Q Consensus       239 ---------------------------------L~~L~~L~Ls~N~l~~-------------------------------  254 (694)
                                                       +++|+.|++++|.+..                               
T Consensus       337 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~  416 (635)
T 4g8a_A          337 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNF  416 (635)
T ss_dssp             SCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCC
T ss_pred             cccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccc
Confidence                                             1122222222222210                               


Q ss_pred             ------------------CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcc-ccccchhhhccccc
Q psy8879         255 ------------------PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI-DVLEDHSFRALSTL  315 (694)
Q Consensus       255 ------------------~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L-~~i~~~~f~~l~~L  315 (694)
                                        ..+...+..+++++.++++.|.+..+.+..+.++++|+.|++++|.+ ..+.+..|..+++|
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence                              00112233444556666666667777777778888899999998874 45667788999999


Q ss_pred             ccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc-----------CC
Q psy8879         316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV-----------GF  384 (694)
Q Consensus       316 ~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-----------~~  384 (694)
                      +.|+|++|+|+++++..|.++++|+.|+|++|+|+++++..|..+++|+.|+|++|+|++++++.|.           ++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999999999998876553           78


Q ss_pred             CC--CCccccccccccccc--ccCCccCccccCCcccce
Q psy8879         385 NT--MDLELIYSGVWRHST--LLIPVMLSLCTRSSVVTR  419 (694)
Q Consensus       385 Np--CdC~l~~~~~wl~~~--~~~~~~~~~C~~~~~~~~  419 (694)
                      ||  |||++.||..|++..  .+.+..+++|++|...++
T Consensus       577 Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g  615 (635)
T 4g8a_A          577 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  615 (635)
T ss_dssp             CCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTT
T ss_pred             CCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCC
Confidence            88  999999999999643  344566899998876544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.7e-35  Score=334.97  Aligned_cols=161  Identities=23%  Similarity=0.223  Sum_probs=126.9

Q ss_pred             CCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc-ccchhhhcccccccccCCCCccccccccchhccc
Q psy8879         259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV-LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS  337 (694)
Q Consensus       259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~-i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~  337 (694)
                      ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++. +.+..|..+++|+.|++++|+++++.+..|.+++
T Consensus       418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH  497 (606)
T ss_dssp             TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence            445566666777777777766666677778888888888888876 4566788899999999999999999899999999


Q ss_pred             ccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc----------CCCC--CCccccccccccccc--cc
Q psy8879         338 NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV----------GFNT--MDLELIYSGVWRHST--LL  403 (694)
Q Consensus       338 ~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~----------~~Np--CdC~l~~~~~wl~~~--~~  403 (694)
                      +|+.|+|++|+++++++..+..+++|+.|++++|+++.+|..+..          .+||  |+|++.||..|++..  .+
T Consensus       498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~  577 (606)
T 3vq2_A          498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFL  577 (606)
T ss_dssp             TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSB
T ss_pred             cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccc
Confidence            999999999999999888899999999999999999999875321          7888  999999999999743  24


Q ss_pred             CCccCccccCCcccce
Q psy8879         404 IPVMLSLCTRSSVVTR  419 (694)
Q Consensus       404 ~~~~~~~C~~~~~~~~  419 (694)
                      ....++.|..+....+
T Consensus       578 ~~~~~~~C~~p~~~~~  593 (606)
T 3vq2_A          578 VNVEQMTCATPVEMNT  593 (606)
T ss_dssp             SSGGGCCCC-------
T ss_pred             cCCccceeCCChHhCC
Confidence            4556789987765444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.4e-34  Score=331.36  Aligned_cols=320  Identities=23%  Similarity=0.276  Sum_probs=279.3

Q ss_pred             CeeEEEcCCCCCCCCCcc-ccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          96 RVSLLDCTLSNVTVLPGK-FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~-~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      .++.+++++|.++.++.. +..+++|++|++++|.++.++.. |.++ ++|++|++++|.++.+++..+..+ ++|++|+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l-~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGL-STLKKLVLSANKFENLCQISASNF-PSLTHLS  331 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSC-TTCCEEECTTCCCSBGGGGCGGGC-TTCSEEE
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hccc-ccCCEEECccCCcCcCchhhhhcc-CcCCEEE
Confidence            789999999999888765 77889999999999999988764 5444 469999999999999988889998 9999999


Q ss_pred             ccCCCCC-CCCcccccCCCCccEEEecCCCCCCCC--ccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCc
Q psy8879         175 LSHNQLY-KLENTSFKGLSSLNFLDLSYNKLMTLS--QDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL  251 (694)
Q Consensus       175 Ls~N~L~-~i~~~~f~~L~~L~~L~Ls~N~l~~i~--~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~  251 (694)
                      +++|.+. .+++..|.++++|++|++++|.+.++.  +..+..+++|++|++++|++.+..+..|..+++|++|++++|.
T Consensus       332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            9999887 566667899999999999999999886  6678999999999999999998888999999999999999999


Q ss_pred             CCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc---cchhhhcccccccccCCCCccccc
Q psy8879         252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL---EDHSFRALSTLSHLDLAHNRIVAV  328 (694)
Q Consensus       252 l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i---~~~~f~~l~~L~~L~Ls~N~L~~i  328 (694)
                      +.+..++..+..+++|+.|++++|.+++..+..+.++++|++|++++|+++..   ....+..+++|+.|++++|+++++
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence            98765556688999999999999999998888899999999999999999763   235688999999999999999999


Q ss_pred             cccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc----------CCCC--CCcccccccc
Q psy8879         329 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV----------GFNT--MDLELIYSGV  396 (694)
Q Consensus       329 ~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~----------~~Np--CdC~l~~~~~  396 (694)
                      .+..|.++++|+.|+|++|+++++++..+..+++| .|++++|+++++++..|.          .+||  |+|...||..
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~  570 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE  570 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHH
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHH
Confidence            99999999999999999999999999999999999 999999999999887554          7899  9999999999


Q ss_pred             ccccc--ccCCccCccccCCcccce
Q psy8879         397 WRHST--LLIPVMLSLCTRSSVVTR  419 (694)
Q Consensus       397 wl~~~--~~~~~~~~~C~~~~~~~~  419 (694)
                      |++..  .+.....+.|..|...++
T Consensus       571 w~~~~~~~~~~~~~~~C~~p~~~~g  595 (606)
T 3t6q_A          571 WYKENMQKLEDTEDTLCENPPLLRG  595 (606)
T ss_dssp             HHHHCGGGEECGGGCBEEESGGGTT
T ss_pred             HHHhCcccccCCCCCeeCCchHhCC
Confidence            99743  233456788987754433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.3e-34  Score=331.36  Aligned_cols=334  Identities=20%  Similarity=0.252  Sum_probs=242.3

Q ss_pred             CCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCCCCCCcchhcCCC
Q psy8879          64 CACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLS  142 (694)
Q Consensus        64 C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~  142 (694)
                      |.|.....+.|.++  .++.+|..+.     ..++.|++++|.++.++ ..|..+++|++|++++|.++.+.+++|.++.
T Consensus        28 ~~~~~~~~l~ls~~--~L~~ip~~~~-----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  100 (562)
T 3a79_B           28 FSNELESMVDYSNR--NLTHVPKDLP-----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ  100 (562)
T ss_dssp             -----CCEEECTTS--CCCSCCTTSC-----TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             cccCCCcEEEcCCC--CCccCCCCCC-----CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence            34544456777654  3555665543     48999999999998886 5788889999999999999999888887765


Q ss_pred             CCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCC-cccccCCCCccEEEecCCCCCCCCccccCCC------
Q psy8879         143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL------  215 (694)
Q Consensus       143 ~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L------  215 (694)
                      . |++|+|++|.++.+|..   .+ ++|++|+|++|+++.++ +..|+++++|++|++++|+++......+..+      
T Consensus       101 ~-L~~L~Ls~N~l~~lp~~---~l-~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~  175 (562)
T 3a79_B          101 D-LEYLDVSHNRLQNISCC---PM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL  175 (562)
T ss_dssp             T-CCEEECTTSCCCEECSC---CC-TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEE
T ss_pred             C-CCEEECCCCcCCccCcc---cc-ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEE
Confidence            4 99999999999988875   56 88999999999998876 4678888889888888888765322222222      


Q ss_pred             -------------------C------------------------------------------------------------
Q psy8879         216 -------------------V------------------------------------------------------------  216 (694)
Q Consensus       216 -------------------~------------------------------------------------------------  216 (694)
                                         .                                                            
T Consensus       176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~  255 (562)
T 3a79_B          176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT  255 (562)
T ss_dssp             EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred             eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence                               1                                                            


Q ss_pred             ---------------------CCcEEeccCCcccchhhhhh---------------------------------------
Q psy8879         217 ---------------------TLRVLRLQGNRLTVSVVAAL---------------------------------------  236 (694)
Q Consensus       217 ---------------------~L~~L~Ls~N~l~~~~~~~~---------------------------------------  236 (694)
                                           +|++|++++|++++.+|..+                                       
T Consensus       256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred             ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence                                 34444444444443333322                                       


Q ss_pred             --------------ccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccc--cccccCCcccceecccCCc
Q psy8879         237 --------------QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVR--RGALAGLDKLTSLSCHHNQ  300 (694)
Q Consensus       237 --------------~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~--~~~~~~L~~L~~L~Ls~N~  300 (694)
                                    ..+++|++|++++|.+.+.+ +..+..+++|++|++++|++++++  +..+.++++|++|++++|.
T Consensus       336 L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV-FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT-TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             EEccCCCcccccCccCCCCceEEECCCCccccch-hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence                          45567777777777777643 666777778888888888777654  2456777788888888888


Q ss_pred             ccc-ccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879         301 IDV-LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC  379 (694)
Q Consensus       301 L~~-i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~  379 (694)
                      ++. ++...|..+++|+.|++++|++++..+..+.  ++|+.|+|++|+++.+++..+ .+++|+.|++++|+++.+|..
T Consensus       415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~  491 (562)
T 3a79_B          415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDG  491 (562)
T ss_dssp             CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTT
T ss_pred             CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHH
Confidence            876 6666677778888888888887765544333  689999999999999988766 899999999999999999987


Q ss_pred             ccc----------CCCC--CCcccccccc-ccccccc--------CCccCccccC
Q psy8879         380 IYV----------GFNT--MDLELIYSGV-WRHSTLL--------IPVMLSLCTR  413 (694)
Q Consensus       380 ~f~----------~~Np--CdC~l~~~~~-wl~~~~~--------~~~~~~~C~~  413 (694)
                      .|.          ++||  |+|++.||.. |.+....        .....+.|+.
T Consensus       492 ~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          492 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG  546 (562)
T ss_dssp             STTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred             HHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence            443          7888  9999999955 8753221        1234677865

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.3e-34  Score=320.59  Aligned_cols=176  Identities=20%  Similarity=0.294  Sum_probs=137.2

Q ss_pred             ccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCccccccc--ccccCCcccceecccCCcccc-ccchhhhccc
Q psy8879         237 QGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRR--GALAGLDKLTSLSCHHNQIDV-LEDHSFRALS  313 (694)
Q Consensus       237 ~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~--~~~~~L~~L~~L~Ls~N~L~~-i~~~~f~~l~  313 (694)
                      ..+++|++|++++|.+.+.+ +..+..+++|++|++++|++++++.  ..+.++++|++|++++|.++. ++...|..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTV-FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTT-TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhh-hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            45667777777887777643 6667778888888888888876432  457777888888888888877 6666677778


Q ss_pred             ccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc----------C
Q psy8879         314 TLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV----------G  383 (694)
Q Consensus       314 ~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~----------~  383 (694)
                      +|+.|++++|++++..+..+.  ++|+.|+|++|+++.++...+ .+++|+.|++++|+++.+|...|.          .
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence            888888888888766555443  689999999999998887755 799999999999999999987443          7


Q ss_pred             CCC--CCcccccc-cccccccccCCccCccccCCcc
Q psy8879         384 FNT--MDLELIYS-GVWRHSTLLIPVMLSLCTRSSV  416 (694)
Q Consensus       384 ~Np--CdC~l~~~-~~wl~~~~~~~~~~~~C~~~~~  416 (694)
                      +||  |+|.+.|| ..|++........++.|+.+..
T Consensus       477 ~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~  512 (520)
T 2z7x_B          477 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK  512 (520)
T ss_dssp             SSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTCC
T ss_pred             CCCCcccCCchHHHHHHHHhccccCCCCCCcCCccc
Confidence            888  99999999 9999765555667889988743

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=100.00  E-value=3e-34  Score=309.23  Aligned_cols=299  Identities=22%  Similarity=0.293  Sum_probs=238.8

Q ss_pred             EcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCC
Q psy8879         101 DCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL  180 (694)
Q Consensus       101 dls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L  180 (694)
                      ++++++++.+|..+.  ++|++|++++|.++.++...|.++. +|++|++++|.++++++..|.++ ++|++|+|++|++
T Consensus        37 ~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l  112 (353)
T 2z80_A           37 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSL-GSLEHLDLSYNYL  112 (353)
T ss_dssp             ECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCC
T ss_pred             eCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCC-CCCCEEECCCCcC
Confidence            445666777776654  3788888888888888777776654 48888888888888887778888 8888888888888


Q ss_pred             CCCCcccccCCCCccEEEecCCCCCCCCc-cccCCCCCCcEEeccCC-cccchhhhhhccCcccccccCCCCcCCCCCCC
Q psy8879         181 YKLENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGN-RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGP  258 (694)
Q Consensus       181 ~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L~~L~Ls~N-~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p  258 (694)
                      +.+++..|.++++|++|++++|+++.++. ..|..+++|++|++++| .+....+..|.++++|++|++++|.+.+. .+
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~  191 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EP  191 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CT
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CH
Confidence            88887778888888888888888888876 67888888888888888 46666677888888888888888888763 47


Q ss_pred             CCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhh---cccccccccCCCCccccc----ccc
Q psy8879         259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR---ALSTLSHLDLAHNRIVAV----SGA  331 (694)
Q Consensus       259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~---~l~~L~~L~Ls~N~L~~i----~~~  331 (694)
                      ..+..+++|++|++++|.++.++...+..+++|++|++++|.++.++...+.   ..+.++.++++++.+++.    .+.
T Consensus       192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~  271 (353)
T 2z80_A          192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK  271 (353)
T ss_dssp             TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred             HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence            7888889999999999998888776667788999999999998877654433   245667777777776652    256


Q ss_pred             chhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcc-cccccccccccccCCccCcc
Q psy8879         332 SLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE-LIYSGVWRHSTLLIPVMLSL  410 (694)
Q Consensus       332 ~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~-l~~~~~wl~~~~~~~~~~~~  410 (694)
                      .+..+++|+.|+|++|++++++...|..+++|+.|++++|++.            |+|. +.|+..|++.........+.
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~------------~~~~~l~~l~~~~~~~~~~~~~~~~  339 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD------------CSCPRIDYLSRWLNKNSQKEQGSAK  339 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC------------CCHHHHHHHHHHHHHTTTTEESCCB
T ss_pred             HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc------------CcCCCcHHHHHHHHhccccCCCCcc
Confidence            6889999999999999999999988899999999999999999            9996 88999999754433345789


Q ss_pred             ccCCcc
Q psy8879         411 CTRSSV  416 (694)
Q Consensus       411 C~~~~~  416 (694)
                      |..+..
T Consensus       340 C~~p~~  345 (353)
T 2z80_A          340 CSGSGK  345 (353)
T ss_dssp             BTTTCC
T ss_pred             cCCCCC
Confidence            987644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.6e-33  Score=323.80  Aligned_cols=306  Identities=25%  Similarity=0.327  Sum_probs=206.4

Q ss_pred             cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCC--CCCCccccccC-CCCccEEEccCCCCCCCCccccc
Q psy8879         113 KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLL--SVVPTSALAPL-APNLDRLDLSHNQLYKLENTSFK  189 (694)
Q Consensus       113 ~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L--~~lp~~~~~~l-~~~L~~L~Ls~N~L~~i~~~~f~  189 (694)
                      .+..+++|++|++++|.+..+.+..|.++.. |++|++++|.+  ..++...|..+ .++|++|++++|+++++.+..|.
T Consensus       324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~  402 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS  402 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCCTTTTTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred             hcccCCCCCEEECCCCccCCCChhHhccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence            3444555566666666665555555554433 66666665542  23333333322 03566666666667776666777


Q ss_pred             CCCCccEEEecCCCCCC-CCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC-CCCCCCCCcccc
Q psy8879         190 GLSSLNFLDLSYNKLMT-LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP-LGPSTVPRLSSL  267 (694)
Q Consensus       190 ~L~~L~~L~Ls~N~l~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~-i~p~~~~~l~~L  267 (694)
                      ++++|++|++++|.+.+ +++..|..+++|++|++++|++.+..+..|..+++|+.|++++|.+.+. ..|..+..+++|
T Consensus       403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L  482 (680)
T 1ziw_A          403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL  482 (680)
T ss_dssp             TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred             CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence            77777777777777764 4446677777777777777777777777777777778888877776521 226677788888


Q ss_pred             ceeeccCCcccccccccccCCcccceecccCCccccccch--------hhhcccccccccCCCCccccccccchhccccc
Q psy8879         268 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDH--------SFRALSTLSHLDLAHNRIVAVSGASLAHLSNL  339 (694)
Q Consensus       268 ~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~--------~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L  339 (694)
                      +.|++++|+++++++..|.++++|++|++++|+++.++..        .|.++++|+.|+|++|+++.+++..|.++++|
T Consensus       483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L  562 (680)
T 1ziw_A          483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL  562 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence            8888888888888877788888888888888888766432        36777888888888888888877778888888


Q ss_pred             CeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc-----------CCCC--CCccc-ccccccccccc--c
Q psy8879         340 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV-----------GFNT--MDLEL-IYSGVWRHSTL--L  403 (694)
Q Consensus       340 ~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-----------~~Np--CdC~l-~~~~~wl~~~~--~  403 (694)
                      +.|+|++|+++++++..|..+++|+.|++++|+++++++..|.           .+||  |||+. .||..|++...  +
T Consensus       563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~  642 (680)
T 1ziw_A          563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI  642 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC----
T ss_pred             ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCccc
Confidence            8888888888888888888888888888888888888876442           6777  99996 99999997432  2


Q ss_pred             CC-ccCccccCCcccce
Q psy8879         404 IP-VMLSLCTRSSVVTR  419 (694)
Q Consensus       404 ~~-~~~~~C~~~~~~~~  419 (694)
                      .. ...+.|+.|...++
T Consensus       643 ~~~~~~~~C~~p~~~~g  659 (680)
T 1ziw_A          643 PELSSHYLCNTPPHYHG  659 (680)
T ss_dssp             -----------------
T ss_pred             ccccCCcEECCchHHCC
Confidence            22 24689988765444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=307.46  Aligned_cols=282  Identities=26%  Similarity=0.337  Sum_probs=262.3

Q ss_pred             CCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccE
Q psy8879          94 DERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR  172 (694)
Q Consensus        94 ~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~  172 (694)
                      ...|+.|++++|.++.+ |..|..+++|++|++++|.++.++...|.++. +|++|+|++|.++.+++..|.++ ++|++
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~  132 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDL-YNLKS  132 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTC-TTCCE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC-CCCEEECCCCccccCChhHcccc-ccCCE
Confidence            45899999999999887 67888999999999999999999988887765 59999999999999988889999 99999


Q ss_pred             EEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC
Q psy8879         173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL  252 (694)
Q Consensus       173 L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l  252 (694)
                      |+|++|.++.+.+..|.++++|++|++++|+++.+++..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|..
T Consensus       133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999988888999999999999999988


Q ss_pred             CCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccc
Q psy8879         253 AGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS  332 (694)
Q Consensus       253 ~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~  332 (694)
                      .+.+++. .....+|+.|++++|.+++++...|.++++|++|+|++|.++.+++..|.++++|+.|+|++|+++++.+..
T Consensus       213 ~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  291 (477)
T 2id5_A          213 LDTMTPN-CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA  291 (477)
T ss_dssp             CCEECTT-TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred             ccccCcc-cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence            7766444 444569999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         333 LAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       333 f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      |.++++|+.|+|++|+++++++..|..+++|+.|++++|+|.....
T Consensus       292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            9999999999999999999999999999999999999999986543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.5e-33  Score=317.49  Aligned_cols=332  Identities=23%  Similarity=0.335  Sum_probs=212.3

Q ss_pred             EccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccC
Q psy8879          74 CTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPN  152 (694)
Q Consensus        74 C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~  152 (694)
                      |+.....+..+|..+.     ..++.|++++|+++.+ |..+..+++|++|++++|.++.+.+.+|.++. +|++|++++
T Consensus        10 c~~~~~~l~~ip~~~~-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~   83 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT-----AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSD   83 (549)
T ss_dssp             EECTTSCCSSCCSCCC-----TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTT
T ss_pred             EECCCCccccccccCC-----CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-cCCEEECCC
Confidence            4434445666666543     3788888888888776 45677788888888888888888777777655 488888888


Q ss_pred             CCCCCCCccccccCCCCccEEEccCCCCCCCC-cccccCCCCccEEEecCCC-CCCCCccccCCCCCCcEEeccCCcccc
Q psy8879         153 NLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNK-LMTLSQDCLAPLVTLRVLRLQGNRLTV  230 (694)
Q Consensus       153 N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~-l~~i~~~~f~~L~~L~~L~Ls~N~l~~  230 (694)
                      |.++++++..|.++ ++|++|++++|.++.+. +..|+++++|++|++++|. +..+++..|..+++|++|++++|++++
T Consensus        84 n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           84 NHLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             SCCCSCCHHHHTTC-TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CccCccCHHHhccC-CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            88888888777887 88888888888887642 3467777777777777776 555555566677777777777776665


Q ss_pred             hhhhhhcc------------------------CcccccccCCCCcCCCCC----C-------------------------
Q psy8879         231 SVVAALQG------------------------LRSVTDLDLSHNLLAGPL----G-------------------------  257 (694)
Q Consensus       231 ~~~~~~~~------------------------L~~L~~L~Ls~N~l~~~i----~-------------------------  257 (694)
                      ..|..+..                        +++|++|++++|.+.+..    .                         
T Consensus       163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  242 (549)
T 2z81_A          163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE  242 (549)
T ss_dssp             ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred             cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence            44444332                        345555555555554310    0                         


Q ss_pred             --------------------------------------------------------------------------------
Q psy8879         258 --------------------------------------------------------------------------------  257 (694)
Q Consensus       258 --------------------------------------------------------------------------------  257 (694)
                                                                                                      
T Consensus       243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l  322 (549)
T 2z81_A          243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV  322 (549)
T ss_dssp             HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred             HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence                                                                                            


Q ss_pred             ---CCC-CCCccccceeeccCCccccccc---ccccCCcccceecccCCccccccc--hhhhcccccccccCCCCccccc
Q psy8879         258 ---PST-VPRLSSLKVLSIAHNQFSSVRR---GALAGLDKLTSLSCHHNQIDVLED--HSFRALSTLSHLDLAHNRIVAV  328 (694)
Q Consensus       258 ---p~~-~~~l~~L~~L~Ls~N~L~~i~~---~~~~~L~~L~~L~Ls~N~L~~i~~--~~f~~l~~L~~L~Ls~N~L~~i  328 (694)
                         |.. +..+++|++|++++|.+++..+   ..+..+++|++|++++|+++.++.  ..+..+++|+.|++++|+++++
T Consensus       323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l  402 (549)
T 2z81_A          323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM  402 (549)
T ss_dssp             CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC
T ss_pred             ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC
Confidence               000 0124555666666666554321   124445555555555555554432  3344555555555555555443


Q ss_pred             cccchh-----------------------------------------cccccCeeecCCCCCCCcChhhhCCCCCCCEEE
Q psy8879         329 SGASLA-----------------------------------------HLSNLTTLDLSHNFLRALTQDLITPLKSLQELR  367 (694)
Q Consensus       329 ~~~~f~-----------------------------------------~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~  367 (694)
                      +. .+.                                         .+++|+.|+|++|+++.++.  ...+++|+.|+
T Consensus       403 p~-~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~  479 (549)
T 2z81_A          403 PD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMK  479 (549)
T ss_dssp             CS-CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEE
T ss_pred             Ch-hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC--cccCccCCEEe
Confidence            21 111                                         45666677777777776665  23577888888


Q ss_pred             ccCCCCCCCCccccc----------CCCC--CCcc-cccccccccccccCCccCccccCCc
Q psy8879         368 LDDNDISMEPECIYV----------GFNT--MDLE-LIYSGVWRHSTLLIPVMLSLCTRSS  415 (694)
Q Consensus       368 Ls~N~L~~l~~~~f~----------~~Np--CdC~-l~~~~~wl~~~~~~~~~~~~C~~~~  415 (694)
                      |++|+++++++..|.          ++||  |+|. +.|+..|++.........+.|..+.
T Consensus       480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~~~~  540 (549)
T 2z81_A          480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  540 (549)
T ss_dssp             CCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCCBBTTTC
T ss_pred             cCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCCeECCCC
Confidence            888888888776554          7888  9998 5788889975555566678897653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=312.18  Aligned_cols=153  Identities=25%  Similarity=0.301  Sum_probs=109.9

Q ss_pred             ccccceeeccCCccccccc-ccccCCcccceecccCCccccccchhhhcccccccccCCCCccc-cccccchhcccccCe
Q psy8879         264 LSSLKVLSIAHNQFSSVRR-GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV-AVSGASLAHLSNLTT  341 (694)
Q Consensus       264 l~~L~~L~Ls~N~L~~i~~-~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~-~i~~~~f~~l~~L~~  341 (694)
                      +++|+.|++++|.+.+..+ ..+.++++|++|++++|.++...+..|.++++|+.|++++|+++ +..|..+..+++|+.
T Consensus       395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  474 (570)
T 2z63_A          395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  474 (570)
T ss_dssp             CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence            3344444444444444332 34556666777777777776666667777888888888888887 455677888899999


Q ss_pred             eecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc----------CCCC--CCccccccc-ccccccccCCccC
Q psy8879         342 LDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV----------GFNT--MDLELIYSG-VWRHSTLLIPVML  408 (694)
Q Consensus       342 L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~----------~~Np--CdC~l~~~~-~wl~~~~~~~~~~  408 (694)
                      |+|++|+++++++..+..+++|+.|++++|+++++++..|.          .+||  |+|...|+. .|++.........
T Consensus       475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~  554 (570)
T 2z63_A          475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS  554 (570)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESC
T ss_pred             EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCc
Confidence            99999999998888888999999999999999999887654          6788  999988887 9987432221122


Q ss_pred             ccccCCcc
Q psy8879         409 SLCTRSSV  416 (694)
Q Consensus       409 ~~C~~~~~  416 (694)
                      ..|+.+..
T Consensus       555 ~~C~~~~~  562 (570)
T 2z63_A          555 AKCSGSGK  562 (570)
T ss_dssp             CBBTTTCC
T ss_pred             hhhCCCCC
Confidence            28977633

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.98  E-value=2.2e-32  Score=288.33  Aligned_cols=281  Identities=27%  Similarity=0.343  Sum_probs=184.0

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .++|++++++.+|..+.  ++|++|++++|.++.++...|.++. +|++|++++|.++.+..                  
T Consensus        11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~------------------   69 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGC------------------   69 (306)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCEEEE------------------
T ss_pred             EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccCcccC------------------
Confidence            35666677777776543  3455555555555555544444433 25555555555443310                  


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhh-hhhccCcccccccCCCCcCCCCCC
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV-AALQGLRSVTDLDLSHNLLAGPLG  257 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~~L~Ls~N~l~~~i~  257 (694)
                           .+..+.++++|++|++++|.+..++.. +..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+. .
T Consensus        70 -----~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~  142 (306)
T 2z66_A           70 -----CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-F  142 (306)
T ss_dssp             -----EEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-S
T ss_pred             -----cccccccccccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-c
Confidence                 022333344444444444444443322 4444555555555555443332 3455555555555555555442 2


Q ss_pred             CCCCCCccccceeeccCCcccc-cccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879         258 PSTVPRLSSLKVLSIAHNQFSS-VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL  336 (694)
Q Consensus       258 p~~~~~l~~L~~L~Ls~N~L~~-i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l  336 (694)
                      +..+..+++|++|++++|.+++ ..+..+.++++|++|++++|+++.+++..|..+++|+.|+|++|+++++++..+..+
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  222 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  222 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence            5556666777777777777765 455667777888888888888888777778888888888888888888888788889


Q ss_pred             cccCeeecCCCCCCCcChhhhCCCC-CCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccc--cCCccCccccC
Q psy8879         337 SNLTTLDLSHNFLRALTQDLITPLK-SLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTL--LIPVMLSLCTR  413 (694)
Q Consensus       337 ~~L~~L~Ls~N~L~~l~~~~~~~l~-~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~--~~~~~~~~C~~  413 (694)
                      ++|+.|+|++|++++..+..+..++ +|+.|++++|+|+            |+|+..||..|++...  ......+.|..
T Consensus       223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~------------~~c~~~~~~~~l~~~~~~~~~~~~~~C~~  290 (306)
T 2z66_A          223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA------------CTCEHQSFLQWIKDQRQLLVEVERMECAT  290 (306)
T ss_dssp             TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE------------CSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred             ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee------------cccChHHHHHHHHhhhhhhccccccccCC
Confidence            9999999999999998888888884 9999999999999            9999999999997432  34556788987


Q ss_pred             Ccccce
Q psy8879         414 SSVVTR  419 (694)
Q Consensus       414 ~~~~~~  419 (694)
                      |...++
T Consensus       291 p~~~~g  296 (306)
T 2z66_A          291 PSDKQG  296 (306)
T ss_dssp             SGGGTT
T ss_pred             chhhCC
Confidence            665443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=7.7e-32  Score=294.13  Aligned_cols=307  Identities=23%  Similarity=0.285  Sum_probs=229.1

Q ss_pred             CCeeEEEcCCCCCCCCCcc-ccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879          95 ERVSLLDCTLSNVTVLPGK-FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL  173 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~-~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L  173 (694)
                      ..++.++++++.++.+|.. +..+++|++|++++|.+..++...|.++. +|++|++++|.++.+++..|.++ ++|++|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L  122 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNV-PLLTVL  122 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC-TTCCEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCC-CCCCEE
Confidence            4788888988888888876 45678899999998888888887777665 49999999999988888888888 889999


Q ss_pred             EccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccC--------------
Q psy8879         174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGL--------------  239 (694)
Q Consensus       174 ~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L--------------  239 (694)
                      +|++|.++.+++..|.++++|++|++++|.++++.+..|..+++|++|++++|++++.....+.++              
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence            999998888888778888899999999998888888888888889999999888876533322221              


Q ss_pred             --cccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccc
Q psy8879         240 --RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH  317 (694)
Q Consensus       240 --~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~  317 (694)
                        ++|++|++++|.+.+ + +.  ...++|+.|++++|.+++.  ..+.++++|++|++++|.++.+.+..|..+++|+.
T Consensus       203 ~~~~L~~L~l~~n~l~~-~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          203 IPIAVEELDASHNSINV-V-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             CCSSCSEEECCSSCCCE-E-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             CCCcceEEECCCCeeee-c-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence              234444444444442 1 11  1235778888888888776  35777788888888888888877777888888888


Q ss_pred             ccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc-------CCCC--CC
Q psy8879         318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV-------GFNT--MD  388 (694)
Q Consensus       318 L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-------~~Np--Cd  388 (694)
                      |+|++|++++++ ..+..+++|+.|+|++|+++++++. +..+++|+.|++++|+++.++...+.       .+||  |+
T Consensus       277 L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          277 LYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             EECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             EECCCCcCcccC-cccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence            888888888774 3446678888888888888877654 45677888888888888877654433       6777  88


Q ss_pred             cccccccccccccccCCccCccccC
Q psy8879         389 LELIYSGVWRHSTLLIPVMLSLCTR  413 (694)
Q Consensus       389 C~l~~~~~wl~~~~~~~~~~~~C~~  413 (694)
                      |...++..|.+...  ......|..
T Consensus       355 ~~~~~~~~~~~~~~--~~~~~~c~~  377 (390)
T 3o6n_A          355 SLRALFRNVARPAV--DDADQHCKI  377 (390)
T ss_dssp             HHHHHTTTCCTTTB--CCCCSCCCT
T ss_pred             hHHHHHHHHHhhcc--cccCceecc
Confidence            88888887776432  223445654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.98  E-value=4.8e-32  Score=324.94  Aligned_cols=106  Identities=25%  Similarity=0.327  Sum_probs=71.1

Q ss_pred             hhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc------
Q psy8879         309 FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV------  382 (694)
Q Consensus       309 f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~------  382 (694)
                      |.++++|+.|+|++|+++++++..|.++++|+.|+|++|+++++++..+.  ++|+.|+|++|+++++++..|.      
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~  553 (844)
T 3j0a_A          476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLD  553 (844)
T ss_dssp             SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEE
T ss_pred             hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEE
Confidence            44555666666666666666666666666666666666666666665544  5666777777777666666554      


Q ss_pred             -CCCC--CCcccccccccccccc---cCCccCccccCCcc
Q psy8879         383 -GFNT--MDLELIYSGVWRHSTL---LIPVMLSLCTRSSV  416 (694)
Q Consensus       383 -~~Np--CdC~l~~~~~wl~~~~---~~~~~~~~C~~~~~  416 (694)
                       ++||  |+|++.||..|+....   ..+...+.|.+|..
T Consensus       554 l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~  593 (844)
T 3j0a_A          554 ITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDS  593 (844)
T ss_dssp             EEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSS
T ss_pred             ecCCCcccccccHHHHHHHHhcCcccccccccCccCCchh
Confidence             6788  9999999999986322   23445788987654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=2.3e-31  Score=295.44  Aligned_cols=279  Identities=23%  Similarity=0.322  Sum_probs=244.1

Q ss_pred             eEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCC-CCCccccccCCCCccEEEcc
Q psy8879          98 SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDRLDLS  176 (694)
Q Consensus        98 ~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~-~lp~~~~~~l~~~L~~L~Ls  176 (694)
                      +.++|++++++.+|. +.  ++|++|++++|.++.+.+..|.++. +|++|++++|.+. .+++..|.++ ++|++|+|+
T Consensus        13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTC-TTCCEEECT
T ss_pred             cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCc-cccEEECcCCcccceECccccccc-ccCCEEeCC
Confidence            358999999999998 33  6899999999999999888888765 4999999999987 6778889999 999999999


Q ss_pred             CCCCCCCCcccccCCCCccEEEecCCCCCCCCc--cccCCCCCCcEEeccCCcccchhhhh-hccCcccccccCCCCcCC
Q psy8879         177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ--DCLAPLVTLRVLRLQGNRLTVSVVAA-LQGLRSVTDLDLSHNLLA  253 (694)
Q Consensus       177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~--~~f~~L~~L~~L~Ls~N~l~~~~~~~-~~~L~~L~~L~Ls~N~l~  253 (694)
                      +|.++.+.+..|.++++|++|++++|++++..+  ..|..+++|++|++++|++++..|.. +.++++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            999999988999999999999999999998444  44899999999999999999887776 899999999999999998


Q ss_pred             CCCCCCCCCCc----------------------------------cccceeeccCCcccccccccccC------------
Q psy8879         254 GPLGPSTVPRL----------------------------------SSLKVLSIAHNQFSSVRRGALAG------------  287 (694)
Q Consensus       254 ~~i~p~~~~~l----------------------------------~~L~~L~Ls~N~L~~i~~~~~~~------------  287 (694)
                      +.. +..+..+                                  ++|++|++++|.+++..+..+..            
T Consensus       168 ~~~-~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          168 SIC-EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             CCC-TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             ccC-hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            743 5545433                                  67888999988876544332211            


Q ss_pred             ---------------------------CcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccC
Q psy8879         288 ---------------------------LDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLT  340 (694)
Q Consensus       288 ---------------------------L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~  340 (694)
                                                 .++|++|++++|.++.+.+..|..+++|+.|+|++|+++++.+..|.++++|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  326 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL  326 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence                                       25799999999999999898999999999999999999999999999999999


Q ss_pred             eeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc
Q psy8879         341 TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV  382 (694)
Q Consensus       341 ~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~  382 (694)
                      .|+|++|+++++++..+..+++|+.|+|++|+++.+++..|.
T Consensus       327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  368 (455)
T 3v47_A          327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL  368 (455)
T ss_dssp             EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc
Confidence            999999999999999999999999999999999988776654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.3e-30  Score=278.00  Aligned_cols=267  Identities=25%  Similarity=0.384  Sum_probs=221.2

Q ss_pred             eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879          97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS  176 (694)
Q Consensus        97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls  176 (694)
                      ++.++|++++++.+|..+.  +.++.|++++|.++.++...|.++. +|++|++++|.++.+.+..|.++ ++|++|+|+
T Consensus        33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls  108 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPL-VKLERLYLS  108 (330)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTC-TTCCEEECC
T ss_pred             CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCC-CCCCEEECC
Confidence            4567888888888887664  5788899999999888887777665 49999999999988877788888 899999999


Q ss_pred             CCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccc--hhhhhhccCcccccccCCCCcCCC
Q psy8879         177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV--SVVAALQGLRSVTDLDLSHNLLAG  254 (694)
Q Consensus       177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~--~~~~~~~~L~~L~~L~Ls~N~l~~  254 (694)
                      +|.++.++...+   ++|++|++++|.++++.+..|..+++|++|++++|.+..  ..+..+.++++|++|++++|.+.+
T Consensus       109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            998888775443   688999999999998888888889999999999998863  567788888999999999998875


Q ss_pred             CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879         255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA  334 (694)
Q Consensus       255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~  334 (694)
                       + |..+.  ++|++|++++|.++++.+..|.++++|++|++++|.++.+++..|..+++|+.|+|++|+++.+ |..+.
T Consensus       186 -l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~  260 (330)
T 1xku_A          186 -I-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLA  260 (330)
T ss_dssp             -C-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTT
T ss_pred             -C-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-Chhhc
Confidence             4 33333  7889999999999988888888899999999999999888888888899999999999999877 44578


Q ss_pred             cccccCeeecCCCCCCCcChhhhCC------CCCCCEEEccCCCCCC
Q psy8879         335 HLSNLTTLDLSHNFLRALTQDLITP------LKSLQELRLDDNDISM  375 (694)
Q Consensus       335 ~l~~L~~L~Ls~N~L~~l~~~~~~~------l~~L~~L~Ls~N~L~~  375 (694)
                      .+++|+.|+|++|+++++++..|..      ...++.|++++|++..
T Consensus       261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            8899999999999999888877754      3678899999998863

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.1e-30  Score=278.96  Aligned_cols=265  Identities=26%  Similarity=0.396  Sum_probs=183.0

Q ss_pred             eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879          97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS  176 (694)
Q Consensus        97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls  176 (694)
                      ++.++|++++++.+|..+.  ++|+.|++++|.++.+.+..|.++. +|++|++++|.++.+++..|.++ ++|++|+|+
T Consensus        35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~  110 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPL-RKLQKLYIS  110 (332)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTC-TTCCEEECC
T ss_pred             CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCc-CCCCEEECC
Confidence            3456667777777776553  4677777777777777666666554 37777777777777766667777 777777777


Q ss_pred             CCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccc--hhhhhhccCcccccccCCCCcCCC
Q psy8879         177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV--SVVAALQGLRSVTDLDLSHNLLAG  254 (694)
Q Consensus       177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~--~~~~~~~~L~~L~~L~Ls~N~l~~  254 (694)
                      +|.++.++...+   ++|++|++++|+++.+++..|..+++|++|++++|.++.  ..+..+..+ +|++|++++|.+.+
T Consensus       111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            777776665433   567777777777777777667777777777777777752  455666666 77777777777765


Q ss_pred             CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879         255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA  334 (694)
Q Consensus       255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~  334 (694)
                       + |..+.  ++|++|++++|.++++++..|.++++|++|++++|+++.+++..|..+++|+.|++++|+++.++ ..+.
T Consensus       187 -l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l~  261 (332)
T 2ft3_A          187 -I-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLP  261 (332)
T ss_dssp             -C-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC-TTGG
T ss_pred             -c-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC-hhhh
Confidence             3 33332  56777777777777776666777777777777777777777667777777777777777777653 3466


Q ss_pred             cccccCeeecCCCCCCCcChhhhCCC------CCCCEEEccCCCCC
Q psy8879         335 HLSNLTTLDLSHNFLRALTQDLITPL------KSLQELRLDDNDIS  374 (694)
Q Consensus       335 ~l~~L~~L~Ls~N~L~~l~~~~~~~l------~~L~~L~Ls~N~L~  374 (694)
                      .+++|+.|++++|+++++++..|...      .+|+.|++++|++.
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            77777777777777777776655442      55677777777776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=6.9e-31  Score=302.44  Aligned_cols=304  Identities=21%  Similarity=0.295  Sum_probs=261.7

Q ss_pred             CCCCC-CCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCCCCCCCCcchhcC
Q psy8879          63 LCACD-LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSGELKNISDGAFIG  140 (694)
Q Consensus        63 ~C~C~-~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~  140 (694)
                      .|.|. ....+.|.+.  .+..+|..+.     ..++.||+++|.++.+ |..|..+++|++|++++|.+..+.+.+|.+
T Consensus         7 ~C~~~~~~~~~~c~~~--~l~~iP~~l~-----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~   79 (606)
T 3t6q_A            7 KCIEKEVNKTYNCENL--GLNEIPGTLP-----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS   79 (606)
T ss_dssp             CCEEEETTTEEECTTS--CCSSCCTTSC-----TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred             ceecccCCceEECCCC--CcccCcCCCC-----CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC
Confidence            67774 3456777553  4666776653     2789999999999988 567889999999999999999999999988


Q ss_pred             CCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcE
Q psy8879         141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV  220 (694)
Q Consensus       141 l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~  220 (694)
                      +.. |++|+|++|.++.+++..|.++ ++|++|++++|.++.+.+..|.++++|++|++++|++.++....+..+++|++
T Consensus        80 l~~-L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  157 (606)
T 3t6q_A           80 QHR-LDTLVLTANPLIFMAETALSGP-KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV  157 (606)
T ss_dssp             CTT-CCEEECTTCCCSEECTTTTSSC-TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred             ccc-cCeeeCCCCcccccChhhhccc-ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence            764 9999999999999988889999 99999999999999998888999999999999999999987555667999999


Q ss_pred             EeccCCcccchhhhhhccCcccc--cccCCCCcCCCCCCCCCCCCc----------------------------------
Q psy8879         221 LRLQGNRLTVSVVAALQGLRSVT--DLDLSHNLLAGPLGPSTVPRL----------------------------------  264 (694)
Q Consensus       221 L~Ls~N~l~~~~~~~~~~L~~L~--~L~Ls~N~l~~~i~p~~~~~l----------------------------------  264 (694)
                      |++++|++++..+..|..+++|+  .|++++|.+.+. .+..+...                                  
T Consensus       158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~  236 (606)
T 3t6q_A          158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI-EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE  236 (606)
T ss_dssp             EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE-CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCT
T ss_pred             EEcccCcccccChhhhhhhcccceeEEecCCCccCcc-ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhc
Confidence            99999999988899999999999  899999998763 34443321                                  


Q ss_pred             -----------------cccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcccc
Q psy8879         265 -----------------SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA  327 (694)
Q Consensus       265 -----------------~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~  327 (694)
                                       .+|+.|++++|.++++++..|.++++|++|++++|.++.++. .+..+++|++|++++|++++
T Consensus       237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~  315 (606)
T 3t6q_A          237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFEN  315 (606)
T ss_dssp             TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSB
T ss_pred             cccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCc
Confidence                             167888899999999988889999999999999999998765 57889999999999999999


Q ss_pred             ccccchhcccccCeeecCCCCCC-CcChhhhCCCCCCCEEEccCCCCCCCC
Q psy8879         328 VSGASLAHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDNDISMEP  377 (694)
Q Consensus       328 i~~~~f~~l~~L~~L~Ls~N~L~-~l~~~~~~~l~~L~~L~Ls~N~L~~l~  377 (694)
                      +.+..+..+++|+.|++++|.+. .+++..+..+++|+.|++++|+++.++
T Consensus       316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence            98888999999999999999887 566677888999999999999998765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=8.9e-31  Score=302.16  Aligned_cols=307  Identities=23%  Similarity=0.278  Sum_probs=220.7

Q ss_pred             CCeeEEEcCCCCCCCCCcc-ccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879          95 ERVSLLDCTLSNVTVLPGK-FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL  173 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~-~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L  173 (694)
                      ..++.++++++.++.+|.. +..+++|+.|++++|.+..+++..|.++. +|++|+|++|.++.+++..|.++ ++|++|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L  128 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNV-PLLTVL  128 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC-TTCCEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCC-CCCCEE
Confidence            4677888888888888765 34577888888888888888777776654 48888888888888888777887 888888


Q ss_pred             EccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhcc---------------
Q psy8879         174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG---------------  238 (694)
Q Consensus       174 ~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~---------------  238 (694)
                      +|++|.++.+++..|+++++|++|+|++|.++++++..|..+++|++|++++|.+++.....+.+               
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            88888888888777788888888888888888888877888888888888888887653332221               


Q ss_pred             -CcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccc
Q psy8879         239 -LRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH  317 (694)
Q Consensus       239 -L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~  317 (694)
                       .++|+.|++++|.+.. + +..+  .++|+.|+|++|.+++.  ..+.++++|++|+|++|.++.+.+..|..+++|+.
T Consensus       209 ~~~~L~~L~ls~n~l~~-~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          209 IPIAVEELDASHNSINV-V-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             CCTTCSEEECCSSCCCE-E-ECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             CCchhheeeccCCcccc-c-cccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence             1234444444444432 1 1111  24677788888877764  45777888888888888888887777888888888


Q ss_pred             ccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc-------CCCC--CC
Q psy8879         318 LDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV-------GFNT--MD  388 (694)
Q Consensus       318 L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-------~~Np--Cd  388 (694)
                      |+|++|++++++ ..+..+++|+.|+|++|.++++++. +..+++|+.|+|++|+++.++...+.       .+||  |+
T Consensus       283 L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          283 LYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             EECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             EECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence            888888888873 4456678888888888888877654 45677888888888888877654443       6777  88


Q ss_pred             cccccccccccccccCCccCccccC
Q psy8879         389 LELIYSGVWRHSTLLIPVMLSLCTR  413 (694)
Q Consensus       389 C~l~~~~~wl~~~~~~~~~~~~C~~  413 (694)
                      |...|+..|....  .......|..
T Consensus       361 ~~~~~~~~~~~~~--~~~~~~~C~~  383 (597)
T 3oja_B          361 SLRALFRNVARPA--VDDADQHCKI  383 (597)
T ss_dssp             HHHHHTTTCCTTT--BCCCCCCCCT
T ss_pred             hHHHHHHHHhhhc--cccccccCCc
Confidence            8777777766532  2223445653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=4.2e-30  Score=300.12  Aligned_cols=308  Identities=26%  Similarity=0.348  Sum_probs=256.5

Q ss_pred             CCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCC
Q psy8879          64 CACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLS  142 (694)
Q Consensus        64 C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~  142 (694)
                      |.|. ...+.|...  .+..+|..+.     .+++.|++++|.++.++. .|.++++|++|++++|.+..+.+.+|.++.
T Consensus         2 C~~~-~~~~~cs~~--~L~~ip~~~~-----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   73 (680)
T 1ziw_A            2 CTVS-HEVADCSHL--KLTQVPDDLP-----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP   73 (680)
T ss_dssp             --CB-SSEEECCSS--CCSSCCSCSC-----TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCT
T ss_pred             ceeE-CCeeECCCC--CccccccccC-----CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhccc
Confidence            6665 346777653  4566666553     489999999999998876 588899999999999999999998888876


Q ss_pred             CCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEe
Q psy8879         143 SPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLR  222 (694)
Q Consensus       143 ~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~  222 (694)
                      . |++|+|++|.++.+++..|.++ ++|++|+|++|.++++++..|+++++|++|++++|.+++..+..|..+++|++|+
T Consensus        74 ~-L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A           74 M-LKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL  151 (680)
T ss_dssp             T-CCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred             C-cCEEECCCCccCccChhhhccC-CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence            4 9999999999999999889999 9999999999999999989999999999999999999999999899999999999


Q ss_pred             ccCCcccchhhhhhc--cCcccccccCCCCcCCCCCCCCCCCCc---------------------------cccceeecc
Q psy8879         223 LQGNRLTVSVVAALQ--GLRSVTDLDLSHNLLAGPLGPSTVPRL---------------------------SSLKVLSIA  273 (694)
Q Consensus       223 Ls~N~l~~~~~~~~~--~L~~L~~L~Ls~N~l~~~i~p~~~~~l---------------------------~~L~~L~Ls  273 (694)
                      +++|.+++..+..+.  .+++|++|++++|.+.+. .+..+..+                           ++|+.|+++
T Consensus       152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~  230 (680)
T 1ziw_A          152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS  230 (680)
T ss_dssp             CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB-CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred             ccCCcccccCHHHhhccccccccEEECCCCccccc-ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence            999999988777765  458999999999999874 46655544                           456777788


Q ss_pred             CCcccccccccccCCcc--cceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCC-
Q psy8879         274 HNQFSSVRRGALAGLDK--LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR-  350 (694)
Q Consensus       274 ~N~L~~i~~~~~~~L~~--L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~-  350 (694)
                      +|.++++.+..|.+++.  |++|++++|.++.+++..|..+++|+.|++++|++.++.+..|.++++|+.|++++|... 
T Consensus       231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~  310 (680)
T 1ziw_A          231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ  310 (680)
T ss_dssp             TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred             CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence            88888887777877755  889999999888888888888888999999999888888888888888888888876543 


Q ss_pred             --------CcChhhhCCCCCCCEEEccCCCCCCCCccccc
Q psy8879         351 --------ALTQDLITPLKSLQELRLDDNDISMEPECIYV  382 (694)
Q Consensus       351 --------~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~  382 (694)
                              .+....+..+++|+.|++++|+++++++..|.
T Consensus       311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  350 (680)
T 1ziw_A          311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT  350 (680)
T ss_dssp             ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT
T ss_pred             ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc
Confidence                    23334577788888888888888887776664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1.9e-30  Score=308.09  Aligned_cols=280  Identities=24%  Similarity=0.253  Sum_probs=209.9

Q ss_pred             CeeEEEcCCCCCC-CCCccccC--CCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccE
Q psy8879          96 RVSLLDCTLSNVT-VLPGKFLE--GVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR  172 (694)
Q Consensus        96 ~L~~Ldls~n~l~-~lp~~~~~--~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~  172 (694)
                      .|+.|++++|.+. .+|..+..  +++|++|++++|.+....+..|..+. +|++|++++|.+++..+..+..+ ++|++
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~  446 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSL-SKLRD  446 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGC-TTCCE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcC-CCCCE
Confidence            6777777777764 34555444  55677777777777655555555544 37777777777765555566666 67777


Q ss_pred             EEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC
Q psy8879         173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL  252 (694)
Q Consensus       173 L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l  252 (694)
                      |++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus       447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence            77777777766666666777777777777777766666677777777777777777766777777777777777777777


Q ss_pred             CCCCCCCCCCCccccceeeccCCccccc----------------------------------------------------
Q psy8879         253 AGPLGPSTVPRLSSLKVLSIAHNQFSSV----------------------------------------------------  280 (694)
Q Consensus       253 ~~~i~p~~~~~l~~L~~L~Ls~N~L~~i----------------------------------------------------  280 (694)
                      .+.+ |..+..+++|+.|++++|.+++.                                                    
T Consensus       527 ~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  605 (768)
T 3rgz_A          527 SGNI-PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN  605 (768)
T ss_dssp             EEEC-CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred             cCcC-CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence            6544 56666677777777777766532                                                    


Q ss_pred             ------------------ccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCee
Q psy8879         281 ------------------RRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTL  342 (694)
Q Consensus       281 ------------------~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L  342 (694)
                                        .+..+.++++|+.|+|++|++++..+..|+.++.|+.|+|++|++++..|..|+++++|+.|
T Consensus       606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L  685 (768)
T 3rgz_A          606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL  685 (768)
T ss_dssp             GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence                              22335556789999999999998888899999999999999999999999999999999999


Q ss_pred             ecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         343 DLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       343 ~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      ||++|++++..|..+..+++|++|++++|++++..+
T Consensus       686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             ECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            999999999888889999999999999999986443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=2.2e-30  Score=270.49  Aligned_cols=254  Identities=29%  Similarity=0.365  Sum_probs=177.9

Q ss_pred             cEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEec
Q psy8879         121 HGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS  200 (694)
Q Consensus       121 ~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls  200 (694)
                      +.++.+++.++.++.+    .+++|++|++++|.++.+++..|..+ ++|++|+|++|.++.+.+..|.++++|++|+++
T Consensus        14 ~~~~c~~~~l~~ip~~----~~~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCSSCCTT----CCTTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcccCCcC----CCCCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            3455566666655432    22345555665555555555555555 555555555555555555555555555555555


Q ss_pred             CCC-CCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccc
Q psy8879         201 YNK-LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS  279 (694)
Q Consensus       201 ~N~-l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~  279 (694)
                      +|. +..+.+..|..+++|++|                        ++++|.+.+ +.+..+..+++|++|++++|.+++
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L------------------------~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~  143 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTL------------------------HLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQA  143 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEE------------------------ECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCccccCHHHhcCCcCCCEE------------------------ECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccc
Confidence            554 555544444444455544                        455554443 235556666677777777777777


Q ss_pred             cccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCC
Q psy8879         280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITP  359 (694)
Q Consensus       280 i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~  359 (694)
                      +++..|.++++|++|++++|+++.+++..|..+++|+.|++++|+++++.+..|..+++|+.|+|++|+++++++..+..
T Consensus       144 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  223 (285)
T 1ozn_A          144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (285)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence            76666777788888888888888887777888888999999999999988888999999999999999999999999999


Q ss_pred             CCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccccCCccCccccCCccc
Q psy8879         360 LKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVV  417 (694)
Q Consensus       360 l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~~~~~~~~C~~~~~~  417 (694)
                      +++|+.|++++|+|.            |+|...|+..|++... .....+.|..|...
T Consensus       224 l~~L~~L~l~~N~~~------------c~~~~~~~~~~l~~~~-~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          224 LRALQYLRLNDNPWV------------CDCRARPLWAWLQKFR-GSSSEVPCSLPQRL  268 (285)
T ss_dssp             CTTCCEEECCSSCEE------------CSGGGHHHHHHHHHCC-SEECCCBEEESGGG
T ss_pred             CcccCEEeccCCCcc------------CCCCcHHHHHHHHhcc-cccCccccCCchHh
Confidence            999999999999999            9999999999997432 33446778766543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=3.9e-29  Score=266.87  Aligned_cols=297  Identities=23%  Similarity=0.367  Sum_probs=253.8

Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCCC
Q psy8879          53 PWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELK  131 (694)
Q Consensus        53 ~~~Cp~~~~~~C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i~  131 (694)
                      ...||.    .|.|.. ..+.|...  .+..+|..+.     ..++.|++++|.++.++ ..+..+++|++|++++|.++
T Consensus        24 ~~~cp~----~c~c~l-~~l~~~~~--~l~~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~   91 (332)
T 2ft3_A           24 SAMCPF----GCHCHL-RVVQCSDL--GLKAVPKEIS-----PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS   91 (332)
T ss_dssp             -CCCCS----SCEEET-TEEECCSS--CCSSCCSCCC-----TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCCCC----CCcccC-CEEECCCC--CccccCCCCC-----CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC
Confidence            345776    788874 45777654  3455555442     38999999999999885 47889999999999999999


Q ss_pred             CCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCC--CCc
Q psy8879         132 NISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT--LSQ  209 (694)
Q Consensus       132 ~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~--i~~  209 (694)
                      .+.+..|.++. +|++|++++|.++.+|...+    ++|++|++++|.++.+++..|.++++|++|++++|.++.  +.+
T Consensus        92 ~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  166 (332)
T 2ft3_A           92 KIHEKAFSPLR-KLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP  166 (332)
T ss_dssp             EECGGGSTTCT-TCCEEECCSSCCCSCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred             ccCHhHhhCcC-CCCEEECCCCcCCccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence            99888887765 49999999999999988643    689999999999999999899999999999999999964  677


Q ss_pred             cccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCc
Q psy8879         210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD  289 (694)
Q Consensus       210 ~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~  289 (694)
                      ..|..+ +|++|++++|++++ +|..+.  ++|++|++++|.+.+ +.+..+..+++|+.|++++|.++++++..+..++
T Consensus       167 ~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~  241 (332)
T 2ft3_A          167 GAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP  241 (332)
T ss_dssp             TSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred             ccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence            778888 99999999999986 444443  689999999999997 4578899999999999999999999988899999


Q ss_pred             ccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc------cccCeeecCCCCCC--CcChhhhCCCC
Q psy8879         290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL------SNLTTLDLSHNFLR--ALTQDLITPLK  361 (694)
Q Consensus       290 ~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l------~~L~~L~Ls~N~L~--~l~~~~~~~l~  361 (694)
                      +|++|++++|+++.++. .+..+++|+.|++++|+++++++..|...      ..|+.|++++|.+.  ++++..|..++
T Consensus       242 ~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~  320 (332)
T 2ft3_A          242 TLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT  320 (332)
T ss_dssp             TCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred             CCCEEECCCCcCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence            99999999999998876 48899999999999999999988877653      67999999999998  78888999999


Q ss_pred             CCCEEEccCCC
Q psy8879         362 SLQELRLDDND  372 (694)
Q Consensus       362 ~L~~L~Ls~N~  372 (694)
                      +|+.+++++|+
T Consensus       321 ~L~~l~l~~n~  331 (332)
T 2ft3_A          321 DRLAIQFGNYK  331 (332)
T ss_dssp             CSTTEEC----
T ss_pred             hhhhhhccccc
Confidence            99999999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.6e-29  Score=266.76  Aligned_cols=298  Identities=22%  Similarity=0.372  Sum_probs=253.5

Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCC
Q psy8879          53 PWSCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELK  131 (694)
Q Consensus        53 ~~~Cp~~~~~~C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~  131 (694)
                      ...||.    .|.|.. ..+.|....  +..+|..+.     ..++.|++++|+++.++. .+..+++|++|++++|.++
T Consensus        22 ~~~cp~----~c~c~l-~~l~~~~~~--l~~lp~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~   89 (330)
T 1xku_A           22 GPVCPF----RCQCHL-RVVQCSDLG--LEKVPKDLP-----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS   89 (330)
T ss_dssp             CCCCCT----TCEEET-TEEECTTSC--CCSCCCSCC-----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCCCC----CCcCCC-eEEEecCCC--ccccCccCC-----CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC
Confidence            345777    788864 457776532  444554432     389999999999999876 6888999999999999999


Q ss_pred             CCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCC--CCc
Q psy8879         132 NISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT--LSQ  209 (694)
Q Consensus       132 ~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~--i~~  209 (694)
                      .+.+..|.++. +|++|++++|.++.+|...+    ++|++|++++|.++.+++..|.++++|++|++++|.+..  +.+
T Consensus        90 ~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  164 (330)
T 1xku_A           90 KISPGAFAPLV-KLERLYLSKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN  164 (330)
T ss_dssp             CBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             eeCHHHhcCCC-CCCEEECCCCcCCccChhhc----ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence            99888887765 49999999999999987543    689999999999999999999999999999999999964  667


Q ss_pred             cccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCc
Q psy8879         210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD  289 (694)
Q Consensus       210 ~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~  289 (694)
                      ..|..+++|++|++++|+++. +|..+.  ++|++|++++|.+.+ +.+..+..+++|+.|++++|.++++++..+.+++
T Consensus       165 ~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  240 (330)
T 1xku_A          165 GAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP  240 (330)
T ss_dssp             TGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred             hhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence            789999999999999999985 444433  799999999999986 4478899999999999999999999888899999


Q ss_pred             ccceecccCCccccccchhhhcccccccccCCCCccccccccchhc------ccccCeeecCCCCCCC--cChhhhCCCC
Q psy8879         290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH------LSNLTTLDLSHNFLRA--LTQDLITPLK  361 (694)
Q Consensus       290 ~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~------l~~L~~L~Ls~N~L~~--l~~~~~~~l~  361 (694)
                      +|++|++++|+++.++. .+..+++|++|++++|+++++++..|..      ...|+.|++++|.+..  +++..|..+.
T Consensus       241 ~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~  319 (330)
T 1xku_A          241 HLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  319 (330)
T ss_dssp             TCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             CCCEEECCCCcCccCCh-hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence            99999999999998876 5788999999999999999998888754      3789999999999974  7788899999


Q ss_pred             CCCEEEccCCC
Q psy8879         362 SLQELRLDDND  372 (694)
Q Consensus       362 ~L~~L~Ls~N~  372 (694)
                      +++.++|++|+
T Consensus       320 ~l~~l~L~~N~  330 (330)
T 1xku_A          320 VRAAVQLGNYK  330 (330)
T ss_dssp             CGGGEEC----
T ss_pred             ceeEEEecccC
Confidence            99999999985

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=7.8e-30  Score=302.77  Aligned_cols=286  Identities=25%  Similarity=0.254  Sum_probs=230.6

Q ss_pred             CCeeEEEcCCCCCC-CCCcc-ccCCCCccEEEccCCCCCCCCcchhcCC--------------------------CCCcc
Q psy8879          95 ERVSLLDCTLSNVT-VLPGK-FLEGVTLHGLVISSGELKNISDGAFIGL--------------------------SSPLQ  146 (694)
Q Consensus        95 ~~L~~Ldls~n~l~-~lp~~-~~~~~~L~~L~Ls~n~i~~i~~~~F~~l--------------------------~~~L~  146 (694)
                      ..|+.|++++|.+. .+|.. +..+++|++|++++|.+....+..|..+                          ..+|+
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            36677777777765 56654 6666667777776666652222222222                          23477


Q ss_pred             EEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCC
Q psy8879         147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN  226 (694)
Q Consensus       147 ~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N  226 (694)
                      +|++++|.+++..+..+.++ ++|++|+|++|++++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus       398 ~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN  476 (768)
T ss_dssp             EEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             EEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence            77777777775556678888 89999999999998888888999999999999999999888888999999999999999


Q ss_pred             cccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc-cc
Q psy8879         227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV-LE  305 (694)
Q Consensus       227 ~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~-i~  305 (694)
                      ++++..|..+.++++|++|++++|++.+.+ |..+..+++|++|+|++|++++..|..+.++++|++|++++|++++ +|
T Consensus       477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             cccCcCCHHHhcCCCCCEEEccCCccCCcC-ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            999888999999999999999999998765 7888999999999999999998888889999999999999998873 22


Q ss_pred             ch---------------------------------------------------------------------hhhcccccc
Q psy8879         306 DH---------------------------------------------------------------------SFRALSTLS  316 (694)
Q Consensus       306 ~~---------------------------------------------------------------------~f~~l~~L~  316 (694)
                      ..                                                                     .|..+++|+
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~  635 (768)
T 3rgz_A          556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM  635 (768)
T ss_dssp             GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred             hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence            21                                                                     233457788


Q ss_pred             cccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc
Q psy8879         317 HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV  382 (694)
Q Consensus       317 ~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~  382 (694)
                      .|||++|++++..|..++++++|+.|+|++|++++..|..++.+++|+.|||++|++++..+..+.
T Consensus       636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence            999999999999999999999999999999999988888899999999999999999965554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=3.4e-29  Score=300.30  Aligned_cols=303  Identities=22%  Similarity=0.267  Sum_probs=230.8

Q ss_pred             CCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCC-CCCCCCcchhcCC
Q psy8879          64 CACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSG-ELKNISDGAFIGL  141 (694)
Q Consensus        64 C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n-~i~~i~~~~F~~l  141 (694)
                      |.|. ...+.|..  ..++.+|. +     +..++.||+++|.++.+ |..|..+++|++|++++| .+..+++.+|.++
T Consensus         2 C~~~-~~~~dcs~--~~L~~vP~-l-----p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L   72 (844)
T 3j0a_A            2 CSFD-GRIAFYRF--CNLTQVPQ-V-----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL   72 (844)
T ss_dssp             CBTT-TEEEEESC--CCSSCCCS-S-----CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC
T ss_pred             ceEe-ceEEEccC--CCCCCCCC-C-----CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCC
Confidence            5554 34566654  34666665 2     23899999999999876 677889999999999988 5567777888776


Q ss_pred             CCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCc--ccccCCCCccEEEecCCCCCCCCc-cccCCCCCC
Q psy8879         142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN--TSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTL  218 (694)
Q Consensus       142 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~--~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L  218 (694)
                      . +|++|+|++|.++.+++..|.++ ++|++|+|++|.+++..+  ..|.++++|++|+|++|.+.++.+ ..|.++++|
T Consensus        73 ~-~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           73 P-NLRILDLGSSKIYFLHPDAFQGL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             T-TCCEEECTTCCCCEECTTSSCSC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             C-CCCEEECCCCcCcccCHhHccCC-cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            5 49999999999999988889999 999999999999987433  348899999999999999988765 578999999


Q ss_pred             cEEeccCCcccchhhhhhccC--cccccccCCCCcCCCCCCCCCCCC---------------------------------
Q psy8879         219 RVLRLQGNRLTVSVVAALQGL--RSVTDLDLSHNLLAGPLGPSTVPR---------------------------------  263 (694)
Q Consensus       219 ~~L~Ls~N~l~~~~~~~~~~L--~~L~~L~Ls~N~l~~~i~p~~~~~---------------------------------  263 (694)
                      ++|++++|.+++..+..+..+  ++|+.|++++|.+.+.. +..+..                                 
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  229 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS  229 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc-ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence            999999999887766666554  44555554444443321 111111                                 


Q ss_pred             -----------------------------------ccccceeeccCCcccccccccccCCcccceecccCCccccccchh
Q psy8879         264 -----------------------------------LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS  308 (694)
Q Consensus       264 -----------------------------------l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~  308 (694)
                                                         .++|+.|++++|.+.++.+..|..+++|+.|+|++|+++.+++..
T Consensus       230 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  309 (844)
T 3j0a_A          230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA  309 (844)
T ss_dssp             SCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT
T ss_pred             cccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH
Confidence                                               146777777777777777777777788888888888888777777


Q ss_pred             hhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         309 FRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       309 f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      |.++++|+.|+|++|+++++.+..|.++++|+.|+|++|++..+++..|..+++|+.|++++|+++.++.
T Consensus       310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~  379 (844)
T 3j0a_A          310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF  379 (844)
T ss_dssp             TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred             hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence            8888888888888888888777778888888888888888888877777778888888888888876654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.4e-29  Score=294.40  Aligned_cols=232  Identities=21%  Similarity=0.323  Sum_probs=133.4

Q ss_pred             CccEEEccCCCCCC------------------CCccccc--cCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCC
Q psy8879         144 PLQALGLPNNLLSV------------------VPTSALA--PLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNK  203 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~------------------lp~~~~~--~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~  203 (694)
                      +|++|+|++|.+++                  +|. .+.  ++ ++|++|+|++|.+.+..+..|+++++|++|++++|+
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGC-TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCch-hhhhccc-CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            36666666666665                  444 244  55 566666666666555555556666666666666665


Q ss_pred             -CCC-CCccccCCC------CCCcEEeccCCcccchhhh--hhccCcccccccCCCCcCCCCCCCCCCCCccccceeecc
Q psy8879         204 -LMT-LSQDCLAPL------VTLRVLRLQGNRLTVSVVA--ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA  273 (694)
Q Consensus       204 -l~~-i~~~~f~~L------~~L~~L~Ls~N~l~~~~~~--~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls  273 (694)
                       +++ ..|..+..+      ++|++|++++|+++ .+|.  .+.++++|++|++++|.+.|.+ | .+..+++|++|+++
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i-p-~~~~l~~L~~L~L~  361 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL-P-AFGSEIKLASLNLA  361 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC-C-CCEEEEEESEEECC
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch-h-hhCCCCCCCEEECC
Confidence             554 334334443      56666666666666 4454  5666666666666666665444 3 55556666666666


Q ss_pred             CCcccccccccccCCcc-cceecccCCccccccchhhhccc--ccccccCCCCccccccccchh-------cccccCeee
Q psy8879         274 HNQFSSVRRGALAGLDK-LTSLSCHHNQIDVLEDHSFRALS--TLSHLDLAHNRIVAVSGASLA-------HLSNLTTLD  343 (694)
Q Consensus       274 ~N~L~~i~~~~~~~L~~-L~~L~Ls~N~L~~i~~~~f~~l~--~L~~L~Ls~N~L~~i~~~~f~-------~l~~L~~L~  343 (694)
                      +|.++.++. .+.++++ |++|++++|.++.++. .+..++  +|+.|++++|++++..|..|.       .+++|+.|+
T Consensus       362 ~N~l~~lp~-~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~  439 (636)
T 4eco_A          362 YNQITEIPA-NFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN  439 (636)
T ss_dssp             SSEEEECCT-TSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred             CCccccccH-hhhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence            666664433 3555555 6666666666665443 333322  566666666666665555555       455666666


Q ss_pred             cCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccccc
Q psy8879         344 LSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYV  382 (694)
Q Consensus       344 Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~  382 (694)
                      |++|++++++...+..+++|+.|+|++|+++.+|...|.
T Consensus       440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  478 (636)
T 4eco_A          440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK  478 (636)
T ss_dssp             CCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred             CcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence            666666666555555556666666666666655555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=9.6e-29  Score=279.45  Aligned_cols=143  Identities=25%  Similarity=0.323  Sum_probs=116.0

Q ss_pred             cEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEE
Q psy8879          71 TLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALG  149 (694)
Q Consensus        71 ~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~  149 (694)
                      .+.|..+  .++.+|..+.     ..++.|++++|.++.++ ..+..+++|++|++++|.++.+.+..|.++. +|++|+
T Consensus         4 ~l~ls~n--~l~~ip~~~~-----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~   75 (520)
T 2z7x_B            4 LVDRSKN--GLIHVPKDLS-----QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-ELEYLD   75 (520)
T ss_dssp             EEECTTS--CCSSCCCSCC-----TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-TCCEEE
T ss_pred             eEecCCC--Cccccccccc-----ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc-CCCEEe
Confidence            3555443  3445665543     58999999999998886 5788999999999999999999888888776 499999


Q ss_pred             ccCCCCCCCCccccccCCCCccEEEccCCCCCCCC-cccccCCCCccEEEecCCCCCCCCccccCCCCCC--cEEeccCC
Q psy8879         150 LPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTL--RVLRLQGN  226 (694)
Q Consensus       150 Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L--~~L~Ls~N  226 (694)
                      |++|.++.+|..   .+ ++|++|+|++|.+++++ +..|+++++|++|++++|.+++.   .|..+++|  ++|++++|
T Consensus        76 Ls~N~l~~lp~~---~l-~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B           76 LSHNKLVKISCH---PT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             CCSSCCCEEECC---CC-CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEEC
T ss_pred             cCCCceeecCcc---cc-CCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecc
Confidence            999999998875   66 89999999999999863 57899999999999999998762   35555666  77777777


Q ss_pred             cc
Q psy8879         227 RL  228 (694)
Q Consensus       227 ~l  228 (694)
                      .+
T Consensus       149 ~l  150 (520)
T 2z7x_B          149 ET  150 (520)
T ss_dssp             TT
T ss_pred             cc
Confidence            66

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.3e-28  Score=281.74  Aligned_cols=148  Identities=23%  Similarity=0.281  Sum_probs=124.6

Q ss_pred             eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879          97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS  176 (694)
Q Consensus        97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls  176 (694)
                      .+.+||++++++.+|..+.  ++|++|++++|.++.+++..|.++.. |++|+|++|.++++++..|.++ ++|++|+|+
T Consensus        33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls  108 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSE-LRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVS  108 (562)
T ss_dssp             CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTT-CCEEECCSCCCCEECTTTTTTC-TTCCEEECT
T ss_pred             CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCC-ccEEECCCCCCCcCCHHHhCCC-CCCCEEECC
Confidence            3789999999999998775  78999999999999999888988764 9999999999999998899999 999999999


Q ss_pred             CCCCCCCCcccccCCCCccEEEecCCCCCCCC-ccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC
Q psy8879         177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL  252 (694)
Q Consensus       177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l  252 (694)
                      +|+++.++..   .+++|++|++++|++++++ +..|.++++|++|++++|++++.....+..+ +|++|++++|.+
T Consensus       109 ~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l  181 (562)
T 3a79_B          109 HNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY  181 (562)
T ss_dssp             TSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred             CCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence            9999988865   7999999999999999876 4789999999999999999875322222222 225555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=6.3e-28  Score=258.35  Aligned_cols=264  Identities=26%  Similarity=0.342  Sum_probs=215.9

Q ss_pred             CCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879          94 DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL  173 (694)
Q Consensus        94 ~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L  173 (694)
                      ...|+.|++++|.++.++. +..+++|++|++++|.++.++  .|.++. +|++|++++|.++.+++  +..+ ++|++|
T Consensus        65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~--~~~~l~-~L~~L~l~~n~i~~~~~--~~~l-~~L~~L  137 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS--ALQNLT-NLRELYLNEDNISDISP--LANL-TKMYSL  137 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCT-TCSEEECTTSCCCCCGG--GTTC-TTCCEE
T ss_pred             cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch--HHcCCC-cCCEEECcCCcccCchh--hccC-CceeEE
Confidence            4478889999998888877 888888999999988888874  455544 59999999998888876  6777 889999


Q ss_pred             EccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879         174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA  253 (694)
Q Consensus       174 ~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~  253 (694)
                      ++++|......+ .+..+++|++|++++|.+..+.+  +..+++|++|++++|++.+..+  +..+++|+.|++++|.+.
T Consensus       138 ~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          138 NLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             ECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC
Confidence            998885444332 37888889999999888887765  7788889999999998876443  778888899999988887


Q ss_pred             CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccch
Q psy8879         254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL  333 (694)
Q Consensus       254 ~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f  333 (694)
                      +.. +  +..+++|++|++++|.++++++  +..+++|++|++++|.++.++  .+..+++|+.|++++|+++++  ..+
T Consensus       213 ~~~-~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~  283 (347)
T 4fmz_A          213 DIT-P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVL  283 (347)
T ss_dssp             CCG-G--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             CCc-h--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCC--hhh
Confidence            632 2  7788899999999999888765  788889999999999888874  578888999999999998887  347


Q ss_pred             hcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       334 ~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      ..+++|+.|++++|++++.++..+..+++|+.|++++|+++++++
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            888999999999999988888888889999999999999887765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=5.4e-29  Score=289.45  Aligned_cols=292  Identities=21%  Similarity=0.232  Sum_probs=249.4

Q ss_pred             hhhhhhhcCCCCCCCCeeEEEcCCCCCCC------------------CCcccc--CCCCccEEEccCCCCCCCCcchhcC
Q psy8879          81 LYAISESLRGLEPDERVSLLDCTLSNVTV------------------LPGKFL--EGVTLHGLVISSGELKNISDGAFIG  140 (694)
Q Consensus        81 l~~i~~~L~~l~~~~~L~~Ldls~n~l~~------------------lp~~~~--~~~~L~~L~Ls~n~i~~i~~~~F~~  140 (694)
                      +..+|..+..+   ..|+.|++++|.++.                  +|..+.  ++++|++|++++|.+....+..|.+
T Consensus       195 l~~ip~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          195 ITFVSKAVMRL---TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             EEEECGGGGGC---TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CccCCHHHhcc---cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            33456666554   489999999999988                  999998  9999999999999988766667766


Q ss_pred             CCCCccEEEccCCC-CCC--CCcccccc------CCCCccEEEccCCCCCCCCc-ccccCCCCccEEEecCCCCCCCCcc
Q psy8879         141 LSSPLQALGLPNNL-LSV--VPTSALAP------LAPNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYNKLMTLSQD  210 (694)
Q Consensus       141 l~~~L~~L~Ls~N~-L~~--lp~~~~~~------l~~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N~l~~i~~~  210 (694)
                      +. +|++|++++|+ +++  +|.. +..      + ++|++|++++|+++.++. ..|+++++|++|++++|++++..| 
T Consensus       272 l~-~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l-~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          272 LP-EMQLINVACNRGISGEQLKDD-WQALADAPVG-EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             CS-SCCEEECTTCTTSCHHHHHHH-HHHHHHSGGG-GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             CC-CCCEEECcCCCCCccccchHH-HHhhhccccC-CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            65 59999999998 885  5553 333      4 799999999999997764 379999999999999999994445 


Q ss_pred             ccCCCCCCcEEeccCCcccchhhhhhccCcc-cccccCCCCcCCCCCCCCCCCCcc--ccceeeccCCccccccccccc-
Q psy8879         211 CLAPLVTLRVLRLQGNRLTVSVVAALQGLRS-VTDLDLSHNLLAGPLGPSTVPRLS--SLKVLSIAHNQFSSVRRGALA-  286 (694)
Q Consensus       211 ~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~-L~~L~Ls~N~l~~~i~p~~~~~l~--~L~~L~Ls~N~L~~i~~~~~~-  286 (694)
                      .|..+++|++|++++|+++ .+|..+.++++ |++|++++|.+.+ + |..+..++  +|+.|++++|.+++..+..+. 
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  424 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-I-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP  424 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-C-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-c-chhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence            7899999999999999999 67888999999 9999999999984 5 66666654  899999999999998877777 


Q ss_pred             ------CCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhccc-------ccCeeecCCCCCCCcC
Q psy8879         287 ------GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS-------NLTTLDLSHNFLRALT  353 (694)
Q Consensus       287 ------~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~-------~L~~L~Ls~N~L~~l~  353 (694)
                            .+++|++|++++|.++.++...+..+++|+.|+|++|+++.++...+....       +|+.|+|++|+++.++
T Consensus       425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp  504 (636)
T 4eco_A          425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS  504 (636)
T ss_dssp             TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred             cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence                  778999999999999999988888899999999999999988777666543       9999999999999888


Q ss_pred             hhhh-CCCCCCCEEEccCCCCCCCCccccc
Q psy8879         354 QDLI-TPLKSLQELRLDDNDISMEPECIYV  382 (694)
Q Consensus       354 ~~~~-~~l~~L~~L~Ls~N~L~~l~~~~f~  382 (694)
                      ...+ ..+++|+.|+|++|+++++|..+..
T Consensus       505 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~  534 (636)
T 4eco_A          505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLN  534 (636)
T ss_dssp             GGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred             hhhhhccCCCcCEEECCCCCCCCcChhhhc
Confidence            7654 4899999999999999998876654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=6e-29  Score=263.94  Aligned_cols=247  Identities=21%  Similarity=0.199  Sum_probs=134.3

Q ss_pred             CeeEEEcCCCCCC---CCCccccCCCCccEEEccC-CCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCcc
Q psy8879          96 RVSLLDCTLSNVT---VLPGKFLEGVTLHGLVISS-GELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLD  171 (694)
Q Consensus        96 ~L~~Ldls~n~l~---~lp~~~~~~~~L~~L~Ls~-n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~  171 (694)
                      +++.|+++++++.   .+|..+..+++|++|++++ |.+....+..|..+. +|++|++++|.+++..+..|.++ ++|+
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-~~L~  128 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQI-KTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGC-TTCC
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCC-CCCC
Confidence            7888888888886   4677776666666666663 555544444444433 25555555555553333345555 5555


Q ss_pred             EEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCC-CCcEEeccCCcccchhhhhhccCcccccccCCCC
Q psy8879         172 RLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLV-TLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN  250 (694)
Q Consensus       172 ~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N  250 (694)
                      +|+|++|.+++..+..|.++++|++|++++|++++..|..+..++ +|++|++++|++++..|..+..+           
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-----------  197 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-----------  197 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----------
Confidence            555555555544444455555555555555555544444444444 45555555555554444444444           


Q ss_pred             cCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccc
Q psy8879         251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG  330 (694)
Q Consensus       251 ~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~  330 (694)
                                    + |++|++++|.+++..+..|.++++|++|++++|.++...+. +..+++|++|+|++|++++..|
T Consensus       198 --------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p  261 (313)
T 1ogq_A          198 --------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             --------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC
T ss_pred             --------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC
Confidence                          3 55555555555544444555555555555555555543332 4445555555565555555555


Q ss_pred             cchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCC
Q psy8879         331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND  372 (694)
Q Consensus       331 ~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~  372 (694)
                      ..|..+++|+.|+|++|++++..+.. ..+++|+.+++++|+
T Consensus       262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            55555566666666666655433332 445556666666655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=1.6e-28  Score=255.07  Aligned_cols=251  Identities=26%  Similarity=0.339  Sum_probs=193.4

Q ss_pred             EEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCC
Q psy8879         147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN  226 (694)
Q Consensus       147 ~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N  226 (694)
                      .++..+..+..+|.. +   +++|++|++++|.++.+++..|.++++|++|++++|+++++++..|..+++|++|++++|
T Consensus        11 ~~~c~~~~l~~ip~~-l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFYKIPDN-L---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCSSCCSS-S---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCccccCCC-C---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            344555556666653 2   245677777777777666666677777777777777777766666777777777777777


Q ss_pred             cccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccc-cccccCCcccceecccCCcccccc
Q psy8879         227 RLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVR-RGALAGLDKLTSLSCHHNQIDVLE  305 (694)
Q Consensus       227 ~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~-~~~~~~L~~L~~L~Ls~N~L~~i~  305 (694)
                      ++++..+..|.++++|++|++++|.+.+ +.+..+..+++|++|++++|.++++. +..+.++++|++|++++|+++.++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             ccCccChhhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            7776666677777777777777777765 33556778888888888888888754 667888889999999999998888


Q ss_pred             chhhhcccccc----cccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccc
Q psy8879         306 DHSFRALSTLS----HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIY  381 (694)
Q Consensus       306 ~~~f~~l~~L~----~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f  381 (694)
                      +..|..+++|+    .|++++|+++++++..+.. .+|+.|+|++|+++++++..+..+++|+.|++++|+|+       
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~-------  237 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD-------  237 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC-------
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc-------
Confidence            88888888887    8899999999998776654 48999999999999999998999999999999999999       


Q ss_pred             cCCCCCCcc-cccccccccccccCCccCccccCCc
Q psy8879         382 VGFNTMDLE-LIYSGVWRHSTLLIPVMLSLCTRSS  415 (694)
Q Consensus       382 ~~~NpCdC~-l~~~~~wl~~~~~~~~~~~~C~~~~  415 (694)
                           |+|. +.|+..|++...........|..+.
T Consensus       238 -----c~c~~l~~l~~~~~~~~~~~~~~~~C~~~~  267 (276)
T 2z62_A          238 -----CSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  267 (276)
T ss_dssp             -----CCTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred             -----ccCCchHHHHHHHHhcccccCCCceeeCCC
Confidence                 9996 7889999975554455567887653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=3.6e-28  Score=277.03  Aligned_cols=143  Identities=26%  Similarity=0.357  Sum_probs=125.3

Q ss_pred             hccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccc-cccchhhhcccc
Q psy8879         236 LQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID-VLEDHSFRALST  314 (694)
Q Consensus       236 ~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~-~i~~~~f~~l~~  314 (694)
                      +..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+.++++|++|++++|.++ ...+..|..+++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            4555666666666666665443467889999999999999999998889999999999999999997 344568999999


Q ss_pred             cccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       315 L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      |+.|++++|+++++.+..|..+++|+.|+|++|+++++++..+..+++|+.|++++|++++-.+
T Consensus       472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999987544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=1.6e-27  Score=255.21  Aligned_cols=260  Identities=24%  Similarity=0.331  Sum_probs=229.6

Q ss_pred             CCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879          94 DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL  173 (694)
Q Consensus        94 ~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L  173 (694)
                      ...|+.|++++|.++.++ .+..+++|++|++++|.+..++.  |..+ ++|++|++++|......+. +..+ ++|++|
T Consensus        87 l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~l~~n~~~~~~~~-~~~l-~~L~~L  160 (347)
T 4fmz_A           87 LVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP--LANL-TKMYSLNLGANHNLSDLSP-LSNM-TGLNYL  160 (347)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG--GTTC-TTCCEEECTTCTTCCCCGG-GTTC-TTCCEE
T ss_pred             CCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh--hccC-CceeEEECCCCCCcccccc-hhhC-CCCcEE
Confidence            458999999999999986 58899999999999999998865  5554 4599999999955444433 7888 999999


Q ss_pred             EccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879         174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA  253 (694)
Q Consensus       174 ~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~  253 (694)
                      ++++|.+..+++  +..+++|++|++++|.+.++.+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       161 ~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~  234 (347)
T 4fmz_A          161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT  234 (347)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             EecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC
Confidence            999999998875  8899999999999999998876  8889999999999999987655  888999999999999998


Q ss_pred             CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccch
Q psy8879         254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL  333 (694)
Q Consensus       254 ~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f  333 (694)
                      +. ++  +..+++|++|++++|.+++++  .+..+++|++|++++|+++.++  .+..+++|+.|++++|++++..+..+
T Consensus       235 ~~-~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l  307 (347)
T 4fmz_A          235 DL-SP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVI  307 (347)
T ss_dssp             CC-GG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred             CC-cc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHh
Confidence            63 23  889999999999999999873  5889999999999999999884  58899999999999999999999999


Q ss_pred             hcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879         334 AHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       334 ~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~  374 (694)
                      ..+++|+.|++++|+++++++  +..+++|+.|++++|+|+
T Consensus       308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999999999999999887  778999999999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.5e-28  Score=256.55  Aligned_cols=251  Identities=23%  Similarity=0.294  Sum_probs=186.5

Q ss_pred             eEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccC
Q psy8879          98 SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH  177 (694)
Q Consensus        98 ~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~  177 (694)
                      +.++|++++++.+|..+.  ++|++|++++|.++.++...|..+. +|++|++++|.++.+++..|.++ ++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTC-TTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCc-cCCCEEeCCC
Confidence            456777777777776553  5788888888888888777776654 48888888888888877778887 8888888888


Q ss_pred             CC-CCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCC
Q psy8879         178 NQ-LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL  256 (694)
Q Consensus       178 N~-L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i  256 (694)
                      |. ++.+.+..|.++++|++|++++|.++++.+..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+ +
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-V  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-E
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-c
Confidence            86 777777778888888888888888888877778888888888888888877666667777888888888887775 4


Q ss_pred             CCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879         257 GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL  336 (694)
Q Consensus       257 ~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l  336 (694)
                      ++..+..+++|+.|++++|.++++.+..|.++++|++|++++|.++.+++..|..+++|+.|++++|++....+.. +..
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~  247 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLW  247 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHH
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHH
Confidence            4556777788888888888888777777777788888888888888777777777788888888888776542211 112


Q ss_pred             cccCeeecCCCCCCCcCh
Q psy8879         337 SNLTTLDLSHNFLRALTQ  354 (694)
Q Consensus       337 ~~L~~L~Ls~N~L~~l~~  354 (694)
                      ..++.+..+.+.+....|
T Consensus       248 ~~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          248 AWLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             HHHHHCCSEECCCBEEES
T ss_pred             HHHHhcccccCccccCCc
Confidence            334444555565554333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=3e-28  Score=265.65  Aligned_cols=253  Identities=21%  Similarity=0.241  Sum_probs=222.3

Q ss_pred             CCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCcc
Q psy8879         116 EGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN  195 (694)
Q Consensus       116 ~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~  195 (694)
                      .+.+++.|+++++.++.++...|.++.. |++|++++|.++.+++..|..+ ++|++|+|++|.++.+++..|.++++|+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchhhCChhHhccccc-CcEEECCCCcccccChhhccCC-CCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            4578999999999999999988877765 9999999999999999889999 9999999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccc---------
Q psy8879         196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSS---------  266 (694)
Q Consensus       196 ~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~---------  266 (694)
                      +|++++|+++.+++..|..+++|++|++++|++++..+..+.++++|++|++++|.+.+ ++   +..+++         
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSEEECCSS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccceeecccc
Confidence            99999999999999889999999999999999998888899999999999999999985 22   333444         


Q ss_pred             ----------cceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879         267 ----------LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL  336 (694)
Q Consensus       267 ----------L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l  336 (694)
                                |++|++++|.+..++..   ..++|++|++++|.++..+  .+..+++|+.|++++|.++++.+..|..+
T Consensus       197 ~l~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          197 LLSTLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             CCSEEECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             cccccCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHcccc
Confidence                      55555555555555332   2468999999999998763  68899999999999999999999999999


Q ss_pred             cccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccc
Q psy8879         337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI  380 (694)
Q Consensus       337 ~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~  380 (694)
                      ++|+.|+|++|++++++.. +..+++|+.|++++|+++.+|..+
T Consensus       272 ~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~  314 (390)
T 3o6n_A          272 QRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQ  314 (390)
T ss_dssp             SSCCEEECCSSCCCEEECS-SSCCTTCCEEECCSSCCCCCGGGH
T ss_pred             ccCCEEECCCCcCcccCcc-cCCCCCCCEEECCCCcceecCccc
Confidence            9999999999999998654 567999999999999999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.95  E-value=3.3e-29  Score=271.32  Aligned_cols=290  Identities=21%  Similarity=0.222  Sum_probs=182.2

Q ss_pred             cEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccC-CCCCCcEEeccCCcccchhhhhhccCcccccccCCC
Q psy8879         171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLA-PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSH  249 (694)
Q Consensus       171 ~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~-~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~  249 (694)
                      +.++++++.++.++....   +.++.|+|++|+|+++++..|. .+++|++|+|++|++++..                 
T Consensus        21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-----------------   80 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-----------------   80 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-----------------
T ss_pred             CEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-----------------
Confidence            456666666666553211   2355666666666665555554 5555555555555555433                 


Q ss_pred             CcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcccccc
Q psy8879         250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS  329 (694)
Q Consensus       250 N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~  329 (694)
                              +..|..+++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|.++++|+.|+|++|+|++++
T Consensus        81 --------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           81 --------SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             --------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             --------hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence                    444555566666666666666666666666666777777777776666666777777777777777777776


Q ss_pred             ccch---hcccccCeeecCCCCCCCcChhhhCCCCC--CCEEEccCCCCCCCCcccccCCCCCCcccccc-cccccccc-
Q psy8879         330 GASL---AHLSNLTTLDLSHNFLRALTQDLITPLKS--LQELRLDDNDISMEPECIYVGFNTMDLELIYS-GVWRHSTL-  402 (694)
Q Consensus       330 ~~~f---~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~--L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~-~~wl~~~~-  402 (694)
                      +..|   ..+++|+.|+|++|+|+.++...+..++.  ++.|+|++|+|.            |||++.|+ ..|+.... 
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~------------C~C~l~~~~~~~~~~~~~  220 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE------------CDCKLYQLFSHWQYRQLS  220 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE------------CCHHHHHHHHHHHHTTCH
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc------------CCcCcHHHHHHHHHhcCC
Confidence            6665   56788889999999998888877777776  488999999999            99999875 67875322 


Q ss_pred             --cCCccCccccCCcccceeeE-----EEE-EeecCccccceeeeeceeE------EEEeccCccccccceeEeeeeEEe
Q psy8879         403 --LIPVMLSLCTRSSVVTRYRY-----CVV-LIEGSNILDQSALVLGCSE------ILALVPTLTSQPLSYVTSLRANVT  468 (694)
Q Consensus       403 --~~~~~~~~C~~~~~~~~~~~-----~~v-~~~~~~~~~~~~~~l~c~~------i~~l~~~~~~~~~~~i~~~~~n~~  468 (694)
                        ......+.|..|....+...     |.. ........++..+.+.|.+      +.|..+++.... ......++.+ 
T Consensus       221 ~~~~~~~~~~C~~p~~~~~~~~~~~~~C~~~~~~~v~v~~G~~~~l~C~~~gp~p~i~W~~~~~~~~~-~~~~~~r~~~-  298 (361)
T 2xot_A          221 SVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVL-SQGSNGSVSV-  298 (361)
T ss_dssp             HHHTTGGGCEEESSSCCEEGGGCCCTTCCSCCCCCCEEETTCCEEECCCCSSTTCEEEEECTTSCBCC-SCCSSSSEEE-
T ss_pred             chhccCcCCEeCCChHHcCccccccccCCCccccCceecCCCeEEEEeEeeCCCCeEEEEeCCCeeEe-ecccCCceEe-
Confidence              11134677876543211100     000 0001123344455666755      777776665441 1122234555 


Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .+|+| |.+|+.+|+|.|+|+|+|..+.+...+..
T Consensus       299 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l  333 (361)
T 2xot_A          299 RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVEL  333 (361)
T ss_dssp             ETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEE
T ss_pred             ecCeEEEeecCcccCEEEEEEEecCCCccEEEEEE
Confidence            67888 99999999999999999996665554433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=1.3e-27  Score=274.66  Aligned_cols=280  Identities=27%  Similarity=0.371  Sum_probs=233.0

Q ss_pred             CCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccE
Q psy8879          94 DERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR  172 (694)
Q Consensus        94 ~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~  172 (694)
                      ...|+.||+++|+|+.+++ .|..+++|++|+|++|+|+.++.+.|.++.. |++|+|++|+++.+++..|.++ ++|++
T Consensus        75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~-L~~L~Ls~N~l~~l~~~~~~~L-~~L~~  152 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHL-KTLKE  152 (635)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT-CCEEECTTSCCCCSTTCCCTTC-TTCCE
T ss_pred             CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC-CCEEECCCCcCCCCChhhhhcC-cccCe
Confidence            3489999999999999866 5788999999999999999999999988765 9999999999999999889999 99999


Q ss_pred             EEccCCCCCCCC-cccccCCCCccEEEecCCCCCCCCccccC--------------------------------------
Q psy8879         173 LDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLA--------------------------------------  213 (694)
Q Consensus       173 L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~--------------------------------------  213 (694)
                      |+|++|.++.+. +..++++++|++|++++|+++++.+..|.                                      
T Consensus       153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~  232 (635)
T 4g8a_A          153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR  232 (635)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred             eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhh
Confidence            999999998764 46778899999999999877654322110                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy8879         214 --------------------------------------------------------------------------------  213 (694)
Q Consensus       214 --------------------------------------------------------------------------------  213 (694)
                                                                                                      
T Consensus       233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~  312 (635)
T 4g8a_A          233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS  312 (635)
T ss_dssp             SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred             cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------CCCCCcEEeccCCcccch------
Q psy8879         214 --------------------------------------------------------PLVTLRVLRLQGNRLTVS------  231 (694)
Q Consensus       214 --------------------------------------------------------~L~~L~~L~Ls~N~l~~~------  231 (694)
                                                                              .+++|+.|++++|.+...      
T Consensus       313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~  392 (635)
T 4g8a_A          313 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS  392 (635)
T ss_dssp             EESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred             ccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc
Confidence                                                                    123344444444443210      


Q ss_pred             --------------------------------------------hhhhhccCcccccccCCCCcCCCCCCCCCCCCcccc
Q psy8879         232 --------------------------------------------VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL  267 (694)
Q Consensus       232 --------------------------------------------~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L  267 (694)
                                                                  ....|..+.+++.++++.|.+.+ +.+..+..+++|
T Consensus       393 ~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~-~~~~~~~~~~~L  471 (635)
T 4g8a_A          393 DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSL  471 (635)
T ss_dssp             HHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTC
T ss_pred             hhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc-ccccccccchhh
Confidence                                                        01123445566677777787775 447788899999


Q ss_pred             ceeeccCCcc-cccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCC
Q psy8879         268 KVLSIAHNQF-SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH  346 (694)
Q Consensus       268 ~~L~Ls~N~L-~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~  346 (694)
                      +.|++++|.+ ..+.+..|..+++|++|+|++|+|+.+++..|.++++|+.|+|++|+|+++++..|.++++|+.|+|++
T Consensus       472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  551 (635)
T 4g8a_A          472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  551 (635)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred             hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence            9999999974 456778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcChhhhCCC-CCCCEEEccCCCCCCC
Q psy8879         347 NFLRALTQDLITPL-KSLQELRLDDNDISME  376 (694)
Q Consensus       347 N~L~~l~~~~~~~l-~~L~~L~Ls~N~L~~l  376 (694)
                      |+|+++++..+..+ ++|+.|+|++|+|..-
T Consensus       552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             SCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            99999999999888 6899999999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=4.1e-29  Score=265.27  Aligned_cols=228  Identities=22%  Similarity=0.285  Sum_probs=186.7

Q ss_pred             ccEEEccCCCCCC--CCccccccCCCCccEEEccC-CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEE
Q psy8879         145 LQALGLPNNLLSV--VPTSALAPLAPNLDRLDLSH-NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL  221 (694)
Q Consensus       145 L~~L~Ls~N~L~~--lp~~~~~~l~~~L~~L~Ls~-N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L  221 (694)
                      ++.|+|++|.+++  ..+..+.++ ++|++|+|++ |.+.+..+..|.++++|++|++++|++++..+..|..+++|++|
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            5555555555554  223356666 7778888874 77776666677778888888888888776667777778888888


Q ss_pred             eccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCcc-ccceeeccCCcccccccccccCCcccceecccCCc
Q psy8879         222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS-SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ  300 (694)
Q Consensus       222 ~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~-~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~  300 (694)
                      ++++|++++..|..+..+++|++|++++|.+.+.+ |..+..++ +|++|++++|.+++..+..+..++ |++|++++|.
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC-CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            88888888777778888888888888888887655 66677777 899999999999987788888887 9999999999


Q ss_pred             cccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879         301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME  376 (694)
Q Consensus       301 L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l  376 (694)
                      ++...+..|..+++|+.|+|++|++++..+. +..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            9999999999999999999999999987666 78899999999999999987778899999999999999999843

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=2.4e-28  Score=277.70  Aligned_cols=199  Identities=22%  Similarity=0.282  Sum_probs=165.3

Q ss_pred             EEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCC
Q psy8879         100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ  179 (694)
Q Consensus       100 Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~  179 (694)
                      .|++.++++.+|..+.  ++|++|++++|.++.+.+..|.++. +|++|++++|.++.+++.+|.++ ++|++|+|++|.
T Consensus        10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~   85 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNH   85 (549)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSC
T ss_pred             EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCC-cccEEECCCCCcCccChhhcccc-ccCCEEECCCCc
Confidence            7899999999999775  6899999999999999888887765 59999999999999999899999 999999999999


Q ss_pred             CCCCCcccccCCCCccEEEecCCCCCCCC-ccccCCCCCCcEEeccCCc-ccchhhhhhccCcccccccCCCCcCCCCCC
Q psy8879         180 LYKLENTSFKGLSSLNFLDLSYNKLMTLS-QDCLAPLVTLRVLRLQGNR-LTVSVVAALQGLRSVTDLDLSHNLLAGPLG  257 (694)
Q Consensus       180 L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~-~~~f~~L~~L~~L~Ls~N~-l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~  257 (694)
                      ++++++..|+++++|++|++++|.++++. +..|..+++|++|++++|+ +....+..|.++++|++|++++|.+.+.. 
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-  164 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-  164 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-
Confidence            99999988999999999999999999753 4679999999999999998 44444578999999999999999998744 


Q ss_pred             CCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879         258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV  303 (694)
Q Consensus       258 p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~  303 (694)
                      +..+..+++|+.|++++|.+..++...+..+++|++|++++|+++.
T Consensus       165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             hhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence            7777777777666666666655544333445555555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.9e-27  Score=264.34  Aligned_cols=261  Identities=29%  Similarity=0.419  Sum_probs=151.3

Q ss_pred             CCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879          94 DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL  173 (694)
Q Consensus        94 ~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L  173 (694)
                      ...|+.|++++|.++.+++ +..+++|++|++++|.+..+++  |..+ ++|++|++++|.++++++  +.++ ++|++|
T Consensus        67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNL-TNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG--GTTC-TTCSEE
T ss_pred             hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCC-CCCCEEECCCCCCCCChH--HcCC-CCCCEE
Confidence            3477888888888877776 7777788888888888877765  4444 348888888888877765  6677 778888


Q ss_pred             EccCCCCCCCCc-------------------ccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhh
Q psy8879         174 DLSHNQLYKLEN-------------------TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA  234 (694)
Q Consensus       174 ~Ls~N~L~~i~~-------------------~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~  234 (694)
                      ++++|.++.++.                   ..+.++++|++|++++|.+..+..  +..+++|++|++++|.+.+..+ 
T Consensus       140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-  216 (466)
T 1o6v_A          140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP-  216 (466)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG-
T ss_pred             ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCccccccc-
Confidence            888777766542                   113444455555555555554422  4455555555555555554333 


Q ss_pred             hhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccc
Q psy8879         235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST  314 (694)
Q Consensus       235 ~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~  314 (694)
                       +..+++|++|++++|.+.+ +  ..+..+++|+.|++++|.++++++  +.++++|++|++++|.++.+++  +..+++
T Consensus       217 -~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~  288 (466)
T 1o6v_A          217 -LGILTNLDELSLNGNQLKD-I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA  288 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             -ccccCCCCEEECCCCCccc-c--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCc
Confidence             4444555555555555543 1  234445555555555555555443  4455555555555555555443  445555


Q ss_pred             cccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879         315 LSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME  376 (694)
Q Consensus       315 L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l  376 (694)
                      |+.|++++|+++++.+  +..+++|+.|+|++|+++++++  +..+++|+.|++++|+++++
T Consensus       289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            5555555555555433  4455555555555555555443  34455555555555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=265.58  Aligned_cols=273  Identities=22%  Similarity=0.292  Sum_probs=231.6

Q ss_pred             EccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccC
Q psy8879          74 CTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPN  152 (694)
Q Consensus        74 C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~  152 (694)
                      |......++.+|..+.     ..++.|++++|+++.++. .+..+++|++|++++|.++.+.+..|.++. +|++|++++
T Consensus        36 c~~~~~~l~~iP~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~  109 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT-----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSY  109 (353)
T ss_dssp             EECCSTTCSSCCTTCC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCS
T ss_pred             eeCCCCCccccccccc-----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCC
Confidence            3334455666776553     389999999999999877 688899999999999999999888888765 499999999


Q ss_pred             CCCCCCCccccccCCCCccEEEccCCCCCCCCc-ccccCCCCccEEEecCC-CCCCCCccccCCCCCCcEEeccCCcccc
Q psy8879         153 NLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYN-KLMTLSQDCLAPLVTLRVLRLQGNRLTV  230 (694)
Q Consensus       153 N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N-~l~~i~~~~f~~L~~L~~L~Ls~N~l~~  230 (694)
                      |.++.+++..|.++ ++|++|++++|+++.++. ..|.++++|++|++++| .+..+.+..|..+++|++|++++|++++
T Consensus       110 n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          110 NYLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SCCSSCCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CcCCcCCHhHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            99999999889999 999999999999999987 68999999999999999 5888888889999999999999999999


Q ss_pred             hhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCccccccccccc---CCcccceecccCCccccc---
Q psy8879         231 SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA---GLDKLTSLSCHHNQIDVL---  304 (694)
Q Consensus       231 ~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~---~L~~L~~L~Ls~N~L~~i---  304 (694)
                      ..+..+..+++|++|++++|.+.. ++...+..+++|+.|++++|.+++++...+.   ....++.++++++.++..   
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             cCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence            889999999999999999999874 4344455689999999999999987655433   345667777777766532   


Q ss_pred             -cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcCh
Q psy8879         305 -EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ  354 (694)
Q Consensus       305 -~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~  354 (694)
                       .+..+..+++|+.|++++|+++.++...|..+++|+.|+|++|.+....+
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             23467889999999999999999988878999999999999999987654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=5.6e-28  Score=278.17  Aligned_cols=274  Identities=26%  Similarity=0.264  Sum_probs=244.1

Q ss_pred             CCCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccE
Q psy8879          93 PDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR  172 (694)
Q Consensus        93 ~~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~  172 (694)
                      ....|+.++++++.+..+| .+..+++|++|++++|.+..++  .+ . .++|++|++++|......  .+..+ ++|++
T Consensus       283 ~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp--~~-~-l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~  354 (606)
T 3vq2_A          283 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP--TL-D-LPFLKSLTLTMNKGSISF--KKVAL-PSLSY  354 (606)
T ss_dssp             GGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC--CC-C-CSSCCEEEEESCSSCEEC--CCCCC-TTCCE
T ss_pred             cCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc--cC-C-CCccceeeccCCcCccch--hhccC-CCCCE
Confidence            3458999999999999998 7888999999999999998887  34 4 456999999999543322  46677 99999


Q ss_pred             EEccCCCCCCCC--cccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhh-hhhccCcccccccCCC
Q psy8879         173 LDLSHNQLYKLE--NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV-AALQGLRSVTDLDLSH  249 (694)
Q Consensus       173 L~Ls~N~L~~i~--~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~~L~Ls~  249 (694)
                      |++++|.++++.  +..+.++++|++|++++|.+.+++ ..|..+++|++|++++|++.+..+ ..+.++++|++|++++
T Consensus       355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  433 (606)
T 3vq2_A          355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY  433 (606)
T ss_dssp             EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred             EECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence            999999998874  567899999999999999999876 668999999999999999998877 6899999999999999


Q ss_pred             CcCCCCCCCCCCCCccccceeeccCCcccc-cccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccc
Q psy8879         250 NLLAGPLGPSTVPRLSSLKVLSIAHNQFSS-VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV  328 (694)
Q Consensus       250 N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~-i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i  328 (694)
                      |.+.+.. +..+..+++|++|++++|.+++ +.+..+.++++|++|++++|+++.+++..|.++++|+.|+|++|+++++
T Consensus       434 n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  512 (606)
T 3vq2_A          434 TNTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL  512 (606)
T ss_dssp             SCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred             CCCCccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc
Confidence            9998744 7889999999999999999998 5677899999999999999999999999999999999999999999999


Q ss_pred             cccchhcccccCeeecCCCCCCCcChhhhCCCC-CCCEEEccCCCCCCCC
Q psy8879         329 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLK-SLQELRLDDNDISMEP  377 (694)
Q Consensus       329 ~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~-~L~~L~Ls~N~L~~l~  377 (694)
                      .|..|.++++|+.|+|++|+++.++.. +..++ +|+.|++++|+|....
T Consensus       513 ~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          513 DSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             EGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSS
T ss_pred             CHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCC
Confidence            999999999999999999999998877 77776 6999999999998643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=9.1e-28  Score=286.71  Aligned_cols=289  Identities=21%  Similarity=0.241  Sum_probs=240.4

Q ss_pred             hhhhcCCCCCCCCeeEEEcCCCCCCC------------------CCcccc--CCCCccEEEccCCCCCCCCcchhcCCCC
Q psy8879          84 ISESLRGLEPDERVSLLDCTLSNVTV------------------LPGKFL--EGVTLHGLVISSGELKNISDGAFIGLSS  143 (694)
Q Consensus        84 i~~~L~~l~~~~~L~~Ldls~n~l~~------------------lp~~~~--~~~~L~~L~Ls~n~i~~i~~~~F~~l~~  143 (694)
                      +|..+..+.   .|+.|++++|.++.                  +|..+.  .+++|++|++++|.+....+..|.++. 
T Consensus       440 IP~~l~~L~---~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-  515 (876)
T 4ecn_A          440 ISKAIQRLT---KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-  515 (876)
T ss_dssp             ECGGGGGCT---TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS-
T ss_pred             hhHHHhcCC---CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC-
Confidence            566655544   89999999999988                  999987  999999999999987766667777765 


Q ss_pred             CccEEEccCCC-CCC--CCcc------ccccCCCCccEEEccCCCCCCCCc-ccccCCCCccEEEecCCCCCCCCccccC
Q psy8879         144 PLQALGLPNNL-LSV--VPTS------ALAPLAPNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYNKLMTLSQDCLA  213 (694)
Q Consensus       144 ~L~~L~Ls~N~-L~~--lp~~------~~~~l~~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N~l~~i~~~~f~  213 (694)
                      +|++|+|++|+ +++  +|..      .+..+ ++|++|+|++|.++.++. ..|.++++|++|+|++|+++.++  .|.
T Consensus       516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~  592 (876)
T 4ecn_A          516 ELQSLNIACNRGISAAQLKADWTRLADDEDTG-PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFG  592 (876)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT-TTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCC
T ss_pred             CCCEEECcCCCCcccccchHHHHhhhhccccc-CCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhc
Confidence            59999999998 886  5542      22334 599999999999997764 37999999999999999999665  699


Q ss_pred             CCCCCcEEeccCCcccchhhhhhccCcc-cccccCCCCcCCCCCCCCCCCCcc--ccceeeccCCccccccccc---cc-
Q psy8879         214 PLVTLRVLRLQGNRLTVSVVAALQGLRS-VTDLDLSHNLLAGPLGPSTVPRLS--SLKVLSIAHNQFSSVRRGA---LA-  286 (694)
Q Consensus       214 ~L~~L~~L~Ls~N~l~~~~~~~~~~L~~-L~~L~Ls~N~l~~~i~p~~~~~l~--~L~~L~Ls~N~L~~i~~~~---~~-  286 (694)
                      .+++|++|++++|++. .+|..+.++++ |+.|++++|.+.. + |..+..++  +|+.|+|++|.+.+..+..   +. 
T Consensus       593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-I-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-C-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-C-chhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            9999999999999999 78888999998 9999999999984 5 66676664  4999999999998765432   12 


Q ss_pred             -CCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc-------cccCeeecCCCCCCCcChhhh-
Q psy8879         287 -GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL-------SNLTTLDLSHNFLRALTQDLI-  357 (694)
Q Consensus       287 -~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l-------~~L~~L~Ls~N~L~~l~~~~~-  357 (694)
                       .+++|+.|+|++|.++.++...+..+++|+.|+|++|+++.++...+...       ++|+.|+|++|+++.++.... 
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~  749 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA  749 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence             34589999999999999998888889999999999999998877665533       499999999999998886644 


Q ss_pred             CCCCCCCEEEccCCCCCCCCccccc
Q psy8879         358 TPLKSLQELRLDDNDISMEPECIYV  382 (694)
Q Consensus       358 ~~l~~L~~L~Ls~N~L~~l~~~~f~  382 (694)
                      ..+++|+.|+|++|+++++|..++.
T Consensus       750 ~~l~~L~~L~Ls~N~L~~lp~~l~~  774 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSSFPTQPLN  774 (876)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred             ccCCCcCEEEeCCCCCCccchhhhc
Confidence            4899999999999999998876653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=2.4e-27  Score=273.44  Aligned_cols=253  Identities=21%  Similarity=0.248  Sum_probs=221.5

Q ss_pred             CCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCcc
Q psy8879         116 EGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLN  195 (694)
Q Consensus       116 ~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~  195 (694)
                      .+.+++.|++++|.+..++...|.++.. |++|+|++|.++.+++..|..+ ++|++|+|++|.++++++..|+++++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCC-CcEEECCCCCCCCCChHHhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            3568899999999999999988877765 9999999999999999889999 9999999999999999999999999999


Q ss_pred             EEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCcccc--------
Q psy8879         196 FLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL--------  267 (694)
Q Consensus       196 ~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L--------  267 (694)
                      +|+|++|.++.+++..|..+++|++|++++|.+++..+..|.++++|++|++++|.+.+ ++   +..+++|        
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSS
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccC
Confidence            99999999999999989999999999999999999999999999999999999999986 32   3334444        


Q ss_pred             -----------ceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879         268 -----------KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL  336 (694)
Q Consensus       268 -----------~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l  336 (694)
                                 +.|++++|.+..++...   .++|+.|+|++|.++..  ..+..+++|+.|+|++|.++++.+..|..+
T Consensus       203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          203 LLSTLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             CCSEEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ccccccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence                       44555555555444322   25789999999999875  468899999999999999999999999999


Q ss_pred             cccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccc
Q psy8879         337 SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI  380 (694)
Q Consensus       337 ~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~  380 (694)
                      ++|+.|+|++|.+++++.. +..+++|+.|+|++|+++.+|..+
T Consensus       278 ~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~i~~~~  320 (597)
T 3oja_B          278 QRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQ  320 (597)
T ss_dssp             SSCCEEECTTSCCCEEECS-SSCCTTCCEEECCSSCCCCCGGGH
T ss_pred             cCCCEEECCCCCCCCCCcc-cccCCCCcEEECCCCCCCccCccc
Confidence            9999999999999998654 567999999999999999998765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.3e-26  Score=276.73  Aligned_cols=273  Identities=19%  Similarity=0.255  Sum_probs=156.1

Q ss_pred             CeeEEEcCCCCCCCCCc--cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCC-ccE
Q psy8879          96 RVSLLDCTLSNVTVLPG--KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPN-LDR  172 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~--~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~-L~~  172 (694)
                      .|+.|++++|.++.+|.  .+..+++|+.|++++|.+..++  .|..+ ++|+.|+|++|.++.+|.. +.++ ++ |++
T Consensus       549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L-~~L~~L~Ls~N~l~~lp~~-l~~l-~~~L~~  623 (876)
T 4ecn_A          549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTN-VKLTDLKLDYNQIEEIPED-FCAF-TDQVEG  623 (876)
T ss_dssp             TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTT-SEESEEECCSSCCSCCCTT-SCEE-CTTCCE
T ss_pred             CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCC-CcceEEECcCCccccchHH-Hhhc-cccCCE
Confidence            55666666666666665  5556666666666666666554  33333 3366666666666655543 4445 45 666


Q ss_pred             EEccCCCCCCCCcccccCCCC--ccEEEecCCCCCCCCcccc---C--CCCCCcEEeccCCcccchhhhhhccCcccccc
Q psy8879         173 LDLSHNQLYKLENTSFKGLSS--LNFLDLSYNKLMTLSQDCL---A--PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL  245 (694)
Q Consensus       173 L~Ls~N~L~~i~~~~f~~L~~--L~~L~Ls~N~l~~i~~~~f---~--~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L  245 (694)
                      |+|++|.++.++ ..+..++.  |+.|++++|++.+..+...   .  .+++|++|++++|+++...+..+..+++|+.|
T Consensus       624 L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          624 LGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI  702 (876)
T ss_dssp             EECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred             EECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence            666666665444 34444332  6666666666655433211   1  23356666666666664333344456666666


Q ss_pred             cCCCCcCCCCCCCCCCCC-------ccccceeeccCCccccccccccc--CCcccceecccCCccccccchhhhcccccc
Q psy8879         246 DLSHNLLAGPLGPSTVPR-------LSSLKVLSIAHNQFSSVRRGALA--GLDKLTSLSCHHNQIDVLEDHSFRALSTLS  316 (694)
Q Consensus       246 ~Ls~N~l~~~i~p~~~~~-------l~~L~~L~Ls~N~L~~i~~~~~~--~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~  316 (694)
                      +|++|.+.. +++..+..       +++|+.|+|++|+++.++.. +.  .+++|+.|+|++|+++.++. .+..+++|+
T Consensus       703 ~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~  779 (876)
T 4ecn_A          703 ILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLK  779 (876)
T ss_dssp             ECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSSCCSSCCC-GGGGCTTCC
T ss_pred             ECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCccchHH-hhhccCCCcCEEEeCCCCCCccch-hhhcCCCCC
Confidence            666666662 43333322       23666666766666655433 33  66666667777666666533 455666666


Q ss_pred             cccCCC------CccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccc
Q psy8879         317 HLDLAH------NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI  380 (694)
Q Consensus       317 ~L~Ls~------N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~  380 (694)
                      .|+|++      |++.+..|..|.++++|+.|+|++|++..+|....   ++|+.|+|++|++..++...
T Consensus       780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~  846 (876)
T 4ecn_A          780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTS  846 (876)
T ss_dssp             EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---SSSCEEECCSCTTCEEECGG
T ss_pred             EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc---CCCCEEECCCCCCCccChHH
Confidence            666654      55666666666666667777777776655555422   46666777777666555433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.4e-26  Score=256.90  Aligned_cols=262  Identities=27%  Similarity=0.392  Sum_probs=214.0

Q ss_pred             CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCc--------------
Q psy8879          95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPT--------------  160 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~--------------  160 (694)
                      ..|+.|++++|.+..++. +..+++|++|++++|.++.++.  |..+ ++|++|++++|.++.++.              
T Consensus        90 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  165 (466)
T 1o6v_A           90 TKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNL-TNLNRLELSSNTISDISALSGLTSLQQLSFGN  165 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTC-TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred             ccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH--HcCC-CCCCEEECCCCccCCChhhccCCcccEeecCC
Confidence            477888888888877766 7777788888888887777754  4443 347777777777665542              


Q ss_pred             -----cccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhh
Q psy8879         161 -----SALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAA  235 (694)
Q Consensus       161 -----~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~  235 (694)
                           ..+.++ ++|++|++++|.++.++  .+..+++|++|++++|.+.++.+  +..+++|++|++++|++++.  ..
T Consensus       166 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  238 (466)
T 1o6v_A          166 QVTDLKPLANL-TTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GT  238 (466)
T ss_dssp             SCCCCGGGTTC-TTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             cccCchhhccC-CCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hh
Confidence                 125566 78999999999988875  47889999999999999988876  67789999999999998864  46


Q ss_pred             hccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccc
Q psy8879         236 LQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL  315 (694)
Q Consensus       236 ~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L  315 (694)
                      +..+++|++|++++|.+.+.. +  +..+++|++|++++|.++++++  +.++++|++|++++|+++.+++  +..+++|
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLA-P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG-G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             hhcCCCCCEEECCCCccccch-h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence            788899999999999998642 2  7888999999999999998865  7888999999999999988775  7888999


Q ss_pred             ccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       316 ~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      +.|++++|+++++.+  +..+++|+.|++++|++++++  .+..+++|+.|++++|+++++++
T Consensus       312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CEEECcCCcCCCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch
Confidence            999999999998876  678899999999999998874  47889999999999999987765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=1.1e-26  Score=240.96  Aligned_cols=229  Identities=27%  Similarity=0.402  Sum_probs=171.0

Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL  223 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L  223 (694)
                      +++.++++++.++.+|...    +++|++|+|++|+++.+++..|.++++|++|++++|.++.+++..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            3667777777777776532    156777777777777776666777777777777777776666666666666666666


Q ss_pred             cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879         224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV  303 (694)
Q Consensus       224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~  303 (694)
                      ++|+++...                         +..+..+++|++|++++|.++.+++..|.++++|++|+|++|.++.
T Consensus        93 ~~n~l~~~~-------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  147 (270)
T 2o6q_A           93 TDNKLQALP-------------------------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS  147 (270)
T ss_dssp             CSSCCCCCC-------------------------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCcCCcCC-------------------------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence            666554332                         4445556666777777777777766667777788888888888887


Q ss_pred             ccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879         304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG  383 (694)
Q Consensus       304 i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~  383 (694)
                      +++..|..+++|+.|+|++|+++++++..|.++++|+.|+|++|+++++++..+..+++|+.|++++|+|.         
T Consensus       148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------  218 (270)
T 2o6q_A          148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD---------  218 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC---------
T ss_pred             cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee---------
Confidence            77777888888888888888888888888889999999999999999999988999999999999999999         


Q ss_pred             CCCCCcc-cccccccccccc---cCCccCccccC
Q psy8879         384 FNTMDLE-LIYSGVWRHSTL---LIPVMLSLCTR  413 (694)
Q Consensus       384 ~NpCdC~-l~~~~~wl~~~~---~~~~~~~~C~~  413 (694)
                         |+|. +.|+..|+....   +.......|..
T Consensus       219 ---c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~  249 (270)
T 2o6q_A          219 ---CTCNGIIYMAKWLKKKADEGLGGVDTAGCEK  249 (270)
T ss_dssp             ---CSSSSSHHHHHHHHHHHHTTCSSTTCCBBSS
T ss_pred             ---CCCccHHHHHHHHHhhccccccCccccccCC
Confidence               9997 788999986332   22334567753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5.6e-27  Score=260.13  Aligned_cols=258  Identities=28%  Similarity=0.439  Sum_probs=205.6

Q ss_pred             CCCCCCCCCCCCCCCC-CCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCC-ccccCCCCccEEEccCCCC
Q psy8879          53 PWSCPSIKNDLCACDL-PHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSGEL  130 (694)
Q Consensus        53 ~~~Cp~~~~~~C~C~~-~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n~i  130 (694)
                      ...||.    .|.|.. ...+.|..  ..+..+|..+.     ..++.|++++|+++.++ ..|..+++|++|++++|.+
T Consensus        32 ~~~Cp~----~C~C~~~~~~v~c~~--~~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i  100 (440)
T 3zyj_A           32 AQTCPS----VCSCSNQFSKVICVR--KNLREVPDGIS-----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI  100 (440)
T ss_dssp             -CCCCS----SSEECTTSCEEECCS--CCCSSCCSCCC-----TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC
T ss_pred             cccCCC----CCEeCCCCCEEEeCC--CCcCcCCCCCC-----CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC
Confidence            346887    899974 35688865  34666776553     38999999999998886 6788899999999999999


Q ss_pred             CCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecC-CCCCCCCc
Q psy8879         131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY-NKLMTLSQ  209 (694)
Q Consensus       131 ~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~-N~l~~i~~  209 (694)
                      +.+...+|.++.. |++|+|++|.++.+++..|..+ ++|++|+|++|.++.+++..|.++++|++|++++ |.+..+++
T Consensus       101 ~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          101 RTIEIGAFNGLAN-LNTLELFDNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             CEECGGGGTTCSS-CCEEECCSSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CccChhhccCCcc-CCEEECCCCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence            9999999988764 9999999999999999899999 9999999999999999999999999999999998 55777887


Q ss_pred             cccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCc
Q psy8879         210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD  289 (694)
Q Consensus       210 ~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~  289 (694)
                      ..|..+++|++|++++|+++.. | .+..+++|++|++++|.+.+ +.+..|..+++|+.|+|++|+++.+.+..|.+++
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  255 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ  255 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred             chhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence            8899999999999999988743 3 35666677777777777765 3466666777777777777777776666666677


Q ss_pred             ccceecccCCccccccchhhhcccccccccCCCCccc
Q psy8879         290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV  326 (694)
Q Consensus       290 ~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~  326 (694)
                      +|++|+|++|+++.+++..|..+++|+.|+|++|.+.
T Consensus       256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            7777777777777666666666667777777766654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=1.1e-26  Score=244.20  Aligned_cols=217  Identities=29%  Similarity=0.346  Sum_probs=166.5

Q ss_pred             cccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCccc
Q psy8879         163 LAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSV  242 (694)
Q Consensus       163 ~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L  242 (694)
                      +.++ ++|+++++++|.++.+++..+   ++++.|+|++|.++++.+..|..+++|++|++++|.+++..+.  ..+++|
T Consensus         6 ~~~l-~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKV-ASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECS-TTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             cccc-CCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            3344 555555555555555553221   3555566666665555555555666666666666665543222  456667


Q ss_pred             ccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCC
Q psy8879         243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH  322 (694)
Q Consensus       243 ~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~  322 (694)
                      ++|++++|.+.. + |..+..+++|+.|++++|+++++++..|.++++|++|+|++|+++.+++..|..+++|+.|+|++
T Consensus        80 ~~L~Ls~N~l~~-l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           80 GTLDLSHNQLQS-L-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CEEECCSSCCSS-C-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCc-C-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            777777777764 3 55677888899999999999988888899999999999999999999988899999999999999


Q ss_pred             CccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccc
Q psy8879         323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHS  400 (694)
Q Consensus       323 N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~  400 (694)
                      |+++++++..|..+++|+.|+|++|+++.++...+ .+.+|+.|+|++|+|.            |+|++.||..|++.
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~------------C~c~~~~l~~wl~~  222 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL------------CNCEILYFRRWLQD  222 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBC------------CSGGGHHHHHHHHH
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCcc------------CcCccHHHHHHHHh
Confidence            99999988889999999999999999999987755 4679999999999999            99999999999963

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=9.2e-26  Score=252.18  Aligned_cols=254  Identities=22%  Similarity=0.289  Sum_probs=172.4

Q ss_pred             CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      ..|+.|++++|.++.+|  +..+++|++|++++|.++.++   |.++ ++|++|++++|.++.++   +..+ ++|++|+
T Consensus        64 ~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l-~~L~~L~L~~N~l~~l~---~~~l-~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---VTPL-TKLTYLNCDTNKLTKLD---VSQN-PLLTYLN  133 (457)
T ss_dssp             TTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTC-TTCCEEECCSSCCSCCC---CTTC-TTCCEEE
T ss_pred             CCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee---cCCC-CcCCEEECCCCcCCeec---CCCC-CcCCEEE
Confidence            47777888888877775  667777888888888777764   4443 34888888888877764   5666 7788888


Q ss_pred             ccCCCCCCCCcccccCCCCccEEEecCCC-CCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879         175 LSHNQLYKLENTSFKGLSSLNFLDLSYNK-LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA  253 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~-l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~  253 (694)
                      +++|++++++   ++++++|++|++++|+ +..+   .+..+++|++|++++|++++. +  +..+++|+.|++++|.+.
T Consensus       134 l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          134 CARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             CTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCS
T ss_pred             CCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCC
Confidence            8888777763   6677788888888874 3333   367778888888888888863 3  777888888888888887


Q ss_pred             CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccc-------ccccccCCCCccc
Q psy8879         254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALS-------TLSHLDLAHNRIV  326 (694)
Q Consensus       254 ~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~-------~L~~L~Ls~N~L~  326 (694)
                      +.    .+..+++|+.|++++|++++++   +..+++|+.|++++|+++.++...+..++       +|+.|++++|.+.
T Consensus       205 ~~----~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~  277 (457)
T 3bz5_A          205 KL----DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL  277 (457)
T ss_dssp             CC----CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred             ee----ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccC
Confidence            62    3777888888888888888864   67788888999998888887765554443       3445555555433


Q ss_pred             cccccchhcccccCeeecCCCCCCCcCh--------hhhCCCCCCCEEEccCCCCCCC
Q psy8879         327 AVSGASLAHLSNLTTLDLSHNFLRALTQ--------DLITPLKSLQELRLDDNDISME  376 (694)
Q Consensus       327 ~i~~~~f~~l~~L~~L~Ls~N~L~~l~~--------~~~~~l~~L~~L~Ls~N~L~~l  376 (694)
                      +..|  +..+++|+.|++++|...+..+        -.+..+++|+.|++++|+++++
T Consensus       278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l  333 (457)
T 3bz5_A          278 IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL  333 (457)
T ss_dssp             CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred             Cccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc
Confidence            3222  2344555555555554221110        0134445566666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2e-26  Score=256.63  Aligned_cols=257  Identities=30%  Similarity=0.452  Sum_probs=185.1

Q ss_pred             CCCCCCCCCCCCCCCC-CCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCC-CccccCCCCccEEEccCCCC
Q psy8879          53 PWSCPSIKNDLCACDL-PHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVL-PGKFLEGVTLHGLVISSGEL  130 (694)
Q Consensus        53 ~~~Cp~~~~~~C~C~~-~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~l-p~~~~~~~~L~~L~Ls~n~i  130 (694)
                      .+.||.    .|.|.. ...+.|...  .+..+|..+.     ..++.|++++|+++.+ +..|..+++|++|++++|.+
T Consensus        43 ~~~Cp~----~C~C~~~~~~v~c~~~--~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i  111 (452)
T 3zyi_A           43 PQNCPS----VCSCSNQFSKVVCTRR--GLSEVPQGIP-----SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI  111 (452)
T ss_dssp             -CCCCT----TSEECSSSCEEECCSS--CCSSCCSCCC-----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCCC----CCEECCCCcEEEECCC--CcCccCCCCC-----CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc
Confidence            457887    899974 356888653  4666666553     3899999999999887 56788899999999999999


Q ss_pred             CCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecC-CCCCCCCc
Q psy8879         131 KNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSY-NKLMTLSQ  209 (694)
Q Consensus       131 ~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~-N~l~~i~~  209 (694)
                      +.+....|.++.. |++|+|++|.++.+++..|..+ ++|++|+|++|+++.+++..|.++++|++|++++ |.+..+++
T Consensus       112 ~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          112 RQIEVGAFNGLAS-LNTLELFDNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             CEECTTTTTTCTT-CCEEECCSSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CCcChhhccCccc-CCEEECCCCcCCccChhhhccc-CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence            9999999988765 9999999999999999999999 9999999999999999999999999999999998 56777777


Q ss_pred             cccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCc
Q psy8879         210 DCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD  289 (694)
Q Consensus       210 ~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~  289 (694)
                      ..|..+++|++|++++|++++. | .+..+++|++|++++|.+.+ +.+..|..+++|+.|+|++|+++.+.+..|.+++
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  266 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA  266 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence            7788888888888888877743 2 34444555555555555543 2244444445555555555555544444444444


Q ss_pred             ccceecccCCccccccchhhhcccccccccCCCCcc
Q psy8879         290 KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI  325 (694)
Q Consensus       290 ~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L  325 (694)
                      +|++|+|++|+++.+++..|..+++|+.|+|++|.+
T Consensus       267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            555555555544444444444444444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1e-26  Score=244.91  Aligned_cols=257  Identities=27%  Similarity=0.418  Sum_probs=196.4

Q ss_pred             CCCCCCCCCCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCcc-ccCCCCccEEEccCCCCCCCC
Q psy8879          56 CPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGK-FLEGVTLHGLVISSGELKNIS  134 (694)
Q Consensus        56 Cp~~~~~~C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~~-~~~~~~L~~L~Ls~n~i~~i~  134 (694)
                      ||.    .|.|.+ ..+.|...  .+..+|..+.     ..++.|++++|+++.+|.. +..+++|++|++++|.++.+.
T Consensus         1 CP~----~C~C~~-~~l~c~~~--~l~~ip~~~~-----~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~   68 (306)
T 2z66_A            1 CPS----RCSCSG-TEIRCNSK--GLTSVPTGIP-----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG   68 (306)
T ss_dssp             CCT----TCEEET-TEEECCSS--CCSSCCSCCC-----TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred             CcC----CCeeCC-CEEEcCCC--CcccCCCCCC-----CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence            777    899975 46888654  3556665442     3899999999999999876 578899999999999998664


Q ss_pred             --cchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCc-ccccCCCCccEEEecCCCCCCCCccc
Q psy8879         135 --DGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYNKLMTLSQDC  211 (694)
Q Consensus       135 --~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N~l~~i~~~~  211 (694)
                        ...+.++ .+|++|++++|.++.++.. +..+ ++|++|++++|.++.+++ ..|.++++|++|++++|.+.+..+..
T Consensus        69 ~~~~~~~~~-~~L~~L~Ls~n~i~~l~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  145 (306)
T 2z66_A           69 CCSQSDFGT-TSLKYLDLSFNGVITMSSN-FLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI  145 (306)
T ss_dssp             EEEHHHHSC-SCCCEEECCSCSEEEEEEE-EETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred             Ccccccccc-cccCEEECCCCccccChhh-cCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence              3455554 4599999999998887764 7777 899999999998888775 57888888999999988888888888


Q ss_pred             cCCCCCCcEEeccCCcccc-hhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcc
Q psy8879         212 LAPLVTLRVLRLQGNRLTV-SVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDK  290 (694)
Q Consensus       212 f~~L~~L~~L~Ls~N~l~~-~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~  290 (694)
                      |..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+ +.+..+..+++|++|++++|.++++++..+.++++
T Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred             cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence            8888888888888888875 456677777777777777777765 33566777777777777777777776666666777


Q ss_pred             cceecccCCccccccchhhhccc-ccccccCCCCccccc
Q psy8879         291 LTSLSCHHNQIDVLEDHSFRALS-TLSHLDLAHNRIVAV  328 (694)
Q Consensus       291 L~~L~Ls~N~L~~i~~~~f~~l~-~L~~L~Ls~N~L~~i  328 (694)
                      |++|++++|+++...+..+..++ +|+.|+|++|+++..
T Consensus       225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            77777777777766666666663 677777777776653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=9.9e-27  Score=247.10  Aligned_cols=214  Identities=24%  Similarity=0.314  Sum_probs=119.2

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ  224 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls  224 (694)
                      |++|+|++|.++.+++..|..+ ++|++|+|++|.++++.+  |..+++|++|++++|+++++++     .++|++|+++
T Consensus        36 L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~  107 (317)
T 3o53_A           36 VKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (317)
T ss_dssp             CSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC-----CCCcCEEECC
Confidence            5555555555555555455555 555555555555554443  5555555555555555554432     1455555555


Q ss_pred             CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccc-cCCcccceecccCCcccc
Q psy8879         225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL-AGLDKLTSLSCHHNQIDV  303 (694)
Q Consensus       225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~-~~L~~L~~L~Ls~N~L~~  303 (694)
                      +|++++..+..   +++|++|++++|.+.+ +.+..+..+++|++|++++|.++++.+..+ ..+++|++|++++|.++.
T Consensus       108 ~n~l~~~~~~~---~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          108 NNNISRVSCSR---GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             SSCCSEEEECC---CSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCccCCcCccc---cCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            55555433322   3445555555555554 224445555666666666666665554444 245666666666666665


Q ss_pred             ccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879         304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       304 i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~  374 (694)
                      ++...  .+++|+.|+|++|+++++++. +..+++|+.|+|++|++++++.. +..+++|+.|++++|++.
T Consensus       184 ~~~~~--~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          184 VKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EECCC--CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCB
T ss_pred             ccccc--ccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCcc
Confidence            54322  356666666666666666444 55666666666666666665543 555666666666666665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.8e-27  Score=251.30  Aligned_cols=259  Identities=20%  Similarity=0.230  Sum_probs=220.7

Q ss_pred             CeeEEEcCCCCCCCCCccc-cCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          96 RVSLLDCTLSNVTVLPGKF-LEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~-~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      +++..+++.+.+...+..+ ...++|++|++++|.++.+.+..|.++. +|++|+|++|.++++++  +..+ ++|++|+
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l-~~L~~L~   86 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESL-STLRTLD   86 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTC-TTCCEEE
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhc-CCCCEEE
Confidence            6777888888886655444 3456899999999999999888887765 49999999999988776  7888 9999999


Q ss_pred             ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC
Q psy8879         175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG  254 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~  254 (694)
                      +++|.+++++.     .++|++|++++|+++++++.   .+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus        87 Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           87 LNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             CCSSEEEEEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             CcCCccccccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            99999887653     38999999999999988765   36789999999999998888899999999999999999986


Q ss_pred             CCCCCCC-CCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccch
Q psy8879         255 PLGPSTV-PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL  333 (694)
Q Consensus       255 ~i~p~~~-~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f  333 (694)
                      .. +..+ ..+++|++|++++|.+++++..  ..+++|++|++++|+++.+++. |..+++|+.|+|++|++++++ ..+
T Consensus       159 ~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~-~~~  233 (317)
T 3o53_A          159 VN-FAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KAL  233 (317)
T ss_dssp             EE-GGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTC
T ss_pred             cc-HHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh-hHh
Confidence            43 4444 4789999999999999998543  3589999999999999998875 889999999999999999874 558


Q ss_pred             hcccccCeeecCCCCCC-CcChhhhCCCCCCCEEEccCC
Q psy8879         334 AHLSNLTTLDLSHNFLR-ALTQDLITPLKSLQELRLDDN  371 (694)
Q Consensus       334 ~~l~~L~~L~Ls~N~L~-~l~~~~~~~l~~L~~L~Ls~N  371 (694)
                      ..+++|+.|+|++|.+. +..+.++..+++|+.+++++|
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            88999999999999998 666777888999999998844

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.4e-27  Score=251.30  Aligned_cols=248  Identities=22%  Similarity=0.210  Sum_probs=140.5

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcC-------CCCCccEEEccCCCCCC-CCcccc-ccC
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIG-------LSSPLQALGLPNNLLSV-VPTSAL-APL  166 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~-------l~~~L~~L~Ls~N~L~~-lp~~~~-~~l  166 (694)
                      +|+.+++++|.+ .+|..+...  |+.|++++|.++.+....+..       ...+|++|++++|.+++ +|...| ..+
T Consensus        44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            344455555555 555544432  555555555554322111111       12235555555555553 332221 444


Q ss_pred             CCCccEEEccCCCCCCCCcccccCC-----CCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchh--hhhhccC
Q psy8879         167 APNLDRLDLSHNQLYKLENTSFKGL-----SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV--VAALQGL  239 (694)
Q Consensus       167 ~~~L~~L~Ls~N~L~~i~~~~f~~L-----~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~--~~~~~~L  239 (694)
                       ++|++|+|++|+++++ +..+.++     ++|++|++++|++.++++..|..+++|++|++++|++.+..  +..+   
T Consensus       121 -~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---  195 (312)
T 1wwl_A          121 -PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL---  195 (312)
T ss_dssp             -CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS---
T ss_pred             -CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH---
Confidence             5555555555555555 3344443     55555555555555555555555555555555555544321  1111   


Q ss_pred             cccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccc---cccccccCCcccceecccCCccccccc-hhhhccccc
Q psy8879         240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS---VRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTL  315 (694)
Q Consensus       240 ~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~---i~~~~~~~L~~L~~L~Ls~N~L~~i~~-~~f~~l~~L  315 (694)
                                          .+..+++|++|++++|++++   ++...+.++++|++|++++|+++..++ ..+..+++|
T Consensus       196 --------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          196 --------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             --------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             --------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence                                12445566666666666663   233344566777777777777776542 445566778


Q ss_pred             ccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879         316 SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME  376 (694)
Q Consensus       316 ~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l  376 (694)
                      +.|+|++|+|+.++... .  ++|+.|+|++|++++++.  +..+++|+.|++++|+|++.
T Consensus       256 ~~L~Ls~N~l~~ip~~~-~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          256 NSLNLSFTGLKQVPKGL-P--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CEEECTTSCCSSCCSSC-C--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred             CEEECCCCccChhhhhc-c--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence            88888888887664433 2  778888888888888744  77788888888888888753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=6.6e-25  Score=227.77  Aligned_cols=222  Identities=24%  Similarity=0.320  Sum_probs=130.1

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .++|++.++..+|..+.  ++|++|++++|.++.++...|.++. +|++|++++|.++.+++..|.++ ++|++|+|++|
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCC-cCCCEEECCCC
Confidence            35666667777776553  3567777777777766665565544 37777777777766666666666 67777777777


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccch-hhhhhccCcccccccCCCCcCCCCCC
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS-VVAALQGLRSVTDLDLSHNLLAGPLG  257 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~~~~~~~L~~L~~L~Ls~N~l~~~i~  257 (694)
                      .++.+++..|.++++|++|++++|++.++.+..+..+++|++|++++|++++. .|..+.++++|++|++++|++.    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~----  162 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ----  162 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC----
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC----
Confidence            76666666666666777777777666666665566666666666666666542 2444444455555555554444    


Q ss_pred             CCCCCCccccceeeccCCcccccccccccCCcccc----eecccCCccccccchhhhcccccccccCCCCccccccccch
Q psy8879         258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT----SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL  333 (694)
Q Consensus       258 p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~----~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f  333 (694)
                                           ++++..+..+++|+    +|++++|.++.+++..+.. .+|+.|++++|+++++++..|
T Consensus       163 ---------------------~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~  220 (276)
T 2z62_A          163 ---------------------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIF  220 (276)
T ss_dssp             ---------------------EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTT
T ss_pred             ---------------------cCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHh
Confidence                                 44333333333333    4455555555444443332 245555555555555555555


Q ss_pred             hcccccCeeecCCCCCC
Q psy8879         334 AHLSNLTTLDLSHNFLR  350 (694)
Q Consensus       334 ~~l~~L~~L~Ls~N~L~  350 (694)
                      ..+++|+.|+|++|.+.
T Consensus       221 ~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          221 DRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             TTCCSCCEEECCSSCBC
T ss_pred             cccccccEEEccCCccc
Confidence            55555555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=5e-27  Score=248.79  Aligned_cols=224  Identities=20%  Similarity=0.180  Sum_probs=165.1

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCC-ccccc-------CCCCccEEEecCCCCCCCCcccc--CC
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE-NTSFK-------GLSSLNFLDLSYNKLMTLSQDCL--AP  214 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~-~~~f~-------~L~~L~~L~Ls~N~l~~i~~~~f--~~  214 (694)
                      |++|++++|.+ .+|.. +.   ..|++|+|++|.++... +..+.       ++++|++|++++|++++..+..+  ..
T Consensus        45 L~~l~l~~n~l-~~p~~-~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           45 LEYLLKRVDTE-ADLGQ-FT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             CTTHHHHCCTT-CCCHH-HH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             ceeEeeccccc-ccHHH-HH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            56666666666 55543 22   22666666666654321 11222       56777777777777776555444  67


Q ss_pred             CCCCcEEeccCCcccchhhhhhccC-----cccccccCCCCcCCCCCCCCCCCCccccceeeccCCccccc---c-cccc
Q psy8879         215 LVTLRVLRLQGNRLTVSVVAALQGL-----RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSV---R-RGAL  285 (694)
Q Consensus       215 L~~L~~L~Ls~N~l~~~~~~~~~~L-----~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i---~-~~~~  285 (694)
                      +++|++|++++|++++. |..+..+     ++|++|++++|.+.+ +.+..+..+++|++|++++|++.+.   + ...+
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            77777777777777765 6666655     788888888888876 4467888899999999999987653   2 1234


Q ss_pred             cCCcccceecccCCcccc---ccchhhhcccccccccCCCCccccccc-cchhcccccCeeecCCCCCCCcChhhhCCCC
Q psy8879         286 AGLDKLTSLSCHHNQIDV---LEDHSFRALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQDLITPLK  361 (694)
Q Consensus       286 ~~L~~L~~L~Ls~N~L~~---i~~~~f~~l~~L~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~  361 (694)
                      .++++|++|++++|+++.   ++...+..+++|+.|++++|++++..+ ..+..+++|+.|+|++|+++.++...+   +
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~  274 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---A  274 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---S
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---C
Confidence            889999999999999984   444556788999999999999999764 556778999999999999998887544   7


Q ss_pred             CCCEEEccCCCCCCCCc
Q psy8879         362 SLQELRLDDNDISMEPE  378 (694)
Q Consensus       362 ~L~~L~Ls~N~L~~l~~  378 (694)
                      +|+.|++++|+|+++|.
T Consensus       275 ~L~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRNPS  291 (312)
T ss_dssp             EEEEEECCSSCCCSCCC
T ss_pred             CceEEECCCCCCCCChh
Confidence            89999999999998865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.2e-24  Score=249.32  Aligned_cols=268  Identities=26%  Similarity=0.244  Sum_probs=215.6

Q ss_pred             CCCCC--CCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcC
Q psy8879          63 LCACD--LPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIG  140 (694)
Q Consensus        63 ~C~C~--~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~  140 (694)
                      .|.|.  ....+.|..+  .+..+|..+.     ..|+.|++++|+++.+|.   .+++|++|++++|.++.++.     
T Consensus        34 ~~~c~~~~l~~L~ls~n--~L~~lp~~l~-----~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----   98 (622)
T 3g06_A           34 MRACLNNGNAVLNVGES--GLTTLPDCLP-----AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV-----   98 (622)
T ss_dssp             HHHHHHHCCCEEECCSS--CCSCCCSCCC-----TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC-----
T ss_pred             cccccCCCCcEEEecCC--CcCccChhhC-----CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC-----
Confidence            45554  2345666543  3445555443     489999999999999887   46789999999999998876     


Q ss_pred             CCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcE
Q psy8879         141 LSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRV  220 (694)
Q Consensus       141 l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~  220 (694)
                      .+.+|++|++++|.++.+|.    .+ ++|++|++++|+++.++.    .+++|++|++++|++++++.    .+++|+.
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~----~l-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~  165 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA----LP-SGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCK  165 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC----CC-TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCE
T ss_pred             CCCCCCEEECcCCcCCCCCC----CC-CCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCE
Confidence            34569999999999999887    33 789999999999998875    35889999999999988754    3478999


Q ss_pred             EeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCc
Q psy8879         221 LRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ  300 (694)
Q Consensus       221 L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~  300 (694)
                      |++++|+++. +|   ..+++|+.|++++|.+.+ + |..   .++|+.|++++|.++.++.    .+++|++|++++|+
T Consensus       166 L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l-~~~---~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~  232 (622)
T 3g06_A          166 LWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-L-PTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNR  232 (622)
T ss_dssp             EECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C-CCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSC
T ss_pred             EECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-C-CCc---cchhhEEECcCCcccccCC----CCCCCCEEEccCCc
Confidence            9999999986 34   456889999999999986 4 332   4789999999999998764    34789999999999


Q ss_pred             cccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccc
Q psy8879         301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI  380 (694)
Q Consensus       301 L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~  380 (694)
                      |+.++    ..+++|+.|+|++|+|+.++.    .+++|+.|+|++|+|+.+|. .+..+++|+.|+|++|++++.++..
T Consensus       233 L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          233 LTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             cCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEecCCCCCCcCHHH
Confidence            99887    356899999999999998865    56899999999999998875 4788999999999999998765543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.1e-24  Score=223.68  Aligned_cols=201  Identities=28%  Similarity=0.393  Sum_probs=126.6

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      ..+.++|++++++.+|..+.  .++++|++++|.++.++..+|.++. +|++|++++|.++.+++..|.++ ++|++|+|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKEL-KNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSC-TTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCC-CCCCEEEC
Confidence            34568888888888887654  4677777777777777766666554 37777777777777776666666 67777777


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      ++|.++.+++..|.++++|++|++++|+++.+++..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+ 
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-  171 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-  171 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-
Confidence            7777777666666667777777777777776666666666666666666666665444445555555555555555543 


Q ss_pred             CCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI  301 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L  301 (694)
                      +++..|..+++|+.|++++|.++++++..|..+++|+.|++++|.+
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            3334444455555555555555544444444444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=6.1e-25  Score=234.82  Aligned_cols=236  Identities=23%  Similarity=0.216  Sum_probs=134.5

Q ss_pred             CCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEE
Q psy8879         118 VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFL  197 (694)
Q Consensus       118 ~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L  197 (694)
                      .+++.|++++|.++.++...+ . +.+|++|+|++|.++.+|. .+.++ ++|++|+|++|.++.++ ..|.++++|++|
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~-~-l~~L~~L~L~~n~l~~lp~-~~~~l-~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAF-R-LSHLQHMTIDAAGLMELPD-TMQQF-AGLETLTLARNPLRALP-ASIASLNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGG-G-GTTCSEEEEESSCCCCCCS-CGGGG-TTCSEEEEESCCCCCCC-GGGGGCTTCCEE
T ss_pred             cceeEEEccCCCchhcChhhh-h-CCCCCEEECCCCCccchhH-HHhcc-CCCCEEECCCCccccCc-HHHhcCcCCCEE
Confidence            445566666666665554322 2 2335666666665555543 34555 55566666655555443 345555555555


Q ss_pred             EecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcc
Q psy8879         198 DLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF  277 (694)
Q Consensus       198 ~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L  277 (694)
                      ++++|++.+..|..+..      .         ..+..|.++++|++|++++|.+.. + |..+..+++|++|++++|.+
T Consensus       156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~~-l-p~~l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIRS-L-PASIANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCCC-C-CGGGGGCTTCCEEEEESSCC
T ss_pred             ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcCc-c-hHhhcCCCCCCEEEccCCCC
Confidence            55555444333332221      0         000112335666666666666652 3 44566666666666666666


Q ss_pred             cccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhh
Q psy8879         278 SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLI  357 (694)
Q Consensus       278 ~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~  357 (694)
                      +++++ .+.++++|++|++++|++....+..|..+++|+.|+|++|++.+..|..+.++++|+.|+|++|.+.+..|..+
T Consensus       219 ~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          219 SALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             CcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            66544 35666666666666666665555566666677777777766666666666677777777777766666555666


Q ss_pred             CCCCCCCEEEccCCCCCCC
Q psy8879         358 TPLKSLQELRLDDNDISME  376 (694)
Q Consensus       358 ~~l~~L~~L~Ls~N~L~~l  376 (694)
                      ..+++|+.+++..|.+..+
T Consensus       298 ~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          298 AQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             GGSCTTCEEECCGGGSCC-
T ss_pred             hhccCceEEeCCHHHHHHH
Confidence            6677777777766655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=7.1e-26  Score=255.07  Aligned_cols=215  Identities=23%  Similarity=0.301  Sum_probs=118.2

Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL  223 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L  223 (694)
                      +|++|+|++|.++.+++..|..+ ++|++|+|++|.++++++  |.++++|++|+|++|.++++++.     ++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----TTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----CCcCEEEC
Confidence            35555555555555555455555 555555555555554443  55555555555555555544322     45555555


Q ss_pred             cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCccccccccccc-CCcccceecccCCccc
Q psy8879         224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCHHNQID  302 (694)
Q Consensus       224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~-~L~~L~~L~Ls~N~L~  302 (694)
                      ++|.+++..+.   .+++|+.|++++|.+.+. .+..+..+++|+.|+|++|.++++++..+. .+++|++|+|++|.++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            55555544332   234555555555555542 244455555666666666666555544443 4556666666666665


Q ss_pred             cccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879         303 VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       303 ~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~  374 (694)
                      .++.  +..+++|+.|+|++|+++++++. +..+++|+.|+|++|.+++++.. +..+++|+.|++++|++.
T Consensus       183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBC
T ss_pred             cccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCc
Confidence            5543  22356666666666666665444 55566666666666666665543 455566666666666665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.7e-24  Score=231.34  Aligned_cols=228  Identities=18%  Similarity=0.221  Sum_probs=153.7

Q ss_pred             CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      ..++.|++++|+++.+|..+.++++|++|++++|.++.++. .|..+ .+|++|+|++|.++.+|. .+.++ ++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l-~~L~~L~Ls~n~l~~lp~-~l~~l-~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQF-AGLETLTLARNPLRALPA-SIASL-NRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGGGG-TTCSEEEEESCCCCCCCG-GGGGC-TTCCEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHhcc-CCCCEEECCCCccccCcH-HHhcC-cCCCEEE
Confidence            38999999999999999999999999999999999997764 45554 459999999999998876 48888 9999999


Q ss_pred             ccCCCCCCCCccccc---------CCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccc
Q psy8879         175 LSHNQLYKLENTSFK---------GLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDL  245 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~---------~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L  245 (694)
                      |++|++.+..+..+.         ++++|++|++++|+++.++ ..+..+++|++|++++|++++ +|..+..++     
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~-----  229 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSA-LGPAIHHLP-----  229 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCC-CCGGGGGCT-----
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCc-CchhhccCC-----
Confidence            999876655544443         3555666666655555443 235555555555555555553 233344444     


Q ss_pred             cCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcc
Q psy8879         246 DLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRI  325 (694)
Q Consensus       246 ~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L  325 (694)
                                          +|++|++++|.+.+..+..+.++++|++|++++|++.+..+..+..+++|+.|+|++|++
T Consensus       230 --------------------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          230 --------------------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             --------------------TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             --------------------CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence                                455555555444444444455555555555555555544444566666666777776666


Q ss_pred             ccccccchhcccccCeeecCCCCCCCcC
Q psy8879         326 VAVSGASLAHLSNLTTLDLSHNFLRALT  353 (694)
Q Consensus       326 ~~i~~~~f~~l~~L~~L~Ls~N~L~~l~  353 (694)
                      .+..|..+.++++|+.+++..|.+..+.
T Consensus       290 ~~~iP~~l~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          290 LSRLPSLIAQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             CCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred             hhhccHHHhhccCceEEeCCHHHHHHHh
Confidence            6666666777777777777666555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=5.7e-24  Score=237.66  Aligned_cols=252  Identities=23%  Similarity=0.318  Sum_probs=211.7

Q ss_pred             CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      ..|+.|++++|.++.+| .+..+++|++|++++|.++.++   |..+ .+|++|++++|.+++++   +.++ ++|++|+
T Consensus        42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l-~~L~~L~Ls~N~l~~~~---~~~l-~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQN-TNLTYLACDSNKLTNLD---VTPL-TKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTC-TTCSEEECCSSCCSCCC---CTTC-TTCCEEE
T ss_pred             CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccC-CCCCEEECcCCCCceee---cCCC-CcCCEEE
Confidence            48999999999999987 6889999999999999999985   4444 46999999999999985   7788 9999999


Q ss_pred             ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC
Q psy8879         175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG  254 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~  254 (694)
                      +++|++++++   ++++++|++|++++|++++++   +..+++|++|++++|+..+..  .+..+++|++|++++|++++
T Consensus       113 L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          113 CDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence            9999999874   889999999999999999973   788999999999999655444  57889999999999999997


Q ss_pred             CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879         255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA  334 (694)
Q Consensus       255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~  334 (694)
                       + +  +..+++|+.|++++|.++++   .+..+++|++|++++|+++.++   +..+++|+.|++++|+++++++..+.
T Consensus       185 -l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~  254 (457)
T 3bz5_A          185 -L-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLS  254 (457)
T ss_dssp             -C-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred             -e-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence             4 3  78899999999999999988   3788999999999999999976   78899999999999999998755444


Q ss_pred             ccc-------ccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCC
Q psy8879         335 HLS-------NLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISM  375 (694)
Q Consensus       335 ~l~-------~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~  375 (694)
                      .+.       +|+.|++++|.+.+..+  +..+++|+.|++++|+..+
T Consensus       255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~  300 (457)
T 3bz5_A          255 KLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY  300 (457)
T ss_dssp             TCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred             CCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence            333       34455555554333222  4568999999999997543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=6.9e-25  Score=247.03  Aligned_cols=244  Identities=21%  Similarity=0.236  Sum_probs=211.3

Q ss_pred             CCCccccCC----CCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCC
Q psy8879         109 VLPGKFLEG----VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE  184 (694)
Q Consensus       109 ~lp~~~~~~----~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~  184 (694)
                      .+|..+..+    ++|++|++++|.+..+.+..|.++. +|++|+|++|.++++++  +..+ ++|++|+|++|.|++++
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l~   96 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQELL   96 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEEE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCCC
Confidence            345444444    3899999999999999988887765 59999999999998776  8888 99999999999998776


Q ss_pred             cccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCC-C
Q psy8879         185 NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP-R  263 (694)
Q Consensus       185 ~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~-~  263 (694)
                      +     .++|++|++++|.++++++.   .+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.. +..+. .
T Consensus        97 ~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~  167 (487)
T 3oja_A           97 V-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAAS  167 (487)
T ss_dssp             E-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-GGGGGGG
T ss_pred             C-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-hHHHhhh
Confidence            4     38999999999999998775   4588999999999999988999999999999999999999754 55554 7


Q ss_pred             ccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeee
Q psy8879         264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD  343 (694)
Q Consensus       264 l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~  343 (694)
                      +++|+.|+|++|.++++++  +..+++|++|+|++|.++.+++. |..+++|+.|+|++|.+++++ ..+..+++|+.|+
T Consensus       168 l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~  243 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFD  243 (487)
T ss_dssp             TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEE
T ss_pred             CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc-hhhccCCCCCEEE
Confidence            8999999999999999854  34689999999999999999875 889999999999999999974 4588899999999


Q ss_pred             cCCCCCC-CcChhhhCCCCCCCEEEcc
Q psy8879         344 LSHNFLR-ALTQDLITPLKSLQELRLD  369 (694)
Q Consensus       344 Ls~N~L~-~l~~~~~~~l~~L~~L~Ls  369 (694)
                      +++|.+. +..+..+..++.|+.++++
T Consensus       244 l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          244 LRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            9999998 5556677888888888876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=2.2e-23  Score=232.68  Aligned_cols=243  Identities=25%  Similarity=0.305  Sum_probs=158.6

Q ss_pred             CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      ..|+.|++++|.++.+| .+..+++|++|++++|.++.++..     ..+|++|++++|.++.+|  .+.++ ++|++|+
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~l~--~~~~l-~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEELP--ELQNL-PFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSSCC--CCTTC-TTCCEEE
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCcCc--cccCC-CCCCEEE
Confidence            35666666666666666 466666667777766666665432     124667777777666665  25666 6677777


Q ss_pred             ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC
Q psy8879         175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG  254 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~  254 (694)
                      +++|.+++++..    .++|++|++++|.++.++  .+..+++|++|++++|++++ +|.   .+++|++|++++|.+.+
T Consensus       202 l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          202 ADNNSLKKLPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CCSSCCSSCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc
Confidence            777766665431    246667777777666554  26667777777777777664 222   23566777777777665


Q ss_pred             CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879         255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA  334 (694)
Q Consensus       255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~  334 (694)
                       + |..   .++|+.|++++|.+++++..    .++|++|++++|+++.++.    -.++|+.|++++|++++++..   
T Consensus       272 -l-~~~---~~~L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~---  335 (454)
T 1jl5_A          272 -L-PEL---PQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL---  335 (454)
T ss_dssp             -C-CCC---CTTCCEEECCSSCCSEESCC----CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCCC---
T ss_pred             -c-Ccc---cCcCCEEECcCCccCcccCc----CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccccccc---
Confidence             3 222   25677777777777665321    1567777777777765442    114788888888888886432   


Q ss_pred             cccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCC
Q psy8879         335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP  377 (694)
Q Consensus       335 ~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~  377 (694)
                       +++|+.|++++|++++++.    .+++|+.|++++|+++++|
T Consensus       336 -~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~  373 (454)
T 1jl5_A          336 -PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFP  373 (454)
T ss_dssp             -CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC
T ss_pred             -CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCC
Confidence             5788889999998888776    3678889999988888744

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=2.2e-24  Score=219.14  Aligned_cols=196  Identities=26%  Similarity=0.404  Sum_probs=133.2

Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCC-CCCCCcccccCCCCccEEEecC-CCCCCCCccccCCCCCCcEE
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ-LYKLENTSFKGLSSLNFLDLSY-NKLMTLSQDCLAPLVTLRVL  221 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~-L~~i~~~~f~~L~~L~~L~Ls~-N~l~~i~~~~f~~L~~L~~L  221 (694)
                      +|++|++++|.++.+++..|.++ ++|++|++++|+ ++.+++..|.++++|++|++++ |+++.+++..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            45555555555555555555555 555555555554 5555555555555555555555 55555554445555555555


Q ss_pred             eccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccc---eeeccCC-cccccccccccCCcccc-eecc
Q psy8879         222 RLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK---VLSIAHN-QFSSVRRGALAGLDKLT-SLSC  296 (694)
Q Consensus       222 ~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~---~L~Ls~N-~L~~i~~~~~~~L~~L~-~L~L  296 (694)
                      ++++|+                        +.+ + |. +..+++|+   .|++++| .++.+++..|.++++|+ +|++
T Consensus       111 ~l~~n~------------------------l~~-l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C          111 GIFNTG------------------------LKM-F-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             EEEEEC------------------------CCS-C-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred             eCCCCC------------------------Ccc-c-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence            555544                        443 2 22 44555555   8888888 88888877788888888 8888


Q ss_pred             cCCccccccchhhhcccccccccCCCCc-cccccccchhcc-cccCeeecCCCCCCCcChhhhCCCCCCCEEEccCC
Q psy8879         297 HHNQIDVLEDHSFRALSTLSHLDLAHNR-IVAVSGASLAHL-SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN  371 (694)
Q Consensus       297 s~N~L~~i~~~~f~~l~~L~~L~Ls~N~-L~~i~~~~f~~l-~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N  371 (694)
                      ++|+++.++...|.. ++|+.|++++|+ ++++++..|.++ ++|+.|++++|+++++++.   .+++|+.|+++++
T Consensus       164 ~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          164 YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            888888888777776 788888888884 888888888888 8899999999999888765   4677888888875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=7.2e-24  Score=215.40  Aligned_cols=191  Identities=18%  Similarity=0.323  Sum_probs=122.1

Q ss_pred             CCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCC-CCCCCccccccCCCCccEEEccC-CCCCCCC
Q psy8879         107 VTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL-LSVVPTSALAPLAPNLDRLDLSH-NQLYKLE  184 (694)
Q Consensus       107 l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~-L~~lp~~~~~~l~~~L~~L~Ls~-N~L~~i~  184 (694)
                      ++.+|. +.  .+|++|++++|.++.++...|.++. +|++|++++|. ++.+++..|.++ ++|++|++++ |+++.++
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEEC
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcC
Confidence            444554 32  2677777777777777777776654 48888888886 888887778887 8888888887 8888888


Q ss_pred             cccccCCCCccEEEecCCCCCCCCccccCCCCCCc---EEeccCC-cccchhhhhhccCcccc-cccCCCCcCCCCCCCC
Q psy8879         185 NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR---VLRLQGN-RLTVSVVAALQGLRSVT-DLDLSHNLLAGPLGPS  259 (694)
Q Consensus       185 ~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~---~L~Ls~N-~l~~~~~~~~~~L~~L~-~L~Ls~N~l~~~i~p~  259 (694)
                      +..|.++++|++|++++|++++++.  |..+++|+   +|++++| +++...+..|.++++|+ +|++++|.+. .+++.
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~  174 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY  174 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT
T ss_pred             HHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh
Confidence            7788888888888888888887654  66777776   7777777 66654444455555555 5555555544 23333


Q ss_pred             CCCCccccceeeccCCc-ccccccccccCC-cccceecccCCccccccc
Q psy8879         260 TVPRLSSLKVLSIAHNQ-FSSVRRGALAGL-DKLTSLSCHHNQIDVLED  306 (694)
Q Consensus       260 ~~~~l~~L~~L~Ls~N~-L~~i~~~~~~~L-~~L~~L~Ls~N~L~~i~~  306 (694)
                      .+.. ++|+.|++++|+ ++.+++..|.++ ++|++|++++|+++.++.
T Consensus       175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~  222 (239)
T 2xwt_C          175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS  222 (239)
T ss_dssp             TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred             hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence            3333 445555555552 444444444444 444444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=7.2e-24  Score=217.29  Aligned_cols=170  Identities=29%  Similarity=0.417  Sum_probs=132.0

Q ss_pred             CCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecc
Q psy8879         217 TLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC  296 (694)
Q Consensus       217 ~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~L  296 (694)
                      +++.|++++|++++..+..|.++++|++|++++|.+.+ +.+..+..+++|++|+|++|.++++++..|.++++|++|+|
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            44444444444444444444445555555555555544 33555666777777777777777777777777888888888


Q ss_pred             cCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCC
Q psy8879         297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISME  376 (694)
Q Consensus       297 s~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l  376 (694)
                      ++|+|+.+++..|..+++|+.|+|++|+++++++..|..+++|+.|+|++|+++++++..+..+++|+.|++++|+|+  
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--  192 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD--  192 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee--
Confidence            888888888877888889999999999999988888999999999999999999999988999999999999999999  


Q ss_pred             CcccccCCCCCC-ccccccccccc
Q psy8879         377 PECIYVGFNTMD-LELIYSGVWRH  399 (694)
Q Consensus       377 ~~~~f~~~NpCd-C~l~~~~~wl~  399 (694)
                                |+ |++.|+..|+.
T Consensus       193 ----------c~~~~~~~l~~~~~  206 (251)
T 3m19_A          193 ----------CSRCEILYLSQWIR  206 (251)
T ss_dssp             ----------TTSTTHHHHHHHHH
T ss_pred             ----------CCccccHHHHHHHH
Confidence                      99 99999999996

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1.1e-22  Score=227.04  Aligned_cols=246  Identities=26%  Similarity=0.321  Sum_probs=144.2

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      .|+.|++++|.++.+|..+   .+|++|++++|.++.++.     .+.+|++|++++|.++++|  .+.++ ++|++|++
T Consensus        92 ~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~~n~l~~lp--~~~~l-~~L~~L~l  160 (454)
T 1jl5_A           92 HLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLEKLP--ELQNS-SFLKIIDV  160 (454)
T ss_dssp             TCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCCSSCC--CCTTC-TTCCEEEC
T ss_pred             CCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccC-----CCCCCCEEECcCCCCCCCc--ccCCC-CCCCEEEC
Confidence            6667777777776666432   456666666666665542     1234666666666666655  25666 66666666


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      ++|++++++.    ..++|++|++++|++++++  .|..+++|++|++++|++++ +|..   .++|++|++++|.+.+ 
T Consensus       161 ~~N~l~~lp~----~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~-  229 (454)
T 1jl5_A          161 DNNSLKKLPD----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEE-  229 (454)
T ss_dssp             CSSCCSCCCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSS-
T ss_pred             CCCcCcccCC----CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCc-
Confidence            6666665542    1235666666666666643  25666666666666666553 2221   1355555555555552 


Q ss_pred             CCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchh---------------h-hccccccccc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHS---------------F-RALSTLSHLD  319 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~---------------f-~~l~~L~~L~  319 (694)
                      + | .+..+++|++|++++|++++++.    .+++|++|++++|+++.++...               + .-.++|+.|+
T Consensus       230 l-p-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~  303 (454)
T 1jl5_A          230 L-P-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN  303 (454)
T ss_dssp             C-C-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEE
T ss_pred             c-c-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEE
Confidence            3 2 25555555555555555555432    1244444555544444433210               0 0014555556


Q ss_pred             CCCCccccccccchhcc-cccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         320 LAHNRIVAVSGASLAHL-SNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       320 Ls~N~L~~i~~~~f~~l-~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      +++|+++++.     .+ ++|+.|++++|++++++..    +++|+.|++++|+++.+|.
T Consensus       304 l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~  354 (454)
T 1jl5_A          304 ASSNEIRSLC-----DLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE  354 (454)
T ss_dssp             CCSSCCSEEC-----CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC
T ss_pred             CcCCcCCccc-----CCcCcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc
Confidence            6666555542     22 5899999999999987653    6899999999999999887

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=7.8e-24  Score=244.73  Aligned_cols=226  Identities=28%  Similarity=0.258  Sum_probs=195.2

Q ss_pred             CCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          95 ERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      .+|+.|++++|.++.+|.   .+++|++|++++|.++.++.     .+.+|+.|++++|.++.+|..    + ++|++|+
T Consensus        81 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~----l-~~L~~L~  147 (622)
T 3g06_A           81 PELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPVL----P-PGLQELS  147 (622)
T ss_dssp             TTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCCC----C-TTCCEEE
T ss_pred             CCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCCC----C-CCCCEEE
Confidence            489999999999999987   66899999999999999876     346799999999999999873    3 8999999


Q ss_pred             ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC
Q psy8879         175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG  254 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~  254 (694)
                      |++|++++++.    .+++|+.|++++|.++.++    ..+++|+.|++++|++++ +|.   .+++|+.|++++|.+..
T Consensus       148 Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~  215 (622)
T 3g06_A          148 VSDNQLASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS  215 (622)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS
T ss_pred             CcCCcCCCcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc
Confidence            99999998864    4578999999999999987    456899999999999986 333   34789999999999985


Q ss_pred             CCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879         255 PLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA  334 (694)
Q Consensus       255 ~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~  334 (694)
                       + +.   .+++|+.|++++|.+++++    ..+++|++|+|++|+|+.++.    .+++|+.|+|++|+|+.+ |..+.
T Consensus       216 -l-~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~  281 (622)
T 3g06_A          216 -L-PA---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLI  281 (622)
T ss_dssp             -C-CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGG
T ss_pred             -c-CC---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHh
Confidence             4 33   2478999999999999976    456899999999999998886    568999999999999987 56699


Q ss_pred             cccccCeeecCCCCCCCcChhhhCC
Q psy8879         335 HLSNLTTLDLSHNFLRALTQDLITP  359 (694)
Q Consensus       335 ~l~~L~~L~Ls~N~L~~l~~~~~~~  359 (694)
                      ++++|+.|+|++|.+++..+..+..
T Consensus       282 ~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          282 HLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             GSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             hccccCEEEecCCCCCCcCHHHHHh
Confidence            9999999999999999877765543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.89  E-value=2.5e-23  Score=224.07  Aligned_cols=237  Identities=22%  Similarity=0.308  Sum_probs=164.7

Q ss_pred             EEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCC-CCCccccccCCCCccE-EEccC
Q psy8879         100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLS-VVPTSALAPLAPNLDR-LDLSH  177 (694)
Q Consensus       100 Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~-~lp~~~~~~l~~~L~~-L~Ls~  177 (694)
                      ++|++++++.+|..+.  .++++|+|++|+|+.|+.++|.++.. |++|+|++|.+. .++..+|.++ ++|++ +.+++
T Consensus        14 v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~-L~~L~Ls~N~i~~~i~~~~f~~L-~~l~~~l~~~~   89 (350)
T 4ay9_X           14 FLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKA   89 (350)
T ss_dssp             EEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTT-CCEEEEECCTTCCEECTTSBCSC-TTCCEEEEEEE
T ss_pred             EEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCC-CCEEECcCCCCCCccChhHhhcc-hhhhhhhcccC
Confidence            5566777888887663  46777777777777777777766554 777777777753 3666666666 55543 55556


Q ss_pred             CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccC-CcccchhhhhhccCcccccccCCCCcCCCCC
Q psy8879         178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQG-NRLTVSVVAALQGLRSVTDLDLSHNLLAGPL  256 (694)
Q Consensus       178 N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i  256 (694)
                      |+++.+++..|.++++|++|++++|++..+++..+....++..|++.+ +++..                         +
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-------------------------l  144 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-------------------------I  144 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-------------------------E
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc-------------------------c
Confidence            677777666777777777777777777766665555555555565543 23332                         3


Q ss_pred             CCCCCCCcc-ccceeeccCCcccccccccccCCcccceeccc-CCccccccchhhhcccccccccCCCCccccccccchh
Q psy8879         257 GPSTVPRLS-SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH-HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA  334 (694)
Q Consensus       257 ~p~~~~~l~-~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls-~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~  334 (694)
                      ++..|..+. .++.|+|++|+++.+++..|. ..+|++|++. +|.++.++..+|.++++|+.|+|++|+|+.+++..|.
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~  223 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE  223 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred             cccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence            233444443 577888888888888777664 4678888886 4788888888899999999999999999998877766


Q ss_pred             cccccCeeecCCCCCCCcChhhhCCCCCCCEEEccC
Q psy8879         335 HLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD  370 (694)
Q Consensus       335 ~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~  370 (694)
                      ++++|+.+++  +.++.+|+  +..+++|+.+++.+
T Consensus       224 ~L~~L~~l~~--~~l~~lP~--l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          224 NLKKLRARST--YNLKKLPT--LEKLVALMEASLTY  255 (350)
T ss_dssp             TCCEEECTTC--TTCCCCCC--TTTCCSCCEEECSC
T ss_pred             cchHhhhccC--CCcCcCCC--chhCcChhhCcCCC
Confidence            6665555443  45777775  77899999999874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.89  E-value=1.5e-23  Score=225.73  Aligned_cols=223  Identities=19%  Similarity=0.269  Sum_probs=148.7

Q ss_pred             EEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCC-CCccccCCCCCCcE-Eecc
Q psy8879         147 ALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT-LSQDCLAPLVTLRV-LRLQ  224 (694)
Q Consensus       147 ~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~-i~~~~f~~L~~L~~-L~Ls  224 (694)
                      +++.++++++++|...    ++++++|+|++|+|+.+++.+|.++++|++|+|++|++.+ +++++|.+++++++ +.+.
T Consensus        13 ~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            3444444555554421    1345555555555555555555555555555555555432 34444555555443 3344


Q ss_pred             CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccC-CcccccccccccCCc-ccceecccCCccc
Q psy8879         225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAH-NQFSSVRRGALAGLD-KLTSLSCHHNQID  302 (694)
Q Consensus       225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~-N~L~~i~~~~~~~L~-~L~~L~Ls~N~L~  302 (694)
                      .|+++...+..|.++++|++|++++|.+.+ +++..+....++..|++.+ +.+..+++..|.++. .++.|+|++|+|+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            455555555555555556666666665554 3344455566778888855 688889888888876 6899999999999


Q ss_pred             cccchhhhcccccccccCC-CCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccC-CCCCCCCc
Q psy8879         303 VLEDHSFRALSTLSHLDLA-HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD-NDISMEPE  378 (694)
Q Consensus       303 ~i~~~~f~~l~~L~~L~Ls-~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~-N~L~~l~~  378 (694)
                      .++...|.. .+|+.|+++ +|.++.+++..|.++++|+.|||++|+|+.+++..+.   +|+.|.+.+ +.++.+|.
T Consensus       168 ~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          168 EIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             EECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC
T ss_pred             CCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC
Confidence            999888764 679999997 5889999999999999999999999999999987655   566666543 46777775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.89  E-value=8.5e-25  Score=242.75  Aligned_cols=280  Identities=21%  Similarity=0.151  Sum_probs=175.6

Q ss_pred             CeeEEEcCCCCCC-----CCCccccCCCCccEEEccCCCCCCCCcchhcC----CCCCccEEEccCCCCCCCC----ccc
Q psy8879          96 RVSLLDCTLSNVT-----VLPGKFLEGVTLHGLVISSGELKNISDGAFIG----LSSPLQALGLPNNLLSVVP----TSA  162 (694)
Q Consensus        96 ~L~~Ldls~n~l~-----~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~----l~~~L~~L~Ls~N~L~~lp----~~~  162 (694)
                      +|+.|++++|+++     .++..+..+++|++|++++|.+.......+..    ...+|++|++++|.++...    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            4677777777765     34566666677777777777665433332221    1224777777777766533    233


Q ss_pred             cccCCCCccEEEccCCCCCCCCccccc-----CCCCccEEEecCCCCCCCC----ccccCCCCCCcEEeccCCcccchh-
Q psy8879         163 LAPLAPNLDRLDLSHNQLYKLENTSFK-----GLSSLNFLDLSYNKLMTLS----QDCLAPLVTLRVLRLQGNRLTVSV-  232 (694)
Q Consensus       163 ~~~l~~~L~~L~Ls~N~L~~i~~~~f~-----~L~~L~~L~Ls~N~l~~i~----~~~f~~L~~L~~L~Ls~N~l~~~~-  232 (694)
                      +..+ ++|++|++++|.++......+.     ..++|++|++++|.++...    +..+..+++|++|++++|+++... 
T Consensus       166 l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          166 LRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HhhC-CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            4455 6777777777776554333332     2457777777777776642    344556677777777777776432 


Q ss_pred             ----hhhhccCcccccccCCCCcCCCC----CCCCCCCCccccceeeccCCccccccccccc-----CCcccceecccCC
Q psy8879         233 ----VAALQGLRSVTDLDLSHNLLAGP----LGPSTVPRLSSLKVLSIAHNQFSSVRRGALA-----GLDKLTSLSCHHN  299 (694)
Q Consensus       233 ----~~~~~~L~~L~~L~Ls~N~l~~~----i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~-----~L~~L~~L~Ls~N  299 (694)
                          +..+..+++|++|++++|.+++.    + +..+..+++|++|++++|.+++.....+.     ..++|++|++++|
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDL-CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH-HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCHHHHHHH-HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence                22233467777777777776641    1 33345567777788877777654333222     2257788888888


Q ss_pred             cccccc----chhhhcccccccccCCCCccccccccchhc-----ccccCeeecCCCCCCC----cChhhhCCCCCCCEE
Q psy8879         300 QIDVLE----DHSFRALSTLSHLDLAHNRIVAVSGASLAH-----LSNLTTLDLSHNFLRA----LTQDLITPLKSLQEL  366 (694)
Q Consensus       300 ~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~-----l~~L~~L~Ls~N~L~~----l~~~~~~~l~~L~~L  366 (694)
                      .++...    +..+..+++|+.|++++|++++..+..+..     .++|+.|+|++|++++    ..+..+..+++|++|
T Consensus       324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  403 (461)
T 1z7x_W          324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  403 (461)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence            776553    234556678888888888887765554443     5688888888888874    334456667888888


Q ss_pred             EccCCCCCCCC
Q psy8879         367 RLDDNDISMEP  377 (694)
Q Consensus       367 ~Ls~N~L~~l~  377 (694)
                      ++++|+++...
T Consensus       404 ~l~~N~i~~~~  414 (461)
T 1z7x_W          404 DLSNNCLGDAG  414 (461)
T ss_dssp             ECCSSSCCHHH
T ss_pred             ECCCCCCCHHH
Confidence            88888877543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=7.9e-23  Score=212.19  Aligned_cols=174  Identities=28%  Similarity=0.392  Sum_probs=75.4

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ  224 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls  224 (694)
                      |+.|++++|.++.++.  +..+ ++|++|++++|.+++++  .+.++++|++|++++|.++++++..|..+++|++|+++
T Consensus        43 L~~L~l~~~~i~~~~~--l~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           43 IDQIIANNSDIKSVQG--IQYL-PNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             CCEEECTTSCCCCCTT--GGGC-TTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             eeeeeeCCCCcccccc--cccC-CCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            4444444444444332  3334 44444444444444432  34444444444444444444444444444444444444


Q ss_pred             CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879         225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL  304 (694)
Q Consensus       225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i  304 (694)
                      +|++++..+..|..+++|++|++++|.+.+ +++..+..+++|+.|++++|.++++++..|.++++|++|++++|+++.+
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            444443333334444444444444444432 2233334444444444444444444433334444444444444444444


Q ss_pred             cchhhhcccccccccCCCCc
Q psy8879         305 EDHSFRALSTLSHLDLAHNR  324 (694)
Q Consensus       305 ~~~~f~~l~~L~~L~Ls~N~  324 (694)
                      ++..|..+++|+.|++++|.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSC
T ss_pred             CHHHHhCCcCCCEEEccCCC
Confidence            43333444444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.6e-22  Score=212.39  Aligned_cols=197  Identities=25%  Similarity=0.265  Sum_probs=110.5

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ  224 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls  224 (694)
                      ++++++++|.++.+|....    +++++|+|++|.++.+.+..|.++++|++|+|++|.++++++.  ..+++|++|+++
T Consensus        12 l~~l~~~~~~l~~ip~~~~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G           12 HLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             CCEEECTTSCCSSCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             ccEEECCCCCCCcCCCCCC----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence            4555555555555444211    3455555555555555444555555555555555555544332  445555555555


Q ss_pred             CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879         225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL  304 (694)
Q Consensus       225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i  304 (694)
                      +|+++ .+|..+..+++|++|++++|++++ +++..|..+++|++|+|++|+++++++..|..+++|++|+|++|+|+.+
T Consensus        86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCcCC-cCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            55554 334445555555555555555554 3345566666666666666666666665566666666666666666666


Q ss_pred             cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCC
Q psy8879         305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR  350 (694)
Q Consensus       305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~  350 (694)
                      ++..|..+++|+.|+|++|+++.++.. +..+.+|+.|+|++|.+.
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBC
T ss_pred             CHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCcc
Confidence            666666666666666666666655433 334456666677666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=2.5e-24  Score=239.00  Aligned_cols=277  Identities=22%  Similarity=0.232  Sum_probs=145.0

Q ss_pred             CeeEEEcCCCCCC-----CCCccccCCCCccEEEccCCCCCCCCcchhcCCCC----CccEEEccCCCCCCCC----ccc
Q psy8879          96 RVSLLDCTLSNVT-----VLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSS----PLQALGLPNNLLSVVP----TSA  162 (694)
Q Consensus        96 ~L~~Ldls~n~l~-----~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~----~L~~L~Ls~N~L~~lp----~~~  162 (694)
                      .|+.|++++|+++     .++..+..+++|++|++++|.+.......+.....    +|++|++++|.++...    +..
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  108 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  108 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence            5666666666665     34555566666777777666665543333333222    4667777776666321    334


Q ss_pred             cccCCCCccEEEccCCCCCCCCccc-----ccCCCCccEEEecCCCCCCCC----ccccCCCCCCcEEeccCCcccchhh
Q psy8879         163 LAPLAPNLDRLDLSHNQLYKLENTS-----FKGLSSLNFLDLSYNKLMTLS----QDCLAPLVTLRVLRLQGNRLTVSVV  233 (694)
Q Consensus       163 ~~~l~~~L~~L~Ls~N~L~~i~~~~-----f~~L~~L~~L~Ls~N~l~~i~----~~~f~~L~~L~~L~Ls~N~l~~~~~  233 (694)
                      +..+ ++|++|+|++|.++......     +...++|++|++++|+++...    +..+..+++|++|++++|.+....+
T Consensus       109 l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  187 (461)
T 1z7x_W          109 LRTL-PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  187 (461)
T ss_dssp             TTSC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HccC-CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence            5555 66667777666665432222     122445666666666666543    2334455666666666666654433


Q ss_pred             hhhc-----cCcccccccCCCCcCCCC----CCCCCCCCccccceeeccCCcccccc-----cccccCCcccceecccCC
Q psy8879         234 AALQ-----GLRSVTDLDLSHNLLAGP----LGPSTVPRLSSLKVLSIAHNQFSSVR-----RGALAGLDKLTSLSCHHN  299 (694)
Q Consensus       234 ~~~~-----~L~~L~~L~Ls~N~l~~~----i~p~~~~~l~~L~~L~Ls~N~L~~i~-----~~~~~~L~~L~~L~Ls~N  299 (694)
                      ..+.     ..++|++|++++|.+.+.    + +..+..+++|++|++++|.+++..     +..+..+++|++|++++|
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH-HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHH-HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            3332     234666666666665531    1 223344556666666666555432     222224556666666666


Q ss_pred             cccccc----chhhhcccccccccCCCCccccccccchhcc-----cccCeeecCCCCCCCcC----hhhhCCCCCCCEE
Q psy8879         300 QIDVLE----DHSFRALSTLSHLDLAHNRIVAVSGASLAHL-----SNLTTLDLSHNFLRALT----QDLITPLKSLQEL  366 (694)
Q Consensus       300 ~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l-----~~L~~L~Ls~N~L~~l~----~~~~~~l~~L~~L  366 (694)
                      .++...    +..+..+++|+.|++++|.+++..+..+...     ++|+.|+|++|.+++..    +..+..+++|+.|
T Consensus       267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  346 (461)
T 1z7x_W          267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL  346 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred             CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence            555421    2234445566666666665554433333222     45555555555555432    2223344555555


Q ss_pred             EccCCCCC
Q psy8879         367 RLDDNDIS  374 (694)
Q Consensus       367 ~Ls~N~L~  374 (694)
                      ++++|+++
T Consensus       347 ~Ls~n~i~  354 (461)
T 1z7x_W          347 QISNNRLE  354 (461)
T ss_dssp             ECCSSBCH
T ss_pred             EccCCccc
Confidence            55555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=9e-23  Score=211.79  Aligned_cols=227  Identities=27%  Similarity=0.293  Sum_probs=185.3

Q ss_pred             eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879          97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS  176 (694)
Q Consensus        97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls  176 (694)
                      +..+++..+.+.... ....+.+|+.|++++|.++.++.  +..+ ++|++|++++|.++.++  .+..+ ++|++|+|+
T Consensus        21 l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~--l~~l-~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~L~   93 (272)
T 3rfs_A           21 TIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG--IQYL-PNVRYLALGGNKLHDIS--ALKEL-TNLTYLILT   93 (272)
T ss_dssp             HHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCTT--GGGC-TTCCEEECTTSCCCCCG--GGTTC-TTCCEEECT
T ss_pred             HHHHHhcCccccccc-ccccccceeeeeeCCCCcccccc--cccC-CCCcEEECCCCCCCCch--hhcCC-CCCCEEECC
Confidence            334455555554442 34456788899999988887753  4443 45999999999998875  47788 899999999


Q ss_pred             CCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCC
Q psy8879         177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL  256 (694)
Q Consensus       177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i  256 (694)
                      +|.++++++..|.++++|++|++++|+++++++..|..+++|++|++++|++++..+..|..+++|++|++++|++.+ +
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~  172 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-L  172 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-C
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-c
Confidence            999999888888899999999999999999988888899999999999999988777788889999999999999986 5


Q ss_pred             CCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879         257 GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL  336 (694)
Q Consensus       257 ~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l  336 (694)
                      ++..+..+++|+.|++++|.++++++..+..+++|++|++++|.+..       .+++|+.|+++.|.+++..|..++.+
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence            56778889999999999999999988888899999999999998753       35678888888898888877776655


Q ss_pred             cc
Q psy8879         337 SN  338 (694)
Q Consensus       337 ~~  338 (694)
                      +.
T Consensus       246 ~~  247 (272)
T 3rfs_A          246 AP  247 (272)
T ss_dssp             CG
T ss_pred             CC
Confidence            43

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=2.1e-22  Score=213.08  Aligned_cols=192  Identities=29%  Similarity=0.400  Sum_probs=113.6

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ  224 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls  224 (694)
                      |++|++++|.++.++.  +..+ ++|++|+|++|.++.+++  +.++++|++|++++|++++++  .+..+++|++|+++
T Consensus        43 L~~L~l~~~~i~~l~~--~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           43 ITTLSAFGTGVTTIEG--VQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (308)
T ss_dssp             CCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             cCEEEeeCCCccCchh--hhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence            5556666655555542  4445 555556665555555544  555555555555555555542  24555555555555


Q ss_pred             CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879         225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL  304 (694)
Q Consensus       225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i  304 (694)
                      +|++++..                           .+..+++|++|++++|.++++++  +.++++|++|++++|.++.+
T Consensus       116 ~n~l~~~~---------------------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  166 (308)
T 1h6u_A          116 STQITDVT---------------------------PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL  166 (308)
T ss_dssp             TSCCCCCG---------------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCch---------------------------hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence            55544321                           14445555555555555555543  55566666666666666655


Q ss_pred             cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      ++  +..+++|+.|++++|+++++++  +..+++|+.|+|++|+++++++  +..+++|+.|++++|+++..|.
T Consensus       167 ~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence            54  5666666777777776666654  5666777777777777776664  6667777777777777764443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=7.9e-23  Score=216.15  Aligned_cols=230  Identities=18%  Similarity=0.135  Sum_probs=133.4

Q ss_pred             CCccEEEccCCCCCCCCcc---hhcCCCCCccEEEccCCCCCCCCcccc--ccCCCCccEEEccCCCCCCCCc----ccc
Q psy8879         118 VTLHGLVISSGELKNISDG---AFIGLSSPLQALGLPNNLLSVVPTSAL--APLAPNLDRLDLSHNQLYKLEN----TSF  188 (694)
Q Consensus       118 ~~L~~L~Ls~n~i~~i~~~---~F~~l~~~L~~L~Ls~N~L~~lp~~~~--~~l~~~L~~L~Ls~N~L~~i~~----~~f  188 (694)
                      ..++.+.+.++.+......   .+... .+|++|++++|.+++..+..+  ..+ ++|++|+|++|.+++..+    ..+
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHh
Confidence            4466666666655421111   01112 236666666666665544444  555 666666666666654322    233


Q ss_pred             cCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccc
Q psy8879         189 KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK  268 (694)
Q Consensus       189 ~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~  268 (694)
                      ..+++|++|++++|++.++++..|..+++|++|++++|++.+...                     ...+..+..+++|+
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------------~~~~~~~~~l~~L~  200 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG---------------------LMAALCPHKFPAIQ  200 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH---------------------HHTTSCTTSSCCCC
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh---------------------hhHHHhhhcCCCCC
Confidence            455666666666666666666666666666666666666543210                     00011223455556


Q ss_pred             eeeccCCcccccccc---cccCCcccceecccCCccccccchhhhcc---cccccccCCCCccccccccchhcccccCee
Q psy8879         269 VLSIAHNQFSSVRRG---ALAGLDKLTSLSCHHNQIDVLEDHSFRAL---STLSHLDLAHNRIVAVSGASLAHLSNLTTL  342 (694)
Q Consensus       269 ~L~Ls~N~L~~i~~~---~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l---~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L  342 (694)
                      +|+|++|+++.++..   .+.++++|++|+|++|+++...+..+..+   ++|++|+|++|+++.++... .  ++|+.|
T Consensus       201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~--~~L~~L  277 (310)
T 4glp_A          201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P--AKLRVL  277 (310)
T ss_dssp             SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C--SCCSCE
T ss_pred             EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-c--CCCCEE
Confidence            666666665543321   23556677777777777766644344444   57777778777777664433 2  688888


Q ss_pred             ecCCCCCCCcChhhhCCCCCCCEEEccCCCCCC
Q psy8879         343 DLSHNFLRALTQDLITPLKSLQELRLDDNDISM  375 (694)
Q Consensus       343 ~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~  375 (694)
                      +|++|++++++.  +..+++|+.|++++|+|+.
T Consensus       278 ~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          278 DLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred             ECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence            888888887754  5677888888888888863

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=2.1e-22  Score=202.83  Aligned_cols=165  Identities=25%  Similarity=0.388  Sum_probs=135.9

Q ss_pred             ccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccC
Q psy8879         241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL  320 (694)
Q Consensus       241 ~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~L  320 (694)
                      +|+.|++++|.+.+ +++..|..+++|+.|+|++|+++.+.+..|.++++|++|+|++|.|+.+++..|.++++|+.|+|
T Consensus        33 ~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           33 TITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            45555555555553 33556777778888888888888887778888888888888888888888888888999999999


Q ss_pred             CCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccc
Q psy8879         321 AHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHS  400 (694)
Q Consensus       321 s~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~  400 (694)
                      ++|+|+++.+..|..+++|+.|+|++|+++++++..+..+++|+.|+|++|+|.            |||++.|+..|+..
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------------c~c~l~~l~~~l~~  179 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI------------CDCHLKWLADYLHT  179 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE------------CSGGGHHHHHHHHH
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC------------CCCccHHHHHHHHh
Confidence            999999998899999999999999999999999999999999999999999999            99999999999874


Q ss_pred             cccCCccCccccCCcccce
Q psy8879         401 TLLIPVMLSLCTRSSVVTR  419 (694)
Q Consensus       401 ~~~~~~~~~~C~~~~~~~~  419 (694)
                      .. .....+.|..|...++
T Consensus       180 ~~-~~~~~~~C~~P~~l~g  197 (220)
T 2v9t_B          180 NP-IETSGARCTSPRRLAN  197 (220)
T ss_dssp             CC-CBCSCCBEEESGGGTT
T ss_pred             CC-CCccCCCcCCchHHcC
Confidence            33 2335678887655443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.8e-21  Score=205.94  Aligned_cols=208  Identities=28%  Similarity=0.350  Sum_probs=147.0

Q ss_pred             cCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCC
Q psy8879         102 CTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLY  181 (694)
Q Consensus       102 ls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~  181 (694)
                      +..+.+..+. ....+++|++|++++|.++.++  .|..+ ++|++|++++|.++.+++  +..+ ++|++|+|++|.++
T Consensus        26 l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~--~~~~l-~~L~~L~L~~n~i~~~~~--~~~l-~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           26 AGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE--GVQYL-NNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLK   98 (308)
T ss_dssp             TTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCS
T ss_pred             hCCCCcCcee-cHHHcCCcCEEEeeCCCccCch--hhhcc-CCCCEEEccCCcCCCChh--HccC-CCCCEEEccCCcCC
Confidence            3444444321 2345678999999999999986  35554 469999999999999987  8888 99999999999999


Q ss_pred             CCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCC
Q psy8879         182 KLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV  261 (694)
Q Consensus       182 ~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~  261 (694)
                      .++  .+.++++|++|++++|+++++++  +..+++|++|++++|++++..+  +..+++|++|++++|.+.+ +++  +
T Consensus        99 ~~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l  169 (308)
T 1h6u_A           99 NVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--L  169 (308)
T ss_dssp             CCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--G
T ss_pred             Cch--hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh--h
Confidence            885  58999999999999999999864  8999999999999999886443  6666666666666666654 211  5


Q ss_pred             CCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCe
Q psy8879         262 PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTT  341 (694)
Q Consensus       262 ~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~  341 (694)
                      ..+++|+.|++++|.++++++                          +..+++|+.|++++|+++++.+  +..+++|+.
T Consensus       170 ~~l~~L~~L~l~~n~l~~~~~--------------------------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  221 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISDISP--------------------------LASLPNLIEVHLKNNQISDVSP--LANTSNLFI  221 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccCcChh--------------------------hcCCCCCCEEEccCCccCcccc--ccCCCCCCE
Confidence            555555555555555554432                          3444555555555555555432  445555555


Q ss_pred             eecCCCCCCCcC
Q psy8879         342 LDLSHNFLRALT  353 (694)
Q Consensus       342 L~Ls~N~L~~l~  353 (694)
                      |+|++|.+++.+
T Consensus       222 L~l~~N~i~~~~  233 (308)
T 1h6u_A          222 VTLTNQTITNQP  233 (308)
T ss_dssp             EEEEEEEEECCC
T ss_pred             EEccCCeeecCC
Confidence            555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=3.8e-23  Score=223.49  Aligned_cols=256  Identities=21%  Similarity=0.241  Sum_probs=129.9

Q ss_pred             EEcCCCCCCCCCccccCCCC-ccEEEccCCCCCCCCc----chhcCCCCCccEEEccCCCCCCCCccccccC----CCCc
Q psy8879         100 LDCTLSNVTVLPGKFLEGVT-LHGLVISSGELKNISD----GAFIGLSSPLQALGLPNNLLSVVPTSALAPL----APNL  170 (694)
Q Consensus       100 Ldls~n~l~~lp~~~~~~~~-L~~L~Ls~n~i~~i~~----~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l----~~~L  170 (694)
                      ++++.|+++...+.+...+. |++|++++|.++.++.    .+|.++..+|++|+|++|.++......+..+    +++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            44555555543333333332 5555555555555544    3344333235555555555544443333321    1344


Q ss_pred             cEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCC-CCCcEEeccCCcccchhhhhhc----c-Cccccc
Q psy8879         171 DRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPL-VTLRVLRLQGNRLTVSVVAALQ----G-LRSVTD  244 (694)
Q Consensus       171 ~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~~~~~~----~-L~~L~~  244 (694)
                      ++|+|++|.++...+..+..                    .+..+ ++|++|++++|++++..+..+.    . .++|++
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  142 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS  142 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred             cEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence            44444444444433322111                    12222 4455555555554443332222    2 134555


Q ss_pred             ccCCCCcCCCCCC---CCCCCCcc-ccceeeccCCccccccccc----ccCC-cccceecccCCccccccch----hhhc
Q psy8879         245 LDLSHNLLAGPLG---PSTVPRLS-SLKVLSIAHNQFSSVRRGA----LAGL-DKLTSLSCHHNQIDVLEDH----SFRA  311 (694)
Q Consensus       245 L~Ls~N~l~~~i~---p~~~~~l~-~L~~L~Ls~N~L~~i~~~~----~~~L-~~L~~L~Ls~N~L~~i~~~----~f~~  311 (694)
                      |++++|.+.+...   +..+..++ +|++|+|++|++++..+..    +..+ ++|++|+|++|.|+.....    .+..
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence            5555555442100   01112222 5666666666666554432    2333 4777777777777653222    3333


Q ss_pred             -ccccccccCCCCcccccccc----chhcccccCeeecCCCCCCCcChh-------hhCCCCCCCEEEccCCCCCC
Q psy8879         312 -LSTLSHLDLAHNRIVAVSGA----SLAHLSNLTTLDLSHNFLRALTQD-------LITPLKSLQELRLDDNDISM  375 (694)
Q Consensus       312 -l~~L~~L~Ls~N~L~~i~~~----~f~~l~~L~~L~Ls~N~L~~l~~~-------~~~~l~~L~~L~Ls~N~L~~  375 (694)
                       .++|+.|+|++|++++....    .+..+++|+.|+|++|.+.++.+.       .+..+++|+.||+++|++..
T Consensus       223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence             34788888888877776553    335567788888888886665543       45567778888888888763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=6.9e-22  Score=199.00  Aligned_cols=164  Identities=21%  Similarity=0.371  Sum_probs=136.9

Q ss_pred             cccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCC
Q psy8879         242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA  321 (694)
Q Consensus       242 L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls  321 (694)
                      +++|++++|.+.+..++..|..+++|+.|+|++|.++++++..|.++++|++|+|++|.++.+++..|.++++|++|+|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            34555555555543234557778888888888888888888888899999999999999999998889999999999999


Q ss_pred             CCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccccccccccc
Q psy8879         322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHST  401 (694)
Q Consensus       322 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~  401 (694)
                      +|+|+++.+..|.++++|+.|+|++|+++++++..|..+++|+.|++++|+|.            |+|.+.|+..|+...
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------------c~c~l~~l~~~~~~~  181 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN------------CNCYLAWLGEWLRKK  181 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE------------CSGGGHHHHHHHHHS
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc------------CCCchHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999            999999999999744


Q ss_pred             ccCCccCccccCCcccc
Q psy8879         402 LLIPVMLSLCTRSSVVT  418 (694)
Q Consensus       402 ~~~~~~~~~C~~~~~~~  418 (694)
                      .+. .....|..|...+
T Consensus       182 ~~~-~~~~~C~~P~~l~  197 (220)
T 2v70_A          182 RIV-TGNPRCQKPYFLK  197 (220)
T ss_dssp             CCB-CCCCEEEESGGGT
T ss_pred             Ccc-ccCCccCCChHHC
Confidence            322 3456787765433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=5.2e-22  Score=209.87  Aligned_cols=224  Identities=21%  Similarity=0.245  Sum_probs=158.2

Q ss_pred             CeeEEEcCCCCCCCC--Cc--cccCCCCccEEEccCCCCCCCCcchhc-CCCCCccEEEccCCCCCCCCc----cccccC
Q psy8879          96 RVSLLDCTLSNVTVL--PG--KFLEGVTLHGLVISSGELKNISDGAFI-GLSSPLQALGLPNNLLSVVPT----SALAPL  166 (694)
Q Consensus        96 ~L~~Ldls~n~l~~l--p~--~~~~~~~L~~L~Ls~n~i~~i~~~~F~-~l~~~L~~L~Ls~N~L~~lp~----~~~~~l  166 (694)
                      .++.+.+.+..++.-  ..  .+...++|++|++++|.+....+..|. +...+|++|+|++|.++...+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            567788887776421  11  122346699999999999987776662 444569999999999987433    334456


Q ss_pred             CCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCC---CCc-cccCCCCCCcEEeccCCcccchhh--h-hhccC
Q psy8879         167 APNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT---LSQ-DCLAPLVTLRVLRLQGNRLTVSVV--A-ALQGL  239 (694)
Q Consensus       167 ~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~---i~~-~~f~~L~~L~~L~Ls~N~l~~~~~--~-~~~~L  239 (694)
                       ++|++|+|++|.++.+++..|.++++|++|+|++|++.+   +.+ ..+..+++|++|++++|+++....  . .+..+
T Consensus       145 -~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 -PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             -SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             -cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence             899999999999999999999999999999999999865   322 234678999999999999974322  2 35778


Q ss_pred             cccccccCCCCcCCCCCCCCCCCCc---cccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccc
Q psy8879         240 RSVTDLDLSHNLLAGPLGPSTVPRL---SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLS  316 (694)
Q Consensus       240 ~~L~~L~Ls~N~l~~~i~p~~~~~l---~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~  316 (694)
                      ++|++|++++|.+.+.. |..+..+   ++|++|+|++|+++.++... .  ++|++|+|++|+|+.++.  +..+++|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~  297 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRAPQ--PDELPEVD  297 (310)
T ss_dssp             CCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSCCC--TTSCCCCS
T ss_pred             CCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCCch--hhhCCCcc
Confidence            89999999999988743 4445444   57777777777777664432 1  456666666666655432  34455555


Q ss_pred             cccCCCCccc
Q psy8879         317 HLDLAHNRIV  326 (694)
Q Consensus       317 ~L~Ls~N~L~  326 (694)
                      .|+|++|+++
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            5555555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=7.1e-21  Score=194.94  Aligned_cols=178  Identities=29%  Similarity=0.397  Sum_probs=112.6

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      ..+.++|++++++.+|..+.  .+++.|++++|.+..+....|.++. +|++|+|++|.++.+++..|..+ ++|++|+|
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDL-TELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTC-TTCCEEEC
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcc-cCCEEECCCCcCCccCHhHhccC-CcCCEEEC
Confidence            34568888888888887664  4677777777777777666665554 37777777777776666666666 66777777


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      ++|+++.+++..|.++++|++|+|++|+++++++..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+ 
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc-
Confidence            7777766666666666666666666666666666666666666666666666665444445555555555555555543 


Q ss_pred             CCCCCCCCccccceeeccCCccc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQFS  278 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~L~  278 (694)
                      +++..+..+++|+.|++++|.+.
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCHHHHhCCCCCCEEEeeCCcee
Confidence            22334444455555555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=1.2e-22  Score=219.69  Aligned_cols=234  Identities=23%  Similarity=0.277  Sum_probs=167.3

Q ss_pred             CeeEEEcCCCCCCCCC-----ccccCCC-CccEEEccCCCCCCCCcchhcCC----CCCccEEEccCCCCCCCCcccccc
Q psy8879          96 RVSLLDCTLSNVTVLP-----GKFLEGV-TLHGLVISSGELKNISDGAFIGL----SSPLQALGLPNNLLSVVPTSALAP  165 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp-----~~~~~~~-~L~~L~Ls~n~i~~i~~~~F~~l----~~~L~~L~Ls~N~L~~lp~~~~~~  165 (694)
                      .|+.||+++|.++..+     ..+..++ +|++|++++|.+.......|...    ..+|++|+|++|.++......+..
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            6999999999998876     5667788 89999999999999887777664    356999999999999877653333


Q ss_pred             ----CCCCccEEEccCCCCCCCCcccc----cC-CCCccEEEecCCCCCCCCccc----cCCCC-CCcEEeccCCcccch
Q psy8879         166 ----LAPNLDRLDLSHNQLYKLENTSF----KG-LSSLNFLDLSYNKLMTLSQDC----LAPLV-TLRVLRLQGNRLTVS  231 (694)
Q Consensus       166 ----l~~~L~~L~Ls~N~L~~i~~~~f----~~-L~~L~~L~Ls~N~l~~i~~~~----f~~L~-~L~~L~Ls~N~l~~~  231 (694)
                          ++++|++|+|++|.++......+    .. .++|++|+|++|.+++.....    +..++ +|++|++++|++++.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence                22689999999999988876554    33 368999999999988655433    34555 899999999998876


Q ss_pred             hhhhhc----cC-cccccccCCCCcCCCCCC---CCCCCC-ccccceeeccCCccccccc----ccccCCcccceecccC
Q psy8879         232 VVAALQ----GL-RSVTDLDLSHNLLAGPLG---PSTVPR-LSSLKVLSIAHNQFSSVRR----GALAGLDKLTSLSCHH  298 (694)
Q Consensus       232 ~~~~~~----~L-~~L~~L~Ls~N~l~~~i~---p~~~~~-l~~L~~L~Ls~N~L~~i~~----~~~~~L~~L~~L~Ls~  298 (694)
                      .+..+.    .. ++|++|++++|.+.+.-.   +..+.. .++|++|+|++|.+++...    ..+..+++|++|++++
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence            655443    34 588888888888764100   122222 3477788888887776543    2345567777777777


Q ss_pred             Cccccccch-------hhhcccccccccCCCCcccccc
Q psy8879         299 NQIDVLEDH-------SFRALSTLSHLDLAHNRIVAVS  329 (694)
Q Consensus       299 N~L~~i~~~-------~f~~l~~L~~L~Ls~N~L~~i~  329 (694)
                      |.+..+...       .+..+++|+.||+++|++....
T Consensus       263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred             CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence            775554432       3445556666666666665543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=5.6e-23  Score=223.76  Aligned_cols=258  Identities=20%  Similarity=0.166  Sum_probs=115.5

Q ss_pred             eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcch----hcCCCCCccEEEccCCCCCCCCc---cc-------
Q psy8879          97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGA----FIGLSSPLQALGLPNNLLSVVPT---SA-------  162 (694)
Q Consensus        97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~----F~~l~~~L~~L~Ls~N~L~~lp~---~~-------  162 (694)
                      ++...++...+..++..+..+++|++|++++|.+.......    |.. .++|++|+|++|.+..+..   ..       
T Consensus        11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~   89 (386)
T 2ca6_A           11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQA   89 (386)
T ss_dssp             CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHh-CCCccEEeCcccccCccccchhHHHHHHHHH
Confidence            33333444444455555555666666666666665443322    222 2235555555554433221   11       


Q ss_pred             cccCCCCccEEEccCCCCCCC----CcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhcc
Q psy8879         163 LAPLAPNLDRLDLSHNQLYKL----ENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQG  238 (694)
Q Consensus       163 ~~~l~~~L~~L~Ls~N~L~~i----~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~  238 (694)
                      +..+ ++|++|+|++|.++..    .+..+..+++|++|+|++|.++...+..+..                    .+..
T Consensus        90 l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~  148 (386)
T 2ca6_A           90 LLKC-PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQE  148 (386)
T ss_dssp             HTTC-TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHH
T ss_pred             HhhC-CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHH
Confidence            1333 4555555555554441    2223444455555555555443322222211                    1111


Q ss_pred             C---------cccccccCCCCcCCCCCCC---CCCCCccccceeeccCCcccc-----cccccccCCcccceecccCCcc
Q psy8879         239 L---------RSVTDLDLSHNLLAGPLGP---STVPRLSSLKVLSIAHNQFSS-----VRRGALAGLDKLTSLSCHHNQI  301 (694)
Q Consensus       239 L---------~~L~~L~Ls~N~l~~~i~p---~~~~~l~~L~~L~Ls~N~L~~-----i~~~~~~~L~~L~~L~Ls~N~L  301 (694)
                      +         ++|++|++++|.+.+.-.+   ..+..+++|+.|++++|.++.     +.+..+..+++|++|+|++|.+
T Consensus       149 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence            2         4444444444444310001   122334445555555554441     1222344455555555555555


Q ss_pred             c----cccchhhhcccccccccCCCCcccccc----ccchh--cccccCeeecCCCCCCC-----cChhhhCCCCCCCEE
Q psy8879         302 D----VLEDHSFRALSTLSHLDLAHNRIVAVS----GASLA--HLSNLTTLDLSHNFLRA-----LTQDLITPLKSLQEL  366 (694)
Q Consensus       302 ~----~i~~~~f~~l~~L~~L~Ls~N~L~~i~----~~~f~--~l~~L~~L~Ls~N~L~~-----l~~~~~~~l~~L~~L  366 (694)
                      +    ...+..+..+++|+.|+|++|++++..    +..+.  .+++|+.|+|++|.++.     ++......+++|+.|
T Consensus       229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L  308 (386)
T 2ca6_A          229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL  308 (386)
T ss_dssp             HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred             CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence            3    112224445555555555555555442    22221  25556666666666555     333322445566666


Q ss_pred             EccCCCCCCC
Q psy8879         367 RLDDNDISME  376 (694)
Q Consensus       367 ~Ls~N~L~~l  376 (694)
                      ++++|+++..
T Consensus       309 ~l~~N~l~~~  318 (386)
T 2ca6_A          309 ELNGNRFSEE  318 (386)
T ss_dssp             ECTTSBSCTT
T ss_pred             EccCCcCCcc
Confidence            6666665533

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=2.9e-20  Score=184.59  Aligned_cols=177  Identities=28%  Similarity=0.352  Sum_probs=112.3

Q ss_pred             EEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCC
Q psy8879         100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQ  179 (694)
Q Consensus       100 Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~  179 (694)
                      ++|+.++++.+|..+.  ++|++|++++|.++.++...|.++. +|++|++++|.++.+++..|..+ ++|++|+|++|+
T Consensus        12 v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~   87 (208)
T 2o6s_A           12 VECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKL-TSLTYLNLSTNQ   87 (208)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSC
T ss_pred             EEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChhhcCCC-CCcCEEECCCCc
Confidence            4445555666665442  3667777777777766666555543 37777777777777766666666 677777777777


Q ss_pred             CCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCC
Q psy8879         180 LYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPS  259 (694)
Q Consensus       180 L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~  259 (694)
                      ++.+++..|.++++|++|++++|+++++++..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+.    
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----  163 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----  163 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----
Confidence            7766666666777777777777777766666666667777777777766655555566666666666666655432    


Q ss_pred             CCCCccccceeeccCCcccccccccccCC
Q psy8879         260 TVPRLSSLKVLSIAHNQFSSVRRGALAGL  288 (694)
Q Consensus       260 ~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L  288 (694)
                          +++|+.|+++.|++++..|..+..+
T Consensus       164 ----~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          164 ----CPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             ----TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ----CCCHHHHHHHHHhCCceeeccCccc
Confidence                3455666666666665544444433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=6.1e-22  Score=210.64  Aligned_cols=253  Identities=17%  Similarity=0.151  Sum_probs=170.3

Q ss_pred             ccEEEccCCCCCCCCcchhcCC-CCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCC-CcccccCCCCccEE
Q psy8879         120 LHGLVISSGELKNISDGAFIGL-SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKL-ENTSFKGLSSLNFL  197 (694)
Q Consensus       120 L~~L~Ls~n~i~~i~~~~F~~l-~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i-~~~~f~~L~~L~~L  197 (694)
                      ++.++++++.+.   +..+..+ ..+++.|++++|.+.+.++.. ..+ ++|++|++++|.++.. .+..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            556666666554   2233322 134788888888777766653 355 7888888888877653 44567778888888


Q ss_pred             EecCCCCCCCCccccCCCCCCcEEeccCC-cccch-hhhhhccCcccccccCCCC-cCCCCCCCCCCCCcc-ccceeecc
Q psy8879         198 DLSYNKLMTLSQDCLAPLVTLRVLRLQGN-RLTVS-VVAALQGLRSVTDLDLSHN-LLAGPLGPSTVPRLS-SLKVLSIA  273 (694)
Q Consensus       198 ~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N-~l~~~-~~~~~~~L~~L~~L~Ls~N-~l~~~i~p~~~~~l~-~L~~L~Ls  273 (694)
                      ++++|.+++..+..+..+++|++|++++| .+++. .+..+.++++|++|++++| .+++...+..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            88888877666667777888888888888 56653 5666777888888888888 766421134466677 88888888


Q ss_pred             CC--ccc-ccccccccCCcccceecccCCc-cccccchhhhcccccccccCCCCc-cccccccchhcccccCeeecCCCC
Q psy8879         274 HN--QFS-SVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAHNR-IVAVSGASLAHLSNLTTLDLSHNF  348 (694)
Q Consensus       274 ~N--~L~-~i~~~~~~~L~~L~~L~Ls~N~-L~~i~~~~f~~l~~L~~L~Ls~N~-L~~i~~~~f~~l~~L~~L~Ls~N~  348 (694)
                      +|  .++ ...+..+.++++|++|++++|. ++......+..+++|+.|++++|. +.......+.++++|+.|++++| 
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            88  343 2223456677888888888887 665555577788888888888884 33332335777888888888888 


Q ss_pred             CCCcChhhhCCC-CCCCEEEccCCCCCCCCcccc
Q psy8879         349 LRALTQDLITPL-KSLQELRLDDNDISMEPECIY  381 (694)
Q Consensus       349 L~~l~~~~~~~l-~~L~~L~Ls~N~L~~l~~~~f  381 (694)
                      +.   .+.+..+ .+++.|++++|+++++.+..+
T Consensus       283 i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          283 VP---DGTLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             cC---HHHHHHHHhhCcceEEecccCccccCCcc
Confidence            33   3233323 236666688888886655443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.2e-20  Score=215.83  Aligned_cols=186  Identities=24%  Similarity=0.343  Sum_probs=108.5

Q ss_pred             CccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEE
Q psy8879         119 TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLD  198 (694)
Q Consensus       119 ~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~  198 (694)
                      +|+.|++++|.++.++...+    ++|++|+|++|.|+.+| .   .+ ++|++|+|++|+|++++.  |.+  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~----~~L~~L~Ls~N~l~~ip-~---~l-~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP----PQITVLEITQNALISLP-E---LP-ASLEYLDACDNRLSTLPE--LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC----TTCSEEECCSSCCSCCC-C---CC-TTCCEEECCSSCCSCCCC--CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCccCHhHc----CCCCEEECcCCCCcccc-c---cc-CCCCEEEccCCCCCCcch--hhc--CCCEEE
Confidence            56777777777776655432    44777777777777666 1   23 667777777777776554  443  677777


Q ss_pred             ecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCccc
Q psy8879         199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS  278 (694)
Q Consensus       199 Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~  278 (694)
                      |++|++++++.    .+++|++|++++|++++ +|.   .+++|++|++++|.+.+ + |. +.  ++|+.|+|++|.|+
T Consensus       127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l-p~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          127 VDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L-PE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C-CC-CC--TTCCEEECCSSCCS
T ss_pred             CCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c-ch-hh--CCCCEEECcCCCCC
Confidence            77777766544    45667777777776664 333   34566666666666665 3 33 43  56666666666666


Q ss_pred             ccccccccCCccc-------ceecccCCccccccchhhhcccccccccCCCCccccccccchhc
Q psy8879         279 SVRRGALAGLDKL-------TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH  335 (694)
Q Consensus       279 ~i~~~~~~~L~~L-------~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~  335 (694)
                      .++.  |..  +|       +.|+|++|+|+.++...+ .+++|+.|+|++|++++..|..+..
T Consensus       194 ~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          194 SLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             SCCC--CC----------CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             chhh--HHH--hhhcccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            5544  322  44       555555555555544322 2555555555555555554544443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=1.1e-21  Score=208.59  Aligned_cols=254  Identities=20%  Similarity=0.162  Sum_probs=201.2

Q ss_pred             CeeEEEcCCCCCCCCCccccCC--CCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCC-CccccccCCCCccE
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEG--VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVV-PTSALAPLAPNLDR  172 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~--~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~l-p~~~~~~l~~~L~~  172 (694)
                      .++.+|++++.+.  +..+..+  .+++.|++++|.+.......+ . ..+|++|++++|.++.. .+..+..+ ++|++
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-~-~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-S-PFRVQHMDLSNSVIEVSTLHGILSQC-SKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCC-C-CBCCCEEECTTCEECHHHHHHHHTTB-CCCSE
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhc-c-CCCCCEEEccCCCcCHHHHHHHHhhC-CCCCE
Confidence            4778999998876  4555555  789999999999988876643 3 45699999999998753 34457788 99999


Q ss_pred             EEccCCCCCCCCcccccCCCCccEEEecCC-CCCCC-CccccCCCCCCcEEeccCC-cccch-hhhhhccCc-ccccccC
Q psy8879         173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYN-KLMTL-SQDCLAPLVTLRVLRLQGN-RLTVS-VVAALQGLR-SVTDLDL  247 (694)
Q Consensus       173 L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N-~l~~i-~~~~f~~L~~L~~L~Ls~N-~l~~~-~~~~~~~L~-~L~~L~L  247 (694)
                      |+|++|.++...+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            999999988777778889999999999999 67753 3455788999999999999 88865 577788999 9999999


Q ss_pred             CCCc--CC-CCCCCCCCCCccccceeeccCCc-ccccccccccCCcccceecccCCc-cccccchhhhcccccccccCCC
Q psy8879         248 SHNL--LA-GPLGPSTVPRLSSLKVLSIAHNQ-FSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRALSTLSHLDLAH  322 (694)
Q Consensus       248 s~N~--l~-~~i~p~~~~~l~~L~~L~Ls~N~-L~~i~~~~~~~L~~L~~L~Ls~N~-L~~i~~~~f~~l~~L~~L~Ls~  322 (694)
                      ++|.  ++ +.+ +..+..+++|+.|++++|. +++..+..+.++++|++|++++|. +.......+..+++|+.|++++
T Consensus       203 ~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          203 SGYRKNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             CSCGGGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             CCCcccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            9994  44 122 4456778999999999999 776666678899999999999995 3333233678899999999999


Q ss_pred             Cccccccccchhcc-cccCeeecCCCCCCCcChhhhCC
Q psy8879         323 NRIVAVSGASLAHL-SNLTTLDLSHNFLRALTQDLITP  359 (694)
Q Consensus       323 N~L~~i~~~~f~~l-~~L~~L~Ls~N~L~~l~~~~~~~  359 (694)
                      |    ++...+..+ ..|..|++++|++++..+..++.
T Consensus       282 ~----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          282 I----VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             S----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             c----cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence            9    444445555 35888889999999988766553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1.6e-21  Score=212.21  Aligned_cols=216  Identities=20%  Similarity=0.206  Sum_probs=150.0

Q ss_pred             cccCCCCccEEEccCCCCCCCCcc----cccCCCCccEEEecCCCCCCC---Cccc-------cCCCCCCcEEeccCCcc
Q psy8879         163 LAPLAPNLDRLDLSHNQLYKLENT----SFKGLSSLNFLDLSYNKLMTL---SQDC-------LAPLVTLRVLRLQGNRL  228 (694)
Q Consensus       163 ~~~l~~~L~~L~Ls~N~L~~i~~~----~f~~L~~L~~L~Ls~N~l~~i---~~~~-------f~~L~~L~~L~Ls~N~l  228 (694)
                      +..+ ++|++|+|++|.++...+.    .|..+++|++|+|++|.+..+   .|..       |..+++|++|+|++|.+
T Consensus        28 l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           28 LLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HhcC-CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            4444 5666666666666554322    245566666666666544322   2222       35667777777777777


Q ss_pred             cc----hhhhhhccCcccccccCCCCcCCCCCCCCC----CCCc---------cccceeeccCCccccc-cc---ccccC
Q psy8879         229 TV----SVVAALQGLRSVTDLDLSHNLLAGPLGPST----VPRL---------SSLKVLSIAHNQFSSV-RR---GALAG  287 (694)
Q Consensus       229 ~~----~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~----~~~l---------~~L~~L~Ls~N~L~~i-~~---~~~~~  287 (694)
                      ..    .++..+..+++|++|+|++|.+.+. .+..    +..+         ++|++|++++|.++.. .+   ..+..
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHH-HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            65    3556666677777777777766421 1111    2223         8999999999999732 22   35678


Q ss_pred             CcccceecccCCcccc-----ccchhhhcccccccccCCCCccc----cccccchhcccccCeeecCCCCCCCc----Ch
Q psy8879         288 LDKLTSLSCHHNQIDV-----LEDHSFRALSTLSHLDLAHNRIV----AVSGASLAHLSNLTTLDLSHNFLRAL----TQ  354 (694)
Q Consensus       288 L~~L~~L~Ls~N~L~~-----i~~~~f~~l~~L~~L~Ls~N~L~----~i~~~~f~~l~~L~~L~Ls~N~L~~l----~~  354 (694)
                      +++|++|++++|+++.     +.+..+..+++|+.|+|++|.++    ...+..+..+++|+.|+|++|.+++.    .+
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            8999999999999973     33336788999999999999996    44456788999999999999999876    23


Q ss_pred             hhh--CCCCCCCEEEccCCCCCC-----CCccc
Q psy8879         355 DLI--TPLKSLQELRLDDNDISM-----EPECI  380 (694)
Q Consensus       355 ~~~--~~l~~L~~L~Ls~N~L~~-----l~~~~  380 (694)
                      ..+  ..+++|+.|+|++|+++.     ++..+
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            445  348999999999999997     66554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.81  E-value=5.4e-20  Score=197.11  Aligned_cols=212  Identities=19%  Similarity=0.223  Sum_probs=161.4

Q ss_pred             ceeeccCC-cccccccccccCCcccceecccC-CccccccchhhhcccccccccCCCCccccccccchhcccccCeeecC
Q psy8879         268 KVLSIAHN-QFSSVRRGALAGLDKLTSLSCHH-NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS  345 (694)
Q Consensus       268 ~~L~Ls~N-~L~~i~~~~~~~L~~L~~L~Ls~-N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls  345 (694)
                      ..++++++ .++++|.  +..+++|++|+|++ |.|+.+++..|.++++|+.|+|++|+|+++++..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 8888876  88889999999996 99999999899999999999999999999999999999999999999


Q ss_pred             CCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccccccccccccc-CCccCccccCCcccce----e
Q psy8879         346 HNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLL-IPVMLSLCTRSSVVTR----Y  420 (694)
Q Consensus       346 ~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~-~~~~~~~C~~~~~~~~----~  420 (694)
                      +|+|+++++..+..++ |+.|+|.+|+|.            |||++.||..|++.... .....+.|..+.....    .
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~------------c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~l~~~~  155 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH------------CSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS  155 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC------------CCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCCTT
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc------------CCCccHHHHHHHHhCcccccccCCCCCCChHHhcCCccc
Confidence            9999999998888776 999999999999            99999999999974332 2446788876542111    1


Q ss_pred             eEEEEEe---ecCccccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCC-cceeE
Q psy8879         421 RYCVVLI---EGSNILDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNY-DPNCL  488 (694)
Q Consensus       421 ~~~~v~~---~~~~~~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G-~YtC~  488 (694)
                      +..+.+.   ......++....+.|.+       +.|....+......    .+.....+++| |.+|+.+|+| .|+|+
T Consensus       156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~~Y~C~  231 (347)
T 2ifg_A          156 CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV----MKSGGLPSLGLTLANVTSDLNRKNVTCW  231 (347)
T ss_dssp             CCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE----CCCCCSSEEEEEEESCCSTTTTCCEEEC
T ss_pred             CCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccc----ccceecccceEEEeeCChHHCCCeEEEE
Confidence            1112221   22245555667788876       45665554433111    11133455667 9999999999 99999


Q ss_pred             EEEEeeeccc
Q psy8879         489 LTITLYIDGD  498 (694)
Q Consensus       489 ~~n~~~~~~~  498 (694)
                      |+|..+....
T Consensus       232 a~n~~g~~~~  241 (347)
T 2ifg_A          232 AENDVGRAEV  241 (347)
T ss_dssp             CEETTEECCE
T ss_pred             EEcCCCCEEE
Confidence            9998766543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=9.5e-20  Score=184.37  Aligned_cols=161  Identities=25%  Similarity=0.350  Sum_probs=123.7

Q ss_pred             cccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccccc
Q psy8879         240 RSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD  319 (694)
Q Consensus       240 ~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~  319 (694)
                      ++|++|++++|.+.+ +.+..|..+++|+.|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            445555555555554 3355566667777777777777777666677777888888888888877777788888888888


Q ss_pred             CCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcc-cccccccc
Q psy8879         320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE-LIYSGVWR  398 (694)
Q Consensus       320 Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~-l~~~~~wl  398 (694)
                      |++|+|+.+ |..+..+++|+.|+|++|+++++++..+..+++|+.|++++|+|.            |+|. +.|++.|+
T Consensus       119 Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------c~c~~~~~l~~~~  185 (229)
T 3e6j_A          119 MCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD------------CECRDIMYLRNWV  185 (229)
T ss_dssp             CCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC------------TTBGGGHHHHHHH
T ss_pred             ccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc------------CCcchhHHHHHHH
Confidence            888888877 455788999999999999999999988999999999999999999            9996 89999998


Q ss_pred             cccc----------cCCccCccccCC
Q psy8879         399 HSTL----------LIPVMLSLCTRS  414 (694)
Q Consensus       399 ~~~~----------~~~~~~~~C~~~  414 (694)
                      ....          +.+.....|+.+
T Consensus       186 ~~~~~~~~~~~g~~v~~~~~~~C~~~  211 (229)
T 3e6j_A          186 ADHTSIAMRWDGKAVNDPDSAKCAGT  211 (229)
T ss_dssp             HHCGGGEEEESSSEEECTTCSBBTTT
T ss_pred             HhCccccccccCcccCCCCcCccCCC
Confidence            6321          224446677654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.6e-19  Score=179.18  Aligned_cols=149  Identities=28%  Similarity=0.389  Sum_probs=78.1

Q ss_pred             cEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEec
Q psy8879         121 HGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS  200 (694)
Q Consensus       121 ~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls  200 (694)
                      +.++++++.++.++..    ..++|++|++++|.++.+++..|..+ ++|++|++++|+++.+++..|.++++|++|+++
T Consensus        10 ~~v~c~~~~l~~~p~~----~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG----IPAQTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCSSCCSC----CCTTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCccCCCCC----CCCCCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            3455555555555532    12346666666666666555555555 566666666666665555555555566666666


Q ss_pred             CCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCC
Q psy8879         201 YNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN  275 (694)
Q Consensus       201 ~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N  275 (694)
                      +|+++++++..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+ +++..+..+++|+.|++++|
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSC
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCC
Confidence            665555555555555555555555555554444444444444444444444443 22333444444444444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=3.4e-19  Score=179.26  Aligned_cols=151  Identities=28%  Similarity=0.435  Sum_probs=90.4

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .++|++++++.+|..+.  .+|+.|++++|.|+.++...|.++. +|++|+|++|.++.+++..|.++ ++|++|+|++|
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N   90 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGL-RSLNSLVLYGN   90 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTC-SSCCEEECCSS
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCC-cCCCEEECCCC
Confidence            35666677777776553  4566666666666666655555543 36666666666666655556666 66666666666


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA  253 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~  253 (694)
                      .|+.+++..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            666666555666666666666666666665555666666666666666655544444555555555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=3e-19  Score=192.96  Aligned_cols=176  Identities=29%  Similarity=0.361  Sum_probs=120.1

Q ss_pred             cEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccc-cCCCCccEEEccCCCCCCCCcccccCCCCccEEEe
Q psy8879         121 HGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALA-PLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL  199 (694)
Q Consensus       121 ~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~-~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~L  199 (694)
                      +.++++++.++.++..    +...++.|+|++|.|+.+++..|. ++ ++|++|+|++|+|+.+++..|.++++|++|+|
T Consensus        21 ~~l~c~~~~l~~iP~~----~~~~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS----LPSYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSCCSS----CCTTCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCccCcc----CCCCCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            3678888888887753    234578888888888888777776 67 78888888888888887777888888888888


Q ss_pred             cCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCC---CCccccceeeccCCc
Q psy8879         200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTV---PRLSSLKVLSIAHNQ  276 (694)
Q Consensus       200 s~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~---~~l~~L~~L~Ls~N~  276 (694)
                      ++|+++.+++..|..+++|++|+|++|+++...+..|.++++|+.|+|++|.+.+ +++..|   ..+++|+.|+|++|.
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCC
Confidence            8888887777777777888888888877776666666666666666666666664 333333   345555555555555


Q ss_pred             ccccccccccCCcc--cceecccCCccc
Q psy8879         277 FSSVRRGALAGLDK--LTSLSCHHNQID  302 (694)
Q Consensus       277 L~~i~~~~~~~L~~--L~~L~Ls~N~L~  302 (694)
                      ++.++...+..++.  ++.|+|++|.+.
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCcc
Confidence            55555544544444  245555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=3e-19  Score=187.38  Aligned_cols=191  Identities=27%  Similarity=0.341  Sum_probs=118.2

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ  224 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls  224 (694)
                      +..+.+..+.+.++..  +..+ ++|++|++++|.++.++  .+..+++|++|++++|+++++++  +..+++|++|+++
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l-~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHH-HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHhcCCCcccccc--hhhc-CcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence            4444566666665443  3455 77788888888777764  36677778888888877777765  6777777777777


Q ss_pred             CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879         225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL  304 (694)
Q Consensus       225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i  304 (694)
                      +|++++.  ..+..+++|++|++++|.+.                         +++  .+..+++|++|++++|+++.+
T Consensus        99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~-------------------------~~~--~l~~l~~L~~L~l~~n~l~~~  149 (291)
T 1h6t_A           99 ENKVKDL--SSLKDLKKLKSLSLEHNGIS-------------------------DIN--GLVHLPQLESLYLGNNKITDI  149 (291)
T ss_dssp             SSCCCCG--GGGTTCTTCCEEECTTSCCC-------------------------CCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred             CCcCCCC--hhhccCCCCCEEECCCCcCC-------------------------CCh--hhcCCCCCCEEEccCCcCCcc
Confidence            7777642  22555555555555555554                         431  244455555555555555554


Q ss_pred             cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCC
Q psy8879         305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEP  377 (694)
Q Consensus       305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~  377 (694)
                        ..+..+++|+.|++++|+++++.+  +..+++|+.|+|++|.+++++.  +..+++|+.|++++|+++..|
T Consensus       150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred             --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence              245556666666666666666544  5566666666666666666543  566667777777776665433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=7.7e-19  Score=200.81  Aligned_cols=219  Identities=23%  Similarity=0.297  Sum_probs=137.1

Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL  223 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L  223 (694)
                      +|+.|+|++|.|+++|...   . ++|++|+|++|+|+.++    ..+++|++|++++|++++++.  |..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~-~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---P-PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---C-TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCccCHhH---c-CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence            4777777777777776643   2 56777777777777665    345677777777777777654  443  7777777


Q ss_pred             cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879         224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV  303 (694)
Q Consensus       224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~  303 (694)
                      ++|++++ +|.   .+++|+.|++++|.+++ + |.   .+++|+.|+|++|.+++++.  |.  ++|+.|+|++|+|+.
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l-p~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-L-PE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-C-CC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-C-CC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc
Confidence            7777776 333   46777777777777775 4 33   45677777777777777654  44  777777777777776


Q ss_pred             ccchhhhccccc-------ccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCC-------CEEEcc
Q psy8879         304 LEDHSFRALSTL-------SHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL-------QELRLD  369 (694)
Q Consensus       304 i~~~~f~~l~~L-------~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L-------~~L~Ls  369 (694)
                      ++.  |..  +|       +.|+|++|+|+.++. .+..+++|+.|+|++|.+++..+..+..+...       ..++++
T Consensus       195 lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~  269 (571)
T 3cvr_A          195 LPA--VPV--RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS  269 (571)
T ss_dssp             CCC--CC----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC-
T ss_pred             hhh--HHH--hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeec
Confidence            665  333  55       777777777777644 34447777777777777776655544433211       122333


Q ss_pred             CCCCCCCCcccccCCCC-CCccccccccccc
Q psy8879         370 DNDISMEPECIYVGFNT-MDLELIYSGVWRH  399 (694)
Q Consensus       370 ~N~L~~l~~~~f~~~Np-CdC~l~~~~~wl~  399 (694)
                      +|.+..+       .+| |+|...||..+..
T Consensus       270 ~~~~~~~-------~~p~~~~~~~Wl~~~~~  293 (571)
T 3cvr_A          270 DGQQNTL-------HRPLADAVTAWFPENKQ  293 (571)
T ss_dssp             ----------------CCSHHHHTTCC----
T ss_pred             ccccccc-------cccchhhHHHHhhhhcc
Confidence            4433322       233 9999999988775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=7.4e-19  Score=176.78  Aligned_cols=152  Identities=24%  Similarity=0.409  Sum_probs=101.5

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCc-chhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISD-GAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH  177 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~-~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~  177 (694)
                      .++|++|.++.+|..+..  .+++|++++|.++.+.. ..|.++. +|++|+|++|.|+.+++..|.++ ++|++|+|++
T Consensus        15 ~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l-~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGA-SGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTC-TTCCEEECCS
T ss_pred             EeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCC-CCCCEEECCC
Confidence            467777888888776543  45677777777776643 3454443 37777777777777766666666 6777777777


Q ss_pred             CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCC
Q psy8879         178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAG  254 (694)
Q Consensus       178 N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~  254 (694)
                      |.++.+++..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+.+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            77777766667677777777777777777666666666667777777666666556666666666666666665553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=4.2e-19  Score=186.28  Aligned_cols=188  Identities=27%  Similarity=0.335  Sum_probs=129.4

Q ss_pred             ccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEe
Q psy8879         120 LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDL  199 (694)
Q Consensus       120 L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~L  199 (694)
                      +..+.+..+.+..+...  .. +++|++|++++|.++.++.  +..+ ++|++|++++|+++++++  +.++++|++|++
T Consensus        26 ~~~~~l~~~~~~~~~~~--~~-l~~L~~L~l~~~~i~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l   97 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVTQ--NE-LNSIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFL   97 (291)
T ss_dssp             HHHHHTTCSCTTSEECH--HH-HHTCCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             HHHHHhcCCCcccccch--hh-cCcccEEEccCCCcccChh--HhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence            34445666666654321  22 3459999999999999965  7788 999999999999999886  899999999999


Q ss_pred             cCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccc
Q psy8879         200 SYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS  279 (694)
Q Consensus       200 s~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~  279 (694)
                      ++|.+++++.  +..+++|++|++++|++++.  ..+..+++|+.|++++|.+.+.   ..+..+++|+.|++++|.+++
T Consensus        98 ~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A           98 DENKVKDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             CSSCCCCGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCcCCCChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCcccc
Confidence            9999998754  89999999999999999864  4566777777777777777642   345555555555555555555


Q ss_pred             cccccccCCcccceecccCCccccccchhhhcccccccccCCCCccc
Q psy8879         280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV  326 (694)
Q Consensus       280 i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~  326 (694)
                      +++  +..+++|++|++++|.++.++.  +..+++|+.|++++|+++
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEE
T ss_pred             chh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCccc
Confidence            443  4444555555555554444321  333444444444444333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.78  E-value=3e-19  Score=176.06  Aligned_cols=159  Identities=23%  Similarity=0.346  Sum_probs=137.5

Q ss_pred             ccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCC
Q psy8879         243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAH  322 (694)
Q Consensus       243 ~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~  322 (694)
                      +.+++++|.+.. + |..+.  ++|++|++++|.++.++ ..|.++++|++|+|++|.|+.+++..|.++++|+.|+|++
T Consensus        13 ~~l~~~~~~l~~-i-p~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKV-L-PKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSS-C-CSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCc-C-CCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            467778888774 4 43333  58999999999999887 6789999999999999999999999999999999999999


Q ss_pred             CccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccc
Q psy8879         323 NRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTL  402 (694)
Q Consensus       323 N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~  402 (694)
                      |+|+++++..|.++++|+.|+|++|+++.+++..|..+++|+.|++++|+|.            |||++.||..|+....
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------------C~c~l~~l~~~~~~~~  155 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY------------CDCNMQWLSDWVKSEY  155 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE------------CSGGGHHHHHHHHHSS
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee------------cCCcCHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999            9999999999997543


Q ss_pred             cCCccCccccCCcccce
Q psy8879         403 LIPVMLSLCTRSSVVTR  419 (694)
Q Consensus       403 ~~~~~~~~C~~~~~~~~  419 (694)
                      . ....+.|+.|...++
T Consensus       156 ~-~~~~~~C~~P~~l~g  171 (193)
T 2wfh_A          156 K-EPGIARCAGPGEMAD  171 (193)
T ss_dssp             C-CCSCCBEEESGGGTT
T ss_pred             C-CCCCcCcCCchHHCC
Confidence            2 334578887655433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.7e-19  Score=208.10  Aligned_cols=170  Identities=29%  Similarity=0.372  Sum_probs=87.4

Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL  223 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L  223 (694)
                      +|+.|++++|.+..++.  +..+ ++|+.|+|++|.|+.+++  +..+++|+.|+|++|.+.+++  .+..+++|++|+|
T Consensus        44 ~L~~L~l~~n~i~~l~~--l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L  116 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSL  116 (605)
T ss_dssp             TCCCCBCTTCCCCCCTT--GGGC-TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCCCChH--HccC-CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEe
Confidence            36666666666665542  4555 566666666666655554  555566666666666655543  2555555555555


Q ss_pred             cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879         224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV  303 (694)
Q Consensus       224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~  303 (694)
                      ++|++.+.  ..+..+++|+.|+|++|.+                         +++  ..+..+++|+.|+|++|.|+.
T Consensus       117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l-------------------------~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          117 EHNGISDI--NGLVHLPQLESLYLGNNKI-------------------------TDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             TTSCCCCC--GGGGGCTTCSEEECCSSCC-------------------------CCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             cCCCCCCC--ccccCCCccCEEECCCCcc-------------------------CCc--hhhcccCCCCEEECcCCcCCC
Confidence            55555532  2344444444444444444                         443  234444444444444444444


Q ss_pred             ccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcC
Q psy8879         304 LEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT  353 (694)
Q Consensus       304 i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~  353 (694)
                      +++  +..+++|+.|+|++|+|++++  .+..+++|+.|+|++|.+...+
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCC
T ss_pred             chh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCc
Confidence            433  444455555555555554441  2444555555555555554443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.77  E-value=2.7e-18  Score=188.48  Aligned_cols=251  Identities=14%  Similarity=0.232  Sum_probs=213.9

Q ss_pred             CCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEE
Q psy8879         118 VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFL  197 (694)
Q Consensus       118 ~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L  197 (694)
                      ..++.+.+. +.++.|+..+|.+.  +|+.+.+.++ ++.++..+|.+.  +|+.+.+.. .++.+...+|.++++|+.+
T Consensus       113 ~~l~~i~ip-~~i~~I~~~aF~~~--~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          113 KGYNEIILP-NSVKSIPKDAFRNS--QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             SSCSEEECC-TTCCEECTTTTTTC--CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             CCccEEEEC-CccCEehHhhcccC--CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            567788875 46888999999873  4999999876 888998889875  699999985 7888888899999999999


Q ss_pred             EecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcc
Q psy8879         198 DLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF  277 (694)
Q Consensus       198 ~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L  277 (694)
                      ++.+|+++.++..+|. ..+|+.+.+.++ ++.+...+|.++++|+.+++..+ +. .++...|.+ .+|+.+.+ .+.+
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i  259 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL-PNGV  259 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEE-ETTC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEe-CCCc
Confidence            9999999999988888 488999999854 77677888999999999999875 43 366777877 78999999 5668


Q ss_pred             cccccccccCCcccceecccCCccc-----cccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCc
Q psy8879         278 SSVRRGALAGLDKLTSLSCHHNQID-----VLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL  352 (694)
Q Consensus       278 ~~i~~~~~~~L~~L~~L~Ls~N~L~-----~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l  352 (694)
                      +.+...+|.++++|+.+++.+|.+.     .++..+|.++++|+.++|. +.++.+...+|.++.+|+.++|.+| ++.+
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            8888899999999999999888765     7888999999999999998 5699999999999999999999654 8889


Q ss_pred             ChhhhCCCCCCCEEEccCCCCCCCCcccccCC
Q psy8879         353 TQDLITPLKSLQELRLDDNDISMEPECIYVGF  384 (694)
Q Consensus       353 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~  384 (694)
                      ...+|.++ +|+.+++.+|.+..++...|.+.
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             cHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence            99999999 99999999999998888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=1.8e-19  Score=192.14  Aligned_cols=238  Identities=18%  Similarity=0.195  Sum_probs=137.3

Q ss_pred             CCCccEEEccCCCCC--CCCcchhcCCCCCccEEEccCCCCCCCCcccccc--------CCCCccEEEccCCCCCCCCcc
Q psy8879         117 GVTLHGLVISSGELK--NISDGAFIGLSSPLQALGLPNNLLSVVPTSALAP--------LAPNLDRLDLSHNQLYKLENT  186 (694)
Q Consensus       117 ~~~L~~L~Ls~n~i~--~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~--------l~~~L~~L~Ls~N~L~~i~~~  186 (694)
                      +++|+.|+|++|+|.  ......|.    .++.+.+..|   .++..+|.+        + ++|+.|+|.+ .++.+...
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~----~~~~~~~~~~---~I~~~aF~~~~~~~~~g~-~~L~~l~L~~-~i~~I~~~  118 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYP----NGKFYIYMAN---FVPAYAFSNVVNGVTKGK-QTLEKVILSE-KIKNIEDA  118 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSG----GGCCEEECTT---EECTTTTEEEETTEEEEC-TTCCC-CBCT-TCCEECTT
T ss_pred             hccCeEEecCcceeEEecCcccccc----cccccccccc---ccCHHHhccccccccccc-CCCcEEECCc-cccchhHH
Confidence            455666666666665  22221111    1233333333   344444555        5 5555555555 55555555


Q ss_pred             cccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcc----cchhhhhhccCcc---------------------
Q psy8879         187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL----TVSVVAALQGLRS---------------------  241 (694)
Q Consensus       187 ~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l----~~~~~~~~~~L~~---------------------  241 (694)
                      +|.++++|++|++.+|.+..+++.+|..+.++..+.+..+..    .......|.++..                     
T Consensus       119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~  198 (329)
T 3sb4_A          119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAG  198 (329)
T ss_dssp             TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred             HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcc
Confidence            555555555555555555555555555554444444433211    1111222322223                     


Q ss_pred             -----cccccCCCCcCCCCCCCCCC-CCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccc
Q psy8879         242 -----VTDLDLSHNLLAGPLGPSTV-PRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL  315 (694)
Q Consensus       242 -----L~~L~Ls~N~l~~~i~p~~~-~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L  315 (694)
                           +..+.+.++-...  ....+ ..+++|+.|+|++|+++.++..+|.++++|++|+|.+| ++.++..+|.++++|
T Consensus       199 ~~~~~~~~l~~~~~l~~~--~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L  275 (329)
T 3sb4_A          199 LQPRDINFLTIEGKLDNA--DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL  275 (329)
T ss_dssp             CCGGGCSEEEEEECCCHH--HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             cCccccceEEEeeeecHH--HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence                 3333332221100  00001 12567888888887788887778888888888888776 777777788888888


Q ss_pred             c-cccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEE
Q psy8879         316 S-HLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR  367 (694)
Q Consensus       316 ~-~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~  367 (694)
                      + .+++.+ .++.+.+.+|.++++|+.|++++|.++.++..+|.++++|+.++
T Consensus       276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            7 888877 77777777888888888888888888888877788888887775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=1.5e-18  Score=170.60  Aligned_cols=160  Identities=23%  Similarity=0.345  Sum_probs=136.4

Q ss_pred             ccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccc-cccCCcccceecccCCccccccchhhhcccccccccCC
Q psy8879         243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRG-ALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA  321 (694)
Q Consensus       243 ~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~-~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls  321 (694)
                      +.+++++|.+.. + |..+..  +|++|++++|.++++++. .|.++++|++|+|++|+|+.+.+..|.++++|++|+|+
T Consensus        11 ~~l~~s~~~l~~-i-p~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKE-I-PRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSS-C-CSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCc-C-ccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            567788888764 4 444433  889999999999988764 58899999999999999999988899999999999999


Q ss_pred             CCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccccccccccc
Q psy8879         322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHST  401 (694)
Q Consensus       322 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~  401 (694)
                      +|+|+++++..|.++++|+.|+|++|+++++++..+..+++|+.|++++|+|+            |+|.+.|+..|++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------------c~c~l~~~~~~l~~~  154 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN------------CNCHLAWFAEWLRKK  154 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC------------CSGGGHHHHHHHHHH
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc------------CcCcchHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999            999999999999743


Q ss_pred             ccCCccCccccCCcccce
Q psy8879         402 LLIPVMLSLCTRSSVVTR  419 (694)
Q Consensus       402 ~~~~~~~~~C~~~~~~~~  419 (694)
                      . .....+.|..+...++
T Consensus       155 ~-~~~~~~~C~~P~~l~~  171 (192)
T 1w8a_A          155 S-LNGGAARCGAPSKVRD  171 (192)
T ss_dssp             C-CSGGGCBBCSSTTTTT
T ss_pred             C-CCCCCCCCCCChHHcC
Confidence            2 2234567877655443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.75  E-value=1.2e-17  Score=183.38  Aligned_cols=263  Identities=15%  Similarity=0.247  Sum_probs=225.3

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      .++.+.+. ++++.++...+...+|+.+.+..+ ++.|+..+|.+.  +|+.+.+.+ .++.+...+|.++ ++|+.+++
T Consensus       114 ~l~~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c-~~L~~l~l  187 (401)
T 4fdw_A          114 GYNEIILP-NSVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYC-YNLKKADL  187 (401)
T ss_dssp             SCSEEECC-TTCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTC-TTCCEEEC
T ss_pred             CccEEEEC-CccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCc-ccCCeeec
Confidence            44455554 346666555444568999999766 999999999984  599999996 8999999999999 99999999


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      ++|+++.++..+|. ..+|+.+.|.. .++.+...+|.++++|+.+.+..+ ++.+...+|.+ .+|+.+.+.+ .+. .
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-~  261 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT-N  261 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC-E
T ss_pred             CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc-E
Confidence            99999999999998 58999999984 499999999999999999999875 66667778888 7899999954 454 3


Q ss_pred             CCCCCCCCccccceeeccCCccc-----ccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQFS-----SVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG  330 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~L~-----~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~  330 (694)
                      ++...|.++++|+.+++.+|.+.     .+...+|.++++|+.+.|. +.++.+...+|.++++|+.+.|..| ++.+..
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            67889999999999999988776     6888999999999999999 5699999999999999999999654 899999


Q ss_pred             cchhcccccCeeecCCCCCCCcChhhhCCCC-CCCEEEccCCCC
Q psy8879         331 ASLAHLSNLTTLDLSHNFLRALTQDLITPLK-SLQELRLDDNDI  373 (694)
Q Consensus       331 ~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~-~L~~L~Ls~N~L  373 (694)
                      .+|.++ +|+.|++++|.+..+....|..++ +++.|.+..+.+
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            999999 999999999999999988888884 788998877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.5e-18  Score=200.18  Aligned_cols=194  Identities=27%  Similarity=0.329  Sum_probs=139.2

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ  224 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls  224 (694)
                      +..+.+..+.+..+..  +..+ ++|+.|++++|.+..++  .|..+++|+.|+|++|++.++++               
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L-~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~---------------   82 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP---------------   82 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHH-TTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG---------------
T ss_pred             HHHHhccCCCcccccc--hhcC-CCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh---------------
Confidence            3334444444444333  3344 45555555555555443  24445555555555555444433               


Q ss_pred             CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879         225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL  304 (694)
Q Consensus       225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i  304 (694)
                                 +..+++|+.|+|++|.+.+ +  ..+..+++|+.|+|++|.+.+++  .+..+++|+.|+|++|.++.+
T Consensus        83 -----------l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l  146 (605)
T 1m9s_A           83 -----------LTNLKNLGWLFLDENKIKD-L--SSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI  146 (605)
T ss_dssp             -----------GGGCTTCCEEECCSSCCCC-C--TTSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC
T ss_pred             -----------hccCCCCCEEECcCCCCCC-C--hhhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc
Confidence                       4445555555555555554 2  24677888899999999888864  478899999999999999988


Q ss_pred             cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCccc
Q psy8879         305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI  380 (694)
Q Consensus       305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~  380 (694)
                        ..+..+++|+.|+|++|+|+++.+  +..+++|+.|+|++|+|++++  .+..+++|+.|+|++|++...|...
T Consensus       147 --~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          147 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             --GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCC
T ss_pred             --hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccc
Confidence              468999999999999999999977  889999999999999999984  4888999999999999998766543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=2.9e-17  Score=166.07  Aligned_cols=150  Identities=28%  Similarity=0.346  Sum_probs=82.4

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .++|++++++.+|..+.  ++|+.|++++|.++.+.+..|.++. +|++|+|++|.|+.+++..|..+ ++|++|+|++|
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l-~~L~~L~Ls~N   98 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTN   98 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSS
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccC-CCcCEEECCCC
Confidence            35666667777776543  4566666666666665555554443 36666666666655555555555 55556666555


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA  253 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~  253 (694)
                      +|+.+++..|..+++|++|+|++|+++.++. .+..+++|++|++++|++++..+..|..+++|+.|++++|.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            5555555555555555555555555554432 2445555555555555555444444444444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.3e-18  Score=185.36  Aligned_cols=256  Identities=13%  Similarity=0.137  Sum_probs=195.6

Q ss_pred             CCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCC--CCCccccccCCCCccEEEccCCCCCCCCcccccC----
Q psy8879         117 GVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLS--VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKG----  190 (694)
Q Consensus       117 ~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~--~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~----  190 (694)
                      +.++++|.++++ +...+...+...+.+|++|+|++|++.  ......+    +.++.+.+..|   .++..+|.+    
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~----~~~~~~~~~~~---~I~~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY----PNGKFYIYMAN---FVPAYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS----GGGCCEEECTT---EECTTTTEEEETT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc----ccccccccccc---ccCHHHhcccccc
Confidence            346788888753 222222233343567999999999998  3333322    33455666666   567788888    


Q ss_pred             ----CCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC---CCCCCCCCCCC
Q psy8879         191 ----LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL---AGPLGPSTVPR  263 (694)
Q Consensus       191 ----L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l---~~~i~p~~~~~  263 (694)
                          +++|++|+|.+ .++.+...+|.++++|+.|++.+|.+..+.+.+|.++.++..+.+..+..   ...+....|.+
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                99999999999 99999999999999999999999999888889999988888888766322   11133445655


Q ss_pred             ccccc-eeeccCCc------------------------ccccccccc-cCCcccceecccCCccccccchhhhccccccc
Q psy8879         264 LSSLK-VLSIAHNQ------------------------FSSVRRGAL-AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH  317 (694)
Q Consensus       264 l~~L~-~L~Ls~N~------------------------L~~i~~~~~-~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~  317 (694)
                      +..|+ .+.+....                        +.......+ ..+++|++|+|++|+++.++..+|.++++|+.
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~  254 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK  254 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence            55555 33332110                        111111111 13789999999999999999999999999999


Q ss_pred             ccCCCCccccccccchhcccccC-eeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879         318 LDLAHNRIVAVSGASLAHLSNLT-TLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG  383 (694)
Q Consensus       318 L~Ls~N~L~~i~~~~f~~l~~L~-~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~  383 (694)
                      |+|.+| ++.++..+|.++++|+ .+++.+ .++.+++..|.++++|+.+++++|.++.++...|.+
T Consensus       255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~  319 (329)
T 3sb4_A          255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN  319 (329)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred             EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence            999998 9999999999999999 999999 899999999999999999999999999999998854

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=1.2e-17  Score=161.55  Aligned_cols=157  Identities=26%  Similarity=0.380  Sum_probs=135.7

Q ss_pred             cccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCC
Q psy8879         242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA  321 (694)
Q Consensus       242 L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls  321 (694)
                      .+.++++++.+.. + |..+  .++|+.|++++|+++++++..|.++++|++|++++|.++.+++..|..+++|+.|+++
T Consensus         9 ~~~l~~~~~~l~~-~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-V-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSS-C-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCcc-C-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4567777777764 3 3323  2588999999999999888888899999999999999999998889999999999999


Q ss_pred             CCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcc-cccccccccc
Q psy8879         322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE-LIYSGVWRHS  400 (694)
Q Consensus       322 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~-l~~~~~wl~~  400 (694)
                      +|+++++++..|..+++|+.|+|++|+++++++..+..+++|+.|++++|++.            |+|. +.|+..|++.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------~~~~~l~~l~~~~~~  152 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD------------CSCPRIDYLSRWLNK  152 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------------CCHHHHHHHHHHHHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee------------ccCccHHHHHHHHhh
Confidence            99999998888999999999999999999999988899999999999999999            9997 8899999976


Q ss_pred             cccCCccCccccCC
Q psy8879         401 TLLIPVMLSLCTRS  414 (694)
Q Consensus       401 ~~~~~~~~~~C~~~  414 (694)
                      ........+.|..+
T Consensus       153 ~~~~~~~~~~C~~~  166 (177)
T 2o6r_A          153 NSQKEQGSAKCSGS  166 (177)
T ss_dssp             TGGGEESCCBBTTT
T ss_pred             CccccccCcEeCCC
Confidence            55555567888754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.6e-18  Score=177.66  Aligned_cols=168  Identities=23%  Similarity=0.296  Sum_probs=78.2

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ  224 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls  224 (694)
                      ++.+++++|.+++++  .+..+ ++|++|++++|.++.++  .+..+++|++|++++|+++++++  +..+++|++|+++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            344444444444443  13344 44455555544444443  24444444444444444444433  4444444444444


Q ss_pred             CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879         225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL  304 (694)
Q Consensus       225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i  304 (694)
                      +|++++.                          +. +.. ++|+.|++++|++++++  .+.++++|++|++++|+++.+
T Consensus        94 ~N~l~~l--------------------------~~-~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           94 RNRLKNL--------------------------NG-IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             SSCCSCC--------------------------TT-CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC
T ss_pred             CCccCCc--------------------------Cc-ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC
Confidence            4444321                          11 111 34444444444444432  244455555555555555544


Q ss_pred             cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcC
Q psy8879         305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT  353 (694)
Q Consensus       305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~  353 (694)
                      +  .+..+++|+.|++++|+++++  ..+..+++|+.|++++|.+...+
T Consensus       144 ~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          144 V--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             G--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             h--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            3  344555555555555555554  33455555555555555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.8e-17  Score=171.33  Aligned_cols=167  Identities=21%  Similarity=0.258  Sum_probs=81.0

Q ss_pred             eeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879          97 VSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS  176 (694)
Q Consensus        97 L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls  176 (694)
                      +..++++.+.++.++ .+..+++|++|++++|.++.++  .|..+ .+|++|++++|.++++++  +..+ ++|++|+|+
T Consensus        21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~L~~N~i~~~~~--l~~l-~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFF-TNLKELHLSHNQISDLSP--LKDL-TKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--GTTC-SSCCEEECC
T ss_pred             HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhC-CCCCEEECCCCccCCChh--hccC-CCCCEEECC
Confidence            444555555555554 3444555555555555555554  23332 235555555555555554  4444 555555555


Q ss_pred             CCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCC
Q psy8879         177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPL  256 (694)
Q Consensus       177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i  256 (694)
                      +|+++.++.  +.. ++|++|++++|++++++  .+..+++|++|++++|++++.  ..+..+++|++|++++|.+.+. 
T Consensus        94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             SSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch-
Confidence            555555443  112 45555555555555442  244555555555555555432  1344444455555554444431 


Q ss_pred             CCCCCCCccccceeeccCCccccc
Q psy8879         257 GPSTVPRLSSLKVLSIAHNQFSSV  280 (694)
Q Consensus       257 ~p~~~~~l~~L~~L~Ls~N~L~~i  280 (694)
                        ..+..+++|+.|++++|.+...
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              2344444444444444444433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=4e-18  Score=195.04  Aligned_cols=276  Identities=12%  Similarity=0.046  Sum_probs=145.8

Q ss_pred             CCeeEEEcCCCCCCCC-----CccccCCCCccEEEccCCCCCCCCcchhc---CCCCCccEEEccCCCCCCCCccccccC
Q psy8879          95 ERVSLLDCTLSNVTVL-----PGKFLEGVTLHGLVISSGELKNISDGAFI---GLSSPLQALGLPNNLLSVVPTSALAPL  166 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~l-----p~~~~~~~~L~~L~Ls~n~i~~i~~~~F~---~l~~~L~~L~Ls~N~L~~lp~~~~~~l  166 (694)
                      ..|+.|++++|.++..     +.....+++|++|++++|.++.+....+.   ...++|++|++++|.+..++. .+..+
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~  242 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAA  242 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHC
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhh
Confidence            3788999999887432     23344677899999998888766544432   223568899998887776553 45555


Q ss_pred             CCCccEEEccCC---------------------------CCCCCCcccccCCCCccEEEecCCCCCCCCc-cccCCCCCC
Q psy8879         167 APNLDRLDLSHN---------------------------QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTL  218 (694)
Q Consensus       167 ~~~L~~L~Ls~N---------------------------~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L  218 (694)
                       ++|++|+++..                           ....+ +..+..+++|++|++++|.+++... ..+..+++|
T Consensus       243 -~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          243 -ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             -TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             -hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence             66666666532                           11111 2334556677777777776543322 234566677


Q ss_pred             cEEeccCCcccchhhhhhccCcccccccCCC-----------CcCCCCCCCCCCCCccccceeeccCCcccccccccccC
Q psy8879         219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSH-----------NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG  287 (694)
Q Consensus       219 ~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~-----------N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~  287 (694)
                      ++|+++++-.....+..+..+++|++|++++           |.+++.-.......+++|++|+++.|.+++.....+..
T Consensus       321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            7777763222222333345566677777762           33332100111233566666666666665543333332


Q ss_pred             -Ccccceeccc----CCccccccc-----hhhhcccccccccCCCCc--cccccccchh-cccccCeeecCCCCCCCcC-
Q psy8879         288 -LDKLTSLSCH----HNQIDVLED-----HSFRALSTLSHLDLAHNR--IVAVSGASLA-HLSNLTTLDLSHNFLRALT-  353 (694)
Q Consensus       288 -L~~L~~L~Ls----~N~L~~i~~-----~~f~~l~~L~~L~Ls~N~--L~~i~~~~f~-~l~~L~~L~Ls~N~L~~l~-  353 (694)
                       +++|++|+++    .|.++..+.     ..+.++++|+.|++++|.  +++.....+. .+++|+.|+|++|.+++.. 
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence             5566666664    445544321     123445555555554322  3333222222 2455555555555544321 


Q ss_pred             hhhhCCCCCCCEEEccCCCC
Q psy8879         354 QDLITPLKSLQELRLDDNDI  373 (694)
Q Consensus       354 ~~~~~~l~~L~~L~Ls~N~L  373 (694)
                      +..+..+++|+.|++++|++
T Consensus       481 ~~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCCC
T ss_pred             HHHHhcCcccCeeeccCCCC
Confidence            22334455555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=2.4e-18  Score=196.89  Aligned_cols=280  Identities=16%  Similarity=0.132  Sum_probs=193.2

Q ss_pred             CCeeEEEcCCCCCCC-----CCccccCCCCccEEEccCCCCCCCCcchhcCCC--------------------------C
Q psy8879          95 ERVSLLDCTLSNVTV-----LPGKFLEGVTLHGLVISSGELKNISDGAFIGLS--------------------------S  143 (694)
Q Consensus        95 ~~L~~Ldls~n~l~~-----lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~--------------------------~  143 (694)
                      ..|+.|+++.|.++.     ++..+..+++|++|++++|.+..++ ..|.++.                          .
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~  270 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR  270 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence            377888888888762     3334456778888888887766543 2232222                          2


Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCc-ccccCCCCccEEEecCCCCCCC-CccccCCCCCCcEE
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN-TSFKGLSSLNFLDLSYNKLMTL-SQDCLAPLVTLRVL  221 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~-~~f~~L~~L~~L~Ls~N~l~~i-~~~~f~~L~~L~~L  221 (694)
                      +|+.|+++++....++. .+..+ ++|++|+|++|.++.... ..+.++++|++|+++ +.+... .+..+..+++|++|
T Consensus       271 ~L~~L~l~~~~~~~l~~-~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          271 KLCRLGLSYMGPNEMPI-LFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             TCCEEEETTCCTTTGGG-GGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccCccccchhHHHH-HHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence            34445554443344443 45566 899999999998765433 336889999999999 444332 23334668899999


Q ss_pred             ecc-----------CCcccchhh-hhhccCcccccccCCCCcCCCCCCCCCCCC-ccccceeecc----CCcccccc---
Q psy8879         222 RLQ-----------GNRLTVSVV-AALQGLRSVTDLDLSHNLLAGPLGPSTVPR-LSSLKVLSIA----HNQFSSVR---  281 (694)
Q Consensus       222 ~Ls-----------~N~l~~~~~-~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~-l~~L~~L~Ls----~N~L~~i~---  281 (694)
                      +++           .|.+++... .....+++|++|+++.|.+++.. ...+.. +++|+.|+++    .|.+++.+   
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES-LESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH-HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH-HHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            999           366765433 33556899999999888887532 333433 7899999996    67787642   


Q ss_pred             --cccccCCcccceecccCCc--cccccchhhh-cccccccccCCCCcccccc-ccchhcccccCeeecCCCCCCCc-Ch
Q psy8879         282 --RGALAGLDKLTSLSCHHNQ--IDVLEDHSFR-ALSTLSHLDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRAL-TQ  354 (694)
Q Consensus       282 --~~~~~~L~~L~~L~Ls~N~--L~~i~~~~f~-~l~~L~~L~Ls~N~L~~i~-~~~f~~l~~L~~L~Ls~N~L~~l-~~  354 (694)
                        +..+.++++|++|+++++.  ++......+. .+++|+.|++++|++++.. +..+.++++|+.|+|++|.+++. .+
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  506 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA  506 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence              2236678999999997543  5543333333 4789999999999998743 34457889999999999998653 23


Q ss_pred             hhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879         355 DLITPLKSLQELRLDDNDISMEPEC  379 (694)
Q Consensus       355 ~~~~~l~~L~~L~Ls~N~L~~l~~~  379 (694)
                      .....+++|+.|++++|+++.....
T Consensus       507 ~~~~~l~~L~~L~ls~n~it~~~~~  531 (592)
T 3ogk_B          507 AAVTKLPSLRYLWVQGYRASMTGQD  531 (592)
T ss_dssp             HHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred             HHHHhcCccCeeECcCCcCCHHHHH
Confidence            4455789999999999998855433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.5e-16  Score=156.70  Aligned_cols=149  Identities=21%  Similarity=0.283  Sum_probs=104.0

Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL  223 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L  223 (694)
                      +|++|++++|.++.++  .+..+ ++|++|++++|.++.++  .+.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        45 ~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           45 SLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             TCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            4778888888887777  36666 78888888888766554  5777888888888888887766666777888888888


Q ss_pred             cCCcccchhhhhhccCcccccccCCCCc-CCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccc
Q psy8879         224 QGNRLTVSVVAALQGLRSVTDLDLSHNL-LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQID  302 (694)
Q Consensus       224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~-l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~  302 (694)
                      ++|++++..+..+..+++|++|++++|. +.. + + .+..+++|+.|++++|.+++++  .+..+++|++|++++|++.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-I-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-C-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-c-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            8888877677777777777777777776 443 3 2 4566666666666666666654  4555666666666666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=9e-17  Score=158.32  Aligned_cols=153  Identities=22%  Similarity=0.274  Sum_probs=90.4

Q ss_pred             cCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccc
Q psy8879         189 KGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK  268 (694)
Q Consensus       189 ~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~  268 (694)
                      ..+++|++|++++|.++.++  .+..+++|++|++++|.++.  +..+.                         .+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~-------------------------~l~~L~   91 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPIS-------------------------GLSNLE   91 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGT-------------------------TCTTCC
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhh-------------------------cCCCCC
Confidence            45566777777777777655  36666777777777765442  12344                         444555


Q ss_pred             eeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCc-cccccccchhcccccCeeecCCC
Q psy8879         269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR-IVAVSGASLAHLSNLTTLDLSHN  347 (694)
Q Consensus       269 ~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~-L~~i~~~~f~~l~~L~~L~Ls~N  347 (694)
                      +|++++|.+++..+..+.++++|++|++++|+++...+..+..+++|+.|++++|+ ++.++  .+..+++|+.|++++|
T Consensus        92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A           92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD  169 (197)
T ss_dssp             EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTB
T ss_pred             EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCC
Confidence            55555555554444445555556666666665555444555566666666666665 55553  3566666777777777


Q ss_pred             CCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879         348 FLRALTQDLITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       348 ~L~~l~~~~~~~l~~L~~L~Ls~N~L~  374 (694)
                      ++++++  .+..+++|+.|++++|++.
T Consensus       170 ~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          170 GVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             CCcChH--HhccCCCCCEEEeeCcccC
Confidence            766655  3556677777777777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=3.8e-16  Score=153.48  Aligned_cols=131  Identities=25%  Similarity=0.373  Sum_probs=97.1

Q ss_pred             eEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcc-hhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc
Q psy8879          98 SLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDG-AFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS  176 (694)
Q Consensus        98 ~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~-~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls  176 (694)
                      +.+++++++++.+|..+..  +|++|++++|.++.++.. .|..+. +|++|+|++|.|+.+++..|.++ ++|++|+|+
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGA-SHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTC-TTCCEEECC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCc-ccCCEEECC
Confidence            3578888888888876654  778888888888777764 354443 47777777777777777677777 777777777


Q ss_pred             CCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchh
Q psy8879         177 HNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV  232 (694)
Q Consensus       177 ~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~  232 (694)
                      +|+|+++++..|.++++|++|+|++|+++++.+..|..+++|++|++++|.+.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            77777777777777777777777777777777777777777777777777776543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.65  E-value=1.1e-17  Score=191.23  Aligned_cols=183  Identities=14%  Similarity=0.085  Sum_probs=104.0

Q ss_pred             CCCCccEEEecCCCCCCCCc-cccCCCCCCcEEeccCCcccch-hhhhhccCcccccccCCC---------CcCCCCCCC
Q psy8879         190 GLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLTVS-VVAALQGLRSVTDLDLSH---------NLLAGPLGP  258 (694)
Q Consensus       190 ~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L~~L~Ls~N~l~~~-~~~~~~~L~~L~~L~Ls~---------N~l~~~i~p  258 (694)
                      .+++|++|++++|.++.... ..+..+++|++|++++| +... .+.....+++|++|++.+         +.+++....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            46789999999888654322 23567888889988887 4322 233334577888887733         333211000


Q ss_pred             CCCCCccccceeeccCCccccccccccc-CCcccceeccc--C----Cccccccc-----hhhhcccccccccCCCCccc
Q psy8879         259 STVPRLSSLKVLSIAHNQFSSVRRGALA-GLDKLTSLSCH--H----NQIDVLED-----HSFRALSTLSHLDLAHNRIV  326 (694)
Q Consensus       259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~~~-~L~~L~~L~Ls--~----N~L~~i~~-----~~f~~l~~L~~L~Ls~N~L~  326 (694)
                      .....+++|+.|+++.|.++......+. .+++|++|+++  +    +.++..+.     ..+..+++|+.|+|++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence            0112356777777777776654433333 46677777776  3    44443221     1244556677777755 555


Q ss_pred             cccccchhc-ccccCeeecCCCCCCCcChhhh-CCCCCCCEEEccCCCCC
Q psy8879         327 AVSGASLAH-LSNLTTLDLSHNFLRALTQDLI-TPLKSLQELRLDDNDIS  374 (694)
Q Consensus       327 ~i~~~~f~~-l~~L~~L~Ls~N~L~~l~~~~~-~~l~~L~~L~Ls~N~L~  374 (694)
                      +.....+.. +++|+.|+|++|.+++.....+ ..+++|+.|+|++|+++
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            444444433 5666666666666654333222 44666666666666664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=6.1e-17  Score=190.76  Aligned_cols=181  Identities=23%  Similarity=0.208  Sum_probs=101.2

Q ss_pred             CCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCC
Q psy8879         183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP  262 (694)
Q Consensus       183 i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~  262 (694)
                      +++..|..+++|+.|+|++|.+..+++..+ .+++|++|+|++|.++ .+|..|.++++|++|+|++|.+. .+ |..+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l-p~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL-PAELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC-CSSGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc-Chhhc
Confidence            345567777777777777777776665543 6777777888777777 56677777778888888888777 34 66677


Q ss_pred             CccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccc-cccccCCCCccccccccchhcccccCe
Q psy8879         263 RLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST-LSHLDLAHNRIVAVSGASLAHLSNLTT  341 (694)
Q Consensus       263 ~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~-L~~L~Ls~N~L~~i~~~~f~~l~~L~~  341 (694)
                      .+++|++|+|++|.++.++.. |.++++|++|+|++|.|++.++..+..+.. +..|+|++|.+++..|.      .|+.
T Consensus       291 ~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~  363 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRF  363 (727)
T ss_dssp             GGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---
T ss_pred             CCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccce
Confidence            778888888888888777554 777888888888888887776666655432 23467788887776554      4555


Q ss_pred             eecCCC--------CCCCcChhhhCCCCCCCEEEccCCCCC
Q psy8879         342 LDLSHN--------FLRALTQDLITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       342 L~Ls~N--------~L~~l~~~~~~~l~~L~~L~Ls~N~L~  374 (694)
                      |+++.|        .+.+..+..+..+..+....++.|-+.
T Consensus       364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --------------------------------------CCC
T ss_pred             eEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            666666        333333444455556666667777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=150.11  Aligned_cols=127  Identities=23%  Similarity=0.357  Sum_probs=103.1

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .++|++++++.+|..+.  .+|++|++++|.|+.++ ..|.++. +|++|+|++|.|+.+++..|.++ ++|++|+|++|
T Consensus        14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYK-HLTLIDLSNNRISTLSNQSFSNM-TQLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCT-TCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSS
T ss_pred             EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhccc-CCCEEECCCCcCCEeCHhHccCC-CCCCEEECCCC
Confidence            47788888888887654  47888888888888777 4666654 48888888888888888888888 88888888888


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccc
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV  230 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~  230 (694)
                      .|+.+++..|.++++|++|+|++|+++.+++..|..+++|++|++++|.+..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            8888888888888888888888888888888778888888888888887764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=1.6e-15  Score=146.41  Aligned_cols=131  Identities=26%  Similarity=0.388  Sum_probs=108.5

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .+++++++++.+|..+.  ++|++|++++|.++.++...|.++. +|++|++++|.++.+++..|..+ ++|++|++++|
T Consensus        11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~N   86 (177)
T 2o6r_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKL-TKLTILYLHEN   86 (177)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSS
T ss_pred             EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCC-CccCEEECCCC
Confidence            46677778888876554  5788899988888888877776654 49999999999998888878888 89999999999


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhh
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVV  233 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~  233 (694)
                      .++++++..|.++++|++|++++|+++++++..|..+++|++|++++|.+.+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9988888888888999999999999988888878888889999999998876544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.64  E-value=2.2e-17  Score=188.74  Aligned_cols=158  Identities=15%  Similarity=0.093  Sum_probs=73.3

Q ss_pred             CCCCcEEeccCCcccchhh-hhhccCcccccccCCCCcCCCCCCCCCCCCccccceeecc---------CCccccccccc
Q psy8879         215 LVTLRVLRLQGNRLTVSVV-AALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA---------HNQFSSVRRGA  284 (694)
Q Consensus       215 L~~L~~L~Ls~N~l~~~~~-~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls---------~N~L~~i~~~~  284 (694)
                      +++|++|++++|.+++... ..+..+++|+.|++++| +.+...+.....+++|++|++.         .+.++......
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~  366 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS  366 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence            4566666666666543322 22445566666666655 2210001111234556666552         23333222111


Q ss_pred             c-cCCcccceecccCCccccccchhhh-cccccccccCC--C----Cccccccc-----cchhcccccCeeecCCCCCCC
Q psy8879         285 L-AGLDKLTSLSCHHNQIDVLEDHSFR-ALSTLSHLDLA--H----NRIVAVSG-----ASLAHLSNLTTLDLSHNFLRA  351 (694)
Q Consensus       285 ~-~~L~~L~~L~Ls~N~L~~i~~~~f~-~l~~L~~L~Ls--~----N~L~~i~~-----~~f~~l~~L~~L~Ls~N~L~~  351 (694)
                      + .++++|++|.+..|.++......+. .+++|+.|+++  +    |.+++.+.     ..+..+++|+.|+|++ .+++
T Consensus       367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~  445 (594)
T 2p1m_B          367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD  445 (594)
T ss_dssp             HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred             HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence            2 2355666666555555543333332 35566666665  3    34442211     1244556666666655 4443


Q ss_pred             cChhhhCC-CCCCCEEEccCCCCC
Q psy8879         352 LTQDLITP-LKSLQELRLDDNDIS  374 (694)
Q Consensus       352 l~~~~~~~-l~~L~~L~Ls~N~L~  374 (694)
                      .....+.. +++|+.|+|++|.++
T Consensus       446 ~~~~~l~~~~~~L~~L~L~~~~i~  469 (594)
T 2p1m_B          446 KVFEYIGTYAKKMEMLSVAFAGDS  469 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCCSS
T ss_pred             HHHHHHHHhchhccEeeccCCCCc
Confidence            32222322 556666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.63  E-value=1.3e-15  Score=163.01  Aligned_cols=105  Identities=24%  Similarity=0.284  Sum_probs=70.4

Q ss_pred             EEeccCC-cccchhhhhhccCcccccccCCC-CcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceeccc
Q psy8879         220 VLRLQGN-RLTVSVVAALQGLRSVTDLDLSH-NLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH  297 (694)
Q Consensus       220 ~L~Ls~N-~l~~~~~~~~~~L~~L~~L~Ls~-N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls  297 (694)
                      .++++++ +++. +|. +..+++|++|+|++ |.+.+ +++..|..+++|+.|+|++|+|+++++..|.++++|++|+|+
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4566666 6663 455 66667777777774 66664 435566777777777777777777776667777777777777


Q ss_pred             CCccccccchhhhcccccccccCCCCccccc
Q psy8879         298 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAV  328 (694)
Q Consensus       298 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i  328 (694)
                      +|+|+.+++..|..++ |+.|+|.+|.+...
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            7777777666666555 77777777776643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=2.7e-18  Score=196.58  Aligned_cols=120  Identities=27%  Similarity=0.300  Sum_probs=62.1

Q ss_pred             cccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCC
Q psy8879         242 VTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA  321 (694)
Q Consensus       242 L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls  321 (694)
                      |+.|++++|.+++ + |. +..+++|+.|+|++|.++.+|. .+.++++|+.|+|++|.|+.++  .|..+++|+.|+|+
T Consensus       443 L~~L~Ls~n~l~~-l-p~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLTV-L-CH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCSS-C-CC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCCC-C-cC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence            5555555555554 2 33 5555555555555555554432 4555555555555555555543  45555555555555


Q ss_pred             CCcccccc-ccchhcccccCeeecCCCCCCCcChh---hhCCCCCCCEEE
Q psy8879         322 HNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQD---LITPLKSLQELR  367 (694)
Q Consensus       322 ~N~L~~i~-~~~f~~l~~L~~L~Ls~N~L~~l~~~---~~~~l~~L~~L~  367 (694)
                      +|+|+++. |..+..+++|+.|+|++|.++++++.   .+..+++|+.|+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            55555554 45555555555555555555554431   122245555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=7.7e-16  Score=148.41  Aligned_cols=133  Identities=25%  Similarity=0.360  Sum_probs=116.4

Q ss_pred             ccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecC
Q psy8879         266 SLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLS  345 (694)
Q Consensus       266 ~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls  345 (694)
                      ..+.+++++|.++.++...   .++|++|+|++|+|+.+++..|.++++|++|+|++|+|+++++..|.++++|+.|+|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4578999999999887543   2789999999999999999899999999999999999999999999999999999999


Q ss_pred             CCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcc-cccccccccccc--c-----CCccCccccC
Q psy8879         346 HNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE-LIYSGVWRHSTL--L-----IPVMLSLCTR  413 (694)
Q Consensus       346 ~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~-l~~~~~wl~~~~--~-----~~~~~~~C~~  413 (694)
                      +|+|+++++..|..+++|+.|+|++|+|+            |+|. +.|+..|++...  +     .+...+.|..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~------------c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~  150 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD------------CACSDILYLSRWISQHPGLVFGYLNLDPDSARCSG  150 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC------------TTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC------------CCchhHHHHHHHHHhCcceeeccccCCcccceeCC
Confidence            99999999999999999999999999999            9995 999999996322  2     2345677864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=1.3e-15  Score=145.63  Aligned_cols=138  Identities=26%  Similarity=0.290  Sum_probs=110.3

Q ss_pred             CcccccccCCCCcCC-CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccc
Q psy8879         239 LRSVTDLDLSHNLLA-GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH  317 (694)
Q Consensus       239 L~~L~~L~Ls~N~l~-~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~  317 (694)
                      .++|+.|++++|.+. +.+ |..+..+++|+.|++++|.++++  ..+..+++|++|++++|.++...+..+..+++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            356777777777776 344 55577788888888888888877  56778888888888888888766667777888888


Q ss_pred             ccCCCCccccccc-cchhcccccCeeecCCCCCCCcCh---hhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879         318 LDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQ---DLITPLKSLQELRLDDNDISMEPEC  379 (694)
Q Consensus       318 L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~~---~~~~~l~~L~~L~Ls~N~L~~l~~~  379 (694)
                      |++++|++++++. ..+..+++|+.|++++|.++++++   ..+..+++|+.|++++|.+..+|..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            8888888888754 678888899999999999988887   5788889999999999988877653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=3.4e-16  Score=184.44  Aligned_cols=189  Identities=22%  Similarity=0.204  Sum_probs=112.8

Q ss_pred             EccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcc
Q psy8879         149 GLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL  228 (694)
Q Consensus       149 ~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l  228 (694)
                      ++..|.+. +++..|..+ +.|+.|+|++|.+..++...+ ++++|++|+|++|.|+.++ ..|..+++|++|+|++|++
T Consensus       207 ~~~~n~~~-~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDD-QLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             ----------------CC-CCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCC
T ss_pred             ccccccee-cChhhhccC-CCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcC
Confidence            33344444 445567777 889999999998888776544 7888999999999988664 5588889999999999998


Q ss_pred             cchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCc-ccceecccCCccccccch
Q psy8879         229 TVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLD-KLTSLSCHHNQIDVLEDH  307 (694)
Q Consensus       229 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~-~L~~L~Ls~N~L~~i~~~  307 (694)
                      + .+|..|.++++|++|+|++|.+.. + |..|..+++|+.|+|++|.+++.++..+..+. .+..|+|++|.++...+ 
T Consensus       283 ~-~lp~~~~~l~~L~~L~L~~N~l~~-l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-  358 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKYFYFFDNMVTT-L-PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-  358 (727)
T ss_dssp             S-SCCSSGGGGTTCSEEECCSSCCCC-C-CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_pred             C-ccChhhcCCCCCCEEECCCCCCCc-c-ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-
Confidence            8 568888889999999999998874 5 66689999999999999999988777665543 23447888998876554 


Q ss_pred             hhhcccccccccCCCC--------ccccccccchhcccccCeeecCCCCCC
Q psy8879         308 SFRALSTLSHLDLAHN--------RIVAVSGASLAHLSNLTTLDLSHNFLR  350 (694)
Q Consensus       308 ~f~~l~~L~~L~Ls~N--------~L~~i~~~~f~~l~~L~~L~Ls~N~L~  350 (694)
                           ..|+.|+++.|        .+.+..+..+..+..+....+++|-+.
T Consensus       359 -----~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          359 -----HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -----CC-----------------------------------------CCC
T ss_pred             -----cccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence                 34667777776        344444444555666666777777654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=2.6e-15  Score=145.34  Aligned_cols=119  Identities=26%  Similarity=0.396  Sum_probs=108.7

Q ss_pred             cceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCC
Q psy8879         267 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH  346 (694)
Q Consensus       267 L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~  346 (694)
                      -+.+++++|.++.++....   ++|++|+|++|+|+.+++..|.++++|+.|+|++|+|+++++..|.++++|+.|+|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            3678999999988876432   7899999999999999988999999999999999999999888899999999999999


Q ss_pred             CCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcc-cccccccccc
Q psy8879         347 NFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLE-LIYSGVWRHS  400 (694)
Q Consensus       347 N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~-l~~~~~wl~~  400 (694)
                      |+|+++++..|..+++|+.|+|++|+|.            |+|. +.|+..|+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~------------c~~~~~~~l~~~~~~  133 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD------------CECRDIMYLRNWVAD  133 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC------------TTBGGGHHHHHHHHH
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc------------cccccHHHHHHHHHh
Confidence            9999999988999999999999999999            9996 8999999863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=2.1e-17  Score=189.33  Aligned_cols=182  Identities=24%  Similarity=0.278  Sum_probs=134.6

Q ss_pred             CCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCc-------------ccchhhhhhccCccccccc-CCCCcCCCCC
Q psy8879         191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR-------------LTVSVVAALQGLRSVTDLD-LSHNLLAGPL  256 (694)
Q Consensus       191 L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~-------------l~~~~~~~~~~L~~L~~L~-Ls~N~l~~~i  256 (694)
                      +++|+.|+|++|+++.+ |..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+.. +
T Consensus       348 ~~~L~~L~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~-L  425 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD-L  425 (567)
T ss_dssp             TTTSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-H
T ss_pred             CccceeccCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-h
Confidence            44555555555555444 2334455555555554432             3455666777777777777 45443321 0


Q ss_pred             CC-----CCCCC--ccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcccccc
Q psy8879         257 GP-----STVPR--LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVS  329 (694)
Q Consensus       257 ~p-----~~~~~--l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~  329 (694)
                      ..     ..+..  ...|+.|+|++|.+++++.  +.++++|+.|+|++|.|+.+|. .|+.+++|+.|+|++|+|++++
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc
Confidence            00     00011  1258999999999999864  8999999999999999998865 7999999999999999999975


Q ss_pred             ccchhcccccCeeecCCCCCCCcC-hhhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879         330 GASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMEPEC  379 (694)
Q Consensus       330 ~~~f~~l~~L~~L~Ls~N~L~~l~-~~~~~~l~~L~~L~Ls~N~L~~l~~~  379 (694)
                        .+.++++|+.|+|++|+|++++ +..+..+++|+.|+|++|+++++|+.
T Consensus       503 --~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          503 --GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             --GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             --ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence              7899999999999999999997 77899999999999999999987764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=4.4e-15  Score=141.99  Aligned_cols=82  Identities=27%  Similarity=0.286  Sum_probs=37.0

Q ss_pred             CccEEEccCCCCC--CCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEE
Q psy8879         144 PLQALGLPNNLLS--VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVL  221 (694)
Q Consensus       144 ~L~~L~Ls~N~L~--~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L  221 (694)
                      +|++|++++|.++  .+|. .+..+ ++|++|++++|.++.+  ..|..+++|++|++++|++++..+..+..+++|++|
T Consensus        25 ~L~~L~l~~n~l~~~~i~~-~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEG-LTAEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSS-CCGGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cCCEEECCCCCCChhhHHH-HHHhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3555555555544  3333 23444 4455555555544444  334444444444444444444333333334444444


Q ss_pred             eccCCccc
Q psy8879         222 RLQGNRLT  229 (694)
Q Consensus       222 ~Ls~N~l~  229 (694)
                      ++++|+++
T Consensus       101 ~Ls~N~l~  108 (168)
T 2ell_A          101 NLSGNKLK  108 (168)
T ss_dssp             ECBSSSCC
T ss_pred             eccCCccC
Confidence            44444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.2e-14  Score=136.03  Aligned_cols=129  Identities=26%  Similarity=0.305  Sum_probs=91.5

Q ss_pred             CcccccccCCCCcCC-CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccc
Q psy8879         239 LRSVTDLDLSHNLLA-GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH  317 (694)
Q Consensus       239 L~~L~~L~Ls~N~l~-~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~  317 (694)
                      .++|+.|++++|.+. +.+ |..+..+++|+.|++++|.++++  ..+.++++|++|++++|.++...+..+..+++|+.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            356667777777666 334 45566677777777777777766  45677777777777777777755556666777888


Q ss_pred             ccCCCCcccccc-ccchhcccccCeeecCCCCCCCcCh---hhhCCCCCCCEEEccC
Q psy8879         318 LDLAHNRIVAVS-GASLAHLSNLTTLDLSHNFLRALTQ---DLITPLKSLQELRLDD  370 (694)
Q Consensus       318 L~Ls~N~L~~i~-~~~f~~l~~L~~L~Ls~N~L~~l~~---~~~~~l~~L~~L~Ls~  370 (694)
                      |++++|++++++ +..+..+++|+.|++++|.++++++   ..+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888888777763 3667777888888888888877776   5677777888877753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.52  E-value=7.1e-14  Score=152.50  Aligned_cols=261  Identities=17%  Similarity=0.267  Sum_probs=124.3

Q ss_pred             CeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          96 RVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      .|+.+.+.. +++.++. .|..+.+|+.+++.++ ++.|+..+|.+... |+.+.+..+ +..+...+|.+. ..++ +.
T Consensus        72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~-L~~i~~p~~-l~~i~~~aF~~~-~~~~-~~  145 (394)
T 4fs7_A           72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYA-LKSILLPLM-LKSIGVEAFKGC-DFKE-IT  145 (394)
T ss_dssp             TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT-CCCCCCCTT-CCEECTTTTTTC-CCSE-EE
T ss_pred             CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhccccc-chhhcccCc-eeeecceeeecc-cccc-cc
Confidence            677777753 4666643 3555677777777543 67777777766543 555554432 333333333332 1111 11


Q ss_pred             ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC-
Q psy8879         175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA-  253 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~-  253 (694)
                      + .+.+..+...+|.++++|+.+.+.++ +..+...+|.++.+|+.+.+..+ ++.+...+|.++..|+.+.+..+... 
T Consensus       146 ~-~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i  222 (394)
T 4fs7_A          146 I-PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL  222 (394)
T ss_dssp             C-CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE
T ss_pred             c-CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe
Confidence            1 11122233344455555555555432 33344444555555555554433 22223333444444443333222100 


Q ss_pred             -------------------CCCCCCCCCCccccceeeccCCcccccccccc---------------------cCCcccce
Q psy8879         254 -------------------GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGAL---------------------AGLDKLTS  293 (694)
Q Consensus       254 -------------------~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~---------------------~~L~~L~~  293 (694)
                                         ..+....+..+..|+.+.+..+. ..+....|                     .++.+|+.
T Consensus       223 ~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~  301 (394)
T 4fs7_A          223 GDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTE  301 (394)
T ss_dssp             CTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCE
T ss_pred             ehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeeccccccccccccc
Confidence                               01234455566666666665542 23333444                     44445555


Q ss_pred             ecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEcc
Q psy8879         294 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD  369 (694)
Q Consensus       294 L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls  369 (694)
                      +.+.++ ++.+...+|.++.+|+.++|.+ .++.+...+|.++.+|+.+++..| ++.+...+|.++++|+.+++.
T Consensus       302 i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          302 VKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             EEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             cccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            554332 4445555555555555555542 255555555555555555555444 555555555555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=1.3e-14  Score=135.94  Aligned_cols=83  Identities=22%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             CccEEEccCCCCC-CCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccC
Q psy8879         169 NLDRLDLSHNQLY-KLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL  247 (694)
Q Consensus       169 ~L~~L~Ls~N~L~-~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~L  247 (694)
                      +|++|++++|.++ +..+..+..+++|++|++++|.++++  ..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            3444444444444 11122344444444444444444444  23444444444444444444434444444444444444


Q ss_pred             CCCcCC
Q psy8879         248 SHNLLA  253 (694)
Q Consensus       248 s~N~l~  253 (694)
                      ++|.+.
T Consensus        96 s~N~i~  101 (149)
T 2je0_A           96 SGNKIK  101 (149)
T ss_dssp             TTSCCC
T ss_pred             CCCcCC
Confidence            444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=2.7e-14  Score=137.88  Aligned_cols=133  Identities=19%  Similarity=0.254  Sum_probs=78.8

Q ss_pred             ccCcccccccCCCCcCCCCCCCCCCCCc-cccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccc
Q psy8879         237 QGLRSVTDLDLSHNLLAGPLGPSTVPRL-SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL  315 (694)
Q Consensus       237 ~~L~~L~~L~Ls~N~l~~~i~p~~~~~l-~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L  315 (694)
                      ..+.+|+.|++++|.+.+ + +. +..+ ++|+.|++++|.++++  ..+.++++|++|++++|.|+.+++..|..+++|
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-I-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-C-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             CCcCCceEEEeeCCCCch-h-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            334455555555555543 2 22 2222 3666666666666655  345666666666666666666665555666666


Q ss_pred             ccccCCCCccccccc-cchhcccccCeeecCCCCCCCcChh---hhCCCCCCCEEEccCCCCC
Q psy8879         316 SHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQD---LITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       316 ~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~~~---~~~~l~~L~~L~Ls~N~L~  374 (694)
                      +.|++++|+++.++. ..+..+++|+.|++++|.++.++..   .+..+++|+.|++++|.+.
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            666666666666543 3556666667777777766665543   4556667777777666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=2.3e-13  Score=130.98  Aligned_cols=104  Identities=28%  Similarity=0.387  Sum_probs=62.3

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .++|++|+++.+|..+.  .+                         |++|+|++|.|+.+++..|.++ ++|++|+|++|
T Consensus        13 ~l~~s~n~l~~ip~~~~--~~-------------------------l~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N   64 (170)
T 3g39_A           13 TVDCSGKSLASVPTGIP--TT-------------------------TQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNN   64 (170)
T ss_dssp             EEECTTSCCSSCCSCCC--TT-------------------------CSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSS
T ss_pred             EEEeCCCCcCccCccCC--CC-------------------------CcEEEcCCCcCCccChhhhcCc-ccCCEEECCCC
Confidence            57778888877776542  34                         4555555555555555455555 55666666666


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccc
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTV  230 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~  230 (694)
                      +|+.+++..|.++++|++|+|++|++++++++.|..+++|++|+|++|.+..
T Consensus        65 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            6665555555566666666666666666655556666666666666665553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.46  E-value=3.9e-13  Score=146.62  Aligned_cols=264  Identities=15%  Similarity=0.252  Sum_probs=182.1

Q ss_pred             CCCCC-ccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCc
Q psy8879         107 VTVLP-GKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN  185 (694)
Q Consensus       107 l~~lp-~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~  185 (694)
                      ++.+. ..|..+.+|+++.+.. .++.|+..+|.+... |+.++|.++ ++.++..+|.++ .+|+.+.+.. .+..+..
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~-L~~i~lp~~-l~~I~~~aF~~c-~~L~~i~~p~-~l~~i~~  133 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSK-LEIINIPDS-VKMIGRCTFSGC-YALKSILLPL-MLKSIGV  133 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTT-CCEECCCTT-CCEECTTTTTTC-TTCCCCCCCT-TCCEECT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCC-CcEEEeCCC-ceEccchhhccc-ccchhhcccC-ceeeecc
Confidence            34443 3466778899999964 588999999988754 999999765 888888889888 8898887764 4677777


Q ss_pred             ccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCcc
Q psy8879         186 TSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLS  265 (694)
Q Consensus       186 ~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~  265 (694)
                      .+|.+...++...  .+.+..+...+|.++.+|+.+.+.++. .......|.++.+|+.+.+..+ +. .+....|.++.
T Consensus       134 ~aF~~~~~~~~~~--~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~  208 (394)
T 4fs7_A          134 EAFKGCDFKEITI--PEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECI  208 (394)
T ss_dssp             TTTTTCCCSEEEC--CTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCT
T ss_pred             eeeeccccccccc--CccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhcccc
Confidence            8888775543332  233456667889999999999998764 4466778999999999999877 33 25566777777


Q ss_pred             ccceeeccCCc---------------------ccccccccccCCcccceecccCCccc--------------------cc
Q psy8879         266 SLKVLSIAHNQ---------------------FSSVRRGALAGLDKLTSLSCHHNQID--------------------VL  304 (694)
Q Consensus       266 ~L~~L~Ls~N~---------------------L~~i~~~~~~~L~~L~~L~Ls~N~L~--------------------~i  304 (694)
                      .|+.+.+..+.                     ++.+....|.++..|+.+.+..+...                    .+
T Consensus       209 ~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i  288 (394)
T 4fs7_A          209 LLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV  288 (394)
T ss_dssp             TCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE
T ss_pred             ccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceee
Confidence            77766654432                     23344456677777777777654321                    12


Q ss_pred             cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879         305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG  383 (694)
Q Consensus       305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~  383 (694)
                      +..+|.++.+|+.+.+.++ ++.+...+|.++.+|+.++|.++ ++.+...+|.++.+|+.+++..| ++.++...|.+
T Consensus       289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence            3344555666666666543 66666677777777777777543 67777777777777777777655 66666666643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=9.1e-14  Score=134.18  Aligned_cols=105  Identities=24%  Similarity=0.328  Sum_probs=41.7

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhh--hhccCccccccc
Q psy8879         169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA--ALQGLRSVTDLD  246 (694)
Q Consensus       169 ~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~--~~~~L~~L~~L~  246 (694)
                      +|++|++++|.++++  ..|.++++|++|++++|+++++++..|..+++|++|++++|+++. .+.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence            344444444444333  233334444444444444443333333334444444444444432 121  333444444444


Q ss_pred             CCCCcCCCCCCCC----CCCCccccceeeccCCccc
Q psy8879         247 LSHNLLAGPLGPS----TVPRLSSLKVLSIAHNQFS  278 (694)
Q Consensus       247 Ls~N~l~~~i~p~----~~~~l~~L~~L~Ls~N~L~  278 (694)
                      +++|.+.. + +.    .+..+++|+.|++++|.+.
T Consensus       120 l~~N~i~~-~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          120 ILRNPVTN-K-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSSGGGG-S-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ecCCCCCC-c-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            44444432 1 22    1344444555555444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=5.5e-13  Score=128.95  Aligned_cols=103  Identities=21%  Similarity=0.364  Sum_probs=57.3

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .+++++++++.+|..+.  .+|+.|++++|.|+.+.+                         ..|.++ ++|++|+|++|
T Consensus        16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~-------------------------~~~~~l-~~L~~L~Ls~N   67 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEP-------------------------GVFDHL-VNLQQLYFNSN   67 (174)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCT-------------------------TTTTTC-TTCCEEECCSS
T ss_pred             EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCH-------------------------HHhcCC-cCCCEEECCCC
Confidence            57888888888876553  445555555555554444                         444444 45555555555


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCccc
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT  229 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~  229 (694)
                      +|+.+++..|.++++|++|+|++|+|+++++..|..+++|++|+|++|.+.
T Consensus        68 ~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           68 KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            555555444555555555555555555555544555555555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.41  E-value=4.2e-12  Score=138.42  Aligned_cols=264  Identities=13%  Similarity=0.226  Sum_probs=153.4

Q ss_pred             eeEEEcCCCCCCCCC-ccccCCCCccEEEccCC---CCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccE
Q psy8879          97 VSLLDCTLSNVTVLP-GKFLEGVTLHGLVISSG---ELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDR  172 (694)
Q Consensus        97 L~~Ldls~n~l~~lp-~~~~~~~~L~~L~Ls~n---~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~  172 (694)
                      |+.+.+.. .++.+. ..|..+.+|+.+.+..+   .++.|+..+|.+... |+.+.+..+ ++.++..+|..+ .+|+.
T Consensus        66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~-L~~i~~~~~-~~~I~~~aF~~c-~~L~~  141 (394)
T 4gt6_A           66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSE-LTDIPILDS-VTEIDSEAFHHC-EELDT  141 (394)
T ss_dssp             CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTT-CCBCGGGTT-CSEECTTTTTTC-TTCCE
T ss_pred             CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhccc-ceeeccCCc-cceehhhhhhhh-ccccc
Confidence            55555543 355553 34555667777777554   366666777766543 666665543 566666666666 67777


Q ss_pred             EEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcC
Q psy8879         173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLL  252 (694)
Q Consensus       173 L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l  252 (694)
                      +.+.. .+..+....|.++.+|+.+.+.++ ++.+...+|.. .+|+.+.+..+-.. ....+|.++.++.......+..
T Consensus       142 i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~  217 (394)
T 4gt6_A          142 VTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESY  217 (394)
T ss_dssp             EECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSS
T ss_pred             ccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccccccc
Confidence            77753 355566666777777777776543 55555555654 45666666543221 2333444444443332221111


Q ss_pred             C-----------------------------------CCCCCCCCCCccccceeeccCCcccccccccccCCcccceeccc
Q psy8879         253 A-----------------------------------GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCH  297 (694)
Q Consensus       253 ~-----------------------------------~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls  297 (694)
                      .                                   ..+....|..+.+|+.+.+..+ +..+...+|.++++|+.+.+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~  296 (394)
T 4gt6_A          218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS  296 (394)
T ss_dssp             CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred             ccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC
Confidence            0                                   0122445566666666666543 344555666666677766664


Q ss_pred             CCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCC
Q psy8879         298 HNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND  372 (694)
Q Consensus       298 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~  372 (694)
                       +.++.++..+|.++.+|+.++|..+ ++.+...+|.+|.+|+.+.|..+ ++.+...+|.++++|+.+++.+|.
T Consensus       297 -~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          297 -SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             -TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             -CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence             4566666667777777777777543 66666667777777777777543 666666677777777777766653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=2.8e-15  Score=147.70  Aligned_cols=132  Identities=26%  Similarity=0.333  Sum_probs=82.8

Q ss_pred             hhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccc
Q psy8879         235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALST  314 (694)
Q Consensus       235 ~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~  314 (694)
                      .+..+++|++|++++|.+.+ + | .+..+++|+.|++++|.++.++. .+..+++|++|++++|+++.++  .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l-~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-I-S-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-C-C-CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-c-c-ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCC
Confidence            56666666666666666665 3 3 56666666666666666665542 3445566777777777766654  4666677


Q ss_pred             cccccCCCCccccccc-cchhcccccCeeecCCCCCCCcCh----------hhhCCCCCCCEEEccCCCCC
Q psy8879         315 LSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQ----------DLITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       315 L~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~~----------~~~~~l~~L~~L~Ls~N~L~  374 (694)
                      |+.|++++|++++++. ..+..+++|+.|++++|.+.+..+          ..+..+++|+.||  +|+++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            7777777777766543 456666777777777776655432          2355677777765  55554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=3.1e-15  Score=147.36  Aligned_cols=132  Identities=26%  Similarity=0.308  Sum_probs=74.5

Q ss_pred             cCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCccc
Q psy8879         212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL  291 (694)
Q Consensus       212 f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L  291 (694)
                      |..+++|++|++++|++++ +| .+.++++|++|++++|.+.+ + |..+..+++|+.|++++|++++++  .+.++++|
T Consensus        44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L  117 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-I-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL  117 (198)
T ss_dssp             HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-C-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred             HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-c-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence            4444444444444444443 22 44444455555555555542 2 334444556666666666666653  35566666


Q ss_pred             ceecccCCccccccc-hhhhcccccccccCCCCcccccccc----------chhcccccCeeecCCCCCCC
Q psy8879         292 TSLSCHHNQIDVLED-HSFRALSTLSHLDLAHNRIVAVSGA----------SLAHLSNLTTLDLSHNFLRA  351 (694)
Q Consensus       292 ~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~i~~~----------~f~~l~~L~~L~Ls~N~L~~  351 (694)
                      ++|++++|+++.++. ..+..+++|+.|++++|++.+..+.          .+..+++|+.||  +|.++.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            666666666665543 4566666777777777776555433          366777888776  555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.35  E-value=1e-11  Score=135.33  Aligned_cols=263  Identities=13%  Similarity=0.279  Sum_probs=199.5

Q ss_pred             CCCCcc-ccCCC-CccEEEccCCCCCCCCcchhcCCCCCccEEEccCCC---CCCCCccccccCCCCccEEEccCCCCCC
Q psy8879         108 TVLPGK-FLEGV-TLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNL---LSVVPTSALAPLAPNLDRLDLSHNQLYK  182 (694)
Q Consensus       108 ~~lp~~-~~~~~-~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~---L~~lp~~~~~~l~~~L~~L~Ls~N~L~~  182 (694)
                      +.+.+. |..+. .|+++.+.. .++.|+..+|.+... |+.+.+..|.   ++.+...+|.++ .+|+.+.+..+ ++.
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~-L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTS-LKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS-VTE  127 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTT-CCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT-CSE
T ss_pred             eEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCcc-CceEeecCCCCCeeeEechhhchhc-ccceeeccCCc-cce
Confidence            344433 44443 599999965 489999999988764 9999998764   888889999998 89998888654 788


Q ss_pred             CCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCC
Q psy8879         183 LENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVP  262 (694)
Q Consensus       183 i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~  262 (694)
                      +...+|.++.+|+.+.+.. .+..+...+|..+.+|+.+.+.++ ++.+...+|.. ..|+.+.+..+...  +....|.
T Consensus       128 I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~--i~~~af~  202 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR--IGTNAFS  202 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE--ECTTTTT
T ss_pred             ehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc--cccchhh
Confidence            8888999999999999964 467788888999999999999765 44455566754 57888887665432  3355566


Q ss_pred             CccccceeeccCC------------------------------------cccccccccccCCcccceecccCCccccccc
Q psy8879         263 RLSSLKVLSIAHN------------------------------------QFSSVRRGALAGLDKLTSLSCHHNQIDVLED  306 (694)
Q Consensus       263 ~l~~L~~L~Ls~N------------------------------------~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~  306 (694)
                      .+.+++......+                                    .++.+...+|.++.+|+.+.+.++ +..+..
T Consensus       203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~  281 (394)
T 4gt6_A          203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGT  281 (394)
T ss_dssp             TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECT
T ss_pred             hccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecC
Confidence            6666555443222                                    233344557788888888888654 456777


Q ss_pred             hhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879         307 HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG  383 (694)
Q Consensus       307 ~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~  383 (694)
                      .+|.+++.|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+.. .++.++...|.+
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~  355 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSN  355 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTT
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhC
Confidence            888888999998885 5688888889999999999999764 8888888899999999999964 488888888854

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.31  E-value=5e-11  Score=128.84  Aligned_cols=272  Identities=15%  Similarity=0.210  Sum_probs=182.4

Q ss_pred             CeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEE
Q psy8879          96 RVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLD  174 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~  174 (694)
                      +|+.+.+. .+++.+++ .|..+.+|+++.|.. .++.|+..+|.+.  +|+.+.+.. .++.+...+|...  +|+.+.
T Consensus        47 ~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c--~l~~i~~~~-~l~~I~~~aF~~~--~L~~i~  119 (379)
T 4h09_A           47 RISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT--KLQSYTGME-RVKKFGDYVFQGT--DLDDFE  119 (379)
T ss_dssp             GCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC--CCCEEEECT-TCCEECTTTTTTC--CCSEEE
T ss_pred             CCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC--CCceEECCc-eeeEeccceeccC--Cccccc
Confidence            45555554 34555543 355667777777753 3777777777764  377776654 3666666666653  677777


Q ss_pred             ccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCccc-------------------------
Q psy8879         175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT-------------------------  229 (694)
Q Consensus       175 Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~-------------------------  229 (694)
                      +..+ ++.+....|.+. +|+.+.+.. .++.+...+|....+++.+.+..+...                         
T Consensus       120 lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (379)
T 4h09_A          120 FPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG  196 (379)
T ss_dssp             CCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred             CCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence            7543 445555555543 455554433 244455555555555555544432211                         


Q ss_pred             ----------chhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCC
Q psy8879         230 ----------VSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN  299 (694)
Q Consensus       230 ----------~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N  299 (694)
                                ......+....+|+.+.+..+- . .+....+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+.. 
T Consensus       197 ~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-  272 (379)
T 4h09_A          197 TEFTIPSTVKTVTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-  272 (379)
T ss_dssp             SEEECCTTCCEECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-
T ss_pred             cccccccceeEEeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-
Confidence                      1223344445566666665442 2 244667778888888888765 7778888888888888888864 


Q ss_pred             ccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcc
Q psy8879         300 QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPEC  379 (694)
Q Consensus       300 ~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~  379 (694)
                      .+..++..+|.++++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+...+|.++++|+.+.+..+ ++.|...
T Consensus       273 ~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~  350 (379)
T 4h09_A          273 KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESG  350 (379)
T ss_dssp             CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchh
Confidence            477888888999999999999888888888888999999999998754 88888888988999998888654 7778877


Q ss_pred             cccC
Q psy8879         380 IYVG  383 (694)
Q Consensus       380 ~f~~  383 (694)
                      .|.+
T Consensus       351 aF~~  354 (379)
T 4h09_A          351 AFEG  354 (379)
T ss_dssp             TTTT
T ss_pred             HhhC
Confidence            7744

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=1.6e-12  Score=141.14  Aligned_cols=167  Identities=20%  Similarity=0.200  Sum_probs=114.7

Q ss_pred             CCCccEEEecCCCCCCCCccccCC-----CCCCcEEeccCCcccchhhhhh-ccCcccccccCCCCcCCCCCCCCCC---
Q psy8879         191 LSSLNFLDLSYNKLMTLSQDCLAP-----LVTLRVLRLQGNRLTVSVVAAL-QGLRSVTDLDLSHNLLAGPLGPSTV---  261 (694)
Q Consensus       191 L~~L~~L~Ls~N~l~~i~~~~f~~-----L~~L~~L~Ls~N~l~~~~~~~~-~~L~~L~~L~Ls~N~l~~~i~p~~~---  261 (694)
                      ++.|++|+|++|.++......+..     .++|++|+|++|.++......+ ..+.+|+.|+|++|.+.+. ....+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHH
Confidence            357889999999988655443332     2689999999999875544433 3466888999999988632 11222   


Q ss_pred             --CCccccceeeccCCcccccccc----cccCCcccceecccCCcccccc----chhhhcccccccccCCCCcccccccc
Q psy8879         262 --PRLSSLKVLSIAHNQFSSVRRG----ALAGLDKLTSLSCHHNQIDVLE----DHSFRALSTLSHLDLAHNRIVAVSGA  331 (694)
Q Consensus       262 --~~l~~L~~L~Ls~N~L~~i~~~----~~~~L~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~~  331 (694)
                        ...++|++|+|++|.++.....    .+..+++|++|+|++|.|+...    ...+...++|+.|+|++|.|++....
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              2356788888888888764322    3456778888888888887543    33456667888888888888765443


Q ss_pred             c----hhcccccCeeecCCCCCCCcChhhhC
Q psy8879         332 S----LAHLSNLTTLDLSHNFLRALTQDLIT  358 (694)
Q Consensus       332 ~----f~~l~~L~~L~Ls~N~L~~l~~~~~~  358 (694)
                      .    +...++|++|+|++|.|+......+.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            3    34567888888888888765554443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=9.5e-13  Score=142.87  Aligned_cols=168  Identities=22%  Similarity=0.217  Sum_probs=116.1

Q ss_pred             CCccEEEccCCCCCCCCcccccC-----CCCccEEEecCCCCCCCCcccc-CCCCCCcEEeccCCcccchhhhhh-----
Q psy8879         168 PNLDRLDLSHNQLYKLENTSFKG-----LSSLNFLDLSYNKLMTLSQDCL-APLVTLRVLRLQGNRLTVSVVAAL-----  236 (694)
Q Consensus       168 ~~L~~L~Ls~N~L~~i~~~~f~~-----L~~L~~L~Ls~N~l~~i~~~~f-~~L~~L~~L~Ls~N~l~~~~~~~~-----  236 (694)
                      ++|++|+|++|.++......+..     .++|++|+|++|.++......+ ..+++|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            67888999888887654444332     2688889999888865433322 235678889999988876544444     


Q ss_pred             ccCcccccccCCCCcCCCC----CCCCCCCCccccceeeccCCcccccc----cccccCCcccceecccCCccccccch-
Q psy8879         237 QGLRSVTDLDLSHNLLAGP----LGPSTVPRLSSLKVLSIAHNQFSSVR----RGALAGLDKLTSLSCHHNQIDVLEDH-  307 (694)
Q Consensus       237 ~~L~~L~~L~Ls~N~l~~~----i~p~~~~~l~~L~~L~Ls~N~L~~i~----~~~~~~L~~L~~L~Ls~N~L~~i~~~-  307 (694)
                      ...++|++|+|++|.+++.    + +..+..+++|++|+|++|.+++..    ...+...++|++|+|++|.|+..... 
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVL-MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHH-HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHH-HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence            2457788899998887531    1 222355678888999998887643    33456677888999999888754432 


Q ss_pred             ---hhhcccccccccCCCCccccccccchhcc
Q psy8879         308 ---SFRALSTLSHLDLAHNRIVAVSGASLAHL  336 (694)
Q Consensus       308 ---~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l  336 (694)
                         .+...++|+.|+|++|.|+......+..+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~  262 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL  262 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence               34456888899999998887766655543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.16  E-value=5.9e-10  Score=120.42  Aligned_cols=256  Identities=12%  Similarity=0.188  Sum_probs=196.5

Q ss_pred             ccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCC
Q psy8879         114 FLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSS  193 (694)
Q Consensus       114 ~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~  193 (694)
                      +....+|+++.+. ..++.|+..+|.+... |+.+.|..+ ++.+...+|.+.  +|+.+.+.. .++.+...+|.+. +
T Consensus        42 ~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~-L~~I~lp~~-v~~Ig~~aF~~c--~l~~i~~~~-~l~~I~~~aF~~~-~  114 (379)
T 4h09_A           42 YKDRDRISEVRVN-SGITSIGEANFNSCYN-MTKVTVAST-VTSIGDGAFADT--KLQSYTGME-RVKKFGDYVFQGT-D  114 (379)
T ss_dssp             GGGGGGCSEEEEC-TTEEEECTTTTTTCTT-CCEEEECTT-CCEECTTTTTTC--CCCEEEECT-TCCEECTTTTTTC-C
T ss_pred             cccccCCEEEEeC-CCccChHHHHhhCCCC-CCEEEeCCc-ceEechhhhcCC--CCceEECCc-eeeEeccceeccC-C
Confidence            4445679999996 4589999999998764 999999754 899999999986  688888864 4788888889775 8


Q ss_pred             ccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCC--------------------
Q psy8879         194 LNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLA--------------------  253 (694)
Q Consensus       194 L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~--------------------  253 (694)
                      |+.+.+.++ +..+...+|... +|+.+.+..+ ++......|....+++.+.+..+...                    
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP  191 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred             cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence            999999764 666777777764 6777766554 33344556666666665554432210                    


Q ss_pred             --------------CCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccccccc
Q psy8879         254 --------------GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLD  319 (694)
Q Consensus       254 --------------~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~  319 (694)
                                    ..+....+..+.+|+.+.+..+ +..+....|.++..|+.+.+..+ ++.+...+|.++.+|+.+.
T Consensus       192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~  269 (379)
T 4h09_A          192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN  269 (379)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence                          0112334555667777777544 66777788899999999999765 8888889999999999999


Q ss_pred             CCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccC
Q psy8879         320 LAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVG  383 (694)
Q Consensus       320 Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~  383 (694)
                      +.. .+..+...+|.++.+|+.+.+.++.++.+....|.++.+|+.+.|.. .++.|+...|.+
T Consensus       270 l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~  331 (379)
T 4h09_A          270 FYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKN  331 (379)
T ss_dssp             ECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred             ccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhC
Confidence            965 48888888999999999999999999999999999999999999975 488888888853

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.70  E-value=1.3e-08  Score=93.50  Aligned_cols=89  Identities=21%  Similarity=0.275  Sum_probs=70.6

Q ss_pred             ccccCCCCccc--cccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccc
Q psy8879         316 SHLDLAHNRIV--AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIY  393 (694)
Q Consensus       316 ~~L~Ls~N~L~--~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~  393 (694)
                      ..++.+++.++  .++.. +.  ++|+.|+|++|+|+.++.+.|..+++|+.|+|++|+|.            |||++.|
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~------------CdC~l~~   75 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-FP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR------------CDCRLVP   75 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-CC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB------------CSGGGHH
T ss_pred             CEEEeCCCCCccccCCCC-CC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee------------ccCccHH
Confidence            35677777777  66432 22  47899999999999999999999999999999999999            9999999


Q ss_pred             ccccccccc-cCCccCccccCCcccce
Q psy8879         394 SGVWRHSTL-LIPVMLSLCTRSSVVTR  419 (694)
Q Consensus       394 ~~~wl~~~~-~~~~~~~~C~~~~~~~~  419 (694)
                      |..|+.... ......+.|++|....+
T Consensus        76 l~~wl~~~~~~~~~~~~~C~~P~~l~g  102 (130)
T 3rfe_A           76 LRAWLAGRPERAPYRDLRCVAPPALRG  102 (130)
T ss_dssp             HHHHHHTSSCSGGGTTCBCCBSTTTTT
T ss_pred             HHHHHHhCcccccccCcEeCcChHHcC
Confidence            999997543 22345789988765444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=2.7e-08  Score=107.36  Aligned_cols=59  Identities=20%  Similarity=0.254  Sum_probs=36.5

Q ss_pred             cccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhc--cCcccccccCC
Q psy8879         187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQ--GLRSVTDLDLS  248 (694)
Q Consensus       187 ~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~--~L~~L~~L~Ls  248 (694)
                      .+..+|+|+.|+|++|.-..+++  +. +++|++|++..+.+.......+.  .+++|+.|+|+
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            34566778888887763112222  32 67888888887777654444443  56777777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=4.6e-08  Score=105.47  Aligned_cols=63  Identities=22%  Similarity=0.276  Sum_probs=30.4

Q ss_pred             ccccccccCCCCccccccccchh---cccccCeeecCCCCCCCcChhh----hCCCCCCCEEEccCCCCC
Q psy8879         312 LSTLSHLDLAHNRIVAVSGASLA---HLSNLTTLDLSHNFLRALTQDL----ITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       312 l~~L~~L~Ls~N~L~~i~~~~f~---~l~~L~~L~Ls~N~L~~l~~~~----~~~l~~L~~L~Ls~N~L~  374 (694)
                      +++|+.|+|.+|.+.+.....+.   .+++|+.|+|+.|.+.+.....    +..+++|+.|+|++|.|+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            45555566555555432222221   2455666666666555422111    123455666666665554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.15  E-value=5.9e-07  Score=87.25  Aligned_cols=89  Identities=12%  Similarity=0.087  Sum_probs=47.2

Q ss_pred             cCCcccceecccCCcccccc----chhhhcccccccccCCCCcccccc----ccchhcccccCeeec--CCCCCCCcC--
Q psy8879         286 AGLDKLTSLSCHHNQIDVLE----DHSFRALSTLSHLDLAHNRIVAVS----GASLAHLSNLTTLDL--SHNFLRALT--  353 (694)
Q Consensus       286 ~~L~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~L--s~N~L~~l~--  353 (694)
                      ...++|++|+|++|.|+...    ...+...+.|++|+|++|.|....    ...+...++|+.|+|  ++|.+....  
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            33445555555555554322    122333455666666666665532    233444566777777  666665432  


Q ss_pred             --hhhhCCCCCCCEEEccCCCCC
Q psy8879         354 --QDLITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       354 --~~~~~~l~~L~~L~Ls~N~L~  374 (694)
                        .+.+...++|+.|+|++|.+.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCC
Confidence              233444566777777776654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.14  E-value=2.6e-07  Score=95.26  Aligned_cols=120  Identities=19%  Similarity=0.186  Sum_probs=71.0

Q ss_pred             cCCCCcCCCCCCCCCCCCccccce--eeccCCcccccc---cccccCCcccceecccCCccccccc--hhhhcccccccc
Q psy8879         246 DLSHNLLAGPLGPSTVPRLSSLKV--LSIAHNQFSSVR---RGALAGLDKLTSLSCHHNQIDVLED--HSFRALSTLSHL  318 (694)
Q Consensus       246 ~Ls~N~l~~~i~p~~~~~l~~L~~--L~Ls~N~L~~i~---~~~~~~L~~L~~L~Ls~N~L~~i~~--~~f~~l~~L~~L  318 (694)
                      ...+|...+.++...+...+.|..  ++++.|....+.   .....++++|+.|+|++|+|+.++.  ..+..+++|+.|
T Consensus       122 ~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L  201 (267)
T 3rw6_A          122 SKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL  201 (267)
T ss_dssp             HHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEE
T ss_pred             HhccchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEE
Confidence            334444444333344555556665  666666443332   1122456777888888887777653  455677788888


Q ss_pred             cCCCCccccccccchhccc--ccCeeecCCCCCCC-cC------hhhhCCCCCCCEEE
Q psy8879         319 DLAHNRIVAVSGASLAHLS--NLTTLDLSHNFLRA-LT------QDLITPLKSLQELR  367 (694)
Q Consensus       319 ~Ls~N~L~~i~~~~f~~l~--~L~~L~Ls~N~L~~-l~------~~~~~~l~~L~~L~  367 (694)
                      +|++|+|+++.  .+..+.  +|++|+|++|.+.+ ++      ...+..+++|+.||
T Consensus       202 ~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          202 NLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSCCCSGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ECCCCccCCch--hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            88888877762  233333  77788888887764 22      13355677777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.00  E-value=8.5e-07  Score=86.10  Aligned_cols=120  Identities=14%  Similarity=0.087  Sum_probs=58.5

Q ss_pred             cccCCCCCCcEEeccCC-cccch----hhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCccccccccc
Q psy8879         210 DCLAPLVTLRVLRLQGN-RLTVS----VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGA  284 (694)
Q Consensus       210 ~~f~~L~~L~~L~Ls~N-~l~~~----~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~  284 (694)
                      ..+...++|++|+|++| .+...    +...+...++|++|+|++|.+.+.- ..                    .....
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g-~~--------------------~l~~~   88 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV-AF--------------------ALAEM   88 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH-HH--------------------HHHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH-HH--------------------HHHHH
Confidence            34556677777777777 66542    2233344455555555555553210 00                    00112


Q ss_pred             ccCCcccceecccCCcccccc----chhhhcccccccccC--CCCccccccc----cchhcccccCeeecCCCCCC
Q psy8879         285 LAGLDKLTSLSCHHNQIDVLE----DHSFRALSTLSHLDL--AHNRIVAVSG----ASLAHLSNLTTLDLSHNFLR  350 (694)
Q Consensus       285 ~~~L~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~L--s~N~L~~i~~----~~f~~l~~L~~L~Ls~N~L~  350 (694)
                      +...++|++|+|++|.|+...    ...+...+.|++|+|  ++|.|.....    ..+...++|+.|+|++|.+.
T Consensus        89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            223344555555555554321    123344455666666  5566554322    22334466666666666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.80  E-value=9e-06  Score=83.66  Aligned_cols=89  Identities=27%  Similarity=0.353  Sum_probs=67.7

Q ss_pred             ccCCcccce--ecccCCcccccc---chhhhcccccccccCCCCccccccc--cchhcccccCeeecCCCCCCCcCh-hh
Q psy8879         285 LAGLDKLTS--LSCHHNQIDVLE---DHSFRALSTLSHLDLAHNRIVAVSG--ASLAHLSNLTTLDLSHNFLRALTQ-DL  356 (694)
Q Consensus       285 ~~~L~~L~~--L~Ls~N~L~~i~---~~~f~~l~~L~~L~Ls~N~L~~i~~--~~f~~l~~L~~L~Ls~N~L~~l~~-~~  356 (694)
                      |...+.|..  ++++.|....+.   .....++++|+.|+|++|+|+++.+  ..+..+++|+.|+|++|+|+++.. ..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            445566666  777888654433   2233568999999999999999754  567789999999999999998732 23


Q ss_pred             hCCCCCCCEEEccCCCCC
Q psy8879         357 ITPLKSLQELRLDDNDIS  374 (694)
Q Consensus       357 ~~~l~~L~~L~Ls~N~L~  374 (694)
                      +..+ +|++|+|++|++.
T Consensus       217 l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          217 IKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             GTTS-CCSEEECTTSTTG
T ss_pred             cccC-CcceEEccCCcCc
Confidence            3334 9999999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.60  E-value=3.5e-05  Score=74.11  Aligned_cols=33  Identities=12%  Similarity=0.273  Sum_probs=14.3

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      |+.||++++.++...-..+.++ ++|++|+|++|
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~-~~L~~L~L~~C   95 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGL-QYVEKIRLCKC   95 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTC-SCCCEEEEESC
T ss_pred             EeEEeCcCCCccHHHHHHhcCC-CCCCEEEeCCC
Confidence            4444444444443333333333 44444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.55  E-value=3.8e-05  Score=73.82  Aligned_cols=84  Identities=14%  Similarity=0.150  Sum_probs=50.8

Q ss_pred             cccceeeccCCcccccccccccCCcccceecccCCc-cccccchhhhcc----cccccccCCCCc-cccccccchhcccc
Q psy8879         265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ-IDVLEDHSFRAL----STLSHLDLAHNR-IVAVSGASLAHLSN  338 (694)
Q Consensus       265 ~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~-L~~i~~~~f~~l----~~L~~L~Ls~N~-L~~i~~~~f~~l~~  338 (694)
                      .+|+.||++++.++...-..+.++++|++|+|++|. |+...-..+..+    ++|++|+|++|. |++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            367777777777766554556677777777777763 544333333332    356677776653 65554455556666


Q ss_pred             cCeeecCCCC
Q psy8879         339 LTTLDLSHNF  348 (694)
Q Consensus       339 L~~L~Ls~N~  348 (694)
                      |+.|+|+++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.76  E-value=0.0021  Score=58.50  Aligned_cols=54  Identities=22%  Similarity=0.239  Sum_probs=26.1

Q ss_pred             EEEccCCCCC--CCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCC
Q psy8879         147 ALGLPNNLLS--VVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL  204 (694)
Q Consensus       147 ~L~Ls~N~L~--~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l  204 (694)
                      .++.+++.++  .+|..    ++++|++|+|++|+|+.++...|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~----lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA----FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSC----CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCC----CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4444555554  44432    113455555555555555555555555555555554443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.69  E-value=0.0012  Score=64.58  Aligned_cols=88  Identities=14%  Similarity=0.071  Sum_probs=49.1

Q ss_pred             ccCCcccceecccCCccccccc----hhhhcccccccccCCCCcccccccc----chhcccccCeeecCCCCCCCcC---
Q psy8879         285 LAGLDKLTSLSCHHNQIDVLED----HSFRALSTLSHLDLAHNRIVAVSGA----SLAHLSNLTTLDLSHNFLRALT---  353 (694)
Q Consensus       285 ~~~L~~L~~L~Ls~N~L~~i~~----~~f~~l~~L~~L~Ls~N~L~~i~~~----~f~~l~~L~~L~Ls~N~L~~l~---  353 (694)
                      +..-..|++|+|++|.|.....    .++..-+.|+.|+|++|.|......    ++..-..|+.|+|++|....+.   
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            4444566666666666653322    2334456677777777777654332    2334456777777755331221   


Q ss_pred             ----hhhhCCCCCCCEEEccCCC
Q psy8879         354 ----QDLITPLKSLQELRLDDND  372 (694)
Q Consensus       354 ----~~~~~~l~~L~~L~Ls~N~  372 (694)
                          .+.+...+.|+.|+++.|.
T Consensus       146 ~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          146 EMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCcCeEeccCCC
Confidence                2345556777777777654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=96.67  E-value=0.0024  Score=62.38  Aligned_cols=68  Identities=13%  Similarity=0.055  Sum_probs=44.3

Q ss_pred             cccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE----EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         432 ILDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV----QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       432 ~~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL----~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ..++....+.|.+       +.|..+++... .......++.+..+|++    +.+++.+|+|.|+|.|+|..++++.++
T Consensus       118 v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~-~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v~  196 (203)
T 4fa8_A          118 FPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP-APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVY  196 (203)
T ss_dssp             SSCSCCEEEEEEEEEESCCEEEECCC-------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEEE
T ss_pred             EcCCCEEEEEEEcCCCCCCEEEEEECCeeec-CcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence            3445556788876       66666555443 22234567778888887    468999999999999999999987665

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=96.42  E-value=0.0036  Score=55.19  Aligned_cols=36  Identities=6%  Similarity=-0.214  Sum_probs=31.5

Q ss_pred             EeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         461 TSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       461 ~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      .+.|..+..+|+| |.+|+.+|+|.|+|++.+..+..
T Consensus        62 ~~gR~~~~~ngSL~I~nvt~~D~G~Ytc~v~~~~~~~   98 (111)
T 2qsq_A           62 YSGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVN   98 (111)
T ss_dssp             CCSCEEECTTSCEEECSCCGGGCEEEEEEEEETTSCC
T ss_pred             cCCcEEEecCCcEEEccCcccCCeEEEEEEEeCCCcE
Confidence            4678888999988 99999999999999999986643

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=96.42  E-value=0.0018  Score=55.54  Aligned_cols=29  Identities=17%  Similarity=-0.080  Sum_probs=24.6

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +| |.+++..|+|.|+|.|+|..+.+...+
T Consensus        64 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   93 (100)
T 3knb_A           64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATV   93 (100)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEcCCCccCCEEEEEEEEECCCEEEEEE
Confidence            56 899999999999999999888765443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=96.17  E-value=0.0025  Score=55.48  Aligned_cols=61  Identities=7%  Similarity=-0.173  Sum_probs=38.9

Q ss_pred             cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecc---cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGL---GTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~---gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ++....+.|..       +.|...........     ++.+..+   .+| |.+++.+|+|.|+|.|+|..+.+...
T Consensus        27 ~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   98 (107)
T 3knb_B           27 SGAEAELKCVVLGEPPPVVVWEKGGQQLAASE-----RLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAA   98 (107)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCCS-----SEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEEEEEecCCEEEEEECccccccee-----eEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEE
Confidence            34455666655       56665554444222     2222222   245 99999999999999999988776544

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=96.03  E-value=0.0057  Score=51.38  Aligned_cols=29  Identities=3%  Similarity=-0.375  Sum_probs=24.4

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +| |.+++..|+|.|+|.|+|..+......
T Consensus        63 ~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   92 (99)
T 1g1c_A           63 ELVIRDVTGEDSASIMVKAINIAGETSSHA   92 (99)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCcCCCEEEEEEEEECCCcEEEEE
Confidence            56 899999999999999999887665543

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=95.93  E-value=0.0073  Score=53.01  Aligned_cols=27  Identities=7%  Similarity=-0.346  Sum_probs=23.5

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      +| |.+|+.+|+|.|+|.|+|..+....
T Consensus        74 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  101 (116)
T 2kkq_A           74 TLLIKDVNKKDAGWYTVSAVNEAGVTTC  101 (116)
T ss_dssp             EEEEEEECGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCCeEEE
Confidence            56 9999999999999999998876544

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.84  E-value=0.0063  Score=51.36  Aligned_cols=61  Identities=18%  Similarity=0.127  Sum_probs=40.1

Q ss_pred             eeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ....+.|..       +.|.........    ...+..+..+++| |.+++..|+|.|+|.++|..+.....+
T Consensus        24 ~~~~l~C~~~g~p~p~v~W~~~~~~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~   92 (100)
T 2edj_A           24 GTALLKCKATGDPLPVISWLKEGFTFPG----RDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSA   92 (100)
T ss_dssp             SEEEECCEEECSSCCEEEEEESSSEESS----SCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCE
T ss_pred             CcEEEEEEEEEcCCCEEEEEECCEECCC----CCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEE
Confidence            444556654       566655433321    1233455667778 999999999999999999877654433

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=95.76  E-value=0.0052  Score=51.84  Aligned_cols=33  Identities=6%  Similarity=-0.156  Sum_probs=26.6

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .++| |.+++..|+|.|+|.|+|..+.....+..
T Consensus        64 ~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   97 (100)
T 3caf_A           64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   97 (100)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEE
Confidence            4466 89999999999999999988876554443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.75  E-value=0.0064  Score=59.33  Aligned_cols=89  Identities=13%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             ccCCcccceecccCC-cccccc----chhhhcccccccccCCCCccccccccc----hhcccccCeeecCCCCCCCcC--
Q psy8879         285 LAGLDKLTSLSCHHN-QIDVLE----DHSFRALSTLSHLDLAHNRIVAVSGAS----LAHLSNLTTLDLSHNFLRALT--  353 (694)
Q Consensus       285 ~~~L~~L~~L~Ls~N-~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~~~----f~~l~~L~~L~Ls~N~L~~l~--  353 (694)
                      +.+-+.|++|+|++| +|....    ..++..-+.|+.|+|++|+|.......    +..-+.|+.|+|++|.|..-.  
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            445578889999885 775322    345566789999999999998765544    445689999999999998533  


Q ss_pred             --hhhhCCCCCCCEEEccCCCC
Q psy8879         354 --QDLITPLKSLQELRLDDNDI  373 (694)
Q Consensus       354 --~~~~~~l~~L~~L~Ls~N~L  373 (694)
                        .+.+...+.|++|+|++|..
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~  138 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQ  138 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHhhCCceeEEECCCCcC
Confidence              24566778899999997644

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=95.73  E-value=0.0067  Score=50.59  Aligned_cols=32  Identities=6%  Similarity=-0.132  Sum_probs=26.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      .++| |.+++..|+|.|+|.|+|..+.+...+.
T Consensus        57 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   89 (93)
T 1wit_A           57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFE   89 (93)
T ss_dssp             EEEEECTTBCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEECCCChhcCEEEEEEEEcCCCeEEEEEE
Confidence            3556 8899999999999999999887665443

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=95.71  E-value=0.01  Score=50.89  Aligned_cols=32  Identities=16%  Similarity=-0.033  Sum_probs=26.3

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      ++| |.+++.+|+|.|+|.|+|..+.+...+..
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   94 (103)
T 1wwb_X           62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence            446 99999999999999999998876655443

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.70  E-value=0.007  Score=51.88  Aligned_cols=43  Identities=12%  Similarity=-0.045  Sum_probs=28.9

Q ss_pred             EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +.|...........     ++.+..++   +| |.+|+.+|+|.|+|.++|.
T Consensus        39 v~W~k~g~~~~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A           39 GKWYKNGVEVRPSK-----RITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             EEEEESSCBCCCCS-----SCEEEEETTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             eEEEcCCEECcCCC-----CEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC
Confidence            56665554443222     22333344   56 8999999999999999998

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=95.68  E-value=0.0058  Score=51.99  Aligned_cols=27  Identities=7%  Similarity=0.065  Sum_probs=23.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      .++| |.+|+..|+|.|+|.|+|..+..
T Consensus        75 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~  102 (112)
T 3so5_A           75 TTILRLRNVEFTSEGXYQCVISNHFGSS  102 (112)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ceEEEEeccccccCCeEEEEEEeCCCcE
Confidence            3566 99999999999999999988763

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=95.63  E-value=0.0088  Score=54.06  Aligned_cols=32  Identities=13%  Similarity=-0.062  Sum_probs=26.3

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      .|+| |.+++..|+|.|+|+|+|..+.+..-+.
T Consensus        62 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~   94 (126)
T 1he7_A           62 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIM   94 (126)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             ceEEEECcCCCCCCEEEEEEEEECCCeEEEEEE
Confidence            3566 9999999999999999999987654433

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.55  E-value=0.0072  Score=52.84  Aligned_cols=49  Identities=14%  Similarity=0.046  Sum_probs=33.7

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.|.........    ...+..+..+++| |.+++.+|+|.|+|.++|..+...
T Consensus        40 i~W~k~g~~~~~----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   89 (118)
T 2eo9_A           40 ILWRKDGVLVST----QDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEAT   89 (118)
T ss_dssp             EEEEESSSBCCT----TSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEEE
T ss_pred             EEEEECCEECcC----CCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcEE
Confidence            566654433321    1233445567788 999999999999999999876543

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=95.43  E-value=0.0057  Score=51.74  Aligned_cols=44  Identities=9%  Similarity=-0.151  Sum_probs=29.2

Q ss_pred             EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEEe
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      +.|...........     ++.+..+|   +| |.+|+.+|+|.|+|.++|..
T Consensus        36 v~W~k~g~~i~~~~-----~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T 1waa_A           36 GQWKLKGQPLAASP-----DCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK   83 (93)
T ss_dssp             CEEEETTEECCCBT-----TEEEEEETTEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred             EEEEECCEECcCCC-----CEEEEEECCEEEEEECCCChhhCEEEEEEECCCc
Confidence            56665554444222     22333333   56 99999999999999999864

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=95.40  E-value=0.0067  Score=51.02  Aligned_cols=29  Identities=7%  Similarity=-0.128  Sum_probs=24.4

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +| |.+++..|+|.|+|.++|..+.....+
T Consensus        63 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   92 (100)
T 2kdg_A           63 SLIFEVVRASDAGAYACVAKNRAGEATFTV   92 (100)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCCeEEEEE
Confidence            56 889999999999999999888765443

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=95.33  E-value=0.0094  Score=51.74  Aligned_cols=55  Identities=5%  Similarity=-0.208  Sum_probs=34.6

Q ss_pred             EEEeccCccccccceeEeeeeEE-ecccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANV-TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~-~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      +.|...........+   .++.. .+.++| |.+++.+|+|.|+|.|+|..+.....+..
T Consensus        39 i~W~k~~~~~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   95 (114)
T 2cqv_A           39 CTWMKFRKQIQESEH---MKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL   95 (114)
T ss_dssp             EEEEESSSBCCCSSS---EEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEE
T ss_pred             EEEEECCEECcCCCC---EEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEE
Confidence            566665554442221   11111 123456 99999999999999999988766554433

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.28  E-value=0.013  Score=49.16  Aligned_cols=60  Identities=18%  Similarity=0.070  Sum_probs=37.6

Q ss_pred             cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      ++....+.|..       +.|...........     .....+.++| |.+++.+|+|.|+|.++|..+....
T Consensus        25 ~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~   92 (99)
T 2yr3_A           25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR-----STCEAGVAELHIQDALPEDHGTYTCLAENALGQVSC   92 (99)
T ss_dssp             TTCCEEEECEEEEESCCCCEEEESSSBCSSCC-----CEEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEE
T ss_pred             CCCeEEEEEEEeeeCCCeEEEEECCEECcccc-----eEeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEE
Confidence            34445666665       55655544433111     1122333566 8899999999999999998876543

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=95.26  E-value=0.012  Score=49.16  Aligned_cols=28  Identities=4%  Similarity=-0.223  Sum_probs=23.6

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +| |.+++.+|+|.|+|.++|..+.....
T Consensus        63 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~   91 (99)
T 3puc_A           63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSS   91 (99)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEeCCCcEeEE
Confidence            45 99999999999999999987765443

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=95.24  E-value=0.015  Score=48.72  Aligned_cols=29  Identities=3%  Similarity=-0.263  Sum_probs=24.2

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +| |.+++.+|+|.|+|.++|..+.....+
T Consensus        63 ~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~   92 (99)
T 1u2h_A           63 RLRILAAERGDAGFYTCKAVNEYGARQCEA   92 (99)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEccCCcCCCEEEEEEEEECCCceeEEE
Confidence            45 899999999999999999887765443

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=95.23  E-value=0.012  Score=51.55  Aligned_cols=32  Identities=16%  Similarity=-0.064  Sum_probs=26.0

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ..++| |.+|+..|+|.|+|.|+|..+.....+
T Consensus        72 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~  104 (122)
T 3s35_X           72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST  104 (122)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EEEEEEECCCCcccCEEEEEEEccCCCceEEEE
Confidence            34566 999999999999999999887766443

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.19  E-value=0.01  Score=51.11  Aligned_cols=51  Identities=10%  Similarity=-0.131  Sum_probs=32.0

Q ss_pred             EEEeccCccccccceeEeeeeEEeccc--EE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLG--TV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~g--tL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.|............  +..+....+|  +| |.+|+..|+|.|+|.++|..+...
T Consensus        40 v~W~k~g~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~   93 (110)
T 2dm2_A           40 IYWFKDGKQISPKSD--HYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS   93 (110)
T ss_dssp             EEEECSSCBCCTTCS--SEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEE
T ss_pred             EEEEECCEECCCCCC--eEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence            566665544432111  1222223344  45 889999999999999999876543

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=95.18  E-value=0.013  Score=49.96  Aligned_cols=51  Identities=14%  Similarity=-0.137  Sum_probs=30.2

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.|...........+..    ...+.++| |.+++.+|+|.|+|.++|..+.....
T Consensus        42 i~W~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   93 (108)
T 3kvq_A           42 IMWFKDNETLVEDSGIV----LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE   93 (108)
T ss_dssp             EEEEESSSBCCCBTTEE----EETTTTEEEECSCCGGGCEEEEEEEC----CEEEE
T ss_pred             EEEEECCeEcccCCCeE----EeCCCcEEEEeecCcccCEEEEEEEEeCCCceEEE
Confidence            56666554443222211    12244667 99999999999999999987766544

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=95.17  E-value=0.014  Score=48.94  Aligned_cols=50  Identities=14%  Similarity=-0.096  Sum_probs=33.3

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +.|...........     ++.+. .++| |.+++.+|+|.|+|.++|..+.....+
T Consensus        40 i~W~k~g~~~~~~~-----~~~~~-~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   90 (95)
T 2ckn_A           40 INWLRDGVQLVESN-----RTRIT-GEEVEVRDSIPADSGLYACVTSSPSGSDTTYF   90 (95)
T ss_dssp             EEEEBTTBCCCCCS-----SEEEC-SSEEEESSCCGGGSEEEEEEEEETTEEEEEEE
T ss_pred             eEEEECCEecCCCC-----CEEEe-CCEEEECCCChHHCEEEEEEeccCCCcEEEEE
Confidence            56666443333222     23333 4566 999999999999999999877755443

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=95.11  E-value=0.025  Score=47.79  Aligned_cols=28  Identities=11%  Similarity=-0.191  Sum_probs=23.6

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +| |.+++..|+|.|+|.++|..+.....
T Consensus        65 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   93 (103)
T 3qp3_A           65 TLEILDCHTDDSGTYRAVCTNYKGEASDY   93 (103)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEcCCCcccCEEEEEEEEeCCCcEEEE
Confidence            45 99999999999999999987766443

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.05  E-value=0.0093  Score=51.17  Aligned_cols=26  Identities=12%  Similarity=-0.080  Sum_probs=22.4

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +| |.+|+..|+|.|+|.++|..+...
T Consensus        67 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~   93 (110)
T 2dm3_A           67 SLIIEPVTSRDAGIYTCIATNRAGQNS   93 (110)
T ss_dssp             EEEESSCCGGGCSBBCEEEECSSCEEE
T ss_pred             EEEEeeCCcccCEEEEEEEECCCCEEE
Confidence            56 899999999999999999876543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=95.00  E-value=0.023  Score=49.64  Aligned_cols=33  Identities=12%  Similarity=-0.026  Sum_probs=27.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .++| |.+++..|+|.|+|.|+|..+.....+..
T Consensus        64 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l   97 (118)
T 1wwc_A           64 EGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING   97 (118)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEEECCCChhcCEEEEEEEECCCCeEeeEEEE
Confidence            4566 99999999999999999998876665543

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=94.79  E-value=0.012  Score=51.14  Aligned_cols=74  Identities=8%  Similarity=-0.129  Sum_probs=42.6

Q ss_pred             cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EE-----EEEecCCCcceeEEEEEeeecccee
Q psy8879         434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QV-----YVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~-----~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ++....+.|..       +.|................+.....+|.+ +.     +|+..|+|.|+|.++|..+.....-
T Consensus        23 ~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s~~  102 (117)
T 2v9t_A           23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD  102 (117)
T ss_dssp             TTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEECCC
T ss_pred             CCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEeee
Confidence            33445566655       55665544333221111122334445554 22     5589999999999999998877666


Q ss_pred             EEeeccC
Q psy8879         501 VQKNTNC  507 (694)
Q Consensus       501 ~~~~~~~  507 (694)
                      .+-.+.+
T Consensus       103 ~~l~~~~  109 (117)
T 2v9t_A          103 ASLEVAA  109 (117)
T ss_dssp             EEEEEC-
T ss_pred             EEEEhhh
Confidence            5555443

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=94.73  E-value=0.016  Score=53.43  Aligned_cols=61  Identities=10%  Similarity=-0.027  Sum_probs=37.6

Q ss_pred             eeeeeceeE-------EEEeccCccccccceeEeeeeEEecc--cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGL--GTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~--gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ....|.|..       +.|...........   +..+....+  ++| |.+|+..|+|.|+|.|+|..+.....
T Consensus        57 ~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  127 (154)
T 1fhg_A           57 SAARFDCKVEGYPDPEVMWFKDDNPVKESR---HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT  127 (154)
T ss_dssp             SCEEEEEEEEEESCCEEEEEETTEECCCSS---SEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEEEecCCEEEEEECCEECCCCC---cEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEE
Confidence            344556654       56666554443221   112222222  366 89999999999999999988775443

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=94.69  E-value=0.01  Score=51.11  Aligned_cols=31  Identities=10%  Similarity=-0.139  Sum_probs=25.5

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .++| |.+|+.+|+|.|+|.++|..+.....+
T Consensus        69 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  100 (106)
T 1nct_A           69 KSTFEISSVQASDEGNYSVVVENSEGKQEAEF  100 (106)
T ss_dssp             EEEEEECCCCSSCCSEEEECCBCSSCBCCEEE
T ss_pred             EEEEEECcCCchhCEEEEEEEEeCCCeEEEEE
Confidence            3566 999999999999999999887755443

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=94.67  E-value=0.017  Score=48.28  Aligned_cols=29  Identities=7%  Similarity=-0.271  Sum_probs=23.8

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      .++| |.+++.+|+|.|+|.++|..+....
T Consensus        50 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   79 (95)
T 4hwu_A           50 GEYLQIKGATPRDSGLYACTAARTVDSETW   79 (95)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCEEEECcCCcccCEEEEEEEccCCCcEEE
Confidence            3556 9999999999999999998765433

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=94.58  E-value=0.016  Score=51.30  Aligned_cols=23  Identities=17%  Similarity=0.005  Sum_probs=20.9

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .++| |.+|+.+|+|.|+|.++|.
T Consensus        65 ~~~L~I~~v~~~DsG~Y~C~a~n~   88 (124)
T 3rbg_A           65 QLSITVPNVTLQDEGVYKCLHYSD   88 (124)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEESS
T ss_pred             EEEEEECCCChHHCEEEEEEEEcC
Confidence            4667 9999999999999999998

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.46  E-value=0.024  Score=49.45  Aligned_cols=32  Identities=9%  Similarity=-0.106  Sum_probs=26.0

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      +| |.+++.+|+|.|+|.++|..+.....+...
T Consensus        80 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~  112 (118)
T 2e7c_A           80 VFFVRQAARSDSGEYELSVQIENMKDTATIRIR  112 (118)
T ss_dssp             EEEESSCCTTTCEEEEEEEECSSCEECCEEEEE
T ss_pred             EEEECCCChhcCEEEEEEEEeCCCeEEEEEEEE
Confidence            35 899999999999999999888766554443

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=94.40  E-value=0.013  Score=50.10  Aligned_cols=43  Identities=12%  Similarity=-0.062  Sum_probs=27.6

Q ss_pred             EEEeccCccccccceeEeeeeEEecccE---E-EEEEEecCCCcceeEEEEE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGT---V-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gt---L-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +.|..........     .++.+..++.   | |.+++.+|+|.|+|.+.|.
T Consensus        38 v~W~k~~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   84 (108)
T 2dm7_A           38 VEWKKGPETLRDG-----GRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQE   84 (108)
T ss_dssp             CEEESSSSBCCSS-----SSCEEEEETTEEEEEESSCCTTTCSEEEEEETTE
T ss_pred             eEEEECCEECCCC-----CCEEEEecCCEEEEEECCCCcccCEEEEEEEcCC
Confidence            5666555444321     2333333443   5 9999999999999999654

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=94.39  E-value=0.018  Score=48.85  Aligned_cols=23  Identities=17%  Similarity=0.014  Sum_probs=20.4

Q ss_pred             cccEE-EEEEEecCCCcceeEEEE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      ++++| |.+|+.+|+|.|+|.++|
T Consensus        69 ~~~~L~I~~v~~~D~G~Y~C~~~n   92 (108)
T 3m45_A           69 HELSISVSDVSLSDEGQYTCSLFT   92 (108)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CcEEEEECCCChhHCeEEEEEEEc
Confidence            45566 999999999999999999

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.17  E-value=0.029  Score=47.34  Aligned_cols=47  Identities=15%  Similarity=-0.086  Sum_probs=31.5

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.|...........     +..+. .++| |.+|+..|+|.|+|.++|..+...
T Consensus        34 i~W~k~g~~~~~~~-----~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   81 (99)
T 2cr3_A           34 INWLRDGVQLAESN-----RTRIT-GEEVEVQDSVPADSGLYACVTSSPSGSDT   81 (99)
T ss_dssp             EEEEESSSBCCCCS-----SEEEC-SSEEEETTCCTTTCEEEEEEEEETTEEEE
T ss_pred             EEEEECCEECCCCC-----cEEEE-CCEEEEccCCHHHCEEEEEEEEeCCceEE
Confidence            55665554433221     23333 4566 889999999999999999877653

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.16  E-value=0.015  Score=49.63  Aligned_cols=21  Identities=5%  Similarity=-0.300  Sum_probs=19.3

Q ss_pred             EE-EEEEEecCCCcceeEEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +| |.+++.+|+|.|+|.++|.
T Consensus        62 ~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A           62 KLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             EEEESSCCGGGCSEEEEEESSS
T ss_pred             EEEECCCChhhCEEEEEEEcCC
Confidence            45 9999999999999999986

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=94.16  E-value=0.034  Score=46.57  Aligned_cols=31  Identities=16%  Similarity=-0.049  Sum_probs=25.2

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .+++| |.+++.+|+|.|+|.++|..+.....
T Consensus        60 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (98)
T 1gl4_B           60 FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT   91 (98)
T ss_dssp             ETTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCCEEEEeCCChhhCEEEEEEecCCCCccccE
Confidence            35667 99999999999999999987665443

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=94.06  E-value=0.048  Score=45.52  Aligned_cols=29  Identities=7%  Similarity=-0.040  Sum_probs=24.4

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +| |.+++..|+|.|+|.++|..+......
T Consensus        59 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   88 (97)
T 2bk8_A           59 ILYVKDITKLDDGTYRCKVVNDYGEDSSYA   88 (97)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EEEEecCChhhCeEEEEEEECCCCeEeEEE
Confidence            56 899999999999999999887665543

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=93.76  E-value=0.056  Score=45.78  Aligned_cols=21  Identities=5%  Similarity=-0.252  Sum_probs=18.9

Q ss_pred             cEE-EEEEEecCCCcceeEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      ++| |.+++.+|+|.|+|.++|
T Consensus        64 ~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A           64 HILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             EEEEEEEECTTTCSEEEEEETT
T ss_pred             EEEEECCCCcccCEEEEEEECC
Confidence            455 999999999999999987

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=93.73  E-value=0.014  Score=49.11  Aligned_cols=43  Identities=7%  Similarity=-0.094  Sum_probs=27.7

Q ss_pred             EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +.|...........     ++.+..+|   +| |.+++.+|+|.|+|.|.|.
T Consensus        37 v~W~k~g~~i~~~~-----~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           37 VRWYKDGQEVEESD-----FVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             CEEEETTSCCCCCS-----SCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEEECCEEeeeee-----eeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            56665554444222     22333333   45 9999999999999998664

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=93.64  E-value=0.017  Score=49.72  Aligned_cols=32  Identities=13%  Similarity=-0.092  Sum_probs=26.1

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      .++| |.+|+.+|+|.|+|.|+|..+.+...+.
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  103 (108)
T 3cx2_A           71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFN  103 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eEEEEEecCCCccCEEEEEEEecCCCceEEEEE
Confidence            3556 9999999999999999998877655443

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=93.46  E-value=0.021  Score=51.36  Aligned_cols=28  Identities=7%  Similarity=-0.145  Sum_probs=24.4

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ..++| |.+|+..|+|.|+|.|+|..+..
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           88 AASTISIDTLVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECCTTSS
T ss_pred             cceEEEECCCCcccCEEEEEEEEecCCcc
Confidence            45677 99999999999999999987765

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=93.39  E-value=0.019  Score=51.25  Aligned_cols=32  Identities=16%  Similarity=0.059  Sum_probs=26.5

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      +| |.+|+.+|+|.|+|.|.|..+..++.+..+
T Consensus        85 sL~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~Lk  117 (125)
T 4gos_A           85 SLRLKNVQLTDAGTYKCYIITSKGKGNANLEYK  117 (125)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEeCCCeEEEEEEEE
Confidence            45 999999999999999999887776655443

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=93.02  E-value=0.027  Score=50.79  Aligned_cols=26  Identities=12%  Similarity=-0.070  Sum_probs=22.2

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ..| |.+|+..|+|+|+|+|+|.....
T Consensus        75 ~~L~I~~v~~~DaG~Y~Cevsn~~g~~  101 (126)
T 2dav_A           75 FEMQIIKAKDNFAGNYRCEVTYKDKFD  101 (126)
T ss_dssp             EEEEECSCCTTSCEEEEEEEECSSCEE
T ss_pred             EEEEEccCCcccCEEEEEEEEeCCCcE
Confidence            455 99999999999999999986443

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=92.89  E-value=0.12  Score=48.14  Aligned_cols=29  Identities=3%  Similarity=-0.272  Sum_probs=24.4

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +| +.+++.+|+|.|+|.|+|..+.....+
T Consensus       160 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  189 (194)
T 2a38_A          160 SLLIAEAYPEDSGTYSVNATNSVGRATSTA  189 (194)
T ss_dssp             EEEEEEECGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEECCCChhcCeEEEEEEEeCCCceEEEE
Confidence            45 999999999999999999887765543

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.73  E-value=0.043  Score=47.04  Aligned_cols=21  Identities=0%  Similarity=-0.368  Sum_probs=18.2

Q ss_pred             EE-EEEEEecCCCcceeEEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +| |.+|+.+|+|.|+|.+.|.
T Consensus        66 ~L~I~~v~~~D~G~Y~C~a~~~   87 (104)
T 2eny_A           66 ILVVREAAPSDAGEVVFSVRGL   87 (104)
T ss_dssp             EEEECSCCTTTCSCEEEEETTE
T ss_pred             EEEECCCCHHHCEEEEEEECCe
Confidence            56 9999999999999988654

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=92.49  E-value=0.039  Score=47.75  Aligned_cols=28  Identities=11%  Similarity=0.066  Sum_probs=23.0

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      .+| |.+|+.+|+|.|+|.+.+.....+.
T Consensus        89 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~  117 (126)
T 1eaj_A           89 ASINVTNLQLSDIGTYQCKVKKAPGVANK  117 (126)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEEECcCChHHCeEEEEEEEcCCccCCc
Confidence            556 9999999999999999986554443

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=92.45  E-value=0.093  Score=49.69  Aligned_cols=26  Identities=8%  Similarity=-0.073  Sum_probs=22.1

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      ..++| |.+|+.+|+|.|+|.|+|...
T Consensus       153 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          153 HQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             cceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            44566 999999999999999999754

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=92.33  E-value=0.044  Score=47.03  Aligned_cols=43  Identities=14%  Similarity=0.043  Sum_probs=27.2

Q ss_pred             EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +.|..........    ..+..+..+|   +| |.+|+.+|+|.|+|.+.+
T Consensus        47 v~W~k~g~~l~~~----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           47 VKWLKNGQEIQMS----GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             CEEEESSSEECCC----SSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             EEEEECCEECCCC----CCeEEEEecCCEEEEEECCCCcccCEEEEEEECC
Confidence            5565554443321    0233344445   66 999999999999999954

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=92.31  E-value=0.28  Score=41.00  Aligned_cols=18  Identities=6%  Similarity=-0.114  Sum_probs=16.6

Q ss_pred             EE-EEEEEecCCCcceeEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLL  489 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~  489 (694)
                      +| |.+++.+|+|.|+|.+
T Consensus        64 ~L~I~~~~~~D~G~Y~C~a   82 (100)
T 2yuv_A           64 ILFINNCQMTDDSEYYVTA   82 (100)
T ss_dssp             EEEEEEECTTTCCEEEEEE
T ss_pred             EEEEcCCCcCcCEEEEEEE
Confidence            45 9999999999999998

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=92.29  E-value=0.094  Score=50.55  Aligned_cols=29  Identities=14%  Similarity=-0.050  Sum_probs=24.3

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ++| |.+|+.+|+|.|+|.|+|..+.....
T Consensus       171 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~  200 (213)
T 2x1w_L          171 STLTIDGVTRSDQGLYTCAASSGLMTKKNS  200 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEecCCCcEEEE
Confidence            456 99999999999999999988766443

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.27  E-value=0.031  Score=47.29  Aligned_cols=20  Identities=10%  Similarity=-0.006  Sum_probs=18.4

Q ss_pred             EE-EEEEEecCCCcceeEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +| |.+++.+|+|.|+|.++|
T Consensus        64 ~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A           64 MLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             EEEESSCCTTTCSEEEEECSS
T ss_pred             EEEECCCCcccCEEEEEEEcc
Confidence            35 899999999999999998

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=92.25  E-value=0.074  Score=50.90  Aligned_cols=42  Identities=10%  Similarity=0.040  Sum_probs=32.3

Q ss_pred             eeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         463 LRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       463 ~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      .+..+...++| |.+++.+|+|.|+|.|+|..+........-+
T Consensus       162 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv  204 (217)
T 2vr9_A          162 SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI  204 (217)
T ss_dssp             CSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence            34455667778 8899999999999999999887765544433

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=92.17  E-value=0.084  Score=50.13  Aligned_cols=30  Identities=3%  Similarity=-0.248  Sum_probs=25.0

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +| |.+++.+|+|.|+|.|+|..+.....+.
T Consensus       175 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~  205 (212)
T 2r15_A          175 YFTINGVSTADSGKYGLVVKNKYGSETSDFT  205 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEcCcchHHCeEEEEEEEcCCCcEEEEEE
Confidence            55 8999999999999999999887655443

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=92.02  E-value=0.069  Score=49.85  Aligned_cols=57  Identities=18%  Similarity=0.090  Sum_probs=38.1

Q ss_pred             eeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      ....+.|..       +.|.........     ..+..+..+++| +.+++..|+|.|+|.|+|..+...
T Consensus       116 ~~~~l~C~~~g~p~~~v~W~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  180 (192)
T 2iep_A          116 LKAVLPCTTMGNPKPSVSWIKGDSALRE-----NSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAY  180 (192)
T ss_dssp             SCEEECCEEEEESCCEEEEEETTEECCC-----CSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcEEEEEEEeccCCceEEEEeCCEEccC-----CCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEE
Confidence            334566654       556554443331     223445566777 889999999999999999887663

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=92.01  E-value=0.067  Score=44.12  Aligned_cols=26  Identities=15%  Similarity=-0.055  Sum_probs=22.3

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ++| |.+++.+|+|.|+|.++|..+..
T Consensus        50 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~   76 (91)
T 3bfo_A           50 KLYMVPYVDLEHQGTYWCHVYNDRDSQ   76 (91)
T ss_dssp             SEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             CeEEECCCCHHhCEEEEEEEEcCCCCE
Confidence            455 88999999999999999987753

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.00  E-value=0.044  Score=47.11  Aligned_cols=20  Identities=20%  Similarity=0.052  Sum_probs=18.5

Q ss_pred             EE-EEEEEecCCCcceeEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +| |.+++.+|+|.|+|.+.|
T Consensus        69 ~L~I~~v~~~D~G~Y~C~a~n   89 (113)
T 2cpc_A           69 RLVLPAVQLEDSGEYLCEIDD   89 (113)
T ss_dssp             EEEESSCCTTTCEEEEEESSS
T ss_pred             EEEECCCCcccCEEEEEEEec
Confidence            55 999999999999999988

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=92.00  E-value=0.05  Score=52.79  Aligned_cols=30  Identities=10%  Similarity=-0.199  Sum_probs=25.2

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ++| |.+|+..|+|.|+|+|+|..+.+....
T Consensus       171 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  201 (207)
T 3rbs_A          171 CTLLITEFSKKDAGIYEVILKDDRGKDKSRL  201 (207)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCEEEEEE
Confidence            346 999999999999999999988766543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=91.91  E-value=0.11  Score=49.86  Aligned_cols=37  Identities=8%  Similarity=-0.045  Sum_probs=29.6

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEEeecc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTN  506 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~  506 (694)
                      .++| |.+++.+|+|.|+|.|+|..+...+..+.-++.
T Consensus       166 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          166 IGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence            3566 899999999999999999998876665554443

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=91.81  E-value=0.096  Score=52.43  Aligned_cols=33  Identities=6%  Similarity=-0.053  Sum_probs=27.6

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .++| |.+|+..|+|.|+|.|+|..+.....+..
T Consensus       244 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L  277 (289)
T 3ejj_X          244 VRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF  277 (289)
T ss_dssp             EEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEE
T ss_pred             eEEEEEEeecccCCEEEEEEEEcCCCCccccEEE
Confidence            4566 88999999999999999998887766554

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=91.79  E-value=0.14  Score=43.94  Aligned_cols=40  Identities=10%  Similarity=-0.129  Sum_probs=27.0

Q ss_pred             EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLL  489 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~  489 (694)
                      +.|..........     .++.+..++   +| |.+++.+|+|.|+|.+
T Consensus        49 v~W~k~~~~l~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (113)
T 2edh_A           49 VEWWKGHETLRDG-----DRHSLRQDGARCELQIRGLVAEDAGEYLCMC   92 (113)
T ss_dssp             CEEEESSSBCCCS-----SSEEEEEETTEEEEEECSCCSTTCEEEEEEE
T ss_pred             EEEEECCEECCCC-----CcEEEEECCCEEEEEECCCChhhCEEEEEEe
Confidence            5566555444322     333444455   56 9999999999999999

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=91.74  E-value=0.2  Score=46.59  Aligned_cols=32  Identities=16%  Similarity=-0.039  Sum_probs=25.0

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ..++| |.+|+.+|+|.|+|.|+|........+
T Consensus       141 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~  173 (184)
T 2ny1_B          141 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKI  173 (184)
T ss_dssp             ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CceEEEEecCCcCCCeEEEEEEEECCceEEEEE
Confidence            44666 899999999999999998665554444

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=91.69  E-value=0.16  Score=49.19  Aligned_cols=60  Identities=13%  Similarity=0.082  Sum_probs=31.9

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE----EEEEEecCCCcceeEEEEEeeeccceeEEeeccCCCC
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV----QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRP  510 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL----~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~~~~~  510 (694)
                      +.|...++......   ........+|+.    +.+|+.+|.|.|+|.|+|.++..+...   .+...+|
T Consensus       151 i~W~k~~~~~~~~~---~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~---~v~v~ep  214 (226)
T 4f80_A          151 IQWSNNKGENIPTV---EAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTA---SISIADP  214 (226)
T ss_dssp             EEEECTTSCBCCCE---ECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEE---EECCCTT
T ss_pred             EEEEECCceEcCCC---ceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEE---EEEECCC
Confidence            66766554443111   222233445543    457888999999999999987665443   3444454

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=91.58  E-value=0.15  Score=47.29  Aligned_cols=32  Identities=9%  Similarity=-0.203  Sum_probs=26.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      .++| |.+++..|+|.|+|.|+|..+.....+.
T Consensus       151 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  183 (189)
T 2v5t_A          151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAF  183 (189)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEE
Confidence            4556 8899999999999999998887665443

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=91.53  E-value=0.062  Score=52.56  Aligned_cols=34  Identities=9%  Similarity=-0.136  Sum_probs=26.7

Q ss_pred             ecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         468 TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      .+.++| |.+|+.+|+|.|+|.|+|.++..+...+
T Consensus       210 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~  244 (250)
T 2fbo_J          210 SGARNLVIRAAKITDAGRVWCELATGQGELDADRS  244 (250)
T ss_dssp             ETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEE
T ss_pred             CCccEEEEecCCcccCEEEEEEecCCccccCccce
Confidence            345677 9999999999999999997765554433

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=91.53  E-value=0.11  Score=51.96  Aligned_cols=68  Identities=7%  Similarity=-0.090  Sum_probs=41.5

Q ss_pred             cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecc-cEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGL-GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~-gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .+....+.|..       +.|........ .......+..+..+ ++| |.+++..|+|.|+|.|+|..+.....+..
T Consensus       210 ~g~~v~l~C~~~g~p~p~i~W~~~g~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  286 (291)
T 1qz1_A          210 LGQSVTLVCDADGFPEPTMSWTKDGEPIE-NEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL  286 (291)
T ss_dssp             SCCCEEEEEEEEEESCCEEEEEETTEECC-CC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCceEEEEEEEEEeCCCcEEEEECCEECc-CCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEE
Confidence            33445677765       55655544333 21111123334333 356 89999999999999999998876655443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=91.49  E-value=0.11  Score=49.07  Aligned_cols=37  Identities=11%  Similarity=0.091  Sum_probs=27.4

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeEEeeccCC
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCS  508 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~~~  508 (694)
                      ++| |.+++..|.|.|+|.|+|..+..+..+ ..+++++
T Consensus       175 s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~-t~~v~V~  212 (218)
T 4frw_A          175 SEFHLVPSRSMNGQPLTCVVSHPGLLQDQRI-THILHVS  212 (218)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTCSSCEEE-EEECCEE
T ss_pred             EEEEEeeCCHHhCeEEEEEEEeCCCCeEEEE-EEEEEEC
Confidence            456 888999999999999999887765443 3344444

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=91.49  E-value=0.049  Score=47.71  Aligned_cols=28  Identities=14%  Similarity=-0.027  Sum_probs=23.9

Q ss_pred             EE-EEEEEecCC-CcceeEEEEEeeeccce
Q psy8879         472 TV-QVYVQLWTN-YDPNCLLTITLYIDGDV  499 (694)
Q Consensus       472 tL-~~~v~~~d~-G~YtC~~~n~~~~~~~~  499 (694)
                      +| |.+|+..|. |.|+|.|+|..+.+...
T Consensus        77 ~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~  106 (122)
T 2cry_A           77 TLTISNIVRADFQTIYNCTAWNSFGSDTEI  106 (122)
T ss_dssp             EEECTTCCHHHHHSCEEEEEECSSCEEEEE
T ss_pred             EEEEcCCChhhCCceEEEEEECCCCeEEEE
Confidence            55 889999999 99999999998876643

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.45  E-value=0.062  Score=45.29  Aligned_cols=21  Identities=5%  Similarity=-0.175  Sum_probs=17.9

Q ss_pred             EE-EEEEEecCCCcceeEEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +| |.+++.+|+|.|+|.+.+.
T Consensus        67 ~L~I~~~~~~D~G~Y~C~a~~~   88 (102)
T 2eo1_A           67 RLVVQQAGQAEAGEYSCEAGGQ   88 (102)
T ss_dssp             EEEETTCCTTTCSCEEEEETTE
T ss_pred             EEEECCCCcccCEEEEEEcCCC
Confidence            55 8899999999999998543

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=91.41  E-value=0.12  Score=49.51  Aligned_cols=33  Identities=6%  Similarity=-0.161  Sum_probs=26.3

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .++| |.+++..|+|.|+|.++|..+.....+..
T Consensus        75 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  108 (215)
T 3mtr_A           75 ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL  108 (215)
T ss_dssp             EEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             eeEEEEecCChhhCeEEEEEEEECCCceEEEEEE
Confidence            4566 99999999999999999988776544433

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=91.27  E-value=0.074  Score=45.58  Aligned_cols=33  Identities=15%  Similarity=-0.080  Sum_probs=26.5

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      +.+| |.+|+.+|+|.|+|.+.+........++.
T Consensus        68 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~  101 (110)
T 1ncn_A           68 SWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQ  101 (110)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             CEEEEEcCCChHHCEEEEEEEEcCCCCceEEEEE
Confidence            4677 99999999999999999987665554443

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.21  E-value=0.039  Score=49.11  Aligned_cols=27  Identities=11%  Similarity=-0.280  Sum_probs=23.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      +++| |.+|+..|+|.|+|+|+|.....
T Consensus        79 ~~~L~I~~v~~~D~G~Y~Cevsn~~g~~  106 (118)
T 2edn_A           79 TVELHIGKVVLGDRGYYRLEVKAKDTCD  106 (118)
T ss_dssp             EEEEEESSCCTTTCSCEEEEEECSSCEE
T ss_pred             eEEEEEeeCChhhCEEEEEEEEEcCCcE
Confidence            3556 99999999999999999987643

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=91.20  E-value=0.17  Score=47.36  Aligned_cols=25  Identities=8%  Similarity=-0.423  Sum_probs=21.6

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      +| |.+++..|+|.|+|.++|..+..
T Consensus        63 ~L~i~~~~~~d~G~Y~C~~~n~~g~~   88 (197)
T 2j8h_A           63 QLIIASVTDDDATVYQVRATNQGGSV   88 (197)
T ss_dssp             EEEECSCCGGGCSEEEEEEEETTEEE
T ss_pred             EEEECcCCHHhCEEEEEEEEECCCce
Confidence            56 99999999999999999876553

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=91.14  E-value=0.052  Score=51.04  Aligned_cols=35  Identities=11%  Similarity=-0.169  Sum_probs=28.2

Q ss_pred             eeeeEEecccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         462 SLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       462 ~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ..|..+..+|+| |.+|+.+|+|.|+|.+.|..+..
T Consensus        52 ~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~   87 (176)
T 1hng_A           52 SGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTR   87 (176)
T ss_dssp             STTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCE
T ss_pred             CCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCE
Confidence            345566677878 99999999999999999876543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=91.10  E-value=0.18  Score=47.61  Aligned_cols=31  Identities=10%  Similarity=-0.155  Sum_probs=26.2

Q ss_pred             eeeEEecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         463 LRANVTGLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       463 ~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      .|..+..+++| |.+++..|+|.|+|.+.+..
T Consensus        63 ~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~   94 (208)
T 3r4d_A           63 GREIIYSNGSLLFQMITMKDMGVYTLDMTDEN   94 (208)
T ss_dssp             SSEEECTTSCEEECSCCGGGCEEEEEEEECSS
T ss_pred             ceeEEecCCeEEEccccccCCeEEEEEEEccc
Confidence            35566677778 99999999999999999874

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.00  E-value=0.067  Score=45.11  Aligned_cols=20  Identities=5%  Similarity=-0.298  Sum_probs=17.9

Q ss_pred             EE-EEEEEecCCCcceeEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +| |.+++..|+|.|+|.+.|
T Consensus        68 ~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           68 ILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             EEECSSCCGGGCSBEEEECSS
T ss_pred             EEEECCCChhhCEEEEEEEcC
Confidence            35 889999999999999987

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=90.89  E-value=0.082  Score=49.37  Aligned_cols=56  Identities=13%  Similarity=-0.054  Sum_probs=36.5

Q ss_pred             eeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      ....+.|..       +.|..........   ...+..+..+++| |.+++.+|+|.|+|.|+|...
T Consensus       116 ~~~~l~C~~~g~p~~~v~W~~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  179 (191)
T 1epf_A          116 EDAVIVCDVVSSLPPTIIWKHKGRDVILK---KDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR  179 (191)
T ss_dssp             SCEEECCEEECSSCCEEEEEETTEEGGGG---CCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             CeEEEEEEECCCCCCEEEEEECCEEeecc---CCceEEEecCCeEEECCCChhhCEEEEEEEEEecc
Confidence            345566654       5666555443311   1234455566677 899999999999999999653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=90.78  E-value=0.11  Score=49.25  Aligned_cols=57  Identities=12%  Similarity=0.102  Sum_probs=36.4

Q ss_pred             eeeeeceeE------EEEeccCccccccceeEeeeeEEecc-cEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         436 SALVLGCSE------ILALVPTLTSQPLSYVTSLRANVTGL-GTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       436 ~~~~l~c~~------i~~l~~~~~~~~~~~i~~~~~n~~~~-gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      ....+.|..      +.|..........     .+..+..+ ++| |.+++..|+|.|+|.|+|.++...
T Consensus       126 ~~v~l~C~~~~~pp~i~W~~~g~~l~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  190 (208)
T 3r4d_A          126 DSVTLTCLSNDIGANIQWLFNSQSLQLT-----ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR  190 (208)
T ss_dssp             CCEEEEEECSCTTCEEEEEETTEECCCC-----SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEE
T ss_pred             CCEEEEEECCCCCCceEEEECCEeCCCC-----CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCccc
Confidence            334555543      6666654443312     22233333 666 899999999999999999876644

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=90.76  E-value=0.14  Score=49.05  Aligned_cols=29  Identities=7%  Similarity=-0.042  Sum_probs=24.9

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      +|+| |.+++.+|+|.|+|.|+|..+....
T Consensus       162 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s  191 (212)
T 2yd1_A          162 DGFLQIENSREEDQGKYECVAENSMGTEHS  191 (212)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCeEEEccCChhhCEEEEEEeecCCCceeE
Confidence            4566 9999999999999999998887653

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=90.72  E-value=0.19  Score=51.24  Aligned_cols=30  Identities=17%  Similarity=-0.102  Sum_probs=24.8

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .++| |.+|+.+|+|.|+|.|+|.++.....
T Consensus       267 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  297 (313)
T 4fqp_A          267 GAQLLIRPVDKPINTTLICNVTNALGARQAE  297 (313)
T ss_dssp             TTEEEECCCSSCCEEEEEEEEECSSCEEEEE
T ss_pred             CCEEEECcCChhhCEEEEEEEEeCCCcEEEE
Confidence            4566 89999999999999999988765443

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=90.70  E-value=0.32  Score=45.17  Aligned_cols=57  Identities=16%  Similarity=-0.013  Sum_probs=35.2

Q ss_pred             ceeeeeceeE-------EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         435 QSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       435 ~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      +....+.|..       +.|.........     ..+..+..++   +| |.+++..|+|.|+|.++|.....
T Consensus        22 G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~   89 (197)
T 3lcy_A           22 GEAAQLSCQIVGRPLPDIKWYRFGKELIQ-----SRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEV   89 (197)
T ss_dssp             TSEEEEEEEEEEESCCEEEEEETTEEECC-----CSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEE
T ss_pred             CCcEEEEEEEecCCCCEEEEEECCEECCC-----CccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCce
Confidence            3445566654       556555444331     1222333344   55 99999999999999999865543

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=90.59  E-value=0.08  Score=43.70  Aligned_cols=20  Identities=5%  Similarity=-0.212  Sum_probs=17.3

Q ss_pred             EE-EEEEEecCCCcceeEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +| |.+++..|+|.|+|.|.|
T Consensus        52 ~L~I~~~~~~D~G~Y~C~a~n   72 (84)
T 2lu7_A           52 VLRVQGARSGDAGEYLCDAPQ   72 (84)
T ss_dssp             EEEESSCSSTTCEEEEEECTT
T ss_pred             EEEecCCCCcccEEEEEEECC
Confidence            45 999999999999998744

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=90.55  E-value=0.15  Score=54.02  Aligned_cols=61  Identities=13%  Similarity=0.014  Sum_probs=40.3

Q ss_pred             cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .+....+.|.+       +.|...........     ++.+. +++| |.+|+.+|+|.|+|.|+|..+......
T Consensus       309 ~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-----~~~~~-~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a  377 (384)
T 3kld_A          309 MEESVFWECKANGRPKPTYRWLKNGDPLLTRD-----RIQIE-QGTLNITIVNLSDAGMYQCVAENKHGVIFSSA  377 (384)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEETTEECCCBT-----TEEEE-TTEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCCCEEEEeECCccCCCeEEEEECCEECCCCc-----cEEEe-CCEEEEeecChhhCEEEEEEEEeCCceEEece
Confidence            34456678876       55655444333222     22333 4566 999999999999999999888765443

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=90.47  E-value=0.19  Score=52.70  Aligned_cols=27  Identities=11%  Similarity=-0.031  Sum_probs=22.7

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      .++| |.+|+.+|+|.|+|.|+|..+..
T Consensus        62 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~   89 (389)
T 2jll_A           62 SSSLHIKDVKLSDSGRYDCEAASRIGGH   89 (389)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred             cceEEEcccChhhCEEEEEEEEeCCCCc
Confidence            4566 99999999999999999866544

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=90.40  E-value=0.12  Score=46.88  Aligned_cols=23  Identities=13%  Similarity=0.039  Sum_probs=20.6

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +++| |.+|+.+|+|.|+|.++|.
T Consensus       102 ~~~L~I~~v~~~DsG~Y~C~~~n~  125 (145)
T 1z9m_A          102 ELSISISNVALADEGEYTCSIFTM  125 (145)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECSS
T ss_pred             eEEEEECCCChhhCEEEEEEEEcC
Confidence            4566 9999999999999999987

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=90.37  E-value=0.075  Score=47.70  Aligned_cols=28  Identities=11%  Similarity=0.108  Sum_probs=22.8

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      .+| |.+|+.+|+|.|+|.+.+..+..+.
T Consensus        85 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~  113 (139)
T 1pko_A           85 VALRIQNVRFSDEGGYTCFFRDHSYQEEA  113 (139)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEEEccCCHHHCEEEEEEEEcCCCceEE
Confidence            456 9999999999999999997654333

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=90.33  E-value=0.18  Score=51.02  Aligned_cols=30  Identities=3%  Similarity=-0.248  Sum_probs=25.4

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +| |.+|+..|+|.|+|.|+|..+.....+.
T Consensus       280 ~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  310 (317)
T 2y25_A          280 YFTINGVSTADSGKYGLVVKNKYGSETSDFT  310 (317)
T ss_dssp             EEEEBSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEEeCCCeEEEEEE
Confidence            55 9999999999999999999887755444

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=90.24  E-value=0.07  Score=50.52  Aligned_cols=28  Identities=7%  Similarity=-0.326  Sum_probs=24.1

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ..++| |.+|+.+|+|.|+|.|+|..+..
T Consensus       151 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            34555 89999999999999999998876

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=90.17  E-value=0.11  Score=49.19  Aligned_cols=24  Identities=8%  Similarity=-0.175  Sum_probs=20.9

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      .+.| |.+|+.+|+|.|+|.|+|..
T Consensus       156 ~~~L~i~~v~~~D~G~Y~C~a~n~~  180 (198)
T 1ugn_A          156 RAIFSVGPVSPSRRWWYRCYAYDSN  180 (198)
T ss_dssp             EEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             eeEEEecccCcccCeEEEEEEEeCC
Confidence            3556 99999999999999999974

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=90.14  E-value=0.18  Score=50.55  Aligned_cols=34  Identities=12%  Similarity=-0.028  Sum_probs=27.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      .++| |.+|+..|+|.|+|.|+|.++.........
T Consensus       241 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~  275 (289)
T 3mjg_X          241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN  275 (289)
T ss_dssp             EEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEcccChhhCcEEEEEeecCCCCceeEEEEE
Confidence            3566 999999999999999999887766544433

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=90.10  E-value=0.16  Score=50.94  Aligned_cols=32  Identities=9%  Similarity=-0.142  Sum_probs=26.1

Q ss_pred             ecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         468 TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ...++| |.+|+..|+|.|+|.|+|..+.....
T Consensus       249 ~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~  281 (290)
T 2o26_X          249 ERQETLTISSARVDDSGVFMCYANNTFGSANVT  281 (290)
T ss_dssp             EEEEEEEESSCCSSSCEEEEEEEECSSCEEEEE
T ss_pred             EEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEE
Confidence            344566 99999999999999999988776443

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=90.10  E-value=0.23  Score=49.68  Aligned_cols=33  Identities=9%  Similarity=-0.213  Sum_probs=27.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .++| |.+++.+|+|.|+|.|+|..+........
T Consensus       247 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  280 (291)
T 2wim_A          247 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL  280 (291)
T ss_dssp             TCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             ccEEEEeeCCcccCEEEEEEEEECCCceeeeEEE
Confidence            3556 99999999999999999998877665543

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.07  E-value=0.058  Score=45.64  Aligned_cols=21  Identities=5%  Similarity=-0.056  Sum_probs=18.9

Q ss_pred             EE-EEEEEecCCCcceeEEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +| |.+++.+|+|.|+|.+.|.
T Consensus        66 ~L~I~~~~~~D~G~Y~C~a~n~   87 (104)
T 2e6p_A           66 RLILPEAKVQDSGEFECRTEGV   87 (104)
T ss_dssp             EEEESSCCTTTCEEEEEECSSC
T ss_pred             EEEECCCChhhCEEEEEEECCc
Confidence            45 8999999999999999885

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=90.02  E-value=0.097  Score=44.81  Aligned_cols=22  Identities=9%  Similarity=0.155  Sum_probs=19.9

Q ss_pred             ccEE-EEEEEecCCCcceeEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +.+| |.+|+.+|+|.|+|.+.+
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~  100 (118)
T 3udw_C           78 NASLRMFGLRVEDEGNYTCLFVT  100 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEeecChHHCeEEEEEEEE
Confidence            4566 999999999999999988

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=89.94  E-value=0.24  Score=47.33  Aligned_cols=27  Identities=4%  Similarity=-0.129  Sum_probs=21.6

Q ss_pred             cEE-EEEE-EecCCCcceeEEEEEeeecc
Q psy8879         471 GTV-QVYV-QLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       471 gtL-~~~v-~~~d~G~YtC~~~n~~~~~~  497 (694)
                      ..| |.++ +..|+|.|+|.++|..+...
T Consensus        63 ~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~   91 (212)
T 2yd6_A           63 SVLRIQPLRTPRDEAIYECVASNNVGEIS   91 (212)
T ss_dssp             EEEEECSCCTTTTCEEEEEEEEETTEEEE
T ss_pred             eEEEEeccCCCCCCeEEEEEEEcCCCcEE
Confidence            345 8889 49999999999999776643

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.82  E-value=0.085  Score=43.98  Aligned_cols=25  Identities=8%  Similarity=-0.088  Sum_probs=21.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      .++| |.+++.+|+|.|+|.++|...
T Consensus        56 ~~~L~i~~v~~~d~G~Y~C~a~n~~~   81 (96)
T 2ens_A           56 SPVLILPEIGPQDQGTYSCVATHSSH   81 (96)
T ss_dssp             CSEEEEESCCTTTCEEEECEECCSSC
T ss_pred             CCEEEECCCCcccCEEEEEEEEeCCC
Confidence            4566 899999999999999999543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=89.74  E-value=0.31  Score=45.48  Aligned_cols=31  Identities=13%  Similarity=-0.121  Sum_probs=25.5

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .++| |.+++.+|+|.|+|.|+|..+.....+
T Consensus       164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  195 (201)
T 3s97_C          164 GAVLKIFNIQLEDEGIYECEAENIRGKDKHQA  195 (201)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEccCChhhCEEEEEEEEecCCceeeeE
Confidence            4566 999999999999999999887765433

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=89.71  E-value=0.23  Score=49.14  Aligned_cols=31  Identities=10%  Similarity=-0.006  Sum_probs=24.5

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .+++| |.+|+..|+|.|+|.|+|..+.....
T Consensus       199 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~  230 (268)
T 3mj6_A          199 NDGSIKLQTVKESDQGIYTCSIYVGKLESRKT  230 (268)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEECcCChhhCeEEEEEEEcCCceEEEE
Confidence            45666 99999999999999999966554433

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=89.60  E-value=0.27  Score=49.11  Aligned_cols=31  Identities=10%  Similarity=0.001  Sum_probs=25.3

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .++| |.+|+..|+|.|+|.|+|..+.....+
T Consensus       244 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  275 (292)
T 4dkd_C          244 VLTLNLDQVDFQHAGNYSCVASNVQGKHSTSM  275 (292)
T ss_dssp             EEEEEESSCCTTSCEEEEEEEECSSCEEEEEE
T ss_pred             EEEEEECccChhcCeEEEEEEecCCCCceeEE
Confidence            3566 899999999999999999887755443

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=89.48  E-value=0.27  Score=49.58  Aligned_cols=24  Identities=8%  Similarity=-0.400  Sum_probs=20.9

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      +| |.+|+..|+|.|+|.++|..+.
T Consensus        63 ~L~i~~v~~~d~G~Y~C~a~n~~g~   87 (305)
T 2nzi_A           63 QLIIASVTDDDATVYQVRATNQGGS   87 (305)
T ss_dssp             EEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             EEEEccCChhhCeEEEEEEEcCCCC
Confidence            56 9999999999999999996554

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=89.42  E-value=0.15  Score=45.00  Aligned_cols=21  Identities=14%  Similarity=0.150  Sum_probs=18.6

Q ss_pred             cEE-EEEEEecCCCcceeEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      .+| |.+|+.+|+|.|+|.+.+
T Consensus        80 ~sL~I~~v~~~DsG~Y~C~v~t  101 (123)
T 4gjt_B           80 GSVLLRNAVQADEGEYECRVST  101 (123)
T ss_dssp             CCEEEESCCSSSCSEEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEE
Confidence            456 999999999999999875

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=89.40  E-value=0.09  Score=50.10  Aligned_cols=33  Identities=9%  Similarity=-0.248  Sum_probs=28.1

Q ss_pred             eeeeEEecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         462 SLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       462 ~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      +.|..+..+|+| |.+|+..|+|.|+|.++|..+
T Consensus        57 ~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g   90 (182)
T 1hnf_A           57 KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKG   90 (182)
T ss_dssp             CTTEEECTTSCEEECSCCGGGCEEEEEEEEETTS
T ss_pred             CCeEEECCCCCEEECCCChhhCEEEEEEEEeCCC
Confidence            456677788888 999999999999999998654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=89.36  E-value=0.18  Score=48.30  Aligned_cols=52  Identities=6%  Similarity=-0.206  Sum_probs=31.8

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.|...........+.. ......+.++| |.+++..|+|.|+|.++|......
T Consensus        51 v~W~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~  103 (231)
T 3ojm_B           51 MRWLKNGKEFKQEHRIG-GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN  103 (231)
T ss_dssp             EEEEETTEECCGGGSTT-CCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEECCcccccccccc-ceeeecCcceEEEecCCcccCEEEEEEEecccCccc
Confidence            55655444433222211 11223344566 899999999999999999766543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=89.35  E-value=0.15  Score=48.14  Aligned_cols=32  Identities=6%  Similarity=-0.098  Sum_probs=25.9

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ..++| |.+++..|+|.|+|.|+|.++.....+
T Consensus       174 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~  206 (214)
T 3jz7_A          174 TSPVISVKNASSEYSGTYSCTVQNRVGSDQCML  206 (214)
T ss_dssp             TSSEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEE
Confidence            34566 999999999999999999887665443

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=89.28  E-value=0.17  Score=47.83  Aligned_cols=26  Identities=4%  Similarity=-0.192  Sum_probs=22.2

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      ..++| |.+|+.+|+|.|+|.++|...
T Consensus        56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (196)
T 3p2t_A           56 NKARFSIPSMTEDYAGRYRCYYRSPVG   82 (196)
T ss_dssp             SEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ceEEEEeccCCcccCceEEEEEeCCCc
Confidence            34556 899999999999999999766

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=89.24  E-value=0.14  Score=44.85  Aligned_cols=28  Identities=7%  Similarity=-0.077  Sum_probs=22.5

Q ss_pred             eeEEecccEE-EEEEEecCCCcceeEEEE
Q psy8879         464 RANVTGLGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       464 ~~n~~~~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      |+.+..+.+| |.+|+.+|+|.|+|.+..
T Consensus        64 R~~~~~~~sL~I~~v~~~D~G~Y~C~v~~   92 (117)
T 3q0h_A           64 RVAPGPGLGLTLQSLTVNDTGEYFCIYHT   92 (117)
T ss_dssp             TEEECSTTCEEECSCCGGGCEEEEEEEEE
T ss_pred             cEEeCCceEEEEeeCChhhCEEEEEEEEE
Confidence            4444556777 999999999999999864

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=89.15  E-value=0.36  Score=44.79  Aligned_cols=25  Identities=12%  Similarity=-0.011  Sum_probs=21.8

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      ..++| |.+++..|+|.|+|.+.|..
T Consensus        60 ~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (191)
T 1epf_A           60 DSSTLTIYNANIDDAGIYKCVVTAED   85 (191)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CceEEEEccCCcccCEEEEEEEEcCC
Confidence            44566 99999999999999999976

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=89.13  E-value=0.22  Score=52.35  Aligned_cols=63  Identities=10%  Similarity=-0.037  Sum_probs=41.7

Q ss_pred             cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ++....+.|..       +.|.........     ..+..+.+.++| |.+++.+|+|.|+|.|+|..+.....+.
T Consensus       326 ~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  396 (403)
T 3laf_A          326 ESMDIEFECAVSGKPVPTVNWMKNGDVVIP-----SDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQ  396 (403)
T ss_dssp             TTCCEEECCEEEEESCCEEEEEETTEECCC-----SSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cCCeEEEEEEEeeccCCEEEEEECCEECCC-----CCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEE
Confidence            34456677765       455554433331     122334456777 8899999999999999998888766543

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=89.09  E-value=0.16  Score=43.79  Aligned_cols=21  Identities=19%  Similarity=0.011  Sum_probs=19.3

Q ss_pred             EE-EEEEEecCCCcceeEEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +| |.+|+.+|+|.|.|.+.|.
T Consensus        72 ~L~I~~v~~~DsG~Y~C~~~n~   93 (113)
T 1h5b_A           72 TLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEECCCChhhCEEEEEEEecC
Confidence            56 9999999999999999985

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=89.01  E-value=0.24  Score=46.56  Aligned_cols=25  Identities=8%  Similarity=-0.174  Sum_probs=21.5

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      ..++| |.+|+.+|+|.|+|.++|..
T Consensus       147 ~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          147 VQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             SEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             ceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            44566 99999999999999999874

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=88.88  E-value=0.21  Score=48.38  Aligned_cols=53  Identities=8%  Similarity=-0.143  Sum_probs=32.2

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      +.|................ ....+.++| |.+++..|+|.|+|.++|.......
T Consensus        47 v~W~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~  100 (241)
T 3grw_A           47 ISWLKNGREFRGEHRIGGI-KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ  100 (241)
T ss_dssp             EEEEETTEECCGGGSTTCC-EEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             eEEEECCcccCCCCcccce-eeeccceEEEEEeCCcccCEEEEEEEeecCCceEE
Confidence            5666554444322221111 122344566 9999999999999999996655443

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=88.83  E-value=0.31  Score=46.69  Aligned_cols=26  Identities=15%  Similarity=-0.076  Sum_probs=21.8

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ++| |.+|+..|+|.|+|.|+|.....
T Consensus        54 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~   80 (202)
T 1vca_A           54 STLTMNPVSFGNEHSYLCTATCESRKL   80 (202)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEETTEEE
T ss_pred             cEEEECcCCHHHCEEEEEEEEECCceE
Confidence            445 88999999999999999976543

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=88.77  E-value=0.15  Score=42.32  Aligned_cols=18  Identities=11%  Similarity=-0.182  Sum_probs=16.5

Q ss_pred             EE-EEEEEecCCCcceeEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLL  489 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~  489 (694)
                      +| |.+++.+|+|.|+|.+
T Consensus        64 ~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A           64 TLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             EEEESSCCTTCCSEEEEEE
T ss_pred             EEEEcCCCcccCEEEEEEE
Confidence            45 8999999999999999

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.70  E-value=0.25  Score=41.44  Aligned_cols=39  Identities=8%  Similarity=-0.034  Sum_probs=25.4

Q ss_pred             EEEeccCccccccceeEeeeeEEeccc---EE-EEEEEecCCCcceeE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLG---TV-QVYVQLWTNYDPNCL  488 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~  488 (694)
                      +.|...........     ++.+..++   +| |.+|+.+|+|.|+|.
T Consensus        39 v~W~k~~~~l~~~~-----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A           39 VTWRKGLLELRASG-----KHQPSQEGLTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             CEEEESSCBCCSSS-----SEEEEEETTEEEEEEESCCTTTCSEEEEE
T ss_pred             EEEEeCCEECCCCC-----eEEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            55655554443222     33344445   56 999999999999997

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=88.66  E-value=0.16  Score=47.15  Aligned_cols=46  Identities=7%  Similarity=-0.057  Sum_probs=29.1

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      +.|........   .....+..+..+++| |.+++..|+|.|+|.++|..
T Consensus        34 v~W~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A           34 VSWLYHNEEVT---TISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             EEEEC-----C---BCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCccce---eccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            55555543333   112344455566777 99999999999999998864

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=88.65  E-value=0.14  Score=48.55  Aligned_cols=23  Identities=9%  Similarity=-0.107  Sum_probs=20.1

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEe
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      ++| |.+|+.+|+|.|+|.|+|..
T Consensus       156 ~~L~I~~v~~~D~G~Y~C~a~n~~  179 (196)
T 2d3v_A          156 ALFPVGPVTPSHRWMLRCYGSRRH  179 (196)
T ss_dssp             EEEECCCCBTTBCEEEEEEEEETT
T ss_pred             eEEEeeecCcccCeeEEEEEEccC
Confidence            555 88999999999999999953

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=88.51  E-value=0.23  Score=47.96  Aligned_cols=29  Identities=7%  Similarity=0.001  Sum_probs=23.7

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .+| |.+|+.+|+|.|+|.|+|..+.....
T Consensus        83 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~  112 (226)
T 4f80_A           83 AALRIHNVTASDSGKYLCYFQDGDFYEKAL  112 (226)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEeeCchHHCeeEEEEEECCCcEEEEE
Confidence            456 99999999999999999976655443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=88.45  E-value=0.25  Score=47.29  Aligned_cols=35  Identities=6%  Similarity=-0.123  Sum_probs=27.4

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      ..++| |.+++..|+|.|+|.|+|..+.....+...
T Consensus       183 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  218 (231)
T 3ojm_B          183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT  218 (231)
T ss_dssp             CTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEE
Confidence            34556 999999999999999999888765544433

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=88.40  E-value=0.22  Score=52.60  Aligned_cols=59  Identities=14%  Similarity=0.001  Sum_probs=38.2

Q ss_pred             cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      ++....+.|.+       +.|...++.......    + ....+++| |.+|+..|+|.|+|.|+|..+...
T Consensus       219 ~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~----~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  285 (384)
T 3kld_A          219 KGTTVKLECFALGNPVPTILWRRADGKPIARKA----R-RHKSNGILEIPNFQQEDAGSYECVAENSRGKNV  285 (384)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTCCCCCTTC----E-ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCcEEEEEEEeecCCCcEEEEeCCCccccccc----e-ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence            34556677765       666655543331111    1 12345667 999999999999999999876543

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=88.26  E-value=0.26  Score=49.16  Aligned_cols=29  Identities=10%  Similarity=-0.113  Sum_probs=24.7

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +| |.+|+..|+|.|+|.|+|..+.....+
T Consensus       249 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~  278 (284)
T 2rik_A          249 SIHILNVDSADIGEYQCKASNDVGSYTCVG  278 (284)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEcCCCcccCEEEEEEEEeCCCceeEEE
Confidence            45 889999999999999999988766544

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=88.25  E-value=0.28  Score=51.29  Aligned_cols=61  Identities=15%  Similarity=-0.031  Sum_probs=40.4

Q ss_pred             ceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         435 QSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       435 ~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +....+.|..       +.|..........     .++.+. +++| |.+|+.+|+|.|+|.|+|..+.....+.
T Consensus       309 g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-----~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  377 (382)
T 1cs6_A          309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQ-----NRIEVS-GGELRFSKLVLEDSGMYQCVAENKHGTVYASAE  377 (382)
T ss_dssp             TCCEEEECEEEEESCCEEEEEETTEECCCC-----SSEEEE-TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEEEEEeeeecCCEEEEEECCEECCCC-----ceEEEE-CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEE
Confidence            3446677765       5565554443322     223333 4566 9999999999999999999888765544

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=88.17  E-value=0.23  Score=47.78  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=23.8

Q ss_pred             EecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         467 VTGLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       467 ~~~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      +..+|.| |.+|+.+|+|.|+|.+++..
T Consensus        73 ~~~~~~L~i~~v~~~D~G~Y~C~~~~~~  100 (231)
T 2pet_A           73 LDSQGRLVLAEAQVGDERDYVCVVRAGA  100 (231)
T ss_dssp             ECTTCCEEESSCCGGGCEEEEEEEECGG
T ss_pred             cCCCceEEEcccCcccCceEEEEEEecC
Confidence            6666777 99999999999999999875

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=88.11  E-value=0.33  Score=46.64  Aligned_cols=23  Identities=9%  Similarity=-0.155  Sum_probs=20.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .++| |.+|+.+|+|.|+|.|+|.
T Consensus       136 ~~~L~i~~v~~~D~G~Y~C~a~n~  159 (204)
T 3sgj_C          136 NSDFYIPKATLKDSGSYFCRGLVG  159 (204)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CceEEECcCCcccCEEEEEEEEeC
Confidence            3455 8999999999999999993

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=88.09  E-value=0.81  Score=43.56  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=21.1

Q ss_pred             EEEEEecCCCcceeEEEEEeeecc
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.+|+.+|.|.|+|.|+|..+...
T Consensus       174 i~~v~~~d~G~Y~C~a~n~~g~~~  197 (222)
T 4i0k_A          174 VLRVVLGANGTYSCLVRNPVLQQD  197 (222)
T ss_dssp             EEEEECCTTCEEEEEEEETTTTEE
T ss_pred             EEEEEeCCCCEEEEEEECCCCCCc
Confidence            889999999999999999876543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=88.07  E-value=0.38  Score=48.75  Aligned_cols=32  Identities=16%  Similarity=0.039  Sum_probs=26.3

Q ss_pred             cEE-EEEEEecC-CCcceeEEEEEeeeccceeEE
Q psy8879         471 GTV-QVYVQLWT-NYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       471 gtL-~~~v~~~d-~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      ++| |.+|+..| +|.|+|.|+|..+.....+..
T Consensus       277 ~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l  310 (315)
T 1itb_B          277 TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL  310 (315)
T ss_dssp             EEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEE
T ss_pred             EEEEEeecCHHHcCCceEEEEecCCCceeEEEEE
Confidence            356 99999999 999999999998877655443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=88.06  E-value=0.35  Score=45.25  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=21.3

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      ++| |.+++..|+|.|+|.++|....
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~~~   93 (195)
T 2c5d_C           68 SQLRITSLQLSDTGQYQCLVFLGHQT   93 (195)
T ss_dssp             EEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             cEEEEEeccccCCcEEEEEEEeCCCc
Confidence            566 9999999999999999996543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=88.02  E-value=0.34  Score=44.84  Aligned_cols=30  Identities=13%  Similarity=-0.056  Sum_probs=25.1

Q ss_pred             EE-EEEEE-ecCCCcceeEEEEEeeeccceeE
Q psy8879         472 TV-QVYVQ-LWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       472 tL-~~~v~-~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +| |.+++ .+|+|.|+|.|+|..+.....+.
T Consensus       147 ~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~  178 (184)
T 3b5h_A          147 ELHIENLNMEADPGQYRCNGTSSKGSDQAIIT  178 (184)
T ss_dssp             EEEECSCCTTTSSEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeeccccccCceEEEEEEeCCCcceEEEE
Confidence            56 89999 89999999999999887665543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=87.94  E-value=0.21  Score=46.66  Aligned_cols=29  Identities=14%  Similarity=-0.027  Sum_probs=24.0

Q ss_pred             EE-EEEEE-ecCCCcceeEEEEEeeecccee
Q psy8879         472 TV-QVYVQ-LWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       472 tL-~~~v~-~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +| |.+++ .+|.|.|+|.|+|..+.....+
T Consensus       154 ~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~  184 (190)
T 2wv3_A          154 ELNIVNLQITEDPGEYECNATNSIGSASVST  184 (190)
T ss_dssp             EEEECSCCTTTSCEEEEEEEECSSCEEEEEE
T ss_pred             EEEEEeccccCCCEEEEEEEEecCCcceeEE
Confidence            56 88999 5999999999999887765543

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=87.88  E-value=0.44  Score=45.67  Aligned_cols=27  Identities=7%  Similarity=-0.251  Sum_probs=19.8

Q ss_pred             EecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         467 VTGLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       467 ~~~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      ....+.| |.+|+.+|+|.|+|.|+|..
T Consensus        60 ~~~~~~l~I~~v~~~D~G~Y~C~a~n~~   87 (213)
T 2x1w_L           60 WDSKKGFTIPSYMISYAGMVFCEAKIND   87 (213)
T ss_dssp             EETTTEEEEEGGGTTTCSEEEEEEC---
T ss_pred             ccCCccEEEccCChhcCceEEEEEEECC
Confidence            3344445 99999999999999999843

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=87.88  E-value=0.25  Score=46.70  Aligned_cols=27  Identities=19%  Similarity=0.064  Sum_probs=22.7

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      ++| |.+|+.+|+|.|+|.+.|..+...
T Consensus        67 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~   94 (202)
T 3bp6_B           67 ALFHIPSVQVRDSGQYRCLVICGAAWDY   94 (202)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEEEECCCCHHHCcEEEEEEEeCCCcce
Confidence            566 899999999999999999766543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=87.78  E-value=0.42  Score=46.22  Aligned_cols=33  Identities=9%  Similarity=-0.124  Sum_probs=26.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .++| |.+++..|+|.|+|.|+|..+.....+..
T Consensus       181 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  214 (241)
T 3grw_A          181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL  214 (241)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             ceEEEECcCCcccCcEEEEEEecCcceEEEEEEE
Confidence            4556 88999999999999999987776544433

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=87.72  E-value=0.21  Score=46.72  Aligned_cols=31  Identities=10%  Similarity=-0.174  Sum_probs=24.9

Q ss_pred             cEE-EEE-EEecCCCcceeEEEEEeeeccceeE
Q psy8879         471 GTV-QVY-VQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       471 gtL-~~~-v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ++| +.+ ++..|+|.|+|.|+|..+.....+.
T Consensus       160 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~  192 (197)
T 2j8h_A          160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE  192 (197)
T ss_dssp             EEEECTTCCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEE
Confidence            455 777 9999999999999998887655443

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=87.58  E-value=0.38  Score=44.47  Aligned_cols=25  Identities=8%  Similarity=-0.198  Sum_probs=21.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      .++| |.+++.+|+|.|+|.|+|..+
T Consensus       136 ~~~L~i~~v~~~d~G~Y~C~a~n~~~  161 (175)
T 1fnl_A          136 NSDFHIPKATLKDSGSYFCRGLVGSK  161 (175)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEEcccChhhCeEEEEEEEcCCC
Confidence            3555 889999999999999999544

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=87.48  E-value=0.22  Score=41.79  Aligned_cols=39  Identities=8%  Similarity=-0.002  Sum_probs=24.9

Q ss_pred             EEEeccCccccccceeEeeeeEEecccE---E-EEEEEecCCCcceeE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGT---V-QVYVQLWTNYDPNCL  488 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gt---L-~~~v~~~d~G~YtC~  488 (694)
                      +.|.........     ..+..+..++.   | |.+|+.+|+|.|+|.
T Consensus        39 v~W~k~~~~l~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2e7b_A           39 VKWCYGNNVLRP-----GDKYSLRQEGAMLELVVRNLRPQDSGRYSCS   81 (103)
T ss_dssp             CEEEESSSBCCC-----SSSEEEEECSSEEEEEECSCCTTTCCCEEEE
T ss_pred             eEEEECCEECCC-----CCcEEEEEcCCEEEEEEccCCcccCEEEEEE
Confidence            556654443331     12333444453   5 999999999999997

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=87.44  E-value=0.15  Score=43.63  Aligned_cols=22  Identities=9%  Similarity=-0.268  Sum_probs=19.5

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .+| |.+|+.+|+|.|.|.+.|.
T Consensus        71 ~~L~I~~v~~~DsG~Y~C~~~n~   93 (108)
T 1jhl_L           71 FTLTISSLEPEDFAMYICQQHNE   93 (108)
T ss_dssp             EEEEECSCCTTCCSEEEEEECSS
T ss_pred             EEEEECCCCHHHCEEEEEEEccC
Confidence            456 9999999999999999874

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=87.44  E-value=0.25  Score=45.94  Aligned_cols=31  Identities=10%  Similarity=-0.117  Sum_probs=24.3

Q ss_pred             cEE-EEEEE-ecCCCcceeEEEEEeeeccceeE
Q psy8879         471 GTV-QVYVQ-LWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       471 gtL-~~~v~-~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ++| +.+++ .+|+|.|+|.|+|..+.....+.
T Consensus       159 ~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~  191 (197)
T 3lcy_A          159 THLVMKNVQRKTHAGKYKVQLSNVFGTVDAILD  191 (197)
T ss_dssp             EEEEESSCCHHHHCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEccccchhhCceEEEEEEcCcCceEEEEE
Confidence            455 78887 48999999999999887765544

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=87.41  E-value=0.32  Score=46.32  Aligned_cols=24  Identities=8%  Similarity=-0.058  Sum_probs=20.7

Q ss_pred             EE-EEEEEe-cCCCcceeEEEEEeee
Q psy8879         472 TV-QVYVQL-WTNYDPNCLLTITLYI  495 (694)
Q Consensus       472 tL-~~~v~~-~d~G~YtC~~~n~~~~  495 (694)
                      +| |.+++. .|+|.|+|.++|....
T Consensus        65 ~L~i~~v~~~~d~G~Y~C~~~n~~g~   90 (212)
T 2yd1_A           65 ILRIEPVRAGRDDAPYECVAENGVGD   90 (212)
T ss_dssp             EEEESSCCTTTTCSEEEEEEECSSSC
T ss_pred             EEEEEecCCCCcCceEEEEEEeCCCC
Confidence            55 889999 9999999999987654

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=87.40  E-value=0.15  Score=45.95  Aligned_cols=35  Identities=11%  Similarity=-0.065  Sum_probs=27.3

Q ss_pred             ccEE-EEEEEe-cCCCcceeEEEEEeeeccceeEEee
Q psy8879         470 LGTV-QVYVQL-WTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       470 ~gtL-~~~v~~-~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      +.+| +.+++. +|+|.|+|.++..-...+..+..+.
T Consensus        77 naSL~i~~v~~~sD~G~YtC~v~~~~~~~~~~i~Lkv  113 (127)
T 2jjs_C           77 DASLKMDKSDAVSHTGNYTCEVTELTREGETIIELKY  113 (127)
T ss_dssp             BCCEEEEHHHHHTSCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEEEcccccccCCcEEEEEEEeCCceEEEEEEEEE
Confidence            3456 999999 6999999999998776666665553

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=87.31  E-value=0.46  Score=43.27  Aligned_cols=26  Identities=15%  Similarity=-0.040  Sum_probs=22.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      .+.| |.+++..|+|.|+|.++|..+.
T Consensus       133 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A          133 DPTFSIPQANHSHSGDYHCTGNIGYTL  159 (170)
T ss_dssp             CCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCeEEEEeccccCCEEEEEEEEeCcCc
Confidence            3455 8899999999999999998765

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=87.31  E-value=0.36  Score=50.55  Aligned_cols=62  Identities=13%  Similarity=-0.104  Sum_probs=41.1

Q ss_pred             ccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         433 LDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       433 ~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      .++....+.|..       +.|........ .     .++.+.+ ++| |.+++.+|+|.|+|.|+|..+.....+.
T Consensus       322 ~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~-~-----~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~  391 (395)
T 1bih_A          322 KQGQDVTIPCKVTGLPAPNVVWSHNAKPLS-G-----GRATVTD-SGLVIKGVKNGDKGYYGCRATNEHGDKYFETL  391 (395)
T ss_dssp             CTTSCEEEECEEEEESCCCCEEEETTEECC-S-----SSEEEET-TEEEESSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred             cCCCeEEEEEEECcccCCeeEEEECCEECC-C-----CceEEEC-CEEEEeeCCcccCEEEEEEEEccCCCceEEEE
Confidence            344456777876       45554443332 1     2444444 466 9999999999999999999888765443

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.29  E-value=0.13  Score=44.55  Aligned_cols=17  Identities=6%  Similarity=-0.234  Sum_probs=15.6

Q ss_pred             EE-EEEEEecCCCcceeE
Q psy8879         472 TV-QVYVQLWTNYDPNCL  488 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~  488 (694)
                      +| |.+++.+|+|.|+|.
T Consensus        71 ~L~I~~v~~~D~G~Y~C~   88 (115)
T 2cr6_A           71 VLTLRQLALKDSGTIYFE   88 (115)
T ss_dssp             CBEECSCCTTTCEEEEEE
T ss_pred             EEEEcCCChhhCEEEEEE
Confidence            45 999999999999999

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=87.29  E-value=0.15  Score=48.40  Aligned_cols=32  Identities=9%  Similarity=-0.031  Sum_probs=26.1

Q ss_pred             eeEEecccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         464 RANVTGLGTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       464 ~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      |+.+..+++| |.+|+.+|+|.|+|.+.+....
T Consensus        63 R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~   95 (193)
T 2if7_A           63 RLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSA   95 (193)
T ss_dssp             TEEECTTCCEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             cEEECCCeEEEECCCCcccCceEEEEEEecCCC
Confidence            4455567778 9999999999999999886554

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=87.21  E-value=0.1  Score=44.21  Aligned_cols=24  Identities=13%  Similarity=-0.021  Sum_probs=20.6

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      .+| |.+|+.+|+|.|+|.+.+...
T Consensus        72 ~sL~I~~v~~~D~G~Y~C~v~~~~~   96 (109)
T 2oyp_A           72 VSLIIKNVTLDDHGTYCCRIQFPGL   96 (109)
T ss_dssp             CCEEECSCCGGGCEEEEEEECCSST
T ss_pred             EeEEEccCCChhCeEEEEEEEcCCc
Confidence            456 999999999999999998643

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=87.20  E-value=0.85  Score=45.96  Aligned_cols=51  Identities=14%  Similarity=0.025  Sum_probs=33.5

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.|...........  ...++....+++| |.+++..|+|.|+|.++|..+...
T Consensus       140 v~W~k~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  191 (304)
T 2yd9_A          140 ITWFKDFLPVDPSA--SNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY  191 (304)
T ss_dssp             EEEEETTEECCGGG--GTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEECCEECcCCC--CcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEE
Confidence            55655444333111  1123345566777 999999999999999999776554

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=87.09  E-value=0.26  Score=42.42  Aligned_cols=22  Identities=5%  Similarity=-0.093  Sum_probs=19.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +.+| |.+++.+|+|.|.|.+.+
T Consensus        65 ~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A           65 SFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEECCCChhcCEEEEEEEEc
Confidence            3456 999999999999999998

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=86.98  E-value=1.6  Score=41.45  Aligned_cols=24  Identities=13%  Similarity=-0.083  Sum_probs=19.4

Q ss_pred             EEEecCCCcceeEEEEEeeeccce
Q psy8879         476 YVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       476 ~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .|+..|.|.|+|.|+|..+.....
T Consensus       181 ~v~~~d~g~Y~C~a~n~~g~~~~~  204 (222)
T 3sbw_C          181 RINTTTNEIFYCTFRRLDPEENHT  204 (222)
T ss_dssp             EEECCTTCEEEEEEEETTTTEEEE
T ss_pred             EEeccCCcEEEEEEEeCccceeeE
Confidence            577899999999999987755443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=86.91  E-value=0.21  Score=47.20  Aligned_cols=29  Identities=14%  Similarity=-0.003  Sum_probs=24.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      +++| |.+++.+|+|.|+|.|+|..+....
T Consensus       164 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s  193 (212)
T 2v9r_A          164 GGKLMITYTRKSDAGKYVCVGTNMVGERES  193 (212)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCeEEEeeCCHhhCeeEEEEEecccCceec
Confidence            4566 8899999999999999998776543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=86.78  E-value=0.21  Score=50.36  Aligned_cols=30  Identities=10%  Similarity=-0.199  Sum_probs=25.1

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ++| |.+|+..|+|.|+|.|+|..+.....+
T Consensus       276 ~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~  306 (312)
T 2y23_A          276 CTLLITEFSKKDAGIYEVILKDDRGKDKSRL  306 (312)
T ss_dssp             EEEEECSCSGGGCEEEEEEEESTTCCEEEEE
T ss_pred             EEEEECcCCHHHCEEEEEEEEcCCCceeeee
Confidence            566 999999999999999999887765543

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=86.76  E-value=0.25  Score=46.55  Aligned_cols=28  Identities=11%  Similarity=-0.028  Sum_probs=24.1

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ..++| |.+++.+|+|.|+|.|+|..+..
T Consensus       167 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          167 KSGDLIFDPVTAFDSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             CCceEEEEecChhhCcEEEEEEccccCCc
Confidence            34566 89999999999999999988766

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=86.70  E-value=0.43  Score=44.30  Aligned_cols=26  Identities=8%  Similarity=-0.322  Sum_probs=21.5

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      .+| |.+++..|+|.|+|.++|.....
T Consensus        63 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~   89 (194)
T 2a38_A           63 AKLTIPAVTKANSGRYSLKATNGSGQA   89 (194)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCceE
Confidence            355 88999999999999999866543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=86.67  E-value=0.29  Score=47.25  Aligned_cols=18  Identities=11%  Similarity=-0.306  Sum_probs=17.1

Q ss_pred             EEEEEecCCCcceeEEEE
Q psy8879         474 QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n  491 (694)
                      |.+|+..|+|.|+|.|+|
T Consensus        65 I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A           65 MEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             ESCCCGGGCEEEEEEEEE
T ss_pred             ECCCChhhCEEEEEEEEC
Confidence            999999999999998887

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=86.64  E-value=0.17  Score=44.67  Aligned_cols=29  Identities=17%  Similarity=-0.010  Sum_probs=23.4

Q ss_pred             eeEEe-cccEE-EEEEEecCCCcceeEEEEE
Q psy8879         464 RANVT-GLGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       464 ~~n~~-~~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      |..+. ++++| |.+|+..|+|.|+|.+.+.
T Consensus        65 R~~l~~~~~sL~I~nv~~~DsG~Y~c~v~~~   95 (121)
T 2edo_A           65 RVRLDPQSGALYISKVQKEDNSTYIMRVLKK   95 (121)
T ss_dssp             TCEECTTTCCEEESSCCGGGCSEEEEEEEET
T ss_pred             cEEEeCCCceEEEeCCCHHHCeEEEEEEEcC
Confidence            44444 56777 9999999999999999864

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=86.63  E-value=0.28  Score=45.98  Aligned_cols=24  Identities=8%  Similarity=-0.049  Sum_probs=20.5

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      .++| |.+|+.+|+|.|+|.++|..
T Consensus       143 ~~~L~i~~v~~~D~G~Y~C~a~n~~  167 (184)
T 2gi7_A          143 RASFPIITVTAAHSGTYRCYSFSSR  167 (184)
T ss_dssp             EESSSEEEETTCCSEEEEEEEECTT
T ss_pred             eEEEEEccCCccCCeEEEEEEEeCC
Confidence            3445 99999999999999999963

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=86.55  E-value=0.61  Score=43.86  Aligned_cols=28  Identities=4%  Similarity=0.018  Sum_probs=23.2

Q ss_pred             EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +.+++.+|.|.|+|.|+|..+.......
T Consensus       161 i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  188 (202)
T 3bp6_B          161 VLRLKPQPSRNFSCMFWNAHMKELTSAI  188 (202)
T ss_dssp             EEEECCCTTCCEEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEEcCCcccccEEE
Confidence            6689999999999999999887654443

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=86.53  E-value=0.82  Score=46.52  Aligned_cols=26  Identities=12%  Similarity=-0.111  Sum_probs=21.9

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      .+.| |.+|+.+|+|.|+|.++|....
T Consensus       173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          173 KANFSIGPMMLALAGTYRCYGSVTHTP  199 (316)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred             eEEEEECCCChhhCceEEEEEecCCCC
Confidence            3455 8999999999999999997653

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=86.49  E-value=0.5  Score=44.17  Aligned_cols=27  Identities=4%  Similarity=-0.155  Sum_probs=22.1

Q ss_pred             ecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         468 TGLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      .+.+.| |.+|+.+|+|.|+|.++|...
T Consensus        49 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   76 (184)
T 2gi7_A           49 QDQAVLFIPAMKRSLAGRYRCSYQNGSL   76 (184)
T ss_dssp             ESSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CcccEEEECcCChhhCceEEEEEEcCCC
Confidence            345566 889999999999999999543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=86.16  E-value=0.37  Score=47.73  Aligned_cols=32  Identities=13%  Similarity=-0.143  Sum_probs=23.8

Q ss_pred             cccEEEEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         469 GLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       469 ~~gtL~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ..|.+. .|+.+|+|.|+|.|+|..+.....+.
T Consensus       228 ~~g~~~-~v~~~d~G~Y~C~a~N~~G~~~~~~~  259 (265)
T 2oz4_A          228 PIGESV-TVTRDLEGTYLCRARSTQGEVTREVT  259 (265)
T ss_dssp             CTTSCE-ECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCcEE-EeehhhCeEEEEEEECCCCcEEEEEE
Confidence            345543 48899999999999998876655443

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=86.08  E-value=0.14  Score=42.43  Aligned_cols=23  Identities=4%  Similarity=-0.190  Sum_probs=18.5

Q ss_pred             cccEE-EEEE-EecCCCcceeEEEE
Q psy8879         469 GLGTV-QVYV-QLWTNYDPNCLLTI  491 (694)
Q Consensus       469 ~~gtL-~~~v-~~~d~G~YtC~~~n  491 (694)
                      ..++| |.+| +.+|+|.|+|+|..
T Consensus        42 ~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           42 HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CCCEEEECccCccCcCEEEEEEEcc
Confidence            34666 8896 78999999999864

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=86.08  E-value=0.19  Score=49.37  Aligned_cols=26  Identities=15%  Similarity=0.096  Sum_probs=21.5

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +| |.+|+.+|+|.|+|.+.+..+...
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~  109 (248)
T 3pv7_A           83 SLRLPGIQLEEAGEYRCEVVVTPLKAQ  109 (248)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEeCCCCHHHCeEEEEEEEeCCccce
Confidence            45 999999999999999998655443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=86.04  E-value=0.48  Score=49.65  Aligned_cols=68  Identities=12%  Similarity=-0.090  Sum_probs=42.5

Q ss_pred             cceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         434 DQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       434 ~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      ++....+.|..       +.|...........  ...+.... .++| |.+++.+|+|.|+|.|+|..+..........
T Consensus       326 ~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~--~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  401 (404)
T 3p3y_A          326 PGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP--PNPNREVA-GDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV  401 (404)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEETTEEGGGSC--CCTTEEEE-TTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCcEEEEEEccccCCCceEEEECCEecCCCC--CCceEEec-CCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEE
Confidence            34456677765       55655444333111  11122223 4556 9999999999999999999888776655443

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=85.96  E-value=0.5  Score=40.60  Aligned_cols=23  Identities=4%  Similarity=-0.246  Sum_probs=19.5

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .+.+ |.+|+..|+|.|+|.+.+.
T Consensus        59 ~~~l~i~~v~~~dsG~Y~C~~~~~   82 (108)
T 4hwn_A           59 SSEFQIPTASEDHSGSYWCEAATE   82 (108)
T ss_dssp             CCEEEESSCCGGGCEEEEEEEECT
T ss_pred             ccEEEeCccCcccCeEEEEEEEeC
Confidence            3445 8899999999999999974

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=85.85  E-value=0.21  Score=47.09  Aligned_cols=28  Identities=7%  Similarity=-0.101  Sum_probs=23.5

Q ss_pred             ecccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         468 TGLGTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      .++++| |.+|+.+|+|.|+|.++|....
T Consensus        62 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~   90 (201)
T 1dr9_A           62 TNNLSIVILALRPSDEGTYECVVLKYEKD   90 (201)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEEEECCTT
T ss_pred             CCCcEEEEecccchhCeEEEEEEEcCCCC
Confidence            455677 9999999999999999996643

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=85.84  E-value=0.24  Score=46.87  Aligned_cols=28  Identities=7%  Similarity=-0.130  Sum_probs=22.7

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ++++| |.+|+.+|+|.|+|.|.|.....
T Consensus        81 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~  109 (225)
T 4fmk_A           81 RDATLAFRGLRVEDEGNYTCEFATFPNGT  109 (225)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEEETTEE
T ss_pred             CcEEEEEccCCHHHCcceEEEEEeCCCcc
Confidence            34566 99999999999999999865443

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=85.65  E-value=0.24  Score=50.13  Aligned_cols=26  Identities=15%  Similarity=-0.079  Sum_probs=22.3

Q ss_pred             EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.+|+.+|+|.|+|.|+|.++..+..
T Consensus       268 i~~v~~~d~G~Y~C~A~N~~G~~~~~  293 (308)
T 4fom_A          268 VHPLTFNYSGVYICKVTNSLGQRSDQ  293 (308)
T ss_dssp             CSCCCSCCCSEEEEEEEETTEEEEEE
T ss_pred             ECCCChhhCEEEEEEEEeCCCcEEEE
Confidence            67899999999999999998876543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=85.60  E-value=0.22  Score=48.12  Aligned_cols=28  Identities=4%  Similarity=-0.161  Sum_probs=22.7

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      ..+| |.+|+.+|+|.|+|.|+|..+...
T Consensus        68 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~   96 (203)
T 4fa8_A           68 TFFLVVTAANISHDGNYLCRMKLGETEVT   96 (203)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEEEccCCHHHCeEEEEEEEcCCCcEE
Confidence            3455 999999999999999999655543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=85.53  E-value=0.18  Score=47.61  Aligned_cols=26  Identities=4%  Similarity=-0.245  Sum_probs=22.7

Q ss_pred             ccEE-EEE-EEecCCCcceeEEEEEeee
Q psy8879         470 LGTV-QVY-VQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       470 ~gtL-~~~-v~~~d~G~YtC~~~n~~~~  495 (694)
                      +++| |.+ ++.+|+|.|+|.|+|..+.
T Consensus        43 ~~~L~I~~~~~~~D~G~Y~C~a~n~~g~   70 (186)
T 1jbj_A           43 DKHLVLQDFSEVEDSGYYVCYTPASNKN   70 (186)
T ss_dssp             CSEEEEESCCTTTSCEEEEEECSSCCCC
T ss_pred             CCEEEECCCCccccCEEEEEEEEeCCCc
Confidence            4567 889 9999999999999998766

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=85.52  E-value=0.23  Score=43.03  Aligned_cols=26  Identities=12%  Similarity=-0.019  Sum_probs=20.2

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      ++++| |.+|+.+|+|.|+|.+.+...
T Consensus        79 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~  105 (124)
T 1neu_A           79 KDGSIVIHNLDYSDNGTFTCDVKNPPD  105 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEC---
T ss_pred             CeEEEEEccCChhhCEEEEEEEEcCCC
Confidence            34566 999999999999999998654

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=85.49  E-value=0.68  Score=42.69  Aligned_cols=23  Identities=4%  Similarity=-0.122  Sum_probs=20.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .++| |.+++.+|+|.|+|.|+|.
T Consensus       133 ~~~L~i~~v~~~d~G~Y~C~a~n~  156 (176)
T 1f2q_A          133 NHNISITNATVEDSGTYYCTGKVW  156 (176)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEEECCCCcccCEEEEEEEEeC
Confidence            3556 8899999999999999995

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=85.46  E-value=0.2  Score=42.81  Aligned_cols=25  Identities=8%  Similarity=-0.177  Sum_probs=21.2

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      ++++| |.+|+.+|+|.|+|.+.+..
T Consensus        71 ~~~sL~I~~v~~~DsG~Y~C~v~~~~   96 (110)
T 2ptt_A           71 NNGALHISNVRKEDKGTYYMRVLRET   96 (110)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEESSS
T ss_pred             CCccEEECCCCcccCeEEEEEEEcCC
Confidence            56677 99999999999999997643

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=85.38  E-value=0.55  Score=40.06  Aligned_cols=21  Identities=10%  Similarity=0.066  Sum_probs=18.9

Q ss_pred             EE-EEEEEecCCCcceeEEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +| |.+|+..|+|.|+|.+.|.
T Consensus        57 ~l~I~~v~~~dsG~Y~C~~~n~   78 (105)
T 2vsd_A           57 EFSFAVTNLEDAGTYQCRYQVS   78 (105)
T ss_dssp             EEEEECCSGGGCEEEEEEEEEE
T ss_pred             EEEECCCCHHHCeEEEEEEEcC
Confidence            44 8899999999999999996

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=85.02  E-value=0.59  Score=43.50  Aligned_cols=24  Identities=4%  Similarity=-0.103  Sum_probs=20.8

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .+++| |.+++..|+|.|+|.++|.
T Consensus        54 ~~~~L~i~~~~~~d~G~Y~C~~~n~   78 (190)
T 2wv3_A           54 SNMEYRINKPRAEDSGEYHCVYHFV   78 (190)
T ss_dssp             SEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ccEEEEEecCCcccCEEEEEEEEeC
Confidence            34566 8999999999999999986

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=85.00  E-value=1  Score=42.27  Aligned_cols=26  Identities=12%  Similarity=0.036  Sum_probs=21.8

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +| |.+++..|.|.|+|.|+|..+...
T Consensus       182 ~L~i~~~~~~d~g~YtC~a~N~~~~~~  208 (225)
T 4fmk_A          182 RYSLVPVGRADGVKVTCRVEHESFEEP  208 (225)
T ss_dssp             EEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred             EEEEeeCCHHHCCEEEEEEEcCCCCeE
Confidence            45 888999999999999999776554

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.89  E-value=0.87  Score=39.78  Aligned_cols=46  Identities=9%  Similarity=-0.139  Sum_probs=28.4

Q ss_pred             EEEeccCcccccccee-----EeeeeEEeccc---EE-EEEEEecCCCcceeEEE
Q psy8879         445 ILALVPTLTSQPLSYV-----TSLRANVTGLG---TV-QVYVQLWTNYDPNCLLT  490 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i-----~~~~~n~~~~g---tL-~~~v~~~d~G~YtC~~~  490 (694)
                      +.|.......+.....     ...++.+..+|   +| |.+|+.+|+|.|+|.+-
T Consensus        38 v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~   92 (112)
T 2e6q_A           38 GTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSC   92 (112)
T ss_dssp             CEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEE
T ss_pred             EEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEE
Confidence            6676666555522100     00055566666   45 99999999999987443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=84.83  E-value=0.57  Score=43.72  Aligned_cols=27  Identities=4%  Similarity=-0.102  Sum_probs=21.0

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      ..++| |.+++  |+|.|+|.|+|..+...
T Consensus       156 ~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~  183 (195)
T 2c5d_C          156 PQRSLHVPGLN--KTSSFSCEAHNAKGVTT  183 (195)
T ss_dssp             CCEEEEECCCS--SCEEEEEEEEETTEEEE
T ss_pred             CCCeEEEcccc--cCceEEEEEEcCCCceE
Confidence            44566 66665  89999999999887664

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=84.81  E-value=0.53  Score=47.97  Aligned_cols=61  Identities=10%  Similarity=-0.061  Sum_probs=39.2

Q ss_pred             cccceeeeeceeE--------EEEeccCccccccceeEeeeeEEecccEE-EE-EEEecCCCcceeEEEEEeeecccee
Q psy8879         432 ILDQSALVLGCSE--------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QV-YVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       432 ~~~~~~~~l~c~~--------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~-~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      ..++....+.|..        +.|...++.....       ..+ ..++| |. +|+..|+|.|+|.|+|..+.....+
T Consensus       244 ~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~-------~~~-~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~  314 (331)
T 3u83_A          244 YLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-------VEA-QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQV  314 (331)
T ss_dssp             BTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT-------EEE-ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc-------cee-cCcEEEEeCCCccccCeEEEEEEEeccccceEEE
Confidence            3344556677766        4555444433311       112 34666 77 7999999999999999988764443

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=84.76  E-value=0.38  Score=42.13  Aligned_cols=20  Identities=10%  Similarity=0.056  Sum_probs=18.0

Q ss_pred             EE-EEEEEecCCCcceeEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +| |.+|+.+|+|.|+|.+.+
T Consensus        94 sL~I~~v~~~D~G~Y~C~v~~  114 (128)
T 3r0n_A           94 TLALHGLTVEDEGNYTCEFAT  114 (128)
T ss_dssp             CEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEccCCchhCeEEEEEEEe
Confidence            56 999999999999999865

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=84.66  E-value=0.25  Score=43.64  Aligned_cols=25  Identities=12%  Similarity=-0.120  Sum_probs=21.5

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      +.+| |.+|+.+|+|.|+|.+.+...
T Consensus        91 ~~sL~I~~v~~~D~G~Y~C~v~~~~~  116 (135)
T 1xt5_A           91 APTLRLTHVHPQDGGRYWCQVAQWSI  116 (135)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCeEEECCCChhhCcEEEEEEEcCCc
Confidence            4566 999999999999999998654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=84.54  E-value=0.87  Score=43.09  Aligned_cols=21  Identities=5%  Similarity=-0.066  Sum_probs=17.2

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .++| |.+|+  |+|.|+|.+++.
T Consensus       162 ~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          162 QADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EEEEEEEECC--SCEEEEEEEEET
T ss_pred             EEEEEeCCcC--CCeeEEEEEEcC
Confidence            3555 88898  999999999863

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=84.53  E-value=0.37  Score=45.48  Aligned_cols=26  Identities=4%  Similarity=-0.175  Sum_probs=21.4

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      ..++| |.+|+.+|+|.|+|.+.|...
T Consensus        56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (196)
T 2d3v_A           56 NKARFSIPSMTEHHAGRYRCYYYSPAG   82 (196)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cccEEEeccCChhHCeEEEEEEeCCCC
Confidence            34556 889999999999999988644

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=84.48  E-value=0.45  Score=45.17  Aligned_cols=23  Identities=4%  Similarity=-0.204  Sum_probs=20.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +++| |.+|+.+|+|.|+|.++|.
T Consensus        70 ~~~L~I~~v~~~D~G~Y~C~~~~~   93 (213)
T 3r06_A           70 DSSFTISSLESEDIGSYYCQQYYN   93 (213)
T ss_dssp             EEEEEESSCCGGGCSEEEEEECSS
T ss_pred             EEEEEECCCCcccCEEEEEecccC
Confidence            3466 9999999999999999875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=84.47  E-value=1.9  Score=46.42  Aligned_cols=23  Identities=9%  Similarity=-0.188  Sum_probs=20.7

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .++| |.+|+..|+|.|+|.|+|.
T Consensus       289 ~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          289 ILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             EEEEEESSCCTTTCEEEEEEETTE
T ss_pred             EEEEEEeecCHHHCEEEEEEEecC
Confidence            4556 9999999999999999998

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=84.36  E-value=0.66  Score=46.20  Aligned_cols=26  Identities=12%  Similarity=-0.061  Sum_probs=21.7

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      ..++| |.+++.+|+|.|+|.++|..+
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~~~n~~g   86 (291)
T 1qz1_A           60 DSSTLTIYNANIDDAGIYKCVVTAEDG   86 (291)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred             CeEEEEEecCCCCCCEEEEEEEEcCCC
Confidence            34566 889999999999999998753

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=84.33  E-value=0.32  Score=44.83  Aligned_cols=22  Identities=14%  Similarity=-0.058  Sum_probs=19.8

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      ++| |.+++..|+|.|+|.++|.
T Consensus        60 ~~L~i~~~~~~d~G~Y~C~~~~~   82 (182)
T 1rhf_A           60 GFLSLKSVERSDAGRYWCQVEDG   82 (182)
T ss_dssp             EEEEESSCCGGGCEEEEEEESSC
T ss_pred             EEEEEeecCcccCeEEEEEEEcC
Confidence            566 8999999999999999986

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=84.32  E-value=0.15  Score=49.16  Aligned_cols=26  Identities=8%  Similarity=-0.238  Sum_probs=23.3

Q ss_pred             ccEE-EEEE-EecCCCcceeEEEEEeee
Q psy8879         470 LGTV-QVYV-QLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       470 ~gtL-~~~v-~~~d~G~YtC~~~n~~~~  495 (694)
                      .++| |.+| +.+|+|.|+|.|+|..+.
T Consensus       165 ~~~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          165 EDHLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             TTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             CCEEEEeeCCccccCEEEEEEeccCCCC
Confidence            5666 8999 999999999999998885

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=84.30  E-value=0.28  Score=46.17  Aligned_cols=28  Identities=11%  Similarity=0.013  Sum_probs=23.1

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +++| |.+|+.+|+|.|+|.++|..+..+
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~  111 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPGVAN  111 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCCccc
Confidence            4566 999999999999999998765443

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=84.22  E-value=0.21  Score=42.67  Aligned_cols=30  Identities=23%  Similarity=0.083  Sum_probs=22.4

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE---eeecccee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT---LYIDGDVI  500 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~---~~~~~~~~  500 (694)
                      .+| |.+++.+|+|.|.|.+.+.   .|..+..+
T Consensus        71 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~gT~l  104 (108)
T 1qfw_M           71 FTLTISSVQAEDFADYHCGQTYNHPYTFGGGTKL  104 (108)
T ss_dssp             EEEEESSCCTTCCSEEEEEECSSSSCEECCCEEE
T ss_pred             EEEEECCCChhhCEEEEEEEccCCceEECCCEEE
Confidence            355 9999999999999999873   34444433

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=84.22  E-value=0.31  Score=42.53  Aligned_cols=24  Identities=13%  Similarity=-0.015  Sum_probs=20.0

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      +.+| |.+|+.+|+|.|.|.++.-.
T Consensus        77 ~~sL~I~~v~~~D~G~Y~C~v~~~~  101 (119)
T 2pnd_A           77 DVSLQINTLQMDDRNHYTCEVTWQT  101 (119)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEEC
T ss_pred             CEEEEEccCCcccCEEEEEEEEECc
Confidence            4456 99999999999999997643

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=84.05  E-value=0.46  Score=40.61  Aligned_cols=29  Identities=10%  Similarity=0.034  Sum_probs=22.1

Q ss_pred             cEE-EEEEEecCCCcceeEEEE---Eeeeccce
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTI---TLYIDGDV  499 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n---~~~~~~~~  499 (694)
                      .+| |.+++.+|+|.|.|.+.+   ..|..|..
T Consensus        72 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~  104 (109)
T 1pew_A           72 ASLTISGLKTEDEADYYCQSYDARNVVFGGGTR  104 (109)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             EEEEECCCChhhCEEEEEEEEeCCceEECCCEE
Confidence            355 999999999999999987   34444443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=83.98  E-value=0.46  Score=45.57  Aligned_cols=22  Identities=5%  Similarity=0.006  Sum_probs=19.3

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      ++| |.+++.+|+|.|+|.++|.
T Consensus        54 ~~L~i~~v~~~D~G~Y~C~a~n~   76 (204)
T 3sgj_C           54 SSYFIDAATVDDSGEYRCQTQLS   76 (204)
T ss_dssp             SEEEESSCCGGGCEEEEEEETTS
T ss_pred             cEEEEecccccCCEEEEEEeCCC
Confidence            566 8999999999999999874

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=83.94  E-value=0.81  Score=43.32  Aligned_cols=25  Identities=8%  Similarity=-0.152  Sum_probs=21.2

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      ++++| |.+|+.+|+|.|+|.+.|..
T Consensus        66 ~~~~L~I~~v~~~D~G~Y~C~~~~~~   91 (211)
T 3tv3_L           66 NTASLTVSGLQTDDEAVYYCGSLVGN   91 (211)
T ss_dssp             TEEEEEEESCCGGGCEEEEEEEEETT
T ss_pred             CEEEEEECCCChhHCEEEEEEEecCC
Confidence            34456 99999999999999999954

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=83.77  E-value=0.62  Score=44.40  Aligned_cols=23  Identities=13%  Similarity=0.215  Sum_probs=20.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +++| |.+|+.+|+|.|+|.+.+.
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~   94 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQ   94 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEEC
T ss_pred             eEEEEECCcccccCEEEEEEEEeC
Confidence            4566 9999999999999999985

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=83.70  E-value=0.47  Score=48.73  Aligned_cols=28  Identities=18%  Similarity=0.004  Sum_probs=24.2

Q ss_pred             EE-EEEEEecCC-CcceeEEEEEeeeccce
Q psy8879         472 TV-QVYVQLWTN-YDPNCLLTITLYIDGDV  499 (694)
Q Consensus       472 tL-~~~v~~~d~-G~YtC~~~n~~~~~~~~  499 (694)
                      +| |.+|+..|+ |.|+|.|+|.++.+...
T Consensus       299 ~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~  328 (339)
T 3o4o_C          299 PLIFDPVTREDLHMDFKCVVHNTLSFQTLR  328 (339)
T ss_dssp             CCEECSSCCCSCCCCCEEEEEETTEEECCB
T ss_pred             EEEEEEechhhcCccEEEEEEeccCceEEE
Confidence            45 899999998 99999999998887654

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=84.18  E-value=0.22  Score=42.87  Aligned_cols=22  Identities=9%  Similarity=-0.111  Sum_probs=19.5

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .+| |.+|+.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~v~~~DsG~Y~C~~~~~   93 (110)
T 1u3h_A           71 LSLHIADSQPGDSATYFCAASAN   93 (110)
Confidence            456 9999999999999999874

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=83.65  E-value=0.37  Score=44.87  Aligned_cols=25  Identities=12%  Similarity=0.162  Sum_probs=21.4

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      .+++| |.+|+..|+|.|+|.+.|..
T Consensus        64 ~~~~L~i~~v~~~d~G~Y~C~~~~~~   89 (201)
T 3s97_C           64 TNGNLYIANVEASDKGNYSCFVSSPS   89 (201)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred             CCCeEEECcCCcccCeEEEEEEEecC
Confidence            45666 99999999999999999855

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=83.62  E-value=0.42  Score=40.83  Aligned_cols=22  Identities=5%  Similarity=-0.083  Sum_probs=19.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +.+| |.+++.+|+|.|.|.+.+
T Consensus        65 ~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           65 SASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEECCCCcccCEEEEEEEEe
Confidence            3456 999999999999999998

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=83.60  E-value=0.55  Score=47.39  Aligned_cols=26  Identities=4%  Similarity=-0.091  Sum_probs=21.2

Q ss_pred             cEE-EEEEEe-cCCCcceeEEEEEeeec
Q psy8879         471 GTV-QVYVQL-WTNYDPNCLLTITLYID  496 (694)
Q Consensus       471 gtL-~~~v~~-~d~G~YtC~~~n~~~~~  496 (694)
                      .+| |.+++. .|+|.|+|.++|..+..
T Consensus        63 ~~L~i~~~~~~~D~G~Y~C~a~n~~g~~   90 (304)
T 2yd9_A           63 AVLRIQPLRTPRDENVYECVAQNSVGEI   90 (304)
T ss_dssp             EEEEECSCCTTTTCSEEEEEEECSSCEE
T ss_pred             eEEEEecccccCCCeEEEEEEECCCCeE
Confidence            345 889998 99999999999866553

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=83.52  E-value=0.86  Score=41.86  Aligned_cols=27  Identities=7%  Similarity=-0.149  Sum_probs=20.7

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      ..++| +.++  +|+|.|+|.|+|..+...
T Consensus       146 ~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~  173 (182)
T 1rhf_A          146 SPSVLNVTGV--TQSTMFSCEAHNLKGLAS  173 (182)
T ss_dssp             SSEEEEECCC--SSCEEEEEEEEETTEEEE
T ss_pred             CceEEEEecc--ccCeEEEEEEECCCCCcc
Confidence            34555 6666  699999999999987664

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=83.51  E-value=0.27  Score=46.39  Aligned_cols=30  Identities=13%  Similarity=-0.021  Sum_probs=24.0

Q ss_pred             eeEE-ecccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         464 RANV-TGLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       464 ~~n~-~~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      |..+ .++++| |.+|+.+|+|.|+|.+.+..
T Consensus        61 R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~   92 (180)
T 2dru_A           61 RVDLDKTNGALRIYNVSKEDRGDYYMRMLHET   92 (180)
T ss_dssp             TEEECTTTCCEEECSCCGGGCEEEEEEEESSS
T ss_pred             eEEEeCCCccEEEcCCCHHHCeEEEEEEEcCC
Confidence            4455 567777 99999999999999986643

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=83.46  E-value=0.75  Score=51.33  Aligned_cols=31  Identities=0%  Similarity=-0.348  Sum_probs=25.7

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.++| |.+|+..|+|.|+|.|+|..+.....
T Consensus       376 ~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~  407 (527)
T 3qs9_E          376 NGYSISKFCNHKHQPGEYIFHAENDDAQFTKM  407 (527)
T ss_dssp             SSSEEEEECCCTTCCSCEEEEEEETTEEEEEE
T ss_pred             CCcEEEEecCCcccCEEEEEEEEeCCCcEEEE
Confidence            34566 99999999999999999988876553

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=83.34  E-value=0.29  Score=46.01  Aligned_cols=28  Identities=7%  Similarity=-0.117  Sum_probs=24.0

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ..++| |.+++.+|.|.|+|.|+|..+..
T Consensus       169 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          169 TTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             TTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             CcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            34566 88999999999999999988776

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=83.27  E-value=0.51  Score=51.04  Aligned_cols=24  Identities=0%  Similarity=-0.316  Sum_probs=19.7

Q ss_pred             EEEEEecCCCcceeEEEEEeeecc
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      |.+|+.+|+|.|+|.|+|..+...
T Consensus       107 I~~v~~~D~G~Y~C~a~N~~g~~~  130 (423)
T 3qs7_E          107 ILKMTETQAGEYLLFIQSEATNYT  130 (423)
T ss_dssp             ESSCCSSSCSEEEEEEEC--CEEE
T ss_pred             EeecCcccCEEEEEEEEcCCCcEE
Confidence            889999999999999999876554

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.26  E-value=0.49  Score=42.13  Aligned_cols=23  Identities=4%  Similarity=-0.197  Sum_probs=19.6

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +.+| |.+|+.+|+|+|.|.+.+.
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~~~  101 (136)
T 2d9c_A           78 DFSISISNITPADAGTYYCVKFRK  101 (136)
T ss_dssp             BCCEEESSCCTTTCEEEEEEEEEC
T ss_pred             EEEEEECCCCHHHCEEEEEEEEeC
Confidence            3456 9999999999999999873

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=83.08  E-value=0.77  Score=42.78  Aligned_cols=32  Identities=13%  Similarity=0.085  Sum_probs=24.8

Q ss_pred             EEEEEecCCCcceeEEEEEeeeccceeEEeeccCC
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCS  508 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~~~  508 (694)
                      +.+++..|+|.|+|.|+|.++...   +...++|+
T Consensus       144 i~~~~~~d~G~Y~C~a~N~~g~~~---~~~~l~~~  175 (176)
T 1hng_A          144 MSYQWTNLRAPFKCKAVNRVSQES---EMEVVNCP  175 (176)
T ss_dssp             EEEECSCCSSCEEEEEEETTEEEE---EEECCCCC
T ss_pred             EEEEEccCCeEEEEEEEecCCCce---ecccccCC
Confidence            558889999999999999877554   44556664

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=83.03  E-value=0.5  Score=47.18  Aligned_cols=25  Identities=4%  Similarity=-0.104  Sum_probs=19.0

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      ++| |.+++..|+|.|+|.++|..+.
T Consensus        51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~   76 (289)
T 3mjg_X           51 SVLTLTNLTGLDTGEYFCTHNDSRGL   76 (289)
T ss_dssp             EEEEECSCCGGGCEEEEEECCC----
T ss_pred             EEEEEccCChhhCEEEEEEEcccCCC
Confidence            456 9999999999999999987654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=82.99  E-value=0.85  Score=47.78  Aligned_cols=59  Identities=17%  Similarity=0.007  Sum_probs=36.9

Q ss_pred             eeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         436 SALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       436 ~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      ....+.|..       +.|..........    ..+..+.+.++| |.+++..|+|.|+|.|+|..+....
T Consensus       237 ~~~~l~C~~~~~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  303 (403)
T 3laf_A          237 KDAVLECCVSGYPPPSFTWLRGEEVIQLR----SKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISA  303 (403)
T ss_dssp             SCEEECCEEEEESCCEEEEEETTEECCCS----SSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CcEEEEEEcCCCCCCeEEEEECCeeccCC----CceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEE
Confidence            445556654       5565544333311    122334455667 8999999999999999997655433

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=82.95  E-value=0.65  Score=45.72  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=19.9

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      ++| |.+|+.+|+|.|+|.++|.
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~  106 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLK  106 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEECCCCHhHCEEEEEEEEec
Confidence            566 9999999999999999984

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=82.86  E-value=1.4  Score=49.09  Aligned_cols=28  Identities=7%  Similarity=-0.156  Sum_probs=23.6

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      ++| |.+|+..|+|.|+|.|+|..+..+.
T Consensus       509 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  537 (585)
T 2ocw_A          509 VSLTLNLVTRADEGWYWCGVKQGHFYGET  537 (585)
T ss_pred             EEEEECCCCcccCeEEEEEeEeCCCccEE
Confidence            356 9999999999999999998875443

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=82.81  E-value=0.75  Score=45.63  Aligned_cols=26  Identities=12%  Similarity=-0.065  Sum_probs=21.6

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      .++| |.+++..|+|.|+|.++|..+.
T Consensus        60 ~~~L~i~~v~~~d~G~Y~C~~~n~~g~   86 (284)
T 2rik_A           60 TATLTVLKVTKGDAGQYTCYASNVAGK   86 (284)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEEEEEecCCcccCEEEEEEEEECCce
Confidence            3556 8999999999999999986544

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=82.74  E-value=0.67  Score=40.34  Aligned_cols=22  Identities=14%  Similarity=-0.080  Sum_probs=19.2

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .+| |.+++.+|+|.|.|.+.+.
T Consensus        73 ~~L~I~~~~~~DsG~Y~C~~~~~   95 (120)
T 1oaq_L           73 AALTITGAQTEDEAIYFCALWYS   95 (120)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEET
T ss_pred             EEEEECCCChhhCeEEEEEEccC
Confidence            356 9999999999999999873

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=82.73  E-value=1.4  Score=41.33  Aligned_cols=28  Identities=14%  Similarity=0.056  Sum_probs=21.7

Q ss_pred             EEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         475 VYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       475 ~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      ..++.+|.|.|+|.|+|..+...+.+..
T Consensus       170 ~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          170 LDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             EEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             EEEEecCCCEEEEEEecCcceeeeEEec
Confidence            4566779999999999988776665543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=82.72  E-value=0.51  Score=49.33  Aligned_cols=28  Identities=11%  Similarity=0.009  Sum_probs=23.6

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      .++| |.+++.+|+|.|+|.|+|..+...
T Consensus       269 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  297 (388)
T 2v5m_A          269 SGTLIIKDAVVEDSGKYLCVVNNSVGGES  297 (388)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             cCEEEECcCCHHHCeEEEEEEecCCCcee
Confidence            4566 889999999999999999877643

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=82.70  E-value=0.55  Score=45.07  Aligned_cols=25  Identities=16%  Similarity=-0.069  Sum_probs=21.3

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      ++| |.+++..|+|.|+|.|+|..+.
T Consensus       165 ~~L~i~~v~~~d~G~Y~C~a~n~~g~  190 (218)
T 3k0w_A          165 KLYMVPYVDLEHQGTYWCHVYNDRDS  190 (218)
T ss_dssp             SEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CEEEEeecChhcCEEEEEEEEcCCCC
Confidence            455 8899999999999999996654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=82.57  E-value=0.74  Score=43.25  Aligned_cols=22  Identities=9%  Similarity=-0.291  Sum_probs=17.9

Q ss_pred             EEEEEecCCCcceeEEEEEeee
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      +.+++..|+|.|+|.++|....
T Consensus        76 i~~~~~~d~G~Y~C~~~n~~g~   97 (212)
T 2v9r_A           76 HGRKSRPDEGVYVCVARNYLGE   97 (212)
T ss_dssp             CCSSCCCSCEEEEEEEEETTEE
T ss_pred             ecCCCcccCeEEEEEEECCCCc
Confidence            3467899999999999986554

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=82.33  E-value=0.58  Score=44.46  Aligned_cols=23  Identities=4%  Similarity=-0.214  Sum_probs=19.3

Q ss_pred             EEEEEecCCCcceeEEEEEeeec
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      +.+++..|+|.|+|.++|..+..
T Consensus        73 i~~v~~~d~G~Y~C~~~n~~g~~   95 (217)
T 2vr9_A           73 MQGKKEQDGGEYWCVAKNRVGQA   95 (217)
T ss_dssp             CBSSSCBCCEEEEEEEEETTEEE
T ss_pred             eccCCcccCceEEEEEecCCCcc
Confidence            67789999999999999866543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=82.21  E-value=0.52  Score=44.45  Aligned_cols=23  Identities=4%  Similarity=-0.517  Sum_probs=20.0

Q ss_pred             E-EEEEEecCCCcceeEEEEEeee
Q psy8879         473 V-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       473 L-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      | |.+++..|+|.|+|.++|....
T Consensus        61 L~i~~v~~~D~G~Y~C~~~n~~~~   84 (212)
T 2r15_A           61 LQINEPTPNDKGKYVMELFDGKTG   84 (212)
T ss_dssp             EEEESCCGGGCEEEEEEEECSSCE
T ss_pred             EEECCCCcccCEEEEEEEecCCcc
Confidence            5 9999999999999999985443

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=82.13  E-value=0.53  Score=46.59  Aligned_cols=37  Identities=5%  Similarity=-0.126  Sum_probs=28.0

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE----eeeccceeEEeeccC
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT----LYIDGDVIVQKNTNC  507 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~----~~~~~~~~~~~~~~~  507 (694)
                      ++| |.+|+.+|+|.|+|.|+|.    .|-.|..+......+
T Consensus       210 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~~~~  251 (256)
T 3tf7_C          210 FFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTVLELEH  251 (256)
T ss_dssp             CEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEEEEECGGG
T ss_pred             EEEEECCCCHHHCEEEEEEecCCCCccEECCCeEEEEEcccc
Confidence            456 8999999999999999985    466666655554433

>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=81.86  E-value=0.5  Score=38.77  Aligned_cols=28  Identities=11%  Similarity=-0.270  Sum_probs=15.7

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +++| +.++...+.|.|.|.+++...+..
T Consensus        34 ~~tL~L~~~~~d~sG~Y~C~~~~~~~~~~   62 (79)
T 1xiw_B           34 ITRLDLGKRILDPRGIYRCNGTDIYKDKE   62 (79)
T ss_dssp             GTEEEEEEGGGCCEEEEEEC--------C
T ss_pred             CCeEEeccCcCCCCeEEEecCCCCCCccc
Confidence            4666 667778889999999988877544

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=81.74  E-value=0.54  Score=41.49  Aligned_cols=23  Identities=4%  Similarity=-0.197  Sum_probs=19.9

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +.+| |.+|+.+|+|.|.|.+.+.
T Consensus        73 ~~~L~I~~v~~~DsG~Y~C~~~~~   96 (127)
T 2jju_A           73 DFSISISNITPADAGTYYCVKFRK   96 (127)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEEEEECCCCHHHCEEEEEEEEcC
Confidence            4456 9999999999999999874

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=81.61  E-value=0.59  Score=44.29  Aligned_cols=23  Identities=9%  Similarity=-0.071  Sum_probs=19.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      ++.| |.+|+.+|+|.|+|.++|.
T Consensus        62 ~~~l~I~~v~~~D~G~Y~C~a~~~   85 (201)
T 1nkr_A           62 KANFSISRMTQDLAGTYRCYGSVT   85 (201)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             eEEEEeccCCcccCeEEEEeEecC
Confidence            3555 8899999999999999864

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=81.46  E-value=1.2  Score=44.07  Aligned_cols=25  Identities=8%  Similarity=-0.174  Sum_probs=21.1

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      .++.| |.+|+..|+|.|+|.++|..
T Consensus       150 ~~~~l~I~~v~~~d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          150 VQAEFPLGPVTTAHRGTYRCFGSYNN  175 (242)
T ss_dssp             SEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred             ceEEEEeCCCccccCEEEEEEEECCC
Confidence            34555 99999999999999999864

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=81.43  E-value=0.22  Score=42.84  Aligned_cols=23  Identities=9%  Similarity=-0.216  Sum_probs=19.8

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEe
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      .+| |.+|+.+|+|.|.|.+.+..
T Consensus        73 ~sL~I~~v~~~DsG~Y~C~v~~~~   96 (116)
T 2or8_A           73 VSLTIENSVESDSGLYCCRVEIPG   96 (116)
T ss_dssp             CCEEESSCCGGGCEEEEEEECCSS
T ss_pred             EEEEECCCCcccCEEEEEEEEcCC
Confidence            455 99999999999999998753

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=81.42  E-value=0.51  Score=48.21  Aligned_cols=28  Identities=7%  Similarity=-0.131  Sum_probs=22.9

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      .++| |.+++..|+|.|+|.++|..+...
T Consensus       179 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  207 (334)
T 1ry7_B          179 QWSLVMESVVPSDRGNYTCVVENKFGSIR  207 (334)
T ss_dssp             TTEEEECSCCGGGCCCEEEEEEETTEEEE
T ss_pred             eEEEEECCCCcccCEEEEEEEEeCCCCEE
Confidence            4456 889999999999999999765543

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=81.25  E-value=0.27  Score=42.12  Aligned_cols=22  Identities=14%  Similarity=-0.237  Sum_probs=19.1

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .+| |.+++.+|+|.|.|.+.+.
T Consensus        73 ~~L~I~~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           73 FTFTISSLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEECCCChhhCEEEEEEEeeC
Confidence            456 9999999999999999863

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=81.19  E-value=0.67  Score=43.92  Aligned_cols=22  Identities=14%  Similarity=-0.159  Sum_probs=19.8

Q ss_pred             EE-EEEEEecCCCcceeEEEEEe
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      +| |.+|+.+|+|.|+|.+.|..
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~~~~   94 (213)
T 3d9a_L           72 TLSINSVETEDFGMYFCQQSNSW   94 (213)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEECCCChhhCEEEEEeeecCC
Confidence            66 99999999999999999864

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=81.14  E-value=0.56  Score=47.95  Aligned_cols=30  Identities=10%  Similarity=0.008  Sum_probs=25.0

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +| |.+++..|+|.|+|.|+|..+.....+.
T Consensus       292 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  322 (334)
T 1ry7_B          292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW  322 (334)
T ss_dssp             CEEECSCCTTSCSEEEEEEEESSCCEEEEEE
T ss_pred             EEEEccCCHHHCEEEEEEEeCCCCeEEEEEE
Confidence            56 8899999999999999999887655443

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=81.09  E-value=1.5  Score=41.76  Aligned_cols=21  Identities=5%  Similarity=-0.246  Sum_probs=19.5

Q ss_pred             EE-EEEEEecCCCcceeEEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +| |.+|+.+|+|.|+|.+.|.
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~  103 (220)
T 1pz5_B           82 YLQMNNLRAEDTGIYYCTRGGA  103 (220)
T ss_dssp             EEEECSCCGGGCEEEEEEEECT
T ss_pred             EEEEccCCHHHCEEEEEEEecC
Confidence            66 9999999999999999986

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=81.05  E-value=1.1  Score=44.33  Aligned_cols=22  Identities=9%  Similarity=-0.055  Sum_probs=19.8

Q ss_pred             ccEE-EEEEEecCCCcceeEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +++| |.+|+.+|+|.|+|.+.+
T Consensus        99 ~~sL~I~~v~~~D~G~Y~C~~~~  121 (268)
T 3pl6_D           99 VSTLKIQRTERGDSAVYLCATSA  121 (268)
T ss_dssp             SEEEEECSCCGGGCEEEEEEEES
T ss_pred             EEEEEECCCCcccCEEEEEEEec
Confidence            4567 999999999999999987

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=81.04  E-value=0.62  Score=44.42  Aligned_cols=29  Identities=10%  Similarity=-0.138  Sum_probs=22.7

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +| |..+...|+|.|+|.|+|.........
T Consensus       180 ~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  209 (216)
T 2xzc_L          180 TLTLSKADYEKHKVYACEVTHQGLSSPVTK  209 (216)
T ss_dssp             EEEEEHHHHTTCCEEEEEEECTTCSSCEEE
T ss_pred             EEEECHHHhCCCCcEEEEEEcCCCCCceEE
Confidence            44 778888999999999999876654333

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=80.93  E-value=0.29  Score=43.96  Aligned_cols=22  Identities=18%  Similarity=-0.065  Sum_probs=19.6

Q ss_pred             EE-EEEEEecCCCcceeEEEEEe
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      +| |.+++.+|+|.|+|.+.|..
T Consensus        78 ~L~I~~~~~~DsG~Y~C~a~n~~  100 (133)
T 3khq_A           78 TLTIQNIQYEDNGIYFCKQKCDS  100 (133)
T ss_dssp             EEEECSCCGGGCEEEEEEESSCC
T ss_pred             EEEECCCChHHCEEEEEEEEeCC
Confidence            45 99999999999999999864

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=80.82  E-value=0.58  Score=45.46  Aligned_cols=24  Identities=13%  Similarity=-0.166  Sum_probs=20.6

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      ..++| |.+|+.+|+|.|+|.++|.
T Consensus       155 ~~~~L~I~~v~~~D~G~Y~C~a~n~  179 (218)
T 1uct_A          155 HPANFSLGPVDLNVSGIYRCYGWYN  179 (218)
T ss_dssp             SSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             ccCEEEEccCCcccCEEEEEEEEcC
Confidence            34566 9999999999999999985

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=80.76  E-value=0.67  Score=46.68  Aligned_cols=27  Identities=11%  Similarity=-0.189  Sum_probs=22.1

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      .++| |.+++.+|+|.|+|.++|.....
T Consensus        60 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~~   87 (317)
T 2y25_A           60 ICTLLITEFSKKDAGIYEVILKDDRGKD   87 (317)
T ss_dssp             CEEEEETTCCSTTCSCEEEEEESSSCEE
T ss_pred             eEEEEEccCCcccCeEEEEEEECCCCcE
Confidence            3456 88999999999999999865544

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=80.76  E-value=0.39  Score=42.85  Aligned_cols=30  Identities=3%  Similarity=-0.059  Sum_probs=24.3

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.+| |.+++.+|+|.|.|.+.+........
T Consensus        65 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~   95 (126)
T 3moq_A           65 SFSLRISDLRVEDSGTYKCQAFYVFFAEDVG   95 (126)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEEEETTCGG
T ss_pred             EEEEEECcCChHhCEEEEEEEEEcCCCCCce
Confidence            3455 99999999999999999987755443

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=80.74  E-value=0.63  Score=43.67  Aligned_cols=29  Identities=10%  Similarity=0.043  Sum_probs=23.0

Q ss_pred             eEEecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         465 ANVTGLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       465 ~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      ....+ ++| |.+++..|+|.|+|.++|...
T Consensus        60 ~~~~~-~~L~i~~v~~~D~G~Y~C~~~~~~g   89 (212)
T 1f97_A           60 VTFSS-SGITFSSVTRKDNGEYTCMVSEEGG   89 (212)
T ss_dssp             EEEET-TEEEESCCCGGGCEEEEEEEEETTS
T ss_pred             EEeec-eeEEEcccCcccCeEEEEEEEccCC
Confidence            34444 666 899999999999999999643

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=80.72  E-value=2.6  Score=43.77  Aligned_cols=29  Identities=10%  Similarity=-0.240  Sum_probs=23.7

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ++| |.+++..|+|.|+|.|+|..+.....
T Consensus       158 ~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  187 (389)
T 2jll_A          158 MILEIAPTSDNDFGRYNCTATNHIGTRFQE  187 (389)
T ss_dssp             EEEEECCCSTTSSEEEEEEEEETTEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEEcCCCcEEEE
Confidence            345 88999999999999999987765443

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=80.68  E-value=0.84  Score=42.18  Aligned_cols=31  Identities=10%  Similarity=-0.114  Sum_probs=23.2

Q ss_pred             eEEeccc-EE-EEEEEecCCCcceeEEEEEeee
Q psy8879         465 ANVTGLG-TV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       465 ~n~~~~g-tL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      ..+..++ +| |.+++..|+|.|+|.+.|....
T Consensus        55 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   87 (192)
T 2iep_A           55 YSIRENGQLLTILSVEDSDDGIYCCTANNGVGG   87 (192)
T ss_dssp             EEEEGGGTEEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEEcCCccEEEEcCCCcccCeEEEEEEEcCCCc
Confidence            3344444 45 8999999999999999986543

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=80.59  E-value=0.59  Score=40.33  Aligned_cols=20  Identities=15%  Similarity=0.112  Sum_probs=18.3

Q ss_pred             EE-EEEEEecCCCcceeEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n  491 (694)
                      +| |.+++.+|+|.|.|.+.+
T Consensus        77 ~L~I~~~~~~DsG~Y~C~~~~   97 (116)
T 1tvd_A           77 HLVISPVRTEDSATYYCAFTL   97 (116)
T ss_dssp             EEEESSCCGGGCEEEEEEEEC
T ss_pred             EEEEccCChHHCEEEEEEEeC
Confidence            55 999999999999999987

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=80.46  E-value=1.1  Score=42.38  Aligned_cols=26  Identities=15%  Similarity=-0.046  Sum_probs=21.8

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      ++++| |.+|+.+|+|.|+|.+.|...
T Consensus        68 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~   94 (213)
T 3mj8_L           68 NMATLTISKAQAGDEADYYCQSWDGTN   94 (213)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             CEEEEEECCCChhhCEEEEEEeccCCc
Confidence            34556 999999999999999999653

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=80.32  E-value=0.49  Score=45.84  Aligned_cols=22  Identities=14%  Similarity=-0.158  Sum_probs=19.9

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      ++| |.+|+.+|+|.|+|.|+|.
T Consensus       199 ~~L~I~~v~~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          199 LSLHIADSQPGDSATYFCAAIDT  221 (238)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEET
T ss_pred             EEEEEcCCCHHHCEEEEEEEeeC
Confidence            456 9999999999999999996

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=80.29  E-value=0.77  Score=47.25  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=20.9

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      +++| |.+++.+|+|.|+|.++|..+
T Consensus        78 ~~~L~i~~~~~~D~G~Y~C~a~n~~~  103 (349)
T 4dep_C           78 KDVLWFRPTLLNDTGNYTCMLRNTTY  103 (349)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CCEEEEccCChhhCEEEEEEEecCCc
Confidence            4556 999999999999999988543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=80.28  E-value=0.52  Score=47.32  Aligned_cols=21  Identities=5%  Similarity=-0.151  Sum_probs=19.5

Q ss_pred             EE-EEEEEecCCCcceeEEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +| |.+|+.+|+|.|+|.++|.
T Consensus       214 ~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          214 YLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEEECSCCGGGCEEEEEEEECS
T ss_pred             EEEECCCChhHCEEEEEEEEcC
Confidence            56 9999999999999999996

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=80.22  E-value=0.41  Score=41.91  Aligned_cols=21  Identities=10%  Similarity=-0.133  Sum_probs=18.7

Q ss_pred             cEE-EEEEEecCCCcceeEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTI  491 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n  491 (694)
                      .+| |.+|+.+|+|.|.|.+.|
T Consensus        73 ~~L~I~~v~~~DsG~Y~C~~~~   94 (119)
T 2e27_L           73 YSFSISNLEPEDAATYYCLQYD   94 (119)
T ss_dssp             EEEEECSCCGGGCEEEEEEECG
T ss_pred             EEEEECCCChHHCEEEEEEEcc
Confidence            356 999999999999999986

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=80.21  E-value=0.8  Score=45.52  Aligned_cols=24  Identities=8%  Similarity=-0.197  Sum_probs=20.5

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      +| |.+++..|+|.|+|.++|..+.
T Consensus        61 ~L~i~~~~~~D~G~Y~C~~~n~~g~   85 (291)
T 2wim_A           61 RLTIYNANIEDAGIYRCQATDAKGQ   85 (291)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSSC
T ss_pred             EEEEccCCcccCEEEEEEEecccCc
Confidence            55 9999999999999999986543

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=80.08  E-value=0.77  Score=41.32  Aligned_cols=33  Identities=6%  Similarity=-0.060  Sum_probs=23.6

Q ss_pred             EE-EEEEEecCCCcceeEEEEE---eeeccceeEEee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT---LYIDGDVIVQKN  504 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~---~~~~~~~~~~~~  504 (694)
                      +| |.+++.+|+|.|.|.+.+.   .|..|..+....
T Consensus        77 ~L~I~~~~~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~  113 (137)
T 3bdb_A           77 DLNIIGAREDDGGEYFCGEVEGIIIKFTSGTRLQFEG  113 (137)
T ss_dssp             EEEEESCCSTTCEEEEEEEECSSCEEEEEEEEECCCC
T ss_pred             EEEECCCCHHHCEEEEEEEccCCeEEECCCEEEEEEC
Confidence            56 9999999999999999863   344444444333

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=80.07  E-value=1.3  Score=43.72  Aligned_cols=24  Identities=8%  Similarity=-0.121  Sum_probs=20.4

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEe
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITL  493 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~  493 (694)
                      +++| |.+|+.+|+|.|+|.+.|..
T Consensus        75 ~~sL~I~~v~~~DsG~Y~C~~~~~~   99 (256)
T 3tf7_C           75 SFHLRKASVHRSDSAVYFCAVSAKG   99 (256)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEECTT
T ss_pred             EEEEEECCCCcccCEEEEEEEecCC
Confidence            3456 99999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	694
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 9e-15
 Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 20/286 (6%)

Query: 100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVP 159
           + C+   +  +P        L  L + + ++  I DG F  L + L  L L NN +S + 
Sbjct: 15  VQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKIS 71

Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
             A APL   L+RL LS NQL +L     K L  L   +    K+     + L   + + 
Sbjct: 72  PGAFAPL-VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVV 129

Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPR--LSSLKVLSIAHNQF 277
            L     + +     A QG++ ++ + ++   +      +T+P+    SL  L +  N+ 
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI------TTIPQGLPPSLTELHLDGNKI 183

Query: 278 SSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLS 337
           + V   +L GL+ L  L    N I  +++ S      L  L L +N++V V G  LA   
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHK 242

Query: 338 NLTTLDLSHNFLRALTQDLITP------LKSLQELRLDDNDISMEP 377
            +  + L +N + A+  +   P        S   + L  N +    
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 1e-14
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 5/232 (2%)

Query: 160 TSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR 219
                 L P+   LDL +N++ ++++  FK L +L+ L L  NK+  +S    APLV L 
Sbjct: 23  EKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS 279
            L L  N+L        + L+ +   +     +   +          +  L     + S 
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSG 140

Query: 280 VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNL 339
           +  GA  G+ KL+ +      I  +         +L+ L L  N+I  V  ASL  L+NL
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 340 TTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLEL 391
             L LS N + A+    +     L+EL L++N +   P  +        + L
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 59/319 (18%), Positives = 115/319 (36%), Gaps = 69/319 (21%)

Query: 55  SCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPGKF 114
            CP      C C L   ++C+     L  + + L         +LLD   + +T +    
Sbjct: 3   VCPF----RCQCHL-RVVQCSDLG--LEKVPKDL-----PPDTALLDLQNNKITEIKDGD 50

Query: 115 LEGVT-LHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAP-------- 165
            + +  LH L++ + ++  IS GAF  L   L+ L L  N L  +P              
Sbjct: 51  FKNLKNLHTLILINNKISKISPGAFAPLVK-LERLYLSKNQLKELPEKMPKTLQELRVHE 109

Query: 166 --------------LAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
                             +  L  +  +   +EN +F+G+  L+++ ++   + T+ Q  
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 169

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLG-------------- 257
                +L  L L GN++T    A+L+GL ++  L LS N ++                  
Sbjct: 170 PP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226

Query: 258 --------PSTVPRLSSLKVLSIAHNQFSSVRRGALAG------LDKLTSLSCHHNQIDV 303
                   P  +     ++V+ + +N  S++                 + +S   N +  
Sbjct: 227 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286

Query: 304 LEDH--SFRALSTLSHLDL 320
            E    +FR +   + + L
Sbjct: 287 WEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 26/121 (21%), Positives = 44/121 (36%)

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
              L   +N+I  ++D  F+ L  L  L L +N+I  +S  + A L  L  L LS N L+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSL 410
            L + +   L+ L+    +   +             ++L                 M  L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 411 C 411
            
Sbjct: 153 S 153

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLR 350
           L  + C    ++ +           + LDL +N+I  +      +L NL TL L +N + 
Sbjct: 12  LRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 351 ALTQDLITPLKSLQELRLDDNDISMEPECIY 381
            ++     PL  L+ L L  N +   PE + 
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMP 99

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 2e-14
 Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 17/199 (8%)

Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
           L  ++NQ+  +        ++L+ L L+ N+L  +    LA L  L  L L  N++  S 
Sbjct: 202 LIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI--SN 255

Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLT 292
           +A L GL  +T+L L  N ++     S +  L++L  L +  NQ   +   +   L  LT
Sbjct: 256 LAPLSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDISPIS--NLKNLT 310

Query: 293 SLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL 352
            L+ + N I  +      +L+ L  L  A+N++  VS  SLA+L+N+  L   HN +  L
Sbjct: 311 YLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDL 366

Query: 353 TQDLITPLKSLQELRLDDN 371
           T   +  L  + +L L+D 
Sbjct: 367 TP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.1 bits (178), Expect = 2e-14
 Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 19/196 (9%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           N +  + P      +  NLD L L+ NQL  +   +   L++L  LDL+ N++  L+   
Sbjct: 207 NQISDITPL----GILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA--P 258

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
           L+ L  L  L+L  N+++   ++ L GL ++T+L+L+ N        S +  L +L  L+
Sbjct: 259 LSGLTKLTELKLGANQIS--NISPLAGLTALTNLELNEN---QLEDISPISNLKNLTYLT 313

Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
           +  N  S +    ++ L KL  L   +N++  +   S   L+ ++ L   HN+I  ++  
Sbjct: 314 LYFNNISDI--SPVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLT-- 367

Query: 332 SLAHLSNLTTLDLSHN 347
            LA+L+ +T L L+  
Sbjct: 368 PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 15/188 (7%)

Query: 191 LSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHN 250
           L++L  L  + N++  ++   +     L  L L GN+L    +  L  L ++TDLDL++N
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 251 LLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFR 310
            ++     S    L+ L  L +  NQ S++    LAGL  LT+L  + NQ++  +     
Sbjct: 252 QISNLAPLS---GLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLE--DISPIS 304

Query: 311 ALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDD 370
            L  L++L L  N I  +S   ++ L+ L  L  ++N +  ++   +  L ++  L    
Sbjct: 305 NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGH 360

Query: 371 NDISMEPE 378
           N IS    
Sbjct: 361 NQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 30/164 (18%)

Query: 132 NISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLE------- 184
            + D   +   + L  L L NN +S +   +       L  L L  NQ+  +        
Sbjct: 230 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT---KLTELKLGANQISNISPLAGLTA 286

Query: 185 -------------NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS 231
                         +    L +L +L L +N +  +S   ++ L  L+ L    N+++  
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS-- 342

Query: 232 VVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHN 275
            V++L  L ++  L   HN ++       +  L+ +  L +   
Sbjct: 343 DVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 7e-05
 Identities = 66/383 (17%), Positives = 122/383 (31%), Gaps = 49/383 (12%)

Query: 299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT 358
            + +V +  S   L  ++ L      I ++ G  + +L+NLT ++ S+N L       IT
Sbjct: 30  GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTD-----IT 82

Query: 359 PLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSVVT 418
           PLK+L   +L D  ++            +      +                 T    + 
Sbjct: 83  PLKNLT--KLVDILMNNNQIADITPLANLTNLTGLTLFNNQ-----------ITDIDPLK 129

Query: 419 RYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQ 478
                  L   SN +   + + G + +  L        L  + +L        T    + 
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL--------TTLERLD 181

Query: 479 LWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQLPWSPKYQVCATLGEFPTDKPL 538
           + +N   +  +   L     +I   N           Q+       +   L E   +   
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNN-----------QISDITPLGILTNLDELSLNGNQ 230

Query: 539 LHCITITNPFPSPPALPLAGPSTPTHSSHYTSLINLSNVLSLCLVLLCVLIVILICVLVR 598
           L  I       +   L LA        S+   L  L+ +  L L    +  +  +  L  
Sbjct: 231 LKDIGTLASLTNLTDLDLAN----NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA 286

Query: 599 KICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKLQATTILLSSLKVLSIAHNQFS 658
                   + +   +    +          N+ S    + +    L+ L+ L  A+N+ S
Sbjct: 287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS----LTKLQRLFFANNKVS 342

Query: 659 SVRRGALAGLDKLTSLSCHHNQI 681
            V   +LA L  +  LS  HNQI
Sbjct: 343 DVS--SLANLTNINWLSAGHNQI 363

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 285 LAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL 344
              LD++T+L      I  ++      L+ L+ ++ ++N++  ++   L +L+ L  + +
Sbjct: 40  QTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILM 95

Query: 345 SHNF 348
           ++N 
Sbjct: 96  NNNQ 99

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 59/248 (23%), Positives = 86/248 (34%), Gaps = 31/248 (12%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNK-------- 203
              L  VP      +     R+ L  N++  +   SF+   +L  L L  N         
Sbjct: 20  QQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 204 -----------------LMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
                            L ++       L  L  L L    L        +GL ++  L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 247 LSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED 306
           L  N L   L   T   L +L  L +  N+ SSV   A  GL  L  L  H N++  +  
Sbjct: 136 LQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 307 HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQEL 366
           H+FR L  L  L L  N + A+   +LA L  L  L L+ N               LQ+ 
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKF 253

Query: 367 RLDDNDIS 374
           R   +++ 
Sbjct: 254 RGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 52/196 (26%), Positives = 75/196 (38%)

Query: 192 SSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNL 251
           ++   + L  N++  +          L +L L  N L     AA  GL  +  LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 252 LAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRA 311
               + P+T   L  L  L +       +  G   GL  L  L    N +  L D +FR 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 312 LSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDN 371
           L  L+HL L  NRI +V   +   L +L  L L  N +  +       L  L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 372 DISMEPECIYVGFNTM 387
           ++S  P         +
Sbjct: 212 NLSALPTEALAPLRAL 227

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 57/277 (20%), Positives = 96/277 (34%), Gaps = 24/277 (8%)

Query: 94  DERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNN 153
           +E      C    +  +P           + +    + ++   +F    + L  L L +N
Sbjct: 10  NEPKVTTSCPQQGLQAVPVGIPAASQR--IFLHGNRISHVPAASFRACRN-LTILWLHSN 66

Query: 154 LLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLA 213
           +L+ +  +A   LA         + QL  ++  +F GL  L+ L L    L  L      
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 214 PLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA 273
            L  L+ L LQ N L        + L ++T L L  N ++  +       L SL  L + 
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLH 185

Query: 274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV------- 326
            N+ + V   A   L +L +L    N +  L   +   L  L +L L  N  V       
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245

Query: 327 -------------AVSGASLAHLSNLTTLDLSHNFLR 350
                         V  +    L+      L+ N L+
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 40/196 (20%), Positives = 62/196 (31%), Gaps = 9/196 (4%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
              L+ +P      L  +   L LS N LY     +    + L  L+L   +L  L  D 
Sbjct: 19  KRNLTALPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
             P++    L     +    +   L  L  +             L    +  L  L+ L 
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT----SLPLGALRGLGELQELY 130

Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
           +  N+  ++  G L    KL  LS  +N +  L       L  L  L L  N +  +   
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP-K 189

Query: 332 SLAHLSNLTTLDLSHN 347
                  L    L  N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 24/205 (11%)

Query: 187 SFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLD 246
               ++S   ++     L  L  D         +L L  N L    +A L     +T L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 247 LSHNLLAGPLGPSTVPRLSSLKVLSIAH--------------------NQFSSVRRGALA 286
           L    L       T+P L +L +                         N+ +S+  GAL 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 287 GLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSH 346
           GL +L  L    N++  L          L  L LA+N +  +    L  L NL TL L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 347 NFLRALTQDLITPLKSLQELRLDDN 371
           N L  + +        L    L  N
Sbjct: 182 NSLYTIPKGFF-GSHLLPFAFLHGN 205

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 173 LDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSV 232
           L L+H  L  L +   + L  +  LDLS+N+L       LA L  L VL+   N   +  
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA--LEN 57

Query: 233 VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS---SVRRGALAGLD 289
           V  +  L  + +L L +N L        +     L +L++  N       ++      L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 290 KLTSL 294
            ++S+
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 10/128 (7%)

Query: 219 RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFS 278
           RVL L    LTV  +  L+ L  VT LDLSHN L     P  +  L  L+VL  + N   
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALE 56

Query: 279 SVRRGALAGLDKLTSLSCHHNQIDVLED-HSFRALSTLSHLDLAHNRIVAVSG---ASLA 334
           +V    +A L +L  L   +N++          +   L  L+L  N +    G       
Sbjct: 57  NVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 335 HLSNLTTL 342
            L +++++
Sbjct: 115 MLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 12/128 (9%)

Query: 146 QALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM 205
           + L L +  L+V+    L  L   +  LDLSHN+L      +   L  L  L  S N L 
Sbjct: 1   RVLHLAHKDLTVLC--HLEQL-LLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE 56

Query: 206 TLSQDCLAPLVTLRVLRLQGNRLT-VSVVAALQGLRSVTDLDLSHNLLAGPLG-----PS 259
            +       L  L+ L L  NRL   + +  L     +  L+L  N L    G       
Sbjct: 57  NVDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 260 TVPRLSSL 267
            +P +SS+
Sbjct: 115 MLPSVSSI 122

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 3e-07
 Identities = 45/409 (11%), Positives = 101/409 (24%), Gaps = 19/409 (4%)

Query: 291 LTSLSCHHNQI-DVLEDHSFRALSTLSHLDLAHNRIVAVS----GASLAHLSNLTTLDLS 345
           + SL     ++ D         L     + L    +         ++L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 346 HNFL-----RALTQDLITPLKSLQELRLDDNDI---SMEPECIYVGFNTMDLELIYSGVW 397
            N L       + Q L TP   +Q+L L +  +           +       EL  S   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 398 RHSTLLIPVMLSLCTRSSVVTRYRYCVVLIEGSNILDQSALVLGCSEILALVPTLTSQPL 457
                L  +   L      + + +     +  ++    ++++    +   L  +      
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 458 SYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWVSLKQL 517
           + V  L   +         ++L +    +        I       +        +    +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 518 PWSPKYQVCATLGEFPTDKPLLHCITITNPFPSPPALPLAGPSTPTHSSHYTSLINLSNV 577
                  +  +                                  + + +         +
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 578 LSLCLVLLCVLIVILICVLVRKICRTPRNSTIHHHACFIPVAQQEDDINRNNSDSRYVKL 637
               L   C L  + +             S++     F+   Q  ++   +       + 
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ- 362

Query: 638 QATTILLSSLKVLSIAHNQFSSVRRGALA----GLDKLTSLSCHHNQID 682
                  S L+VL +A    S     +LA        L  L   +N + 
Sbjct: 363 -GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 306 DHSFRALSTLSHLDLAHNRIVAVSGASLA----HLSNLTTLDLSHNFL-----RALTQDL 356
               +  S L  L LA   +   S +SLA       +L  LDLS+N L       L + +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 357 ITPLKSLQELRLDDNDISME 376
             P   L++L L D   S E
Sbjct: 422 RQPGCLLEQLVLYDIYWSEE 441

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 3e-05
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 193 SLNFLDLSYNKLMTLSQDCLAP-LVTLRVLRLQGNRLT----VSVVAALQGLRSVTDLDL 247
            +  LD+   +L       L P L   +V+RL    LT      + +AL+   ++ +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 248 SHNLL----AGPLGPSTVPRLSSLKVLSIAHNQF 277
             N L       +          ++ LS+ +   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 142 SSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQL----YKLENTSFKGLSSLNFL 197
           S  +Q+L +    LS    + L PL      + L    L     K  +++ +   +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 198 DLSYNKLMTLSQDCLAPLVTLRVLRLQGNRL 228
           +L  N+L  +   C+   +     ++Q   L
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 8e-05
 Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 25/113 (22%)

Query: 241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
            +  LD+    L+       +P L   +V+ +     +  R   ++              
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-------------- 48

Query: 301 IDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL-----SNLTTLDLSHNF 348
                  + R    L+ L+L  N +  V    +          +  L L +  
Sbjct: 49  ------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 26/109 (23%)

Query: 265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNR 324
           S L+VL +A    S     +LA                     +  A  +L  LDL++N 
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLA--------------------ATLLANHSLRELDLSNNC 408

Query: 325 IVAVSGASLA-----HLSNLTTLDLSHNFLRALTQDLITPL-KSLQELR 367
           +       L          L  L L   +     +D +  L K    LR
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 9/82 (10%)

Query: 168 PNLDRLDLSHNQL----YKLENTSFKGLSSLNFLDLSYNKL-----MTLSQDCLAPLVTL 218
             L  L L+   +          +     SL  LDLS N L     + L +    P   L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 219 RVLRLQGNRLTVSVVAALQGLR 240
             L L     +  +   LQ L 
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALE 450

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 8e-07
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 296 CHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQD 355
            + N              +L  L++++N+++ +     A    L  L  S N L  + + 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL 322

Query: 356 LITPLKSLQELRLDDNDISMEPECI 380
                ++L++L ++ N +   P+  
Sbjct: 323 ----PQNLKQLHVEYNPLREFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKL 204
           L+ L + NN L  +P      L P L+RL  S N L ++         +L  L + YN L
Sbjct: 286 LEELNVSNNKLIELP-----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPL 336

Query: 205 MTLSQDCLAPLVTLRV 220
                D    +  LR+
Sbjct: 337 REFP-DIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 175 LSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVA 234
              N       +      SL  L++S NKL+ L     A    L  L    N L   V  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLA-EVPE 321

Query: 235 ALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKV 269
             Q L+    L + +N L     P     +  L++
Sbjct: 322 LPQNLKQ---LHVEYNPLREF--PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 264 LSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN 323
             SL+ L++++N+   +     A   +L  L    N +  + +        L  L + +N
Sbjct: 283 PPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYN 334

Query: 324 RIVAVSGASLAHLSNLTTLDLS 345
            +            ++  L ++
Sbjct: 335 PLREFP----DIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 11/83 (13%)

Query: 199 LSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGP 258
              N      +       +L  L +  N+L   + A    L     L  S N L      
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHL------ 316

Query: 259 STVPR-LSSLKVLSIAHNQFSSV 280
           + VP    +LK L + +N     
Sbjct: 317 AEVPELPQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECI 380
             R +AVS            L+L++  L +L +        L+ L    N ++  PE  
Sbjct: 23  EQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELP 77

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 23/208 (11%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
           +N+   V  + L      +  L      +  +E    + L++L  L+L  N++  L+   
Sbjct: 29  SNVTDTVTQADL----DGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLK 82

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVL- 270
               +T   L     +   ++                 ++       +       L  + 
Sbjct: 83  NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT 142

Query: 271 ------------SIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHL 318
                        ++           LA L KLT+L    N+I  +      +L  L  +
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--PLASLPNLIEV 200

Query: 319 DLAHNRIVAVSGASLAHLSNLTTLDLSH 346
            L +N+I  VS   LA+ SNL  + L++
Sbjct: 201 HLKNNQISDVS--PLANTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 31/220 (14%), Positives = 69/220 (31%), Gaps = 7/220 (3%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
            + ++ +P+     L  N   L     +L  ++  +F G   L  +++S N ++ + +  
Sbjct: 17  ESKVTEIPSD----LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 72

Query: 212 LAPLVTLRVLRLQ---GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLK 268
           +   +            N L ++  A          L  +  +   P           L 
Sbjct: 73  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132

Query: 269 VLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAV 328
            +    N  +  R   +    +   L  + N I  + + +F            +N +  +
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192

Query: 329 SGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
                   S    LD+S   + +L    +  LK L+    
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 291 LTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN 347
                  +N ++ L +  F   S    LD++  RI ++    L +L  L      + 
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 15/59 (25%), Positives = 23/59 (38%)

Query: 169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
             +     +N L +L N  F G S    LD+S  ++ +L    L  L  LR       +
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNK 203
                LD+S  +++ L +   + L  L        K
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 254 GPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
             L        S   +L I+  +  S+    L  L KL + S ++ +
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 8e-05
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 258 PSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSH 317
              + +       ++      S     L   +    L+   +    L       +  L  
Sbjct: 13  KLIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATLRII-EENIPELLS 69

Query: 318 LDLAHNRIVAVSG--ASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS 374
           L+L++NR+  +    + +    NL  L+LS N L++  +        L+EL LD N +S
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLEN--TSFKGLSSLNFLDLSYN 202
              L   +++ + +    +    P L  L+LS+N+LY+L++  +  +   +L  L+LS N
Sbjct: 44  DVVLNRRSSMAATLRI--IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 101

Query: 203 KLMTLSQDCLAPLVTLRVLRLQGNRLT 229
           +L +  +      + L  L L GN L+
Sbjct: 102 ELKSERELDKIKGLKLEELWLDGNSLS 128

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 223 LQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQF 277
           L+ NR+  ++   L  L+ +  L++S N L G +       L    V + A+N+ 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
            NL+ LDL +N++Y         L  L+ L++S+N L          L    V     N+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYANNK 302

Query: 228 L 228
            
Sbjct: 303 C 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 294 LSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT 353
                      +         L+ LDL +NRI       L  L  L +L++S N L    
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 354 QDLITPLKSLQELRLDDN 371
                 L+        +N
Sbjct: 285 PQG-GNLQRFDVSAYANN 301

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 19/95 (20%)

Query: 296 CHHNQI------DVLEDHSFRALSTLSHLDLAHNRIVAVSGASLA-----HLSNLTTLDL 344
            +   +       V++  S      L  L L +N I   +  +L       + +L  L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 345 SHNFLRALTQDLITPLKSLQELR-------LDDND 372
           + N       D++  ++ +   R       LDD +
Sbjct: 310 NGNRFSEE-DDVVDEIREVFSTRGRGELDELDDME 343

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 335 HLSNLTTLDLSHNFL-----RALTQDLITPLKSLQELRLDDNDISMEPECI 380
               L TL L +N +     R L   +   +  L  L L+ N  S E + +
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNR 227
                LDL   ++  +EN     L   + +D S N++  L  D    L  L+ L +  NR
Sbjct: 18  VRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR 74

Query: 228 LTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAG 287
           +        Q L  +T+L L++N L        +  L SL  L I  N  ++ +   L  
Sbjct: 75  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134

Query: 288 LDKLTSL 294
           + K+  +
Sbjct: 135 IYKVPQV 141

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 308 SFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELR 367
            +        LDL   +I  +     A L     +D S N +R L  D    L+ L+ L 
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLL 69

Query: 368 LDDNDISMEPECIYVGFNTM 387
           +++N I    E +      +
Sbjct: 70  VNNNRICRIGEGLDQALPDL 89

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 197 LDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVS-VVAALQGLRSVTDLDLSHNLLAGP 255
           LDL+      L  D    L++  V+  +  R  +   +A       V  +DLS++++   
Sbjct: 5   LDLTGK---NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQ 300
                + + S L+ LS+   + S      LA    L  L+     
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 20/222 (9%)

Query: 150 LPNNLLSV-VPTSALAPLA--PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMT 206
           L +  ++V  P   +          + +L    +      +   L+S++ +  + + + +
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS 60

Query: 207 LSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSS 266
           +    +  L  +  L L GN+LT     A          +L +               S 
Sbjct: 61  V--QGIQYLPNVTKLFLNGNKLTDIKPLA----------NLKNLGWLFLDENKVKDLSSL 108

Query: 267 LKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIV 326
             +  +            + GL  L  L   +   + + D +  +  T        +  +
Sbjct: 109 KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 168

Query: 327 AVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRL 368
                 LA L+ L  L LS N +  L    +  LK+L  L L
Sbjct: 169 -SDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 19/194 (9%)

Query: 152 NNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDC 211
            ++   V  + L     ++D++  +++ +  ++    + L ++  L L+ NKL       
Sbjct: 34  KSVTDAVTQNEL----NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT--DIKP 85

Query: 212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLS 271
           LA L  L  L L  N++                L+ +       L               
Sbjct: 86  LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE-------- 137

Query: 272 IAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGA 331
            +    ++               +       + +      L+ L +L L+ N I  +   
Sbjct: 138 -SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-- 194

Query: 332 SLAHLSNLTTLDLS 345
           +LA L NL  L+L 
Sbjct: 195 ALAGLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	694
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.84
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.63
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.4
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	96.79
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	96.78
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.73
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.62
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	96.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.59
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	96.47
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.37
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	96.37
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	96.35
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.29
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	96.23
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.19
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	96.18
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	96.1
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	96.07
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	96.04
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.02
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	95.93
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	95.89
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	95.86
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	95.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.79
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	95.78
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	95.68
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	95.68
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	95.63
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	95.62
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	95.55
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	95.53
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	95.49
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	95.36
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	95.23
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	95.23
d2avga1	110	Cardiac myosin binding protein C, different domain	95.18
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	95.17
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	95.09
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	95.06
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	95.03
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	94.92
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	94.89
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	94.75
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	94.67
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	94.62
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	94.61
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	94.33
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	94.21
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	94.14
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	94.12
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	94.08
d1gxea_	130	Cardiac myosin binding protein C, different domain	93.93
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	93.88
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	93.62
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	93.57
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	93.53
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	93.21
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	93.21
d1pd6a_	94	Cardiac myosin binding protein C, different domain	92.83
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	92.23
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	91.28
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	90.99
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	90.39
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	88.66
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	87.98
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	87.9
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	87.81
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	86.54
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	85.25
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	81.35
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	80.4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=7.8e-28  Score=251.07  Aligned_cols=271  Identities=24%  Similarity=0.347  Sum_probs=229.2

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .+||++++++.+|..+.  +++++|++++|+|+.+++.+|.++. +|++|++++|.+..+++..|.++ ++|++|++++|
T Consensus        14 ~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~-~L~~L~l~~n~~~~i~~~~f~~l-~~L~~L~l~~n   89 (305)
T d1xkua_          14 VVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPL-VKLERLYLSKN   89 (305)
T ss_dssp             EEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSS
T ss_pred             EEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccc-cccccccccccccccchhhhhCC-CccCEecccCC
Confidence            46777778888888764  5789999999999999888888776 49999999999999988889988 89999999999


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCccc--chhhhhhccCcccccccCCCCcCCCCC
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT--VSVVAALQGLRSVTDLDLSHNLLAGPL  256 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~--~~~~~~~~~L~~L~~L~Ls~N~l~~~i  256 (694)
                      +++.++...   ...++.|++.+|.+..+.+..+.....+..++...|...  ...+..+..+++|+++++++|.+.. +
T Consensus        90 ~l~~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l  165 (305)
T d1xkua_          90 QLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I  165 (305)
T ss_dssp             CCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred             ccCcCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-c
Confidence            998887543   357889999999999998888888888889988887654  2345678888999999999998874 4


Q ss_pred             CCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcc
Q psy8879         257 GPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHL  336 (694)
Q Consensus       257 ~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l  336 (694)
                       +..  ..++|+.|++++|......+..|.+++.+++|++++|.++.+++..|.++++|++|+|++|+|+.+ |..|.++
T Consensus       166 -~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l  241 (305)
T d1xkua_         166 -PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADH  241 (305)
T ss_dssp             -CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTC
T ss_pred             -Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccc
Confidence             332  257899999999999999888999999999999999999999999999999999999999999998 4578999


Q ss_pred             cccCeeecCCCCCCCcChhhhC------CCCCCCEEEccCCCCC--CCCcccc
Q psy8879         337 SNLTTLDLSHNFLRALTQDLIT------PLKSLQELRLDDNDIS--MEPECIY  381 (694)
Q Consensus       337 ~~L~~L~Ls~N~L~~l~~~~~~------~l~~L~~L~Ls~N~L~--~l~~~~f  381 (694)
                      ++|+.|+|++|+|+.++...|.      .+.+|+.|+|++|+|+  .+++..|
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f  294 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  294 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHh
Confidence            9999999999999998776553      4688999999999987  3444444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.9e-29  Score=255.76  Aligned_cols=251  Identities=29%  Similarity=0.384  Sum_probs=180.6

Q ss_pred             EEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEec-C
Q psy8879         123 LVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLS-Y  201 (694)
Q Consensus       123 L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls-~  201 (694)
                      +..++.+++.++..    ++.++++|+|++|+|+.+++.+|.++ ++|++|++++|++..++...+.+++.++.+... .
T Consensus        16 v~c~~~~L~~iP~~----ip~~~~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSCCSSCCTT----CCTTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCCCCccCCC----CCCCCCEEECcCCcCCCCCHHHhhcc-ccccccccccccccccccccccccccccccccccc
Confidence            34455555555432    22345555555555555555555555 555555555555555555555555555554432 3


Q ss_pred             CCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccc
Q psy8879         202 NKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVR  281 (694)
Q Consensus       202 N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~  281 (694)
                      |.++.+++.                        .|.++++|++|++++|.+.+ +.+..+...++|+.+++++|++++++
T Consensus        91 ~~~~~l~~~------------------------~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~l~l~~N~l~~i~  145 (284)
T d1ozna_          91 AQLRSVDPA------------------------TFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALP  145 (284)
T ss_dssp             TTCCCCCTT------------------------TTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cccccccch------------------------hhcccccCCEEecCCccccc-ccccccchhcccchhhhccccccccC
Confidence            334444444                        44445555555555555543 33555666778888888888888888


Q ss_pred             cccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCC
Q psy8879         282 RGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLK  361 (694)
Q Consensus       282 ~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~  361 (694)
                      +..|..+++|++|++++|+++.+++.+|.++++|+.+++++|+++++.+..|.++++|+.|++++|++.++++..|..++
T Consensus       146 ~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             hhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccccc
Confidence            88888888999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccccCCccCccccCCcc
Q psy8879         362 SLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTLLIPVMLSLCTRSSV  416 (694)
Q Consensus       362 ~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~~~~~~~~~C~~~~~  416 (694)
                      +|+.|++++|+|.            |||++.|+..|++... ....++.|..|..
T Consensus       226 ~L~~L~l~~N~l~------------C~C~~~~l~~~l~~~~-~~~~~~~C~~p~~  267 (284)
T d1ozna_         226 ALQYLRLNDNPWV------------CDCRARPLWAWLQKFR-GSSSEVPCSLPQR  267 (284)
T ss_dssp             TCCEEECCSSCEE------------CSGGGHHHHHHHHHCC-SEECCCBEEESGG
T ss_pred             ccCEEEecCCCCC------------CCccchHHHHHHHhCc-CCCCceEeCCchH
Confidence            9999999999999            9999999999998432 2345778876544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.4e-27  Score=240.62  Aligned_cols=189  Identities=31%  Similarity=0.367  Sum_probs=143.9

Q ss_pred             ccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeecc
Q psy8879         194 LNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIA  273 (694)
Q Consensus       194 L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls  273 (694)
                      +++|+|++|+|+++++..|.++++|++|+|++|+++...  .+..+++|++|++++|++.+.  +..+..+++|+.|+++
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVS  108 (266)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEECC
T ss_pred             CCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccccccccccc--cccccccccccccccc
Confidence            444444444444444444444444444444444444211  233445555555555555532  4567777888888888


Q ss_pred             CCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcC
Q psy8879         274 HNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALT  353 (694)
Q Consensus       274 ~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~  353 (694)
                      +|.+.++.+..+..+.++++|++++|.++.+++..+..+++|+.|++++|+++++++..|..+++|++|+|++|+|+.++
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp  188 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccC
Confidence            88888888888888889999999999999999888999999999999999999999999999999999999999999998


Q ss_pred             hhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccccccccc
Q psy8879         354 QDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRH  399 (694)
Q Consensus       354 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~  399 (694)
                      +.++ .+++|+.|+|++|+|.            |||++.||..|++
T Consensus       189 ~~~~-~~~~L~~L~L~~Np~~------------CdC~~~~l~~wl~  221 (266)
T d1p9ag_         189 KGFF-GSHLLPFAFLHGNPWL------------CNCEILYFRRWLQ  221 (266)
T ss_dssp             TTTT-TTCCCSEEECCSCCBC------------CSGGGHHHHHHHH
T ss_pred             hhHC-CCCCCCEEEecCCCCC------------CCcchHHHHHHHH
Confidence            7755 6899999999999999            9999999999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-25  Score=230.19  Aligned_cols=245  Identities=23%  Similarity=0.306  Sum_probs=153.8

Q ss_pred             EEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEcc-CC
Q psy8879         100 LDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLS-HN  178 (694)
Q Consensus       100 Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls-~N  178 (694)
                      ++|++.+++.+|..+.  .++++|+|++|+|+.++..+|.++.. |++|++++|.+..++...+..+ ..++.++.. .|
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~-L~~L~ls~n~l~~i~~~~~~~~-~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTT-CCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCT
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccc-cccccccccccccccccccccc-cccccccccccc
Confidence            3455555555655443  34566666666666666666666543 6666666666666666666665 566666554 44


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCC
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGP  258 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p  258 (694)
                      .++.+++..|.++++|++|++++|.+..+.+..+....+|+.+++++|.++++.+..|..+++|+.|++++|++.+ +++
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-cch
Confidence            5666666666666666666666666666666666666666667776666666556666666666677777766664 445


Q ss_pred             CCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccc
Q psy8879         259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSN  338 (694)
Q Consensus       259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~  338 (694)
                      ..|.++++|+.+++++|+++++.+..|.++++|++|++++|.+..+++..|.++++|++|+|++|++...-+ ..+....
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~~l~~~  249 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAW  249 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHH
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc-chHHHHH
Confidence            666667777777777777777666667777777777777777777776667777777777777776654321 1111223


Q ss_pred             cCeeecCCCCCC
Q psy8879         339 LTTLDLSHNFLR  350 (694)
Q Consensus       339 L~~L~Ls~N~L~  350 (694)
                      ++.+....+++.
T Consensus       250 l~~~~~~~~~~~  261 (284)
T d1ozna_         250 LQKFRGSSSEVP  261 (284)
T ss_dssp             HHHCCSEECCCB
T ss_pred             HHhCcCCCCceE
Confidence            444445555555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.2e-25  Score=228.85  Aligned_cols=291  Identities=22%  Similarity=0.365  Sum_probs=245.9

Q ss_pred             CCCCCCCCCCCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCCCCCc-cccCCCCccEEEccCCCCCCC
Q psy8879          55 SCPSIKNDLCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVTVLPG-KFLEGVTLHGLVISSGELKNI  133 (694)
Q Consensus        55 ~Cp~~~~~~C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~~lp~-~~~~~~~L~~L~Ls~n~i~~i  133 (694)
                      .||.    .|.|.. ..++|.+.  .++.+|..+.     ..+++|++++|+|+.+|+ .|..+++|++|++++|.+..+
T Consensus         3 ~~p~----~c~c~~-~~~~C~~~--~L~~lP~~l~-----~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i   70 (305)
T d1xkua_           3 VCPF----RCQCHL-RVVQCSDL--GLEKVPKDLP-----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI   70 (305)
T ss_dssp             CCCT----TCEEET-TEEECTTS--CCCSCCCSCC-----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred             CCCC----CCEecC-CEEEecCC--CCCccCCCCC-----CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc
Confidence            5888    899964 45899764  3666776653     379999999999999986 588899999999999999999


Q ss_pred             CcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCC--CCCccc
Q psy8879         134 SDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLM--TLSQDC  211 (694)
Q Consensus       134 ~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~--~i~~~~  211 (694)
                      ++.+|.++.. |++|++++|+++.+|...+    ..++.|++++|.+..+....+.....+..++...|...  ......
T Consensus        71 ~~~~f~~l~~-L~~L~l~~n~l~~l~~~~~----~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~  145 (305)
T d1xkua_          71 SPGAFAPLVK-LERLYLSKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA  145 (305)
T ss_dssp             CTTTTTTCTT-CCEEECCSSCCSBCCSSCC----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred             chhhhhCCCc-cCEecccCCccCcCccchh----hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccc
Confidence            9988987664 9999999999999987532    67899999999999999888988999999999888644  344567


Q ss_pred             cCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCccc
Q psy8879         212 LAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKL  291 (694)
Q Consensus       212 f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L  291 (694)
                      |..+++|+++++.+|.+... +..  .+++|+.|++++|...+. .+..+..++.++.|++++|.++++++..+.++++|
T Consensus       146 ~~~l~~L~~l~l~~n~l~~l-~~~--~~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNITTI-PQG--LPPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  221 (305)
T ss_dssp             GGGCTTCCEEECCSSCCCSC-CSS--CCTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             cccccccCccccccCCcccc-Ccc--cCCccCEEECCCCcCCCC-ChhHhhccccccccccccccccccccccccccccc
Confidence            88899999999999998753 333  257899999999998864 47788999999999999999999999999999999


Q ss_pred             ceecccCCccccccchhhhcccccccccCCCCccccccccch------hcccccCeeecCCCCCC--CcChhhhCCCCCC
Q psy8879         292 TSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASL------AHLSNLTTLDLSHNFLR--ALTQDLITPLKSL  363 (694)
Q Consensus       292 ~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f------~~l~~L~~L~Ls~N~L~--~l~~~~~~~l~~L  363 (694)
                      ++|+|++|+|+.++. .|..+++|+.|+|++|+|+.+....|      ..+.+|+.|+|++|.++  .+++..|.-+...
T Consensus       222 ~~L~L~~N~L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~  300 (305)
T d1xkua_         222 RELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  300 (305)
T ss_dssp             CEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             eeeeccccccccccc-ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccC
Confidence            999999999999965 78999999999999999999876655      35688999999999986  5778877766555


Q ss_pred             CEEE
Q psy8879         364 QELR  367 (694)
Q Consensus       364 ~~L~  367 (694)
                      ..++
T Consensus       301 ~~~~  304 (305)
T d1xkua_         301 AAVQ  304 (305)
T ss_dssp             GGEE
T ss_pred             cccc
Confidence            4443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=2.3e-25  Score=233.22  Aligned_cols=264  Identities=20%  Similarity=0.211  Sum_probs=136.0

Q ss_pred             CCCCCCCCcEEEccCCCchhhhhhhcCCCCCCCCeeEEEcCCCCCC---CCCccccCCCCccEEEccC-CCCC-CCCcch
Q psy8879          63 LCACDLPHTLRCTANKSDLYAISESLRGLEPDERVSLLDCTLSNVT---VLPGKFLEGVTLHGLVISS-GELK-NISDGA  137 (694)
Q Consensus        63 ~C~C~~~~~v~C~~~~~~l~~i~~~L~~l~~~~~L~~Ldls~n~l~---~lp~~~~~~~~L~~L~Ls~-n~i~-~i~~~~  137 (694)
                      .|.|.|. .|.|+....              ..+++.||++++++.   .+|+.+.++++|++|++++ |.+. .++ ..
T Consensus        33 ~C~~~w~-gv~C~~~~~--------------~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP-~~   96 (313)
T d1ogqa_          33 CCNRTWL-GVLCDTDTQ--------------TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PA   96 (313)
T ss_dssp             TTTTCST-TEEECCSSS--------------CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-GG
T ss_pred             CCCCcCC-CeEEeCCCC--------------cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc-cc
Confidence            5566554 488965321              127888999888886   4677777777777777754 5554 232 23


Q ss_pred             hcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCC
Q psy8879         138 FIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVT  217 (694)
Q Consensus       138 F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~  217 (694)
                      |..+. +|++|+|++|++.++++..+..+ .+|+++++++|.+....+..+.+++.|+.+++++|.+.+..|..+..+.+
T Consensus        97 i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~-~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~  174 (313)
T d1ogqa_          97 IAKLT-QLHYLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK  174 (313)
T ss_dssp             GGGCT-TCSEEEEEEECCEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred             ccccc-ccchhhhccccccccccccccch-hhhcccccccccccccCchhhccCcccceeeccccccccccccccccccc
Confidence            33332 35555555555555554445544 55555555555554444445555555555555555555444444444443


Q ss_pred             C-cEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecc
Q psy8879         218 L-RVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSC  296 (694)
Q Consensus       218 L-~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~L  296 (694)
                      + +.+++++|++++..+..+..+..+                          .++++++...+..+..+..+++++.+++
T Consensus       175 l~~~l~~~~n~l~~~~~~~~~~l~~~--------------------------~l~l~~~~~~~~~~~~~~~~~~l~~l~~  228 (313)
T d1ogqa_         175 LFTSMTISRNRLTGKIPPTFANLNLA--------------------------FVDLSRNMLEGDASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCCCS--------------------------EEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred             cccccccccccccccccccccccccc--------------------------cccccccccccccccccccccccccccc
Confidence            3 445555555554444444443222                          3444444444444444444445555555


Q ss_pred             cCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCC
Q psy8879         297 HHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDND  372 (694)
Q Consensus       297 s~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~  372 (694)
                      ++|.+...++ .+..+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|. +..+++|+.+++++|+
T Consensus       229 ~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         229 AKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             cccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            5554443332 244445555555555555544444555555555555555555532222 3344555555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=7.4e-24  Score=225.99  Aligned_cols=261  Identities=27%  Similarity=0.367  Sum_probs=174.6

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      .++.|++++++|+.+. .+..+++|++|++++|+|+.+++  |.++. +|++|++++|.+.++++  +..+ ++|+.|++
T Consensus        45 ~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~-~L~~L~L~~n~i~~i~~--l~~l-~~L~~L~~  117 (384)
T d2omza2          45 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLT-KLVDILMNNNQIADITP--LANL-TNLTGLTL  117 (384)
T ss_dssp             TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCCGG--GTTC-TTCCEEEC
T ss_pred             CCCEEECCCCCCCCcc-ccccCCCCCEEeCcCCcCCCCcc--ccCCc-ccccccccccccccccc--cccc-cccccccc
Confidence            4556666666665552 34555666666666666665542  33332 36666666666665543  4555 56666666


Q ss_pred             cCCCCCCCCc---------------------------------------------------------------ccccCCC
Q psy8879         176 SHNQLYKLEN---------------------------------------------------------------TSFKGLS  192 (694)
Q Consensus       176 s~N~L~~i~~---------------------------------------------------------------~~f~~L~  192 (694)
                      ++|.++.+..                                                               ..+..++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            6555442110                                                               1234567


Q ss_pred             CccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeec
Q psy8879         193 SLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSI  272 (694)
Q Consensus       193 ~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~L  272 (694)
                      +++.+++++|.++++.+  +...++|++|++++|+++..  ..+..+++|+.|++++|.+.+.   ..+..+++|+.|++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l  270 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL---APLSGLTKLTELKL  270 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC---GGGTTCTTCSEEEC
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCC---CcccccccCCEeec
Confidence            78888888888887765  35567888888888887742  3567778888888888888763   23667788888888


Q ss_pred             cCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCc
Q psy8879         273 AHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRAL  352 (694)
Q Consensus       273 s~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l  352 (694)
                      ++|.++++++  +.+++.++.+.+..|.++.+.  .+..+++++.|++++|+++++.+  +..+++|+.|++++|+++++
T Consensus       271 ~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         271 GANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             cCcccCCCCc--ccccccccccccccccccccc--ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC
Confidence            8888877653  567777777777777777654  36667777778888887777643  66777788888888877776


Q ss_pred             ChhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         353 TQDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       353 ~~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                      +  .+..+++|+.|++++|+++++++
T Consensus       345 ~--~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         345 S--SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             G--GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             h--hHcCCCCCCEEECCCCcCCCChh
Confidence            5  36677778888888777776653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.6e-23  Score=223.46  Aligned_cols=262  Identities=28%  Similarity=0.414  Sum_probs=222.6

Q ss_pred             cCCCCCCCCeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCc-------
Q psy8879          88 LRGLEPDERVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPT-------  160 (694)
Q Consensus        88 L~~l~~~~~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~-------  160 (694)
                      ++++...++|+.||+++|+|+.+++ +.++++|++|++++|.+..+.+  +.++ ++|+.|+++++.++.++.       
T Consensus        59 l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~--l~~l-~~L~~L~~~~~~~~~~~~~~~~~~~  134 (384)
T d2omza2          59 IDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDPLKNLTNL  134 (384)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred             ccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc--cccc-ccccccccccccccccccccccccc
Confidence            3444455689999999999999975 8899999999999999998764  4444 569999999887764322       


Q ss_pred             --------------------------------------------------------cccccCCCCccEEEccCCCCCCCC
Q psy8879         161 --------------------------------------------------------SALAPLAPNLDRLDLSHNQLYKLE  184 (694)
Q Consensus       161 --------------------------------------------------------~~~~~l~~~L~~L~Ls~N~L~~i~  184 (694)
                                                                              ..+..+ ++++.+++++|.++.+.
T Consensus       135 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~l~l~~n~i~~~~  213 (384)
T d2omza2         135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-TNLESLIATNNQISDIT  213 (384)
T ss_dssp             SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCG
T ss_pred             cccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc-cccceeeccCCccCCCC
Confidence                                                                    123444 77999999999999887


Q ss_pred             cccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCc
Q psy8879         185 NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL  264 (694)
Q Consensus       185 ~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l  264 (694)
                      +  +...++|++|++++|+++.++  .+..+++|+.|++++|++++..  .+..+++|++|+++++.+.+.   ..+..+
T Consensus       214 ~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~---~~~~~~  284 (384)
T d2omza2         214 P--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI---SPLAGL  284 (384)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC---GGGTTC
T ss_pred             c--ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCC---Cccccc
Confidence            5  566789999999999999874  4788999999999999998654  378889999999999999863   247788


Q ss_pred             cccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeec
Q psy8879         265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDL  344 (694)
Q Consensus       265 ~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~L  344 (694)
                      +.++.+++..|.++++.  .+..++++++|++++|+++.+++  +..+++|++|++++|+|++++  .+.++++|++|++
T Consensus       285 ~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l  358 (384)
T d2omza2         285 TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSA  358 (384)
T ss_dssp             TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEEC
T ss_pred             ccccccccccccccccc--ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEEC
Confidence            99999999999999864  47888999999999999998864  889999999999999999875  5889999999999


Q ss_pred             CCCCCCCcChhhhCCCCCCCEEEccCC
Q psy8879         345 SHNFLRALTQDLITPLKSLQELRLDDN  371 (694)
Q Consensus       345 s~N~L~~l~~~~~~~l~~L~~L~Ls~N  371 (694)
                      ++|+++++++  +.++++|+.|+|++|
T Consensus       359 ~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         359 GHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999999876  888999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=1.3e-24  Score=227.35  Aligned_cols=230  Identities=22%  Similarity=0.304  Sum_probs=198.9

Q ss_pred             CccEEEccCCCCCC---CCccccccCCCCccEEEccC-CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCc
Q psy8879         144 PLQALGLPNNLLSV---VPTSALAPLAPNLDRLDLSH-NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLR  219 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~---lp~~~~~~l~~~L~~L~Ls~-N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~  219 (694)
                      +++.|+|++|.+.+   +|+ .+.++ ++|++|+|++ |++++..|..|+++++|++|+|++|++.++.+..+..+.+|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~-~l~~L-~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPS-SLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCG-GGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCCh-HHhcC-ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            48888888888875   444 68888 9999999986 788865567899999999999999999999888899999999


Q ss_pred             EEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCcccc-ceeeccCCcccccccccccCCcccceecccC
Q psy8879         220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSL-KVLSIAHNQFSSVRRGALAGLDKLTSLSCHH  298 (694)
Q Consensus       220 ~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L-~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~  298 (694)
                      +++++.|.+.+..|..+.+++.|+.+++++|.+.+.+ |..+..+.++ +.+++++|++++..+..+.++..+ .+++++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i-p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccc-ccccccccccccccccccccccccccccccccccc-cccccc
Confidence            9999999999889999999999999999999998766 6667677665 889999999999888877776544 699999


Q ss_pred             CccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCC-CCC
Q psy8879         299 NQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDIS-MEP  377 (694)
Q Consensus       299 N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~-~l~  377 (694)
                      +......+..+..+++|+.+++++|.+.+..+ .+..+++|+.|+|++|++++..|..+..+++|++|+|++|+|+ .+|
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            99988888888899999999999999988755 5788899999999999999766677899999999999999998 455


Q ss_pred             c
Q psy8879         378 E  378 (694)
Q Consensus       378 ~  378 (694)
                      .
T Consensus       286 ~  286 (313)
T d1ogqa_         286 Q  286 (313)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.6e-22  Score=202.83  Aligned_cols=197  Identities=28%  Similarity=0.336  Sum_probs=126.8

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      .+..+||++++++.+|+.+.  +++++|+|++|.|+.++..+|.++. +|++|+|++|+|+.++.  +..+ ++|++|+|
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~-~L~~L~L~~N~l~~l~~--~~~l-~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQV--DGTL-PVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCT-TCCEEECTTSCCCEEEC--CSCC-TTCCEEEC
T ss_pred             CCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccc-ccccccccccccccccc--cccc-cccccccc
Confidence            45567999999999988764  4677888888888777777776654 37777777777777664  3455 77777777


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                      ++|+++..+ ..+.++++|++|++++|.+..+.+..+..+.++++|++++|.+....+..+..+++|+.+++++|++++ 
T Consensus        85 s~N~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~-  162 (266)
T d1p9ag_          85 SHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-  162 (266)
T ss_dssp             CSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-
T ss_pred             ccccccccc-cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc-
Confidence            777776654 356667777777777777777766666666777777777666665555555555555555555555554 


Q ss_pred             CCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQI  301 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L  301 (694)
                      +++..|..+++|++|+|++|+|+.++++ +..+++|+.|+|++|.+
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~~lp~~-~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCB
T ss_pred             cCccccccccccceeecccCCCcccChh-HCCCCCCCEEEecCCCC
Confidence            3344455555555555555555544432 23344455555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.5e-21  Score=192.31  Aligned_cols=218  Identities=16%  Similarity=0.221  Sum_probs=118.0

Q ss_pred             EEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCC-CCcccccCCCCccEEEec
Q psy8879         122 GLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYK-LENTSFKGLSSLNFLDLS  200 (694)
Q Consensus       122 ~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~-i~~~~f~~L~~L~~L~Ls  200 (694)
                      .++.++.+++.++.+.+    .++++|++++|.|+.++..+|.++ ++|++|++++|.+.. +++..|.+++++++|.+.
T Consensus        12 ~i~c~~~~l~~iP~~l~----~~l~~L~Ls~n~i~~l~~~~f~~l-~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLP----RNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             EEEEESCSCSSCCSCSC----SCCSEEEEESCCCCEECTTTTTTC-TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             EEEEeCCCCCCcCCCCC----CCCCEEECcCCcCCccChhHhhcc-chhhhhhhccccccceeecccccccccccccccc
Confidence            45555555555554322    235555555555555555555555 555555555555443 334445555555555543


Q ss_pred             C-CCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccc
Q psy8879         201 Y-NKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS  279 (694)
Q Consensus       201 ~-N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~  279 (694)
                      . |++..+.+..|..+++|++|++++|++.                        .......+..+..+..+...++.+..
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~------------------------~~~~~~~~~~l~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK------------------------HLPDVHKIHSLQKVLLDIQDNINIHT  142 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC------------------------SCCCCTTTCBSSCEEEEEESCTTCCE
T ss_pred             ccccccccccccccccccccccccchhhhc------------------------cccccccccccccccccccccccccc
Confidence            2 4455555555555555555555555443                        21111223334455555555556666


Q ss_pred             cccccccCCc-ccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhC
Q psy8879         280 VRRGALAGLD-KLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLIT  358 (694)
Q Consensus       280 i~~~~~~~L~-~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~  358 (694)
                      ++...|.+++ .++.|++++|+++.++...|.....++.+++++|+++.+++..|.++++|+.|+|++|+++.+++..|.
T Consensus       143 i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         143 IERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             ccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            6555555554 566666666666666665554433334445566666666666666667777777777777766665555


Q ss_pred             CCCCCCEEEc
Q psy8879         359 PLKSLQELRL  368 (694)
Q Consensus       359 ~l~~L~~L~L  368 (694)
                      .+++|+.+++
T Consensus       223 ~l~~L~~l~~  232 (242)
T d1xwdc1         223 NLKKLRARST  232 (242)
T ss_dssp             TCCEEESSSE
T ss_pred             CCcccccCcC
Confidence            5555554444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.7e-20  Score=182.46  Aligned_cols=218  Identities=20%  Similarity=0.292  Sum_probs=143.7

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCC-CCccccccCCCCccEEEccC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSV-VPTSALAPLAPNLDRLDLSH  177 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~-lp~~~~~~l~~~L~~L~Ls~  177 (694)
                      .++|++.+++.+|+.+.  .++++|++++|.|+.++..+|.++.. |++|++++|.+.. +++..|.++ ++++++.+..
T Consensus        12 ~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~-L~~L~ls~n~~~~~i~~~~f~~l-~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTT-CCEEEEESCTTCCEECSSSEESC-TTCCEEEEEC
T ss_pred             EEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccch-hhhhhhccccccceeeccccccc-cccccccccc
Confidence            46666677888887664  47899999999999999888988754 9999999998765 677788888 8999998764


Q ss_pred             -CCCCCCCcccccCCCCccEEEecCCCCCCCCcc-ccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCC
Q psy8879         178 -NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQD-CLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGP  255 (694)
Q Consensus       178 -N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~  255 (694)
                       |++..+++..|.++++|++|++++|.+...++. .+..+..+..+...++.+....+..|.+++               
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~---------------  152 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS---------------  152 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc---------------
Confidence             688888888899999999999999998876542 233345555555555555543333333322               


Q ss_pred             CCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhc
Q psy8879         256 LGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAH  335 (694)
Q Consensus       256 i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~  335 (694)
                               ..++.|++++|+++.++...|....-++.+++++|+++.++...|.++++|++|+|++|+|+.+++..|.+
T Consensus       153 ---------~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  223 (242)
T d1xwdc1         153 ---------FESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  223 (242)
T ss_dssp             ---------SSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred             ---------ccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence                     13444555555555554444333222233344555555555555555666666666666666555555555


Q ss_pred             ccccCeeec
Q psy8879         336 LSNLTTLDL  344 (694)
Q Consensus       336 l~~L~~L~L  344 (694)
                      +++|+.+++
T Consensus       224 l~~L~~l~~  232 (242)
T d1xwdc1         224 LKKLRARST  232 (242)
T ss_dssp             CCEEESSSE
T ss_pred             CcccccCcC
Confidence            555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=7.6e-18  Score=176.04  Aligned_cols=251  Identities=25%  Similarity=0.319  Sum_probs=143.5

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      +++.||+++++++.+|+.   .++|++|++++|+|+.++..     ..+|+.|++++|.++.++.     +++.|++|++
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~l~~n~l~~l~~-----lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSD-----LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCS-----CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc-----hhhhhhhhhhhcccchhhh-----hccccccccc
Confidence            456677777777777653   24677777777777766532     2357777777777766553     2245777777


Q ss_pred             cCCCCCCCCcccccCCCCccEEEecCCCCCCCCc------------------cccCCCCCCcEEeccCCcccchh-----
Q psy8879         176 SHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ------------------DCLAPLVTLRVLRLQGNRLTVSV-----  232 (694)
Q Consensus       176 s~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~------------------~~f~~L~~L~~L~Ls~N~l~~~~-----  232 (694)
                      ++|.++.++.  ++.+++|++|++++|.+...+.                  ..+..++.++.|.+.+|......     
T Consensus       106 ~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~  183 (353)
T d1jl5a_         106 SNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS  183 (353)
T ss_dssp             CSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             cccccccccc--hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccc
Confidence            7777766653  4566777777777666554322                  12444556666666666544211     


Q ss_pred             -------------hhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCC
Q psy8879         233 -------------VAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN  299 (694)
Q Consensus       233 -------------~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N  299 (694)
                                   ...+..++.|+.+++++|.... + +.   ...++..+.+.++.+...+.    ....+...++..+
T Consensus       184 ~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~-~~---~~~~l~~~~~~~~~~~~~~~----~~~~l~~~~~~~~  254 (353)
T d1jl5a_         184 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-L-PD---LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSEN  254 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-C-CS---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccc-c-cc---cccccccccccccccccccc----ccccccccccccc
Confidence                         0112223444444444444332 1 11   12233344444443332211    0112222222222


Q ss_pred             cccccc---c-------------hhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCC
Q psy8879         300 QIDVLE---D-------------HSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSL  363 (694)
Q Consensus       300 ~L~~i~---~-------------~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L  363 (694)
                      .+..+.   .             .....+++|++|+|++|+|+.++.    .+++|+.|+|++|+|+.++.    .+++|
T Consensus       255 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~----~~~~L  326 (353)
T d1jl5a_         255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNL  326 (353)
T ss_dssp             CCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTC
T ss_pred             cccccccccchhcccccccCccccccccCCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCcccc----ccCCC
Confidence            221111   0             111235789999999999998753    35789999999999998874    25689


Q ss_pred             CEEEccCCCCCCCCc
Q psy8879         364 QELRLDDNDISMEPE  378 (694)
Q Consensus       364 ~~L~Ls~N~L~~l~~  378 (694)
                      +.|++++|+|+.+|.
T Consensus       327 ~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         327 KQLHVEYNPLREFPD  341 (353)
T ss_dssp             CEEECCSSCCSSCCC
T ss_pred             CEEECcCCcCCCCCc
Confidence            999999999998875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=3.4e-19  Score=173.02  Aligned_cols=172  Identities=23%  Similarity=0.353  Sum_probs=132.9

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCC-CCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKN-ISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSH  177 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~-i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~  177 (694)
                      .++|++++++.+|..+.  .++++|+|++|.|+. +....|.++.. |+.|+|++|.+..+++..|..+ ++|++|+|++
T Consensus        12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~-L~~L~L~~N~i~~~~~~~~~~~-~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGA-SHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTT-CCEEECCSSCCCCBCTTTTTTC-TTCCEEECCS
T ss_pred             EEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCce-Eeeeeccccccccccccccccc-cccceeeecc
Confidence            46788888889988764  578999999999975 66777777664 9999999999999998889888 8999999999


Q ss_pred             CCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCC
Q psy8879         178 NQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLG  257 (694)
Q Consensus       178 N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~  257 (694)
                      |+|+.+++..|.++++|++|+|++|+|+.+++++|..+++|++|+|++|.+.......+. ...++.+.+..+.+.... 
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~~~~~~c~~-  165 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGA-  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCS-
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH-hhhhhhhcccCCCeEeCC-
Confidence            999999999999999999999999999999999999999999999999988754322211 124556666666655322 


Q ss_pred             CCCCCCccccceeeccCCcccc
Q psy8879         258 PSTVPRLSSLKVLSIAHNQFSS  279 (694)
Q Consensus       258 p~~~~~l~~L~~L~Ls~N~L~~  279 (694)
                      |.   .+..++.++|+.|.+.-
T Consensus       166 p~---~l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         166 PS---KVRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             ST---TTTTSBGGGSCTTTCCC
T ss_pred             Ch---hhcCCEeeecCHhhCcC
Confidence            32   23345555666666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=9.9e-19  Score=173.92  Aligned_cols=183  Identities=29%  Similarity=0.394  Sum_probs=105.7

Q ss_pred             ccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEecc
Q psy8879         145 LQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQ  224 (694)
Q Consensus       145 L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls  224 (694)
                      |+.|++.+|.+++++.  +.++ ++|++|++++|.++.+.+  +.++++|+++++++|.++.+.  .+..+++|+.+.++
T Consensus        43 L~~L~l~~~~i~~l~~--l~~l-~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          43 ITTLSAFGTGVTTIEG--VQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (227)
T ss_dssp             CCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             cCEEECCCCCCCcchh--HhcC-CCCcEeecCCceeecccc--ccccccccccccccccccccc--cccccccccccccc
Confidence            5555555555555532  4444 555555555555554432  455555555555555554432  24444455555554


Q ss_pred             CCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccc
Q psy8879         225 GNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVL  304 (694)
Q Consensus       225 ~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i  304 (694)
                      ++                        ...+   ...+...+.++.+.++.+.+....  .+.++++|++|++++|.+...
T Consensus       116 ~~------------------------~~~~---~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2         116 ST------------------------QITD---VTPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             TS------------------------CCCC---CGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred             cc------------------------cccc---cchhccccchhhhhchhhhhchhh--hhccccccccccccccccccc
Confidence            44                        4432   122334455556666666555443  245566667777776666554


Q ss_pred             cchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEcc
Q psy8879         305 EDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLD  369 (694)
Q Consensus       305 ~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls  369 (694)
                      .+  +.++++|+.|+|++|+++++++  +.++++|+.|+|++|+++++++  ++.+++|+.|+++
T Consensus       167 ~~--l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             hh--hcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            43  6667777777777777776643  6677777777777777777764  6677777777775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=6.2e-19  Score=171.19  Aligned_cols=157  Identities=24%  Similarity=0.351  Sum_probs=135.5

Q ss_pred             ccccCCCCcCCCCCCCCCCCCccccceeeccCCcccc-cccccccCCcccceecccCCccccccchhhhcccccccccCC
Q psy8879         243 TDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSS-VRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLA  321 (694)
Q Consensus       243 ~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~-i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls  321 (694)
                      +.++.++++++. + |..+.  +++++|+|++|+|++ +....|.++++|++|+|++|.+..+++..|..+++|++|+|+
T Consensus        11 ~~v~Cs~~~L~~-i-P~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLKE-I-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSS-C-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcCc-c-CCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            467777888774 5 44443  578999999999975 567788999999999999999999999999999999999999


Q ss_pred             CCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCccccccccccccc
Q psy8879         322 HNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHST  401 (694)
Q Consensus       322 ~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~  401 (694)
                      +|+|+.+++.+|.++++|++|+|++|+|+++++++|..+++|++|+|++|++.            |+|++.|+..|++..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~------------~~~~~~~~~~~l~~~  154 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN------------CNCHLAWFAEWLRKK  154 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC------------CSGGGHHHHHHHHHH
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc------------cccchHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999            999999999998733


Q ss_pred             ccCCccCccccCCcc
Q psy8879         402 LLIPVMLSLCTRSSV  416 (694)
Q Consensus       402 ~~~~~~~~~C~~~~~  416 (694)
                       ......++|..+..
T Consensus       155 -~l~~~~~~c~~p~~  168 (192)
T d1w8aa_         155 -SLNGGAARCGAPSK  168 (192)
T ss_dssp             -CCSGGGCBBCSSTT
T ss_pred             -cccCCCeEeCCChh
Confidence             23344677876543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6.9e-18  Score=167.69  Aligned_cols=202  Identities=26%  Similarity=0.311  Sum_probs=138.4

Q ss_pred             EEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879          99 LLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus        99 ~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      .++++.++++.+. ....+.+|++|++.+|.|+.+..  +.. +++|++|++++|.++.+.+  +..+ ++|+++++++|
T Consensus        23 ~~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l~~--l~~-l~~L~~L~ls~n~i~~~~~--l~~l-~~l~~l~~~~n   95 (227)
T d1h6ua2          23 KIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIEG--VQY-LNNLIGLELKDNQITDLAP--LKNL-TKITELELSGN   95 (227)
T ss_dssp             HHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCTT--GGG-CTTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSC
T ss_pred             HHHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcchh--Hhc-CCCCcEeecCCceeecccc--cccc-ccccccccccc
Confidence            3556666665542 33456789999999999998843  554 4569999999999999876  7888 99999999999


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCC
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGP  258 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p  258 (694)
                      .++.+.  .+.++++|+.++++++...++.+  +...+.++.+.++++.+...  ..+.+.++|+.|++++|.+.+   .
T Consensus        96 ~~~~i~--~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~---~  166 (227)
T d1h6ua2          96 PLKNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD---L  166 (227)
T ss_dssp             CCSCCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC---C
T ss_pred             cccccc--cccccccccccccccccccccch--hccccchhhhhchhhhhchh--hhhcccccccccccccccccc---c
Confidence            998875  58899999999999998877654  56778888888888877643  235555666666666666653   1


Q ss_pred             CCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccC
Q psy8879         259 STVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDL  320 (694)
Q Consensus       259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~L  320 (694)
                      ..+.++++|++|++++|+++++++  +.++++|++|+|++|+++.+++  ++++++|+.|++
T Consensus       167 ~~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~l  224 (227)
T d1h6ua2         167 TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL  224 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred             hhhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEe
Confidence            224555555555555555555432  4444555555555555544432  444444444444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.71  E-value=3.6e-16  Score=163.07  Aligned_cols=241  Identities=26%  Similarity=0.314  Sum_probs=173.9

Q ss_pred             CeeEEEcCCCCCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEc
Q psy8879          96 RVSLLDCTLSNVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDL  175 (694)
Q Consensus        96 ~L~~Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~L  175 (694)
                      .|+.|++++|+|+.+|+.+   .+|+.|++++|.++.++.     +++.|++|++++|.++.+|.  +..+ ++|++|++
T Consensus        59 ~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~-----lp~~L~~L~L~~n~l~~lp~--~~~l-~~L~~L~l  127 (353)
T d1jl5a_          59 HLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLEKLPE--LQNS-SFLKIIDV  127 (353)
T ss_dssp             TCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-----CCTTCCEEECCSSCCSSCCC--CTTC-TTCCEEEC
T ss_pred             CCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhh-----hccccccccccccccccccc--hhhh-ccceeecc
Confidence            7999999999999998754   579999999999988753     45679999999999999986  5677 89999999


Q ss_pred             cCCCCCCCCc------------------ccccCCCCccEEEecCCCCCCCCc------------------cccCCCCCCc
Q psy8879         176 SHNQLYKLEN------------------TSFKGLSSLNFLDLSYNKLMTLSQ------------------DCLAPLVTLR  219 (694)
Q Consensus       176 s~N~L~~i~~------------------~~f~~L~~L~~L~Ls~N~l~~i~~------------------~~f~~L~~L~  219 (694)
                      ++|.+...+.                  ..+..++.++.|++.+|.+..+..                  ..+..++.|+
T Consensus       128 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~  207 (353)
T d1jl5a_         128 DNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT  207 (353)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred             ccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccc
Confidence            9998765432                  234556778889988887654321                  1245578899


Q ss_pred             EEeccCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCc-----------------cccceeeccCCccccccc
Q psy8879         220 VLRLQGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRL-----------------SSLKVLSIAHNQFSSVRR  282 (694)
Q Consensus       220 ~L~Ls~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l-----------------~~L~~L~Ls~N~L~~i~~  282 (694)
                      .+++++|.... .+.   ...++..+.+.++.+...  +.....+                 ......++..+.+..+  
T Consensus       208 ~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--  279 (353)
T d1jl5a_         208 TIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL--PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL--  279 (353)
T ss_dssp             EEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC--CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE--
T ss_pred             ccccccccccc-ccc---cccccccccccccccccc--ccccccccccccccccccccccccchhcccccccCccccc--
Confidence            99999988763 232   234566667777766532  2111111                 1112233333333333  


Q ss_pred             ccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCCCCCCcChhhhCCCCC
Q psy8879         283 GALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQDLITPLKS  362 (694)
Q Consensus       283 ~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~~~~~~l~~  362 (694)
                        ...+++|++|+|++|+|+.++.    .+++|+.|+|++|+|+.++.    .+++|+.|+|++|+++.+|..    ..+
T Consensus       280 --~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~----~~~~L~~L~L~~N~L~~lp~~----~~~  345 (353)
T d1jl5a_         280 --CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDI----PES  345 (353)
T ss_dssp             --CCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCC----CTT
T ss_pred             --cccCCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCcccc----ccCCCCEEECcCCcCCCCCcc----ccc
Confidence              2345789999999999998874    36899999999999998853    246899999999999998752    346


Q ss_pred             CCEEEcc
Q psy8879         363 LQELRLD  369 (694)
Q Consensus       363 L~~L~Ls  369 (694)
                      |+.|.+.
T Consensus       346 L~~L~~~  352 (353)
T d1jl5a_         346 VEDLRMN  352 (353)
T ss_dssp             CCEEECC
T ss_pred             cCeeECc
Confidence            8888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.8e-17  Score=159.31  Aligned_cols=147  Identities=24%  Similarity=0.395  Sum_probs=64.5

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCcccchhhhhhccCcccccccC
Q psy8879         168 PNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLTVSVVAALQGLRSVTDLDL  247 (694)
Q Consensus       168 ~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~~~~~~~~~~L~~L~~L~L  247 (694)
                      ++|++|++++|.++.+.  .+..+++|++|++++|+++++.+  +..+++|++|++++|.+....  .+.++++|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccccc
Confidence            44555555555554443  24444555555555555554433  445555555555555444211  2334444444444


Q ss_pred             CCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCcccc
Q psy8879         248 SHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVA  327 (694)
Q Consensus       248 s~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~  327 (694)
                      ++|....   ...+..+++|+.|++++|++..++  .+..+++|++|++.+|+++.+++  ++++++|+.|++++|++++
T Consensus       114 ~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         114 FNNQITD---IDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CSSCCCC---CGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             ccccccc---ccccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCC
Confidence            4444332   112333444444444444444332  23344444444444444443331  3344444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3.5e-17  Score=160.95  Aligned_cols=57  Identities=25%  Similarity=0.321  Sum_probs=24.2

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCCccc
Q psy8879         169 NLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGNRLT  229 (694)
Q Consensus       169 ~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N~l~  229 (694)
                      +|++|++++|.++.+..  +..+++|++|++++|+++++++  ++.+++|++|++++|+++
T Consensus        47 ~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCccc--cccCcccccccccccccc
Confidence            34444444444444331  3344444444444444444332  334444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=6.5e-17  Score=159.05  Aligned_cols=162  Identities=31%  Similarity=0.422  Sum_probs=101.3

Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL  223 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L  223 (694)
                      +|++|++++|.++.++.  +..+ ++|++|+|++|+|+++++  ++++++|++|++++|++++++  .+..+++|+.|++
T Consensus        47 ~L~~L~l~~~~i~~l~~--l~~l-~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l  119 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSL  119 (210)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEEC
T ss_pred             CccEEECcCCCCCCchh--HhhC-CCCCEEeCCCccccCccc--cccCccccccccccccccccc--ccccccccccccc
Confidence            47777777777777654  5566 777777777777777653  567777777777777777664  2667777777777


Q ss_pred             cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879         224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV  303 (694)
Q Consensus       224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~  303 (694)
                      ++|.+..  ...+..++.++.+++++|.+.+   ...+..+++|+.+++++|+++++++  +.++++|++|+|++|+|+.
T Consensus       120 ~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~---~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         120 EHNGISD--INGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             TTSCCCC--CGGGGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ccccccc--cccccccccccccccccccccc---ccccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCC
Confidence            7776653  2345556666666666666653   2234455566666666666655432  4555555555555555555


Q ss_pred             ccchhhhcccccccccCC
Q psy8879         304 LEDHSFRALSTLSHLDLA  321 (694)
Q Consensus       304 i~~~~f~~l~~L~~L~Ls  321 (694)
                      ++  .|.++++|++|+|+
T Consensus       193 l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         193 LR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             CG--GGTTCTTCSEEEEE
T ss_pred             Ch--hhcCCCCCCEEEcc
Confidence            43  24555555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.3e-16  Score=153.69  Aligned_cols=159  Identities=26%  Similarity=0.380  Sum_probs=101.0

Q ss_pred             CccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEec
Q psy8879         144 PLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRL  223 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~L  223 (694)
                      ++++|++++|.++.++.  +..+ ++|++|++++|+++++++  ++++++|++|++++|.+..+++  +..+++|+.|++
T Consensus        41 ~l~~L~l~~~~i~~l~~--l~~l-~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l  113 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDG--VEYL-NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  113 (199)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             CCCEEECCCCCCCCccc--cccC-CCcCcCccccccccCccc--ccCCcccccccccccccccccc--cccccccccccc
Confidence            36666666666665543  4555 666666666666666553  6666666666666666665543  566666666666


Q ss_pred             cCCcccchhhhhhccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCcccc
Q psy8879         224 QGNRLTVSVVAALQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDV  303 (694)
Q Consensus       224 s~N~l~~~~~~~~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~  303 (694)
                      ++|.+...  ..+..+++|+.|++++|.+..   ...+..+++|++|++.+|++++++  .+.++++|++|++++|+++.
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcc---cccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC
Confidence            66665532  235566667777777776653   224666677777777777777664  26677777777777777776


Q ss_pred             ccchhhhcccccccc
Q psy8879         304 LEDHSFRALSTLSHL  318 (694)
Q Consensus       304 i~~~~f~~l~~L~~L  318 (694)
                      ++  .++.+++|+.|
T Consensus       187 i~--~l~~L~~L~~L  199 (199)
T d2omxa2         187 IS--VLAKLTNLESL  199 (199)
T ss_dssp             CG--GGGGCTTCSEE
T ss_pred             Cc--cccCCCCCCcC
Confidence            64  35666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.4e-16  Score=146.08  Aligned_cols=138  Identities=24%  Similarity=0.316  Sum_probs=117.5

Q ss_pred             cccceeeccCCcccccccccccCCcccceecccCC-ccccccchhhhcccccccccCCCCccccccccchhcccccCeee
Q psy8879         265 SSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHN-QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLD  343 (694)
Q Consensus       265 ~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N-~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~  343 (694)
                      ...+.++++++.+.+++. .+.++++|++|++++| .|+.+++.+|.++++|+.|+|++|+|+.+.+.+|.++++|++|+
T Consensus         8 ~~~~~l~c~~~~~~~~p~-~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCTTTT-TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCccCcc-cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            345668888888887754 4778889999999766 59999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCcChhhhCCCCCCCEEEccCCCCCCCCcccccCCCCCCcccccccccccccc-cCCccCccccCCcc
Q psy8879         344 LSHNFLRALTQDLITPLKSLQELRLDDNDISMEPECIYVGFNTMDLELIYSGVWRHSTL-LIPVMLSLCTRSSV  416 (694)
Q Consensus       344 Ls~N~L~~l~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~~NpCdC~l~~~~~wl~~~~-~~~~~~~~C~~~~~  416 (694)
                      |++|+|+.+++..+..+ +|+.|+|++|+|.            |||++.||..|+.... ..+..++.|..+..
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~------------C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~  147 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPLH------------CSCALRWLQRWEEEGLGGVPEQKLQCHGQGP  147 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCCC------------CCGGGHHHHHHHHTTCSSCGGGCCCCSSSSC
T ss_pred             ccCCCCcccChhhhccc-cccccccCCCccc------------CCchHHHHHHHHHhccCccCcCCcEECcChH
Confidence            99999999999988755 6999999999999            9999999999996433 33456788976543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.2e-16  Score=167.98  Aligned_cols=160  Identities=22%  Similarity=0.124  Sum_probs=92.2

Q ss_pred             CCCcEEeccCCcccch-----hhhhhccCcccccccCCCCcCCCCC---CCCCCCCccccceeeccCCccccccccc---
Q psy8879         216 VTLRVLRLQGNRLTVS-----VVAALQGLRSVTDLDLSHNLLAGPL---GPSTVPRLSSLKVLSIAHNQFSSVRRGA---  284 (694)
Q Consensus       216 ~~L~~L~Ls~N~l~~~-----~~~~~~~L~~L~~L~Ls~N~l~~~i---~p~~~~~l~~L~~L~Ls~N~L~~i~~~~---  284 (694)
                      +.++.+++.+|++...     ..........++.+++++|.+....   ....+...+.++.+++++|.++......   
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~  305 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  305 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            4455555555544321     1222333455666666666554210   0111233556777777777765322111   


Q ss_pred             --ccCCcccceecccCCccccccchhh----hcccccccccCCCCccccccccch-----hcccccCeeecCCCCCCCcC
Q psy8879         285 --LAGLDKLTSLSCHHNQIDVLEDHSF----RALSTLSHLDLAHNRIVAVSGASL-----AHLSNLTTLDLSHNFLRALT  353 (694)
Q Consensus       285 --~~~L~~L~~L~Ls~N~L~~i~~~~f----~~l~~L~~L~Ls~N~L~~i~~~~f-----~~l~~L~~L~Ls~N~L~~l~  353 (694)
                        ......|+.+++++|.++......+    ...++|++|+|++|++++.....+     ...+.|++|+|++|.|+...
T Consensus       306 ~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~  385 (460)
T d1z7xw1         306 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  385 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             cccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHH
Confidence              1233568888888887765543333    345678888888888875433222     23567888888888887532


Q ss_pred             ----hhhhCCCCCCCEEEccCCCCCC
Q psy8879         354 ----QDLITPLKSLQELRLDDNDISM  375 (694)
Q Consensus       354 ----~~~~~~l~~L~~L~Ls~N~L~~  375 (694)
                          .+.+..+++|++|+|++|+|+.
T Consensus       386 ~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         386 CSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHHHHhcCCCCCEEECCCCcCCH
Confidence                2345567888888888888873

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.3e-14  Score=133.88  Aligned_cols=128  Identities=20%  Similarity=0.254  Sum_probs=78.6

Q ss_pred             hccCcccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhccccc
Q psy8879         236 LQGLRSVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTL  315 (694)
Q Consensus       236 ~~~L~~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L  315 (694)
                      |.+..++++|+|++|+++. + +..+..+++|+.|+|++|.++.++  .|..+++|++|++++|+++.+++..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i-~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-I-ENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-C-CCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCc-c-CccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccccccc
Confidence            3344455566666666553 3 344455566666666666666652  35666666666666666666666666666667


Q ss_pred             ccccCCCCccccccc-cchhcccccCeeecCCCCCCCcCh---hhhCCCCCCCEEE
Q psy8879         316 SHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFLRALTQ---DLITPLKSLQELR  367 (694)
Q Consensus       316 ~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~~---~~~~~l~~L~~L~  367 (694)
                      +.|++++|+|+.+.. ..+..+++|+.|++++|.++..+.   ..+..+++|+.||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777777776666543 445666777777777777666552   3455567777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.2e-14  Score=130.74  Aligned_cols=107  Identities=23%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             CCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCCCCCCCCcccccCCCCccEE
Q psy8879         118 VTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFL  197 (694)
Q Consensus       118 ~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L  197 (694)
                      .++++|++++|+|+.++ +.+..+ .+|+.|+|++|.|+.++.  |..+ ++|++|++++|+++.+++..+..+++|++|
T Consensus        18 ~~lr~L~L~~n~I~~i~-~~~~~l-~~L~~L~Ls~N~i~~l~~--~~~l-~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIE-NLGATL-DQFDAIDFSDNEIRKLDG--FPLL-RRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TSCEEEECTTSCCCSCC-CGGGGT-TCCSEEECCSSCCCEECC--CCCC-SSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcEEECCCCCCCccC-cccccc-ccCCEEECCCCCCCccCC--cccC-cchhhhhcccccccCCCccccccccccccc
Confidence            34444444444444443 222222 224444444444444432  3444 445555555554444444444444445555


Q ss_pred             EecCCCCCCCCc-cccCCCCCCcEEeccCCccc
Q psy8879         198 DLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLT  229 (694)
Q Consensus       198 ~Ls~N~l~~i~~-~~f~~L~~L~~L~Ls~N~l~  229 (694)
                      ++++|++..+.. ..+..+++|++|++++|.++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             eeccccccccccccccccccccchhhcCCCccc
Confidence            555544444332 23444444444444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.6e-15  Score=157.96  Aligned_cols=184  Identities=27%  Similarity=0.207  Sum_probs=125.1

Q ss_pred             CCccEEEecCCCCCCC-----CccccCCCCCCcEEeccCCcccchh----hhhhccCcccccccCCCCcCCCC----CCC
Q psy8879         192 SSLNFLDLSYNKLMTL-----SQDCLAPLVTLRVLRLQGNRLTVSV----VAALQGLRSVTDLDLSHNLLAGP----LGP  258 (694)
Q Consensus       192 ~~L~~L~Ls~N~l~~i-----~~~~f~~L~~L~~L~Ls~N~l~~~~----~~~~~~L~~L~~L~Ls~N~l~~~----i~p  258 (694)
                      +.++.+++++|.+...     ....+.....++.|++++|.+....    ...+...+.++.+++++|.+.+.    +..
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~  305 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  305 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            4455555555544221     1223345678999999999887533    33456678999999999988531    000


Q ss_pred             CCCCCccccceeeccCCccccccccc----ccCCcccceecccCCccccccchhh-----hcccccccccCCCCcccccc
Q psy8879         259 STVPRLSSLKVLSIAHNQFSSVRRGA----LAGLDKLTSLSCHHNQIDVLEDHSF-----RALSTLSHLDLAHNRIVAVS  329 (694)
Q Consensus       259 ~~~~~l~~L~~L~Ls~N~L~~i~~~~----~~~L~~L~~L~Ls~N~L~~i~~~~f-----~~l~~L~~L~Ls~N~L~~i~  329 (694)
                      ........|+.+++++|.++......    +...++|++|+|++|+|+......+     ...+.|++|+|++|+|+...
T Consensus       306 ~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~  385 (460)
T d1z7xw1         306 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  385 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             cccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHH
Confidence            01123457999999999987654333    3455689999999999875322222     24567999999999998743


Q ss_pred             c----cchhcccccCeeecCCCCCCCcChh----hhC-CCCCCCEEEccCCCCCC
Q psy8879         330 G----ASLAHLSNLTTLDLSHNFLRALTQD----LIT-PLKSLQELRLDDNDISM  375 (694)
Q Consensus       330 ~----~~f~~l~~L~~L~Ls~N~L~~l~~~----~~~-~l~~L~~L~Ls~N~L~~  375 (694)
                      .    ..+..+++|++|+|++|+++.....    .+. +...|+.|++.+|.+..
T Consensus       386 ~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            3    3456779999999999999753322    222 34579999999999873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=1.6e-14  Score=151.92  Aligned_cols=112  Identities=21%  Similarity=0.210  Sum_probs=65.9

Q ss_pred             ccccceeeccCCccccc-----ccccccCCcccceecccCCcccccc----chhhhcccccccccCCCCccccccccch-
Q psy8879         264 LSSLKVLSIAHNQFSSV-----RRGALAGLDKLTSLSCHHNQIDVLE----DHSFRALSTLSHLDLAHNRIVAVSGASL-  333 (694)
Q Consensus       264 l~~L~~L~Ls~N~L~~i-----~~~~~~~L~~L~~L~Ls~N~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~~~f-  333 (694)
                      .+.|++|+|++|.++..     ....+..+++|++|+|++|.++...    ...+..+++|++|+|++|.|++.....+ 
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            45566666666665431     1223455666777777777664321    2334566777777777777765433333 


Q ss_pred             ---hc--ccccCeeecCCCCCCCcCh----hhh-CCCCCCCEEEccCCCCCC
Q psy8879         334 ---AH--LSNLTTLDLSHNFLRALTQ----DLI-TPLKSLQELRLDDNDISM  375 (694)
Q Consensus       334 ---~~--l~~L~~L~Ls~N~L~~l~~----~~~-~~l~~L~~L~Ls~N~L~~  375 (694)
                         ..  .+.|+.|++++|+|+....    ..+ .++++|+.|+|++|++..
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence               22  3567788888887764221    112 246678888888888864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.7e-14  Score=143.66  Aligned_cols=206  Identities=18%  Similarity=0.160  Sum_probs=111.7

Q ss_pred             CCccEEEccCCCCCCCC-cccccCCCCccEEEecCCCCCCCCccccCCCCCCcEEeccCC-cccchh-hhhhccCccccc
Q psy8879         168 PNLDRLDLSHNQLYKLE-NTSFKGLSSLNFLDLSYNKLMTLSQDCLAPLVTLRVLRLQGN-RLTVSV-VAALQGLRSVTD  244 (694)
Q Consensus       168 ~~L~~L~Ls~N~L~~i~-~~~f~~L~~L~~L~Ls~N~l~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~-~~~~~~L~~L~~  244 (694)
                      .+|++||++++.++... ...+..+++|++|+++++.+++.....+..+++|++|+++++ .++... ...+.++++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            45666666666554321 123455666666666666665544555666666666666663 344221 222345566666


Q ss_pred             ccCCCCc-CCCCCCCCCCC-CccccceeeccCC--cccccc-cccccCCcccceecccCC-ccccccchhhhcccccccc
Q psy8879         245 LDLSHNL-LAGPLGPSTVP-RLSSLKVLSIAHN--QFSSVR-RGALAGLDKLTSLSCHHN-QIDVLEDHSFRALSTLSHL  318 (694)
Q Consensus       245 L~Ls~N~-l~~~i~p~~~~-~l~~L~~L~Ls~N--~L~~i~-~~~~~~L~~L~~L~Ls~N-~L~~i~~~~f~~l~~L~~L  318 (694)
                      |+++++. +++......+. ..++|+.|+++++  .++... ...+.++++|++|++++| .++......+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            6666642 22100001111 1356677777654  233211 112345677788888775 4554444556677788888


Q ss_pred             cCCCC-ccccccccchhcccccCeeecCCCCCCCcC-hhhhCCCCCCCEEEccCCCCCCCC
Q psy8879         319 DLAHN-RIVAVSGASLAHLSNLTTLDLSHNFLRALT-QDLITPLKSLQELRLDDNDISMEP  377 (694)
Q Consensus       319 ~Ls~N-~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~-~~~~~~l~~L~~L~Ls~N~L~~l~  377 (694)
                      +|++| .+++.....+.++++|+.|+++++ +..-. ......+++|   ++..++++.+.
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~ls~~~  262 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSHFTTIA  262 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCCSCCTT
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccCccCCCCC
Confidence            88774 566655566777788888888776 33221 1222334554   34666666543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=2.7e-13  Score=121.71  Aligned_cols=117  Identities=26%  Similarity=0.336  Sum_probs=62.4

Q ss_pred             cccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCC
Q psy8879         244 DLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHN  323 (694)
Q Consensus       244 ~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N  323 (694)
                      +|++++|+++. + + .+..+++|++|++++|+++++++ .+..+++|+.|++++|.|+.++  .+..+++|+.|++++|
T Consensus         2 ~L~Ls~n~l~~-l-~-~l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTV-L-C-HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSS-C-C-CGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCC-C-c-ccccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            45555555553 2 2 25555556666666666655543 3555556666666666665554  2555556666666666


Q ss_pred             ccccccc-cchhcccccCeeecCCCCCCCcC---hhhhCCCCCCCEE
Q psy8879         324 RIVAVSG-ASLAHLSNLTTLDLSHNFLRALT---QDLITPLKSLQEL  366 (694)
Q Consensus       324 ~L~~i~~-~~f~~l~~L~~L~Ls~N~L~~l~---~~~~~~l~~L~~L  366 (694)
                      +|++++. ..+..+++|+.|++++|+++..+   ......+++|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            6655532 34555566666666666554332   2333334555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=3.2e-13  Score=121.25  Aligned_cols=105  Identities=28%  Similarity=0.362  Sum_probs=94.0

Q ss_pred             ceeeccCCcccccccccccCCcccceecccCCccccccchhhhcccccccccCCCCccccccccchhcccccCeeecCCC
Q psy8879         268 KVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSGASLAHLSNLTTLDLSHN  347 (694)
Q Consensus       268 ~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N  347 (694)
                      +.|+|++|+++.++  .+.++++|++|++++|+|+.+++ .|..+++|+.|++++|.|++++  .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            57999999999885  38899999999999999999975 6889999999999999999984  4889999999999999


Q ss_pred             CCCCcCh-hhhCCCCCCCEEEccCCCCCCCC
Q psy8879         348 FLRALTQ-DLITPLKSLQELRLDDNDISMEP  377 (694)
Q Consensus       348 ~L~~l~~-~~~~~l~~L~~L~Ls~N~L~~l~  377 (694)
                      ++++++. ..+..+++|+.|++++|+++.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            9998875 56888999999999999997543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=7.4e-14  Score=146.69  Aligned_cols=245  Identities=19%  Similarity=0.166  Sum_probs=175.8

Q ss_pred             CCCCccccCCCCccEEEccCCCCCCCCcchhc---CCCCCccEEEccCCCCCCCCc----------cccccCCCCccEEE
Q psy8879         108 TVLPGKFLEGVTLHGLVISSGELKNISDGAFI---GLSSPLQALGLPNNLLSVVPT----------SALAPLAPNLDRLD  174 (694)
Q Consensus       108 ~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~---~l~~~L~~L~Ls~N~L~~lp~----------~~~~~l~~~L~~L~  174 (694)
                      ..+...+.....|+.|+|++|.+.......+.   ...++|+.|+++++.......          ..+... ++|+.|+
T Consensus        21 ~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~L~~L~   99 (344)
T d2ca6a1          21 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVR   99 (344)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEE
T ss_pred             HHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhC-CCccccc
Confidence            44555666788899999999988654433332   223569999999887654432          224455 8899999


Q ss_pred             ccCCCCCCCCcc----cccCCCCccEEEecCCCCCCCCccc-------------cCCCCCCcEEeccCCcccch----hh
Q psy8879         175 LSHNQLYKLENT----SFKGLSSLNFLDLSYNKLMTLSQDC-------------LAPLVTLRVLRLQGNRLTVS----VV  233 (694)
Q Consensus       175 Ls~N~L~~i~~~----~f~~L~~L~~L~Ls~N~l~~i~~~~-------------f~~L~~L~~L~Ls~N~l~~~----~~  233 (694)
                      |++|.++.....    .+...++|++|++++|.+.......             ....+.|+.|.+++|++...    +.
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence            999998775433    3456789999999999875322111             13467899999999988743    34


Q ss_pred             hhhccCcccccccCCCCcCCCC----CCCCCCCCccccceeeccCCcccccc----cccccCCcccceecccCCcccccc
Q psy8879         234 AALQGLRSVTDLDLSHNLLAGP----LGPSTVPRLSSLKVLSIAHNQFSSVR----RGALAGLDKLTSLSCHHNQIDVLE  305 (694)
Q Consensus       234 ~~~~~L~~L~~L~Ls~N~l~~~----i~p~~~~~l~~L~~L~Ls~N~L~~i~----~~~~~~L~~L~~L~Ls~N~L~~i~  305 (694)
                      ..+...+.|+.|++++|.+...    .....+..+++|+.|+|++|.++...    ...+..+++|++|+|++|.|+...
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence            4466778999999999998631    01344677899999999999986532    234678899999999999997654


Q ss_pred             chhh----hc--ccccccccCCCCcccccccc----ch-hcccccCeeecCCCCCCCcC
Q psy8879         306 DHSF----RA--LSTLSHLDLAHNRIVAVSGA----SL-AHLSNLTTLDLSHNFLRALT  353 (694)
Q Consensus       306 ~~~f----~~--l~~L~~L~Ls~N~L~~i~~~----~f-~~l~~L~~L~Ls~N~L~~l~  353 (694)
                      ...+    ..  .+.|+.|++++|+|+.....    .+ .++++|+.|+|++|++....
T Consensus       260 ~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            3333    22  35799999999998764332    23 25789999999999997644

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.8e-13  Score=125.67  Aligned_cols=102  Identities=31%  Similarity=0.348  Sum_probs=67.4

Q ss_pred             EEcCCCCCCCCCccccCCCCccEEEccCC-CCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEEEccCC
Q psy8879         100 LDCTLSNVTVLPGKFLEGVTLHGLVISSG-ELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRLDLSHN  178 (694)
Q Consensus       100 Ldls~n~l~~lp~~~~~~~~L~~L~Ls~n-~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L~Ls~N  178 (694)
                      ++|+++++...|..+..+++|++|++++| .++.++.++|.++.. |+.|++++|+|+.+++.+|..+ ++|++|+|++|
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~-L~~L~Ls~N~l~~i~~~~f~~l-~~L~~L~Ls~N   90 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE-LRNLTIVKSGLRFVAPDAFHFT-PRLSRLNLSFN   90 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCC-CSEEECCSSCCCEECTTGGGSC-SCCCEEECCSS
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccc-cCcceeeccccCCccccccccc-ccccceeccCC
Confidence            45556666667777777777777777544 477777777766543 7777777777777666666666 66777777776


Q ss_pred             CCCCCCcccccCCCCccEEEecCCCC
Q psy8879         179 QLYKLENTSFKGLSSLNFLDLSYNKL  204 (694)
Q Consensus       179 ~L~~i~~~~f~~L~~L~~L~Ls~N~l  204 (694)
                      +|+.++...|..+ +|+.|+|++|.+
T Consensus        91 ~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             CCcccChhhhccc-cccccccCCCcc
Confidence            6666666555543 466666666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-13  Score=139.18  Aligned_cols=210  Identities=20%  Similarity=0.150  Sum_probs=118.4

Q ss_pred             CccEEEccCCCCCCC-CccccccCCCCccEEEccCCCCCCCCcccccCCCCccEEEecCC-CCCCCCc-cccCCCCCCcE
Q psy8879         144 PLQALGLPNNLLSVV-PTSALAPLAPNLDRLDLSHNQLYKLENTSFKGLSSLNFLDLSYN-KLMTLSQ-DCLAPLVTLRV  220 (694)
Q Consensus       144 ~L~~L~Ls~N~L~~l-p~~~~~~l~~~L~~L~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N-~l~~i~~-~~f~~L~~L~~  220 (694)
                      +|++|+++++.++.. ....+.++ ++|++|+|+++.++......+..+++|++|+++++ .++...- ..+..+++|++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c-~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhC-CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            477777777665532 12235556 67777777777766554556666777777777774 3443211 12345677777


Q ss_pred             EeccCC-cccch-hhhhhcc-CcccccccCCCCc--CCCCCCCCCCCCccccceeeccCC-cccccccccccCCccccee
Q psy8879         221 LRLQGN-RLTVS-VVAALQG-LRSVTDLDLSHNL--LAGPLGPSTVPRLSSLKVLSIAHN-QFSSVRRGALAGLDKLTSL  294 (694)
Q Consensus       221 L~Ls~N-~l~~~-~~~~~~~-L~~L~~L~Ls~N~--l~~~i~p~~~~~l~~L~~L~Ls~N-~L~~i~~~~~~~L~~L~~L  294 (694)
                      |+++++ .++.. ....+.. .++|+.|+++++.  +++..-......+++|++|++++| .+++.....+.++++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            777765 33321 2222332 3567777777542  221100112344677788888775 3555444556777788888


Q ss_pred             cccCC-ccccccchhhhcccccccccCCCCccccccccc-hhcccccCeeecCCCCCCCcChhhhC
Q psy8879         295 SCHHN-QIDVLEDHSFRALSTLSHLDLAHNRIVAVSGAS-LAHLSNLTTLDLSHNFLRALTQDLIT  358 (694)
Q Consensus       295 ~Ls~N-~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~~~-f~~l~~L~~L~Ls~N~L~~l~~~~~~  358 (694)
                      +++++ .++......++.+++|+.|+++++ ++.-.-.. ...+++   |.+..+.++.+.+..++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~---L~i~~~~ls~~~~~~~~  267 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH---LQINCSHFTTIARPTIG  267 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT---SEESCCCSCCTTCSSCS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc---ccccCccCCCCCCCccC
Confidence            88874 565544455677788888888776 33221111 123344   44566677665444333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=2.1e-13  Score=132.60  Aligned_cols=129  Identities=26%  Similarity=0.296  Sum_probs=96.1

Q ss_pred             CeeEEEcCCC--CCCCCCccccCCCCccEEEccCCCCCCCCcchhcCCCCCccEEEccCCCCCCCCccccccCCCCccEE
Q psy8879          96 RVSLLDCTLS--NVTVLPGKFLEGVTLHGLVISSGELKNISDGAFIGLSSPLQALGLPNNLLSVVPTSALAPLAPNLDRL  173 (694)
Q Consensus        96 ~L~~Ldls~n--~l~~lp~~~~~~~~L~~L~Ls~n~i~~i~~~~F~~l~~~L~~L~Ls~N~L~~lp~~~~~~l~~~L~~L  173 (694)
                      .++.+++...  .+..++..+..+++|++|++++|.|+.++  .|.++. +|++|+|++|.|+.++. .+..+ ++|++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~-~L~~L~Ls~N~i~~i~~-~~~~~-~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGME-NLRILSLGRNLIKKIEN-LDAVA-DTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC--CHHHHT-TCCEEECCEEEECSCSS-HHHHH-HHCCEE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc--cccCCc-cccChhhcccccccccc-ccccc-cccccc
Confidence            4555666543  46677777888888888888888888875  355544 58888888888888765 23334 678888


Q ss_pred             EccCCCCCCCCcccccCCCCccEEEecCCCCCCCCc-cccCCCCCCcEEeccCCcccch
Q psy8879         174 DLSHNQLYKLENTSFKGLSSLNFLDLSYNKLMTLSQ-DCLAPLVTLRVLRLQGNRLTVS  231 (694)
Q Consensus       174 ~Ls~N~L~~i~~~~f~~L~~L~~L~Ls~N~l~~i~~-~~f~~L~~L~~L~Ls~N~l~~~  231 (694)
                      ++++|+++.++  .+.++++|++|++++|+++.+.. ..+..+++|++|++++|++...
T Consensus        99 ~l~~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             ECSEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccccc--cccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            88888888764  36778888888888888887754 4678888888888888887643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=3.6e-13  Score=130.81  Aligned_cols=39  Identities=33%  Similarity=0.349  Sum_probs=15.3

Q ss_pred             cccccccccCCCCccccccc-cchhcccccCeeecCCCCC
Q psy8879         311 ALSTLSHLDLAHNRIVAVSG-ASLAHLSNLTTLDLSHNFL  349 (694)
Q Consensus       311 ~l~~L~~L~Ls~N~L~~i~~-~~f~~l~~L~~L~Ls~N~L  349 (694)
                      .+++|+.|++++|+|+.+.. ..+..+++|+.|+|++|.+
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            33444444444444433321 2233344444444444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=9.1e-08  Score=88.78  Aligned_cols=121  Identities=21%  Similarity=0.154  Sum_probs=81.5

Q ss_pred             ccccccCCCCcCCCCCCCCCCCCccccceeeccCCcccccccccccCCcccceecccCCccccccc--hhhhcccccccc
Q psy8879         241 SVTDLDLSHNLLAGPLGPSTVPRLSSLKVLSIAHNQFSSVRRGALAGLDKLTSLSCHHNQIDVLED--HSFRALSTLSHL  318 (694)
Q Consensus       241 ~L~~L~Ls~N~l~~~i~p~~~~~l~~L~~L~Ls~N~L~~i~~~~~~~L~~L~~L~Ls~N~L~~i~~--~~f~~l~~L~~L  318 (694)
                      ..+.|++++....    + .+..+..+..+....+....+ ...+.++++|++|+|++|+|+.+.+  ..+..+++|+.|
T Consensus        23 ~~~~Ldls~l~~~----~-~l~~~~~~~~l~~~~~~~~~l-~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L   96 (162)
T d1koha1          23 SQQALDLKGLRSD----P-DLVAQNIDVVLNRRSSMAATL-RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL   96 (162)
T ss_dssp             SSCCBCCCCCSSC----T-TTTTTTCCCCTTSHHHHHHHH-HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCC
T ss_pred             hhCeeecccCCCC----c-hhhhccchhhcchhhhHhhhh-HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccc
Confidence            3455666654432    1 233333444444444433332 3345678899999999999988753  456778999999


Q ss_pred             cCCCCccccccccchhcccccCeeecCCCCCCCcCh-------hhhCCCCCCCEEE
Q psy8879         319 DLAHNRIVAVSGASLAHLSNLTTLDLSHNFLRALTQ-------DLITPLKSLQELR  367 (694)
Q Consensus       319 ~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~l~~-------~~~~~l~~L~~L~  367 (694)
                      +|++|+|+.+.+..+....+|+.|++++|.+.....       ..+..+|+|+.||
T Consensus        97 ~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          97 NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            999999998877555556678999999999876543       3466788888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.5e-08  Score=90.92  Aligned_cols=58  Identities=19%  Similarity=0.096  Sum_probs=27.7

Q ss_pred             cCCcccceecccCCccccccchhhhcccccccccCCCCccccccc-------cchhcccccCeee
Q psy8879         286 AGLDKLTSLSCHHNQIDVLEDHSFRALSTLSHLDLAHNRIVAVSG-------ASLAHLSNLTTLD  343 (694)
Q Consensus       286 ~~L~~L~~L~Ls~N~L~~i~~~~f~~l~~L~~L~Ls~N~L~~i~~-------~~f~~l~~L~~L~  343 (694)
                      ..+++|+.|+|++|.|+.++...+.....|+.|++++|++.....       ..+..+|+|+.||
T Consensus        88 ~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          88 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             hhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            344455555555555554444333333445555555555544322       1234556666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=5.9e-05  Score=69.50  Aligned_cols=107  Identities=16%  Similarity=0.099  Sum_probs=60.5

Q ss_pred             cccceeeccCC-ccccc----ccccccCCcccceecccCCccccccc----hhhhcccccccccCCCCcccccccc----
Q psy8879         265 SSLKVLSIAHN-QFSSV----RRGALAGLDKLTSLSCHHNQIDVLED----HSFRALSTLSHLDLAHNRIVAVSGA----  331 (694)
Q Consensus       265 ~~L~~L~Ls~N-~L~~i----~~~~~~~L~~L~~L~Ls~N~L~~i~~----~~f~~l~~L~~L~Ls~N~L~~i~~~----  331 (694)
                      ++|++|+|+++ .++.-    ....+...++|++|+|++|.++....    ..+...+.|+.|+|++|.|+.....    
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            45555555542 23321    11234445567777777776653221    2344456777777777777654322    


Q ss_pred             chhcccccCeeecCCCCCCCcCh-------hhhCCCCCCCEEEccCC
Q psy8879         332 SLAHLSNLTTLDLSHNFLRALTQ-------DLITPLKSLQELRLDDN  371 (694)
Q Consensus       332 ~f~~l~~L~~L~Ls~N~L~~l~~-------~~~~~l~~L~~L~Ls~N  371 (694)
                      .+...++|+.|+|++|.+..+..       ..+...++|+.|+++.+
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            34455678888887777665432       33445677888877664

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.79  E-value=0.00036  Score=57.95  Aligned_cols=35  Identities=11%  Similarity=-0.043  Sum_probs=28.4

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      +.++| |.+++.+|+|.|+|.|+|..+.+...+...
T Consensus        61 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   96 (100)
T d1qz1a3          61 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK   96 (100)
T ss_dssp             TSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence            34566 999999999999999999988877655443

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00053  Score=56.40  Aligned_cols=33  Identities=6%  Similarity=0.013  Sum_probs=26.8

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .++| |.+|+.+|+|.|+|+|+|..+...+-.++
T Consensus        59 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~   92 (96)
T d2c9aa1          59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAE   92 (96)
T ss_dssp             EEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEE
Confidence            3556 99999999999999999999876544443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.73  E-value=0.00052  Score=62.84  Aligned_cols=93  Identities=14%  Similarity=0.150  Sum_probs=69.4

Q ss_pred             cCCcccceecccCC-cccccc----chhhhcccccccccCCCCccccccc----cchhcccccCeeecCCCCCCCcC---
Q psy8879         286 AGLDKLTSLSCHHN-QIDVLE----DHSFRALSTLSHLDLAHNRIVAVSG----ASLAHLSNLTTLDLSHNFLRALT---  353 (694)
Q Consensus       286 ~~L~~L~~L~Ls~N-~L~~i~----~~~f~~l~~L~~L~Ls~N~L~~i~~----~~f~~l~~L~~L~Ls~N~L~~l~---  353 (694)
                      .+.++|++|+|+++ .++.-.    ...+...+.|+.|+|++|.+.....    ..+...+.|+.|+|++|.+..-.   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45689999999974 464321    2345567889999999999976433    34456789999999999997632   


Q ss_pred             -hhhhCCCCCCCEEEccCCCCCCCCc
Q psy8879         354 -QDLITPLKSLQELRLDDNDISMEPE  378 (694)
Q Consensus       354 -~~~~~~l~~L~~L~Ls~N~L~~l~~  378 (694)
                       ...+...++|++|++++|.+..+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~  117 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGN  117 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccH
Confidence             2456778999999999998876543

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00073  Score=54.90  Aligned_cols=65  Identities=15%  Similarity=-0.029  Sum_probs=44.2

Q ss_pred             ceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         435 QSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       435 ~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      +....+.|.+       +.|........ ....    ......++| |.+|+..|+|.|+|.|+|..+..+..+..+.
T Consensus        16 G~~v~l~C~~~g~p~p~i~W~~~~~~~~-~~~~----~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V   88 (90)
T d1vcaa2          16 GDSVSLTCSTTGCESPFFSWRTQIDSPL-NGKV----TNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI   88 (90)
T ss_dssp             TSCEEEEEEEESCSSCEEEEEETTCCCC-SSEE----EEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEeccCCCCceEEEEecCccce-eeee----eeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEE
Confidence            3445566665       77776665544 2221    233445667 9999999999999999999988777665443

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=96.61  E-value=0.00055  Score=56.59  Aligned_cols=58  Identities=5%  Similarity=-0.176  Sum_probs=37.9

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      +.|...........+... .....+.++| |.+++.+|+|.|+|.|+|..+.+..-+...
T Consensus        37 i~W~kng~~l~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   95 (97)
T d3dara1          37 MRWLKNGKEFKQEHRIGG-YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   95 (97)
T ss_dssp             EEEEETTEECCGGGSTTC-CEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEECCEeccccCceee-EEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence            666655544443332221 1122345677 999999999999999999988876655443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.59  E-value=0.00055  Score=62.40  Aligned_cols=88  Identities=14%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             ccCCcccceecccCCccccccc----hhhhcccccccccCCCCccccccc----cchhcccccCeeec--CCCCCCCc--
Q psy8879         285 LAGLDKLTSLSCHHNQIDVLED----HSFRALSTLSHLDLAHNRIVAVSG----ASLAHLSNLTTLDL--SHNFLRAL--  352 (694)
Q Consensus       285 ~~~L~~L~~L~Ls~N~L~~i~~----~~f~~l~~L~~L~Ls~N~L~~i~~----~~f~~l~~L~~L~L--s~N~L~~l--  352 (694)
                      +...++|++|++++|.++....    ..+...+.++.+++++|.+.....    ..+...++|+.++|  ++|.+..-  
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            3455566666666666543221    233445667777777776654322    33445566765444  45556431  


Q ss_pred             --ChhhhCCCCCCCEEEccCCC
Q psy8879         353 --TQDLITPLKSLQELRLDDND  372 (694)
Q Consensus       353 --~~~~~~~l~~L~~L~Ls~N~  372 (694)
                        ..+.+...++|+.|+++.+.
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCCCcCEEeCcCCC
Confidence              12334556777777776554

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.001  Score=53.32  Aligned_cols=61  Identities=15%  Similarity=0.013  Sum_probs=41.7

Q ss_pred             cccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879         432 ILDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       432 ~~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      ..++-...|.|.+       +.|..++....            .+.+++ |.+|+.+|+|.|+|.|+|..+..+.-+...
T Consensus        11 v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~------------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~   78 (84)
T d2nxyb2          11 LLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV   78 (84)
T ss_dssp             EETTCCEEEEEECCTTCCCEEEEECTTCCEE------------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EECCCeEEEEEEeEcCCchheEEEeecccce------------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEE
Confidence            3445556667766       66776554332            233445 889999999999999999988776655444


Q ss_pred             e
Q psy8879         504 N  504 (694)
Q Consensus       504 ~  504 (694)
                      +
T Consensus        79 V   79 (84)
T d2nxyb2          79 V   79 (84)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.37  E-value=0.0018  Score=52.66  Aligned_cols=59  Identities=12%  Similarity=-0.076  Sum_probs=40.1

Q ss_pred             ccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         433 LDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       433 ~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      .++....+.|..       +.|...++... .       ....++++| |.+|+.+|+|.|+|.|+|..+.+...
T Consensus        18 ~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~-~-------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   84 (91)
T d1cs6a3          18 LTGQMVTLECFAFGNPVPQIKWRKLDGSQT-S-------KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ   84 (91)
T ss_dssp             ETTCCEEEECEEEEESCCEEEEEECCSCCS-C-------CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ecCCcEEEEEEEEEccCCEEEEEecccccc-e-------EeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEE
Confidence            344556677766       66665443322 1       122345677 99999999999999999998876544

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00076  Score=55.36  Aligned_cols=49  Identities=8%  Similarity=-0.064  Sum_probs=35.5

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.|+..+.......    .+..+..+|+| |.+|+..|+|.|+|.|.|......
T Consensus        28 v~W~~~g~~l~~~~----~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1          28 VFWKFQNGVLKAES----PKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             EEEEESSSBCCCCS----SSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             eeeecCcccceeee----eeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            77877666654222    23344556677 999999999999999999876543

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.35  E-value=0.0013  Score=54.14  Aligned_cols=53  Identities=15%  Similarity=-0.017  Sum_probs=33.4

Q ss_pred             EEEeccCcccc-ccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         445 ILALVPTLTSQ-PLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       445 i~~l~~~~~~~-~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.|..+++... ..........+-...++| |.+++.+|+|.|+|.|+|..++..
T Consensus        33 v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   87 (97)
T d1epfa1          33 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS   87 (97)
T ss_dssp             EEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred             EEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEE
Confidence            66777665433 111111112222334566 999999999999999999887543

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.29  E-value=0.0013  Score=53.36  Aligned_cols=60  Identities=17%  Similarity=-0.046  Sum_probs=40.2

Q ss_pred             ceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEEEEEEEecCCCcceeEEEEEeeecccee
Q psy8879         435 QSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       435 ~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +....+.|..       +.|.......      ...+..+.+++..|.+++..|+|.|+|.|+|..+.....+
T Consensus        18 G~~~~l~C~~~g~P~p~v~W~~~~~~i------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~   84 (89)
T d1biha4          18 GQDVTIPCKVTGLPAPNVVWSHNAKPL------SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFET   84 (89)
T ss_dssp             TSCEEEECEEEEESCCCCEEEETTEEC------CSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEEEEEeCCCEEEEEeCCccC------ccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEEEEEE
Confidence            3445566654       5555433332      2335566666655999999999999999999888765543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=96.23  E-value=0.0017  Score=53.86  Aligned_cols=53  Identities=6%  Similarity=-0.133  Sum_probs=34.7

Q ss_pred             EEEeccCccccccceeEeeeeEEec--ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTG--LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~--~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +.|...+.......+   .++....  ..+| |.+++..|+|.|+|.|+|..+.+....
T Consensus        40 v~W~k~~~~i~~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   95 (102)
T d1fhga_          40 VMWFKDDNPVKESRH---FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA   95 (102)
T ss_dssp             EEEEETTEECCCSSS---EEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEeeeccccceee---EeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEE
Confidence            566665555442221   1222333  3455 889999999999999999988766543

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.19  E-value=0.00063  Score=57.18  Aligned_cols=33  Identities=9%  Similarity=0.003  Sum_probs=27.2

Q ss_pred             EecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         467 VTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       467 ~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      ...+|+| |.+|+.+|+|.|+|+|+|.+......
T Consensus        57 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          57 SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             ecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            3456777 99999999999999999988766544

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0019  Score=52.60  Aligned_cols=34  Identities=12%  Similarity=-0.034  Sum_probs=27.1

Q ss_pred             ecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         468 TGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      ...++| |.+|+..|+|.|+|.|+|...+.+.-+.
T Consensus        52 ~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~   86 (90)
T d1gsma1          52 TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   86 (90)
T ss_dssp             SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEE
Confidence            344667 9999999999999999997776655444

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.00078  Score=54.68  Aligned_cols=48  Identities=15%  Similarity=-0.046  Sum_probs=31.0

Q ss_pred             EEEeccCccccccceeEeeeeEEec---ccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTG---LGTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~---~gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      +.|...........+.   ++....   .++| |.+++..|+|.|+|.|+|..+.
T Consensus        28 v~W~k~g~~l~~~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   79 (91)
T d1rhfa1          28 IQWVKDGAVVQNLDQL---YIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGET   79 (91)
T ss_dssp             EEEEETTEECCSSEEE---EEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred             EEEEEeecccccceee---eeeecccCceeeEEECCCCcccCEEEEEEEEECCCC
Confidence            5676655554423222   222222   2345 8899999999999999997664

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.07  E-value=0.00094  Score=54.53  Aligned_cols=49  Identities=10%  Similarity=-0.154  Sum_probs=33.2

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      +.|....+.....   ...++....+++| |.+++..|+|.|+|.|+|.....
T Consensus        33 v~W~~~~~~i~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~   82 (92)
T d1epfa2          33 IIWKHKGRDVILK---KDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE   82 (92)
T ss_dssp             EEEEETTEEGGGG---CCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTE
T ss_pred             EEEEEcCcccccc---cceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCE
Confidence            6666655444422   2233455556677 99999999999999999965433

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.0021  Score=51.74  Aligned_cols=32  Identities=16%  Similarity=-0.056  Sum_probs=27.0

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .+++| |.+|+.+|+|.|+|.|+|..+.+...+
T Consensus        52 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~   84 (89)
T d1gl4b_          52 FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTA   84 (89)
T ss_dssp             ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eceEEEEecCCcccCEEEEEEEEECCCEEEEEE
Confidence            45677 999999999999999999988766543

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0014  Score=54.71  Aligned_cols=58  Identities=14%  Similarity=-0.011  Sum_probs=37.5

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      +.|........ .......++... .++| |.+|+.+|+|.|+|.|+|..+.....+...+
T Consensus        35 i~W~k~~~~~~-~~~~~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V   93 (101)
T d1iray1          35 ITWYKDDSKTP-VSTEQASRIHQH-KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF   93 (101)
T ss_dssp             EEEECSSTTSB-CCCCTTSSEEEE-TTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCcccc-cccccceEEecc-CCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEE
Confidence            66766554332 111122233333 4566 9999999999999999999888766554443

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.93  E-value=0.0021  Score=52.36  Aligned_cols=55  Identities=5%  Similarity=-0.145  Sum_probs=36.3

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +.|...........+.. . ....+.++| |.+++..|+|.|+|.|+|..+.++..+.
T Consensus        34 v~W~~~~~~i~~~~~~~-~-~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   89 (93)
T d1wiua_          34 ATWTVGDSGAALAPELL-V-DAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFE   89 (93)
T ss_dssp             EEEECSSSSCBCSTTSE-E-EEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeeeeeceeeeeee-e-cccccceeeccccccccccEEEEEEEEECCCEEEEEEE
Confidence            66766655554333221 1 122233455 8899999999999999999998776544

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=95.89  E-value=0.0027  Score=53.81  Aligned_cols=72  Identities=14%  Similarity=0.021  Sum_probs=50.2

Q ss_pred             ccceeeeeceeE--------EEEeccCccccc--cceeEeeeeEEecccEE-EEEEEecCCC---cceeEEEEEeeeccc
Q psy8879         433 LDQSALVLGCSE--------ILALVPTLTSQP--LSYVTSLRANVTGLGTV-QVYVQLWTNY---DPNCLLTITLYIDGD  498 (694)
Q Consensus       433 ~~~~~~~l~c~~--------i~~l~~~~~~~~--~~~i~~~~~n~~~~gtL-~~~v~~~d~G---~YtC~~~n~~~~~~~  498 (694)
                      .++-...|.|..        +.|.........  .......+.....+++| |.+|+..|+|   .|+|.|+|.++++..
T Consensus        15 ~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~   94 (111)
T d1biha2          15 IEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV   94 (111)
T ss_dssp             BTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCE
T ss_pred             cCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCceE
Confidence            355667777753        666665544432  22233445667778888 9999999988   599999999998877


Q ss_pred             eeEEee
Q psy8879         499 VIVQKN  504 (694)
Q Consensus       499 ~~~~~~  504 (694)
                      .+....
T Consensus        95 ~~~~~~  100 (111)
T d1biha2          95 VLVEYE  100 (111)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            665544

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.86  E-value=0.0027  Score=51.42  Aligned_cols=49  Identities=12%  Similarity=-0.083  Sum_probs=33.0

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.|...........     ++.+. .++| |.+++.+|+|.|+|.|+|..+.....
T Consensus        33 v~W~k~g~~i~~~~-----~~~~~-~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   82 (89)
T d1cs6a4          33 VRWLRDGQPLASQN-----RIEVS-GGELRFSKLVLEDSGMYQCVAENKHGTVYAS   82 (89)
T ss_dssp             EEEEETTEECCCCS-----SEEEE-TTEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEeeccccccc-----eeeee-eeeEEEEeecccCCEEEEEEEEeCCCEEEEE
Confidence            55665444333222     33444 3556 89999999999999999988866543

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=95.80  E-value=0.0013  Score=54.22  Aligned_cols=29  Identities=3%  Similarity=-0.294  Sum_probs=24.4

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      ..++| |.+++.+|+|.|+|.|+|..+.+.
T Consensus        59 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3          59 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             TTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            34466 999999999999999999887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.79  E-value=0.0013  Score=59.84  Aligned_cols=42  Identities=14%  Similarity=0.086  Sum_probs=24.1

Q ss_pred             cCCCCCCcEEeccC-Ccccch----hhhhhccCcccccccCCCCcCC
Q psy8879         212 LAPLVTLRVLRLQG-NRLTVS----VVAALQGLRSVTDLDLSHNLLA  253 (694)
Q Consensus       212 f~~L~~L~~L~Ls~-N~l~~~----~~~~~~~L~~L~~L~Ls~N~l~  253 (694)
                      ..+.++|++|++++ +.++..    +...+...++|++|++++|.+.
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            34557788888876 445432    2233445566666666666554

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=95.78  E-value=0.0073  Score=49.40  Aligned_cols=54  Identities=2%  Similarity=-0.331  Sum_probs=34.1

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.|...........+.... ..-.+..+| |.+++..|+|.|+|.++|..+.+...
T Consensus        36 v~W~k~~~~i~~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   90 (98)
T d1g1ca_          36 CEWYKNGVKIERSDRIYWY-WPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   90 (98)
T ss_dssp             EEEEETTEECCCCSSEEEE-EEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEeCceEEeeeeeeEEE-eccceEEEEEeccCccccCEEEEEEEEECCcEEEEE
Confidence            6666555444433322211 111222356 99999999999999999988876543

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0041  Score=51.74  Aligned_cols=59  Identities=10%  Similarity=-0.057  Sum_probs=37.8

Q ss_pred             EEEeccCccccccceeEeeeeEEec---ccEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTG---LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~---~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      +.|...++......+ .........   .++| |.+++..|+|.|+|.|+|..+.++..+....
T Consensus        34 v~W~~n~~~i~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V   96 (105)
T d1wwca_          34 LHWLHNGQPLRESKI-IHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   96 (105)
T ss_dssp             EEEEETTEECCCSSS-EEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEeCccccCCCcc-eeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            666665554442222 222222222   2345 8899999999999999999998877665543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0036  Score=52.45  Aligned_cols=33  Identities=9%  Similarity=-0.144  Sum_probs=27.5

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      +| |.+++..|+|+|+|.|+|..+++...+....
T Consensus        64 ~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v   97 (107)
T d1he7a_          64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF   97 (107)
T ss_dssp             EEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEE
Confidence            45 8999999999999999999998876665543

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=95.63  E-value=0.0025  Score=53.09  Aligned_cols=33  Identities=12%  Similarity=0.001  Sum_probs=26.9

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      .++| |.+++..|+|.|+|.|+|..+.+..-...
T Consensus        73 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L  106 (109)
T d2fdbp2          73 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL  106 (109)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEE
Confidence            3456 99999999999999999998877665443

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=95.62  E-value=0.0018  Score=52.67  Aligned_cols=30  Identities=10%  Similarity=0.066  Sum_probs=25.3

Q ss_pred             ecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         468 TGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       468 ~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      .+.++| |.+++..|+|.|+|.|+|..+.+.
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          55 KDEGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             TTSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ccceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence            345667 999999999999999999988643

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.55  E-value=0.0034  Score=51.41  Aligned_cols=58  Identities=12%  Similarity=-0.062  Sum_probs=36.0

Q ss_pred             eeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         438 LVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       438 ~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      ..|.|.+       +.|...........   ..+....+..++ +..++..|+|.|+|+|+|..+...+
T Consensus        25 v~l~C~~~g~P~p~v~W~~ng~~i~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S   90 (97)
T d1cs6a1          25 VTLTCRARANPPATYRWKMNGTELKMGP---DSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVS   90 (97)
T ss_dssp             EEECCEEEEESCCEEEEEETTEECCCST---TSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEEC
T ss_pred             EEEEEEEEEeCCCEEEEEEeeeeccCCC---CceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEE
Confidence            4567766       55555444433221   222333444455 5568899999999999999987543

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.0075  Score=50.61  Aligned_cols=37  Identities=14%  Similarity=-0.091  Sum_probs=31.1

Q ss_pred             EeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         461 TSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       461 ~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +..|.++..+|+| |.+|+.+|+|.|+|.+.+.-+..+
T Consensus        61 y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~   98 (107)
T d1l6za1          61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRT   98 (107)
T ss_dssp             CCSSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEC
T ss_pred             ceeEEEEcccccEEEcCCCchhCEEEEEEEEECCCCEE
Confidence            4568888999999 999999999999999987655433

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.0029  Score=52.94  Aligned_cols=25  Identities=8%  Similarity=-0.077  Sum_probs=21.9

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      +| |.+|+..|+|.|+|.|+|..++.
T Consensus        68 ~l~I~~v~~~D~G~Y~C~a~N~~G~~   93 (110)
T d1f97a2          68 DLIFDPVTAFDSGEYYCQAQNGYGTA   93 (110)
T ss_dssp             CEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             ceEECCCCccCCEEEEEEEEECCCcE
Confidence            44 89999999999999999987754

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0056  Score=49.40  Aligned_cols=23  Identities=4%  Similarity=-0.276  Sum_probs=20.0

Q ss_pred             EE-EEEEEecCCCcceeEEEEEee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      +| |.+|+.+|+|.|+|+|+|...
T Consensus        58 ~L~I~~v~~~D~G~Y~C~a~n~~~   81 (90)
T d1x44a1          58 ILIIEGATKADAAEYSVMTTGGQS   81 (90)
T ss_dssp             EEEEEEECTTTCSEEEEEETTEEE
T ss_pred             EEEECccccccCEEEEEEEecceE
Confidence            55 999999999999999988643

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.23  E-value=0.0038  Score=50.99  Aligned_cols=48  Identities=10%  Similarity=-0.005  Sum_probs=31.4

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      +.|...........+..   . ....++| |.+|+..|+|.|+|+|+|.++..
T Consensus        34 v~W~~~~~~l~~~~~~~---~-~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~   82 (96)
T d1l6za2          34 IQWLFNSQSLQLTERMT---L-SQNNSILRIDPIKREDAGEYQCEISNPVSVR   82 (96)
T ss_dssp             EEEEETTEECCCCTTEE---E-ETTTTEEEECSCCGGGCEEEEEEEESSSCCE
T ss_pred             EEEEEeeeeccccccee---c-cCCceEEEEeccchhhceEEEEEEEeCCCCe
Confidence            56666555444222221   1 2234566 88999999999999999976544

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=95.23  E-value=0.0023  Score=51.89  Aligned_cols=53  Identities=8%  Similarity=-0.176  Sum_probs=34.4

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +.|...........+. . .......++| |.+|+..|+|.|+|.|+|..+.+...
T Consensus        31 v~W~~~g~~l~~~~~~-~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   84 (91)
T d1tnna_          31 VTWLRKGQVLSTSARH-Q-VTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE   84 (91)
T ss_dssp             CEEESSSSTTCSSSSC-E-EEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEE
T ss_pred             EEEEEeecccccccce-e-eeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEE
Confidence            5676655444422221 1 1122234556 88999999999999999998876544

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.011  Score=49.41  Aligned_cols=32  Identities=9%  Similarity=-0.154  Sum_probs=27.2

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      ++| |.+|+.+|+|.|+|.|+|..+.++..+..
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  104 (110)
T d2avga1          72 FELHITDAQPAFTGGYRCEVSTKDKFDCSNFNL  104 (110)
T ss_dssp             EEEEEESCCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEeccCHHHCcEEEEEEEECCCeEEEEEEE
Confidence            355 99999999999999999999888766543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.005  Score=51.04  Aligned_cols=25  Identities=12%  Similarity=-0.101  Sum_probs=21.8

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      +| |.+|+.+|+|.|+|+|+|..+..
T Consensus        66 ~L~I~~v~~~D~G~Y~C~A~N~~G~~   91 (104)
T d2aw2a1          66 ILHFEPVLPNDNGSYRCSANFQSNLI   91 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEEccccHHHCCeEEEEEEcCCCeE
Confidence            45 88999999999999999987754

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0055  Score=50.53  Aligned_cols=56  Identities=7%  Similarity=-0.156  Sum_probs=36.7

Q ss_pred             EEEeccCccccccceeEeeeeEEeccc-EE-EEEEEecCCCcceeEEEEEeeeccceeEEe
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLG-TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQK  503 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~g-tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~  503 (694)
                      +.|...........+   .++....++ +| |.+++..|+|.|+|.|+|..+.....+...
T Consensus        32 v~W~k~~~~l~~~~~---~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   89 (101)
T d2cqva1          32 CTWMKFRKQIQESEH---MKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT   89 (101)
T ss_dssp             EEEEESSSBCCCSSS---EEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEE
T ss_pred             EEEEeCceeeccCCc---EEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence            677766655543332   223223333 45 899999999999999999888766554443

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.008  Score=49.83  Aligned_cols=34  Identities=15%  Similarity=-0.055  Sum_probs=28.2

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      ++| |.+++..|+|.|+|.|+|..+++...+....
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V   96 (103)
T d1wwbx_          62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF   96 (103)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECC
T ss_pred             EEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEE
Confidence            456 9999999999999999999988876665443

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0064  Score=48.71  Aligned_cols=28  Identities=14%  Similarity=-0.183  Sum_probs=22.5

Q ss_pred             EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +..|+..|+|+|+|.|+|.+++....+.
T Consensus        51 ~~~v~~~d~G~Y~C~A~N~~G~~~~~~~   78 (84)
T d2oz4a3          51 SVTVTRDLEGTYLCRARSTQGEVTREVT   78 (84)
T ss_dssp             CEECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eeccccCCCCEEEEEEEcCCCEEEEEEE
Confidence            4568899999999999999887655443

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.92  E-value=0.0047  Score=50.50  Aligned_cols=28  Identities=4%  Similarity=-0.196  Sum_probs=23.7

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccce
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDV  499 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~  499 (694)
                      +| |.+++..|+|.|+|.|+|..+.+...
T Consensus        58 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   86 (97)
T d1koaa1          58 GLTINRVKGDDKGEYTVRAKNSYGTKEEI   86 (97)
T ss_dssp             EEEESCCCSGGGSCEEEEEEETTEEEEEE
T ss_pred             EEEeCCCceecCEEEEEEEEECCCEEEEE
Confidence            45 88999999999999999987775544

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=94.89  E-value=0.0078  Score=48.43  Aligned_cols=26  Identities=12%  Similarity=-0.065  Sum_probs=21.6

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      .+.+ |.+|+.+|+|.|+|.|+|..+.
T Consensus        48 ~~~l~i~~v~~~dsG~Y~C~a~n~~g~   74 (88)
T d2fcba2          48 DPNFSIPQANHSHSGDYHCTGNIGYTL   74 (88)
T ss_dssp             CCEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             ccccccCccCHHHCCeEEEEEEeCCCC
Confidence            3445 8899999999999999997654

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.01  Score=48.55  Aligned_cols=30  Identities=13%  Similarity=0.006  Sum_probs=24.5

Q ss_pred             EE-EEEEEe-cCCCcceeEEEEEeeeccceeE
Q psy8879         472 TV-QVYVQL-WTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       472 tL-~~~v~~-~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      +| |.+++. +|+|.|+|.|+|..+.+...+.
T Consensus        66 ~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~   97 (101)
T d3b5ha1          66 ELHIENLNMEADPGQYRCNGTSSKGSDQAIIT   97 (101)
T ss_dssp             EEEECSCCTTTSSEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeccccccCCEEEEEEEEECCCEEEEEEE
Confidence            45 788885 7999999999999988766544

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0076  Score=48.71  Aligned_cols=32  Identities=9%  Similarity=-0.126  Sum_probs=26.1

Q ss_pred             cccEE-EEEEEecCCC-cceeEEEEEeeecccee
Q psy8879         469 GLGTV-QVYVQLWTNY-DPNCLLTITLYIDGDVI  500 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G-~YtC~~~n~~~~~~~~~  500 (694)
                      +.++| |.+++..|.| .|+|.|+|..+.+...+
T Consensus        54 ~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~   87 (92)
T d2ifga1          54 PSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV   87 (92)
T ss_dssp             SEEEEEEESCCSTTTTCCEEECCEETTEECCEEE
T ss_pred             cceeEEEccccccccceEEEEEEEcCCCEEEEEE
Confidence            33455 8999999999 69999999999876543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=94.62  E-value=0.011  Score=47.76  Aligned_cols=22  Identities=9%  Similarity=-0.230  Sum_probs=19.6

Q ss_pred             EEEEEecCCCcceeEEEEEeee
Q psy8879         474 QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       474 ~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      |.+|+.+|+|.|+|+++|....
T Consensus        55 I~~v~~~dsG~Y~C~a~n~~~~   76 (89)
T d1fnla2          55 IPKATLKDSGSYFCRGLVGSKN   76 (89)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEE
T ss_pred             ECccceeccceEEEEEEeCCCC
Confidence            8899999999999999986543

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.0033  Score=51.46  Aligned_cols=43  Identities=9%  Similarity=-0.081  Sum_probs=28.5

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEE
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +.|...........+     ......++| |.+|+.+|+|.|+|.|.|.
T Consensus        39 i~W~k~~~~l~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T d1n26a1          39 VHWVLRKPAAGSHPS-----RWAGMGRRLLLRSVQLHDSGNYSCYRAGR   82 (93)
T ss_dssp             EEEEEECSSSSCCCE-----EEEEESSEEEECSCCGGGCEEEEEESSSS
T ss_pred             EEEEEccccccceee-----EEecCCCEEEECCCChhcCEEEEEEECCc
Confidence            567766554442221     222334566 9999999999999998763

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.33  E-value=0.0061  Score=50.15  Aligned_cols=32  Identities=9%  Similarity=-0.045  Sum_probs=25.7

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeeccceeE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVIV  501 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~  501 (694)
                      .++| |.+|+.+|+|.|+|.|+|..+.....+.
T Consensus        64 ~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~   96 (102)
T d1f97a1          64 SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVS   96 (102)
T ss_dssp             TTEEEESCCCGGGCEEEEEEEEETTSSSEEEEE
T ss_pred             CCEEEEeECCccCCEEEEEEEEECCCCEEEEEE
Confidence            4566 9999999999999999998776554433

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.0039  Score=51.50  Aligned_cols=31  Identities=6%  Similarity=-0.162  Sum_probs=25.5

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      .++| |.+|+.+|+|.|+|.|+|..+.+...+
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~   98 (105)
T d1nbqa1          67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEV   98 (105)
T ss_dssp             TTEEECSCCCTTSCSEEEEEEEETTSSCEECC
T ss_pred             CceEEEecccccceeeEEEEEEECCCCEEEEE
Confidence            3566 899999999999999999887765443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.0071  Score=50.79  Aligned_cols=31  Identities=16%  Similarity=0.021  Sum_probs=25.9

Q ss_pred             EE-EEEEEecC-CCcceeEEEEEeeeccceeEE
Q psy8879         472 TV-QVYVQLWT-NYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       472 tL-~~~v~~~d-~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      +| |.+++..| .|.|+|+|+|..+++...+..
T Consensus        70 ~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L  102 (115)
T d2crya1          70 TLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL  102 (115)
T ss_dssp             EEECTTCCHHHHHSCEEEEEECSSCEEEEEECC
T ss_pred             EEEEeccchhcCCeEEEEEEEECCCeEEEEEEE
Confidence            35 88899999 699999999999988766554

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.016  Score=48.13  Aligned_cols=46  Identities=7%  Similarity=-0.151  Sum_probs=31.5

Q ss_pred             EEEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         444 EILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       444 ~i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      .+.|....+.......    + ....+++| |.+++..|+|.|+|.|+|...
T Consensus        36 ~i~W~kdg~~l~~~~~----~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   82 (103)
T d1iray2          36 KLQWYKDCKPLLLDNI----H-FSGVKDRLIVMNVAEKHRGNYTCHASYTYL   82 (103)
T ss_dssp             CCEEEETTEECCCCSS----S-EEEETTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred             EEEEEECCccccCCCc----E-EEecCCEEEEcccccccCcEEEEEEEECcC
Confidence            3677776555442221    2 23334566 999999999999999999765

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.022  Score=46.97  Aligned_cols=32  Identities=16%  Similarity=0.029  Sum_probs=26.7

Q ss_pred             cEE-EEEEEecCCCc-ceeEEEEEeeeccceeEE
Q psy8879         471 GTV-QVYVQLWTNYD-PNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       471 gtL-~~~v~~~d~G~-YtC~~~n~~~~~~~~~~~  502 (694)
                      ++| |.+|+..|.|. |+|.|+|..+.+...+..
T Consensus        70 ~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L  103 (107)
T d1iray3          70 TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL  103 (107)
T ss_dssp             EEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEE
T ss_pred             EEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEE
Confidence            355 89999999995 999999999988776654

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.0071  Score=51.45  Aligned_cols=33  Identities=6%  Similarity=-0.271  Sum_probs=27.3

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccceeEEee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKN  504 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~  504 (694)
                      +| |.+|+.+|+|.|+|.|+|..+.+...+...+
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEECcCChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence            45 9999999999999999999888766655443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.028  Score=46.44  Aligned_cols=32  Identities=13%  Similarity=0.060  Sum_probs=25.6

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeeccceeEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      ++| |..++.+|.|.|+|.|+|.+++.+.-+..
T Consensus        60 s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~   92 (103)
T d1iama1          60 VTTTVLVRRDHHGAQFSCRTELDLRPQGLELFE   92 (103)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECGGGTSCEEE
T ss_pred             EEEEEeeehhHCCCEEEEEEEeCCCCccCeEee
Confidence            345 77888889999999999999988765543

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.029  Score=44.63  Aligned_cols=25  Identities=8%  Similarity=-0.132  Sum_probs=20.8

Q ss_pred             EEEEEEEecCCCcceeEEEEEeeec
Q psy8879         472 TVQVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       472 tL~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      ..+..+..+|+|.|+|+|+|..+..
T Consensus        51 ~~l~~~~~~d~G~Y~C~A~N~~G~~   75 (85)
T d1rhfa2          51 SVLNVTGVTQSTMFSCEAHNLKGLA   75 (85)
T ss_dssp             EEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             eEEecCCccccEEEEEEEEcCCCcE
Confidence            3467778899999999999988854

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.57  E-value=0.013  Score=48.22  Aligned_cols=33  Identities=9%  Similarity=-0.199  Sum_probs=27.4

Q ss_pred             eeeEEecccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         463 LRANVTGLGTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       463 ~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      .+..+..+|+| |.+++.+|+|.|+|.+.+.-+.
T Consensus        52 ~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~   85 (98)
T d1hnga1          52 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGT   85 (98)
T ss_dssp             TTEEECTTSCEEESSCCGGGCEEEEEEEEETTCC
T ss_pred             CeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCC
Confidence            35567788888 9999999999999999876543

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.014  Score=48.80  Aligned_cols=27  Identities=11%  Similarity=-0.038  Sum_probs=22.9

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccc
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGD  498 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~  498 (694)
                      +| |.+++.+|+|.|+|.|+|..+....
T Consensus        69 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   96 (113)
T d2dava1          69 EMQIIKAKDNFAGNYRCEVTYKDKFDSC   96 (113)
T ss_dssp             EEEECSCCTTSCEEEEEEEECSSCEEEE
T ss_pred             EEEEccCCHHHCeEEEEEEEeCCCEEEE
Confidence            45 9999999999999999998776543

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.0064  Score=50.09  Aligned_cols=27  Identities=7%  Similarity=-0.135  Sum_probs=23.1

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeecc
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYIDG  497 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~~  497 (694)
                      +.| |.+++..|+|.|+|.|+|..+++.
T Consensus        66 ~~l~I~~v~~~D~G~Y~C~a~N~~G~~~   93 (104)
T d1nbqa2          66 GELVFDPLSASDTGEYSCEARNGYGTPM   93 (104)
T ss_dssp             CCEEESSCCGGGCCCEEEEEECSSSCCE
T ss_pred             cceEECCCCcccCcEEEEEEEECCCceE
Confidence            344 889999999999999999887664

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.026  Score=45.25  Aligned_cols=25  Identities=4%  Similarity=-0.144  Sum_probs=20.7

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      +.+ |.+++.+|+|.|+|.++|....
T Consensus        49 ~~l~i~~~~~~dsG~Y~C~a~n~~~~   74 (89)
T d1f2qa2          49 HNISITNATVEDSGTYYCTGKVWQLD   74 (89)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ceEEEeeeeeecCcEEEEEEEeCCCC
Confidence            344 8899999999999999996543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.018  Score=46.66  Aligned_cols=49  Identities=10%  Similarity=-0.048  Sum_probs=29.4

Q ss_pred             EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         445 ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       445 i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      +.|...+............. ...+..+| |.+++..|+|.|+|.|.|...
T Consensus        37 v~W~k~g~~i~~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~   86 (94)
T d1pd6a_          37 VKWLKNGQEIQMSGSKYIFE-SIGAKRTLTISQCSLADDAAYQCVVGGEKC   86 (94)
T ss_dssp             CEEEESSSEECCCSSSSEEE-EETTEEEEEECSCSSSSCEEEEEEETTEEE
T ss_pred             EEEEEcCccceeeeeeEeee-ccCCeEEeecCCCCceecEEEEEEEeeEEE
Confidence            56666655554222211111 11223355 999999999999999977543

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=92.23  E-value=0.014  Score=46.38  Aligned_cols=53  Identities=8%  Similarity=0.121  Sum_probs=34.2

Q ss_pred             ccccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEE-EEEEEecCCCcceeEEEEEee
Q psy8879         431 NILDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTV-QVYVQLWTNYDPNCLLTITLY  494 (694)
Q Consensus       431 ~~~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL-~~~v~~~d~G~YtC~~~n~~~  494 (694)
                      .+.++-...|.|.+       +.|+.+++...           ..+..++ |.+++..|+|.|+|.+.|...
T Consensus        16 ~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          16 SVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI-----------SSQASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             EEETTCCEEEEEECCCBTTBCCCEEEETTEEE-----------ESSCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             EEeCCCeEEEEEEeccCCCCeEEEEeeeceee-----------eecceeeEecCCcccCCEEEEEEccCCCc
Confidence            35555667777765       34444443332           1223445 999999999999999877544

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.28  E-value=0.026  Score=47.82  Aligned_cols=38  Identities=11%  Similarity=0.228  Sum_probs=28.0

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeeccceeEEeeccCCCCeE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVIVQKNTNCSRPWV  512 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~~~~~~~~~~~~~  512 (694)
                      +| |.+|+.+|+|.|+|.+++..+..+..+   .|...+|++
T Consensus        82 sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v---~L~V~~P~~  120 (126)
T d1pkoa_          82 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAV---ELKVEDPFY  120 (126)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEE---EEEEECTTT
T ss_pred             EEEEEEEchhHCeEEEEEEEECCCEEEEEE---EEEEeCCCE
Confidence            45 999999999999999998766665544   344455543

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.99  E-value=0.074  Score=43.92  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=21.3

Q ss_pred             EEEEE-EEecCCCcceeEEEEEeeeccceeEE
Q psy8879         472 TVQVY-VQLWTNYDPNCLLTITLYIDGDVIVQ  502 (694)
Q Consensus       472 tL~~~-v~~~d~G~YtC~~~n~~~~~~~~~~~  502 (694)
                      +|+.. ....|.|.|+|+|.|-++..+..+.+
T Consensus        64 ~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~   95 (106)
T d1zxqa1          64 TFNSTADREDGHRNFSCLAVLDLMSRGGNIFH   95 (106)
T ss_dssp             EEEEECCGGGGGCEEEEEEEEECGGGTCCEEE
T ss_pred             EEEEeeehhcCCcEEEEEEEecCCCCCCeeEe
Confidence            44444 44556778999999998877665533

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=90.39  E-value=0.036  Score=43.85  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=34.4

Q ss_pred             ccccceeeeeceeE-------EEEeccCccccccceeEeeeeEEecccEEEEEEEecCCCcceeEEEEEeee
Q psy8879         431 NILDQSALVLGCSE-------ILALVPTLTSQPLSYVTSLRANVTGLGTVQVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       431 ~~~~~~~~~l~c~~-------i~~l~~~~~~~~~~~i~~~~~n~~~~gtL~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      .+.++-...|.|..       ..|+.+++.....          .+....+.+|+..|+|.|+|.+.|..++
T Consensus        15 ~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~----------~~~~l~i~~v~~~dsG~Y~C~a~ns~~S   76 (85)
T d2fcba1          15 NVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT----------HTQPSYRFKANNNDSGEYTCQTGQTSLS   76 (85)
T ss_dssp             EEETTCEEEEEEECSSCCCTTCCEEEETTEECTT----------CCSSEEEEECCGGGCEEEEEECTTSBCC
T ss_pred             EEcCCCeEEEEEEEeeccceeEEEeecccccccc----------cccceEEeeccccCCcEEEEECCCCccc
Confidence            45566677788865       3344444333211          1122338899999999999999876543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=0.058  Score=45.08  Aligned_cols=29  Identities=14%  Similarity=0.085  Sum_probs=23.1

Q ss_pred             EE-EEEEEecCCCcceeEEEEEeeecccee
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTITLYIDGDVI  500 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~~~~~~~~~  500 (694)
                      +| |.+++.+|+|.|.|.+++.....+..+
T Consensus        89 sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~  118 (124)
T d1eaja_          89 SINVTNLQLSDIGTYQCKVKKAPGVANKKI  118 (124)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEcccEEccCEEEEEEEEECCCeEEeEE
Confidence            45 999999999999999987665554443

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.98  E-value=0.024  Score=45.44  Aligned_cols=27  Identities=4%  Similarity=-0.228  Sum_probs=22.2

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEEeee
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTITLYI  495 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~~~~  495 (694)
                      ++++| |.+++.+|+|.|+|.+.|...+
T Consensus        58 ~~~sL~I~~l~~~DsG~Y~c~~~n~~~t   85 (93)
T d1ccza1          58 VSGSLTIYNLTSSDEDEYEMESPNITDT   85 (93)
T ss_dssp             TTCCEEECSCCGGGCEEEEEECTTCCSC
T ss_pred             CeeEEEEEecChhhCEEEEEEEECCCcE
Confidence            45677 9999999999999998776443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=87.90  E-value=0.016  Score=46.53  Aligned_cols=21  Identities=10%  Similarity=-0.134  Sum_probs=18.3

Q ss_pred             EE-EEEEEecCCCcceeEEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +| |.+++.+|+|.|+|.|.|.
T Consensus        57 ~L~I~~~~~~D~G~Y~c~a~n~   78 (89)
T d1tiua_          57 ILILHNCQLGMTGEVSFQAANA   78 (89)
T ss_dssp             EEECCSCCSCCCSEECCBCSSC
T ss_pred             EEEEcCCChhcCEEEEEEECce
Confidence            45 9999999999999998664

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=0.044  Score=43.04  Aligned_cols=26  Identities=8%  Similarity=0.024  Sum_probs=20.9

Q ss_pred             cEE-EEEEEecCCCcceeEEEEEeeec
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTITLYID  496 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~~~~~  496 (694)
                      +++ |.+|+..|+|.|+|.+.|...++
T Consensus        48 ~~l~i~~v~~~d~G~Y~C~a~~s~~S~   74 (82)
T d1f2qa1          48 SSLNIVNAKFEDSGEYKCQHQQVNESE   74 (82)
T ss_dssp             SEEEECSCCGGGCEEEEEECTTSSCCC
T ss_pred             ceeEECCCChhhCCcEEEEecCCCCcc
Confidence            445 89999999999999988765443

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.54  E-value=0.099  Score=42.77  Aligned_cols=23  Identities=4%  Similarity=-0.040  Sum_probs=19.8

Q ss_pred             ccEE-EEEEEecCCCcceeEEEEE
Q psy8879         470 LGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       470 ~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +-+| |.+++.+|+|.|.|.+.+.
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~V~~~   87 (105)
T d1dr9a1          64 NLSIVILALRPSDEGTYECVVLKY   87 (105)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             cEEEEECcCChHHCeEEEEEEEeC
Confidence            3356 9999999999999999874

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.25  E-value=0.15  Score=41.78  Aligned_cols=24  Identities=13%  Similarity=0.033  Sum_probs=20.1

Q ss_pred             cccEE-EEEEEecCCCcceeEEEEE
Q psy8879         469 GLGTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       469 ~~gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      ++.+| |.+|+.+|+|.|.|.|...
T Consensus        67 ~~~sL~I~~v~~~D~G~Y~C~V~~~   91 (110)
T d1ncna_          67 DSWTLRLHNLQIKDKGLYQCIIHHK   91 (110)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CeEEEEECCCChhHCEEEEEEEEec
Confidence            44556 9999999999999999754

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.35  E-value=0.14  Score=42.58  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=18.7

Q ss_pred             cEE-EEEEEecCCCcceeEEEEE
Q psy8879         471 GTV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       471 gtL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      .+| |.+|+.+|+|.|.|.+.+.
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~  103 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNP  103 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC-
T ss_pred             EEEEECCCChHHCEEEEEEEEEC
Confidence            356 9999999999999999764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.40  E-value=0.14  Score=41.22  Aligned_cols=21  Identities=5%  Similarity=-0.037  Sum_probs=18.2

Q ss_pred             EE-EEEEEecCCCcceeEEEEE
Q psy8879         472 TV-QVYVQLWTNYDPNCLLTIT  492 (694)
Q Consensus       472 tL-~~~v~~~d~G~YtC~~~n~  492 (694)
                      +| |.+++.+|+|.|.|.+.+.
T Consensus        68 sL~I~~l~~~DsG~Y~C~v~~~   89 (97)
T d2nxyb1          68 PLIIKNLKIEDSDTYICEVEDQ   89 (97)
T ss_dssp             CEEECSCCGGGCEEEEEEETTE
T ss_pred             EEEECCCChHHCEEEEEEEecC
Confidence            45 9999999999999998654