Psyllid ID: psy8891

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH
Secondary Structure (PSIPRED)
cEEEEEccccEEEEEEccccEEEEEcccccEEEEEcccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccEEEEEEcccEEEccEEEEEEcccccEEEEEEccccEEEEEccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccEEEEEccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccc
Coil and Loop (DISEMBL)
mcakflgdptkvvsgscdrtlkiWDLRSTetkfagsscndlvtydgagttiisghfdkkvrfwdFRAEEKVRDIELHGKitsldlskgtetkfagsscndlvtydgagttiisghfdkkvrfwdFRAEEKVRDIELHGKitsldlskgkYYFVFAEGfkvqcdftravfvvdddyvavgsidgniyvwDCNTEQVEAVLKDMH
Flexible Loop (DISEMBL)
mcakflgdptkvvsgscdrtlkiWDLRStetkfagsscndlVTYDGAGTtiisghfdkkvrFWDFRAEEkvrdielhgkitsldlskgtetkfagsscNDLVTYDGAGTtiisghfdkkvrFWDFRAEekvrdielhgkitsldlskGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH
Low Complexity Region (SEG)
MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRavfvvdddyvavGSIDGNIYVWDCNTEQVEAVLKDMH
Disordered region (IsUnstruct)
*********TKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV*****
Disordered Region (DISOPRED)
MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL****
Disordered Region (DISEMBL)
MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH
Disordered Region (DISPRO)
MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q8C0J2	607	Autophagy-related protein	yes	N/A	0.798	0.266	0.417	1e-31
Q676U5	607	Autophagy-related protein	yes	N/A	0.798	0.266	0.407	3e-31
Q5RAC9	607	Autophagy-related protein	yes	N/A	0.798	0.266	0.407	3e-30
Q5I0B9	622	Autophagy-related protein	yes	N/A	0.798	0.260	0.393	1e-29
Q6KAU8	623	Autophagy-related protein	no	N/A	0.788	0.256	0.333	5e-19
Q8NAA4	619	Autophagy-related protein	no	N/A	0.788	0.258	0.333	1e-18
Q09406	534	Autophagic-related protei	yes	N/A	0.743	0.282	0.305	2e-18
Q19124	578	Autophagic-related protei	no	N/A	0.783	0.275	0.316	3e-18
O15736	612	Protein tipD OS=Dictyoste	yes	N/A	0.995	0.330	0.268	4e-14
Q8W1K8	370	Protein Mut11 OS=Chlamydo	N/A	N/A	0.773	0.424	0.267	9e-09

>sp|Q8C0J2|A16L1_MOUSE Autophagy-related protein 16-1 OS=Mus musculus GN=Atg16l1 PE=1 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 111/206 (53%), Gaps = 44/206 (21%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           + AKFL D  ++VSGS DRTLK+WDLRS    +T FAGSSCND+V  +     ++SGHFD
Sbjct: 412 LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE---QCVMSGHFD 468

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           KK+RFWD R+E  VR++EL GKIT+LDL+    T+    S +DL+               
Sbjct: 469 KKIRFWDIRSESVVREMELLGKITALDLNP-ERTELLSCSRDDLL--------------- 512

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
                                K+  L  +  K  F  A GFK   D+TR VF  D  YVA
Sbjct: 513 ---------------------KVIDLRTNAVKQTFS-APGFKCGSDWTRVVFSPDGSYVA 550

Query: 178 VGSIDGNIYVWDCNTEQVEAVLKDMH 203
            GS +G++YVW   T +VE VL   H
Sbjct: 551 AGSAEGSLYVWSVLTGKVEKVLSKQH 576

Plays an essential role in autophagy.
Mus musculus (taxid: 10090)

>sp|Q676U5|A16L1_HUMAN Autophagy-related protein 16-1 OS=Homo sapiens GN=ATG16L1 PE=1 SV=2

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 108/206 (52%), Gaps = 44/206 (21%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           + AKFL D  ++VSGS DRTLK+WDLRS    +T FAGSSCND+V  +     ++SGHFD
Sbjct: 412 LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE---QCVMSGHFD 468

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           KK+RFWD R+E  VR++EL GKIT+LDL+    T+    S +DL+      T  I   F 
Sbjct: 469 KKIRFWDIRSESIVREMELLGKITALDLNP-ERTELLSCSRDDLLKVIDLRTNAIKQTFS 527

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
                                                A GFK   D+TR VF  D  YVA
Sbjct: 528 -------------------------------------APGFKCGSDWTRVVFSPDGSYVA 550

Query: 178 VGSIDGNIYVWDCNTEQVEAVLKDMH 203
            GS +G++Y+W   T +VE VL   H
Sbjct: 551 AGSAEGSLYIWSVLTGKVEKVLSKQH 576

Plays an essential role in autophagy.

Homo sapiens (taxid: 9606)

>sp|Q5RAC9|A16L1_PONAB Autophagy-related protein 16-1 OS=Pongo abelii GN=ATG16L1 PE=2 SV=1

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 106/206 (51%), Gaps = 44/206 (21%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRST---ETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           + AKFL D  ++VSGS DRTLK WDLRS    +T FAGSSCND+V  +     ++SGHFD
Sbjct: 412 LSAKFLLDNARIVSGSHDRTLKHWDLRSKVCIKTVFAGSSCNDIVCTE---QCVMSGHFD 468

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           KK+RFWD R+E  VR++EL GKIT+LDL+    T+    S +DL+      T  I   F 
Sbjct: 469 KKIRFWDIRSESIVREMELLGKITALDLNP-ERTELLSCSRDDLLKVIDLRTNAIKQTFS 527

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
                                                A GFK   D+TR VF  D  YVA
Sbjct: 528 -------------------------------------APGFKCGSDWTRVVFSPDGSYVA 550

Query: 178 VGSIDGNIYVWDCNTEQVEAVLKDMH 203
            GS +G++Y W   T +VE VL   H
Sbjct: 551 AGSAEGSLYTWSVLTGKVEKVLSKQH 576

Plays an essential role in autophagy.

Pongo abelii (taxid: 9601)

>sp|Q5I0B9|ATG16_XENTR Autophagy-related protein 16 OS=Xenopus tropicalis GN=atg16 PE=2 SV=2

 Score =  129 bits (324), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 109/206 (52%), Gaps = 44/206 (21%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRST---ETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           + AKFL D  ++VSGS DRTLK+WDLRS    +T FAGSSCND+V  +     ++SGHFD
Sbjct: 427 LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTE---QCVMSGHFD 483

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           KK+RFWD R E  VR++EL G+IT+LDL+    T+    S +DL+               
Sbjct: 484 KKIRFWDIRTECIVRELELQGRITALDLNP-ERTQLLSCSRDDLI--------------- 527

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
                                KIT L  +  +  F  A GFK   D+TR +F  D  YV+
Sbjct: 528 ---------------------KITDLRANAVQQTFS-APGFKCGSDWTRVIFSPDGSYVS 565

Query: 178 VGSIDGNIYVWDCNTEQVEAVLKDMH 203
            GS +G +Y W+  T +VE +    H
Sbjct: 566 AGSAEGTLYFWNVLTGKVERMFSKQH 591

Plays an essential role in autophagy.

Xenopus tropicalis (taxid: 8364)

>sp|Q6KAU8|A16L2_MOUSE Autophagy-related protein 16-2 OS=Mus musculus GN=Atg16l2 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 44/204 (21%)

Query: 3   AKFLGDPTKVVSGSCDRTLKIWDL---RSTETKFAGSSCNDLVTYDGAGTTIISGHFDKK 59
           AKF     + V+GS DRT+K WDL     + T    S CND+V  D     IISGH D+K
Sbjct: 432 AKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGD---HIIISGHNDQK 488

Query: 60  VRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKK 119
           +RFWD R    ++ I + G++TSL LS                 YD     ++S   D  
Sbjct: 489 IRFWDSRGPHCIQVIPVQGRVTSLHLS-----------------YD--QLHLLSCSRDNT 529

Query: 120 VRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVG 179
           ++  D R    +R +                    A+GFK   D+T+AVF  D  Y   G
Sbjct: 530 LKVIDLRI-SNIRQV------------------FRADGFKCSSDWTKAVFSPDRSYALAG 570

Query: 180 SIDGNIYVWDCNTEQVEAVLKDMH 203
           S +G++Y+WD NT ++E  L+  H
Sbjct: 571 SSNGDLYIWDVNTGKLETSLQGPH 594

May play a role in autophagy.

Mus musculus (taxid: 10090)

>sp|Q8NAA4|A16L2_HUMAN Autophagy-related protein 16-2 OS=Homo sapiens GN=ATG16L2 PE=2 SV=2

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 93/204 (45%), Gaps = 44/204 (21%)

Query: 3   AKFLGDPTKVVSGSCDRTLKIWDL---RSTETKFAGSSCNDLVTYDGAGTTIISGHFDKK 59
           AKF     + V+GS DRT+K WDL     + T    S CND+V  D     IISGH D+K
Sbjct: 428 AKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTINVLSYCNDVVCGD---HIIISGHNDQK 484

Query: 60  VRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKK 119
           +RFWD R     + I + G++TSL LS       + S  N L                  
Sbjct: 485 IRFWDSRGPHCTQVIPVQGRVTSLSLSHDQLHLLSCSRDNTL------------------ 526

Query: 120 VRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVG 179
                              K+  L +S  +  F  A+GFK   D+T+AVF  D  Y   G
Sbjct: 527 -------------------KVIDLRVSNIRQVFR-ADGFKCGSDWTKAVFSPDRSYALAG 566

Query: 180 SIDGNIYVWDCNTEQVEAVLKDMH 203
           S DG +Y+WD +T ++E+ L+  H
Sbjct: 567 SCDGALYIWDVDTGKLESRLQGPH 590

May play a role in autophagy.

Homo sapiens (taxid: 9606)

>sp|Q09406|A16L2_CAEEL Autophagic-related protein 16.2 OS=Caenorhabditis elegans GN=atg-16.2 PE=3 SV=2

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 42/193 (21%)

Query: 12  VVSGSCDRTLKIWDL---RSTETKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRA 67
           V+SGS DRT+K WD+   R  ++   GS+  D+V   G + ++ IS HFDKKVRFWD R+
Sbjct: 346 VISGSADRTIKNWDISSIRCLKSYLVGSTVFDIVAKCGVSQSSFISSHFDKKVRFWDARS 405

Query: 68  EEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 127
            +    +EL  K++SLD+S                     G  +++   D  +   D R 
Sbjct: 406 SDATYSVELGQKVSSLDISMD-------------------GLQVLASSRDDTLSLIDVR- 445

Query: 128 EEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYV 187
                             + G  +   AE +K  CD TRA+F    +YV  GS + ++++
Sbjct: 446 ------------------NYGIIHLYSAEQYKTSCDSTRAIFSSTGEYVLAGSSNSSVFI 487

Query: 188 WDCNTEQVEAVLK 200
           W+  T ++E V+K
Sbjct: 488 WNTKTTKLEKVVK 500

Caenorhabditis elegans (taxid: 6239)

>sp|Q19124|A16L1_CAEEL Autophagic-related protein 16.1 OS=Caenorhabditis elegans GN=atg-16.1 PE=3 SV=1

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 98/202 (48%), Gaps = 43/202 (21%)

Query: 2   CAKFLGDPTKVVSGSCDRTLKIWDL---RSTETKFAGSSCNDLVTYDGAGTTII-SGHFD 57
           C KF    +  VSGS DR +KIWD+   R + + F  S   D+ T  GA  ++  SGHFD
Sbjct: 383 CVKFYQSHS-AVSGSADRVIKIWDIQNQRCSRSLFPASKVLDVATNMGASPSLFASGHFD 441

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           KK+RF+D R+ + VR +++ G+ITSLD++         S C  LV+             D
Sbjct: 442 KKLRFYDGRSTDPVRTVDMGGRITSLDVTM--------SGCELLVSTR-----------D 482

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
             +   D R  + V                   +   AE ++   D +R V    ++YVA
Sbjct: 483 DTISLIDLRTFQTV-------------------HCYSAENYRTSSDLSRVVLSSGNEYVA 523

Query: 178 VGSIDGNIYVWDCNTEQVEAVL 199
            GS +G+I+VW+ N+ ++E  L
Sbjct: 524 AGSSNGSIFVWNRNSTKLEKQL 545

Caenorhabditis elegans (taxid: 6239)

>sp|O15736|TIPD_DICDI Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 102/253 (40%), Gaps = 51/253 (20%)

Query: 2   CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDK 58
           C  F      + +G  D+ +K+WD+ S + K      S     V++     +I+    D 
Sbjct: 329 CMAFNSIGNLLATGGGDKCVKVWDVISGQQKSTLLGASQSIVSVSFSPNDESILGTSNDN 388

Query: 59  KVRFWDFRAEEKVRDIELH-GKITS--------------------LDLSKG--TETKFAG 95
             R W+         +  H GK+ +                     DL KG  T T F  
Sbjct: 389 SARLWNTELGRSRHTLTGHIGKVYTGKFINSNRVVTGSHDRTIKLWDLQKGYCTRTIFCF 448

Query: 96  SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE-LH-GKITSLDLSKGKYYFV 153
           SSCNDLV   G+GT + SGH D  VRFWD  A E  + +  +H G+ITS+  S      +
Sbjct: 449 SSCNDLVILGGSGTHLASGHVDHSVRFWDSNAGEPTQVLSSIHEGQITSITNSPTNTNQI 508

Query: 154 FAEG-----------------------FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC 190
                                      ++   ++T+A +  D  Y+A GSIDG+I +WD 
Sbjct: 509 LTNSRDHTLKIIDIRTFDTIRTFKDPEYRNGLNWTKASWSPDGRYIASGSIDGSICIWDA 568

Query: 191 NTEQVEAVLKDMH 203
              +   VL  +H
Sbjct: 569 TNGKTVKVLTKVH 581

Not known; disruption of the gene for tipD results in morphological defects.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8W1K8|MUT11_CHLRE Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 77/202 (38%), Gaps = 45/202 (22%)

Query: 4   KFLGDPTKVVSGSCDRTLKIWDLRSTE--TKFAGSSCN-DLVTYDGAGTTIISGHFDKKV 60
           KF  D + + SGS DRT+ +WD  +       AG SC    V ++  G  + +   D  +
Sbjct: 47  KFSPDGSLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSL 106

Query: 61  RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDG-AGTTIISGHFDKK 119
           + WD      +R +  H           T   F    CN    +DG AG  + SG FD+ 
Sbjct: 107 KLWDAETGACLRTLTGH-----------TNYVFC---CN----FDGAAGHLLASGSFDET 148

Query: 120 VRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVG 179
           +R WD R+   +R++  H                           T A F  D   V   
Sbjct: 149 LRLWDVRSGRCLREVPAHSD-----------------------PVTSAAFSYDGSMVVTS 185

Query: 180 SIDGNIYVWDCNTEQVEAVLKD 201
           S+DG I +WD  T      L D
Sbjct: 186 SLDGLIRLWDTQTGHCLKTLFD 207

Part of a complex involved in 'Lys-4' histone H3 methylation.

Chlamydomonas reinhardtii (taxid: 3055)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
332018873	238	Autophagy-related protein 16-1 [Acromyrm	0.802	0.684	0.480	2e-40
242020533	198	conserved hypothetical protein [Pediculu	0.798	0.818	0.477	9e-40
307169795	195	Autophagy-related protein 16-1 [Camponot	0.798	0.830	0.472	1e-39
332373034	199	unknown [Dendroctonus ponderosae]	0.802	0.819	0.465	1e-39
390348840	595	PREDICTED: autophagy-related protein 16-	0.802	0.273	0.465	9e-38
390348838	605	PREDICTED: autophagy-related protein 16-	0.802	0.269	0.465	9e-38
270017184	198	hypothetical protein TcasGA2_TC004086 [T	0.802	0.823	0.450	1e-37
189242147	224	PREDICTED: similar to G protein beta sub	0.802	0.727	0.450	1e-37
328725611	541	PREDICTED: autophagy-related protein 16-	0.812	0.304	0.449	5e-37
195444014	664	GK11448 [Drosophila willistoni] gi|19416	0.748	0.228	0.471	7e-36

>gi|332018873|gb|EGI59422.1| Autophagy-related protein 16-1 [Acromyrmex echinatior]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 123/204 (60%), Gaps = 41/204 (20%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           M AKFLG+P+KVV+GS DRTLKIWDLRS    ETKFAGSSCNDLVT DGAG+TIISGHFD
Sbjct: 1   MAAKFLGEPSKVVTGSYDRTLKIWDLRSKACIETKFAGSSCNDLVTSDGAGSTIISGHFD 60

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           +++RFWD RAE    DI L GK+TSLDLS+                       ++S   D
Sbjct: 61  QRIRFWDTRAESSSNDILLEGKVTSLDLSRD-------------------ANYLLSCVRD 101

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
             V+  D R ++ V                G +    A+GFKV  D+TRAVF  D  Y+A
Sbjct: 102 DTVKLIDLRMKKIV----------------GSFS---ADGFKVGFDWTRAVFSPDGQYIA 142

Query: 178 VGSIDGNIYVWDCNTEQVEAVLKD 201
           VGS DG++++W   T  +E +LK+
Sbjct: 143 VGSADGSVFIWSIATNAIETILKE 166

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020533|ref|XP_002430707.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515897|gb|EEB17969.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  169 bits (427), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 120/203 (59%), Gaps = 41/203 (20%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           M AKFLG+P+KVV+GS DRTLK+WDLRS    ETKFAGSSCNDLVT D AG+TIISGHFD
Sbjct: 1   MAAKFLGEPSKVVTGSHDRTLKVWDLRSKACIETKFAGSSCNDLVTSDSAGSTIISGHFD 60

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           KK+RFWD R+E    DI L+GK+TSLDLS+                       ++S   D
Sbjct: 61  KKIRFWDTRSESSANDILLNGKVTSLDLSRDAN-------------------YLLSCVRD 101

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
             ++  D R  + V                       AEGFKV CD+ RA F  D  ++A
Sbjct: 102 DTLKLLDLRMNQIVTSFS-------------------AEGFKVGCDWARATFSPDGQHIA 142

Query: 178 VGSIDGNIYVWDCNTEQVEAVLK 200
           VGS DG+I+VW  +T +V+ VLK
Sbjct: 143 VGSKDGSIFVWRGSTTKVDVVLK 165

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169795|gb|EFN62337.1| Autophagy-related protein 16-1 [Camponotus floridanus]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 119/203 (58%), Gaps = 41/203 (20%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           M AKFLG+P+KVV+GS DRTLKIWDLRS    ETKFAGSSCNDLVT DGAG+TIISGHFD
Sbjct: 28  MAAKFLGEPSKVVTGSYDRTLKIWDLRSKACIETKFAGSSCNDLVTSDGAGSTIISGHFD 87

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           +++RFWD RAE    DI L GK+TSLDLS+                       ++S   D
Sbjct: 88  QRIRFWDTRAESSSNDILLEGKVTSLDLSRD-------------------ANYLLSCVRD 128

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
             V+  D R ++ V                       A+GFKV  D+TRA F  D  Y+A
Sbjct: 129 DTVKLIDLRMKKIVGSFS-------------------ADGFKVGFDWTRAAFSPDGQYIA 169

Query: 178 VGSIDGNIYVWDCNTEQVEAVLK 200
           VGS DG++++W   T  +E +LK
Sbjct: 170 VGSADGSVFIWSIATNMIETILK 192

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373034|gb|AEE61658.1| unknown [Dendroctonus ponderosae]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 124/204 (60%), Gaps = 41/204 (20%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           M AKFLGD +KVV+GS DRTLK+WDLRS    ETKFAGSSCNDLVT D AG+TIISGHFD
Sbjct: 1   MAAKFLGDASKVVTGSHDRTLKVWDLRSRACIETKFAGSSCNDLVTVDNAGSTIISGHFD 60

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           K +RFWD R+E    +I L+GK+TSLDL++  +TK+                 +++   D
Sbjct: 61  KTIRFWDCRSESSANNIVLNGKVTSLDLAR--DTKY-----------------LLACVRD 101

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
             ++  D R  + V+                       EGFKV CD++RA F  D  YVA
Sbjct: 102 DTLKLIDLRMNQVVKSFS-------------------CEGFKVGCDWSRATFSPDGQYVA 142

Query: 178 VGSIDGNIYVWDCNTEQVEAVLKD 201
           VGS DG++Y+W  +T +VE +LK+
Sbjct: 143 VGSSDGSVYIWGVSTGKVETILKE 166

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390348840|ref|XP_003727094.1| PREDICTED: autophagy-related protein 16-like isoform 1 [Strongylocentrotus purpuratus]

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 115/204 (56%), Gaps = 41/204 (20%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           + AKFL DP K VSGS DRTLKIWDLRS   T T FAGS CNDLVT DGAGT IISGH D
Sbjct: 398 LAAKFLSDPNKFVSGSHDRTLKIWDLRSRACTRTMFAGSMCNDLVTSDGAGTNIISGHVD 457

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           KK+RFWD R+  + ++I L+GK+TSLDLS   ++  A        T D A          
Sbjct: 458 KKIRFWDARSNARTKEILLNGKVTSLDLSPDRQSLLA-------CTRDDAL--------- 501

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
                       K+ D+  +  ITS            AEGFKV CD+TRA F  D +YV 
Sbjct: 502 ------------KIVDLRTNQVITSCS----------AEGFKVACDYTRAAFSPDGEYVT 539

Query: 178 VGSIDGNIYVWDCNTEQVEAVLKD 201
            GS DG+I+ W     ++E  +KD
Sbjct: 540 AGSQDGSIFYWKAKNGEMEKQIKD 563

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390348838|ref|XP_781454.3| PREDICTED: autophagy-related protein 16-like isoform 2 [Strongylocentrotus purpuratus]

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 95/204 (46%), Positives = 115/204 (56%), Gaps = 41/204 (20%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           + AKFL DP K VSGS DRTLKIWDLRS   T T FAGS CNDLVT DGAGT IISGH D
Sbjct: 408 LAAKFLSDPNKFVSGSHDRTLKIWDLRSRACTRTMFAGSMCNDLVTSDGAGTNIISGHVD 467

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           KK+RFWD R+  + ++I L+GK+TSLDLS   ++  A        T D A          
Sbjct: 468 KKIRFWDARSNARTKEILLNGKVTSLDLSPDRQSLLA-------CTRDDAL--------- 511

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
                       K+ D+  +  ITS            AEGFKV CD+TRA F  D +YV 
Sbjct: 512 ------------KIVDLRTNQVITSCS----------AEGFKVACDYTRAAFSPDGEYVT 549

Query: 178 VGSIDGNIYVWDCNTEQVEAVLKD 201
            GS DG+I+ W     ++E  +KD
Sbjct: 550 AGSQDGSIFYWKAKNGEMEKQIKD 573

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|270017184|gb|EFA13630.1| hypothetical protein TcasGA2_TC004086 [Tribolium castaneum]

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 119/204 (58%), Gaps = 41/204 (20%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           M AKFLG+ +KVV+GS DRTLKIWDLRS    ETKFAGSSCNDLV  D +G+TIISGHFD
Sbjct: 1   MAAKFLGEASKVVTGSHDRTLKIWDLRSRACIETKFAGSSCNDLVIVDSSGSTIISGHFD 60

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           K +RFWD R+E    +I  +GK+TSLDL++  + K+                 +I    D
Sbjct: 61  KSIRFWDARSESSANNILFNGKVTSLDLTR--DAKY-----------------LICCVRD 101

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
             ++  D R  + V+                       +GFKV CD+TR  F  D  Y+A
Sbjct: 102 DTLKLLDLRMNQVVKSFS-------------------CDGFKVGCDWTRVTFSPDGQYLA 142

Query: 178 VGSIDGNIYVWDCNTEQVEAVLKD 201
           VGS DGN+Y+W  N+ +VE VLK+
Sbjct: 143 VGSADGNVYIWGVNSGKVETVLKE 166

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189242147|ref|XP_974140.2| PREDICTED: similar to G protein beta subunit, partial [Tribolium castaneum]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 119/204 (58%), Gaps = 41/204 (20%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           M AKFLG+ +KVV+GS DRTLKIWDLRS    ETKFAGSSCNDLV  D +G+TIISGHFD
Sbjct: 27  MAAKFLGEASKVVTGSHDRTLKIWDLRSRACIETKFAGSSCNDLVIVDSSGSTIISGHFD 86

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           K +RFWD R+E    +I  +GK+TSLDL++  + K+                 +I    D
Sbjct: 87  KSIRFWDARSESSANNILFNGKVTSLDLTR--DAKY-----------------LICCVRD 127

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
             ++  D R  + V+                       +GFKV CD+TR  F  D  Y+A
Sbjct: 128 DTLKLLDLRMNQVVKSFS-------------------CDGFKVGCDWTRVTFSPDGQYLA 168

Query: 178 VGSIDGNIYVWDCNTEQVEAVLKD 201
           VGS DGN+Y+W  N+ +VE VLK+
Sbjct: 169 VGSADGNVYIWGVNSGKVETVLKE 192

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328725611|ref|XP_003248547.1| PREDICTED: autophagy-related protein 16-1-like [Acyrthosiphon pisum]

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/207 (44%), Positives = 123/207 (59%), Gaps = 42/207 (20%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLR---STETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           M AKF+G+P KVV+GS DRTLKI+DLR     ETKFA SSCNDLVT +  GTTI+SGHFD
Sbjct: 342 MAAKFMGEPNKVVTGSHDRTLKIYDLRIRACVETKFAMSSCNDLVTSETVGTTIMSGHFD 401

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           K++RFWD R E+   +IE+ G++TSLDLS+          CN L          +S   D
Sbjct: 402 KRIRFWDTRTEKPHTEIEVQGRVTSLDLSR---------DCNYL----------LSCVRD 442

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA 177
             +R  D R  + +   E                   A+GFKV CD+TRAVF ++ D+VA
Sbjct: 443 DTLRLVDLRTNKIINTFE-------------------ADGFKVGCDWTRAVFNLEYDHVA 483

Query: 178 VGSIDGNIYVWD-CNTEQVEAVLKDMH 203
           VGS +G++++W   N E+   VLK+ H
Sbjct: 484 VGSSEGSVFIWAVANPEKPLVVLKNEH 510

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195444014|ref|XP_002069679.1| GK11448 [Drosophila willistoni] gi|194165764|gb|EDW80665.1| GK11448 [Drosophila willistoni]

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 110/195 (56%), Gaps = 43/195 (22%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
           M AK++ +P KVV+GS DRTLKIWDLRS    ETKFAGSSCNDLVT D  G+TIISGH+D
Sbjct: 416 MAAKYVQEPIKVVTGSHDRTLKIWDLRSIACIETKFAGSSCNDLVTTDSLGSTIISGHYD 475

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
           KK+RFWD R E++  D+ +  KITSLDLSK          CN L+               
Sbjct: 476 KKIRFWDIRTEKQADDVLMPAKITSLDLSK---------DCNYLIC-------------- 512

Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA-EGFKVQCDFTRAVFVVDDDYV 176
                        VRD      I  LDL K +    FA E FK+ CDF RA F      +
Sbjct: 513 ------------SVRD----DTIKLLDLRKNQVISTFANEHFKISCDFARATFNSGASKI 556

Query: 177 AVGSIDGNIYVWDCN 191
           A GS DG+IY+W+ N
Sbjct: 557 ACGSADGSIYIWNVN 571

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
FB|FBgn0039705	604	Atg16 [Drosophila melanogaster	0.428	0.144	0.677	1.5e-35
MGI|MGI:1924290	607	Atg16l1 "autophagy related 16-	0.482	0.161	0.542	2.5e-29
UNIPROTKB|E2R5F8	607	ATG16L1 "Uncharacterized prote	0.482	0.161	0.542	1.1e-28
UNIPROTKB|E1BGS8	623	ATG16L1 "Uncharacterized prote	0.482	0.157	0.542	2e-28
UNIPROTKB|E1BYR9	608	ATG16L1 "Uncharacterized prote	0.482	0.161	0.518	6.4e-28
RGD|1310631	605	Atg16l1 "autophagy related 16-	0.635	0.213	0.378	5.8e-25
ZFIN|ZDB-GENE-050417-401	605	atg16l1 "ATG16 autophagy relat	0.482	0.161	0.472	7.7e-23
UNIPROTKB|F1SM42	596	ATG16L1 "Uncharacterized prote	0.482	0.164	0.467	3.3e-22
UNIPROTKB|Q676U5	607	ATG16L1 "Autophagy-related pro	0.551	0.184	0.504	3.5e-22
DICTYBASE|DDB_G0275323	612	tipD "autophagy protein 16" [D	0.389	0.129	0.494	7.4e-14

FB|FBgn0039705 Atg16 [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 61/90 (67%), Positives = 72/90 (80%)

Query:     1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST---ETKFAGSSCNDLVTYDGAGTTIISGHFD 57
             M AK++ +P KVV+GS DRTLKIWDLRS    ETKFAGSSCNDLVT D  G+TIISGH+D
Sbjct:   408 MAAKYVQEPIKVVTGSHDRTLKIWDLRSIACIETKFAGSSCNDLVTTDSLGSTIISGHYD 467

Query:    58 KKVRFWDFRAEEKVRDIELHGKITSLDLSK 87
             KK+RFWD R E++  D+ +  KITSLDLSK
Sbjct:   468 KKIRFWDIRTEKQADDVLMPAKITSLDLSK 497

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0010506 "regulation of autophagy" evidence=IMP

MGI|MGI:1924290 Atg16l1 "autophagy related 16-like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 266 (98.7 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
 Identities = 57/105 (54%), Positives = 75/105 (71%)

Query:     1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST---ETKFAGSSCNDLVTYDGAGTTIISGHFD 57
             + AKFL D  ++VSGS DRTLK+WDLRS    +T FAGSSCND+V  +     ++SGHFD
Sbjct:   412 LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQC---VMSGHFD 468

Query:    58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLV 102
             KK+RFWD R+E  VR++EL GKIT+LDL+    T+    S +DL+
Sbjct:   469 KKIRFWDIRSESVVREMELLGKITALDLNP-ERTELLSCSRDDLL 512

GO:0000045 "autophagic vacuole assembly" evidence=TAS

GO:0000421 "autophagic vacuole membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2R5F8 ATG16L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 265 (98.3 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
 Identities = 57/105 (54%), Positives = 75/105 (71%)

Query:     1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST---ETKFAGSSCNDLVTYDGAGTTIISGHFD 57
             + AKFL D  ++VSGS DRTLK+WDLRS    +T FAGSSCND+V  +     ++SGHFD
Sbjct:   412 LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQC---VMSGHFD 468

Query:    58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLV 102
             KK+RFWD R+E  VR++EL GKIT+LDL+    T+    S +DL+
Sbjct:   469 KKIRFWDIRSESIVREMELLGKITALDLNP-ERTELLSCSRDDLL 512

GO:0000421 "autophagic vacuole membrane" evidence=IEA

UNIPROTKB|E1BGS8 ATG16L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 57/105 (54%), Positives = 75/105 (71%)

Query:     1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST---ETKFAGSSCNDLVTYDGAGTTIISGHFD 57
             + AKFL D  ++VSGS DRTLK+WDLRS    +T FAGSSCND+V  +     ++SGHFD
Sbjct:   428 LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQC---VMSGHFD 484

Query:    58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLV 102
             KK+RFWD R+E  VR++EL GKIT+LDL+    T+    S +DL+
Sbjct:   485 KKIRFWDIRSESIVREMELLGKITALDLNP-ERTELLSCSRDDLL 528

GO:0000421 "autophagic vacuole membrane" evidence=IEA

UNIPROTKB|E1BYR9 ATG16L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 256 (95.2 bits), Expect = 6.4e-28, Sum P(2) = 6.4e-28
 Identities = 55/106 (51%), Positives = 74/106 (69%)

Query:     1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST----ETKFAGSSCNDLVTYDGAGTTIISGHF 56
             + AKFL D  ++VSGS DRTLK+WDLRS     +T FAGSSCND+V  +     ++SGHF
Sbjct:   412 LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCNIKTVFAGSSCNDIVCTEQC---VMSGHF 468

Query:    57 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLV 102
             DKK+RFWD R E  V+++EL G+IT+LDL+    T+    S +DL+
Sbjct:   469 DKKIRFWDIRTESIVKELELLGRITALDLNS-ERTELLTCSRDDLL 513

GO:0000421 "autophagic vacuole membrane" evidence=IEA

RGD|1310631 Atg16l1 "autophagy related 16-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 222 (83.2 bits), Expect = 5.8e-25, Sum P(2) = 5.8e-25
 Identities = 53/140 (37%), Positives = 81/140 (57%)

Query:    12 VVSGSCDRTLKIWD-----LRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 66
             +++ S D   +IW      LR T T  +G   +     D A   I+SG  D+ ++ WD R
Sbjct:   362 LLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNA--RIVSGSHDRTLKLWDLR 419

Query:    67 AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126
             ++    +++    + +     G +T FAGSSCND+V  +     ++SGHFDKK+RFWD R
Sbjct:   420 SKV-CEEMQSLCVLMTFAFLLGIKTVFAGSSCNDIVCTEQC---VMSGHFDKKIRFWDIR 475

Query:   127 AEEKVRDIELHGKITSLDLS 146
             +E  VR++EL GKIT+LDL+
Sbjct:   476 SESVVREMELLGKITALDLN 495

GO:0000421 "autophagic vacuole membrane" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005776 "autophagic vacuole" evidence=ISO

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050417-401 atg16l1 "ATG16 autophagy related 16-like 1 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 212 (79.7 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
 Identities = 51/108 (47%), Positives = 69/108 (63%)

Query:     1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST----ETKFAGSSCNDLVTYDGAGTTIISGHF 56
             + A+FL D  ++VSGS DRTLK+WDLRS     +T FAGSSCND+V  +     ++SGHF
Sbjct:   407 LSARFLLDNARIVSGSYDRTLKLWDLRSKVCSMKTVFAGSSCNDIVCTEQC---VMSGHF 463

Query:    57 DKKVRFWDFRAEEKVRDIELHG--KITSLDLSKGTETKFAGSSCNDLV 102
             DKKVRFWD   +      +L+   ++TSLDL+    T+    S +DLV
Sbjct:   464 DKKVRFWDISYQNYHIQKQLNKLCRVTSLDLNHD-RTELLTCSRDDLV 510

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1SM42 ATG16L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 205 (77.2 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
 Identities = 50/107 (46%), Positives = 67/107 (62%)

Query:     1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST---ETKFAGSSCNDLVTYDGAGTTIISGHFD 57
             + AKFL D  ++VSGS DRTLK+WDLRS    +T FAGSSCND+V  +     ++SGHFD
Sbjct:   412 LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQC---VMSGHFD 468

Query:    58 KKVRFWDFRAEEK--VRDIELHGKITSLDLSKGTETKFAGSSCNDLV 102
             KK+RFWD R   +  V   +L GK T+   +    T+    S +DL+
Sbjct:   469 KKIRFWDIRYNTRSLVSLGQLLGKQTASRFNP-ERTELLSCSRDDLL 514

GO:0000421 "autophagic vacuole membrane" evidence=IEA

UNIPROTKB|Q676U5 ATG16L1 "Autophagy-related protein 16-1" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 3.5e-22, P = 3.5e-22
 Identities = 60/119 (50%), Positives = 78/119 (65%)

Query:     1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST---ETKFAGSSCNDLVTYDGAGTTIISGHFD 57
             + AKFL D  ++VSGS DRTLK+WDLRS    +T FAGSSCND+V  +     ++SGHFD
Sbjct:   412 LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQC---VMSGHFD 468

Query:    58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF 116
             KK+RFWD R+E  VR++EL GKIT+LDL+    T+    S +DL+      T  I   F
Sbjct:   469 KKIRFWDIRSESIVREMELLGKITALDLNP-ERTELLSCSRDDLLKVIDLRTNAIKQTF 526

GO:0015031 "protein transport" evidence=IEA

GO:0000421 "autophagic vacuole membrane" evidence=IEA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=ISS

GO:0051260 "protein homooligomerization" evidence=NAS

GO:0000045 "autophagic vacuole assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0275323 tipD "autophagy protein 16" [Dictyostelium discoideum (taxid:44689)]

 Score = 189 (71.6 bits), Expect = 7.4e-14, P = 7.4e-14
 Identities = 42/85 (49%), Positives = 55/85 (64%)

Query:     4 KFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 60
             KF+    +VV+GS DRT+K+WDL+    T T F  SSCNDLV   G+GT + SGH D  V
Sbjct:   415 KFINS-NRVVTGSHDRTIKLWDLQKGYCTRTIFCFSSCNDLVILGGSGTHLASGHVDHSV 473

Query:    61 RFWDFRAEEKVRDIE-LH-GKITSL 83
             RFWD  A E  + +  +H G+ITS+
Sbjct:   474 RFWDSNAGEPTQVLSSIHEGQITSI 498

GO:0030587 "sorocarp development" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0034274 "Atg12-Atg5-Atg16 complex" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0016236 "macroautophagy" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	203
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 42/204 (20%), Positives = 67/204 (32%), Gaps = 46/204 (22%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVT---YDGAGTTIISGHFD 57
               F  D   + S S D+T+K+WD+ + +         D V    +   GT + S   D
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156

Query: 58  KKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF 116
             ++ WD R  + V  +  H G++ S                   V +   G  ++S   
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNS-------------------VAFSPDGEKLLSSSS 197

Query: 117 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYV 176
           D  ++ WD    + +  +  H                               F  D   +
Sbjct: 198 DGTIKLWDLSTGKCLGTLRGHENG-----------------------VNSVAFSPDGYLL 234

Query: 177 AVGSIDGNIYVWDCNTEQVEAVLK 200
           A GS DG I VWD  T +    L 
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 49/206 (23%), Positives = 72/206 (34%), Gaps = 48/206 (23%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG---SSCNDLVTYDGAGTTIISGHFD 57
            C  F  D   + +GS D T+K+WDL + E        +     V     GT + SG  D
Sbjct: 13  TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD 72

Query: 58  KKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF 116
           K +R WD    E VR +  H   ++S+  S                     G  + S   
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSP-------------------DGRILSSSSR 113

Query: 117 DKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDY 175
           DK ++ WD    + +  +  H   + S+  S                         D  +
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP------------------------DGTF 149

Query: 176 VAVGSIDGNIYVWDCNTEQVEAVLKD 201
           VA  S DG I +WD  T +  A L  
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTG 175

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 47/194 (24%), Positives = 69/194 (35%), Gaps = 48/194 (24%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDL-VTYDGAGTTIISGHFD 57
               F  D T V S S D T+K+WDLR+ +      G +     V +   G  ++S   D
Sbjct: 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198

Query: 58  KKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF 116
             ++ WD    + +  +  H   + S                   V +   G  + SG  
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNS-------------------VAFSPDGYLLASGSE 239

Query: 117 DKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDY 175
           D  +R WD R  E V+ +  H   +TSL  S                         D   
Sbjct: 240 DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP------------------------DGKR 275

Query: 176 VAVGSIDGNIYVWD 189
           +A GS DG I +WD
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.8 bits (151), Expect = 1e-11
 Identities = 47/219 (21%), Positives = 74/219 (33%), Gaps = 37/219 (16%)

Query: 5   FLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL----VTYDGAGTTIISGHFDKKV 60
           F  D + + SGS D T+++WDLRS+ +     S +      V +   G  + SG  D  V
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 61  RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 120
           R WD    + +          +L   +G  +  + S    L+        +  G  D  +
Sbjct: 309 RLWDLETGKLL-------SSLTLKGHEGPVSSLSFSPDGSLL--------VSGGSDDGTI 353

Query: 121 RFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEG------------------FKVQC 162
           R WD R  + ++ +E H  + S+  S                                  
Sbjct: 354 RLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413

Query: 163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD 201
             T   F  D   +A GS D  I +WD  T         
Sbjct: 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.9 bits (115), Expect = 4e-07
 Identities = 55/218 (25%), Positives = 81/218 (37%), Gaps = 20/218 (9%)

Query: 2   CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--------GSSCNDLVTYDGAGTTIIS 53
              F  D   ++SGS D T+K+WDL + E              S   L + DG    + S
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129

Query: 54  GHFDKKVRFWDFR-AEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLV----TYDGA 107
              D  V+ WD     + +R +E H + +TSL  S   +   +GSS +  +       G 
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK 189

Query: 108 GTTIISGHFDKKVRFWDFRAEEKVR--DIELHGKITSLDLSKGKYYFVFAEGFKVQCDFT 165
             + ++GH    V    F  +  +        G I   DLS GK       G        
Sbjct: 190 PLSTLAGH-TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV-- 246

Query: 166 RAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203
            + F  D   +A GS DG I +WD  +          H
Sbjct: 247 -SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 43/205 (20%), Positives = 68/205 (33%), Gaps = 14/205 (6%)

Query: 7   GDPTKVVSGSCDRTLKIWDLRSTETKFA-----GSSCNDLVTYDGAGTTIISGHFDKKVR 61
           G+   + S S D T+K+WDL +             S   L               D  ++
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 62  FWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSC-NDLVTYDGAG----TTIISGH 115
            WD R  + +  +  H   ++SL  S       A  S    +  +D +      + +SGH
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 116 FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDY 175
            D  V  +       +      G I   DL           G           F  D   
Sbjct: 242 SDSVVSSFSPD-GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS--VLSVAFSPDGKL 298

Query: 176 VAVGSIDGNIYVWDCNTEQVEAVLK 200
           +A GS DG + +WD  T ++ + L 
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLT 323

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG0315|consensus	311		100.0
KOG0271|consensus	480		99.98
KOG0272|consensus	459		99.97
KOG0272|consensus	459		99.96
KOG0271|consensus	480		99.96
KOG0263|consensus	707		99.95
KOG0275|consensus	508		99.94
KOG0279|consensus	315		99.94
KOG0279|consensus	315		99.94
KOG0285|consensus	460		99.94
KOG0291|consensus	893		99.94
KOG0295|consensus	406		99.94
KOG0315|consensus	311		99.94
KOG0266|consensus	456		99.94
KOG0288|consensus	459		99.94
KOG0293|consensus	519		99.93
KOG0286|consensus	343		99.93
KOG0282|consensus	503		99.93
KOG0265|consensus	338		99.93
KOG0266|consensus	456		99.93
KOG0273|consensus	524		99.92
KOG0647|consensus	347		99.92
KOG0281|consensus	499		99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0316|consensus	307		99.92
KOG0263|consensus	707		99.92
KOG0296|consensus	399		99.92
KOG0286|consensus	343		99.91
KOG1407|consensus	313		99.91
KOG0278|consensus	334		99.91
KOG0319|consensus	775		99.91
KOG0276|consensus	794		99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0284|consensus	464		99.91
KOG0265|consensus	338		99.91
KOG0310|consensus	487		99.9
KOG0318|consensus	603		99.9
KOG0283|consensus	712		99.9
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
KOG0278|consensus	334		99.89
KOG0640|consensus	430		99.89
KOG0284|consensus	464		99.89
KOG0645|consensus	312		99.89
KOG0643|consensus	327		99.88
KOG1446|consensus	311		99.88
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.88
KOG0281|consensus	499		99.88
KOG0274|consensus	537		99.88
KOG0285|consensus	460		99.88
KOG0292|consensus	1202		99.88
KOG0277|consensus	311		99.88
KOG0319|consensus	775		99.87
KOG0295|consensus	406		99.87
KOG0291|consensus	893		99.87
KOG0282|consensus	503		99.87
KOG1273|consensus	405		99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.87
KOG0276|consensus	794		99.86
KOG0313|consensus	423		99.86
PTZ00421	493	coronin; Provisional	99.86
KOG0293|consensus	519		99.86
PTZ00420	568	coronin; Provisional	99.86
KOG0277|consensus	311		99.86
KOG0288|consensus	459		99.86
KOG0646|consensus	476		99.86
KOG1036|consensus	323		99.85
KOG0318|consensus	603		99.85
KOG0643|consensus	327		99.84
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.84
KOG0267|consensus	825		99.84
KOG0305|consensus	484		99.83
KOG0275|consensus	508		99.83
KOG0645|consensus	312		99.83
KOG0306|consensus	888		99.82
KOG0647|consensus	347		99.82
KOG0294|consensus	362		99.82
KOG1407|consensus	313		99.82
KOG0313|consensus	423		99.82
KOG0292|consensus	1202		99.81
KOG0308|consensus	735		99.81
KOG0274|consensus	537		99.81
KOG0973|consensus	942		99.81
KOG0273|consensus	524		99.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.8
KOG0299|consensus	479		99.8
KOG0268|consensus	433		99.8
KOG4283|consensus	397		99.79
KOG0310|consensus	487		99.79
KOG0308|consensus	735		99.78
KOG2096|consensus	420		99.78
KOG0264|consensus	422		99.78
KOG0772|consensus	641		99.78
KOG0299|consensus	479		99.78
KOG0289|consensus	506		99.78
KOG0316|consensus	307		99.78
KOG0641|consensus	350		99.77
KOG1446|consensus	311		99.77
KOG0302|consensus	440		99.76
KOG0306|consensus	888		99.76
KOG0973|consensus	942		99.76
KOG0289|consensus	506		99.76
KOG0772|consensus	641		99.75
KOG0296|consensus	399		99.75
KOG0639|consensus	705		99.75
KOG0639|consensus	705		99.75
KOG0269|consensus	839		99.74
KOG0269|consensus	839		99.74
KOG0303|consensus	472		99.74
KOG0294|consensus	362		99.73
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.73
KOG0300|consensus	481		99.72
KOG0640|consensus	430		99.72
KOG1408|consensus	1080		99.72
KOG0270|consensus	463		99.72
KOG0267|consensus	825		99.7
KOG0301|consensus	745		99.7
KOG0302|consensus	440		99.7
KOG0264|consensus	422		99.7
KOG0268|consensus	433		99.69
KOG0646|consensus	476		99.69
KOG1332|consensus	299		99.69
KOG0300|consensus	481		99.68
KOG2055|consensus	514		99.68
KOG2106|consensus	626		99.67
KOG0641|consensus	350		99.67
KOG2048|consensus	691		99.67
KOG0270|consensus	463		99.66
KOG1539|consensus	910		99.66
KOG1408|consensus	1080		99.66
KOG1274|consensus	933		99.66
KOG0321|consensus	720		99.65
KOG0301|consensus	745		99.65
KOG0283|consensus	712		99.65
KOG1036|consensus	323		99.63
KOG1274|consensus	933		99.63
KOG0305|consensus	484		99.61
KOG2445|consensus	361		99.61
KOG2055|consensus	514		99.61
KOG0307|consensus	1049		99.61
KOG0771|consensus	398		99.59
KOG0321|consensus	720		99.59
KOG4378|consensus	673		99.58
KOG1273|consensus	405		99.58
KOG0642|consensus	577		99.57
KOG0303|consensus	472		99.56
KOG0649|consensus	325		99.53
KOG0642|consensus	577		99.53
KOG2096|consensus	420		99.51
KOG4328|consensus	498		99.5
KOG2919|consensus	406		99.5
KOG1007|consensus	370		99.49
PRK01742	429	tolB translocation protein TolB; Provisional	99.48
KOG1332|consensus	299		99.48
KOG1034|consensus	385		99.48
KOG0649|consensus	325		99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.47
KOG1009|consensus	434		99.46
KOG1188|consensus	376		99.45
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.44
KOG0307|consensus	1049		99.42
KOG1007|consensus	370		99.42
KOG1034|consensus	385		99.41
KOG1445|consensus	1012		99.4
KOG4283|consensus	397		99.39
KOG2919|consensus	406		99.38
KOG1524|consensus	737		99.37
KOG1539|consensus	910		99.37
KOG1188|consensus	376		99.35
KOG2048|consensus	691		99.35
KOG2445|consensus	361		99.35
KOG0650|consensus	733		99.34
KOG2106|consensus	626		99.32
KOG1445|consensus	1012		99.31
COG2319	466	FOG: WD40 repeat [General function prediction only	99.31
KOG1009|consensus	434		99.3
KOG1538|consensus	1081		99.27
KOG1517|consensus	1387		99.27
KOG0644|consensus	1113		99.26
PRK03629	429	tolB translocation protein TolB; Provisional	99.26
PRK11028	330	6-phosphogluconolactonase; Provisional	99.25
KOG1310|consensus	758		99.25
KOG1063|consensus	764		99.25
KOG3881|consensus	412		99.25
KOG4328|consensus	498		99.25
KOG0650|consensus	733		99.24
KOG4378|consensus	673		99.22
KOG1963|consensus	792		99.22
KOG0322|consensus	323		99.21
KOG1063|consensus	764		99.2
KOG1587|consensus	555		99.2
COG2319	466	FOG: WD40 repeat [General function prediction only	99.19
KOG0290|consensus	364		99.16
KOG1272|consensus	545		99.15
KOG4227|consensus	609		99.15
KOG0322|consensus	323		99.15
PRK11028	330	6-phosphogluconolactonase; Provisional	99.15
KOG1517|consensus	1387		99.14
KOG2394|consensus	636		99.13
KOG2110|consensus	391		99.12
KOG1538|consensus	1081		99.1
KOG1240|consensus	1431		99.09
KOG2110|consensus	391		99.05
KOG1334|consensus	559		99.05
KOG0290|consensus	364		99.04
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.03
KOG1523|consensus	361		99.02
KOG2321|consensus	703		99.02
KOG1272|consensus	545		99.0
KOG4547|consensus	541		98.99
PRK04922	433	tolB translocation protein TolB; Provisional	98.99
PRK05137	435	tolB translocation protein TolB; Provisional	98.98
KOG0974|consensus	967		98.98
PRK02889	427	tolB translocation protein TolB; Provisional	98.98
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.94
KOG1310|consensus	758		98.93
KOG3881|consensus	412		98.92
KOG0974|consensus	967		98.92
PRK01742	429	tolB translocation protein TolB; Provisional	98.91
KOG4497|consensus	447		98.89
KOG2139|consensus	445		98.89
KOG2394|consensus	636		98.89
KOG0280|consensus	339		98.86
KOG1064|consensus	2439		98.86
KOG0771|consensus	398		98.86
KOG2139|consensus	445		98.85
KOG3914|consensus	390		98.83
KOG4497|consensus	447		98.82
KOG4227|consensus	609		98.81
KOG1963|consensus	792		98.8
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.79
KOG1587|consensus	555		98.78
KOG0644|consensus	1113		98.77
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.77
KOG2695|consensus	425		98.76
PRK00178	430	tolB translocation protein TolB; Provisional	98.75
KOG2111|consensus	346		98.75
KOG2695|consensus	425		98.75
PRK04792	448	tolB translocation protein TolB; Provisional	98.73
PRK04922	433	tolB translocation protein TolB; Provisional	98.71
PRK01029	428	tolB translocation protein TolB; Provisional	98.67
PRK03629	429	tolB translocation protein TolB; Provisional	98.66
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.65
KOG1524|consensus	737		98.63
KOG2321|consensus	703		98.6
KOG1523|consensus	361		98.57
PRK05137	435	tolB translocation protein TolB; Provisional	98.57
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.55
KOG2111|consensus	346		98.55
PRK02889	427	tolB translocation protein TolB; Provisional	98.55
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.51
KOG0280|consensus	339		98.48
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.45
KOG4190|consensus	1034		98.45
KOG1240|consensus	1431		98.45
KOG2315|consensus	566		98.43
KOG2315|consensus	566		98.42
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.4
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.38
KOG3914|consensus	390		98.38
KOG1334|consensus	559		98.38
KOG1354|consensus	433		98.37
KOG1354|consensus	433		98.37
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.35
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.32
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.29
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.28
KOG4714|consensus	319		98.25
KOG2066|consensus	846		98.17
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.17
KOG1275|consensus	1118		98.16
PRK01029	428	tolB translocation protein TolB; Provisional	98.12
KOG2041|consensus	1189		98.09
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.09
PRK00178	430	tolB translocation protein TolB; Provisional	98.07
KOG4532|consensus	344		98.07
KOG4547|consensus	541		98.07
PRK04792	448	tolB translocation protein TolB; Provisional	98.06
KOG1064|consensus	2439		98.02
KOG0882|consensus	558		97.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.96
PRK04043	419	tolB translocation protein TolB; Provisional	97.93
KOG4714|consensus	319		97.92
KOG1409|consensus	404		97.85
KOG1409|consensus	404		97.76
KOG2314|consensus	698		97.75
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.73
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.71
COG4946	668	Uncharacterized protein related to the periplasmic	97.68
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.65
KOG4532|consensus	344		97.63
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.59
KOG0309|consensus	1081		97.56
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.52
KOG0309|consensus	1081		97.49
KOG4649|consensus	354		97.43
KOG4190|consensus	1034		97.43
KOG1645|consensus	463		97.39
KOG2314|consensus	698		97.35
KOG0882|consensus	558		97.34
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.34
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.22
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.21
COG4946	668	Uncharacterized protein related to the periplasmic	97.17
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.17
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.16
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.08
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.06
PRK02888	635	nitrous-oxide reductase; Validated	96.99
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.96
KOG2041|consensus	1189		96.93
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.89
PRK04043	419	tolB translocation protein TolB; Provisional	96.84
KOG1275|consensus	1118		96.78
KOG2114|consensus	933		96.77
PRK02888	635	nitrous-oxide reductase; Validated	96.75
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.74
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.73
KOG2066|consensus	846		96.72
KOG1832|consensus	1516		96.53
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.49
KOG1912|consensus	1062		96.44
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.43
KOG1645|consensus	463		96.4
KOG3617|consensus	1416		96.34
KOG2444|consensus	238		96.27
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.26
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.26
KOG4640|consensus	665		96.16
KOG4640|consensus	665		96.04
KOG2444|consensus	238		95.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.77
KOG1832|consensus	1516		95.37
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.23
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.12
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.08
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.05
KOG1920|consensus	1265		95.03
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.72
KOG1912|consensus	1062		94.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.34
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.34
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.27
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.25
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.1
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.97
KOG3617|consensus	1416		93.94
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.92
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.68
KOG3621|consensus	726		93.64
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.6
KOG2079|consensus	1206		93.6
KOG3621|consensus	726		93.37
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.23
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.22
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.17
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.15
KOG1920|consensus	1265		93.08
KOG2079|consensus	1206		92.97
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.97
KOG1008|consensus	783		92.19
KOG1008|consensus	783		91.89
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.8
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.68
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.48
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	91.24
PHA02713	557	hypothetical protein; Provisional	91.11
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	90.59
KOG2395|consensus	644		90.59
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	90.56
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.24
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.62
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	88.78
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.62
KOG4649|consensus	354		88.12
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.08
PRK13616	591	lipoprotein LpqB; Provisional	87.51
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.36
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.74
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	86.02
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	84.26
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	83.64
COG3391	381	Uncharacterized conserved protein [Function unknow	81.97
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	81.68
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	80.39
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	80.37

>KOG0315|consensus

Probab=100.00  E-value=6.3e-31  Score=187.71  Aligned_cols=179  Identities=22%  Similarity=0.297  Sum_probs=143.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee--C
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL--H   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~--~   77 (203)
                      +|.|..+|++.+|||+||++||||++...+  .+....+...+...|+...|++|..+|.|+|||++...+...+..  .
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~  167 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD  167 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence            678999999999999999999999998543  233344445566778888999999999999999998877666543  3


Q ss_pred             CeEEEEEecCCCceEEEecCCceE-----------------------------EEEcCCCCEEEEeeCCCeEEEEECCCC
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDL-----------------------------VTYDGAGTTIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~l~s~s~d~~i~iWd~~~~  128 (203)
                      ..|.++...+++.++.+....+.+                             ..|+|++++|+++|.|++++||+....
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            569999999999998876544332                             357899999999999999999998765


Q ss_pred             -ceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         129 -EKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       129 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                       .....++.+                       +..+..++|+.|++||+||+.|+.+|+||+..++.++.+.+||
T Consensus       248 ~kle~~l~gh-----------------------~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  248 FKLELVLTGH-----------------------QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             eeeEEEeecC-----------------------CceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence             111111111                       2245678899999999999999999999999999999999997

>KOG0271|consensus

Probab=99.98  E-value=2.1e-31  Score=200.04  Aligned_cols=201  Identities=25%  Similarity=0.422  Sum_probs=150.6

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--cCcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEE-Eeeee
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--GSSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV-RDIEL   76 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~-~~~~~   76 (203)
                      +|++|+|+|++|+|||.|.|+|+||+.+....+.  ++.. +..++|+||++.|+||+.||+|++||..+++++ +.+..
T Consensus       119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~g  198 (480)
T KOG0271|consen  119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRG  198 (480)
T ss_pred             EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccC
Confidence            5899999999999999999999999988665443  3322 345689999999999999999999999888765 56666


Q ss_pred             CC-eEEEEEecCC-----CceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          77 HG-KITSLDLSKG-----TETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        77 ~~-~v~~~~~~~~-----~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      |. .|+++++.|-     ...+..++..+.                       ++.|..+| +|+++|.|++|++|+...
T Consensus       199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d  277 (480)
T KOG0271|consen  199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD  277 (480)
T ss_pred             cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccc
Confidence            64 4888888762     222333333333                       34555555 899999999999999999


Q ss_pred             CceEEEEeccce-EEEEEecCCcE------------------------------------EEEeec-C------------
Q psy8891         128 EEKVRDIELHGK-ITSLDLSKGKY------------------------------------YFVFAE-G------------  157 (203)
Q Consensus       128 ~~~~~~~~~~~~-v~~~~~~~~~~------------------------------------~~~~~~-~------------  157 (203)
                      |.+.+++..|.+ |+.++++.+..                                    .++.+. +            
T Consensus       278 G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k  357 (480)
T KOG0271|consen  278 GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK  357 (480)
T ss_pred             hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence            888888777643 77766652110                                    011111 0            


Q ss_pred             ------eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         158 ------FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       158 ------~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                            ..++.-+..+.|+||+++++++|-|..|++||.++|+.+.+++||
T Consensus       358 kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH  408 (480)
T KOG0271|consen  358 KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH  408 (480)
T ss_pred             cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc
Confidence                  012234567789999999999999999999999999999999987

>KOG0272|consensus

Probab=99.97  E-value=5.2e-30  Score=194.30  Aligned_cols=201  Identities=16%  Similarity=0.299  Sum_probs=166.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--EEecCcC-ceEEEEeCC--CCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSC-NDLVTYDGA--GTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~~~~~~~-~~~~~~~~~--~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      .|.|+.|++.|+|||++|.+|+|+......  .+.++.. ...+.|.|.  +..++||+.||++|+|++.+..++..+++
T Consensus       180 ~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g  259 (459)
T KOG0272|consen  180 GCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG  259 (459)
T ss_pred             eeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhc
Confidence            578999999999999999999999987543  3444332 334556664  56999999999999999999988888888


Q ss_pred             C-CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          77 H-GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        77 ~-~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      | ..|..++|+|++..+.+++...+                       .+.|.+||..++||+-|..-|+||+|++.++-
T Consensus       260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im  339 (459)
T KOG0272|consen  260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM  339 (459)
T ss_pred             chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEE
Confidence            7 45899999999999887765432                       36899999999999999999999999999998


Q ss_pred             EEeccc-eEEEEEecCCcEEEEeecCee------------------EEeeeEEEEEEc-CCCEEEEecCCCcEEEEeCCC
Q psy8891         133 DIELHG-KITSLDLSKGKYYFVFAEGFK------------------VQCDFTRAVFVV-DDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       133 ~~~~~~-~v~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~-~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      .+..|. +|.+++++|+.+.++...+-.                  +.--++.+.|.| .|.+|+|+|.|++++||...+
T Consensus       340 ~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~  419 (459)
T KOG0272|consen  340 FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT  419 (459)
T ss_pred             EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC
Confidence            888774 599999999999988654310                  111345678888 578999999999999999999


Q ss_pred             ceeeeeeccC
Q psy8891         193 EQVEAVLKDM  202 (203)
Q Consensus       193 ~~~~~~~~~~  202 (203)
                      .++++++-||
T Consensus       420 ~~~~ksLaGH  429 (459)
T KOG0272|consen  420 WSPLKSLAGH  429 (459)
T ss_pred             cccchhhcCC
Confidence            9999999887

>KOG0272|consensus

Probab=99.96  E-value=1.4e-28  Score=186.52  Aligned_cols=164  Identities=24%  Similarity=0.378  Sum_probs=130.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      .|+|+|+|++|+|+|.|.+-|+||+.+.....   .+......++|.+||..++|||.|..-||||+|++.++..+..| 
T Consensus       266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~  345 (459)
T KOG0272|consen  266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI  345 (459)
T ss_pred             eeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccc
Confidence            48999999999999999999999999865322   22233445788999999999999999999999999999999887 


Q ss_pred             CeEEEEEecCCCceEEEecCCceE-----------------------EEEcC-CCCEEEEeeCCCeEEEEECCCCceEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRD  133 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~-~~~~l~s~s~d~~i~iWd~~~~~~~~~  133 (203)
                      .+|.+++|+|.+-.+.+++..+++                       +.|+| .|++|+|+++|++++||..++..+++.
T Consensus       346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks  425 (459)
T KOG0272|consen  346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS  425 (459)
T ss_pred             cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence            569999888877777777666543                       34555 567777777777777777777777776


Q ss_pred             Eeccc-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         134 IELHG-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       134 ~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      +..|. +|-+                        +.+++++.+++|++.|+++++|.
T Consensus       426 LaGHe~kV~s------------------------~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  426 LAGHEGKVIS------------------------LDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hcCCccceEE------------------------EEeccCCceEEEeccCceeeecc
Confidence            66552 3433                        44557899999999999999996

>KOG0271|consensus

Probab=99.96  E-value=2.5e-27  Score=178.23  Aligned_cols=179  Identities=25%  Similarity=0.438  Sum_probs=129.0

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---Eec-CcCceEEEEe-----CCCCEEEEecCCCeEEEEECCCceEE
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAG-SSCNDLVTYD-----GAGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~-~~~~~~~~~~-----~~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      +|++|+|||++|+||+.||+|++||.++++..   +.+ ......++|.     |....|+|+|.||+|+|||+..+.++
T Consensus       161 lcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~  240 (480)
T KOG0271|consen  161 LCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV  240 (480)
T ss_pred             EEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE
Confidence            58999999999999999999999999886653   222 2223344553     45679999999999999999988887


Q ss_pred             EeeeeC-CeEEEEEecCCC-------------------------------------------------------------
Q psy8891          72 RDIELH-GKITSLDLSKGT-------------------------------------------------------------   89 (203)
Q Consensus        72 ~~~~~~-~~v~~~~~~~~~-------------------------------------------------------------   89 (203)
                      ..+..| .+|+++.+.-++                                                             
T Consensus       241 ~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~  320 (480)
T KOG0271|consen  241 RTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE  320 (480)
T ss_pred             EEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence            776554 234443332100                                                             


Q ss_pred             ----------------ceEEEecCCc------------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891          90 ----------------ETKFAGSSCN------------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        90 ----------------~~~~~~~~~~------------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                                      ++++.++...                        ..+.|+||+++|+++|+|+.||+||-++|+
T Consensus       321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk  400 (480)
T KOG0271|consen  321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK  400 (480)
T ss_pred             HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence                            0111121111                        124688888899999999999999988888


Q ss_pred             eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      -+.+|..|-.                       .+..++.+.|.++|++||.|.++++||+++.++...|+||
T Consensus       401 ~lasfRGHv~-----------------------~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh  450 (480)
T KOG0271|consen  401 FLASFRGHVA-----------------------AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH  450 (480)
T ss_pred             hhhhhhhccc-----------------------eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence            7666654421                       1234455678899999999999999999999999999887

>KOG0263|consensus

Probab=99.95  E-value=3.4e-27  Score=190.51  Aligned_cols=160  Identities=23%  Similarity=0.373  Sum_probs=132.0

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +.++|+|+.+.|+|+|+|++||+|.+.+..+..  .++ .+...+.|.|.|-+++|||.|++.++|......+++.+..|
T Consensus       455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh  534 (707)
T KOG0263|consen  455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH  534 (707)
T ss_pred             eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence            468999999999999999999999999866542  332 23445678899999999999999999998877776666554


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeec
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAE  156 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  156 (203)
                       +.|.+                   +.|.|++.++++||.|++||+||+.+|..++.|..|..                 
T Consensus       535 lsDV~c-------------------v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-----------------  578 (707)
T KOG0263|consen  535 LSDVDC-------------------VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-----------------  578 (707)
T ss_pred             ccccce-------------------EEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-----------------
Confidence             33444                   45566778999999999999999999999888866521                 


Q ss_pred             CeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         157 GFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                            .++.++|+|+|++|++|+.|+.|.+||+..|+++..+++|
T Consensus       579 ------~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H  618 (707)
T KOG0263|consen  579 ------PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH  618 (707)
T ss_pred             ------ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc
Confidence                  3456778899999999999999999999999999999877

>KOG0275|consensus

Probab=99.94  E-value=1.9e-26  Score=170.82  Aligned_cols=201  Identities=21%  Similarity=0.384  Sum_probs=153.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE----e-------cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF----A-------GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~----~-------~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~   70 (203)
                      |++|+|||++|+|||-||-|-+||..+++...    .       .......+.|+.|.+.|+||+.||.||||.++++++
T Consensus       218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C  297 (508)
T KOG0275|consen  218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC  297 (508)
T ss_pred             heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH
Confidence            78999999999999999999999998765321    1       112223456788999999999999999999999999


Q ss_pred             EEeee-eC-CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891          71 VRDIE-LH-GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        71 ~~~~~-~~-~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~  125 (203)
                      ++.+. .| ..|+++.|+.|...++.++....                       -+.|+++|..|++++.|++|++|+.
T Consensus       298 lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~  377 (508)
T KOG0275|consen  298 LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHG  377 (508)
T ss_pred             HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecC
Confidence            87775 33 56999999998877665443322                       2579999999999999999999999


Q ss_pred             CCCceEEEEeccc---eEEEEEec-CC--cEEE---------EeecC---------eeEEeeeEEEEEEcCCCEEEEecC
Q psy8891         126 RAEEKVRDIELHG---KITSLDLS-KG--KYYF---------VFAEG---------FKVQCDFTRAVFVVDDDYVAVGSI  181 (203)
Q Consensus       126 ~~~~~~~~~~~~~---~v~~~~~~-~~--~~~~---------~~~~~---------~~~~~~~~~~~~~~~~~~l~s~s~  181 (203)
                      .+.+|+.++...+   .|+++-+- .+  .++.         ....|         .+-..++..++++|.|.++++.++
T Consensus       378 KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE  457 (508)
T KOG0275|consen  378 KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE  457 (508)
T ss_pred             cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence            9999887775432   24443221 11  1111         11112         222347888999999999999999


Q ss_pred             CCcEEEEeCCCceeeeeeccC
Q psy8891         182 DGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       182 d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      |+.++.|..-+|++.+++..|
T Consensus       458 D~vlYCF~~~sG~LE~tl~Vh  478 (508)
T KOG0275|consen  458 DGVLYCFSVLSGKLERTLPVH  478 (508)
T ss_pred             CcEEEEEEeecCceeeeeecc
Confidence            999999999999999998754

>KOG0279|consensus

Probab=99.94  E-value=1.6e-25  Score=162.26  Aligned_cols=169  Identities=25%  Similarity=0.443  Sum_probs=126.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCe-------EEecCc-CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTET-------KFAGSS-CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK   79 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~-------~~~~~~-~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~   79 (203)
                      +...++++|.|.++.+|++.....       .+.++. ...-+..++++++.+|+|+|+++|+||+.+++..+.+..|..
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~  106 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK  106 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence            356899999999999999975321       233332 234466789999999999999999999999998888888754


Q ss_pred             -EEEEEecCCCceEEEecCCce------------------------EEEEcCC--CCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          80 -ITSLDLSKGTETKFAGSSCND------------------------LVTYDGA--GTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        80 -v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~--~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                       |.+++++++...++.|+...+                        ++.|+|.  ..+|+++|+|++||+||+++-+...
T Consensus       107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~  186 (315)
T KOG0279|consen  107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT  186 (315)
T ss_pred             ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence             999999998887776655432                        4678888  6899999999999999999877666


Q ss_pred             EEeccc-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         133 DIELHG-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       133 ~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .+..+. .++.++                        ++|||..+++|+.||.+.+||+++++.++++.
T Consensus       187 ~~~gh~~~v~t~~------------------------vSpDGslcasGgkdg~~~LwdL~~~k~lysl~  231 (315)
T KOG0279|consen  187 TFIGHSGYVNTVT------------------------VSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE  231 (315)
T ss_pred             ccccccccEEEEE------------------------ECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence            665543 244444                        44566666666666666666666666665553

>KOG0279|consensus

Probab=99.94  E-value=2.7e-24  Score=155.99  Aligned_cols=189  Identities=23%  Similarity=0.336  Sum_probs=147.0

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCe--EEecCc-CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee--C
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTET--KFAGSS-CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL--H   77 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~~~~~~-~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~--~   77 (203)
                      |..++||.+.+|+|+|+++|+||+.+++.  .+.++. ....+++++++..++|||.|++|++|++-.+.....-+.  .
T Consensus        69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~  148 (315)
T KOG0279|consen   69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHR  148 (315)
T ss_pred             eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCc
Confidence            66789999999999999999999998653  344443 345578999999999999999999999866544322221  4


Q ss_pred             CeEEEEEecCCC--ceEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          78 GKITSLDLSKGT--ETKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        78 ~~v~~~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      +-|.++.|+|..  ..++.++..                       .+.++++|||...++|+.|+++.+||++.++.+.
T Consensus       149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly  228 (315)
T KOG0279|consen  149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY  228 (315)
T ss_pred             CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE
Confidence            569999999973  444433322                       2346789999999999999999999999999998


Q ss_pred             EEeccceEEEEEecCCcEEEEeecCeeE--------------------------EeeeEEEEEEcCCCEEEEecCCCcEE
Q psy8891         133 DIELHGKITSLDLSKGKYYFVFAEGFKV--------------------------QCDFTRAVFVVDDDYVAVGSIDGNIY  186 (203)
Q Consensus       133 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~l~s~s~d~~v~  186 (203)
                      .++....|.++.++|+++.+..+.+..+                          ......+++++||..|++|=.|+.|+
T Consensus       229 sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ir  308 (315)
T KOG0279|consen  229 SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIR  308 (315)
T ss_pred             eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence            8888889999999999887765433111                          01224566788999999999999999


Q ss_pred             EEeCC
Q psy8891         187 VWDCN  191 (203)
Q Consensus       187 ~wd~~  191 (203)
                      +|.+.
T Consensus       309 v~qv~  313 (315)
T KOG0279|consen  309 VWQVA  313 (315)
T ss_pred             EEEee
Confidence            99865

>KOG0285|consensus

Probab=99.94  E-value=9.5e-26  Score=168.56  Aligned_cols=158  Identities=25%  Similarity=0.396  Sum_probs=126.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCc---CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSS---CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      |+++-|-+++++|||.|++++|||+.+++.+.....   ...-+++++--.+|+|++.|+.||.|||...+.++..-+| 
T Consensus       156 ~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHl  235 (460)
T KOG0285|consen  156 SVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHL  235 (460)
T ss_pred             EEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcccc
Confidence            788999999999999999999999999886644332   2334667776679999999999999999999988776655 


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecC
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEG  157 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  157 (203)
                      ..|++++++|.-                   ..|++|+.|.++|+||+|+...+..+..|..                  
T Consensus       236 S~V~~L~lhPTl-------------------dvl~t~grDst~RvWDiRtr~~V~~l~GH~~------------------  278 (460)
T KOG0285|consen  236 SGVYCLDLHPTL-------------------DVLVTGGRDSTIRVWDIRTRASVHVLSGHTN------------------  278 (460)
T ss_pred             ceeEEEeccccc-------------------eeEEecCCcceEEEeeecccceEEEecCCCC------------------
Confidence            678999888733                   3899999999999999999887777765521                  


Q ss_pred             eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         158 FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                           .+..+.+.|-+..++|||.|++|++||+..|+...++-.
T Consensus       279 -----~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~  317 (460)
T KOG0285|consen  279 -----PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH  317 (460)
T ss_pred             -----cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec
Confidence                 122333445667899999999999999999998887743

>KOG0291|consensus

Probab=99.94  E-value=1.5e-24  Score=174.86  Aligned_cols=199  Identities=19%  Similarity=0.365  Sum_probs=153.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      |++++|||++++||+.||+||+||...+-+...   +......+.|...++.|+|++.||+||.||+......+++..+.
T Consensus       355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~  434 (893)
T KOG0291|consen  355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE  434 (893)
T ss_pred             eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC
Confidence            788999999999999999999999998776432   23334567788899999999999999999999988888887665


Q ss_pred             e--EEEEEecCCCceEEEecCCce------------------------EEEEcCCCCEEEEeeCCCeEEEEECCCC-ceE
Q psy8891          79 K--ITSLDLSKGTETKFAGSSCND------------------------LVTYDGAGTTIISGHFDKKVRFWDFRAE-EKV  131 (203)
Q Consensus        79 ~--v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~~~  131 (203)
                      +  ..+++..|.+..+.+|....-                        .++|+|++..|+|+|||++||+||+-.. ...
T Consensus       435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v  514 (893)
T KOG0291|consen  435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV  514 (893)
T ss_pred             ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence            4  566677777887777654421                        1468999999999999999999998543 334


Q ss_pred             EEEeccceEEEEEecCCcEEEEee--cC----------ee--------------------------EEeeeEEEEEEcCC
Q psy8891         132 RDIELHGKITSLDLSKGKYYFVFA--EG----------FK--------------------------VQCDFTRAVFVVDD  173 (203)
Q Consensus       132 ~~~~~~~~v~~~~~~~~~~~~~~~--~~----------~~--------------------------~~~~~~~~~~~~~~  173 (203)
                      .+++....+..+++.|+...+...  .|          ..                          ....++.++|++||
T Consensus       515 Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG  594 (893)
T KOG0291|consen  515 ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADG  594 (893)
T ss_pred             eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCC
Confidence            556666677777777654333221  10          00                          01256788999999


Q ss_pred             CEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         174 DYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       174 ~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ..+++|+....|.|||+.++-+++.++
T Consensus       595 ~~IlAgG~sn~iCiY~v~~~vllkkfq  621 (893)
T KOG0291|consen  595 KCILAGGESNSICIYDVPEGVLLKKFQ  621 (893)
T ss_pred             CEEEecCCcccEEEEECchhheeeeEE
Confidence            999999999999999999999998875

>KOG0295|consensus

Probab=99.94  E-value=2.7e-25  Score=166.19  Aligned_cols=177  Identities=18%  Similarity=0.285  Sum_probs=140.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCC-Ce---EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRST-ET---KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~-~~---~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      .++|+..|+.|+|+|.|=.+++||..+. ++   ...+......+++-|.+++++|++.|.+||+|++.++-++.++..|
T Consensus       155 di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  155 DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             EEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc
Confidence            5789999999999999999999999762 22   1222233456778888999999999999999999999999999877


Q ss_pred             Ce-EEEEEecCCCceEEEecCCceE-----------------------EEEcCC---------------CCEEEEeeCCC
Q psy8891          78 GK-ITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGA---------------GTTIISGHFDK  118 (203)
Q Consensus        78 ~~-v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~---------------~~~l~s~s~d~  118 (203)
                      .+ |+.++.+.|+..+..++....+                       +.|.|.               ++++.++++|+
T Consensus       235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk  314 (406)
T KOG0295|consen  235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK  314 (406)
T ss_pred             hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence            54 7777888777666655544332                       334332               36899999999


Q ss_pred             eEEEEECCCCceEEEEeccce-EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         119 KVRFWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      +||+||+.++.++.++..+.. |.                        .++|+|.|+||+|+..|+++++||++.+++.+
T Consensus       315 tIk~wdv~tg~cL~tL~ghdnwVr------------------------~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk  370 (406)
T KOG0295|consen  315 TIKIWDVSTGMCLFTLVGHDNWVR------------------------GVAFSPGGKYILSCADDKTLRVWDLKNLQCMK  370 (406)
T ss_pred             eEEEEeccCCeEEEEEecccceee------------------------eeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence            999999999998887765532 33                        35577899999999999999999999999999


Q ss_pred             eeccC
Q psy8891         198 VLKDM  202 (203)
Q Consensus       198 ~~~~~  202 (203)
                      +++.|
T Consensus       371 ~~~ah  375 (406)
T KOG0295|consen  371 TLEAH  375 (406)
T ss_pred             ccCCC
Confidence            99854

>KOG0315|consensus

Probab=99.94  E-value=8.8e-25  Score=156.42  Aligned_cols=180  Identities=21%  Similarity=0.376  Sum_probs=138.9

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCe----EEecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTET----KFAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~----~~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      ..+.||++.|++|+. ..||+||+.+...    .+.++ .-...+.|..+|+.++|||.||++||||+|...+.+.++..
T Consensus        46 LeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~  124 (311)
T KOG0315|consen   46 LEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN  124 (311)
T ss_pred             EEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC
Confidence            345789888888865 8999999987443    23333 33456789999999999999999999999998888888877


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc--ceEEEEEecCCcEEEEee
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH--GKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~  155 (203)
                      .+|+++.++|.                   ...|+++..++.|++||+....+.+.+...  ..+.++.+.++...++..
T Consensus       125 spVn~vvlhpn-------------------QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~  185 (311)
T KOG0315|consen  125 SPVNTVVLHPN-------------------QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA  185 (311)
T ss_pred             CCcceEEecCC-------------------cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence            88888877764                   347999999999999999987666554332  457777777765554432


Q ss_pred             cC-----------------e-------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc-eeeeeeccC
Q psy8891         156 EG-----------------F-------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE-QVEAVLKDM  202 (203)
Q Consensus       156 ~~-----------------~-------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~-~~~~~~~~~  202 (203)
                      ..                 +       .....++++.++||+++|+++|.|.+++||+.+.. ++..++++|
T Consensus       186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh  257 (311)
T KOG0315|consen  186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH  257 (311)
T ss_pred             cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC
Confidence            11                 0       11235678899999999999999999999999987 777788776

>KOG0266|consensus

Probab=99.94  E-value=6.7e-25  Score=177.64  Aligned_cols=162  Identities=27%  Similarity=0.493  Sum_probs=129.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCC-CeE--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRST-ETK--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~-~~~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      .++|+||++.+++|+.|++||+||+... ...  +.+ ......++|+|+++.++||+.|++|||||++.+++...+..|
T Consensus       208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h  287 (456)
T KOG0266|consen  208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH  287 (456)
T ss_pred             eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc
Confidence            6899999999999999999999999443 332  222 233456788999999999999999999999999999888876


Q ss_pred             C-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEeccceEEEEEecCCcEEEEe
Q psy8891          78 G-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE--KVRDIELHGKITSLDLSKGKYYFVF  154 (203)
Q Consensus        78 ~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~  154 (203)
                      . .|..+++                   +++++.|+++++|+.|++||+.++.  +.+.+......              
T Consensus       288 s~~is~~~f-------------------~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--------------  334 (456)
T KOG0266|consen  288 SDGISGLAF-------------------SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS--------------  334 (456)
T ss_pred             CCceEEEEE-------------------CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC--------------
Confidence            4 5666655                   4567799999999999999999987  33443322111              


Q ss_pred             ecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         155 AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                            . .+..+.|+|++++|+++..|+++++||+..+.+..++.+|+
T Consensus       335 ------~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~  376 (456)
T KOG0266|consen  335 ------A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS  376 (456)
T ss_pred             ------C-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence                  1 23467788999999999999999999999999999988774

>KOG0288|consensus

Probab=99.94  E-value=6.2e-26  Score=171.91  Aligned_cols=198  Identities=35%  Similarity=0.662  Sum_probs=156.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-----ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-----AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      .+.|.++...|+||+.|..|++|++...+...     ........+.+++++.++++++.|+++++|++.......++.+
T Consensus       180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG  259 (459)
T KOG0288|consen  180 DVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG  259 (459)
T ss_pred             eeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc
Confidence            47888998999999999999999997655211     1112234467888999999999999999999999988888887


Q ss_pred             C-CeEEEEEecCCCceEEE-----------------------ecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          77 H-GKITSLDLSKGTETKFA-----------------------GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        77 ~-~~v~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      | ++|+++.+......++.                       ++.|+.+++   ....++|+..|++||+||+++..+..
T Consensus       260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~---~~~~~~SgH~DkkvRfwD~Rs~~~~~  336 (459)
T KOG0288|consen  260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC---SISDVISGHFDKKVRFWDIRSADKTR  336 (459)
T ss_pred             cccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEe---cceeeeecccccceEEEeccCCceee
Confidence            6 56777776655544433                       333344333   25578999999999999999999999


Q ss_pred             EEeccceEEEEEecCCcEEEEe----------------------ecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         133 DIELHGKITSLDLSKGKYYFVF----------------------AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       133 ~~~~~~~v~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      ++++++.|++++++.++..+..                      ++++...+++++++|+|++.|+++||.||.|+||++
T Consensus       337 sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  337 SVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV  416 (459)
T ss_pred             EeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence            9999999999988776544432                      233444568899999999999999999999999999


Q ss_pred             CCceeeeeeccC
Q psy8891         191 NTEQVEAVLKDM  202 (203)
Q Consensus       191 ~~~~~~~~~~~~  202 (203)
                      .++++++.++..
T Consensus       417 ~tgKlE~~l~~s  428 (459)
T KOG0288|consen  417 FTGKLEKVLSLS  428 (459)
T ss_pred             cCceEEEEeccC
Confidence            999999998754

>KOG0293|consensus

Probab=99.93  E-value=2.8e-24  Score=163.29  Aligned_cols=201  Identities=20%  Similarity=0.237  Sum_probs=158.5

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCe------EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTET------KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~------~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +.||++|++|||||.|.+.-+|++.....      ...+..++.-+.|+||+++|++|+.|..+++||+.+++..+.+..
T Consensus       230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~  309 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS  309 (519)
T ss_pred             EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence            57999999999999999999999865322      122334455578999999999999999999999999998766654


Q ss_pred             C--CeEEEEEecCCCceEEEecCCceEEE-----------------------EcCCCCEEEEeeCCCeEEEEECCCCceE
Q psy8891          77 H--GKITSLDLSKGTETKFAGSSCNDLVT-----------------------YDGAGTTIISGHFDKKVRFWDFRAEEKV  131 (203)
Q Consensus        77 ~--~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~s~s~d~~i~iWd~~~~~~~  131 (203)
                      .  -.+.+.++.||+..+++|+....++.                       .++||.++++...|..|++++..+....
T Consensus       310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr  389 (519)
T KOG0293|consen  310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR  389 (519)
T ss_pred             CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence            3  46889999999999999887765543                       4567889999999999999999877777


Q ss_pred             EEEeccceEEEEEecCCcEEEE-eecC-------------------eeEEeeeEEEEEEcC-CCEEEEecCCCcEEEEeC
Q psy8891         132 RDIELHGKITSLDLSKGKYYFV-FAEG-------------------FKVQCDFTRAVFVVD-DDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       132 ~~~~~~~~v~~~~~~~~~~~~~-~~~~-------------------~~~~~~~~~~~~~~~-~~~l~s~s~d~~v~~wd~  190 (203)
                      ..++.+.++.+++++.+..++. ....                   .+...-+.+.+|... ..++++||+|+.|+||+.
T Consensus       390 ~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr  469 (519)
T KOG0293|consen  390 GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR  469 (519)
T ss_pred             ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence            6777788899999988754443 2211                   111223456777654 479999999999999999


Q ss_pred             CCceeeeeeccCC
Q psy8891         191 NTEQVEAVLKDMH  203 (203)
Q Consensus       191 ~~~~~~~~~~~~~  203 (203)
                      .+|+++.+++||.
T Consensus       470 ~sgkll~~LsGHs  482 (519)
T KOG0293|consen  470 ISGKLLAVLSGHS  482 (519)
T ss_pred             cCCceeEeecCCc
Confidence            9999999999983

>KOG0286|consensus

Probab=99.93  E-value=2.5e-23  Score=151.89  Aligned_cols=201  Identities=22%  Similarity=0.330  Sum_probs=154.9

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCc------eEE
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAE------EKV   71 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~------~~~   71 (203)
                      ++++|++|.++|+|+|-||.+.+||.-+.....  ..... +..++++|.++.+++||.|+..-||++...      ...
T Consensus        59 ~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~  138 (343)
T KOG0286|consen   59 YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS  138 (343)
T ss_pred             eeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceee
Confidence            578999999999999999999999987644222  22222 344689999999999999999999999754      223


Q ss_pred             EeeeeCC-eEEEEEecCCCceEEEecCCceE-----------------------EEEcC-CCCEEEEeeCCCeEEEEECC
Q psy8891          72 RDIELHG-KITSLDLSKGTETKFAGSSCNDL-----------------------VTYDG-AGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        72 ~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~-~~~~l~s~s~d~~i~iWd~~  126 (203)
                      +++..|. -+.+..|-. ...+++++...++                       +.++| +++.+++|+-|++.++||+|
T Consensus       139 r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R  217 (343)
T KOG0286|consen  139 RELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR  217 (343)
T ss_pred             eeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeecc
Confidence            4555553 355555655 3345555444333                       33457 88999999999999999999


Q ss_pred             CCceEEEEeccc-eEEEEEecCCcEEEEeecC--------------------eeEEeeeEEEEEEcCCCEEEEecCCCcE
Q psy8891         127 AEEKVRDIELHG-KITSLDLSKGKYYFVFAEG--------------------FKVQCDFTRAVFVVDDDYVAVGSIDGNI  185 (203)
Q Consensus       127 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~s~s~d~~v  185 (203)
                      ++.+.++|+.|. .|+++.+.|+..-++....                    ....+.++.+.|+..|++|+.|-.|.++
T Consensus       218 ~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c  297 (343)
T KOG0286|consen  218 SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTC  297 (343)
T ss_pred             CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCce
Confidence            999999998874 5999999888776654322                    1123467788999999999999999999


Q ss_pred             EEEeCCCceeeeeeccC
Q psy8891         186 YVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       186 ~~wd~~~~~~~~~~~~~  202 (203)
                      .+||.-.++.+-.|.||
T Consensus       298 ~vWDtlk~e~vg~L~GH  314 (343)
T KOG0286|consen  298 NVWDTLKGERVGVLAGH  314 (343)
T ss_pred             eEeeccccceEEEeecc
Confidence            99999999999999887

>KOG0282|consensus

Probab=99.93  E-value=4.8e-25  Score=169.88  Aligned_cols=201  Identities=21%  Similarity=0.385  Sum_probs=152.4

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCC-CCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRS-TETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~-~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++|.| .+.+|+||+.|+.|+|||+-. ..+.  +. +...+..+.|++++..++|+|.|++||+||+++|+++..+..
T Consensus       219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~  298 (503)
T KOG0282|consen  219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL  298 (503)
T ss_pred             hhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec
Confidence            567888 888999999999999999976 3332  22 223344567899999999999999999999999999999988


Q ss_pred             CCeEEEEEecCCC-ceEEEecCCceEEE-----------------------EcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          77 HGKITSLDLSKGT-ETKFAGSSCNDLVT-----------------------YDGAGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        77 ~~~v~~~~~~~~~-~~~~~~~~~~~~~~-----------------------~~~~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      ...++++.++|+. ..+++|.....++.                       |-++|+.+++.+.|++++||+.+.+.+++
T Consensus       299 ~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik  378 (503)
T KOG0282|consen  299 DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK  378 (503)
T ss_pred             CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence            8889999999987 66777777665544                       45679999999999999999998776665


Q ss_pred             EEeccc--eEEEEEecCCcEEEEeec-----------------------CeeEEeeeEEEEEEcCCCEEEEecCCCcEEE
Q psy8891         133 DIELHG--KITSLDLSKGKYYFVFAE-----------------------GFKVQCDFTRAVFVVDDDYVAVGSIDGNIYV  187 (203)
Q Consensus       133 ~~~~~~--~v~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~  187 (203)
                      .+....  ...++.++++...++...                       |..+..-...+.|+|||++|++|..||.+.+
T Consensus       379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~  458 (503)
T KOG0282|consen  379 NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF  458 (503)
T ss_pred             hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE
Confidence            443221  123344444433332111                       1111222346779999999999999999999


Q ss_pred             EeCCCceeeeeeccC
Q psy8891         188 WDCNTEQVEAVLKDM  202 (203)
Q Consensus       188 wd~~~~~~~~~~~~~  202 (203)
                      ||.++-+++..++.|
T Consensus       459 wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  459 WDWKTTKLVSKLKAH  473 (503)
T ss_pred             eechhhhhhhccccC
Confidence            999999999998876

>KOG0265|consensus

Probab=99.93  E-value=1.3e-24  Score=158.92  Aligned_cols=160  Identities=27%  Similarity=0.418  Sum_probs=127.0

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---EEecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET---KFAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++.|+|+|..|+||+.|..|.+|++-....   ...++ ....-+.+.++++.|+|+|.|++++.||+++++.++.++.
T Consensus        51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~  130 (338)
T KOG0265|consen   51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG  130 (338)
T ss_pred             EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcc
Confidence            4689999999999999999999999754221   12222 2233456788999999999999999999999999988888


Q ss_pred             CCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEee
Q psy8891          77 HGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        77 ~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  155 (203)
                      |.. |.+++...-+                  -..+.|++.|+++|+||+|+.++++.++-+-+++++.+.         
T Consensus       131 h~~~vNs~~p~rrg------------------~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~---------  183 (338)
T KOG0265|consen  131 HTSFVNSLDPSRRG------------------PQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFK---------  183 (338)
T ss_pred             ccceeeecCccccC------------------CeEEEecCCCceEEEEeecccchhhccccceeEEEEEec---------
Confidence            765 4444432222                  137889999999999999999988888766666655543         


Q ss_pred             cCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                                     -++..+++|+-|+.|++||++.++...+++||
T Consensus       184 ---------------d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh  215 (338)
T KOG0265|consen  184 ---------------DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH  215 (338)
T ss_pred             ---------------ccccceeeccccCceeeeccccCcceEEeecc
Confidence                           35678999999999999999999999999987

>KOG0266|consensus

Probab=99.93  E-value=3.9e-24  Score=173.17  Aligned_cols=158  Identities=28%  Similarity=0.515  Sum_probs=126.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEEC-CCceEEEeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF-RAEEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~-~~~~~~~~~~   75 (203)
                      |+.|+++|..+++++.|+.+++|++...+  ..   ..+.....-++|+|+++++++++.|++|||||+ ..+..++++.
T Consensus       164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~  243 (456)
T KOG0266|consen  164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK  243 (456)
T ss_pred             EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec
Confidence            67999999999999999999999995543  21   112222445789999999999999999999999 4447778887


Q ss_pred             eC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEe
Q psy8891          76 LH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF  154 (203)
Q Consensus        76 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  154 (203)
                      .| ..|++++|+                   |+|+.+++|++|++||+||++++++.+.+..|..               
T Consensus       244 gH~~~v~~~~f~-------------------p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~---------------  289 (456)
T KOG0266|consen  244 GHSTYVTSVAFS-------------------PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD---------------  289 (456)
T ss_pred             CCCCceEEEEec-------------------CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC---------------
Confidence            66 446666555                   5667999999999999999999999988887642               


Q ss_pred             ecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce--eeeeecc
Q psy8891         155 AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ--VEAVLKD  201 (203)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~--~~~~~~~  201 (203)
                              .++.+.|.+++.+|++++.|++|++||+.+++  +++++.+
T Consensus       290 --------~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  330 (456)
T KOG0266|consen  290 --------GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG  330 (456)
T ss_pred             --------ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC
Confidence                    12345566899999999999999999999999  5666654

>KOG0273|consensus

Probab=99.92  E-value=2.3e-23  Score=160.38  Aligned_cols=200  Identities=21%  Similarity=0.345  Sum_probs=142.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK   79 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~   79 (203)
                      +++|+.+|..||||++||.+|+|+.......  ..+..+.-.+.|...|++|+|++.|+++-+||.-+++..+.++.+..
T Consensus       240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~  319 (524)
T KOG0273|consen  240 SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA  319 (524)
T ss_pred             eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence            6889999999999999999999999764432  22233344567889999999999999999999988887766666543


Q ss_pred             E-EEEEecCC-------Cc---------------eEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891          80 I-TSLDLSKG-------TE---------------TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        80 v-~~~~~~~~-------~~---------------~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      . ..+++-.+       .+               ++..+.....++.|+|.|..|+|+|+|++++||+.....+.+.+..
T Consensus       320 ~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~  399 (524)
T KOG0273|consen  320 PALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQA  399 (524)
T ss_pred             CccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhh
Confidence            3 22332211       11               1111222334678999999999999999999999887777666655


Q ss_pred             cc-eEEEEEecCCc--------E-EEEe------------ecC-----e-eEEeeeEEEEEEcCCCEEEEecCCCcEEEE
Q psy8891         137 HG-KITSLDLSKGK--------Y-YFVF------------AEG-----F-KVQCDFTRAVFVVDDDYVAVGSIDGNIYVW  188 (203)
Q Consensus       137 ~~-~v~~~~~~~~~--------~-~~~~------------~~~-----~-~~~~~~~~~~~~~~~~~l~s~s~d~~v~~w  188 (203)
                      |. .|..+.++|..        . .++.            ..+     + +++.++..+.|+|+++++++|+.||.|.+|
T Consensus       400 Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iw  479 (524)
T KOG0273|consen  400 HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIW  479 (524)
T ss_pred             hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEec
Confidence            54 23333333211        0 1110            111     1 234466788999999999999999999999


Q ss_pred             eCCCceeeeeecc
Q psy8891         189 DCNTEQVEAVLKD  201 (203)
Q Consensus       189 d~~~~~~~~~~~~  201 (203)
                      ++.++++.+.+.+
T Consensus       480 s~~~~~l~~s~~~  492 (524)
T KOG0273|consen  480 STKTGKLVKSYQG  492 (524)
T ss_pred             cccchheeEeecC
Confidence            9999999998864

>KOG0647|consensus

Probab=99.92  E-value=1.5e-23  Score=153.65  Aligned_cols=182  Identities=19%  Similarity=0.366  Sum_probs=127.8

Q ss_pred             ceEEcCCC-CEEEEEeCCCcEEEEeCCC-CCeE----EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           2 CAKFLGDP-TKVVSGSCDRTLKIWDLRS-TETK----FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~-~~~~----~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      +++|||.. .+++.||+|++||+|+++. +...    .....+.-.++|+.++..+++|+.|+.+++|||.+++....-.
T Consensus        32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~  111 (347)
T KOG0647|consen   32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA  111 (347)
T ss_pred             eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeee
Confidence            57899944 4566999999999999976 2221    2223334457899999999999999999999999997655444


Q ss_pred             eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCc------
Q psy8891          76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGK------  149 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~------  149 (203)
                      +.++|..+.+-+..                 ....|+|||||++||+||.|+.+++.++++++++.+.++-...      
T Consensus       112 Hd~pvkt~~wv~~~-----------------~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata  174 (347)
T KOG0647|consen  112 HDAPVKTCHWVPGM-----------------NYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATA  174 (347)
T ss_pred             cccceeEEEEecCC-----------------CcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEec
Confidence            55677777665422                 2247999999999999999998888887776655443221100      


Q ss_pred             --------------------------------------EEEEeecC---------------eeE------------Eeee
Q psy8891         150 --------------------------------------YYFVFAEG---------------FKV------------QCDF  164 (203)
Q Consensus       150 --------------------------------------~~~~~~~~---------------~~~------------~~~~  164 (203)
                                                            +.+-.-+|               +.+            .+.+
T Consensus       175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV  254 (347)
T ss_pred             CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence                                                  00000011               111            1223


Q ss_pred             EEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         165 TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       165 ~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ..++|+|.-..|+|++.||+..+||.+..+.+++.+
T Consensus       255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~  290 (347)
T KOG0647|consen  255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE  290 (347)
T ss_pred             cceEeecccceEEEecCCceEEEecchhhhhhhccC
Confidence            456788988999999999999999988777776654

>KOG0281|consensus

Probab=99.92  E-value=5.8e-25  Score=164.09  Aligned_cols=168  Identities=27%  Similarity=0.389  Sum_probs=118.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEEEEE
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLD   84 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~~~~   84 (203)
                      -|...+++|..|+||++||..+..+... ..+...+++..-+.+.++|||.|.+|+|||++++++++++-+| ..|..+-
T Consensus       205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr  284 (499)
T KOG0281|consen  205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR  284 (499)
T ss_pred             ecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence            3677899999999999999987554322 1222355777778889999999999999999999998887666 4465555


Q ss_pred             ecCCCceEEEecCCceEEEEc------------------------CCCCEEEEeeCCCeEEEEECCCCceEEEEeccce-
Q psy8891          85 LSKGTETKFAGSSCNDLVTYD------------------------GAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-  139 (203)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~-  139 (203)
                      |+.  ..+++.+....+..|+                        .+.++|+++|.|++|++|++.+.+.++.+..|.. 
T Consensus       285 f~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRG  362 (499)
T KOG0281|consen  285 FSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG  362 (499)
T ss_pred             EeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhccccc
Confidence            543  2333333333333332                        3456888888888888888888887776655422 


Q ss_pred             EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         140 ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       140 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      |-+                        +.  -.++++++||+|.+||+||.+.|.+++.++||
T Consensus       363 IAC------------------------lQ--Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGH  399 (499)
T KOG0281|consen  363 IAC------------------------LQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGH  399 (499)
T ss_pred             cee------------------------hh--ccCeEEEecCCCceEEEEeccccHHHHHHhch
Confidence            111                        11  14677888888888888888888888888776

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=9.2e-23  Score=165.48  Aligned_cols=180  Identities=22%  Similarity=0.318  Sum_probs=124.5

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCC-------e--EEec-CcCceEEEEeCCC-CEEEEecCCCeEEEEECCCce
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTE-------T--KFAG-SSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~-------~--~~~~-~~~~~~~~~~~~~-~~l~s~~~D~~i~vwd~~~~~   69 (203)
                      +++|+| ++.+|+|||.|++|++||+....       .  .+.+ ......+.|+|++ ++|+||+.|++|+|||+++++
T Consensus        80 ~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~  159 (493)
T PTZ00421         80 DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK  159 (493)
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence            689999 88999999999999999997531       1  1222 2234556788864 699999999999999999988


Q ss_pred             EEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce--EEEEEec
Q psy8891          70 KVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK--ITSLDLS  146 (203)
Q Consensus        70 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~--v~~~~~~  146 (203)
                      .+..+..| ..|.+++                   |+|+|.+|++++.|++|++||+++++.+..+..+..  ...+.+.
T Consensus       160 ~~~~l~~h~~~V~sla-------------------~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~  220 (493)
T PTZ00421        160 AVEVIKCHSDQITSLE-------------------WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA  220 (493)
T ss_pred             EEEEEcCCCCceEEEE-------------------EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence            77766544 3466555                   455677999999999999999999988777765532  1122222


Q ss_pred             CC-cEEEEeec-----C----------e-eEE-------eeeEEEEEEcCCCEEEEec-CCCcEEEEeCCCceeeeeec
Q psy8891         147 KG-KYYFVFAE-----G----------F-KVQ-------CDFTRAVFVVDDDYVAVGS-IDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       147 ~~-~~~~~~~~-----~----------~-~~~-------~~~~~~~~~~~~~~l~s~s-~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ++ ..++....     +          . ...       .......|++++.+|++|+ .|++|++||+..++++..++
T Consensus       221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        221 KRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            22 12221110     0          0 000       0112234678889998887 59999999999998877654

>KOG0316|consensus

Probab=99.92  E-value=1.5e-23  Score=149.12  Aligned_cols=182  Identities=19%  Similarity=0.354  Sum_probs=135.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceE--EEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDL--VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~--~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      +++|.-||++.+|++.|++||+|+...+..+.. ..+...+  ++...|+..++|||-|+.+.+||+.+++.++.+..| 
T Consensus        22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~  101 (307)
T KOG0316|consen   22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHL  101 (307)
T ss_pred             EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccc
Confidence            689999999999999999999999877665422 2222233  344567789999999999999999999999999877 


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC--ceEEEEec-cceEEEEEecCCcE----
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE--EKVRDIEL-HGKITSLDLSKGKY----  150 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~--~~~~~~~~-~~~v~~~~~~~~~~----  150 (203)
                      ++|+.+.|+.                   +...+++|+.|.++|+||.|+.  +|++.+.. ...|.++.+.....    
T Consensus       102 aqVNtV~fNe-------------------esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS  162 (307)
T KOG0316|consen  102 AQVNTVRFNE-------------------ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGS  162 (307)
T ss_pred             ceeeEEEecC-------------------cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeec
Confidence            5688777665                   4458999999999999999854  45544422 23355544443222    


Q ss_pred             ------EEEeecCee----EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         151 ------YFVFAEGFK----VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       151 ------~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                            .+..+.|..    +..+++++.|+++++....++.|+++|+-|..+|++++.++||
T Consensus       163 ~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh  224 (307)
T KOG0316|consen  163 VDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH  224 (307)
T ss_pred             cCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence                  222222211    1235678889999999999999999999999999999999987

>KOG0263|consensus

Probab=99.92  E-value=3.9e-24  Score=172.98  Aligned_cols=149  Identities=26%  Similarity=0.474  Sum_probs=122.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eEEecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TKFAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      .|+|+|-|-++||||.|++.++|......  ..+.++ .-.+++.|.|+.+++++||.|.++|+||+.++..++.+.+| 
T Consensus       498 dV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~  577 (707)
T KOG0263|consen  498 DVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK  577 (707)
T ss_pred             eEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC
Confidence            48899999999999999999999987633  234333 33567889999999999999999999999999998888766 


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecC
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEG  157 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  157 (203)
                      ++|.+++                   |+|+|++|++|+.|+.|++||+.+++.+..+..|..                  
T Consensus       578 ~~V~al~-------------------~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~------------------  620 (707)
T KOG0263|consen  578 GPVTALA-------------------FSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG------------------  620 (707)
T ss_pred             CceEEEE-------------------EcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC------------------
Confidence            5676655                   556788999999999999999999988776655421                  


Q ss_pred             eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         158 FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                           .+..+.|+.+|..||+|+.|.+|++||+..
T Consensus       621 -----ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  621 -----TIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             -----ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence                 123345678999999999999999999764

>KOG0296|consensus

Probab=99.92  E-value=2.6e-22  Score=150.33  Aligned_cols=200  Identities=17%  Similarity=0.287  Sum_probs=147.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-C
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-H   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-~   77 (203)
                      +|+.+|+..+++||+.|....+|++.+++......   ..+..+.|+.++.+|+||+.+|.|+||+..++.....+.. -
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~  148 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV  148 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence            68889999999999999999999999877443322   2234467889999999999999999999999887776653 3


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEE-----------------------EcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVT-----------------------YDGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                      +.+..+.++|....+++|+..+.+.+                       |.|+|+.++++..|++|++||+.+++++..+
T Consensus       149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~  228 (399)
T KOG0296|consen  149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI  228 (399)
T ss_pred             CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe
Confidence            56888999998888888887766544                       4578999999999999999999999988776


Q ss_pred             ecc--ceEEEEEec---------------------CCcEEEEee------------------------------cC----
Q psy8891         135 ELH--GKITSLDLS---------------------KGKYYFVFA------------------------------EG----  157 (203)
Q Consensus       135 ~~~--~~v~~~~~~---------------------~~~~~~~~~------------------------------~~----  157 (203)
                      ...  .....++++                     .++.+....                              .+    
T Consensus       229 ~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG  308 (399)
T KOG0296|consen  229 TQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG  308 (399)
T ss_pred             cccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc
Confidence            511  001111110                     001010000                              00    


Q ss_pred             -----------eeE----EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         158 -----------FKV----QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       158 -----------~~~----~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                                 +++    ...++++.+.+ ..+|++++.||+|++||.++|+++.++.||
T Consensus       309 ~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH  367 (399)
T KOG0296|consen  309 TIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH  367 (399)
T ss_pred             eEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence                       011    11345666665 689999999999999999999999999988

>KOG0286|consensus

Probab=99.91  E-value=6.4e-23  Score=149.79  Aligned_cols=168  Identities=27%  Similarity=0.477  Sum_probs=128.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcC-ceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSC-NDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~-~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      ||+|.+ ...|+|||.|.+..+||+++++..  +.++.. ...+.++| +++.++||+.|++.++||+|.+.+.+++..|
T Consensus       150 cC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh  228 (343)
T KOG0286|consen  150 CCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH  228 (343)
T ss_pred             EEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence            677876 577999999999999999987643  333322 23345677 8999999999999999999999999888876


Q ss_pred             C-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc---ceEEEEEecCCcEEEE
Q psy8891          78 G-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH---GKITSLDLSKGKYYFV  153 (203)
Q Consensus        78 ~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~  153 (203)
                      . .|.++.|.|                   +|.-+++|+.|+++|++|+|+++.+..++..   ..+++++++....++.
T Consensus       229 esDINsv~ffP-------------------~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLf  289 (343)
T KOG0286|consen  229 ESDINSVRFFP-------------------SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLF  289 (343)
T ss_pred             ccccceEEEcc-------------------CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEE
Confidence            4 466665555                   5668999999999999999998877766543   4588998887654443


Q ss_pred             ee-cCe-----------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         154 FA-EGF-----------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       154 ~~-~~~-----------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      .. ..+                 .+.-.++++..+|||.-++|||.|.++|||.
T Consensus       290 agy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  290 AGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            32 111                 1112456777889999999999999999994

>KOG1407|consensus

Probab=99.91  E-value=4.7e-23  Score=148.42  Aligned_cols=181  Identities=24%  Similarity=0.416  Sum_probs=139.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----EecCc-C-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----FAGSS-C-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~~~~~-~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      +|+|..+|..|++||.|+++++|+++.....    ..++. . ..++...+++..+++++.|++|++||++.++++..+.
T Consensus        25 Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~  104 (313)
T KOG1407|consen   25 SVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE  104 (313)
T ss_pred             EEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee
Confidence            6899999999999999999999999764321    11221 2 3334455678899999999999999999999987765


Q ss_pred             eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEee
Q psy8891          76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  155 (203)
                      ..++                   +..+.|+|+|.+++.++.|..|.+.|.++.+...+.++...++.+.+....-+|...
T Consensus       105 ~~~e-------------------ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen  105 TKGE-------------------NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             ccCc-------------------ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEe
Confidence            4332                   335779999999999999999999999999888888777777777776544444333


Q ss_pred             cCee------------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         156 EGFK------------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       156 ~~~~------------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      .|..                  +.....++.|+|+|++|++|+.|..+-+||++.--+++.+..
T Consensus       166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR  229 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR  229 (313)
T ss_pred             cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc
Confidence            3311                  112345677999999999999999999999998777777653

>KOG0278|consensus

Probab=99.91  E-value=6.4e-24  Score=152.23  Aligned_cols=175  Identities=25%  Similarity=0.441  Sum_probs=139.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---EecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +|+|+.|...|+||+.+.-+|++|++.++..   +.++ ....-+-|-..++.++|+.+|++||+||.+++..++++...
T Consensus       105 ~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~  184 (334)
T KOG0278|consen  105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN  184 (334)
T ss_pred             eEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC
Confidence            6899999999999999999999999875432   2222 22233445556679999999999999999999999999988


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecC
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEG  157 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  157 (203)
                      .+|.++++++++.                    +++-++.+.|++||..+-.+++...++..|.+.+++|..-.++....
T Consensus       185 s~VtSlEvs~dG~--------------------ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGge  244 (334)
T KOG0278|consen  185 SPVTSLEVSQDGR--------------------ILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGE  244 (334)
T ss_pred             CCCcceeeccCCC--------------------EEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCc
Confidence            8898888876543                    55666788999999999999999999999999999998766654321


Q ss_pred             -e------------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         158 -F------------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       158 -~------------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                       +                  .....+-++.|+|+|...++||+||+||||.+..++.-
T Consensus       245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence             1                  11234567889999999999999999999998766543

>KOG0319|consensus

Probab=99.91  E-value=1.9e-23  Score=168.15  Aligned_cols=159  Identities=23%  Similarity=0.318  Sum_probs=129.6

Q ss_pred             ceEEcCCC-CEEEEEeCCCcEEEEeCCCCC-----eEE-------ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc
Q psy8891           2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTE-----TKF-------AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~-----~~~-------~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~   68 (203)
                      +++++..+ ..|+|+|.|.++|+|++...+     ..+       .+....+.++++|++++++|||.|+++|||++.+.
T Consensus       416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~  495 (775)
T KOG0319|consen  416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL  495 (775)
T ss_pred             eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence            45666544 478999999999999997511     111       12233456889999999999999999999999988


Q ss_pred             eEEEeeeeCC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecC
Q psy8891          69 EKVRDIELHG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK  147 (203)
Q Consensus        69 ~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~  147 (203)
                      ....++.+|- .|.++.|+|                   ..+.++|+|.|++||||.+.+..|+++++.|..        
T Consensus       496 ~l~~vLsGH~RGvw~V~Fs~-------------------~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~--------  548 (775)
T KOG0319|consen  496 RLLGVLSGHTRGVWCVSFSK-------------------NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS--------  548 (775)
T ss_pred             eEEEEeeCCccceEEEEecc-------------------ccceeEeccCCceEEEEEeccceeeeeecCccc--------
Confidence            8888988874 477776665                   456899999999999999999999999987642        


Q ss_pred             CcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         148 GKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                                     .+.++.|.-++++|+||+.||-+++|++++++|+.+|-+|
T Consensus       549 ---------------aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  549 ---------------AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             ---------------eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence                           2446677778999999999999999999999999999766

>KOG0276|consensus

Probab=99.91  E-value=1.1e-23  Score=167.20  Aligned_cols=159  Identities=24%  Similarity=0.433  Sum_probs=128.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCC---CCeEEecCcC-ceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSC-NDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~---~~~~~~~~~~-~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      |++-+|..-.++|+|.|-+||+||.+.   .+..+.++.+ ...+++.| |++.++|++.|++||||.+.+..+..+++.
T Consensus       102 ~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g  181 (794)
T KOG0276|consen  102 SIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG  181 (794)
T ss_pred             eeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec
Confidence            566688888999999999999999986   2334555544 45566655 778999999999999999999999889887


Q ss_pred             CC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEee
Q psy8891          77 HG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        77 ~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  155 (203)
                      |. .|+++++-+.+                 |..+|+||++|.+|++||.++..|+++++.|.+                
T Consensus       182 HekGVN~Vdyy~~g-----------------dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~----------------  228 (794)
T KOG0276|consen  182 HEKGVNCVDYYTGG-----------------DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN----------------  228 (794)
T ss_pred             cccCcceEEeccCC-----------------CcceEEecCCCceEEEeecchHHHHHHhhcccc----------------
Confidence            75 48888776543                 346999999999999999999999988876643                


Q ss_pred             cCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                             ++..+.|.|.=..++|||+||+||||+..+.++++++.
T Consensus       229 -------Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn  266 (794)
T KOG0276|consen  229 -------NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN  266 (794)
T ss_pred             -------cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence                   23345566676789999999999999999988888763

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=4.6e-22  Score=162.69  Aligned_cols=162  Identities=18%  Similarity=0.326  Sum_probs=116.3

Q ss_pred             CceEEcCC-CCEEEEEeCCCcEEEEeCCCCCe----------EEe-cCcCceEEEEeCCCCE-EEEecCCCeEEEEECCC
Q psy8891           1 MCAKFLGD-PTKVVSGSCDRTLKIWDLRSTET----------KFA-GSSCNDLVTYDGAGTT-IISGHFDKKVRFWDFRA   67 (203)
Q Consensus         1 ~~~~~~~~-~~~l~t~s~D~~v~lwdl~~~~~----------~~~-~~~~~~~~~~~~~~~~-l~s~~~D~~i~vwd~~~   67 (203)
                      ++++|+|+ +.+|+|||.|++|++||+.+...          .+. +......+.|+|++.. |+|++.|++|+|||++.
T Consensus        78 ~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t  157 (568)
T PTZ00420         78 LDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN  157 (568)
T ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence            36899997 78999999999999999975311          112 2223455788887765 57999999999999999


Q ss_pred             ceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecC
Q psy8891          68 EEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK  147 (203)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~  147 (203)
                      ++....+..+..|.+++                   |+++|.+|++++.|++|++||+++++.+.++..|.....     
T Consensus       158 g~~~~~i~~~~~V~Sls-------------------wspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~-----  213 (568)
T PTZ00420        158 EKRAFQINMPKKLSSLK-------------------WNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN-----  213 (568)
T ss_pred             CcEEEEEecCCcEEEEE-------------------ECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce-----
Confidence            88766655445565554                   555777999999999999999999988776655432100     


Q ss_pred             CcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC----cEEEEeCCC-ceeeeee
Q psy8891         148 GKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG----NIYVWDCNT-EQVEAVL  199 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~----~v~~wd~~~-~~~~~~~  199 (203)
                                   ...+....|++++++|++++.|+    .|+|||++. ++++.++
T Consensus       214 -------------s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~  257 (568)
T PTZ00420        214 -------------TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM  257 (568)
T ss_pred             -------------eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence                         00111223457888999988764    799999984 6676654

>KOG0284|consensus

Probab=99.91  E-value=4.8e-24  Score=161.58  Aligned_cols=182  Identities=19%  Similarity=0.269  Sum_probs=123.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC---eEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE---TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      .|+|.|+|++|+||+..|...||+..+..   ++..+...+..+.|++++..++||+.+|.||+|+....-....-..| 
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~  180 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHA  180 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhh
Confidence            58999999999999999999999985422   12233344556789999999999999999999997654322112233 


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce-EEEEEecCCcEEEEeec
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFVFAE  156 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~  156 (203)
                      .+|++++|+|...                   .++++|.|++|+|||.+.......+..|+. ++++++++...++++..
T Consensus       181 eaIRdlafSpnDs-------------------kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgs  241 (464)
T KOG0284|consen  181 EAIRDLAFSPNDS-------------------KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGS  241 (464)
T ss_pred             hhhheeccCCCCc-------------------eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEcc
Confidence            6788888887544                   455555555555555554444444444432 55555554443333221


Q ss_pred             Ce------------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         157 GF------------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       157 ~~------------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      .-                  .+.-.+..+.|.+++.+|+|+|.|..++++|.++-+-+.++++|
T Consensus       242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H  305 (464)
T KOG0284|consen  242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH  305 (464)
T ss_pred             CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc
Confidence            10                  11123556778899999999999999999999987777777765

>KOG0265|consensus

Probab=99.91  E-value=2.4e-22  Score=147.16  Aligned_cols=184  Identities=21%  Similarity=0.410  Sum_probs=130.4

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCceEEE-EeC---CCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVT-YDG---AGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~-~~~---~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      |-+.|.+|+..++|+|.|.+|+.||.++++.......+...+. ..|   ...+|.|++.|+++|+||+|+.+.+++++.
T Consensus        94 M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~  173 (338)
T KOG0265|consen   94 MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN  173 (338)
T ss_pred             EeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc
Confidence            3478999999999999999999999999887544333322221 122   345889999999999999999998888766


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEee
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~  155 (203)
                      .-+++++.|..                   ++.++.+|+-|+.|++||++.+.....+..+ ..|+.+.+++....+...
T Consensus       174 kyqltAv~f~d-------------------~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsn  234 (338)
T KOG0265|consen  174 KYQLTAVGFKD-------------------TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSN  234 (338)
T ss_pred             ceeEEEEEecc-------------------cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccc
Confidence            66677766655                   4446677777777777777766666665554 335555554433222111


Q ss_pred             cC--------------------------eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         156 EG--------------------------FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       156 ~~--------------------------~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                      .+                          ..+-.+..++..+|++.++..|+.|+.+++||.....++..++||.
T Consensus       235 sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~  308 (338)
T KOG0265|consen  235 SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY  308 (338)
T ss_pred             cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc
Confidence            10                          0111234566778999999999999999999999999999999873

>KOG0310|consensus

Probab=99.90  E-value=5.3e-22  Score=153.33  Aligned_cols=182  Identities=21%  Similarity=0.344  Sum_probs=137.8

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCC---eEEecCcCceEEEEeCC-CCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE---TKFAGSSCNDLVTYDGA-GTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~---~~~~~~~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++.|..||+.|+.|.+.|.|+++|+.+..   ....+..+...+.|.|+ +..+++|++|+.+++||+.+...+.++..
T Consensus        72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~  151 (487)
T KOG0310|consen   72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG  151 (487)
T ss_pred             eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC
Confidence            468899999999999999999999965411   12233444455666664 45889999999999999988776445555


Q ss_pred             C-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEeccceEEEEEecCCcEEEEe
Q psy8891          77 H-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDIELHGKITSLDLSKGKYYFVF  154 (203)
Q Consensus        77 ~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~  154 (203)
                      | ..|++.++.|-                  +++.++|||+||+||+||.++. ..+.++....+|..+..-++..+++.
T Consensus       152 htDYVR~g~~~~~------------------~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ias  213 (487)
T KOG0310|consen  152 HTDYVRCGDISPA------------------NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIAS  213 (487)
T ss_pred             CcceeEeeccccC------------------CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEE
Confidence            4 45888777663                  3458999999999999999976 55666666667777766665555544


Q ss_pred             ecCe------------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         155 AEGF------------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       155 ~~~~------------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +.|.                  .++..++++++..++..|+||+.|+.|++||+...+.+..++
T Consensus       214 AgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~  277 (487)
T KOG0310|consen  214 AGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK  277 (487)
T ss_pred             cCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence            4332                  245567888898899999999999999999998888888764

>KOG0318|consensus

Probab=99.90  E-value=6.8e-21  Score=148.64  Aligned_cols=203  Identities=20%  Similarity=0.356  Sum_probs=142.2

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e----cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A----GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~----~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      .||||+|||.+++|+|.||+|.+||=.+++...  .    +....-.+.|+||+..++|+|.|.++||||+.+.++++++
T Consensus       194 ~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  194 NCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             eeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence            489999999999999999999999988876432  1    1122345679999999999999999999999877766654


Q ss_pred             ee-------------------------------------------C-CeEEEEEecCCCceEEEecCCceE---------
Q psy8891          75 EL-------------------------------------------H-GKITSLDLSKGTETKFAGSSCNDL---------  101 (203)
Q Consensus        75 ~~-------------------------------------------~-~~v~~~~~~~~~~~~~~~~~~~~~---------  101 (203)
                      ..                                           | ..|+++..++++.+++.++..+.+         
T Consensus       274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~  353 (603)
T KOG0318|consen  274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT  353 (603)
T ss_pred             ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence            21                                           1 136667777766655543322111         


Q ss_pred             --------------------------------------------------------------------------------
Q psy8891         102 --------------------------------------------------------------------------------  101 (203)
Q Consensus       102 --------------------------------------------------------------------------------  101 (203)
                                                                                                      
T Consensus       354 ~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~  433 (603)
T KOG0318|consen  354 SDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQD  433 (603)
T ss_pred             ccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEec
Confidence                                                                                            


Q ss_pred             ---------------EEEcCCCCEEEEeeCCCeEEEEECCCCceE---EEEeccceEEEEEecCCcEEEEeecCee----
Q psy8891         102 ---------------VTYDGAGTTIISGHFDKKVRFWDFRAEEKV---RDIELHGKITSLDLSKGKYYFVFAEGFK----  159 (203)
Q Consensus       102 ---------------~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~----  159 (203)
                                     ++.+|++..++.|+.|++|+++.+..++..   +..+..+.++.++.+++..+++.....+    
T Consensus       434 ~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~  513 (603)
T KOG0318|consen  434 QTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVL  513 (603)
T ss_pred             CCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEE
Confidence                           124456667777777777777776654422   2233446688888888877776543211    


Q ss_pred             ---------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         160 ---------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       160 ---------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                                     +...+.+++.+|++.++||||.|.+|.||+++...-.-.++++|
T Consensus       514 yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH  572 (603)
T KOG0318|consen  514 YDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH  572 (603)
T ss_pred             EEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence                           12244567788999999999999999999998766666667776

>KOG0283|consensus

Probab=99.90  E-value=2.5e-21  Score=157.82  Aligned_cols=190  Identities=22%  Similarity=0.404  Sum_probs=137.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC----------------------------e-EE--------ec---------
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE----------------------------T-KF--------AG---------   35 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~----------------------------~-~~--------~~---------   35 (203)
                      |+.||+||++|||||.|+.||||.+...+                            . ..        ..         
T Consensus       272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p  351 (712)
T KOG0283|consen  272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP  351 (712)
T ss_pred             EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence            68899999999999999999999864400                            0 00        00         


Q ss_pred             ---------------CcCceEE--EEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecC-CCceEEEecC
Q psy8891          36 ---------------SSCNDLV--TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK-GTETKFAGSS   97 (203)
Q Consensus        36 ---------------~~~~~~~--~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~   97 (203)
                                     .+..+++  .|+. +++|+|+|+|+|+|+|++...+++..+.+..-|++++|+| |...++.|+.
T Consensus       352 ~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL  430 (712)
T KOG0283|consen  352 LKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL  430 (712)
T ss_pred             Cccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc
Confidence                           0011222  2333 4699999999999999999999999999889999999999 4555666665


Q ss_pred             Cc----------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec---------cceEEEEEec
Q psy8891          98 CN----------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL---------HGKITSLDLS  146 (203)
Q Consensus        98 ~~----------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~---------~~~v~~~~~~  146 (203)
                      .+                      +.++|.|+|+..+.|+++|.+++++...-+....+..         +.+|+++.+.
T Consensus       431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~  510 (712)
T KOG0283|consen  431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF  510 (712)
T ss_pred             ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec
Confidence            43                      2468999999999999999999999886555433322         1358888876


Q ss_pred             CCcE--EEEeecCe--eE-----------------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         147 KGKY--YFVFAEGF--KV-----------------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       147 ~~~~--~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      +...  +++.....  ++                 ...-.++.|..||++++++++|..|++|+...
T Consensus       511 p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  511 PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            5432  44332221  11                 11235677889999999999999999999754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=2.4e-21  Score=166.77  Aligned_cols=159  Identities=20%  Similarity=0.346  Sum_probs=117.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC----------eEEecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE----------TKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEK   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~----------~~~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~   70 (203)
                      +++|+|++++++||+.|++|++||+....          ...........+.|.+ ++..|++++.|++|++||+.+++.
T Consensus       488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~  567 (793)
T PLN00181        488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL  567 (793)
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            58899999999999999999999985311          0111112223345554 467999999999999999999888


Q ss_pred             EEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCc
Q psy8891          71 VRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGK  149 (203)
Q Consensus        71 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~  149 (203)
                      +..+..| +.|.++++++.                  ++.+|++++.|++|++||++++.++..+..+..+.+       
T Consensus       568 ~~~~~~H~~~V~~l~~~p~------------------~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~-------  622 (793)
T PLN00181        568 VTEMKEHEKRVWSIDYSSA------------------DPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICC-------  622 (793)
T ss_pred             EEEecCCCCCEEEEEEcCC------------------CCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEE-------
Confidence            7777655 45877777642                  456899999999999999998887766654333332       


Q ss_pred             EEEEeecCeeEEeeeEEEEEE-cCCCEEEEecCCCcEEEEeCCCce-eeeeeccC
Q psy8891         150 YYFVFAEGFKVQCDFTRAVFV-VDDDYVAVGSIDGNIYVWDCNTEQ-VEAVLKDM  202 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~v~~wd~~~~~-~~~~~~~~  202 (203)
                                       +.|. +++.+|++|+.|+.|++||+++++ ++.++.+|
T Consensus       623 -----------------v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h  660 (793)
T PLN00181        623 -----------------VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH  660 (793)
T ss_pred             -----------------EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC
Confidence                             2332 467899999999999999998765 45566554

>KOG0278|consensus

Probab=99.89  E-value=1.1e-23  Score=151.12  Aligned_cols=182  Identities=25%  Similarity=0.426  Sum_probs=144.9

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce-EEEeeeeC-C
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH-G   78 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~~-~   78 (203)
                      +.+..+..+.+|+++|.+.|+||..++..+  +.+.+.+..++|+.|.++|++||.++.+||||++.++ +..++..| +
T Consensus        65 ~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg  144 (334)
T KOG0278|consen   65 ATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG  144 (334)
T ss_pred             eecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence            344567778899999999999998875432  3333445668899999999999999999999998765 45566554 4


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCe
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGF  158 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  158 (203)
                      .|+.+.|+.                   ..++|+|.++|++||+||.+++.-.+.++++.+++++.++.+.-++....+.
T Consensus       145 ~Ir~v~wc~-------------------eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gs  205 (334)
T KOG0278|consen  145 GIRTVLWCH-------------------EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGS  205 (334)
T ss_pred             cceeEEEec-------------------cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCc
Confidence            566655543                   3357889999999999999999999999999999999998876555544332


Q ss_pred             ----------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee-ccCC
Q psy8891         159 ----------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL-KDMH  203 (203)
Q Consensus       159 ----------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~-~~~~  203 (203)
                                      ...+.+..+.+.|+..+|++|++|..++.||.++|+-+..+ ||||
T Consensus       206 sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~  267 (334)
T KOG0278|consen  206 SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHF  267 (334)
T ss_pred             eeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCC
Confidence                            23456677778999999999999999999999999999986 8886

>KOG0640|consensus

Probab=99.89  E-value=1.8e-22  Score=148.89  Aligned_cols=179  Identities=22%  Similarity=0.378  Sum_probs=135.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCC------CCeEE---------------ecCcCceEEEEeCCCCEEEEecCCCeE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRS------TETKF---------------AGSSCNDLVTYDGAGTTIISGHFDKKV   60 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~------~~~~~---------------~~~~~~~~~~~~~~~~~l~s~~~D~~i   60 (203)
                      +.+|+|||..++|||.|.+|||.|++.      .+...               .+......+.|.|....|+||+.|++|
T Consensus       117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tv  196 (430)
T KOG0640|consen  117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTV  196 (430)
T ss_pred             eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeE
Confidence            678999999999999999999999862      11000               011112335678888999999999999


Q ss_pred             EEEECCCceE---EEeeeeCCeEEEEEecCCCceEEEecCCc--------------------------eEEEEcCCCCEE
Q psy8891          61 RFWDFRAEEK---VRDIELHGKITSLDLSKGTETKFAGSSCN--------------------------DLVTYDGAGTTI  111 (203)
Q Consensus        61 ~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~l  111 (203)
                      |++|+.....   .+.+....+|+++.|+|.++.++.|..-.                          +.+.|++.|+.-
T Consensus       197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY  276 (430)
T KOG0640|consen  197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY  276 (430)
T ss_pred             EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence            9999976532   23344456899999999999887654322                          124578889999


Q ss_pred             EEeeCCCeEEEEECCCCceEEEEec-cceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         112 ISGHFDKKVRFWDFRAEEKVRDIEL-HGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       112 ~s~s~d~~i~iWd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      +++|.||.|++||--+++|+.++.- |+..                      .+..+.|.-+++|+.+.+.|..|++|.+
T Consensus       277 vTaSkDG~IklwDGVS~rCv~t~~~AH~gs----------------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi  334 (430)
T KOG0640|consen  277 VTASKDGAIKLWDGVSNRCVRTIGNAHGGS----------------------EVCSAVFTKNGKYILSSGKDSTVKLWEI  334 (430)
T ss_pred             EEeccCCcEEeeccccHHHHHHHHhhcCCc----------------------eeeeEEEccCCeEEeecCCcceeeeeee
Confidence            9999999999999888888876642 2210                      1223446668999999999999999999


Q ss_pred             CCceeeeeeccC
Q psy8891         191 NTEQVEAVLKDM  202 (203)
Q Consensus       191 ~~~~~~~~~~~~  202 (203)
                      .+|++++++-|+
T Consensus       335 ~t~R~l~~YtGA  346 (430)
T KOG0640|consen  335 STGRMLKEYTGA  346 (430)
T ss_pred             cCCceEEEEecC
Confidence            999999988654

>KOG0284|consensus

Probab=99.89  E-value=1e-22  Score=154.40  Aligned_cols=183  Identities=22%  Similarity=0.318  Sum_probs=117.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-E-ecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-F-AGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~-~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      ++.|++++.+++||+.+|.||.|+..-...+ . .+. .....++++|++..++|||.||+|+|||....+....++.|+
T Consensus       143 ~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg  222 (464)
T KOG0284|consen  143 TMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG  222 (464)
T ss_pred             eEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC
Confidence            5789999999999999999999998643321 1 111 234457889999999999999999999999888878888876


Q ss_pred             e-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-----------eEEEEEec
Q psy8891          79 K-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-----------KITSLDLS  146 (203)
Q Consensus        79 ~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-----------~v~~~~~~  146 (203)
                      . |.+++++|...                   .|+++|.|..|++||.++++++.++..|.           .-.-++.+
T Consensus       223 wdVksvdWHP~kg-------------------LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s  283 (464)
T KOG0284|consen  223 WDVKSVDWHPTKG-------------------LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS  283 (464)
T ss_pred             CCcceeccCCccc-------------------eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc
Confidence            4 88888777544                   55555555555555555555432221110           00111122


Q ss_pred             CCcEEEE--eecC---e---eEEeeeEEEEEEc-CCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         147 KGKYYFV--FAEG---F---KVQCDFTRAVFVV-DDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       147 ~~~~~~~--~~~~---~---~~~~~~~~~~~~~-~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                      .+...-+  .+.+   +   .+...++++..+| ....|.+|+.||.|..|.+...+++..++-+|
T Consensus       284 kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH  349 (464)
T KOG0284|consen  284 KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH  349 (464)
T ss_pred             CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccc
Confidence            2211111  0100   0   0112333444445 34689999999999999999778887776554

>KOG0645|consensus

Probab=99.89  E-value=2.4e-20  Score=135.12  Aligned_cols=165  Identities=18%  Similarity=0.263  Sum_probs=116.0

Q ss_pred             ceEEcCC-CCEEEEEeCCCcEEEEeCCCCC---eEE----ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc--eEE
Q psy8891           2 CAKFLGD-PTKVVSGSCDRTLKIWDLRSTE---TKF----AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE--EKV   71 (203)
Q Consensus         2 ~~~~~~~-~~~l~t~s~D~~v~lwdl~~~~---~~~----~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~--~~~   71 (203)
                      .++|+|- |..|+|||.|+.||+|++..+.   ++.    .+......++|+|.+++|+++|.|.++-||.-.++  +++
T Consensus        19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv   98 (312)
T KOG0645|consen   19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV   98 (312)
T ss_pred             EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE
Confidence            4788887 8899999999999999998532   221    12233456889999999999999999999986654  567


Q ss_pred             EeeeeC-CeEEEEEecCCCceEEEecCCce--------------------------EEEEcCCCCEEEEeeCCCeEEEEE
Q psy8891          72 RDIELH-GKITSLDLSKGTETKFAGSSCND--------------------------LVTYDGAGTTIISGHFDKKVRFWD  124 (203)
Q Consensus        72 ~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~l~s~s~d~~i~iWd  124 (203)
                      .++++| .+|.++++++++..+.+.+....                          .+.|.|....|+|+|+|.+|++|.
T Consensus        99 ~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~  178 (312)
T KOG0645|consen   99 ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYR  178 (312)
T ss_pred             eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEe
Confidence            788776 56999998888777665544322                          145777777888888888888876


Q ss_pred             CC---CCceEEEEeccc-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         125 FR---AEEKVRDIELHG-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       125 ~~---~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      -.   ..++..++..+. .+-                        ...|.+.|..|++++.|++|+||.+
T Consensus       179 ~~~dddW~c~~tl~g~~~TVW------------------------~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  179 DEDDDDWECVQTLDGHENTVW------------------------SLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             ecCCCCeeEEEEecCccceEE------------------------EEEecCCCceEEEecCCcceEeeee
Confidence            54   223444444432 233                        3445566667777777777777763

>KOG0643|consensus

Probab=99.88  E-value=8.1e-21  Score=137.40  Aligned_cols=175  Identities=21%  Similarity=0.293  Sum_probs=137.8

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK   79 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~   79 (203)
                      +.|+.+|.+|+|++.|.++.+|--..++.+-  .++ .....+..+.+...|+||+.|.++|+||+.+++++..+....+
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~   95 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSP   95 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCe
Confidence            5788999999999999999999876666542  222 2233445677888999999999999999999999999988899


Q ss_pred             EEEEEecCCCceEEEec------C-----------------------------CceEEEEcCCCCEEEEeeCCCeEEEEE
Q psy8891          80 ITSLDLSKGTETKFAGS------S-----------------------------CNDLVTYDGAGTTIISGHFDKKVRFWD  124 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~------~-----------------------------~~~~~~~~~~~~~l~s~s~d~~i~iWd  124 (203)
                      |..++|+.++...++..      .                             ....+.|+|-+.+|++|..|+.|.+||
T Consensus        96 Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~d  175 (327)
T KOG0643|consen   96 VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYD  175 (327)
T ss_pred             eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEE
Confidence            99999998887654311      0                             012357899999999999999999999


Q ss_pred             CCCCceE-EEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         125 FRAEEKV-RDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       125 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ++++... ...+.|+.                       .++.+.+++|..+|+|||.|.+.++||..+-++++++.
T Consensus       176 a~~g~~~v~s~~~h~~-----------------------~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  176 ARTGKELVDSDEEHSS-----------------------KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             cccCceeeechhhhcc-----------------------ccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            9987543 22233321                       23445667889999999999999999999999999875

>KOG1446|consensus

Probab=99.88  E-value=1.3e-19  Score=133.59  Aligned_cols=202  Identities=21%  Similarity=0.309  Sum_probs=151.0

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec---CcCceEEEEeCCCCEEEEecC--CCeEEEEECCCceEEEeee
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG---SSCNDLVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~---~~~~~~~~~~~~~~~l~s~~~--D~~i~vwd~~~~~~~~~~~   75 (203)
                      +++.|+++|..+++++.|.+++|||...++.....   .-..+.++|....+.++.++.  |.+||+-++.+.+-++.+.
T Consensus        18 ~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~   97 (311)
T KOG1446|consen   18 NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP   97 (311)
T ss_pred             eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC
Confidence            36889999999999999999999999886643211   112345666666667776665  9999999999999999998


Q ss_pred             eCC-eEEEEEecCCCceEEEecCCce---------------------EEEEcCCCCEEEEeeCCCeEEEEECCCC--ceE
Q psy8891          76 LHG-KITSLDLSKGTETKFAGSSCND---------------------LVTYDGAGTTIISGHFDKKVRFWDFRAE--EKV  131 (203)
Q Consensus        76 ~~~-~v~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~--~~~  131 (203)
                      +|. .|.+++.+|..+.++.++...+                     +++|+|+|-++|.+.....|+++|+|+.  .|.
T Consensus        98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF  177 (311)
T KOG1446|consen   98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF  177 (311)
T ss_pred             CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence            874 5999999998888776655433                     3678899988888888789999999864  344


Q ss_pred             EEEecc----ceEEEEEecCCcEEEEeecCee-----------EEe----------eeEEEEEEcCCCEEEEecCCCcEE
Q psy8891         132 RDIELH----GKITSLDLSKGKYYFVFAEGFK-----------VQC----------DFTRAVFVVDDDYVAVGSIDGNIY  186 (203)
Q Consensus       132 ~~~~~~----~~v~~~~~~~~~~~~~~~~~~~-----------~~~----------~~~~~~~~~~~~~l~s~s~d~~v~  186 (203)
                      ..+...    .+.+.+.++++...++......           ...          ....+.|.||++++++|+.||+|.
T Consensus       178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~  257 (311)
T KOG1446|consen  178 TTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIH  257 (311)
T ss_pred             eeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEE
Confidence            555443    4567777877654333221100           011          113577899999999999999999


Q ss_pred             EEeCCCceeeeeeccC
Q psy8891         187 VWDCNTEQVEAVLKDM  202 (203)
Q Consensus       187 ~wd~~~~~~~~~~~~~  202 (203)
                      +|++++|..+..+++.
T Consensus       258 vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  258 VWNLETGKKVAVLRGP  273 (311)
T ss_pred             EEEcCCCcEeeEecCC
Confidence            9999999999988763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.88  E-value=1e-19  Score=136.96  Aligned_cols=201  Identities=28%  Similarity=0.433  Sum_probs=148.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      ++.|+|++..|++++.|+.|++||+.+.+..  ...+ .....+.+.++++.+++++.|+.|++||+..++.+..+..+.
T Consensus        14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~   93 (289)
T cd00200          14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT   93 (289)
T ss_pred             EEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC
Confidence            6889999999999999999999999875432  2222 222346677888899999999999999999877766666554


Q ss_pred             -eEEEEEecCCCceEEEecCCc-----------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891          79 -KITSLDLSKGTETKFAGSSCN-----------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        79 -~v~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                       .+.++.+.++...++.+...+                       ..+.|+|++.++++++.|+.|++||+++++.+..+
T Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  173 (289)
T cd00200          94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL  173 (289)
T ss_pred             CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence             788899888755555443222                       23457777888888888999999999988887777


Q ss_pred             eccc-eEEEEEecCCcEEEEeec--Ce----------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee
Q psy8891         135 ELHG-KITSLDLSKGKYYFVFAE--GF----------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       135 ~~~~-~v~~~~~~~~~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~  195 (203)
                      ..+. .+..+.++++...++...  +.                .....+..+.+.+++.++++++.|+.+++||..++++
T Consensus       174 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~  253 (289)
T cd00200         174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC  253 (289)
T ss_pred             ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence            6654 677888777653222211  10                0111345667888888888888899999999999998


Q ss_pred             eeeeccC
Q psy8891         196 EAVLKDM  202 (203)
Q Consensus       196 ~~~~~~~  202 (203)
                      +..++.|
T Consensus       254 ~~~~~~~  260 (289)
T cd00200         254 VQTLSGH  260 (289)
T ss_pred             EEEcccc
Confidence            8887644

>KOG0281|consensus

Probab=99.88  E-value=2.1e-22  Score=150.55  Aligned_cols=162  Identities=22%  Similarity=0.428  Sum_probs=115.3

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE---EeeeeC-CeE
Q psy8891           6 LGDPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV---RDIELH-GKI   80 (203)
Q Consensus         6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~---~~~~~~-~~v   80 (203)
                      .-+.+.++|||.|.||++||+++++.... .+++..++..--++++++|+|.|.+|.|||+..+..+   +.+.+| ..|
T Consensus       244 qyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV  323 (499)
T KOG0281|consen  244 QYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  323 (499)
T ss_pred             eccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence            34677999999999999999999875422 2233333333234569999999999999999876532   233333 557


Q ss_pred             EEEEecCCCceEEEecCCceEE---------------------EEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce
Q psy8891          81 TSLDLSKGTETKFAGSSCNDLV---------------------TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK  139 (203)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~  139 (203)
                      +.++|...  .++.++..-++.                     +..-.|+.+++||.|.+||+||+..|.+++.++.|.+
T Consensus       324 NvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe  401 (499)
T KOG0281|consen  324 NVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE  401 (499)
T ss_pred             eeeccccc--eEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH
Confidence            77776542  344444333333                     3344588999999999999999999999998887764


Q ss_pred             EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         140 ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       140 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      +.                       .++.|  +++.+++|+.||+|++||+.++.
T Consensus       402 Lv-----------------------RciRF--d~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  402 LV-----------------------RCIRF--DNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             hh-----------------------hheee--cCceeeeccccceEEEEeccccc
Confidence            21                       11223  67889999999999999988654

>KOG0274|consensus

Probab=99.88  E-value=5.2e-21  Score=155.94  Aligned_cols=178  Identities=22%  Similarity=0.405  Sum_probs=129.1

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee-eCCeEE
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE-LHGKIT   81 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~-~~~~v~   81 (203)
                      .|..-+..|++||.|.++|+||..++.+......+ ..+.+..-.+..+++||.|.+||||++..+..++.+. +.++|+
T Consensus       256 ~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~  335 (537)
T KOG0274|consen  256 AFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN  335 (537)
T ss_pred             EEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEE
Confidence            34444788999999999999999998875443322 3344556667799999999999999999999999988 557788


Q ss_pred             EEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecC-CcEEEEeecCee
Q psy8891          82 SLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSK-GKYYFVFAEGFK  159 (203)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~-~~~~~~~~~~~~  159 (203)
                      ++..+                     +..+++|++|++|++||+.++++++.+..| ..|.++.+.. ...+-.......
T Consensus       336 ~v~~~---------------------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  336 CVQLD---------------------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTI  394 (537)
T ss_pred             EEEec---------------------CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccce
Confidence            87665                     347888888888888888888888888776 3477766655 222221111100


Q ss_pred             -------E-Eee-------eEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         160 -------V-QCD-------FTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       160 -------~-~~~-------~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                             . .|.       -....+...+++|++++.|++|++||.+++++++++++.
T Consensus       395 kvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  395 KVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             EeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccC
Confidence                   0 000       001123346789999999999999999999999999873

>KOG0285|consensus

Probab=99.88  E-value=5.3e-21  Score=143.34  Aligned_cols=175  Identities=21%  Similarity=0.345  Sum_probs=128.6

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-C
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-G   78 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~   78 (203)
                      +++|+---++++++.|+.||.|||+..+.+-.   +-..+-.+...|.-..|+|||.|.++||||+|+...+..+.+| .
T Consensus       199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~  278 (460)
T KOG0285|consen  199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN  278 (460)
T ss_pred             eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC
Confidence            67888888999999999999999987654322   2222333455676779999999999999999999999888866 4


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEeecC
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFAEG  157 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~  157 (203)
                      .|.++.+.+                   ...++++||-|.+|++||++.|+...++..+. .+.++.++|..+.|++...
T Consensus       279 ~V~~V~~~~-------------------~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  279 PVASVMCQP-------------------TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             cceeEEeec-------------------CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence            566554433                   34589999999999999999998877776553 4778888888777765432


Q ss_pred             eeE----------------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         158 FKV----------------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       158 ~~~----------------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      -.+                +..+....-.-.+.++++|+.+|.+-+||.++|-.-
T Consensus       340 dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~ny  394 (460)
T KOG0285|consen  340 DNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNY  394 (460)
T ss_pred             ccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCccc
Confidence            111                111222222235679999999999999998876433

>KOG0292|consensus

Probab=99.88  E-value=8e-21  Score=156.08  Aligned_cols=181  Identities=19%  Similarity=0.312  Sum_probs=138.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcC---ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSC---NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      .+.|+|.+-.++||+.|-+||+|+..+.++.+....+   ...+.|.+.-..++|+|+|.+||||+.++..++..+++|.
T Consensus        56 gv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn  135 (1202)
T KOG0292|consen   56 GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN  135 (1202)
T ss_pred             eeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc
Confidence            4789999999999999999999999988776543332   3456677777799999999999999999999998888875


Q ss_pred             e-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC---Cc--e----------------------
Q psy8891          79 K-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA---EE--K----------------------  130 (203)
Q Consensus        79 ~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~---~~--~----------------------  130 (203)
                      . |.+..|+|                   ....|+|+|-|.+||+||+..   .+  +                      
T Consensus       136 HYVMcAqFhp-------------------tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~Da  196 (1202)
T KOG0292|consen  136 HYVMCAQFHP-------------------TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDA  196 (1202)
T ss_pred             eEEEeeccCC-------------------ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCe
Confidence            4 55555554                   445899999999999999742   10  0                      


Q ss_pred             E--EEEeccc-eEEEEEecCCcEEEEeecCe--------------------eEEeeeEEEEEEcCCCEEEEecCCCcEEE
Q psy8891         131 V--RDIELHG-KITSLDLSKGKYYFVFAEGF--------------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYV  187 (203)
Q Consensus       131 ~--~~~~~~~-~v~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~  187 (203)
                      +  +.++.|. .|+-.++++...+++++..-                    .++.+++.+.|+|..+.++|.|+|+++|+
T Consensus       197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV  276 (1202)
T KOG0292|consen  197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV  276 (1202)
T ss_pred             eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence            0  1112222 26666777766666654321                    12335678889999999999999999999


Q ss_pred             EeCCCceeeeeecc
Q psy8891         188 WDCNTEQVEAVLKD  201 (203)
Q Consensus       188 wd~~~~~~~~~~~~  201 (203)
                      ||+.....+++++.
T Consensus       277 wDm~kRt~v~tfrr  290 (1202)
T KOG0292|consen  277 WDMTKRTSVQTFRR  290 (1202)
T ss_pred             Eecccccceeeeec
Confidence            99999999999864

>KOG0277|consensus

Probab=99.88  E-value=6.8e-21  Score=136.92  Aligned_cols=159  Identities=21%  Similarity=0.379  Sum_probs=112.5

Q ss_pred             ceEEcCCC-CEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEE--EeC-CCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVT--YDG-AGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~--~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      .|+|+++. .++++++.||++||||+......   ++.+. ..+..  +.+ ....++++|+|++||+||...+..++++
T Consensus        65 dV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~-~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf  143 (311)
T KOG0277|consen   65 DVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHK-REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF  143 (311)
T ss_pred             EeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhh-hheEEeccccccceeEEeeccCCceEeecCCCCcceEee
Confidence            47788755 57889999999999997543221   11111 23333  333 3457888899999999999988888888


Q ss_pred             eeCC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEE
Q psy8891          75 ELHG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYF  152 (203)
Q Consensus        75 ~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~  152 (203)
                      .+|. .|+...++|..                  ...++++|.|+++++||++.......++.|. ++.+.+++.     
T Consensus       144 ~gh~~~Iy~a~~sp~~------------------~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k-----  200 (311)
T KOG0277|consen  144 NGHNSCIYQAAFSPHI------------------PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK-----  200 (311)
T ss_pred             cCCccEEEEEecCCCC------------------CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc-----
Confidence            8764 47777777643                  3589999999999999998654433455554 444433331     


Q ss_pred             EeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC-ceeeeeeccC
Q psy8891         153 VFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT-EQVEAVLKDM  202 (203)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~-~~~~~~~~~~  202 (203)
                                        -+...|+||+.|+.||.||++. ..++.+|.+|
T Consensus       201 ------------------y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh  233 (311)
T KOG0277|consen  201 ------------------YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH  233 (311)
T ss_pred             ------------------cCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence                              2557899999999999999875 5666676654

>KOG0319|consensus

Probab=99.87  E-value=3.1e-21  Score=155.51  Aligned_cols=146  Identities=22%  Similarity=0.415  Sum_probs=119.0

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc-CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS-CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~-~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +||+.+|+.+.++|||.|++.|+|+++.....  +.++. ....|.|++.++.|+|+|.|++||||.+.+..+++++++|
T Consensus       467 N~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH  546 (775)
T KOG0319|consen  467 NCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH  546 (775)
T ss_pred             cceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc
Confidence            58999999999999999999999999854432  23332 2445778999999999999999999999999999999976


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEee
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFA  155 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~  155 (203)
                       ..|....|-.                   +|.+|+|++.||-|++|++.+++|+.++..|. +|-++.           
T Consensus       547 ~~aVlra~F~~-------------------~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~-----------  596 (775)
T KOG0319|consen  547 TSAVLRASFIR-------------------NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS-----------  596 (775)
T ss_pred             cceeEeeeeee-------------------CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe-----------
Confidence             4466555543                   56699999999999999999999988887663 343333           


Q ss_pred             cCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                                   .++...+|+||+.|+.|.+|.
T Consensus       597 -------------~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  597 -------------VSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             -------------ecCccceeEecCCCeEEEEee
Confidence                         345667999999999999996

>KOG0295|consensus

Probab=99.87  E-value=9.3e-21  Score=142.03  Aligned_cols=146  Identities=28%  Similarity=0.512  Sum_probs=114.5

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeC---------------CCCEEEEecCCCeEEEEE
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDG---------------AGTTIISGHFDKKVRFWD   64 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~---------------~~~~l~s~~~D~~i~vwd   64 (203)
                      ++-+.||..++++|.|.+|++|-+.+.+++.   .+..+...+.|.|               .++.+.++++|++||+||
T Consensus       241 v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd  320 (406)
T KOG0295|consen  241 VRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD  320 (406)
T ss_pred             EEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence            4567899999999999999999988764421   1222333444422               235999999999999999


Q ss_pred             CCCceEEEeeeeCC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce-EEE
Q psy8891          65 FRAEEKVRDIELHG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITS  142 (203)
Q Consensus        65 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~-v~~  142 (203)
                      +.++.++.++..|+ .|+.++|+|                   .|++|+|+.+|+++++||+++.++.++++.+.. +++
T Consensus       321 v~tg~cL~tL~ghdnwVr~~af~p-------------------~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~  381 (406)
T KOG0295|consen  321 VSTGMCLFTLVGHDNWVRGVAFSP-------------------GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS  381 (406)
T ss_pred             ccCCeEEEEEecccceeeeeEEcC-------------------CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence            99999999998875 477766655                   567999999999999999999999999987754 555


Q ss_pred             EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ++++.                        +..+++||+-|.++++|..+
T Consensus       382 lDfh~------------------------~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  382 LDFHK------------------------TAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             EecCC------------------------CCceEEeccccceeeeeecC
Confidence            55543                        33489999999999999753

>KOG0291|consensus

Probab=99.87  E-value=7.5e-20  Score=148.13  Aligned_cols=115  Identities=19%  Similarity=0.347  Sum_probs=83.0

Q ss_pred             ceEEcCCCCEEEEEeC-CCcEEEEeCCCCCeEEecCc---CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSC-DRTLKIWDLRSTETKFAGSS---CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-D~~v~lwdl~~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      .+.|+.-|.+|+-|+. =|.+-+|++++....++.+.   ....+.++|||+.+++|+.||+|||||.+.+-|+.++..|
T Consensus       312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH  391 (893)
T KOG0291|consen  312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH  391 (893)
T ss_pred             EEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC
Confidence            5678888999998765 37899999988665444332   2345789999999999999999999999999999988776


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                       ..|+.+.|+..+.                   .+++.+-||+||.||+..++..+++.
T Consensus       392 ts~Vt~v~f~~~g~-------------------~llssSLDGtVRAwDlkRYrNfRTft  431 (893)
T KOG0291|consen  392 TSGVTAVQFTARGN-------------------VLLSSSLDGTVRAWDLKRYRNFRTFT  431 (893)
T ss_pred             CCceEEEEEEecCC-------------------EEEEeecCCeEEeeeecccceeeeec
Confidence             4577776665444                   45555555555555555444444443

>KOG0282|consensus

Probab=99.87  E-value=2.3e-21  Score=149.70  Aligned_cols=165  Identities=29%  Similarity=0.466  Sum_probs=119.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCC-CEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~-~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      .++|+++|..++|+|.|+++|+||++++++.  +........+.+.|++ +.+++|+.|+.|+-||+|.++.+++...| 
T Consensus       263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL  342 (503)
T KOG0282|consen  263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL  342 (503)
T ss_pred             hhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence            4689999999999999999999999998865  3334444567788877 79999999999999999998765554332 


Q ss_pred             CeEEEEEecCCCceEEE-------------------------------------------ecCCce--------------
Q psy8891          78 GKITSLDLSKGTETKFA-------------------------------------------GSSCND--------------  100 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~-------------------------------------------~~~~~~--------------  100 (203)
                      +.|..+.|-+++...+.                                           .+..+.              
T Consensus       343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk  422 (503)
T KOG0282|consen  343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK  422 (503)
T ss_pred             hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence            34444444433332221                                           111111              


Q ss_pred             --------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEeecCeeEEeeeE
Q psy8891         101 --------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFAEGFKVQCDFT  165 (203)
Q Consensus       101 --------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~  165 (203)
                                    -+.|+|||++|++|..||.+.+||.++-..+..+..+. .+..+++++.                 
T Consensus       423 kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~-----------------  485 (503)
T KOG0282|consen  423 KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV-----------------  485 (503)
T ss_pred             hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC-----------------
Confidence                          14589999999999999999999998877776666663 3433343321                 


Q ss_pred             EEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         166 RAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       166 ~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                            ....+|||+.||.|++||
T Consensus       486 ------e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  486 ------EPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ------CcceeEecccCceeEecC
Confidence                  245799999999999997

>KOG1273|consensus

Probab=99.87  E-value=6.9e-20  Score=135.46  Aligned_cols=202  Identities=16%  Similarity=0.295  Sum_probs=151.3

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET---KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      .|+.|++.|..|+.|..||.|-+||+.+...   ...+..+...++|+++|+.|+|+|.|..|++||+..+.+++.+...
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~  106 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD  106 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence            4899999999999999999999999987432   2233445667899999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCCceEEEec---CCce-------------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891          78 GKITSLDLSKGTETKFAGS---SCND-------------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~---~~~~-------------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                      ++|....++|.........   ....                         ...|++.|++|++|...|++-++|..+-+
T Consensus       107 spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e  186 (405)
T KOG1273|consen  107 SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE  186 (405)
T ss_pred             CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhe
Confidence            9998888888543322110   0001                         12367779999999999999999999888


Q ss_pred             eEEEEecc--ceEEEEEecCCc-EEEEeecCee----------------------------EEeeeEEEEEEcCCCEEEE
Q psy8891         130 KVRDIELH--GKITSLDLSKGK-YYFVFAEGFK----------------------------VQCDFTRAVFVVDDDYVAV  178 (203)
Q Consensus       130 ~~~~~~~~--~~v~~~~~~~~~-~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~l~s  178 (203)
                      ++..+...  ..|+.+-++... +++.......                            ....|.+++|+.+|.|++.
T Consensus       187 ~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a  266 (405)
T KOG1273|consen  187 CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCA  266 (405)
T ss_pred             eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEe
Confidence            87666543  246666665432 3332221110                            0124567889999999877


Q ss_pred             ec-CCCcEEEEeCCCceeeeeeccC
Q psy8891         179 GS-IDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       179 ~s-~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      |+ .-..++||....|.+++.|.|.
T Consensus       267 ~s~~aHaLYIWE~~~GsLVKILhG~  291 (405)
T KOG1273|consen  267 GSARAHALYIWEKSIGSLVKILHGT  291 (405)
T ss_pred             ccccceeEEEEecCCcceeeeecCC
Confidence            76 4778999999999999999763

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.87  E-value=1.4e-19  Score=156.04  Aligned_cols=177  Identities=16%  Similarity=0.253  Sum_probs=114.2

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeEE--ec-CcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETKF--AG-SSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~~--~~-~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      ++.|++ ++.+|+|++.|++|++||+.+.+...  .. ......+.++| ++.+|+||+.|++|++||++++..+..+..
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~  616 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT  616 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence            456765 47899999999999999998765432  22 22234456765 678999999999999999999888777766


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEEecc-ceEEEEEecCCcEEEEe
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH-GKITSLDLSKGKYYFVF  154 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~-~~~~~~~~-~~v~~~~~~~~~~~~~~  154 (203)
                      +..+.++.+.+                  ++|..|++|+.|++|++||++++. ++..+..+ ..|..+.+.++..++..
T Consensus       617 ~~~v~~v~~~~------------------~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~  678 (793)
T PLN00181        617 KANICCVQFPS------------------ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSS  678 (793)
T ss_pred             CCCeEEEEEeC------------------CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEE
Confidence            66666666533                  234566666666666666665543 23333322 23444444332222211


Q ss_pred             ecCee-----------------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         155 AEGFK-----------------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       155 ~~~~~-----------------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      .....                       +......+.+++++.+|++|+.|+.|++|+.....++
T Consensus       679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~  743 (793)
T PLN00181        679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV  743 (793)
T ss_pred             ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence            11000                       0011234567889999999999999999998765544

>KOG0276|consensus

Probab=99.86  E-value=2.3e-20  Score=148.47  Aligned_cols=179  Identities=20%  Similarity=0.346  Sum_probs=137.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      ||.|+|-.-+++++=..|.|.|||.+++...   .....+.....+-+.-+.+++|++|..||||+..+.+.+++++.|.
T Consensus        18 sVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~   97 (794)
T KOG0276|consen   18 SVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHS   97 (794)
T ss_pred             eeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccc
Confidence            6889999999999999999999999875431   1122222233444556799999999999999999999999998774


Q ss_pred             -eEEEEEecCCCceEEEecCCceE------------------------EEEcC-CCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          79 -KITSLDLSKGTETKFAGSSCNDL------------------------VTYDG-AGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        79 -~v~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~-~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                       -|++++.+|-.+.+++++..-.+                        ++|.| |-+.++|++-|++|++|.+-+..+..
T Consensus        98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf  177 (794)
T KOG0276|consen   98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF  177 (794)
T ss_pred             cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence             59999999987777765543322                        34444 45688888889999999888877777


Q ss_pred             EEeccce-EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         133 DIELHGK-ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       133 ~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      +++.|.+ |++++.-++                      +|..+|+||+.|.+|++||..+.+|+++|+||
T Consensus       178 Tl~gHekGVN~Vdyy~~----------------------gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH  226 (794)
T KOG0276|consen  178 TLEGHEKGVNCVDYYTG----------------------GDKPYLISGADDLTIKVWDYQTKSCVQTLEGH  226 (794)
T ss_pred             eeeccccCcceEEeccC----------------------CCcceEEecCCCceEEEeecchHHHHHHhhcc
Confidence            7776643 554443211                      24569999999999999999999999999987

>KOG0313|consensus

Probab=99.86  E-value=1.9e-20  Score=141.05  Aligned_cols=157  Identities=22%  Similarity=0.402  Sum_probs=111.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--------e-------------------EEec-CcCceEEEEeCCCCEEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--------T-------------------KFAG-SSCNDLVTYDGAGTTIIS   53 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--------~-------------------~~~~-~~~~~~~~~~~~~~~l~s   53 (203)
                      ||+-.++|.+++|||+|.++++|+.....        .                   ...+ ..++..+.|.+ ...++|
T Consensus       198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS  276 (423)
T KOG0313|consen  198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYS  276 (423)
T ss_pred             EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEe
Confidence            56778999999999999999999932100        0                   0111 12234455654 679999


Q ss_pred             ecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce-E-
Q psy8891          54 GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK-V-  131 (203)
Q Consensus        54 ~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~-~-  131 (203)
                      +|+|.+||+||+.++....++.......+++..                   |..+.|++|+.|+.||+||.|++.. + 
T Consensus       277 ~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~-------------------~~~~Ll~~gssdr~irl~DPR~~~gs~v  337 (423)
T KOG0313|consen  277 VSWDHTIKVWDLETGGLKSTLTTNKSLNCISYS-------------------PLSKLLASGSSDRHIRLWDPRTGDGSVV  337 (423)
T ss_pred             ecccceEEEEEeecccceeeeecCcceeEeecc-------------------cccceeeecCCCCceeecCCCCCCCcee
Confidence            999999999999999887776665556665544                   4556899999999999999997642 1 


Q ss_pred             -EEEecc-ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCC-CEEEEecCCCcEEEEeCCCce-eeeeeccC
Q psy8891         132 -RDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDD-DYVAVGSIDGNIYVWDCNTEQ-VEAVLKDM  202 (203)
Q Consensus       132 -~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~v~~wd~~~~~-~~~~~~~~  202 (203)
                       +.+..| .-|.++                        ..+|.+ .+|++|+.|+++++||+++.+ ++..|.+|
T Consensus       338 ~~s~~gH~nwVssv------------------------kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h  388 (423)
T KOG0313|consen  338 SQSLIGHKNWVSSV------------------------KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH  388 (423)
T ss_pred             EEeeecchhhhhhe------------------------ecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence             122222 113222                        233433 469999999999999999877 88888765

>PTZ00421 coronin; Provisional

Probab=99.86  E-value=7.6e-20  Score=148.57  Aligned_cols=157  Identities=15%  Similarity=0.210  Sum_probs=114.1

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeE---------------EecC-cCceEEEEeC-CCCEEEEecCCCeEEEEECC
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETK---------------FAGS-SCNDLVTYDG-AGTTIISGHFDKKVRFWDFR   66 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---------------~~~~-~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~   66 (203)
                      ..++|+..+++++.+.....|+...+...               +.++ .....+.|+| +++.|+||+.|++|++||+.
T Consensus        27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~  106 (493)
T PTZ00421         27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIP  106 (493)
T ss_pred             cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecC
Confidence            45678888899999999999986542211               1111 2234467888 78899999999999999997


Q ss_pred             Cce-------EEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891          67 AEE-------KVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        67 ~~~-------~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      .+.       ++..+..| ..|.+++|                   +|++ .+|++++.|++|++||+.+++.+..+..+
T Consensus       107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f-------------------~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h  167 (493)
T PTZ00421        107 EEGLTQNISDPIVHLQGHTKKVGIVSF-------------------HPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH  167 (493)
T ss_pred             CCccccccCcceEEecCCCCcEEEEEe-------------------CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence            653       23334333 33555544                   4443 58999999999999999988776655433


Q ss_pred             ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         138 GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       138 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      ..                       .+..+.++|++.+|++|+.|++|++||+++++.+.++.+|
T Consensus       168 ~~-----------------------~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H  209 (493)
T PTZ00421        168 SD-----------------------QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH  209 (493)
T ss_pred             CC-----------------------ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence            21                       1334567789999999999999999999999998888765

>KOG0293|consensus

Probab=99.86  E-value=1.9e-20  Score=142.62  Aligned_cols=167  Identities=24%  Similarity=0.330  Sum_probs=132.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      ||+|.|||..+++||.|+++..||+.......   ...+...-++..+||+.+++...|..|++++..+......++.+.
T Consensus       317 sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~  396 (519)
T KOG0293|consen  317 SCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ  396 (519)
T ss_pred             eeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC
Confidence            78999999999999999999999998643211   111222335677899999999999999999998776666677788


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEc-------------------------C-CCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYD-------------------------G-AGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~-~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      +|+++.++.++...+..-.+..+..|+                         . +...++|||.|++|+||+..++.++.
T Consensus       397 ~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~  476 (519)
T KOG0293|consen  397 PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA  476 (519)
T ss_pred             ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence            999999999998877765555554443                         2 34689999999999999999999999


Q ss_pred             EEeccce-EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         133 DIELHGK-ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       133 ~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ++..|.. +++++.+|                       .+..+||+||.||+||||-..
T Consensus       477 ~LsGHs~~vNcVswNP-----------------------~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  477 VLSGHSKTVNCVSWNP-----------------------ADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             eecCCcceeeEEecCC-----------------------CCHHHhhccCCCCeEEEecCC
Confidence            8887753 56555554                       245689999999999999865

>PTZ00420 coronin; Provisional

Probab=99.86  E-value=1.6e-19  Score=147.91  Aligned_cols=159  Identities=15%  Similarity=0.243  Sum_probs=111.3

Q ss_pred             ceEEcCCCCE-EEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTK-VVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~-l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      +++|+|++.. |+|||.|++|++||+++++...  ........+.|++++++|++++.|+.|+|||+++++.+.++..|.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence            6899999875 5799999999999999866432  222234456789999999999999999999999998877776553


Q ss_pred             e-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC----eEEEEECCC-CceEEEEeccceEEEEEecCCcEEE
Q psy8891          79 K-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK----KVRFWDFRA-EEKVRDIELHGKITSLDLSKGKYYF  152 (203)
Q Consensus        79 ~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~----~i~iWd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~  152 (203)
                      . +....+.              +..|++++.+|++++.|+    +|++||+++ ..++..+..+.....+.        
T Consensus       210 g~~~s~~v~--------------~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~--------  267 (568)
T PTZ00420        210 GGKNTKNIW--------------IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI--------  267 (568)
T ss_pred             CCceeEEEE--------------eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE--------
Confidence            2 2111110              123557788999988874    799999995 55555443332111100        


Q ss_pred             EeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee
Q psy8891         153 VFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~  195 (203)
                                   ..-..+++.++++|+.|++||+|++..+.+
T Consensus       268 -------------p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~  297 (568)
T PTZ00420        268 -------------PHYDESTGLIYLIGKGDGNCRYYQHSLGSI  297 (568)
T ss_pred             -------------EeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence                         000123577899999999999999987653

>KOG0277|consensus

Probab=99.86  E-value=1e-20  Score=136.07  Aligned_cols=157  Identities=25%  Similarity=0.413  Sum_probs=110.3

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeE--EecC-cCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETK--FAGS-SCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~-~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      ++.|++ +...++++|+|++||+||..-++..  +.++ .+.-.+.++| .++.++|+|-|+++++||++.......+..
T Consensus       109 Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a  188 (311)
T KOG0277|consen  109 SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA  188 (311)
T ss_pred             EeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe
Confidence            455655 4567889999999999998765533  2222 1122234554 678999999999999999998766555777


Q ss_pred             CC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEEeccceEEEEEecCCcEEEEe
Q psy8891          77 HG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELHGKITSLDLSKGKYYFVF  154 (203)
Q Consensus        77 ~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~  154 (203)
                      |. ++.+.++++..                  .+.++|++-|+.||.||+++-+ ++.++..|+-               
T Consensus       189 h~~Eil~cdw~ky~------------------~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~---------------  235 (311)
T KOG0277|consen  189 HNSEILCCDWSKYN------------------HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL---------------  235 (311)
T ss_pred             ccceeEeecccccC------------------CcEEEecCCCceEEEEehhhccccceeecCCce---------------
Confidence            65 78888888743                  2589999999999999998643 3333332221               


Q ss_pred             ecCeeEEeeeEEEEEEcC-CCEEEEecCCCcEEEEeCCC-ceeeeee
Q psy8891         155 AEGFKVQCDFTRAVFVVD-DDYVAVGSIDGNIYVWDCNT-EQVEAVL  199 (203)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~v~~wd~~~-~~~~~~~  199 (203)
                              .+.++.++|. ...|+|++.|-++||||... -.++++.
T Consensus       236 --------AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~  274 (311)
T KOG0277|consen  236 --------AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV  274 (311)
T ss_pred             --------EEEEEecCcchhhHhhhccccceEEecccccchhhhhhh
Confidence                    2334556664 46799999999999999874 3444444

>KOG0288|consensus

Probab=99.86  E-value=9.1e-21  Score=144.09  Aligned_cols=164  Identities=34%  Similarity=0.564  Sum_probs=130.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET---KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      +++|......+++||.|.+||+||+....+   .+....++++++-   +..++||..|++||.||.+...++..+..++
T Consensus       266 ~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg  342 (459)
T KOG0288|consen  266 AAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGG  342 (459)
T ss_pred             eehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCc
Confidence            566777777799999999999999987554   3445566666653   4689999999999999999999999999999


Q ss_pred             eEEEEEecCCCceEEEecCCc---------------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceE
Q psy8891          79 KITSLDLSKGTETKFAGSSCN---------------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV  131 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~  131 (203)
                      .|+++++++++..++......                           +-++|+|++.++++||.||.|+||++.++++.
T Consensus       343 ~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE  422 (459)
T KOG0288|consen  343 RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE  422 (459)
T ss_pred             ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence            999999998887766543322                           23679999999999999999999999999887


Q ss_pred             EEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         132 RDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       132 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      +.+.....-.                     .++.+.++|.|.++++++.++.+.+|.
T Consensus       423 ~~l~~s~s~~---------------------aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  423 KVLSLSTSNA---------------------AITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EEeccCCCCc---------------------ceEEEEEcCCCchhhcccCCcceEecC
Confidence            7665442100                     133455667889999999999999993

>KOG0646|consensus

Probab=99.86  E-value=7.4e-20  Score=140.92  Aligned_cols=182  Identities=20%  Similarity=0.327  Sum_probs=138.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC---------ce
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA---------EE   69 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~---------~~   69 (203)
                      |+.-+|+|.+|+.|...+.+.+|.+.++..+   ..+......+.|..|+.+++|||.||.|.+|++.+         .+
T Consensus        86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~  165 (476)
T KOG0646|consen   86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK  165 (476)
T ss_pred             eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence            5667899999999989999999999998753   23444556678889999999999999999998732         23


Q ss_pred             EEEeeeeCC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCC
Q psy8891          70 KVRDIELHG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKG  148 (203)
Q Consensus        70 ~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~  148 (203)
                      +++.+..|. +|+.+....++                 ....|+|+|.|+++|+||+..+..+.++.++..+.++.+++.
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg-----------------~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpa  228 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGG-----------------TNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPA  228 (476)
T ss_pred             ceeeeccCcceeEEEEecCCC-----------------ccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEccc
Confidence            344444442 45555554432                 224799999999999999999999999999988999888775


Q ss_pred             cEEEEee--cC------------e--------------e------EE--eeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         149 KYYFVFA--EG------------F--------------K------VQ--CDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       149 ~~~~~~~--~~------------~--------------~------~~--~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      ...+..+  +|            +              .      ..  ..+++++++.|+..|++|+.||.|.+||..+
T Consensus       229 e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  229 ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence            4333211  11            0              0      01  2567888999999999999999999999999


Q ss_pred             ceeeeeec
Q psy8891         193 EQVEAVLK  200 (203)
Q Consensus       193 ~~~~~~~~  200 (203)
                      .|+++++.
T Consensus       309 ~Q~iRtl~  316 (476)
T KOG0646|consen  309 KQCIRTLQ  316 (476)
T ss_pred             HHHHHHHh
Confidence            99999864

>KOG1036|consensus

Probab=99.85  E-value=6.1e-19  Score=129.78  Aligned_cols=198  Identities=20%  Similarity=0.283  Sum_probs=133.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK   79 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~   79 (203)
                      +++|+|.+..|+.+|+||++++||......  ++....+.--++|. +...+++|+.||.||.+|+.++.......+..+
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~-d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~   96 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFA-DESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEG   96 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeecc-CCceEEEeccCceEEEEEecCCcceeeccCCCc
Confidence            578999999999999999999999987543  23333333334454 367999999999999999999887666666678


Q ss_pred             EEEEEecCCCceEEEecCCceEEEEcC--------------------CCCEEEEeeCCCeEEEEECCCCceEE---EEec
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVTYDG--------------------AGTTIISGHFDKKVRFWDFRAEEKVR---DIEL  136 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~s~s~d~~i~iWd~~~~~~~~---~~~~  136 (203)
                      ++++...+....+++|+....+..|+|                    .|..|+.|..|+.|.+||+|+-....   +-.+
T Consensus        97 i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l  176 (323)
T KOG1036|consen   97 IRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL  176 (323)
T ss_pred             eEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccc
Confidence            999988876666666665555555544                    25566776777777777776532211   1112


Q ss_pred             cceEEEEEecC--CcEEEEeec-----------------------------CeeEEeeeEEEEEEcCCCEEEEecCCCcE
Q psy8891         137 HGKITSLDLSK--GKYYFVFAE-----------------------------GFKVQCDFTRAVFVVDDDYVAVGSIDGNI  185 (203)
Q Consensus       137 ~~~v~~~~~~~--~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~v  185 (203)
                      .-++.++.+-+  ..+..-.-+                             +....+++..+.|+|--+.|+||+.||.|
T Consensus       177 kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V  256 (323)
T KOG1036|consen  177 KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIV  256 (323)
T ss_pred             eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceE
Confidence            22334443332  122221111                             11233456678899998999999999999


Q ss_pred             EEEeCCCceeeeeec
Q psy8891         186 YVWDCNTEQVEAVLK  200 (203)
Q Consensus       186 ~~wd~~~~~~~~~~~  200 (203)
                      .+||+...+.++.|.
T Consensus       257 ~~Wd~~~rKrl~q~~  271 (323)
T KOG1036|consen  257 NIWDLFNRKRLKQLA  271 (323)
T ss_pred             EEccCcchhhhhhcc
Confidence            999998877777663

>KOG0318|consensus

Probab=99.85  E-value=8.1e-19  Score=137.19  Aligned_cols=178  Identities=21%  Similarity=0.310  Sum_probs=130.3

Q ss_pred             CceEEcCCC-CEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           1 MCAKFLGDP-TKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         1 ~~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      ++|+|.|.- -+++|||+|++|.+|+=.--+-+.   .+..-...+.++|||+.++|.|.||+|.+||-.+++.+.++..
T Consensus       151 ns~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~  230 (603)
T KOG0318|consen  151 NSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED  230 (603)
T ss_pred             eeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC
Confidence            467777754 479999999999999643221111   1223355688999999999999999999999999999888862


Q ss_pred             ----CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEE----EEecCC
Q psy8891          77 ----HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITS----LDLSKG  148 (203)
Q Consensus        77 ----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~----~~~~~~  148 (203)
                          .+.|.++                   .|+||+.+++|+|.|+++||||+.+..+++++.+..++..    +-+..+
T Consensus       231 ~~aHkGsIfal-------------------sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd  291 (603)
T KOG0318|consen  231 SDAHKGSIFAL-------------------SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD  291 (603)
T ss_pred             CCCccccEEEE-------------------EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence                2556655                   4666778999999999999999999999998877654322    122222


Q ss_pred             cEEEEeecCe----------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         149 KYYFVFAEGF----------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       149 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      ..+-+...|.                .+...++.+..++++++|++|+.||.|.-||..+|..-+
T Consensus       292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~  356 (603)
T KOG0318|consen  292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR  356 (603)
T ss_pred             eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence            2222222221                224467788889999999999999999999988765543

>KOG0643|consensus

Probab=99.84  E-value=1.7e-18  Score=125.49  Aligned_cols=193  Identities=21%  Similarity=0.285  Sum_probs=146.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEe-----cCCCeEEEEECCC-------
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISG-----HFDKKVRFWDFRA-------   67 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~-----~~D~~i~vwd~~~-------   67 (203)
                      |+....+.+.++|||+|.++||||+++++.+..  ...+...+.|+.++++++.+     +..+.|.++|++.       
T Consensus        57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s  136 (327)
T KOG0643|consen   57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS  136 (327)
T ss_pred             EEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcc
Confidence            667778899999999999999999999887543  33444557788888766655     3457999999983       


Q ss_pred             ceEEEee-eeCCeEEEEEecCCCceEEEecCCceE------------------------EEEcCCCCEEEEeeCCCeEEE
Q psy8891          68 EEKVRDI-ELHGKITSLDLSKGTETKFAGSSCNDL------------------------VTYDGAGTTIISGHFDKKVRF  122 (203)
Q Consensus        68 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~s~s~d~~i~i  122 (203)
                      .++...+ ....+++..-|.+.++.+++|.....+                        +.++++..++++++.|.+.++
T Consensus       137 ~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl  216 (327)
T KOG0643|consen  137 EEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL  216 (327)
T ss_pred             cCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcccee
Confidence            3334333 334678888888888888877655433                        356788899999999999999


Q ss_pred             EECCCCceEEEEeccceEEEEEecCCcEEEEeecCe--------------------------------eEEeeeEEEEEE
Q psy8891         123 WDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGF--------------------------------KVQCDFTRAVFV  170 (203)
Q Consensus       123 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~  170 (203)
                      ||.++-++++++....++++.+++|..-.++...|+                                .+-.++..++|+
T Consensus       217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh  296 (327)
T KOG0643|consen  217 VDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH  296 (327)
T ss_pred             eeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence            999999999999988889998888754433322211                                112356788999


Q ss_pred             cCCCEEEEecCCCcEEEEeCCCce
Q psy8891         171 VDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       171 ~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      |+|+-.+||++||.||+....+.-
T Consensus       297 PdGksYsSGGEDG~VR~h~Fd~~Y  320 (327)
T KOG0643|consen  297 PDGKSYSSGGEDGYVRLHHFDSNY  320 (327)
T ss_pred             CCCcccccCCCCceEEEEEeccch
Confidence            999999999999999998766543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.84  E-value=1.1e-17  Score=125.83  Aligned_cols=188  Identities=23%  Similarity=0.419  Sum_probs=138.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc-CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS-CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~-~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      ++.|+|+++.+++++.|+.|++||+...+..  ..... ....+.+.++++.+++++.|+.+++||++.++....+..+ 
T Consensus        56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  135 (289)
T cd00200          56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT  135 (289)
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC
Confidence            5789999999999999999999999874322  22221 2344567777789999988999999999988777776644 


Q ss_pred             CeEEEEEecCCCceEEEecCCc-----------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCN-----------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                      ..+.++.++++...++.+...+                       ..+.|+|+++.+++++.|+.|++||++.++....+
T Consensus       136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  215 (289)
T cd00200         136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL  215 (289)
T ss_pred             CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence            5689999998766555543222                       12567888889999999999999999988887777


Q ss_pred             ecc-ceEEEEEecCCcEEEEeec--Cee----------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         135 ELH-GKITSLDLSKGKYYFVFAE--GFK----------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       135 ~~~-~~v~~~~~~~~~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      ..+ ..+..+.++++..+++...  +..                ....+..+.+++++.+|++++.|+.+++|+
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            433 4678888877544444332  110                011345667888889999999999999996

>KOG0267|consensus

Probab=99.84  E-value=4.9e-21  Score=154.19  Aligned_cols=157  Identities=25%  Similarity=0.423  Sum_probs=123.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET---KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      |++|+++...|++|+.||+||+|||+..+.   ++.+.....-+.|.|.+.+.++|+.|..+++||.+...+.+....|.
T Consensus        75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~  154 (825)
T KOG0267|consen   75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT  154 (825)
T ss_pred             eeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc
Confidence            689999999999999999999999986542   12211112235688999999999999999999999888887776553


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeecC
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEG  157 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~  157 (203)
                      .+.                  .++.|+|+|+++++++.|.++++||.+.|+.+++|..| +++.+++++           
T Consensus       155 ~vv------------------~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h-----------  205 (825)
T KOG0267|consen  155 RVV------------------DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH-----------  205 (825)
T ss_pred             cee------------------EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccC-----------
Confidence            321                  23456778899999999999999999999998888755 445555544           


Q ss_pred             eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         158 FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                   |..-.+++||.|++|++||+++.+.+...+
T Consensus       206 -------------p~e~Lla~Gs~d~tv~f~dletfe~I~s~~  235 (825)
T KOG0267|consen  206 -------------PLEVLLAPGSSDRTVRFWDLETFEVISSGK  235 (825)
T ss_pred             -------------chhhhhccCCCCceeeeeccceeEEeeccC
Confidence                         334468899999999999999988887665

>KOG0305|consensus

Probab=99.83  E-value=7.9e-19  Score=139.47  Aligned_cols=194  Identities=19%  Similarity=0.339  Sum_probs=147.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe-eeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD-IELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~-~~~~-   77 (203)
                      ++.|+++|..|+.|-.+|+|.|||....+..  ..+.+...+-+...++..+.+|+.|+.|..+|++..+.... +..| 
T Consensus       222 Sv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~  301 (484)
T KOG0305|consen  222 SVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHR  301 (484)
T ss_pred             EEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhccc
Confidence            6899999999999999999999999764421  22212223334445578999999999999999998876544 5544 


Q ss_pred             CeEEEEEecCCCceEEEecCCceE-----------------------EEEcCC-CCEEEEee--CCCeEEEEECCCCceE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGA-GTTIISGH--FDKKVRFWDFRAEEKV  131 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~-~~~l~s~s--~d~~i~iWd~~~~~~~  131 (203)
                      .+|..+.+++++..+..|...+.+                       +.|+|- ...||+|+  .|+.|++||..++..+
T Consensus       302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i  381 (484)
T KOG0305|consen  302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI  381 (484)
T ss_pred             ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe
Confidence            679999999998888776655543                       345553 45777774  5999999999999999


Q ss_pred             EEEeccceEEEEEecCCcEEEEeecCee--------------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         132 RDIELHGKITSLDLSKGKYYFVFAEGFK--------------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       132 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ..+....+|.++.+++....++...|+.                    +...+..++.+||+..+++|+.|+++++|++-
T Consensus       382 ~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  382 DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            9998889999999988775555544421                    12234556778999999999999999999986


Q ss_pred             Ccee
Q psy8891         192 TEQV  195 (203)
Q Consensus       192 ~~~~  195 (203)
                      ....
T Consensus       462 ~~~~  465 (484)
T KOG0305|consen  462 DERP  465 (484)
T ss_pred             CCCC
Confidence            5433

>KOG0275|consensus

Probab=99.83  E-value=7.6e-21  Score=141.24  Aligned_cols=144  Identities=19%  Similarity=0.412  Sum_probs=112.0

Q ss_pred             CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee---------CCeEEEEEecCCCceEEEecCCceEEEEcCCC
Q psy8891          38 CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL---------HGKITSLDLSKGTETKFAGSSCNDLVTYDGAG  108 (203)
Q Consensus        38 ~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (203)
                      +.....|+||+++|+|||.||.|-||+..+++..+.+..         +.+|.++.|                   +.|+
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-------------------SRDs  275 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-------------------SRDS  275 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee-------------------cccH
Confidence            345577999999999999999999999988876555433         344555554                   4556


Q ss_pred             CEEEEeeCCCeEEEEECCCCceEEEEe-ccc-eEEEEEecCCcEEEEeec--------Ce----------eEEeeeEEEE
Q psy8891         109 TTIISGHFDKKVRFWDFRAEEKVRDIE-LHG-KITSLDLSKGKYYFVFAE--------GF----------KVQCDFTRAV  168 (203)
Q Consensus       109 ~~l~s~s~d~~i~iWd~~~~~~~~~~~-~~~-~v~~~~~~~~~~~~~~~~--------~~----------~~~~~~~~~~  168 (203)
                      ..+++|+-||+|++|.+++|.|++.|. .|. .++++.++.+...+....        |.          .+..-+..+.
T Consensus       276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence            689999999999999999999998886 443 488888887655443321        11          1122345678


Q ss_pred             EEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         169 FVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       169 ~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      |.++|..++++|.||+|++|+.++++++.+++
T Consensus       356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk  387 (508)
T KOG0275|consen  356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFK  387 (508)
T ss_pred             EcCCCCeEEEecCCccEEEecCcchhhhhhcc
Confidence            99999999999999999999999999999986

>KOG0645|consensus

Probab=99.83  E-value=1.1e-17  Score=121.39  Aligned_cols=187  Identities=16%  Similarity=0.275  Sum_probs=125.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce---EEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE---KVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~---~~~~   73 (203)
                      +|+|+|.|++|++||.|.++-||.-...+  +.  .. +......++|+++|++|++|+.|+.+-||.+..+.   +...
T Consensus        66 svAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV  145 (312)
T KOG0645|consen   66 SVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV  145 (312)
T ss_pred             eeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence            58999999999999999999999765433  21  22 22334568899999999999999999999987543   4555


Q ss_pred             eeeC-CeEEEEEecCCCceEEEecCCceE--------------------------EEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          74 IELH-GKITSLDLSKGTETKFAGSSCNDL--------------------------VTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        74 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                      ++.| +.|.-+.++|..+.++..+..+++                          +.|++.|..+++++.|++|+||-..
T Consensus       146 L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  146 LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             eccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            5555 447778888866666655554443                          3567788899999999999999854


Q ss_pred             CCceEEEEeccceEEEEEec--------CCc--EEEEeecC-------------eeEEeeeEEEEEEcC-CCEEEEecCC
Q psy8891         127 AEEKVRDIELHGKITSLDLS--------KGK--YYFVFAEG-------------FKVQCDFTRAVFVVD-DDYVAVGSID  182 (203)
Q Consensus       127 ~~~~~~~~~~~~~v~~~~~~--------~~~--~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~l~s~s~d  182 (203)
                      +.-+.   ....++..+++.        .+.  .++.....             ..+..++..+.+.|. +.+|++|+.|
T Consensus       226 ~~~~~---~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD  302 (312)
T KOG0645|consen  226 TDLSG---MHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD  302 (312)
T ss_pred             cCcch---hcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence            32110   001122222222        111  11111110             112225667778884 7899999999


Q ss_pred             CcEEEEeCC
Q psy8891         183 GNIYVWDCN  191 (203)
Q Consensus       183 ~~v~~wd~~  191 (203)
                      |.|++|.+.
T Consensus       303 G~v~~W~l~  311 (312)
T KOG0645|consen  303 GIVNFWELE  311 (312)
T ss_pred             ceEEEEEec
Confidence            999999864

>KOG0306|consensus

Probab=99.82  E-value=6.6e-19  Score=142.64  Aligned_cols=180  Identities=20%  Similarity=0.341  Sum_probs=137.4

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc---------
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET---KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE---------   68 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~---------   68 (203)
                      +|+.|-|.+.++++|...|.+.++|+.....   ..++......+...||+..+++||.|.+||+||+.-.         
T Consensus       416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k  495 (888)
T KOG0306|consen  416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK  495 (888)
T ss_pred             EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccce
Confidence            4667777777788888888888888765332   1122222233566799999999999999999997321         


Q ss_pred             ----eEEEeeeeCCeEEEEEecCCCceEEEecCCceE-----------------------EEEcCCCCEEEEeeCCCeEE
Q psy8891          69 ----EKVRDIELHGKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGAGTTIISGHFDKKVR  121 (203)
Q Consensus        69 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~s~s~d~~i~  121 (203)
                          +..++++....|.++.++|++..+..+-..+++                       +-.+||+..++|||.|+.|+
T Consensus       496 ~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVK  575 (888)
T KOG0306|consen  496 VLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVK  575 (888)
T ss_pred             eeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceE
Confidence                112456667889999999999888777655543                       23578999999999999999


Q ss_pred             EEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         122 FWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       122 iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      +|-+.-|.|.+.+-.|..                       .+..+.|.|+...|+|++.|+.|+-||....+.++.+++
T Consensus       576 iWGLdFGDCHKS~fAHdD-----------------------Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~  632 (888)
T KOG0306|consen  576 IWGLDFGDCHKSFFAHDD-----------------------SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG  632 (888)
T ss_pred             EeccccchhhhhhhcccC-----------------------ceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc
Confidence            999999998877655421                       123456778888999999999999999999999999999


Q ss_pred             CC
Q psy8891         202 MH  203 (203)
Q Consensus       202 ~~  203 (203)
                      ||
T Consensus       633 H~  634 (888)
T KOG0306|consen  633 HH  634 (888)
T ss_pred             ch
Confidence            97

>KOG0647|consensus

Probab=99.82  E-value=1.5e-18  Score=127.61  Aligned_cols=84  Identities=27%  Similarity=0.538  Sum_probs=65.4

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCC--CEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAG--TTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~--~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      |+++|+.||..+++|++|+.+|+|||.+++...  .+......+.|-+..  ..|+|||+|++||.||.|...++.++..
T Consensus        76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L  155 (347)
T KOG0647|consen   76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL  155 (347)
T ss_pred             EEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence            689999999999999999999999999876432  223334445554433  4899999999999999999988888776


Q ss_pred             CCeEEEEE
Q psy8891          77 HGKITSLD   84 (203)
Q Consensus        77 ~~~v~~~~   84 (203)
                      .+.+++++
T Consensus       156 PeRvYa~D  163 (347)
T KOG0647|consen  156 PERVYAAD  163 (347)
T ss_pred             cceeeehh
Confidence            65555544

>KOG0294|consensus

Probab=99.82  E-value=5.2e-18  Score=125.40  Aligned_cols=176  Identities=18%  Similarity=0.261  Sum_probs=128.4

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCe---EEecCcCceEEEEeCCC--CEEEEecCCCeEEEEECCCceEEEeeeeC-CeE
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTET---KFAGSSCNDLVTYDGAG--TTIISGHFDKKVRFWDFRAEEKVRDIELH-GKI   80 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~~~~~~~~~~~~~--~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v   80 (203)
                      -++.+++|||.|.+|+|||++....   ...+......+.|.+.-  ++|+||+.||.|.||+....++++++..| ++|
T Consensus        51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V  130 (362)
T KOG0294|consen   51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV  130 (362)
T ss_pred             ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence            4788999999999999999986432   22233333334444332  39999999999999999999999998876 568


Q ss_pred             EEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCc--EEEEeecCe
Q psy8891          81 TSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGK--YYFVFAEGF  158 (203)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~  158 (203)
                      +.++++|                   .|+..++.+.|+.+++||+-.|+.....++....+.+.+.+..  +++......
T Consensus       131 t~lsiHP-------------------S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i  191 (362)
T KOG0294|consen  131 TDLSIHP-------------------SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKI  191 (362)
T ss_pred             ceeEecC-------------------CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEE
Confidence            8888876                   4568899999999999999988877777777666666666543  333322221


Q ss_pred             eEE--------------eeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         159 KVQ--------------CDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       159 ~~~--------------~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      .+.              .... ++...++.+|++|..|+.|++||.+...+...+.+|
T Consensus       192 ~i~q~d~A~v~~~i~~~~r~l-~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH  248 (362)
T KOG0294|consen  192 DIYQLDNASVFREIENPKRIL-CATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAH  248 (362)
T ss_pred             EEEecccHhHhhhhhccccce-eeeecCCceEEEecCCceEEEeccCCCccceeeecc
Confidence            111              1112 222347889999999999999999988888877665

>KOG1407|consensus

Probab=99.82  E-value=4.5e-18  Score=122.93  Aligned_cols=171  Identities=22%  Similarity=0.282  Sum_probs=125.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEE
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLD   84 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~   84 (203)
                      ++...++|+|.|.+|++||.+.+++...  ....+-...|+|++++++.++.|..|...|.+.-+...+.+..-.+.-+.
T Consensus        75 ~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~  154 (313)
T KOG1407|consen   75 KHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEIS  154 (313)
T ss_pred             CCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeee
Confidence            4667899999999999999998775432  22334456899999999999999999999998776554443333344444


Q ss_pred             ecCCCceEE-----------------------EecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEE
Q psy8891          85 LSKGTETKF-----------------------AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKIT  141 (203)
Q Consensus        85 ~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~  141 (203)
                      ++.+.+.++                       +....+.++.|+|+|+++|+|+.|-.+.+||+..--|.+.+.-..   
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld---  231 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD---  231 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc---
Confidence            443333322                       223334567899999999999999999999998655655543211   


Q ss_pred             EEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         142 SLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                          .++..+.|+-+|++|++||+|..|-|=++.+|..+..++
T Consensus       232 --------------------wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  232 --------------------WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             --------------------CceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence                                122345577799999999999999999999998887764

>KOG0313|consensus

Probab=99.82  E-value=9.2e-19  Score=132.06  Aligned_cols=146  Identities=25%  Similarity=0.473  Sum_probs=104.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE---EEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~---~~~~~~   76 (203)
                      +|-|++ ...++|+|+|.+||.||+.++.....  ....-..+.+.|..++|++|+.|..||+||.|.+.-   .+++..
T Consensus       265 ~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g  343 (423)
T KOG0313|consen  265 SVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG  343 (423)
T ss_pred             eEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec
Confidence            455665 78899999999999999998665432  223333456677888999999999999999987642   233444


Q ss_pred             C-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEEecc-ceEEEEEecCCcEEEE
Q psy8891          77 H-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH-GKITSLDLSKGKYYFV  153 (203)
Q Consensus        77 ~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~-~~~~~~~~-~~v~~~~~~~~~~~~~  153 (203)
                      | .-|.++.++|..                  ..+|+++++|+++++||+|+.. ++-.+..| .+|.++++        
T Consensus       344 H~nwVssvkwsp~~------------------~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW--------  397 (423)
T KOG0313|consen  344 HKNWVSSVKWSPTN------------------EFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDW--------  397 (423)
T ss_pred             chhhhhheecCCCC------------------ceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEec--------
Confidence            4 335555555532                  2579999999999999999766 55555443 22333332        


Q ss_pred             eecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         154 FAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                                       .++..+++|+.|.+++++.-.
T Consensus       398 -----------------~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  398 -----------------NEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             -----------------cCCceEEeccCcceEEEeccc
Confidence                             256789999999999999743

>KOG0292|consensus

Probab=99.81  E-value=6.8e-19  Score=144.93  Aligned_cols=148  Identities=17%  Similarity=0.317  Sum_probs=123.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      .++|+|.--+++|+=-.|.|++||.+-+..+   ..+..++..+.|.|+...++|||+|-+||||+..+..++.++.+| 
T Consensus        14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl   93 (1202)
T KOG0292|consen   14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL   93 (1202)
T ss_pred             ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence            3689999999999999999999999865543   234445566788898899999999999999999999999888777 


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecC
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEG  157 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  157 (203)
                      .-|+.+.|++.                   -.+|+|+|+|.+|||||..+++++..+..|.+-                 
T Consensus        94 DYVRt~~FHhe-------------------yPWIlSASDDQTIrIWNwqsr~~iavltGHnHY-----------------  137 (1202)
T KOG0292|consen   94 DYVRTVFFHHE-------------------YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY-----------------  137 (1202)
T ss_pred             ceeEEeeccCC-------------------CceEEEccCCCeEEEEeccCCceEEEEecCceE-----------------
Confidence            45777777653                   358999999999999999999998888776531                 


Q ss_pred             eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         158 FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                            +.++.|.|..+.++|+|.|.+||+||+.
T Consensus       138 ------VMcAqFhptEDlIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen  138 ------VMCAQFHPTEDLIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             ------EEeeccCCccceEEEecccceEEEEeec
Confidence                  2356688888999999999999999975

>KOG0308|consensus

Probab=99.81  E-value=5.6e-19  Score=141.04  Aligned_cols=178  Identities=19%  Similarity=0.309  Sum_probs=121.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCeEE------ecCcCceE---EEEeCCCCEEEEecCCCeEEEEECCCc--eEEEeee
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTETKF------AGSSCNDL---VTYDGAGTTIISGHFDKKVRFWDFRAE--EKVRDIE   75 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~~~------~~~~~~~~---~~~~~~~~~l~s~~~D~~i~vwd~~~~--~~~~~~~   75 (203)
                      |++++|+|||.||.|++|+.......+      .-..+.+.   +..-.+++.|+|+|.|-+||+|+...+  -+..++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            466679999999999999987532211      11111111   123356789999999999999998776  3555665


Q ss_pred             eC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce--EEEE------e----ccceEEE
Q psy8891          76 LH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--VRDI------E----LHGKITS  142 (203)
Q Consensus        76 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~--~~~~------~----~~~~v~~  142 (203)
                      .| .-|.+++..                  .++...++|||-|+.|.+||+.++..  ...+      .    ....+.+
T Consensus       115 ~H~DYVkcla~~------------------ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS  176 (735)
T KOG0308|consen  115 THKDYVKCLAYI------------------AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS  176 (735)
T ss_pred             cccchheeeeec------------------ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence            55 446666651                  22345899999999999999987632  2111      1    1234777


Q ss_pred             EEecCCcEEEEeecCe---e---------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         143 LDLSKGKYYFVFAEGF---K---------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       143 ~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      ++..+....++.+.-.   +               +..++..+..+.||..++|+|+||+|++||+.+.+++.++..|
T Consensus       177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH  254 (735)
T KOG0308|consen  177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH  254 (735)
T ss_pred             eecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence            8887777666554211   0               1123444566789999999999999999999999999998655

>KOG0274|consensus

Probab=99.81  E-value=5.4e-18  Score=138.42  Aligned_cols=148  Identities=27%  Similarity=0.459  Sum_probs=116.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCeEEe---cC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC-eEEEE
Q psy8891           9 PTKVVSGSCDRTLKIWDLRSTETKFA---GS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSL   83 (203)
Q Consensus         9 ~~~l~t~s~D~~v~lwdl~~~~~~~~---~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~-~v~~~   83 (203)
                      ...+.+++.|.+|++||..+......   ++ .....+.+..-+..|++|+.|.++||||..++++++.+.+|. .+.++
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL  297 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence            56789999999999999987654322   22 222334444336799999999999999999999999998764 45555


Q ss_pred             EecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeecCeeEEe
Q psy8891          84 DLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQC  162 (203)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~  162 (203)
                      ...+                     ..+++|++|.+|++||++++.+++.+..+ ..|.++..                 
T Consensus       298 ~~~~---------------------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~-----------------  339 (537)
T KOG0274|consen  298 TIDP---------------------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL-----------------  339 (537)
T ss_pred             EccC---------------------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe-----------------
Confidence            5433                     47888999999999999999998887743 34544332                 


Q ss_pred             eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                               ++.++++|+.|++|++||+.++++++++++|+
T Consensus       340 ---------~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~  371 (537)
T KOG0274|consen  340 ---------DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT  371 (537)
T ss_pred             ---------cCCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence                     36789999999999999999999999999974

>KOG0973|consensus

Probab=99.81  E-value=1.6e-18  Score=144.89  Aligned_cols=180  Identities=21%  Similarity=0.294  Sum_probs=130.3

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCC----------CCe----------EEecCc-CceEEEEeCCCCEEEEecCCCe
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS----------TET----------KFAGSS-CNDLVTYDGAGTTIISGHFDKK   59 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~----------~~~----------~~~~~~-~~~~~~~~~~~~~l~s~~~D~~   59 (203)
                      .|++|+|||++||+||.|+.|.+|+...          +..          .+.++. ...-+.|+|++.+|+|+|.|++
T Consensus        73 ~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns  152 (942)
T KOG0973|consen   73 NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS  152 (942)
T ss_pred             eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccce
Confidence            4899999999999999999999999872          000          011111 1223678999999999999999


Q ss_pred             EEEEECCCceEEEeeeeCC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-
Q psy8891          60 VRFWDFRAEEKVRDIELHG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-  137 (203)
Q Consensus        60 i~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-  137 (203)
                      |-||+.++.+.+..+..|. .|..                   +.|+|-|+++++-+.|++|++|+..+....+.+..+ 
T Consensus       153 Viiwn~~tF~~~~vl~~H~s~VKG-------------------vs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  153 VIIWNAKTFELLKVLRGHQSLVKG-------------------VSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             EEEEccccceeeeeeecccccccc-------------------eEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence            9999999998888887663 3433                   357889999999999999999998776666655433 


Q ss_pred             ------ceEEEEEecCCcEEEEeecC---------------ee-------EEeeeEEEEEEc-------------CCC--
Q psy8891         138 ------GKITSLDLSKGKYYFVFAEG---------------FK-------VQCDFTRAVFVV-------------DDD--  174 (203)
Q Consensus       138 ------~~v~~~~~~~~~~~~~~~~~---------------~~-------~~~~~~~~~~~~-------------~~~--  174 (203)
                            ....-++++|+..+++....               ..       +......+.|+|             ++.  
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence                  33566778887766653221               11       122344566665             121  


Q ss_pred             --EEEEecCCCcEEEEeCCCceeeeee
Q psy8891         175 --YVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       175 --~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                        .+|+||.|++|-||.....+++-++
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RPl~vi  320 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRPLFVI  320 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCchhhh
Confidence              5889999999999998777776554

>KOG0273|consensus

Probab=99.81  E-value=1.4e-18  Score=134.16  Aligned_cols=181  Identities=23%  Similarity=0.352  Sum_probs=131.0

Q ss_pred             ceEEcCCCC-EEEEEeCCCcEEEEeCCC------CCeEEe------cC-----cCceEEEEeCCCCEEEEecCCCeEEEE
Q psy8891           2 CAKFLGDPT-KVVSGSCDRTLKIWDLRS------TETKFA------GS-----SCNDLVTYDGAGTTIISGHFDKKVRFW   63 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~------~~~~~~------~~-----~~~~~~~~~~~~~~l~s~~~D~~i~vw   63 (203)
                      +++|+|-.. .+++|+.|-+.|+|++..      .+..+.      +.     .....+.|+.+|..|++|+.||.+|||
T Consensus       183 ~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw  262 (524)
T KOG0273|consen  183 ICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIW  262 (524)
T ss_pred             EEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEE
Confidence            688999776 899999999999999974      111111      11     123457888899999999999999999


Q ss_pred             ECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceE-E
Q psy8891          64 DFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKI-T  141 (203)
Q Consensus        64 d~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v-~  141 (203)
                      +.. +..+.++..| ++|.++.+++                   .|.+|++++.|+++-+||..+++....++++... .
T Consensus       263 ~~~-G~l~~tl~~HkgPI~slKWnk-------------------~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l  322 (524)
T KOG0273|consen  263 NKD-GNLISTLGQHKGPIFSLKWNK-------------------KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL  322 (524)
T ss_pred             ecC-chhhhhhhccCCceEEEEEcC-------------------CCCEEEeccCCccEEEEeccCceEEEeeeeccCCcc
Confidence            964 4445555443 7788776554                   5679999999999999999999988888877543 2


Q ss_pred             EEEec---------CCcEEEEeecC--------eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         142 SLDLS---------KGKYYFVFAEG--------FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       142 ~~~~~---------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      .+.+-         ++..+++..-+        ..+...+..+.+.|.+.+|+|+|.|++++||..........+.+|
T Consensus       323 DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H  400 (524)
T KOG0273|consen  323 DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH  400 (524)
T ss_pred             ceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh
Confidence            23321         22222222111        113345677889999999999999999999998888777777655

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.80  E-value=1.5e-16  Score=121.89  Aligned_cols=199  Identities=16%  Similarity=0.220  Sum_probs=133.4

Q ss_pred             ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEE-EecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +++|+|+++.+ ++++.|+.|++||+.+++...  ........+.++|+++.++ +++.|+.+++||+++.+.+..+...
T Consensus        35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~  114 (300)
T TIGR03866        35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG  114 (300)
T ss_pred             ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence            47899999976 677889999999998765432  1222223467888888665 5567899999999988777666544


Q ss_pred             CeEEEEEecCCCceEEEecCCc-----------------------eEEEEcCCCCEEE-EeeCCCeEEEEECCCCceEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCN-----------------------DLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVRD  133 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~-s~s~d~~i~iWd~~~~~~~~~  133 (203)
                      ..+..+.++|++..++.+....                       ....|+++|+.|+ ++..++.|++||+.+++.+..
T Consensus       115 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~  194 (300)
T TIGR03866       115 VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK  194 (300)
T ss_pred             CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence            4567778888776655433211                       1245788998885 445699999999998887665


Q ss_pred             Eeccc--------eEEEEEecCCcEE-EEeec--C---------eeE------EeeeEEEEEEcCCCEEEEe-cCCCcEE
Q psy8891         134 IELHG--------KITSLDLSKGKYY-FVFAE--G---------FKV------QCDFTRAVFVVDDDYVAVG-SIDGNIY  186 (203)
Q Consensus       134 ~~~~~--------~v~~~~~~~~~~~-~~~~~--~---------~~~------~~~~~~~~~~~~~~~l~s~-s~d~~v~  186 (203)
                      +..+.        ....+.++++... ++...  .         ...      ......+.++|++++|+++ +.++.|+
T Consensus       195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~  274 (300)
T TIGR03866       195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVS  274 (300)
T ss_pred             eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence            54321        1223444444322 22110  0         011      0123356688999999886 4699999


Q ss_pred             EEeCCCceeeeeec
Q psy8891         187 VWDCNTEQVEAVLK  200 (203)
Q Consensus       187 ~wd~~~~~~~~~~~  200 (203)
                      +||+++++++++++
T Consensus       275 v~d~~~~~~~~~~~  288 (300)
T TIGR03866       275 VIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCcEEEEEE
Confidence            99999999998886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0299|consensus

Probab=99.80  E-value=5.2e-18  Score=130.66  Aligned_cols=184  Identities=22%  Similarity=0.330  Sum_probs=122.3

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE------------------Ee---cCcCceEEEEeCCCCEEEEecCCCe
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK------------------FA---GSSCNDLVTYDGAGTTIISGHFDKK   59 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~------------------~~---~~~~~~~~~~~~~~~~l~s~~~D~~   59 (203)
                      .||+++||+++.+++|.|++|.-|++.+++..                  ..   +...+-.++.++|+++|++|+.|..
T Consensus       146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~  225 (479)
T KOG0299|consen  146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRH  225 (479)
T ss_pred             eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCce
Confidence            37899999999999999999999998764311                  00   0111233578899999999999999


Q ss_pred             EEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-
Q psy8891          60 VRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-  137 (203)
Q Consensus        60 i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-  137 (203)
                      |.|||.++.++++.+..| +.|.+++|-....                   .+++++.|++|++|++.....+.++-.| 
T Consensus       226 v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~-------------------~lys~s~Drsvkvw~~~~~s~vetlyGHq  286 (479)
T KOG0299|consen  226 VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS-------------------ELYSASADRSVKVWSIDQLSYVETLYGHQ  286 (479)
T ss_pred             EEEecCcccchhhcccccccceeeeeeecCcc-------------------ceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence            999999999999887766 6788888776544                   5777777777777776543332222111 


Q ss_pred             ceEEEEEecCCc----------E--EEEeecC----eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         138 GKITSLDLSKGK----------Y--YFVFAEG----FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       138 ~~v~~~~~~~~~----------~--~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      ..|.+++.....          .  ++-..+.    +.-......++..-+...|+|||.||.|.+|++-+.+++.+.+.
T Consensus       287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~  366 (479)
T KOG0299|consen  287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRL  366 (479)
T ss_pred             cceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeec
Confidence            123322221110          0  0000000    00011122223334678999999999999999999999999887


Q ss_pred             CC
Q psy8891         202 MH  203 (203)
Q Consensus       202 ~~  203 (203)
                      +|
T Consensus       367 AH  368 (479)
T KOG0299|consen  367 AH  368 (479)
T ss_pred             cc
Confidence            76

>KOG0268|consensus

Probab=99.80  E-value=5.5e-19  Score=132.68  Aligned_cols=190  Identities=18%  Similarity=0.250  Sum_probs=131.5

Q ss_pred             cCCC-CEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEE
Q psy8891           6 LGDP-TKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKIT   81 (203)
Q Consensus         6 ~~~~-~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~   81 (203)
                      +|+. ..++|||.||.|++||+....+.   ..+.....-+++..  +.++|+|.|++||.|.+.. .+.+++-..+.+.
T Consensus        75 hp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~  151 (433)
T KOG0268|consen   75 HPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYL  151 (433)
T ss_pred             CcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecccccc
Confidence            4444 56899999999999999874432   22222233344443  7899999999999998765 3566666555555


Q ss_pred             EEEecCCCceEEEecC---------------------CceEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEEeccce
Q psy8891          82 SLDLSKGTETKFAGSS---------------------CNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDIELHGK  139 (203)
Q Consensus        82 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~  139 (203)
                      .++.+.......+...                     ....+.|+|.. .+|++|+.|+.|.++|++.+.+++.+.+...
T Consensus       152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR  231 (433)
T KOG0268|consen  152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR  231 (433)
T ss_pred             ccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc
Confidence            5555443332222111                     11223455543 4788888999999999999999999988888


Q ss_pred             EEEEEecCCcEEEEeecCe---------------e----EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         140 ITSLDLSKGKYYFVFAEGF---------------K----VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       140 v~~~~~~~~~~~~~~~~~~---------------~----~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                      .+.++++|..+.|+.+.+-               .    +...+..+.|+|.|+-|++||.|.+||||..+.+.-..+
T Consensus       232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi  309 (433)
T KOG0268|consen  232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI  309 (433)
T ss_pred             ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh
Confidence            8889999877766654321               1    112345677999999999999999999999987654443

>KOG4283|consensus

Probab=99.79  E-value=5.2e-18  Score=124.66  Aligned_cols=178  Identities=20%  Similarity=0.331  Sum_probs=121.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCe--------EE----ecCc-------CceEEEEeCCCCEEEEecCCCeEEEEECCCc
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTET--------KF----AGSS-------CNDLVTYDGAGTTIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~--------~~----~~~~-------~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~   68 (203)
                      .|+++++|++||.|.+||++....        +.    ..++       ...+..++-|...+.|+|.|.++||||..+.
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl  134 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL  134 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence            678999999999999999975220        11    1011       1122345557779999999999999999998


Q ss_pred             eEEEeeeeCCeEEEEEecCC---CceEEEecCC-----------------------ceEEEEcCCC-CEEEEeeCCCeEE
Q psy8891          69 EKVRDIELHGKITSLDLSKG---TETKFAGSSC-----------------------NDLVTYDGAG-TTIISGHFDKKVR  121 (203)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~-----------------------~~~~~~~~~~-~~l~s~s~d~~i~  121 (203)
                      +....+...+.|++-+++|=   ...+.+|...                       ...+.|+|.. ..|++|+.|++||
T Consensus       135 Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir  214 (397)
T KOG4283|consen  135 QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR  214 (397)
T ss_pred             eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence            88878887777777776652   1122222111                       1236788865 5689999999999


Q ss_pred             EEECCCC-ceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         122 FWDFRAE-EKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       122 iWd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      +||+|.. .+...+..+...         ..........+...+..+++..++.++++++.|..+++|+...|+
T Consensus       215 lWDiRrasgcf~~lD~hn~k---------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  215 LWDIRRASGCFRVLDQHNTK---------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             EEEeecccceeEEeecccCc---------cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            9999854 555555544321         111111122334456667888899999999999999999988765

>KOG0310|consensus

Probab=99.79  E-value=2.9e-17  Score=127.37  Aligned_cols=147  Identities=22%  Similarity=0.342  Sum_probs=107.0

Q ss_pred             eEEcCCC-CEEEEEeCCCcEEEEeCCCCCeEEecCcCc---eEEEEeC-CCCEEEEecCCCeEEEEECCCc-eEEEeeee
Q psy8891           3 AKFLGDP-TKVVSGSCDRTLKIWDLRSTETKFAGSSCN---DLVTYDG-AGTTIISGHFDKKVRFWDFRAE-EKVRDIEL   76 (203)
Q Consensus         3 ~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~---~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~-~~~~~~~~   76 (203)
                      +.|+|++ +.|++||.|+.+++||+.+.........+.   ....+.| ++..++|||+||+||+||++.. ..+.++..
T Consensus       116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh  195 (487)
T KOG0310|consen  116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH  195 (487)
T ss_pred             EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence            5677755 578899999999999998755432222222   2233444 5568999999999999999987 67778877


Q ss_pred             CCeEEEEEecCCCceEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE
Q psy8891          77 HGKITSLDLSKGTETKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD  133 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~  133 (203)
                      ..+|..+-+-|.+..++.+...                       .++..+..+++.|+|++-|+.|+++|+.+.+.++.
T Consensus       196 g~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s  275 (487)
T KOG0310|consen  196 GCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS  275 (487)
T ss_pred             CCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEe
Confidence            7778887777776555432221                       22345566778899999999999999888888888


Q ss_pred             EeccceEEEEEecCCc
Q psy8891         134 IELHGKITSLDLSKGK  149 (203)
Q Consensus       134 ~~~~~~v~~~~~~~~~  149 (203)
                      +..+++|-+++++++.
T Consensus       276 ~~~~~pvLsiavs~dd  291 (487)
T KOG0310|consen  276 WKYPGPVLSIAVSPDD  291 (487)
T ss_pred             eecccceeeEEecCCC
Confidence            8888888777766533

>KOG0308|consensus

Probab=99.78  E-value=1.4e-17  Score=133.13  Aligned_cols=163  Identities=25%  Similarity=0.409  Sum_probs=119.1

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCeEE-----ecCcCceEEEE-eCCCCEEEEecCCCeEEEEECCCceE--EEeee--
Q psy8891           6 LGDPTKVVSGSCDRTLKIWDLRSTETKF-----AGSSCNDLVTY-DGAGTTIISGHFDKKVRFWDFRAEEK--VRDIE--   75 (203)
Q Consensus         6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~~-----~~~~~~~~~~~-~~~~~~l~s~~~D~~i~vwd~~~~~~--~~~~~--   75 (203)
                      ..+++.|+|+|.|.+||+|+...+....     .+..-...+++ .++...++|||.|+.|.+||+..+..  +..+.  
T Consensus        82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~  161 (735)
T KOG0308|consen   82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV  161 (735)
T ss_pred             hcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence            4578899999999999999987653211     11111233455 56778999999999999999987732  22221  


Q ss_pred             --------eCCeEEEEEecCCCceEEEecCCceEEE-----------------------EcCCCCEEEEeeCCCeEEEEE
Q psy8891          76 --------LHGKITSLDLSKGTETKFAGSSCNDLVT-----------------------YDGAGTTIISGHFDKKVRFWD  124 (203)
Q Consensus        76 --------~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~s~s~d~~i~iWd  124 (203)
                              ...+|++++.++.+..++.|.....+..                       .++||+.++|+|.|++||+||
T Consensus       162 t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd  241 (735)
T KOG0308|consen  162 TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD  241 (735)
T ss_pred             ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence                    1246999999988766666655544444                       456799999999999999999


Q ss_pred             CCCCceEEEEeccce-EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         125 FRAEEKVRDIELHGK-ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       125 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      +...+|+.++..|.. +-++..+                        |+=.++++|+.|++|..=|+++
T Consensus       242 LgqQrCl~T~~vH~e~VWaL~~~------------------------~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  242 LGQQRCLATYIVHKEGVWALQSS------------------------PSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             ccccceeeeEEeccCceEEEeeC------------------------CCcceEEecCCCCcEEecccCC
Confidence            999999998877754 3332222                        3446799999999999999886

>KOG2096|consensus

Probab=99.78  E-value=2.2e-16  Score=117.29  Aligned_cols=186  Identities=20%  Similarity=0.346  Sum_probs=111.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe-----E---E---------ecCcCceE-----------------------
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET-----K---F---------AGSSCNDL-----------------------   41 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-----~---~---------~~~~~~~~-----------------------   41 (203)
                      +++|+.||+.|+|++.|++||+|+++.-+.     +   .         ....+..+                       
T Consensus        91 ~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~  170 (420)
T KOG2096|consen   91 DVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSG  170 (420)
T ss_pred             eeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCC
Confidence            689999999999999999999999863110     0   0         00000000                       


Q ss_pred             ----------------------EEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEe---
Q psy8891          42 ----------------------VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAG---   95 (203)
Q Consensus        42 ----------------------~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~---   95 (203)
                                            +.....+.+++|++.|.+|.+||++ ++.+.++... ...+..+.+|++.-+...   
T Consensus       171 ~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT  249 (420)
T KOG2096|consen  171 SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT  249 (420)
T ss_pred             CcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC
Confidence                                  0112335689999999999999998 6665554321 111222233333222211   


Q ss_pred             ----------------------------cCCceEEEEcCCCCEEEEeeCCCeEEEEECC----CCc---eEEEEec--c-
Q psy8891          96 ----------------------------SSCNDLVTYDGAGTTIISGHFDKKVRFWDFR----AEE---KVRDIEL--H-  137 (203)
Q Consensus        96 ----------------------------~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~----~~~---~~~~~~~--~-  137 (203)
                                                  .......+|+++++.++++|.||++|+||..    .++   .+++...  + 
T Consensus       250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a  329 (420)
T KOG2096|consen  250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHA  329 (420)
T ss_pred             CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhh
Confidence                                        1222346899999999999999999999964    111   1222211  0 


Q ss_pred             --ceEEEEEecCCcEEEEee-----------cCe-------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         138 --GKITSLDLSKGKYYFVFA-----------EGF-------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       138 --~~v~~~~~~~~~~~~~~~-----------~~~-------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                        +....++++|....++..           .+.       .....++.+.|+++|++++|++ |+.+++..
T Consensus       330 ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  330 AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence              112234444444333322           221       1234677888999999999976 67777775

>KOG0264|consensus

Probab=99.78  E-value=9.2e-18  Score=128.94  Aligned_cols=149  Identities=21%  Similarity=0.381  Sum_probs=105.7

Q ss_pred             ceEEcCCC-CEEEEEeCCCcEEEEeCCCCCe---------EEecC-cCceEEEEeC-CCCEEEEecCCCeEEEEECCC--
Q psy8891           2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTET---------KFAGS-SCNDLVTYDG-AGTTIISGHFDKKVRFWDFRA--   67 (203)
Q Consensus         2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~---------~~~~~-~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~--   67 (203)
                      .+.|++.. ..|++|+.|++|++||+.....         .+.++ ..+.-++|.+ +.+.+.|++.|+.+.|||+|+  
T Consensus       182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~  261 (422)
T KOG0264|consen  182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT  261 (422)
T ss_pred             ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence            34566544 4799999999999999975221         12222 2233355554 556899999999999999995  


Q ss_pred             ceEEEeeee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEeccc-eEEEEE
Q psy8891          68 EEKVRDIEL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDIELHG-KITSLD  144 (203)
Q Consensus        68 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~~~~~~~~~~-~v~~~~  144 (203)
                      .++.+.... .+++.+++|+|..                  +.+|||||.|++|++||+|+- .+++.++.|. .|..+.
T Consensus       262 ~~~~~~~~ah~~~vn~~~fnp~~------------------~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~  323 (422)
T KOG0264|consen  262 SKPSHSVKAHSAEVNCVAFNPFN------------------EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVE  323 (422)
T ss_pred             CCCcccccccCCceeEEEeCCCC------------------CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEE
Confidence            444444444 4679999998854                  358999999999999999963 3455565543 354444


Q ss_pred             ecCCcEEEEeecCeeEEeeeEEEEEEcC-CCEEEEecCCCcEEEEeCCC
Q psy8891         145 LSKGKYYFVFAEGFKVQCDFTRAVFVVD-DDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~v~~wd~~~  192 (203)
                      ++                        |. ...|+|++.|+.+.+||+..
T Consensus       324 WS------------------------Ph~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  324 WS------------------------PHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             eC------------------------CCCCceeEecccCCcEEEEeccc
Confidence            44                        44 35789999999999999874

>KOG0772|consensus

Probab=99.78  E-value=5.2e-18  Score=132.58  Aligned_cols=192  Identities=19%  Similarity=0.252  Sum_probs=131.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---EE-----ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET---KF-----AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---~~-----~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~   73 (203)
                      +.++.|.|.+|+|||.|-+|++||+..-..   .+     ...+....+.|++.++.++..+-...++|+|-...+....
T Consensus       172 al~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~  251 (641)
T KOG0772|consen  172 ALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEF  251 (641)
T ss_pred             EeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeee
Confidence            467889999999999999999999975211   11     1123345678999999888888888999999654444455


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCC-CCEEEEeeCCCeEEEEECCCCceE-EEEe---cc---ceEEEEEe
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA-GTTIISGHFDKKVRFWDFRAEEKV-RDIE---LH---GKITSLDL  145 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~i~iWd~~~~~~~-~~~~---~~---~~v~~~~~  145 (203)
                      ..++.-|..+...+++..-++      ..+|+|. ...++|++.|+++||||+...... +.+.   ..   ..+.+..+
T Consensus       252 ~KGDQYI~Dm~nTKGHia~lt------~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~  325 (641)
T KOG0772|consen  252 SKGDQYIRDMYNTKGHIAELT------CGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW  325 (641)
T ss_pred             eccchhhhhhhccCCceeeee------ccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence            556655666655554432222      2457776 468999999999999999754322 2222   11   23566667


Q ss_pred             cCCcEEEEeecC-----------------------eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC-ceeeeee
Q psy8891         146 SKGKYYFVFAEG-----------------------FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT-EQVEAVL  199 (203)
Q Consensus       146 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~-~~~~~~~  199 (203)
                      +++...++.+..                       ......++++.|+++|++|+|-+.|+++++||+++ .+++.+.
T Consensus       326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence            666554432211                       00122678899999999999999999999999975 4555443

>KOG0299|consensus

Probab=99.78  E-value=1.1e-17  Score=128.94  Aligned_cols=181  Identities=17%  Similarity=0.284  Sum_probs=118.7

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +|++.++|+++|+||+.|..|.|||.++.+...  .++ ..+..++|-...+.|+|++.|+++++|+++...-+.++-.|
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH  285 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH  285 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence            478899999999999999999999999865432  222 22333556666779999999999999999876554444333


Q ss_pred             -CeEEEEEecCCCceEEEecC----------------------CceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891          78 -GKITSLDLSKGTETKFAGSS----------------------CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                       ..|..++.......+-+|..                      ...+++|= +...+++||.||.|.+|++...+++...
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEe
Confidence             34544443322221111111                      12223332 2347899999999999999888887766


Q ss_pred             eccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         135 ELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       135 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                      .....+....           ........++.++..|..+++++||.+|.||+|.++.|
T Consensus       365 ~~AHgv~~~~-----------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  365 RLAHGVIPEL-----------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eccccccCCc-----------cccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            5433322110           00011124456667788899999999999999998876

>KOG0289|consensus

Probab=99.78  E-value=2.6e-17  Score=126.21  Aligned_cols=155  Identities=19%  Similarity=0.344  Sum_probs=117.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      .+.|+|+...++++|.|..|++|.........   .+...+..+...|.+.+|++++.|++....|++++..+...... 
T Consensus       266 ~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~  345 (506)
T KOG0289|consen  266 SVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET  345 (506)
T ss_pred             EEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence            46789999999999999999999986533221   22223344556789999999999999999999999876443321 


Q ss_pred             --CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEe
Q psy8891          78 --GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVF  154 (203)
Q Consensus        78 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~  154 (203)
                        ..+.+.                   .|+|||-++.+|..|+.|+|||+.++.....|..| ++|+.+.++        
T Consensus       346 s~v~~ts~-------------------~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs--------  398 (506)
T KOG0289|consen  346 SDVEYTSA-------------------AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS--------  398 (506)
T ss_pred             ccceeEEe-------------------eEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec--------
Confidence              224444                   45567779999999999999999988776667665 346555554        


Q ss_pred             ecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         155 AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                                      -+|=+|++++.|+.|++||++.-+..+++
T Consensus       399 ----------------ENGY~Lat~add~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  399 ----------------ENGYWLATAADDGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             ----------------cCceEEEEEecCCeEEEEEehhhccccee
Confidence                            45557899999999999999977766665

>KOG0316|consensus

Probab=99.78  E-value=2.4e-17  Score=117.72  Aligned_cols=178  Identities=24%  Similarity=0.423  Sum_probs=110.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCc--eEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE--EKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~--~~~~~~~~   76 (203)
                      .++.+.|+..+++|+.|+.|.+||+.+++..  +.++ ...+.+.|.-+...++|||.|.++|+||-++.  ++++.+..
T Consensus        64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde  143 (307)
T KOG0316|consen   64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE  143 (307)
T ss_pred             eccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh
Confidence            3566789999999999999999999998753  3332 33566788877889999999999999998764  44544432


Q ss_pred             -CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce--------EEEEeccceEEEE---E
Q psy8891          77 -HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--------VRDIELHGKITSL---D  144 (203)
Q Consensus        77 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~--------~~~~~~~~~v~~~---~  144 (203)
                       ...|.+++++.                     +.|++||.||++|.+|+|.|+.        +..+.+...-++.   .
T Consensus       144 a~D~V~Si~v~~---------------------heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~  202 (307)
T KOG0316|consen  144 AKDGVSSIDVAE---------------------HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS  202 (307)
T ss_pred             hcCceeEEEecc---------------------cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee
Confidence             24455555543                     4667777777777777766543        2222211110000   0


Q ss_pred             ecCCcEEEEeecC--------eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         145 LSKGKYYFVFAEG--------FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       145 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +.....++....|        .+...--..+++......+++||+||.|++||+..+..+..++
T Consensus       203 l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~  266 (307)
T KOG0316|consen  203 LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS  266 (307)
T ss_pred             ccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence            0110111111111        0001111234455556789999999999999998877776665

>KOG0641|consensus

Probab=99.77  E-value=2.4e-16  Score=112.21  Aligned_cols=180  Identities=24%  Similarity=0.406  Sum_probs=124.6

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe-------E-----------------------Ee-cC-------------
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET-------K-----------------------FA-GS-------------   36 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-------~-----------------------~~-~~-------------   36 (203)
                      +|++|+|+|+.++|||.|++||+--.....+       .                       .. ..             
T Consensus        93 yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~  172 (350)
T KOG0641|consen   93 YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR  172 (350)
T ss_pred             EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence            5899999999999999999999874321100       0                       00 00             


Q ss_pred             ---------cCceEE-EEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcC
Q psy8891          37 ---------SCNDLV-TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDG  106 (203)
Q Consensus        37 ---------~~~~~~-~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (203)
                               +...++ -++.++..++||+.|.+||.||++-..+++++..+       ++..+-    .++....++.+|
T Consensus       173 g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~-------~~~~gl----essavaav~vdp  241 (350)
T KOG0641|consen  173 GQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND-------FHDGGL----ESSAVAAVAVDP  241 (350)
T ss_pred             CCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCc-------ccCCCc----ccceeEEEEECC
Confidence                     000111 23556789999999999999999988877665321       111110    011223456788


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeecC---ee---------------E----Eee
Q psy8891         107 AGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEG---FK---------------V----QCD  163 (203)
Q Consensus       107 ~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~---~~---------------~----~~~  163 (203)
                      .|+.|++|-.|....++|++.+++++.+-.+ ..|.++-++++..++....-   .+               +    ...
T Consensus       242 sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk  321 (350)
T KOG0641|consen  242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK  321 (350)
T ss_pred             CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence            9999999999999999999999999888766 45899999988766654321   00               0    112


Q ss_pred             eEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         164 FTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       164 ~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ...+...|+.--|++.+.|.++.+|-++
T Consensus       322 ~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  322 AIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEEecCccceeeeccCcceEEEeccC
Confidence            3445667787789999999999999865

>KOG1446|consensus

Probab=99.77  E-value=2e-16  Score=116.92  Aligned_cols=135  Identities=17%  Similarity=0.323  Sum_probs=103.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce--EEEeeee--
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE--KVRDIEL--   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~--~~~~~~~--   76 (203)
                      +++-+|-+..++|+|.|++||+||++..++.. .......+.+++|+|-.+|.+.....|++||+|.-+  +..++..  
T Consensus       105 sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~  184 (311)
T KOG1446|consen  105 SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD  184 (311)
T ss_pred             EEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC
Confidence            34568888999999999999999999766532 122334568999999888888877799999998642  3333332  


Q ss_pred             --CCeEEEEEecCCCceEEEecCCce--------------------------EEEEcCCCCEEEEeeCCCeEEEEECCCC
Q psy8891          77 --HGKITSLDLSKGTETKFAGSSCND--------------------------LVTYDGAGTTIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        77 --~~~v~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~  128 (203)
                        ..++..+.|++++..++.....+.                          -.+|+|||+.+++++.||+|.+|+++++
T Consensus       185 ~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  185 NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence              357899999999988765432221                          2578999999999999999999999999


Q ss_pred             ceEEEEec
Q psy8891         129 EKVRDIEL  136 (203)
Q Consensus       129 ~~~~~~~~  136 (203)
                      .....+..
T Consensus       265 ~~v~~~~~  272 (311)
T KOG1446|consen  265 KKVAVLRG  272 (311)
T ss_pred             cEeeEecC
Confidence            87776654

>KOG0302|consensus

Probab=99.76  E-value=1.8e-17  Score=125.12  Aligned_cols=149  Identities=21%  Similarity=0.442  Sum_probs=102.6

Q ss_pred             CceEEcCCC-CEEEEEeCCCcEEEEeCCCCCeE-----EecC-cCceEEEEeCC-CCEEEEecCCCeEEEEECCCceEE-
Q psy8891           1 MCAKFLGDP-TKVVSGSCDRTLKIWDLRSTETK-----FAGS-SCNDLVTYDGA-GTTIISGHFDKKVRFWDFRAEEKV-   71 (203)
Q Consensus         1 ~~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~~-----~~~~-~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~~~~~~-   71 (203)
                      |.+.|||-. ..|+||.+-+.|++|...++.-.     +.++ ..+.-+.|+|. ...++|||.|++|||||+|.++.. 
T Consensus       215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~  294 (440)
T KOG0302|consen  215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA  294 (440)
T ss_pred             eeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc
Confidence            457888833 35899999999999988764322     2222 22333567774 458999999999999999988432 


Q ss_pred             --EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC---CceEEEEecc-ceEEEEEe
Q psy8891          72 --RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA---EEKVRDIELH-GKITSLDL  145 (203)
Q Consensus        72 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~---~~~~~~~~~~-~~v~~~~~  145 (203)
                        .+-...+.|+.                   +.|+..-..|++|+.||+++|||+|+   ++++..+..| .+|+++.+
T Consensus       295 ~~~~kAh~sDVNV-------------------ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW  355 (440)
T KOG0302|consen  295 AVSTKAHNSDVNV-------------------ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW  355 (440)
T ss_pred             eeEeeccCCceee-------------------EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence              22112233444                   44555555899999999999999985   3455556555 34666555


Q ss_pred             cCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         146 SKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ++                       .+...|+.++.|..|-|||+.
T Consensus       356 ~p-----------------------~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  356 HP-----------------------HEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             cc-----------------------ccCceEEeccCCCcEEEEEee
Confidence            53                       134678899999999999975

>KOG0306|consensus

Probab=99.76  E-value=1.9e-17  Score=134.31  Aligned_cols=150  Identities=17%  Similarity=0.269  Sum_probs=118.2

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +|+++|||+++|+.+=-|.+|++|=+.+-+-...   +.-++..+.++||++.++|||.|++||||-++.|.+-+.+-.|
T Consensus       512 L~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH  591 (888)
T KOG0306|consen  512 LCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH  591 (888)
T ss_pred             EEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc
Confidence            5899999999999999999999999987554322   2223444567899999999999999999999999986665443


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeec
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAE  156 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  156 (203)
                       ..|.++.|.|                   ....+.++|.|++|+-||-...+.++.+..|..                 
T Consensus       592 dDSvm~V~F~P-------------------~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-----------------  635 (888)
T KOG0306|consen  592 DDSVMSVQFLP-------------------KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-----------------  635 (888)
T ss_pred             cCceeEEEEcc-------------------cceeEEEecCcceEEeechhhhhhheeeccchh-----------------
Confidence             5677776665                   445899999999999999887777777655421                 


Q ss_pred             CeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         157 GFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                            .+.+.+-.|+|.+++|+|.|.+||+|....
T Consensus       636 ------ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  636 ------EVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ------eeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence                  223444557999999999999999998654

>KOG0973|consensus

Probab=99.76  E-value=2.3e-17  Score=138.17  Aligned_cols=169  Identities=17%  Similarity=0.236  Sum_probs=121.7

Q ss_pred             ceEEcCCCCEEEEEe--CCCcEEEEeCCCC--------Ce-------EEecCcCceEEEEeCCCCEEEEecCCCeEEEEE
Q psy8891           2 CAKFLGDPTKVVSGS--CDRTLKIWDLRST--------ET-------KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD   64 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s--~D~~v~lwdl~~~--------~~-------~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd   64 (203)
                      ++..+||+..++||+  .|+.+++|+.+.-        +.       ...+..++.+++|++||++||+||+|+.|-||+
T Consensus        18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~   97 (942)
T KOG0973|consen   18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWE   97 (942)
T ss_pred             EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEee
Confidence            577899999999999  9999999987531        00       112334567789999999999999999999999


Q ss_pred             CCCceEEEeeee------CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-
Q psy8891          65 FRAEEKVRDIEL------HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-  137 (203)
Q Consensus        65 ~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-  137 (203)
                      ......-..+..      .....++..-.      .+.....-++|+|++.++++++.|++|.+||.++.+.++.++.| 
T Consensus        98 ~~~~~~~~~fgs~g~~~~vE~wk~~~~l~------~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~  171 (942)
T KOG0973|consen   98 RAEIGSGTVFGSTGGAKNVESWKVVSILR------GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ  171 (942)
T ss_pred             ecccCCcccccccccccccceeeEEEEEe------cCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence            764110001100      01111111111      11122334689999999999999999999999999888888766 


Q ss_pred             ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         138 GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       138 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +.|..+.                        +.|-|+||+|=+.|++|++|++..-++++++-
T Consensus       172 s~VKGvs------------------------~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  172 SLVKGVS------------------------WDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             ccccceE------------------------ECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence            3354444                        45789999999999999999988888888774

>KOG0289|consensus

Probab=99.76  E-value=2.3e-16  Score=121.06  Aligned_cols=169  Identities=22%  Similarity=0.366  Sum_probs=127.6

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCc-----CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSS-----CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +..+|.|++|+++|.|++.-+.|++++........     ......+.|||..+.+|..|+.+||||+..+.....+..|
T Consensus       309 ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh  388 (506)
T KOG0289|consen  309 LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH  388 (506)
T ss_pred             eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC
Confidence            45679999999999999999999999876543222     1234678999999999999999999999988766666554


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce--EEEEEecCCcEEEEe
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK--ITSLDLSKGKYYFVF  154 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~  154 (203)
                       ++|..+.|                   +.+|.+|+++..|+.|++||+|.-+..+++..+..  ++++++.....++..
T Consensus       389 t~~vk~i~F-------------------sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  389 TGPVKAISF-------------------SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI  449 (506)
T ss_pred             CCceeEEEe-------------------ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence             56776655                   55788999999999999999998888888877654  888888776555543


Q ss_pred             e-cCeeEE-e-----ee-------------EEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         155 A-EGFKVQ-C-----DF-------------TRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       155 ~-~~~~~~-~-----~~-------------~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      . ....++ +     .|             +.+.|....++++++|.|..++++.+
T Consensus       450 ~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  450 AGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            3 222211 1     11             23445556789999999999998754

>KOG0772|consensus

Probab=99.75  E-value=7.5e-18  Score=131.69  Aligned_cols=158  Identities=24%  Similarity=0.461  Sum_probs=112.8

Q ss_pred             ceEEcCCCC-EEEEEeCCCcEEEEeCCCCCe---EE----ecC--cCceEEEEeCCCCEEEEecCCCeEEEEECCCceE-
Q psy8891           2 CAKFLGDPT-KVVSGSCDRTLKIWDLRSTET---KF----AGS--SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK-   70 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~---~~----~~~--~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~-   70 (203)
                      |..|+|+.+ .++|+|.||++|+||+...+.   .+    .+.  .....++|+++++.++.|-.||.|.+||.+.... 
T Consensus       273 ~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~  352 (641)
T KOG0772|consen  273 CGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR  352 (641)
T ss_pred             ccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc
Confidence            678999775 689999999999999976432   11    111  1234578999999999999999999999855422 


Q ss_pred             -EEeee-eC---CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEEeccceEEEEE
Q psy8891          71 -VRDIE-LH---GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELHGKITSLD  144 (203)
Q Consensus        71 -~~~~~-~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~-~~~~~~~~~~v~~~~  144 (203)
                       ...+. .|   ..|+                   .+.|+++|++|+|=+.|.++++||+++.+ ++++.          
T Consensus       353 p~~~vk~AH~~g~~It-------------------si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~----------  403 (641)
T KOG0772|consen  353 PVMKVKDAHLPGQDIT-------------------SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR----------  403 (641)
T ss_pred             cceEeeeccCCCCcee-------------------EEEeccccchhhhccCCCceeeeeccccccchhhh----------
Confidence             11111 11   1233                   35667788899999999999999998643 33221          


Q ss_pred             ecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC------CCcEEEEeCCCceeeeee
Q psy8891         145 LSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI------DGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------d~~v~~wd~~~~~~~~~~  199 (203)
                                 .++...+.-+.++|+|+.+.+++|+.      .+++.+||..+.+.++.+
T Consensus       404 -----------tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki  453 (641)
T KOG0772|consen  404 -----------TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI  453 (641)
T ss_pred             -----------cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence                       12222334567889999999999864      567999999988888776

>KOG0296|consensus

Probab=99.75  E-value=5.7e-16  Score=116.59  Aligned_cols=190  Identities=14%  Similarity=0.228  Sum_probs=136.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcC--ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSC--NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~--~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      |+.|+.||.+|+||+-+|.|++|+..++...-.. +..  ...+.|.|....|+.|+.||.+-+|.+..+...+.+.+| 
T Consensus       111 ~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~  190 (399)
T KOG0296|consen  111 CCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN  190 (399)
T ss_pred             EEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC
Confidence            7899999999999999999999999886543221 222  345688898899999999999999999887666666655 


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcC---------------------------------------------------
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDG---------------------------------------------------  106 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------  106 (203)
                      .++++-.|.|++.+++.+.....++.|.|                                                   
T Consensus       191 ~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~  270 (399)
T KOG0296|consen  191 SPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC  270 (399)
T ss_pred             CCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence            34666667777666665554444433322                                                   


Q ss_pred             --------------------------CCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEe------
Q psy8891         107 --------------------------AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF------  154 (203)
Q Consensus       107 --------------------------~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------  154 (203)
                                                .-...|.|+-||+|.|||+.+.++.+..+....|..+.+-+..+++..      
T Consensus       271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v  350 (399)
T KOG0296|consen  271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKV  350 (399)
T ss_pred             cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceE
Confidence                                      122567778899999999987776666666566777666554433332      


Q ss_pred             -----ecCe------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         155 -----AEGF------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       155 -----~~~~------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                           +.|.      .++..+...++.|+.++++|+|.|++.++|+..
T Consensus       351 ~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  351 RQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence                 2221      123455677788999999999999999999864

>KOG0639|consensus

Probab=99.75  E-value=9.3e-18  Score=130.99  Aligned_cols=166  Identities=20%  Similarity=0.364  Sum_probs=129.5

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--EEecCc-CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET--KFAGSS-CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~~~~~~-~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      ++.+.+||.+.++++..||+|.+||+.....  .+.++. ....+.++++|..|.|||.|+++|-||++++..+......
T Consensus       513 yALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~  592 (705)
T KOG0639|consen  513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS  592 (705)
T ss_pred             hhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh
Confidence            3567799999999999999999999987543  233332 2345677889999999999999999999999876665556


Q ss_pred             CeEEEEEecCCCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          78 GKITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                      ..|.++..+|.++.++.|..++.                      .+-|.+-|+++++.+.|+-+..|-..-|..+....
T Consensus       593 SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk  672 (705)
T KOG0639|consen  593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  672 (705)
T ss_pred             hhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence            78999999998888777655432                      24578889999999999999999888777766555


Q ss_pred             ccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         136 LHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       136 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      ....|.+.++                        +.|+++++|||.|....+|.+
T Consensus       673 E~SsVlsCDI------------------------S~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  673 ESSSVLSCDI------------------------SFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccCcceeeee------------------------ccCceEEEecCCCcceEEEEE
Confidence            4444544443                        458899999999988888764

>KOG0639|consensus

Probab=99.75  E-value=1.6e-17  Score=129.69  Aligned_cols=178  Identities=20%  Similarity=0.349  Sum_probs=131.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe----c--CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA----G--SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~----~--~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      +|.++|||+.|++|++-.++.||||........    .  ..+ -.++.+||.+..++|-.||.|.|||+..+..++.+.
T Consensus       470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaC-yALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq  548 (705)
T KOG0639|consen  470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC-YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ  548 (705)
T ss_pred             eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhh-hhhhcCCccceeeeeccCCcEEEEEcccceeeeccc
Confidence            578899999999999999999999987543211    1  111 235678999999999999999999999999888887


Q ss_pred             eC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEe
Q psy8891          76 LH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF  154 (203)
Q Consensus        76 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  154 (203)
                      .| ..+.++++++                   +|..|.||+-|.+||-||++.+..+....+..+|.++...+..-.++.
T Consensus       549 GhtDGascIdis~-------------------dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlav  609 (705)
T KOG0639|consen  549 GHTDGASCIDISK-------------------DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAV  609 (705)
T ss_pred             CCCCCceeEEecC-------------------CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceee
Confidence            66 3455555554                   666889999999999999999887766666677777665554322222


Q ss_pred             ec-----------Ce------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         155 AE-----------GF------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       155 ~~-----------~~------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                      ..           +.      .+...+..+.|.+-|++|++.+.|.-+..|..--|.-+-..
T Consensus       610 GMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs  671 (705)
T KOG0639|consen  610 GMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  671 (705)
T ss_pred             ecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence            11           10      11124556778999999999999999999987655544443

>KOG0269|consensus

Probab=99.74  E-value=4.4e-17  Score=132.49  Aligned_cols=148  Identities=26%  Similarity=0.464  Sum_probs=99.5

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeE--Eec-CcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceE-EEeee
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETK--FAG-SSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEK-VRDIE   75 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~--~~~-~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~-~~~~~   75 (203)
                      ++.|++ ....|+|||.||+||+||++.....  +.+ .....-|.|.| .++.++++.+.|.+..||+|.... ...+.
T Consensus       138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~  217 (839)
T KOG0269|consen  138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT  217 (839)
T ss_pred             eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh
Confidence            456765 5568999999999999999864421  222 22222244544 677999999999999999998753 33343


Q ss_pred             e-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce--EEEEeccceEEEEEecCCcEEE
Q psy8891          76 L-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--VRDIELHGKITSLDLSKGKYYF  152 (203)
Q Consensus        76 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~  152 (203)
                      . .++|.++.++|                   ++.+|||||.|++|+|||..+++.  ..+++.-.++.           
T Consensus       218 AH~GpV~c~nwhP-------------------nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~-----------  267 (839)
T KOG0269|consen  218 AHNGPVLCLNWHP-------------------NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVG-----------  267 (839)
T ss_pred             cccCceEEEeecC-------------------CCceeeecCCCccEEEEeccCCCccceeEEeecceee-----------
Confidence            3 37787777665                   556999999999999999986543  22222222233           


Q ss_pred             EeecCeeEEeeeEEEEEEcCCC-EEEEecC--CCcEEEEeCCC
Q psy8891         153 VFAEGFKVQCDFTRAVFVVDDD-YVAVGSI--DGNIYVWDCNT  192 (203)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~--d~~v~~wd~~~  192 (203)
                                   ++.+-|+.. .|++++.  |..|++||++.
T Consensus       268 -------------rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  268 -------------RVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             -------------eeeeccCccchhhhhhccccceEEEEeecc
Confidence                         333434433 4677764  88899998763

>KOG0269|consensus

Probab=99.74  E-value=1.5e-17  Score=135.15  Aligned_cols=147  Identities=19%  Similarity=0.401  Sum_probs=105.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCC---CCeE--E-ecCcCceEEEEe-CCCCEEEEecCCCeEEEEECCCceEEEeeee-CCe
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRS---TETK--F-AGSSCNDLVTYD-GAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-HGK   79 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~---~~~~--~-~~~~~~~~~~~~-~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-~~~   79 (203)
                      +...|+|++..|.|.+||+..   .+..  + .+......+.|. -.+++|+|||.||+||+||++..+...++.. ...
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES  178 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES  178 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence            456799999999999999975   2211  1 122222334444 3567999999999999999998876655544 356


Q ss_pred             EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEeccceEEEEEecCCcEEEEeecCe
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDIELHGKITSLDLSKGKYYFVFAEGF  158 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  158 (203)
                      |+.+.|+|..                  +.+++++...|.+++||+|.. ++.+.+..|.                    
T Consensus       179 iRDV~fsp~~------------------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~--------------------  220 (839)
T KOG0269|consen  179 IRDVKFSPGY------------------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHN--------------------  220 (839)
T ss_pred             hhceeeccCC------------------CceEEEecCCceEEEeeccCchhHHHHhhccc--------------------
Confidence            8888888743                  458999999999999999854 3334443331                    


Q ss_pred             eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee
Q psy8891         159 KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~  195 (203)
                         ..+.++.++|+..+||||+.|++|+|||..+.++
T Consensus       221 ---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  221 ---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             ---CceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence               1233455668889999999999999999875443

>KOG0303|consensus

Probab=99.74  E-value=5.9e-17  Score=123.08  Aligned_cols=150  Identities=21%  Similarity=0.358  Sum_probs=108.4

Q ss_pred             CceEEcC-CCCEEEEEeCCCcEEEEeCCCCC----------eEEecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCc
Q psy8891           1 MCAKFLG-DPTKVVSGSCDRTLKIWDLRSTE----------TKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         1 ~~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~----------~~~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~   68 (203)
                      |.+.|.| +...++|||+|.+|++|.+...-          .+..+.....++.|.| ..+.|+|+|.|.+|.||++.++
T Consensus        85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg  164 (472)
T KOG0303|consen   85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG  164 (472)
T ss_pred             cccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC
Confidence            3467877 55689999999999999986421          1123344456777776 4568999999999999999999


Q ss_pred             eEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCC
Q psy8891          69 EKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKG  148 (203)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~  148 (203)
                      +.+-++.+...|+++.|+.                   +|.++++.+.|++||+||.++++.+.+-..|...        
T Consensus       165 eali~l~hpd~i~S~sfn~-------------------dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~--------  217 (472)
T KOG0303|consen  165 EALITLDHPDMVYSMSFNR-------------------DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA--------  217 (472)
T ss_pred             ceeeecCCCCeEEEEEecc-------------------CCceeeeecccceeEEEcCCCCcEeeecccccCC--------
Confidence            9877777667788877665                   5568999999999999999999887655333211        


Q ss_pred             cEEEEeecCeeEEeeeEEEEEEcCCCEEEEec---CCCcEEEEeCC
Q psy8891         149 KYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS---IDGNIYVWDCN  191 (203)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s---~d~~v~~wd~~  191 (203)
                                    ...++.|..+++.+.||-   .++.+-+||.+
T Consensus       218 --------------k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  218 --------------KPARAIFLASGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             --------------CcceeEEeccCceeeeccccccccceeccCcc
Confidence                          112344555666554443   47778888854

>KOG0294|consensus

Probab=99.73  E-value=1.7e-15  Score=112.28  Aligned_cols=169  Identities=21%  Similarity=0.287  Sum_probs=120.6

Q ss_pred             ceEEcCCCC--EEEEEeCCCcEEEEeCCCCCe---EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPT--KVVSGSCDRTLKIWDLRSTET---KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~--~l~t~s~D~~v~lwdl~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      |+.|.++-.  .|++|+.||.|.+|+...=++   ...+...+.-+.+.|.+++-+|-|.|+.+|.|||-.++.-..+..
T Consensus        88 aL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L  167 (362)
T KOG0294|consen   88 ALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL  167 (362)
T ss_pred             EEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc
Confidence            566777665  899999999999999875322   222223345577889999999999999999999988776555555


Q ss_pred             CCeEEEEEecCCCceEEEecCCc-e--------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCN-D--------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                      ......+.|.|.++.+....... .                    ++.| .++..+++|+.|+.|++||..+..+...+.
T Consensus       168 ~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~  246 (362)
T KOG0294|consen  168 KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFL  246 (362)
T ss_pred             CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee-cCCceEEEecCCceEEEeccCCCccceeee
Confidence            44455577888777654433221 1                    1111 246789999999999999999888877776


Q ss_pred             ccc-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         136 LHG-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       136 ~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                      .|. +|+.+..                      -..|++.+|+|+|+||.|++||++..
T Consensus       247 AH~~RVK~i~~----------------------~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  247 AHENRVKDIAS----------------------YTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             cchhheeeeEE----------------------EecCCceEEEEeccCceEEEEEcccc
Confidence            653 3443221                      11256679999999999999998865

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.73  E-value=3.1e-15  Score=114.54  Aligned_cols=173  Identities=16%  Similarity=0.152  Sum_probs=115.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeCCeEEEEEe
Q psy8891           9 PTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDL   85 (203)
Q Consensus         9 ~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~   85 (203)
                      +..++|++.|++|++||+.+++..  +........+.++|+++.+ ++++.|+.|++||+.+++.+..+..+..+..   
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---   77 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPEL---   77 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccE---
Confidence            357889999999999999876542  2222222346788888876 6778899999999988876655433222222   


Q ss_pred             cCCCceEEEecCCceEEEEcCCCCEEEE-eeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCe------
Q psy8891          86 SKGTETKFAGSSCNDLVTYDGAGTTIIS-GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGF------  158 (203)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------  158 (203)
                                      ..|+|+++.++. ++.|+.|++||+++.+.+..++....+..+.++++...++.....      
T Consensus        78 ----------------~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~  141 (300)
T TIGR03866        78 ----------------FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHF  141 (300)
T ss_pred             ----------------EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEE
Confidence                            346667776654 456899999999988777776654456667776654433322110      


Q ss_pred             ------eEE------eeeEEEEEEcCCCEEE-EecCCCcEEEEeCCCceeeeeec
Q psy8891         159 ------KVQ------CDFTRAVFVVDDDYVA-VGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       159 ------~~~------~~~~~~~~~~~~~~l~-s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                            ...      .......+++++++|+ ++..++.|++||+++++.++.+.
T Consensus       142 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~  196 (300)
T TIGR03866       142 IDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT  196 (300)
T ss_pred             EeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence                  000      0122356788998875 45569999999999998877653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0300|consensus

Probab=99.72  E-value=1.7e-16  Score=118.00  Aligned_cols=154  Identities=23%  Similarity=0.418  Sum_probs=107.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCce-EEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~~   77 (203)
                      |+.|...|++++|+|+|.+..+||+++++...  .++.. ..-+.-.|..++++++|.|.+.|+||++..- .+..+.+|
T Consensus       277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH  356 (481)
T KOG0300|consen  277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH  356 (481)
T ss_pred             ehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc
Confidence            56677889999999999999999999877532  22211 1113345677899999999999999998532 23444444


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEeccceEEEEEecCCcEEEEee
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDIELHGKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~  155 (203)
                       ..|++..|+.+                    ..+++++.|++|++||+++. .++.++.....++-+.++.+       
T Consensus       357 tdtVTS~vF~~d--------------------d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g-------  409 (481)
T KOG0300|consen  357 TDTVTSVVFNTD--------------------DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKG-------  409 (481)
T ss_pred             ccceeEEEEecC--------------------CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecC-------
Confidence             44666666543                    35899999999999999864 45666766666665554432       


Q ss_pred             cCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                       ...++.--.++.||+||++ |..+..++
T Consensus       410 -----------------~~iIAiPhDNRqvRlfDln-G~RlaRlP  436 (481)
T KOG0300|consen  410 -----------------HPIIAIPHDNRQVRLFDLN-GNRLARLP  436 (481)
T ss_pred             -----------------CceEEeccCCceEEEEecC-CCccccCC
Confidence                             2345556677889999988 44444443

>KOG0640|consensus

Probab=99.72  E-value=1.8e-15  Score=112.23  Aligned_cols=190  Identities=18%  Similarity=0.251  Sum_probs=131.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-----EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-----FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      ++.|+|....|++||.|++||++|......+     +........+.+.|.|..|+.|-.-.++|+||+.+-++...-..
T Consensus       177 ~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP  256 (430)
T KOG0640|consen  177 DLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP  256 (430)
T ss_pred             ceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc
Confidence            6789999999999999999999999764321     11222334567889999999999999999999998877543322


Q ss_pred             ----CCeEEEEEecCCCceEEEecCCceE-------------------------EEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          77 ----HGKITSLDLSKGTETKFAGSSCNDL-------------------------VTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        77 ----~~~v~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                          .+.|+++..++.+...++++..+.+                         ..|..+|++|++.+.|..+++|.+.+
T Consensus       257 d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  257 DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence                3668888888877776666655433                         45778999999999999999999999


Q ss_pred             CceEEEEeccceE------EEEEe-cCCcEEEEeecCee-------------------EEeeeEEEEEEcCCCEEEEecC
Q psy8891         128 EEKVRDIELHGKI------TSLDL-SKGKYYFVFAEGFK-------------------VQCDFTRAVFVVDDDYVAVGSI  181 (203)
Q Consensus       128 ~~~~~~~~~~~~v------~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~s~s~  181 (203)
                      ++++++....+.-      +...+ +...+++.-.+...                   +...+....-+|.+..|.|||.
T Consensus       337 ~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd  416 (430)
T KOG0640|consen  337 GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD  416 (430)
T ss_pred             CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence            9998876543110      00001 11122221111111                   1111223345678889999999


Q ss_pred             CCcEEEEeCC
Q psy8891         182 DGNIYVWDCN  191 (203)
Q Consensus       182 d~~v~~wd~~  191 (203)
                      |..+|+|--+
T Consensus       417 D~raRFWyrr  426 (430)
T KOG0640|consen  417 DFRARFWYRR  426 (430)
T ss_pred             cceeeeeeec
Confidence            9999999643

>KOG1408|consensus

Probab=99.72  E-value=2e-16  Score=128.13  Aligned_cols=177  Identities=19%  Similarity=0.241  Sum_probs=121.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCC---e----EE-------------------ec--------------CcCceEEEEeCCCCE
Q psy8891          11 KVVSGSCDRTLKIWDLRSTE---T----KF-------------------AG--------------SSCNDLVTYDGAGTT   50 (203)
Q Consensus        11 ~l~t~s~D~~v~lwdl~~~~---~----~~-------------------~~--------------~~~~~~~~~~~~~~~   50 (203)
                      .+.|+|.|+|||+||+....   .    ++                   ..              ......++++|++++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            38999999999999987511   0    00                   00              001134678999999


Q ss_pred             EEEecCCCeEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC-CC
Q psy8891          51 IISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR-AE  128 (203)
Q Consensus        51 l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~-~~  128 (203)
                      |++|..-|++||||++.-+.+-.++.| .+|.+++++....                .-+.|++++.|+-|+++|+. +.
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~----------------~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL----------------TNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh----------------hhHhhhhccCCceEEEEeccccc
Confidence            999999999999999887766666655 5799998875332                12479999999999999985 34


Q ss_pred             ceEEEEecc-ceEEEEEecCCc--EEEEee-c--------------CeeE--------EeeeEEEEEEcCCCEEEEecCC
Q psy8891         129 EKVRDIELH-GKITSLDLSKGK--YYFVFA-E--------------GFKV--------QCDFTRAVFVVDDDYVAVGSID  182 (203)
Q Consensus       129 ~~~~~~~~~-~~v~~~~~~~~~--~~~~~~-~--------------~~~~--------~~~~~~~~~~~~~~~l~s~s~d  182 (203)
                      .++.++..| ..|+++-+..+.  ..++.. .              +..+        ...+......|..+++++++.|
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD  617 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD  617 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence            444555443 336665443221  222211 1              1000        1122334455778899999999


Q ss_pred             CcEEEEeCCCceeeeeeccCC
Q psy8891         183 GNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       183 ~~v~~wd~~~~~~~~~~~~~~  203 (203)
                      ++|+|||...|+..+.+||.|
T Consensus       618 rnirif~i~sgKq~k~FKgs~  638 (1080)
T KOG1408|consen  618 RNIRIFDIESGKQVKSFKGSR  638 (1080)
T ss_pred             cceEEEeccccceeeeecccc
Confidence            999999999999999999865

>KOG0270|consensus

Probab=99.72  E-value=6.1e-16  Score=118.96  Aligned_cols=145  Identities=19%  Similarity=0.400  Sum_probs=105.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceE-EEeeeeCCeEEEEE
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEK-VRDIELHGKITSLD   84 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~-~~~~~~~~~v~~~~   84 (203)
                      ..|+|||.|.||++||+.++++..  . +...+..+.|.| .+..|++|+.|+++++.|.|.... -..++..+.|-.+.
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~  336 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA  336 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence            479999999999999999877532  2 223344455554 567999999999999999996433 24455567777777


Q ss_pred             ecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEeccc-eEEEEEecCCcEEEEeecCeeEEe
Q psy8891          85 LSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDIELHG-KITSLDLSKGKYYFVFAEGFKVQC  162 (203)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~  162 (203)
                      +.+...                  ..++.+..||+|+-+|+|+. +++.++..|. .|.+++++.               
T Consensus       337 w~~~se------------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~---------------  383 (463)
T KOG0270|consen  337 WDPHSE------------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI---------------  383 (463)
T ss_pred             ecCCCc------------------eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecC---------------
Confidence            666432                  36777889999999999965 7787777663 465555442               


Q ss_pred             eeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee
Q psy8891         163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~  195 (203)
                              ....+++|++.|++|++|++.--++
T Consensus       384 --------~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  384 --------QTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             --------CCCcceeeccccceEEEEeecCCCC
Confidence                    1346899999999999999764443

>KOG0267|consensus

Probab=99.70  E-value=3.4e-17  Score=132.32  Aligned_cols=155  Identities=21%  Similarity=0.416  Sum_probs=121.7

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEE
Q psy8891           6 LGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKIT   81 (203)
Q Consensus         6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~   81 (203)
                      -..++.+++|++|..+.||.+......   ..+......+.++....+|+.|+.||+||+||+...+.++++..| ..+.
T Consensus        37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~  116 (825)
T KOG0267|consen   37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT  116 (825)
T ss_pred             eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc
Confidence            345678999999999999988664432   233344667888888889999999999999999988877777655 3455


Q ss_pred             EEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEE
Q psy8891          82 SLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQ  161 (203)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  161 (203)
                      +++|+|                   -+.+.++++.|.-+++||++...|.+.+..+..+                     
T Consensus       117 sv~f~P-------------------~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v---------------------  156 (825)
T KOG0267|consen  117 SVDFHP-------------------YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV---------------------  156 (825)
T ss_pred             eeeecc-------------------ceEEeccccccccceehhhhccCceeeecCCcce---------------------
Confidence            555555                   4557889999999999999977787766543321                     


Q ss_pred             eeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         162 CDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       162 ~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                        +..+.|.|+|+++++|++|.+++|||+..|++++.++.|
T Consensus       157 --v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~  195 (825)
T KOG0267|consen  157 --VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH  195 (825)
T ss_pred             --eEEEeecCCCceeeccCCcceeeeecccccccccccccc
Confidence              224567899999999999999999999999999988855

>KOG0301|consensus

Probab=99.70  E-value=6e-16  Score=124.68  Aligned_cols=112  Identities=22%  Similarity=0.376  Sum_probs=79.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEEEEEe
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDL   85 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~   85 (203)
                      ++. ++|||+|.|+|+|-......... +......+..-|.+ .++|||.|++||+|.-  ++.++++..| ..|+.+++
T Consensus       112 ~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v  187 (745)
T KOG0301|consen  112 DGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV  187 (745)
T ss_pred             cCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence            444 89999999999997754222222 22223334444554 9999999999999974  6777888777 45777776


Q ss_pred             cCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEE
Q psy8891          86 SKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLD  144 (203)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~  144 (203)
                      -++                    ..++||+-||.|++||+ +|+++.+...|. .+.+++
T Consensus       188 l~~--------------------~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis  226 (745)
T KOG0301|consen  188 LDD--------------------SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS  226 (745)
T ss_pred             ecC--------------------CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence            543                    25999999999999999 677777665542 355544

>KOG0302|consensus

Probab=99.70  E-value=3.3e-16  Score=118.41  Aligned_cols=107  Identities=24%  Similarity=0.468  Sum_probs=81.7

Q ss_pred             eEEcCCC-CEEEEEeCCCcEEEEeCCCCC---eEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc---eEEEe
Q psy8891           3 AKFLGDP-TKVVSGSCDRTLKIWDLRSTE---TKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE---EKVRD   73 (203)
Q Consensus         3 ~~~~~~~-~~l~t~s~D~~v~lwdl~~~~---~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~---~~~~~   73 (203)
                      +.|||.. .+|+|||+||+|||||++...   +..  .+..-+.++.|+....+|+||+.||+++|||+|+-   +++.+
T Consensus       263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~  342 (440)
T KOG0302|consen  263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT  342 (440)
T ss_pred             hccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee
Confidence            3577754 589999999999999999753   222  22333556777776669999999999999999864   45666


Q ss_pred             eeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          74 IELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        74 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      +..| .+|++++++|...                  ..|++++.|..|.|||+.-
T Consensus       343 fk~Hk~pItsieW~p~e~------------------s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  343 FKYHKAPITSIEWHPHED------------------SVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             EEeccCCeeEEEeccccC------------------ceEEeccCCCcEEEEEeec
Confidence            6665 6799999888543                  3688888999999999853

>KOG0264|consensus

Probab=99.70  E-value=6.6e-16  Score=118.83  Aligned_cols=162  Identities=20%  Similarity=0.303  Sum_probs=104.7

Q ss_pred             eEEcC-CCCEEEEEeCCCcEEEEeCCCC--Ce---EEecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCce-EEEee
Q psy8891           3 AKFLG-DPTKVVSGSCDRTLKIWDLRST--ET---KFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEE-KVRDI   74 (203)
Q Consensus         3 ~~~~~-~~~~l~t~s~D~~v~lwdl~~~--~~---~~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~-~~~~~   74 (203)
                      |+|++ +...+++++.|+.+.|||+++.  +.   ..++......+.|.| ++..|||||.|++|++||+|... +++++
T Consensus       233 V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~  312 (422)
T KOG0264|consen  233 VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF  312 (422)
T ss_pred             hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence            56766 4467889999999999999952  21   122233345577777 45689999999999999999864 56777


Q ss_pred             eeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEE
Q psy8891          75 ELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFV  153 (203)
Q Consensus        75 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  153 (203)
                      ..| ..|..+.|+|+..                  .+|+|++.|+.+.+||+..-.-.+.-      ..-.-.+...+|.
T Consensus       313 e~H~dev~~V~WSPh~e------------------tvLASSg~D~rl~vWDls~ig~eq~~------eda~dgppEllF~  368 (422)
T KOG0264|consen  313 EGHEDEVFQVEWSPHNE------------------TVLASSGTDRRLNVWDLSRIGEEQSP------EDAEDGPPELLFI  368 (422)
T ss_pred             cCCCcceEEEEeCCCCC------------------ceeEecccCCcEEEEeccccccccCh------hhhccCCcceeEE
Confidence            666 5689998888755                  47889999999999998642111100      0000011111111


Q ss_pred             eecCeeEEeeeEEEEEEcC-CCEEEEecCCCcEEEEeCC
Q psy8891         154 FAEGFKVQCDFTRAVFVVD-DDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~v~~wd~~  191 (203)
                       +.|..  ..+....++|. +..++|.+.|+.++||++.
T Consensus       369 -HgGH~--~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  369 -HGGHT--AKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             -ecCcc--cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence             11111  01222223444 4568899999999999976

>KOG0268|consensus

Probab=99.69  E-value=1.6e-16  Score=119.64  Aligned_cols=156  Identities=19%  Similarity=0.339  Sum_probs=109.7

Q ss_pred             CceEEcCCCC-EEEEEeCCCcEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce-EEEeeee
Q psy8891           1 MCAKFLGDPT-KVVSGSCDRTLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIEL   76 (203)
Q Consensus         1 ~~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~   76 (203)
                      .|++|+|-.+ .|++|+.|++|-|||++.......  .......++|+|..-.+++|+.|.++..||++-.+ +++....
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d  270 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD  270 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc
Confidence            3788999775 678888999999999997554321  11122347888966689999999999999998654 3333333


Q ss_pred             C-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEee
Q psy8891          77 H-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        77 ~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  155 (203)
                      | ..|.+++                   |+|.|+.+++||+|++|||+..+.+......  +.                 
T Consensus       271 hvsAV~dVd-------------------fsptG~EfvsgsyDksIRIf~~~~~~SRdiY--ht-----------------  312 (433)
T KOG0268|consen  271 HVSAVMDVD-------------------FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HT-----------------  312 (433)
T ss_pred             cceeEEEec-------------------cCCCcchhccccccceEEEeecCCCcchhhh--hH-----------------
Confidence            3 3455555                   4567789999999999999998765431110  00                 


Q ss_pred             cCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                         +-...+.++.++.|.++++|||.|++||+|..+..+-+-
T Consensus       313 ---kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  313 ---KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             ---hhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence               000123456677899999999999999999987554443

>KOG0646|consensus

Probab=99.69  E-value=6.8e-16  Score=119.28  Aligned_cols=144  Identities=23%  Similarity=0.489  Sum_probs=108.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCC---------CC--eEEecCcC--ceE-EEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRS---------TE--TKFAGSSC--NDL-VTYDGAGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~---------~~--~~~~~~~~--~~~-~~~~~~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      |..|+-||.+|+|||.||.|.+|.+..         .+  +.+..+..  .++ +.+.+-...|+|+|.|.++|+||+..
T Consensus       128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~  207 (476)
T KOG0646|consen  128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL  207 (476)
T ss_pred             EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence            788999999999999999999998742         11  11222211  111 12333456999999999999999999


Q ss_pred             ceEEEeeeeCCeEEEEEecCCCceEEEecCC-----------------------------------------ceEEEEcC
Q psy8891          68 EEKVRDIELHGKITSLDLSKGTETKFAGSSC-----------------------------------------NDLVTYDG  106 (203)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~  106 (203)
                      +..+.++..+..+.++++.|....++.|...                                         .++.+++.
T Consensus       208 g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~  287 (476)
T KOG0646|consen  208 GVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST  287 (476)
T ss_pred             ceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence            9998888888788888877765555433322                                         23456788


Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceEEEEe-ccceEEEEEe
Q psy8891         107 AGTTIISGHFDKKVRFWDFRAEEKVRDIE-LHGKITSLDL  145 (203)
Q Consensus       107 ~~~~l~s~s~d~~i~iWd~~~~~~~~~~~-~~~~v~~~~~  145 (203)
                      ||..|++|+.||+|.+||+.+.++++++. ..++|+.+.+
T Consensus       288 DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i  327 (476)
T KOG0646|consen  288 DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI  327 (476)
T ss_pred             CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence            99999999999999999999999998887 7777776665

>KOG1332|consensus

Probab=99.69  E-value=7.2e-16  Score=110.69  Aligned_cols=168  Identities=17%  Similarity=0.230  Sum_probs=107.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCC--e-E---EecCcCceEEEE--eCCCCEEEEecCCCeEEEEECCCceEEE--eee-e
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTE--T-K---FAGSSCNDLVTY--DGAGTTIISGHFDKKVRFWDFRAEEKVR--DIE-L   76 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~--~-~---~~~~~~~~~~~~--~~~~~~l~s~~~D~~i~vwd~~~~~~~~--~~~-~   76 (203)
                      -|++|+|+|.|++|||+..+...  . +   ..+..+.--+.|  +..|+.|+||+.||.|-||.-..+.-.+  +.. +
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h  101 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH  101 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence            47899999999999999998632  1 1   122333333444  4478999999999999999987764322  222 2


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-c-eE-EEEecc-ceEEEEEecCCcEEE
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-E-KV-RDIELH-GKITSLDLSKGKYYF  152 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~-~~-~~~~~~-~~v~~~~~~~~~~~~  152 (203)
                      .+.|+++++.|..-                 |-.|+.++.||+|++.+.++. . .. +....| ..+++++..|.... 
T Consensus       102 ~~SVNsV~waphey-----------------gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~-  163 (299)
T KOG1332|consen  102 SASVNSVAWAPHEY-----------------GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP-  163 (299)
T ss_pred             cccceeeccccccc-----------------ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC-
Confidence            36688888887543                 347999999999999998754 1 11 112222 23666666654211 


Q ss_pred             EeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc--eeeeeeccC
Q psy8891         153 VFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE--QVEAVLKDM  202 (203)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~--~~~~~~~~~  202 (203)
                          +..+.....     ..-+.|++|+.|..|+||+.+.+  +..++|++|
T Consensus       164 ----g~~~~~~~~-----~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H  206 (299)
T KOG1332|consen  164 ----GSLVDQGPA-----AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH  206 (299)
T ss_pred             ----ccccccCcc-----cccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence                000000000     01357999999999999998865  334455554

>KOG0300|consensus

Probab=99.68  E-value=3.9e-16  Score=116.06  Aligned_cols=157  Identities=24%  Similarity=0.429  Sum_probs=105.6

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeC----CCCC--------------eE------------------------EecC-c
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDL----RSTE--------------TK------------------------FAGS-S   37 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl----~~~~--------------~~------------------------~~~~-~   37 (203)
                      +|+.|++.+..++|+|.|++.-||..    +.++              ..                        +.++ .
T Consensus       194 Nsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~  273 (481)
T KOG0300|consen  194 NSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA  273 (481)
T ss_pred             eeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc
Confidence            47899999999999999999999962    1110              00                        0000 0


Q ss_pred             CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC
Q psy8891          38 CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF  116 (203)
Q Consensus        38 ~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  116 (203)
                      ......|...++.++++|||.+..+||+++++.++.+.+|.. .+-.                   +-.|..+.+++.+.
T Consensus       274 vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc-------------------stHptQrLVvTsSr  334 (481)
T KOG0300|consen  274 VVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC-------------------STHPTQRLVVTSSR  334 (481)
T ss_pred             ceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc-------------------ccCCcceEEEEecc
Confidence            001112334578999999999999999999999888877643 2211                   12456678999999


Q ss_pred             CCeEEEEECCCC-ceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC-ce
Q psy8891         117 DKKVRFWDFRAE-EKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT-EQ  194 (203)
Q Consensus       117 d~~i~iWd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~-~~  194 (203)
                      |.+.|+||.+.. ..+..|+.|..                       .++...|. .+..+++||.|.+|++||++. ..
T Consensus       335 DtTFRLWDFReaI~sV~VFQGHtd-----------------------tVTS~vF~-~dd~vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  335 DTTFRLWDFREAIQSVAVFQGHTD-----------------------TVTSVVFN-TDDRVVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             CceeEeccchhhcceeeeeccccc-----------------------ceeEEEEe-cCCceeecCCCceEEEeeeccccC
Confidence            999999999832 12223333321                       23334444 345688999999999999864 66


Q ss_pred             eeeeec
Q psy8891         195 VEAVLK  200 (203)
Q Consensus       195 ~~~~~~  200 (203)
                      ++.+|+
T Consensus       391 plATIR  396 (481)
T KOG0300|consen  391 PLATIR  396 (481)
T ss_pred             cceeee
Confidence            777764

>KOG2055|consensus

Probab=99.68  E-value=1.4e-14  Score=112.06  Aligned_cols=168  Identities=14%  Similarity=0.218  Sum_probs=125.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe-----EEecCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCceEEE--e
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET-----KFAGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEEKVR--D   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-----~~~~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~~~~--~   73 (203)
                      |+.|+|....|++|+.|+++++|-+.....     ......+.....+.|+|. .++++|.-.....||+.+.+..+  .
T Consensus       218 sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~  297 (514)
T KOG2055|consen  218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP  297 (514)
T ss_pred             EEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccC
Confidence            789999999999999999999999875321     111122234466788888 99999999999999998766432  2


Q ss_pred             eeeC--CeEEEEEecCCCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891          74 IELH--GKITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        74 ~~~~--~~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                      +...  ..+..++.++++..++.....+-                      -.+|+.+|+.|+.++.+|.|.+||++...
T Consensus       298 ~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~  377 (514)
T KOG2055|consen  298 PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS  377 (514)
T ss_pred             CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc
Confidence            2222  24667777777776554332221                      25788899999999999999999999998


Q ss_pred             eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      +++.+.-++.+..                      +..+.++++.+||+||..|-|.|||.+
T Consensus       378 ~~~rf~D~G~v~g----------------------ts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  378 CLHRFVDDGSVHG----------------------TSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             eEEEEeecCccce----------------------eeeeecCCCceEEeccCcceEEEeccc
Confidence            8888776654432                      234456788999999999999999965

>KOG2106|consensus

Probab=99.67  E-value=2.7e-14  Score=111.79  Aligned_cols=189  Identities=22%  Similarity=0.400  Sum_probs=125.6

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET---KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +|+.|.++|. ++||..+|+|.+|+..+.+.   .+.+....-.++...+| .|+||+.|+.|-.|| ..-+.++.++.+
T Consensus       250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd-~~y~k~r~~elP  326 (626)
T KOG2106|consen  250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWD-DNYRKLRETELP  326 (626)
T ss_pred             EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-cEeecCccceEEecc-ccccccccccCc
Confidence            5899999987 68999999999999976442   22222223334555665 677799999999999 333334443332


Q ss_pred             ---CeEEEEEecCCCceEEEecCCceE----------------------EEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          78 ---GKITSLDLSKGTETKFAGSSCNDL----------------------VTYDGAGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        78 ---~~v~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                         +.|+.++-....  ++.|...|.+                      .+-.|+..++++++-|+.+++|+  ..+++.
T Consensus       327 e~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w  402 (626)
T KOG2106|consen  327 EQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW  402 (626)
T ss_pred             hhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence               556666544433  3333322221                      23457788999999999999999  556666


Q ss_pred             EEeccceEEEEEecCCcEEEEee--cCe------------eE---EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee
Q psy8891         133 DIELHGKITSLDLSKGKYYFVFA--EGF------------KV---QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       133 ~~~~~~~v~~~~~~~~~~~~~~~--~~~------------~~---~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~  195 (203)
                      +.....+..++++++.. +++..  +|.            ..   ...++.+.|+|+|.+||.|+.|+.|+||.+.....
T Consensus       403 t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  403 TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             EEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence            66666677777777665 22221  111            01   12456778999999999999999999998865444


Q ss_pred             ee
Q psy8891         196 EA  197 (203)
Q Consensus       196 ~~  197 (203)
                      ..
T Consensus       482 ~y  483 (626)
T KOG2106|consen  482 KY  483 (626)
T ss_pred             EE
Confidence            33

>KOG0641|consensus

Probab=99.67  E-value=2.7e-14  Score=101.92  Aligned_cols=185  Identities=18%  Similarity=0.268  Sum_probs=125.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCC------CC--------eEEe---c-CcCceEEEEeCCCCEEEEecCCCeEEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRS------TE--------TKFA---G-SSCNDLVTYDGAGTTIISGHFDKKVRFW   63 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~------~~--------~~~~---~-~~~~~~~~~~~~~~~l~s~~~D~~i~vw   63 (203)
                      +|+|+|.|..-+.||..++.|+.-...      ..        ..++   + ....-..+|+|.|+++++|+.|++||+-
T Consensus        37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l  116 (350)
T KOG0641|consen   37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVL  116 (350)
T ss_pred             eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEE
Confidence            689999999999999999999985421      00        0111   1 1122346899999999999999999998


Q ss_pred             ECCCceE-----EEeeee-CCeEEEEEecCCC---ceEEEecCCc------------------------eEEEEcCCCCE
Q psy8891          64 DFRAEEK-----VRDIEL-HGKITSLDLSKGT---ETKFAGSSCN------------------------DLVTYDGAGTT  110 (203)
Q Consensus        64 d~~~~~~-----~~~~~~-~~~v~~~~~~~~~---~~~~~~~~~~------------------------~~~~~~~~~~~  110 (203)
                      .+....+     ..++.. ++.|+.++|-.+.   ..+++....+                        .+..|+=++..
T Consensus       117 ~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m  196 (350)
T KOG0641|consen  117 PFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAM  196 (350)
T ss_pred             ecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcE
Confidence            7765432     223443 3678888886542   2233322211                        12345556778


Q ss_pred             EEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         111 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       111 l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      +++|+.|++||+||++-..+++++.-..+       .         +..-...+..++..|.|+.|++|-.|...-+||+
T Consensus       197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~-------~---------~glessavaav~vdpsgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  197 FASGSQDKTIRFWDLRVNSCVNTLDNDFH-------D---------GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             EEccCCCceEEEEeeeccceeeeccCccc-------C---------CCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence            99999999999999997766665432110       0         0000112345566788999999999999999999


Q ss_pred             CCceeeeeeccC
Q psy8891         191 NTEQVEAVLKDM  202 (203)
Q Consensus       191 ~~~~~~~~~~~~  202 (203)
                      +.++.++.+.-|
T Consensus       261 rg~r~iq~f~ph  272 (350)
T KOG0641|consen  261 RGGRMIQRFHPH  272 (350)
T ss_pred             eCCceeeeeCCC
Confidence            999999988644

>KOG2048|consensus

Probab=99.67  E-value=2.8e-14  Score=114.90  Aligned_cols=184  Identities=18%  Similarity=0.334  Sum_probs=134.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC---eEEecC--cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE---TKFAGS--SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~---~~~~~~--~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      |++|+.+...||.+=.||+|-+|+++..-   ....++  .....++|. .+..|+|.+.+|.|.-||+.+.++...+..
T Consensus        30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~  108 (691)
T KOG2048|consen   30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDS  108 (691)
T ss_pred             EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecC
Confidence            68999999999999999999999998632   222222  223456777 467999999999999999999888766654


Q ss_pred             -CCeEEEEEecCCCceEEEecCCce-------------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCce
Q psy8891          77 -HGKITSLDLSKGTETKFAGSSCND-------------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEK  130 (203)
Q Consensus        77 -~~~v~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~  130 (203)
                       .+.|.+++.+|..+.+..|+..+.                         .+.|+|++..|++|+.|+.|++||..++..
T Consensus       109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t  188 (691)
T KOG2048|consen  109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT  188 (691)
T ss_pred             CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence             367999999998888777754432                         246889999999999999999999998876


Q ss_pred             EEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         131 VRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       131 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      .+-..++-  -  .++.....           -+..+.|. .+..+++|.+-|+|++||...|.+++.++-|
T Consensus       189 ~~~~~~~~--d--~l~k~~~~-----------iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h  244 (691)
T KOG2048|consen  189 LHIITMQL--D--RLSKREPT-----------IVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCH  244 (691)
T ss_pred             EEEeeecc--c--ccccCCce-----------EEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhh
Confidence            65332220  0  01111111           11223332 5678999999999999999999988877643

>KOG0270|consensus

Probab=99.66  E-value=3.5e-15  Score=114.81  Aligned_cols=154  Identities=22%  Similarity=0.418  Sum_probs=111.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCC----e-EEe----------------cCcCce---EEEEeC-CCCEEEEecCCCeEEE
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTE----T-KFA----------------GSSCND---LVTYDG-AGTTIISGHFDKKVRF   62 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~----~-~~~----------------~~~~~~---~~~~~~-~~~~l~s~~~D~~i~v   62 (203)
                      .|.++|-|..|..|-||||.-..    + .+.                ...+.+   .+.|.. -.+.|+|||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            35689999999999999986311    0 110                001111   122222 2358999999999999


Q ss_pred             EECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC-CceEEEEeccceE
Q psy8891          63 WDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELHGKI  140 (203)
Q Consensus        63 wd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~~~~~~~~~~~v  140 (203)
                      ||+.++++..++..| .+|.+++|++...                  .+|++|++|++|++.|+|. .+..+.+...++|
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p------------------~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V  332 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEP------------------SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV  332 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCc------------------eEEEeccccceEEeeeccCccccCceEEeccce
Confidence            999999998888855 5699999987533                  5899999999999999994 3344556666666


Q ss_pred             EEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC-ceeeeeeccC
Q psy8891         141 TSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT-EQVEAVLKDM  202 (203)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~-~~~~~~~~~~  202 (203)
                      ..+.+.+.                       ....|+++..||+|+-+|++. ++++.+++.|
T Consensus       333 Ekv~w~~~-----------------------se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH  372 (463)
T KOG0270|consen  333 EKVAWDPH-----------------------SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH  372 (463)
T ss_pred             EEEEecCC-----------------------CceeEEEecCCceEEeeecCCCCCceeEEEec
Confidence            66655431                       124678889999999999976 5999998876

>KOG1539|consensus

Probab=99.66  E-value=1.2e-14  Score=119.36  Aligned_cols=164  Identities=19%  Similarity=0.318  Sum_probs=119.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe------cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA------GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~------~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      ||+.++-|...+-|+..|+|-+||++++.....      +......++.+.-++.++|++.||.+++||+.....+..+.
T Consensus       453 av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~  532 (910)
T KOG1539|consen  453 AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR  532 (910)
T ss_pred             EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence            677889999999999999999999998654321      12223345667777889999999999999999888777766


Q ss_pred             eCCeEEEEEecCCCceEEE-----------------------ecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          76 LHGKITSLDLSKGTETKFA-----------------------GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      ....+..+..+.....+..                       ...-.+..+|+|||++|++++.|++||+||+.++.++-
T Consensus       533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID  612 (910)
T KOG1539|consen  533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID  612 (910)
T ss_pred             cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence            5444444333322211110                       11122346899999999999999999999999999887


Q ss_pred             EEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCC-CcEEEEe
Q psy8891         133 DIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSID-GNIYVWD  189 (203)
Q Consensus       133 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-~~v~~wd  189 (203)
                      .+.......                        .+.|+|++++|+|...| ..|++|-
T Consensus       613 ~~~vd~~~~------------------------sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  613 GLLVDSPCT------------------------SLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eEecCCcce------------------------eeEECCCCCEEEEEEecCceEEEEE
Confidence            776555443                        44566889999999988 6699995

>KOG1408|consensus

Probab=99.66  E-value=2.9e-15  Score=121.60  Aligned_cols=182  Identities=15%  Similarity=0.264  Sum_probs=130.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-ecCcCceEEE--Ee-C--CCCEEEEecCCCeEEEEECCCc-eEEEee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-AGSSCNDLVT--YD-G--AGTTIISGHFDKKVRFWDFRAE-EKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~~~~~~~~--~~-~--~~~~l~s~~~D~~i~vwd~~~~-~~~~~~   74 (203)
                      |++.+|+|+.|++|..-|++|+|||...+... ...+...+++  ++ |  ..++|+|+|.|..|.|||+... ..++++
T Consensus       464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl  543 (1080)
T KOG1408|consen  464 ALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL  543 (1080)
T ss_pred             EEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh
Confidence            57789999999999999999999998644221 1111123333  32 1  2358999999999999998654 455666


Q ss_pred             eeC-CeEEEEEecCCC-c-eEEEecCC-------------c-------------e--EEEEcCCCCEEEEeeCCCeEEEE
Q psy8891          75 ELH-GKITSLDLSKGT-E-TKFAGSSC-------------N-------------D--LVTYDGAGTTIISGHFDKKVRFW  123 (203)
Q Consensus        75 ~~~-~~v~~~~~~~~~-~-~~~~~~~~-------------~-------------~--~~~~~~~~~~l~s~s~d~~i~iW  123 (203)
                      ..| ..|+++.|...+ . .++.....             +             +  -...+|..++++++.-|+.|+|+
T Consensus       544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif  623 (1080)
T KOG1408|consen  544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF  623 (1080)
T ss_pred             cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence            654 568888887543 1 12111000             0             0  12346778899999999999999


Q ss_pred             ECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         124 DFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       124 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                      |+.+++..+.|.....                    ...+..++.+.|.+-|+++.+.|.++-++|..+|+++.+..||.
T Consensus       624 ~i~sgKq~k~FKgs~~--------------------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs  683 (1080)
T KOG1408|consen  624 DIESGKQVKSFKGSRD--------------------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS  683 (1080)
T ss_pred             eccccceeeeeccccc--------------------CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence            9999998887764311                    01234566778899999999999999999999999999998873

>KOG1274|consensus

Probab=99.66  E-value=5.6e-15  Score=122.34  Aligned_cols=160  Identities=20%  Similarity=0.324  Sum_probs=121.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--EEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET--KFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      +++|+.+|++++.||.|-.||+-++.....  .+.+ ..++..+.++|+++.|++.+.||.++|||++++...+++..-.
T Consensus       101 ~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~  180 (933)
T KOG1274|consen  101 DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD  180 (933)
T ss_pred             EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence            578899999999999999999999976332  2332 3345567899999999999999999999999988877765422


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCe
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGF  158 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  158 (203)
                      +......          ........|+|+|..++....|+.|++++...++....+.....                   
T Consensus       181 k~n~~~~----------s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~-------------------  231 (933)
T KOG1274|consen  181 KDNEFIL----------SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS-------------------  231 (933)
T ss_pred             ccccccc----------cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc-------------------
Confidence            2211111          11223467999988999999999999999988877665543211                   


Q ss_pred             eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         159 KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                        ...+..+.++|.|+|||+++.||.|-|||.++
T Consensus       232 --ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  232 --SSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             --ccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence              11245677889999999999999999999985

>KOG0321|consensus

Probab=99.65  E-value=2.3e-15  Score=120.39  Aligned_cols=192  Identities=21%  Similarity=0.303  Sum_probs=108.8

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----E-ecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEe---
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETK----F-AGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRD---   73 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~-~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~---   73 (203)
                      +.|.|-..+|++++.|.++|+||+.+.+..    + .+......+++.+ +...+++|+.||.|.|||++-...-..   
T Consensus       106 l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~  185 (720)
T KOG0321|consen  106 LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF  185 (720)
T ss_pred             eccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH
Confidence            456776678999999999999999874432    2 2222233345555 556899999999999999975431000   


Q ss_pred             ---e--eeCCeEEEEE-ecCCCceEEEe----cCCceEEEEcCCCCEEEEeeC-CCeEEEEECCCCceEEEEe-------
Q psy8891          74 ---I--ELHGKITSLD-LSKGTETKFAG----SSCNDLVTYDGAGTTIISGHF-DKKVRFWDFRAEEKVRDIE-------  135 (203)
Q Consensus        74 ---~--~~~~~v~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~l~s~s~-d~~i~iWd~~~~~~~~~~~-------  135 (203)
                         +  .+.+.-.-.. ..+...+-.+.    ....+++.|. |...|++++. |+.|++||++........+       
T Consensus       186 ~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~  264 (720)
T KOG0321|consen  186 DNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKY  264 (720)
T ss_pred             hhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCc
Confidence               0  0000000000 00000000011    1112234444 5567888887 9999999998755432221       


Q ss_pred             -cc----ceEEEEEecC-CcEEEEeecCeeE---------------------EeeeEEEEEEcCCCEEEEecCCCcEEEE
Q psy8891         136 -LH----GKITSLDLSK-GKYYFVFAEGFKV---------------------QCDFTRAVFVVDDDYVAVGSIDGNIYVW  188 (203)
Q Consensus       136 -~~----~~v~~~~~~~-~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~s~s~d~~v~~w  188 (203)
                       .+    -.+.++.+.. +.++++....-.+                     ..-..+..++|++.++++|+.|+.+++|
T Consensus       265 ~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw  344 (720)
T KOG0321|consen  265 PTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIW  344 (720)
T ss_pred             cCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeee
Confidence             11    1133333322 3344443322111                     1123456678999999999999999999


Q ss_pred             eCCCcee
Q psy8891         189 DCNTEQV  195 (203)
Q Consensus       189 d~~~~~~  195 (203)
                      .+++-+.
T Consensus       345 ~vs~~e~  351 (720)
T KOG0321|consen  345 VVSSPEA  351 (720)
T ss_pred             eecCccC
Confidence            9886544

>KOG0301|consensus

Probab=99.65  E-value=1e-14  Score=117.70  Aligned_cols=142  Identities=24%  Similarity=0.399  Sum_probs=98.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC-e
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-K   79 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~-~   79 (203)
                      +|.+.|++ .++|||+|++||+|.-.+....+.++ .++..++.-+ +..++||+.||.||.|++ +++++.++..|. -
T Consensus       145 Av~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~  221 (745)
T KOG0301|consen  145 AVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF  221 (745)
T ss_pred             eeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEec-CCCeEeecCCceEEEEec-cCceeeeeeccceE
Confidence            45667777 78999999999999875433333332 3334445544 458999999999999999 677776665553 3


Q ss_pred             EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCee
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK  159 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  159 (203)
                      |++++..                   .++..|++++.|+++|||+..  ++.+.++++..                    
T Consensus       222 vYsis~~-------------------~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--------------------  260 (745)
T KOG0301|consen  222 VYSISMA-------------------LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--------------------  260 (745)
T ss_pred             EEEEEec-------------------CCCCeEEEecCCceEEEeecC--ceEEEEecCcc--------------------
Confidence            6665522                   244589999999999999876  67777766541                    


Q ss_pred             EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         160 VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                         .+..+.+. .+.-+++|++||.||+|-..
T Consensus       261 ---siWsa~~L-~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  261 ---SIWSAKVL-LNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ---ceEEEEEe-eCCCEEEeccCceEEEEEec
Confidence               01122222 33457899999999999865

>KOG0283|consensus

Probab=99.65  E-value=8.1e-15  Score=120.20  Aligned_cols=134  Identities=22%  Similarity=0.347  Sum_probs=103.4

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      |.++||.+ ..|+|+|.|.|||||++...+++  +.+..-+..+.|.| |+++++||+.|+.||||++...+...-...+
T Consensus       373 LDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~  451 (712)
T KOG0283|consen  373 LDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR  451 (712)
T ss_pred             eecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh
Confidence            35677755 68999999999999999887765  34444455666666 7789999999999999999888876666667


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcC--------------------------------CCCEEEEeeCCCeEEEEEC
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDG--------------------------------AGTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~l~s~s~d~~i~iWd~  125 (203)
                      .-|+++.+.|++...+.|...+.+..|..                                +...|+..+.|..|||+|.
T Consensus       452 ~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  452 DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence            88999999999999998877765543321                                2234777788999999999


Q ss_pred             CCCceEEEEe
Q psy8891         126 RAEEKVRDIE  135 (203)
Q Consensus       126 ~~~~~~~~~~  135 (203)
                      +...++..+.
T Consensus       532 ~~~~lv~KfK  541 (712)
T KOG0283|consen  532 RDKDLVHKFK  541 (712)
T ss_pred             cchhhhhhhc
Confidence            7766655544

>KOG1036|consensus

Probab=99.63  E-value=3.9e-14  Score=104.69  Aligned_cols=145  Identities=23%  Similarity=0.354  Sum_probs=98.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee---eCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE---LHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~---~~~   78 (203)
                      |+.+++-...++|||+|++||+||.+.............+.+.+-.++.|+.|..|..+.+||++..+...+..   ..-
T Consensus        99 ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lky  178 (323)
T KOG1036|consen   99 CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKY  178 (323)
T ss_pred             EEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhcccccee
Confidence            66777778889999999999999998632222222223455667778899999999999999998765432211   123


Q ss_pred             eEEEEEecCCCceEEEecCCc------------------------------------eEEEEcCCCCEEEEeeCCCeEEE
Q psy8891          79 KITSLDLSKGTETKFAGSSCN------------------------------------DLVTYDGAGTTIISGHFDKKVRF  122 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~l~s~s~d~~i~i  122 (203)
                      .++++++-|.....+.++..+                                    ..+.|+|-..+++||+.||.|.+
T Consensus       179 qtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~  258 (323)
T KOG1036|consen  179 QTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI  258 (323)
T ss_pred             EEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence            567777766544433222111                                    13578888889999999999999


Q ss_pred             EECCCCceEEEEecc-ceEEEEEec
Q psy8891         123 WDFRAEEKVRDIELH-GKITSLDLS  146 (203)
Q Consensus       123 Wd~~~~~~~~~~~~~-~~v~~~~~~  146 (203)
                      ||+.+.+.++++... ..|.+++++
T Consensus       259 Wd~~~rKrl~q~~~~~~SI~slsfs  283 (323)
T KOG1036|consen  259 WDLFNRKRLKQLAKYETSISSLSFS  283 (323)
T ss_pred             ccCcchhhhhhccCCCCceEEEEec
Confidence            999887776665433 224444433

>KOG1274|consensus

Probab=99.63  E-value=7.3e-14  Score=115.84  Aligned_cols=184  Identities=18%  Similarity=0.218  Sum_probs=132.9

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCe--EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe-eeeCCe
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD-IELHGK   79 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~-~~~~~~   79 (203)
                      +.|.|+|+.|+|++.||.||+|+......  ..-......+..+.-.++++++|+.+++|.+|.+..++.-.- .+..-+
T Consensus        19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp   98 (933)
T KOG1274|consen   19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLP   98 (933)
T ss_pred             EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeecc
Confidence            67899999999999999999998765421  111112223344555677999999999999999987754211 122346


Q ss_pred             EEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891          80 ITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      ++.++++-++..+++|+....                       .+.|+|.+..||+.+-||+|++||+.++...+.+..
T Consensus        99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~  178 (933)
T KOG1274|consen   99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTG  178 (933)
T ss_pred             ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhccc
Confidence            777888877777776654422                       357899999999999999999999998877665542


Q ss_pred             cceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         137 HGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       137 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      -.+.+....               .....+.+++|++..|+..+.|+.|++|+.+..+....|+.
T Consensus       179 v~k~n~~~~---------------s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~  228 (933)
T KOG1274|consen  179 VDKDNEFIL---------------SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD  228 (933)
T ss_pred             CCccccccc---------------cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence            221111110               11345677899999999999999999999999888887764

>KOG0305|consensus

Probab=99.61  E-value=1.1e-13  Score=110.48  Aligned_cols=169  Identities=20%  Similarity=0.318  Sum_probs=121.4

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-C-C
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-H-G   78 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-~-~   78 (203)
                      .|+ ....|+.|. ...|.+|+..++...  ... ......+.|.++|.+|+.|-.+|++.|||....+.+..+.. | +
T Consensus       184 dWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~  261 (484)
T KOG0305|consen  184 DWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS  261 (484)
T ss_pred             hcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc
Confidence            345 233455554 578999999876632  222 23345678999999999999999999999998888888776 3 4


Q ss_pred             eEEEEEecCCCceEEEecCCce------------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891          79 KITSLDLSKGTETKFAGSSCND------------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                      .|-++++..  ..+..|..+..                        -..|++|+.++++|+-|+.+.|||..+.++...+
T Consensus       262 rvg~laW~~--~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~  339 (484)
T KOG0305|consen  262 RVGSLAWNS--SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF  339 (484)
T ss_pred             eeEEEeccC--ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE
Confidence            577777662  33333333221                        2569999999999999999999999777776666


Q ss_pred             ecc-ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec--CCCcEEEEeCCCceeeeee
Q psy8891         135 ELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS--IDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       135 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~v~~wd~~~~~~~~~~  199 (203)
                      ..| .-|+.++++|                       -....||+|+  .|++|++||.++|+.+..+
T Consensus       340 ~~H~aAVKA~awcP-----------------------~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v  384 (484)
T KOG0305|consen  340 TEHTAAVKALAWCP-----------------------WQSGLLATGGGSADRCIKFWNTNTGARIDSV  384 (484)
T ss_pred             eccceeeeEeeeCC-----------------------CccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence            554 3355555443                       1456788865  6999999999999988765

>KOG2445|consensus

Probab=99.61  E-value=1.1e-13  Score=102.59  Aligned_cols=110  Identities=17%  Similarity=0.276  Sum_probs=73.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe-------EEecCcCceEEEEe--CCCCEEEEecCCCeEEEEECCCceE--
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET-------KFAGSSCNDLVTYD--GAGTTIISGHFDKKVRFWDFRAEEK--   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-------~~~~~~~~~~~~~~--~~~~~l~s~~~D~~i~vwd~~~~~~--   70 (203)
                      ||.|.+-|++++|||.|++|++||.+...-       ...+....--+.|.  --|+.|++|+.|++++||.-.....  
T Consensus        18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~   97 (361)
T KOG2445|consen   18 DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA   97 (361)
T ss_pred             eeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc
Confidence            688999999999999999999999754221       11122221112332  2578999999999999997531110  


Q ss_pred             -------EEee-eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC
Q psy8891          71 -------VRDI-ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        71 -------~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~  128 (203)
                             ..++ ...+.|+.+.|+|..-                 |-.+++++.||++|||+....
T Consensus        98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hl-----------------GLklA~~~aDG~lRIYEA~dp  146 (361)
T KOG2445|consen   98 HGRRWVRRTTLVDSRSSVTDVKFAPKHL-----------------GLKLAAASADGILRIYEAPDP  146 (361)
T ss_pred             ccceeEEEEEeecCCcceeEEEecchhc-----------------ceEEEEeccCcEEEEEecCCc
Confidence                   0111 1234566666666332                 457999999999999986543

>KOG2055|consensus

Probab=99.61  E-value=4.8e-14  Score=109.22  Aligned_cols=190  Identities=15%  Similarity=0.271  Sum_probs=143.9

Q ss_pred             ceEEcCCCC-EEEEEeCCCcEEEEeCCCCCeE-Ee---cCc--CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPT-KVVSGSCDRTLKIWDLRSTETK-FA---GSS--CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~-~~---~~~--~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      +++|.|+|. +++++|.-.....||+.+.+.. +.   +..  ...-..++++++.|+..|..|.|.+--..+++.+.++
T Consensus       262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~  341 (514)
T KOG2055|consen  262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF  341 (514)
T ss_pred             eeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee
Confidence            578999999 9999999999999999875432 11   111  1223456789999999999999999999999999999


Q ss_pred             eeCCeEEEEEecCCCceEEEecCCceE------------------------EEEcCCCCEEEEeeCCCeEEEEECCC---
Q psy8891          75 ELHGKITSLDLSKGTETKFAGSSCNDL------------------------VTYDGAGTTIISGHFDKKVRFWDFRA---  127 (203)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~s~s~d~~i~iWd~~~---  127 (203)
                      ...+.|..+.|+.++..+++.+..+.+                        ++.+++|.++|+||..|.|.|||..+   
T Consensus       342 KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~  421 (514)
T KOG2055|consen  342 KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA  421 (514)
T ss_pred             eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhc
Confidence            999999999999988877765544443                        34567899999999999999999643   


Q ss_pred             ---CceEEEE-eccceEEEEEecCCcEEEEeecC-----e------------------eEEeeeEEEEEEcCCCEEEEec
Q psy8891         128 ---EEKVRDI-ELHGKITSLDLSKGKYYFVFAEG-----F------------------KVQCDFTRAVFVVDDDYVAVGS  180 (203)
Q Consensus       128 ---~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----~------------------~~~~~~~~~~~~~~~~~l~s~s  180 (203)
                         .+|++.+ .+-..|+++.++++..+++....     +                  .....++++.|+|.+.+++.|-
T Consensus       422 s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  422 STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence               3344433 23356777777776655532211     0                  0122457889999999999999


Q ss_pred             CCCcEEEEeCC
Q psy8891         181 IDGNIYVWDCN  191 (203)
Q Consensus       181 ~d~~v~~wd~~  191 (203)
                      .+|.|.+|.++
T Consensus       502 e~grv~l~kL~  512 (514)
T KOG2055|consen  502 EAGRVHLFKLH  512 (514)
T ss_pred             CCCceeeEeec
Confidence            99999999875

>KOG0307|consensus

Probab=99.61  E-value=3e-15  Score=126.31  Aligned_cols=158  Identities=22%  Similarity=0.358  Sum_probs=109.4

Q ss_pred             ceEEcCCCC-EEEEEeCCCcEEEEeCCCCCeEEec--C-cCc--eEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPT-KVVSGSCDRTLKIWDLRSTETKFAG--S-SCN--DLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~~~~--~-~~~--~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      .+.|++... +|++|+.||.|.|||+...+..+..  . ...  ..+.|.. ....|+|++.+|.+-|||+|..+.+-.+
T Consensus       121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l  200 (1049)
T KOG0307|consen  121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL  200 (1049)
T ss_pred             eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc
Confidence            356777665 9999999999999999875543221  1 122  3344543 2347899999999999999998776555


Q ss_pred             eeCCe---EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC---eEEEEECCCC-ceEEEEeccce-EEEEEec
Q psy8891          75 ELHGK---ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAE-EKVRDIELHGK-ITSLDLS  146 (203)
Q Consensus        75 ~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~i~iWd~~~~-~~~~~~~~~~~-v~~~~~~  146 (203)
                      ..++.   +..++|+|+..                  .+|++++.|.   .|.+||+|.. .+.+.++.|.. |.++++.
T Consensus       201 s~~~~~~~~S~l~WhP~~a------------------Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc  262 (1049)
T KOG0307|consen  201 SDTPGRMHCSVLAWHPDHA------------------TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC  262 (1049)
T ss_pred             ccCCCccceeeeeeCCCCc------------------eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence            54433   55566666543                  3455555543   8999999853 45555554432 4444433


Q ss_pred             CCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         147 KGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .                       .|..+|+|++.|+.|.+|+.++||.+..+.
T Consensus       263 ~-----------------------~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  263 P-----------------------QDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             C-----------------------CCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            2                       245889999999999999999999998875

>KOG0771|consensus

Probab=99.59  E-value=2.4e-14  Score=109.63  Aligned_cols=163  Identities=22%  Similarity=0.309  Sum_probs=105.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      +++|+++|..++||+.||++|+|++...+..   ..++....-+.|+||++.|+|-+.| ..+|||++++.++......+
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence            6899999999999999999999997654332   1233334557899999999999999 99999999986654443221


Q ss_pred             e---EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE------EEeccceEEEEEecCCc
Q psy8891          79 K---ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR------DIELHGKITSLDLSKGK  149 (203)
Q Consensus        79 ~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~------~~~~~~~v~~~~~~~~~  149 (203)
                      +   ....-|..+...              +.-+.++....-+.|+.||+....--.      .+.-...|.+       
T Consensus       228 k~~~~~~cRF~~d~~~--------------~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSs-------  286 (398)
T KOG0771|consen  228 KDEMFSSCRFSVDNAQ--------------ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISS-------  286 (398)
T ss_pred             cchhhhhceecccCCC--------------ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCccee-------
Confidence            1   111112211100              000233333445566666654221100      1111112333       


Q ss_pred             EEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         150 YYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                                       ..-+++|++++.|+.||.|-|++..+-|.++..|.+|
T Consensus       287 -----------------l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH  323 (398)
T KOG0771|consen  287 -----------------LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH  323 (398)
T ss_pred             -----------------EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhh
Confidence                             3344689999999999999999999999999888776

>KOG0321|consensus

Probab=99.59  E-value=9.8e-14  Score=111.27  Aligned_cols=169  Identities=21%  Similarity=0.315  Sum_probs=95.8

Q ss_pred             ceEEcCC-CCEEEEEeCCCcEEEEeCCCCCe---------E---Eec----------------CcCceE-----EEEeCC
Q psy8891           2 CAKFLGD-PTKVVSGSCDRTLKIWDLRSTET---------K---FAG----------------SSCNDL-----VTYDGA   47 (203)
Q Consensus         2 ~~~~~~~-~~~l~t~s~D~~v~lwdl~~~~~---------~---~~~----------------~~~~~~-----~~~~~~   47 (203)
                      +++|.|. ...++||+.||.|.|||++....         .   ...                ...+.+     +.+..|
T Consensus       149 S~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD  228 (720)
T KOG0321|consen  149 SECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD  228 (720)
T ss_pred             hhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec
Confidence            4577774 46789999999999999863110         0   000                000011     334568


Q ss_pred             CCEEEEecC-CCeEEEEECCCceEEEeee--------eC----CeEEEEEecCCCceEEEecCCceEEEE----------
Q psy8891          48 GTTIISGHF-DKKVRFWDFRAEEKVRDIE--------LH----GKITSLDLSKGTETKFAGSSCNDLVTY----------  104 (203)
Q Consensus        48 ~~~l~s~~~-D~~i~vwd~~~~~~~~~~~--------~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~----------  104 (203)
                      +..|+|+|. |+.|||||++........+        .+    -.+.++.....+.++++.+..+.+++|          
T Consensus       229 e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~  308 (720)
T KOG0321|consen  229 ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV  308 (720)
T ss_pred             cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch
Confidence            889999998 9999999998765432211        11    124455555555555555554444333          


Q ss_pred             -----------------cCCCCEEEEeeCCCeEEEEECCCCceEEEE-eccceEEEEEecCCcEEEEeecCeeEEeeeEE
Q psy8891         105 -----------------DGAGTTIISGHFDKKVRFWDFRAEEKVRDI-ELHGKITSLDLSKGKYYFVFAEGFKVQCDFTR  166 (203)
Q Consensus       105 -----------------~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (203)
                                       +|++..++++++|....+|.+.+.+..-.+ ..+                       ...++.
T Consensus       309 ~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh-----------------------t~eVt~  365 (720)
T KOG0321|consen  309 AEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH-----------------------TREVTT  365 (720)
T ss_pred             hhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCc-----------------------ceEEEE
Confidence                             345666666666666666666543221111 011                       011122


Q ss_pred             EEEEc-CCCEEEEecCCCcEEEEeCCCc
Q psy8891         167 AVFVV-DDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       167 ~~~~~-~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                      +...| .-.-+++++.|-++++|++..+
T Consensus       366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  366 VRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EeeccccCCCceeeccCcceEEEeccCc
Confidence            22222 2234678899999999998654

>KOG4378|consensus

Probab=99.58  E-value=6.1e-14  Score=109.76  Aligned_cols=183  Identities=16%  Similarity=0.239  Sum_probs=125.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      |++......++++|+-.+.|||||++...+.  .+ +......+.+...+.+|++++..|.|-|..+.++....++... 
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s  163 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS  163 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence            4555556688999999999999999854321  22 2223445667778889999999999999999998877776654 


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc--ceEEEEEecCCcEEEEe
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH--GKITSLDLSKGKYYFVF  154 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~  154 (203)
                       ..|+-+.+++...                  ..|.+++++|+|.+||+....++..+...  .+...+.+++..-.++.
T Consensus       164 gqsvRll~ys~skr------------------~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v  225 (673)
T KOG4378|consen  164 GQSVRLLRYSPSKR------------------FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV  225 (673)
T ss_pred             CCeEEEeecccccc------------------eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence             2344555554322                  25778899999999999877766544322  12333444443222221


Q ss_pred             ecC--e----------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC-CceeeeeeccC
Q psy8891         155 AEG--F----------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN-TEQVEAVLKDM  202 (203)
Q Consensus       155 ~~~--~----------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~-~~~~~~~~~~~  202 (203)
                      .-|  .                ....+++.++|.++|-+|+.|...|.|+.||++ +.++++++..|
T Consensus       226 sVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah  292 (673)
T KOG4378|consen  226 SVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH  292 (673)
T ss_pred             EecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence            111  0                112245678899999999999999999999997 47888888665

>KOG1273|consensus

Probab=99.58  E-value=9.4e-14  Score=103.29  Aligned_cols=142  Identities=18%  Similarity=0.325  Sum_probs=106.7

Q ss_pred             eEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC
Q psy8891          40 DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK  118 (203)
Q Consensus        40 ~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  118 (203)
                      ..+.|++.|.+|+.|-.||.+-|||+.+-..-+.+..|- +|.                   .++|+++|+.|+|+|.|.
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~-------------------sl~WS~dgr~LltsS~D~   87 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPIT-------------------SLCWSRDGRKLLTSSRDW   87 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccccee-------------------EEEecCCCCEeeeecCCc
Confidence            446788999999999999999999997765444444432 233                   357888999999999999


Q ss_pred             eEEEEECCCCceEEEEeccceEEEEEecCCc-EEEEeec----Ce-------eEE-----------eeeEEEEEEcCCCE
Q psy8891         119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGK-YYFVFAE----GF-------KVQ-----------CDFTRAVFVVDDDY  175 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~----~~-------~~~-----------~~~~~~~~~~~~~~  175 (203)
                      .|++||+..|.+.+.+.+..+|....+++.. ..++...    ..       ...           ....+..|.+.|++
T Consensus        88 si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y  167 (405)
T KOG1273|consen   88 SIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY  167 (405)
T ss_pred             eeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCE
Confidence            9999999999999999999888888877643 2221110    00       000           01112346778999


Q ss_pred             EEEecCCCcEEEEeCCCceeeeeec
Q psy8891         176 VAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       176 l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +++|...|.+.++|.++.+++..++
T Consensus       168 IitGtsKGkllv~~a~t~e~vas~r  192 (405)
T KOG1273|consen  168 IITGTSKGKLLVYDAETLECVASFR  192 (405)
T ss_pred             EEEecCcceEEEEecchheeeeeee
Confidence            9999999999999999999988775

>KOG0642|consensus

Probab=99.57  E-value=5.3e-14  Score=111.28  Aligned_cols=176  Identities=20%  Similarity=0.332  Sum_probs=120.5

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCC-------------eEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE-------------TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~-------------~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      +|+...+++..++||+-||+|+.|++....             +...+..+...+++++....|++||.||++|.|+...
T Consensus       348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCC
Confidence            588999999999999999999999875211             1111222334567777778999999999999999876


Q ss_pred             ceE--EEeeeeCCeEEEEEecCCCc----------------------eEEEecC---------CceEEEEcCCCCEEEEe
Q psy8891          68 EEK--VRDIELHGKITSLDLSKGTE----------------------TKFAGSS---------CNDLVTYDGAGTTIISG  114 (203)
Q Consensus        68 ~~~--~~~~~~~~~v~~~~~~~~~~----------------------~~~~~~~---------~~~~~~~~~~~~~l~s~  114 (203)
                      ..+  ......++.-.++++.....                      ..++.+.         ....+.+.|...+.+++
T Consensus       428 ~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~  507 (577)
T KOG0642|consen  428 ESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA  507 (577)
T ss_pred             cCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec
Confidence            655  22222233334444332110                      0111111         11235677888899999


Q ss_pred             eCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         115 HFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       115 s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      ..|++|+++|..++.+++....+-.                       .++.+++.|++.+|++|+.|+.+++|.+....
T Consensus       508 hed~~Ir~~dn~~~~~l~s~~a~~~-----------------------svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  508 HEDRSIRFFDNKTGKILHSMVAHKD-----------------------SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             ccCCceecccccccccchheeeccc-----------------------eecceeecCCCceEEeecCCceeehhhccchh
Confidence            9999999999999988766544321                       23455667889999999999999999987666


Q ss_pred             eeeee
Q psy8891         195 VEAVL  199 (203)
Q Consensus       195 ~~~~~  199 (203)
                      ++...
T Consensus       565 ~~~es  569 (577)
T KOG0642|consen  565 CVLES  569 (577)
T ss_pred             eeecc
Confidence            65543

>KOG0303|consensus

Probab=99.56  E-value=5.8e-14  Score=107.02  Aligned_cols=125  Identities=19%  Similarity=0.240  Sum_probs=88.4

Q ss_pred             EEeC-CCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCC-CCEEEEeeCCCeE
Q psy8891          43 TYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA-GTTIISGHFDKKV  120 (203)
Q Consensus        43 ~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~i  120 (203)
                      .|.| +++.++|||.|.+|+||++-.+...+.+.  .++..+..+..         ..-++.|.|. -+.|+|++.|.+|
T Consensus        88 ~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--epvv~L~gH~r---------rVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   88 DWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--EPVVELYGHQR---------RVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccCCceeecCCCCceEEEEECCCcccccCcc--cceEEEeecce---------eEEEEeecccchhhHhhccCCceE
Confidence            4555 56799999999999999987665433322  22222222211         1112344443 3589999999999


Q ss_pred             EEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         121 RFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       121 ~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .+||+.+++.+-++..+..|.+                        ..|+.+|.+|+|.+.|..||+||.++++++..-+
T Consensus       157 ~iWnv~tgeali~l~hpd~i~S------------------------~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  157 SIWNVGTGEALITLDHPDMVYS------------------------MSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             EEEeccCCceeeecCCCCeEEE------------------------EEeccCCceeeeecccceeEEEcCCCCcEeeecc
Confidence            9999999987666653343443                        4455689999999999999999999999998875


Q ss_pred             cC
Q psy8891         201 DM  202 (203)
Q Consensus       201 ~~  202 (203)
                      +|
T Consensus       213 ~h  214 (472)
T KOG0303|consen  213 AH  214 (472)
T ss_pred             cc
Confidence            54

>KOG0649|consensus

Probab=99.53  E-value=2.7e-12  Score=92.62  Aligned_cols=135  Identities=18%  Similarity=0.256  Sum_probs=88.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      ++-..|...-+++++.|+.+..||+++++..  +.++.. ...+..-.....++||+.||++||||.++++++..++.-.
T Consensus       119 am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk  198 (325)
T KOG0649|consen  119 AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK  198 (325)
T ss_pred             eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc
Confidence            3445677777888889999999999998753  333322 1122222334589999999999999999999988875421


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecC
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK  147 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~  147 (203)
                      .-..+  .|+... +       +-+...+...++.|+ ...+.+|++++.++...++.+.++..+.+..
T Consensus       199 ~~~~l--Rp~~g~-w-------igala~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~  256 (325)
T KOG0649|consen  199 NPNLL--RPDWGK-W-------IGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVD  256 (325)
T ss_pred             Chhhc--CcccCc-e-------eEEEeccCceEEecC-CCceeEEeccCCCceEEEecccceeEeeeec
Confidence            11111  111110 0       112222344666554 6799999999999999998888777666543

>KOG0642|consensus

Probab=99.53  E-value=1.1e-13  Score=109.53  Aligned_cols=178  Identities=21%  Similarity=0.288  Sum_probs=114.3

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCC--------CeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE--
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRST--------ETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--   70 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~--------~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~--   70 (203)
                      .|.+....|+|++.|+++++|+|+..        +..  +. +..++-.+++++++++++|||.||+|+.|++....-  
T Consensus       301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~  380 (577)
T KOG0642|consen  301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD  380 (577)
T ss_pred             hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc
Confidence            46677788999999999999999421        111  22 223344567888999999999999999997652110  


Q ss_pred             --------EEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce--EEEEeccce
Q psy8891          71 --------VRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--VRDIELHGK  139 (203)
Q Consensus        71 --------~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~--~~~~~~~~~  139 (203)
                              ...+.+| +.++.+                   .|+.....|++++.|+++|.|+.....+  ...-..++.
T Consensus       381 ds~dp~vl~~~l~Ghtdavw~l-------------------~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~  441 (577)
T KOG0642|consen  381 DSYDPSVLSGTLLGHTDAVWLL-------------------ALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGY  441 (577)
T ss_pred             cccCcchhccceeccccceeee-------------------eecccccceeeecCCceEEeeccCCcCccccCCccccCC
Confidence                    1111122 233333                   3444556899999999999999886665  222222334


Q ss_pred             EEEEEecCCcEEEEee--------------------------cCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         140 ITSLDLSKGKYYFVFA--------------------------EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       140 v~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                      ..++++...+..+...                          .+......+.++...|...+.+++-+|+.|+++|..++
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~  521 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG  521 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence            4445443322110000                          01112234456667788889999999999999999999


Q ss_pred             eeeeeec
Q psy8891         194 QVEAVLK  200 (203)
Q Consensus       194 ~~~~~~~  200 (203)
                      +++....
T Consensus       522 ~~l~s~~  528 (577)
T KOG0642|consen  522 KILHSMV  528 (577)
T ss_pred             ccchhee
Confidence            9887654

>KOG2096|consensus

Probab=99.51  E-value=2.1e-12  Score=96.40  Aligned_cols=152  Identities=19%  Similarity=0.314  Sum_probs=99.9

Q ss_pred             ceEEEEeCCCCEEEEecCCCeEEEEECCCceE-----EEeeeeCCeEEEEEecCCCceEEEecCCc-eEE----------
Q psy8891          39 NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK-----VRDIELHGKITSLDLSKGTETKFAGSSCN-DLV----------  102 (203)
Q Consensus        39 ~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~----------  102 (203)
                      ...++|+.+|+.|+|++.|+.||+||+++-..     ++..-.-+..+.+.|+||...++.....+ .+.          
T Consensus        89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG  168 (420)
T KOG2096|consen   89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG  168 (420)
T ss_pred             eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence            45578999999999999999999999976321     11111113457788888877655432221 111          


Q ss_pred             -------------------------EEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEeec
Q psy8891         103 -------------------------TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFAE  156 (203)
Q Consensus       103 -------------------------~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~  156 (203)
                                               -....+.+|.+++.|.+|-+||++ |+.+..+.... ...-..++|+..+++...
T Consensus       169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g  247 (420)
T KOG2096|consen  169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG  247 (420)
T ss_pred             CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEec
Confidence                                     112346799999999999999999 77776654331 122233445433222110


Q ss_pred             ---------------C-----------eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         157 ---------------G-----------FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       157 ---------------~-----------~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                                     |           ..++..+...+|+++....+|.|.||+.|+||.+
T Consensus       248 FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  248 FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence                           0           0122345678899999999999999999999976

>KOG4328|consensus

Probab=99.50  E-value=7.2e-13  Score=102.66  Aligned_cols=179  Identities=17%  Similarity=0.283  Sum_probs=109.1

Q ss_pred             ceEEcCCC--CEEEEEeCCCcEEEEeCCCCC-----e-EEe-cCc-CceEEEEeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891           2 CAKFLGDP--TKVVSGSCDRTLKIWDLRSTE-----T-KFA-GSS-CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         2 ~~~~~~~~--~~l~t~s~D~~v~lwdl~~~~-----~-~~~-~~~-~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      |+.|+|-.  +.++.|+.-|+|-+||+.+++     . .+. +.. ...+.+.+.+...+++.|+||+||.=|+......
T Consensus       191 ~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e  270 (498)
T KOG4328|consen  191 SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE  270 (498)
T ss_pred             EEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhH
Confidence            67888855  478899999999999996322     1 121 222 2333444446679999999999999998765321


Q ss_pred             Eeeee---CCeEEEEEecCCCceEEEecCCce------------------------EEEEcC-CCCEEEEeeCCCeEEEE
Q psy8891          72 RDIEL---HGKITSLDLSKGTETKFAGSSCND------------------------LVTYDG-AGTTIISGHFDKKVRFW  123 (203)
Q Consensus        72 ~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~-~~~~l~s~s~d~~i~iW  123 (203)
                      -.+..   ...+.++++..+...++++...+.                        -+.+.| .-.+++|+|-|++++||
T Consensus       271 ~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIW  350 (498)
T KOG4328|consen  271 EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIW  350 (498)
T ss_pred             HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeee
Confidence            11111   122444555554444443322221                        122333 24689999999999999


Q ss_pred             ECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC----CCceeeeee
Q psy8891         124 DFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC----NTEQVEAVL  199 (203)
Q Consensus       124 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~----~~~~~~~~~  199 (203)
                      |+|+-..-.+    .-+..               ..+...+..+.|+|.+..|+|.+.|.+|||||.    ..-++..+|
T Consensus       351 D~R~l~~K~s----p~lst---------------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  351 DLRQLRGKAS----PFLST---------------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             ehhhhcCCCC----cceec---------------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence            9985332111    00000               011123446778999888999999999999998    344444444

>KOG2919|consensus

Probab=99.50  E-value=1.1e-11  Score=92.62  Aligned_cols=198  Identities=19%  Similarity=0.272  Sum_probs=125.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--------eEE------ecCcCceE---EEE------eCCCCEEEEecCCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--------TKF------AGSSCNDL---VTY------DGAGTTIISGHFDK   58 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--------~~~------~~~~~~~~---~~~------~~~~~~l~s~~~D~   58 (203)
                      .+.|+|||..|++-+.|..+++|++....        ..+      .......+   +.+      .|+.+++++.+.|.
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence            47899999999999999999999986311        000      00111111   112      46778999999999


Q ss_pred             eEEEEECCCceEEEeeee---C---CeEEEEEecCCCceEEEecCCce------------------------------EE
Q psy8891          59 KVRFWDFRAEEKVRDIEL---H---GKITSLDLSKGTETKFAGSSCND------------------------------LV  102 (203)
Q Consensus        59 ~i~vwd~~~~~~~~~~~~---~---~~v~~~~~~~~~~~~~~~~~~~~------------------------------~~  102 (203)
                      -|++||.-+++.......   .   ....++.|++|+..+++|...+.                              ..
T Consensus       134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~  213 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF  213 (406)
T ss_pred             ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence            999999988876433321   1   23467888888888776543211                              23


Q ss_pred             EEcCC-CCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeecC--eeEE---------------ee
Q psy8891         103 TYDGA-GTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEG--FKVQ---------------CD  163 (203)
Q Consensus       103 ~~~~~-~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~--~~~~---------------~~  163 (203)
                      +|+|. ...++.+++..++-|+.-..+.++..+-.+ +.|+-+.+.+....+.+...  -++.               ..
T Consensus       214 a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh  293 (406)
T KOG2919|consen  214 AFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH  293 (406)
T ss_pred             eccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence            45553 457888888888888877666666544333 34666666554433332211  0000               00


Q ss_pred             e----EEEEE--EcCCCEEEEecCCCcEEEEeCCC-ceeeeee
Q psy8891         164 F----TRAVF--VVDDDYVAVGSIDGNIYVWDCNT-EQVEAVL  199 (203)
Q Consensus       164 ~----~~~~~--~~~~~~l~s~s~d~~v~~wd~~~-~~~~~~~  199 (203)
                      .    -++.|  .|++++|++|+.||.|++||++. |....++
T Consensus       294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~  336 (406)
T KOG2919|consen  294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT  336 (406)
T ss_pred             ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence            0    12333  47789999999999999999987 6645444

>KOG1007|consensus

Probab=99.49  E-value=1.3e-12  Score=96.26  Aligned_cols=148  Identities=20%  Similarity=0.383  Sum_probs=104.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---Eec------CcCceEEEEeC--CCCEEEEecCCCeEEEEECCCceE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAG------SSCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEEK   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~------~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~~   70 (203)
                      |+-|.|++..|++-. |..|.+|++.....+   ...      ...-....|+|  +++.+++. .|+++..||+|+..+
T Consensus       128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~  205 (370)
T KOG1007|consen  128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK  205 (370)
T ss_pred             eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh
Confidence            788999999999875 899999999864321   111      00111234665  56677665 688999999999887


Q ss_pred             EEeee-eC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEeccceEEEEEecC
Q psy8891          71 VRDIE-LH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDIELHGKITSLDLSK  147 (203)
Q Consensus        71 ~~~~~-~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~~~~~~~~~~~v~~~~~~~  147 (203)
                      ...++ .| ..|+.++++|..+                  .+|++|+.|+.|||||.|+. .+++++..|.+        
T Consensus       206 ~~sI~dAHgq~vrdlDfNpnkq------------------~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--------  259 (370)
T KOG1007|consen  206 NNSIEDAHGQRVRDLDFNPNKQ------------------HILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--------  259 (370)
T ss_pred             hcchhhhhcceeeeccCCCCce------------------EEEEEcCCCccEEEEeccCCCccccccCCCce--------
Confidence            66664 23 3589999998654                  47999999999999999854 34444444432        


Q ss_pred             CcEEEEeecCeeEEeeeEEEEEEcC-CCEEEEecCCCcEEEEeCCC
Q psy8891         148 GKYYFVFAEGFKVQCDFTRAVFVVD-DDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~v~~wd~~~  192 (203)
                                     .+..+.|.|. ++.+.||+.|..|.+|...+
T Consensus       260 ---------------WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  260 ---------------WVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             ---------------EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence                           2334556664 56789999999999998653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=8.7e-12  Score=100.86  Aligned_cols=179  Identities=15%  Similarity=0.118  Sum_probs=96.1

Q ss_pred             ceEEcCCCCEEEEEeCCC---cEEEEeCCCCCe--EEecCcCceEEEEeCCCCEEEEe-cCCCeEEEE--ECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDR---TLKIWDLRSTET--KFAGSSCNDLVTYDGAGTTIISG-HFDKKVRFW--DFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~---~v~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~l~s~-~~D~~i~vw--d~~~~~~~~~   73 (203)
                      +.+|+|||++|+.++.++   .|++||+.+++.  ............|+|+++.|+.+ +.++.+.||  |+..++.. .
T Consensus       208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~  286 (429)
T PRK01742        208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-Q  286 (429)
T ss_pred             cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-e
Confidence            568999999999887643   699999987653  22122223346899999988776 468877666  55444432 2


Q ss_pred             eeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCCC-ceEEEEeccceEEEEEecCCcE
Q psy8891          74 IELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAE-EKVRDIELHGKITSLDLSKGKY  150 (203)
Q Consensus        74 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~~-~~~~~~~~~~~v~~~~~~~~~~  150 (203)
                      +..+ ..+...                   .|+|||+.|+.++ .++..++|++... .....+....  ....++++..
T Consensus       287 lt~~~~~~~~~-------------------~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~  345 (429)
T PRK01742        287 LTSGAGNNTEP-------------------SWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGK  345 (429)
T ss_pred             eccCCCCcCCE-------------------EECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCC
Confidence            2221 223333                   3455555444333 3455555544321 1111111101  1122232221


Q ss_pred             EEEeec-----------Cee--E--EeeeEEEEEEcCCCEEEEecCCCcEEEEeC--CCceeeeeeccC
Q psy8891         151 YFVFAE-----------GFK--V--QCDFTRAVFVVDDDYVAVGSIDGNIYVWDC--NTEQVEAVLKDM  202 (203)
Q Consensus       151 ~~~~~~-----------~~~--~--~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~--~~~~~~~~~~~~  202 (203)
                      .++...           +..  .  ........++|++++|+.++.++..++|++  .+|+.++.+++|
T Consensus       346 ~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~  414 (429)
T PRK01742        346 TLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS  414 (429)
T ss_pred             EEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence            111100           000  0  000112457899999999999999998875  357888877643

>KOG1332|consensus

Probab=99.48  E-value=9e-13  Score=94.94  Aligned_cols=161  Identities=20%  Similarity=0.299  Sum_probs=105.0

Q ss_pred             CceEEcCCC--CEEEEEeCCCcEEEEeCCCC-C----eE-EecCcCceEEEEeCC---C-----------CEEEEecCCC
Q psy8891           1 MCAKFLGDP--TKVVSGSCDRTLKIWDLRST-E----TK-FAGSSCNDLVTYDGA---G-----------TTIISGHFDK   58 (203)
Q Consensus         1 ~~~~~~~~~--~~l~t~s~D~~v~lwdl~~~-~----~~-~~~~~~~~~~~~~~~---~-----------~~l~s~~~D~   58 (203)
                      ++++|.|.+  -.|++||.||+|.+.+.+.. .    .+ ..+......+.+.|.   |           ..|+|||.|.
T Consensus       106 NsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn  185 (299)
T KOG1332|consen  106 NSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN  185 (299)
T ss_pred             eeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc
Confidence            367777754  58999999999999988653 1    11 112212234555442   2           5699999999


Q ss_pred             eEEEEECCCce--EEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEE
Q psy8891          59 KVRFWDFRAEE--KVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDI  134 (203)
Q Consensus        59 ~i~vwd~~~~~--~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~~~~~~  134 (203)
                      .||||+...+.  ..++++.| +-|+.++++|....               --.+|+++|.||+|-||-.+.. ++-+.-
T Consensus       186 ~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl---------------~~s~iAS~SqDg~viIwt~~~e~e~wk~t  250 (299)
T KOG1332|consen  186 LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL---------------PKSTIASCSQDGTVIIWTKDEEYEPWKKT  250 (299)
T ss_pred             ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC---------------CceeeEEecCCCcEEEEEecCccCccccc
Confidence            99999998753  23445555 45888888874321               1138999999999999976632 111110


Q ss_pred             eccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC-ceeee
Q psy8891         135 ELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT-EQVEA  197 (203)
Q Consensus       135 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~-~~~~~  197 (203)
                      .++                     .+...+.++.+++.|..|+.++.|..|.+|.-+. |+-++
T Consensus       251 ll~---------------------~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~  293 (299)
T KOG1332|consen  251 LLE---------------------EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEE  293 (299)
T ss_pred             ccc---------------------cCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEE
Confidence            000                     0111234566778899999999999999998663 45544

>KOG1034|consensus

Probab=99.48  E-value=1.7e-12  Score=97.09  Aligned_cols=107  Identities=20%  Similarity=0.329  Sum_probs=79.0

Q ss_pred             ceEEcCCC----CEEEEEeCCCcEEEEeCCCCCeE----EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891           2 CAKFLGDP----TKVVSGSCDRTLKIWDLRSTETK----FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~----~~l~t~s~D~~v~lwdl~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~   73 (203)
                      .|+|+-|-    -.+|.|+.=|.||+.|+...+..    ..+...+.+-..+..+++|+|||.|.+||+|+++++.++-.
T Consensus        94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V  173 (385)
T KOG1034|consen   94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV  173 (385)
T ss_pred             EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE
Confidence            45665433    35778889999999999875542    12223344444455678999999999999999999998866


Q ss_pred             eee----CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          74 IEL----HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        74 ~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      +.+    .+.|.+++++.                   +|..|+|++.|.++++|++..
T Consensus       174 fGG~egHrdeVLSvD~~~-------------------~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  174 FGGVEGHRDEVLSVDFSL-------------------DGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             ecccccccCcEEEEEEcC-------------------CCCeeeccCCcceEEEEecCh
Confidence            642    35677777655                   556899999999999999874

>KOG0649|consensus

Probab=99.47  E-value=2.6e-12  Score=92.69  Aligned_cols=162  Identities=14%  Similarity=0.187  Sum_probs=101.1

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCC---CCe-------EEecCcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRS---TET-------KFAGSSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~---~~~-------~~~~~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      -+++|.++.|+.|+.+|+|-+..+..   +..       ....+.+ ..+....-....|+||+. |.|+-|..+.....
T Consensus        16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es   94 (325)
T KOG0649|consen   16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEES   94 (325)
T ss_pred             HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhh
Confidence            36789999999999999999999864   111       1111111 111111112468888876 99999987765431


Q ss_pred             -E-----eeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEE
Q psy8891          72 -R-----DIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLD  144 (203)
Q Consensus        72 -~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~  144 (203)
                       .     +...+..+-.           ...........+|..+-|+.++.|+.+.-||+.+|+-.+++..|. .+.++.
T Consensus        95 ~~~K~lwe~~~P~~~~~-----------~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   95 LATKRLWEVKIPMQVDA-----------VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             ccchhhhhhcCccccCc-----------ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence             1     1111000000           000111123345555567777789999999999998877777663 233322


Q ss_pred             ecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         145 LSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ..                        ..+..++||++||++|+||+++++.+++|+
T Consensus       164 ~R------------------------~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  164 GR------------------------NANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             ec------------------------ccCcceeecCCCccEEEEeccccceeEEec
Confidence            11                        134578899999999999999999999885

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.47  E-value=4.3e-12  Score=91.75  Aligned_cols=112  Identities=16%  Similarity=0.369  Sum_probs=80.4

Q ss_pred             ceEEcCCCCEEEE--EeCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCC---CeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVS--GSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFD---KKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t--~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++|+|+|+.++.  |..+..|.+||++..............+.|+|+|++|+.+|.+   |.|.+||++..+.+.+.+.
T Consensus        64 ~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~  143 (194)
T PF08662_consen   64 DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH  143 (194)
T ss_pred             EEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc
Confidence            5799999998644  5567899999997543332233334558899999999998754   6699999998777665543


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC------CCeEEEEECCCCceEEEE
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF------DKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------d~~i~iWd~~~~~~~~~~  134 (203)
                      . .+.                   .+.|+|+|+++++++.      |+.++||+.. |+.+...
T Consensus       144 ~-~~t-------------------~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  144 S-DAT-------------------DVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             C-cEE-------------------EEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            2 122                   3567888888888864      7889999985 5554443

>KOG1009|consensus

Probab=99.46  E-value=9.9e-13  Score=100.56  Aligned_cols=141  Identities=18%  Similarity=0.363  Sum_probs=91.6

Q ss_pred             CceEEcCCCC-EEEEEeCCCcEEEEeCCCCC-------eEE-----ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891           1 MCAKFLGDPT-KVVSGSCDRTLKIWDLRSTE-------TKF-----AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         1 ~~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~-------~~~-----~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      +++.|.++.. +|+||+.|..||+|-+...+       ..+     .+....+.++|+|+|+.|+||+++|.+.+|....
T Consensus        17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~   96 (434)
T KOG1009|consen   17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD   96 (434)
T ss_pred             EEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC
Confidence            3567788877 99999999999999886421       111     2334467789999999999999999999998653


Q ss_pred             ceEEEeeeeCCeEEEEEecCCC---ceEEEe-cCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEE
Q psy8891          68 EEKVRDIELHGKITSLDLSKGT---ETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITS  142 (203)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~  142 (203)
                      ....   ..+.   ..+.++..   .+.+.+ .....-.+|++++..+++++-|.++++||+..|+....+..|. .+..
T Consensus        97 ~~~~---~~d~---e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg  170 (434)
T KOG1009|consen   97 VRIF---DADT---EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG  170 (434)
T ss_pred             cCCc---cccc---hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence            1100   0000   00000000   000111 1112235789999999999999999999999998877665553 2444


Q ss_pred             EEecC
Q psy8891         143 LDLSK  147 (203)
Q Consensus       143 ~~~~~  147 (203)
                      +.+.+
T Consensus       171 vawDp  175 (434)
T KOG1009|consen  171 VAWDP  175 (434)
T ss_pred             eecch
Confidence            44443

>KOG1188|consensus

Probab=99.45  E-value=3.1e-12  Score=96.05  Aligned_cols=142  Identities=25%  Similarity=0.439  Sum_probs=93.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCe--EEecCc-CceEEEEeC--CCCEEEEecCCCeEEEEECCCceEEEeee--eCC--eE
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTET--KFAGSS-CNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEEKVRDIE--LHG--KI   80 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~--~~~~~~-~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~~~~~~~--~~~--~v   80 (203)
                      ..++++-..|+||+||..+++.  .+.+++ ....+.+..  .+..+.||+.||+||+||+|.......+.  .+.  +.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4577777899999999988543  333332 233455544  56799999999999999999876543332  222  34


Q ss_pred             EEEEecCCCceEEEecCCceEEEEcCCCCEEEEee----CCCeEEEEECCCCce-EEEEeccceEEEEEecCCcEEEEee
Q psy8891          81 TSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH----FDKKVRFWDFRAEEK-VRDIELHGKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s----~d~~i~iWd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~  155 (203)
                      .+++.+.                   .+++++.|.    .|-.|.+||+|+.+. +..+..                   
T Consensus       121 ~~ld~nc-------------------k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-------------------  162 (376)
T KOG1188|consen  121 ICLDLNC-------------------KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-------------------  162 (376)
T ss_pred             eEeeccC-------------------cCCeEEeccccccCceEEEEEEeccccchhhhhhh-------------------
Confidence            4444432                   233455543    266899999997654 322211                   


Q ss_pred             cCeeEEeeeEEEEEEcC-CCEEEEecCCCcEEEEeCCC
Q psy8891         156 EGFKVQCDFTRAVFVVD-DDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       156 ~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~v~~wd~~~  192 (203)
                         .+.-+++.+.|+|. +..|+|||.||-|.+||++.
T Consensus       163 ---SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  163 ---SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             ---hccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence               11225566777774 68999999999999999874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.44  E-value=3.8e-11  Score=86.84  Aligned_cols=151  Identities=16%  Similarity=0.300  Sum_probs=97.1

Q ss_pred             ceEEcCCCCEEEE-Ee---------CCCcEEEEeCCCC--Ce-E--EecCcCceEEEEeCCCCEE--EEecCCCeEEEEE
Q psy8891           2 CAKFLGDPTKVVS-GS---------CDRTLKIWDLRST--ET-K--FAGSSCNDLVTYDGAGTTI--ISGHFDKKVRFWD   64 (203)
Q Consensus         2 ~~~~~~~~~~l~t-~s---------~D~~v~lwdl~~~--~~-~--~~~~~~~~~~~~~~~~~~l--~s~~~D~~i~vwd   64 (203)
                      .+.|+++|+.|+. ..         .-+...+|-++..  .. .  .........+.|+|+++.+  ++|..++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            3678999986653 33         1233555555331  11 1  1112224557899999875  4456788999999


Q ss_pred             CCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEeccceEE
Q psy8891          65 FRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD---KKVRFWDFRAEEKVRDIELHGKIT  141 (203)
Q Consensus        65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---~~i~iWd~~~~~~~~~~~~~~~v~  141 (203)
                      ++ .+.+..+.. ..+.                   .+.|+|+|++|+.++.+   |.|.+||+++.+.+...+..    
T Consensus        90 ~~-~~~i~~~~~-~~~n-------------------~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----  144 (194)
T PF08662_consen   90 VK-GKKIFSFGT-QPRN-------------------TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----  144 (194)
T ss_pred             Cc-ccEeEeecC-CCce-------------------EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC----
Confidence            96 444444321 2222                   25688888999998765   56999999977766554322    


Q ss_pred             EEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC------CCcEEEEeCCCceeeeee
Q psy8891         142 SLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI------DGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------d~~v~~wd~~~~~~~~~~  199 (203)
                                           ..+.+.++|+|++|+++..      |..++||+.. |+.+...
T Consensus       145 ---------------------~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  145 ---------------------DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             ---------------------cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence                                 1235567899999998864      8899999986 6665543

>KOG0307|consensus

Probab=99.42  E-value=6.4e-13  Score=112.55  Aligned_cols=162  Identities=17%  Similarity=0.242  Sum_probs=104.7

Q ss_pred             ceEEcCCCCE----EEEEeCCCcEEEEeCCCC---Ce------EEecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCC
Q psy8891           2 CAKFLGDPTK----VVSGSCDRTLKIWDLRST---ET------KFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         2 ~~~~~~~~~~----l~t~s~D~~v~lwdl~~~---~~------~~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      ..+|.+.+..    |+.|.+||+|-+||....   ..      .-.+...+..+.|.+ +++.|+||+.||.|.|||+..
T Consensus        69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn  148 (1049)
T KOG0307|consen   69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK  148 (1049)
T ss_pred             eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC
Confidence            3567666655    899999999999998652   11      111222233355665 456999999999999999987


Q ss_pred             ceEEEee---eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEE
Q psy8891          68 EEKVRDI---ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLD  144 (203)
Q Consensus        68 ~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~  144 (203)
                      .+...+.   ...+.|.+++|+...                  .++|++++.++++-|||+|..+++-.+.....     
T Consensus       149 ~~tP~~~~~~~~~~eI~~lsWNrkv------------------qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~-----  205 (1049)
T KOG0307|consen  149 PETPFTPGSQAPPSEIKCLSWNRKV------------------SHILASGSPSGRAVIWDLRKKKPIIKLSDTPG-----  205 (1049)
T ss_pred             cCCCCCCCCCCCcccceEeccchhh------------------hHHhhccCCCCCceeccccCCCcccccccCCC-----
Confidence            5543333   223567777776533                  35899999999999999998776655543322     


Q ss_pred             ecCCcEEEEeecCeeEEeeeEEEEEEcCC-CEEEEecCCC---cEEEEeCC-CceeeeeeccC
Q psy8891         145 LSKGKYYFVFAEGFKVQCDFTRAVFVVDD-DYVAVGSIDG---NIYVWDCN-TEQVEAVLKDM  202 (203)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~---~v~~wd~~-~~~~~~~~~~~  202 (203)
                          +            +.+..+.++|++ ..+++++.|.   .|.+||++ ...+++++++|
T Consensus       206 ----~------------~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H  252 (1049)
T KOG0307|consen  206 ----R------------MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH  252 (1049)
T ss_pred             ----c------------cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence                0            112223344443 3455665543   59999976 35666776554

>KOG1007|consensus

Probab=99.42  E-value=8.2e-12  Score=92.11  Aligned_cols=107  Identities=22%  Similarity=0.354  Sum_probs=78.0

Q ss_pred             ceEEcC--CCCEEEEEeCCCcEEEEeCCCCCeEE----ecCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCce-EEEe
Q psy8891           2 CAKFLG--DPTKVVSGSCDRTLKIWDLRSTETKF----AGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEE-KVRD   73 (203)
Q Consensus         2 ~~~~~~--~~~~l~t~s~D~~v~lwdl~~~~~~~----~~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~-~~~~   73 (203)
                      +.+|+|  |+.++++.+ |++++.||+++.....    .+.....-+.+.|+-+ +|+|||+||.|||||.|..+ ++++
T Consensus       175 sg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e  253 (370)
T KOG1007|consen  175 SGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE  253 (370)
T ss_pred             ccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence            356776  888888886 7999999999754321    1122222345666544 79999999999999998765 5677


Q ss_pred             eeeCCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          74 IELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        74 ~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      +..|.. |.++-++|..+                  +.|++++.|.+|.+|...+
T Consensus       254 l~~HsHWvW~VRfn~~hd------------------qLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHD------------------QLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             cCCCceEEEEEEecCccc------------------eEEEecCCCceeEEEeccc
Confidence            776654 77777777544                  4789999999999998654

>KOG1034|consensus

Probab=99.41  E-value=5.5e-12  Score=94.35  Aligned_cols=112  Identities=17%  Similarity=0.313  Sum_probs=86.8

Q ss_pred             CCEEEEecCCCeEEEEECCCceEEEeeeeCC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        48 ~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                      +..|+.||.-|.|||.|+.+++..+.+..|| +|..+.++|+..                  ++|+++|.|.+||+||++
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~------------------qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP------------------QLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCC------------------cEEEEecCCceEEEEecc
Confidence            3488999999999999999999988888775 577777777543                  589999999999999999


Q ss_pred             CCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         127 AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      ++.++-.+-.-.                    .+...+..+.|++++++|++|+.|..+++|+++..+...
T Consensus       167 ~~~Cv~VfGG~e--------------------gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~  217 (385)
T KOG1034|consen  167 TDVCVAVFGGVE--------------------GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN  217 (385)
T ss_pred             CCeEEEEecccc--------------------cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence            998876653210                    011123344566799999999999999999999655443

>KOG1445|consensus

Probab=99.40  E-value=2.5e-12  Score=103.65  Aligned_cols=147  Identities=16%  Similarity=0.316  Sum_probs=100.1

Q ss_pred             EcCCCCEEEE--EeCCCcEEEEeCCCCCeEE-------ecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCce-----
Q psy8891           5 FLGDPTKVVS--GSCDRTLKIWDLRSTETKF-------AGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEE-----   69 (203)
Q Consensus         5 ~~~~~~~l~t--~s~D~~v~lwdl~~~~~~~-------~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~-----   69 (203)
                      |..+.++++.  ++.-|.|-||++...-.+.       .......-+.|+| |.+.|+.+..||.|++|.+..+.     
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            3445555543  4556999999997632111       1111112234665 66799999999999999986543     


Q ss_pred             --EEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEe
Q psy8891          70 --KVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDL  145 (203)
Q Consensus        70 --~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~  145 (203)
                        +...+..| .+|+++-|+|-..                  ..|+++++|.+|++||++++..-..+..| .+|.++  
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAa------------------dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~--  726 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAA------------------DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGI--  726 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhh------------------hHhhhhhccceeeeeehhhhhhhheeccCcCceeEE--
Confidence              22334444 4688888887322                  37999999999999999987654444443 334443  


Q ss_pred             cCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         146 SKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                                            +.+|+|+.++|-+.||+|++|+.+++
T Consensus       727 ----------------------AWSpdGr~~AtVcKDg~~rVy~Prs~  752 (1012)
T KOG1445|consen  727 ----------------------AWSPDGRRIATVCKDGTLRVYEPRSR  752 (1012)
T ss_pred             ----------------------EECCCCcceeeeecCceEEEeCCCCC
Confidence                                  45579999999999999999998754

>KOG4283|consensus

Probab=99.39  E-value=2.4e-11  Score=89.96  Aligned_cols=180  Identities=18%  Similarity=0.317  Sum_probs=107.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCeEE--ecCcC-ceEEEEeCCCC-EEEEecCCCeEEEEECCCc-eEEEeeeeCCeEEEEE
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTETKF--AGSSC-NDLVTYDGAGT-TIISGHFDKKVRFWDFRAE-EKVRDIELHGKITSLD   84 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~-~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~-~~~~~~~~~~~v~~~~   84 (203)
                      ..+++|-.|-.|++.|+..+....  .++.. ...+.|+|..+ .|+|||.||.||+||++.- .+...+..|...+.-.
T Consensus       159 cLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~  238 (397)
T KOG4283|consen  159 CLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI  238 (397)
T ss_pred             eEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc
Confidence            468889999999999999876533  33322 33456777655 7899999999999999865 5666665553211100


Q ss_pred             ecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceE-EEE-------eccceEEEEEecCCcE------
Q psy8891          85 LSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV-RDI-------ELHGKITSLDLSKGKY------  150 (203)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~-~~~-------~~~~~v~~~~~~~~~~------  150 (203)
                      +    ++..+......-.+|+.++.++++++.|.++++|+..+|+.. +++       ..+..+..-+...+-+      
T Consensus       239 ~----~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~  314 (397)
T KOG4283|consen  239 L----KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND  314 (397)
T ss_pred             c----cccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecC
Confidence            0    001111111223578889999999999999999999877531 111       0010011001111111      


Q ss_pred             ----EEEeecCeeE------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         151 ----YFVFAEGFKV------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       151 ----~~~~~~~~~~------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                          ++...++..+      ...+.++.+-|+-+...+|..|+++..|-....
T Consensus       315 ~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l~  367 (397)
T KOG4283|consen  315 GSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPALK  367 (397)
T ss_pred             CeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccccc
Confidence                1111122111      223445566677778999999999999986433

>KOG2919|consensus

Probab=99.38  E-value=4.1e-11  Score=89.69  Aligned_cols=157  Identities=17%  Similarity=0.336  Sum_probs=113.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCC-CCC------eEEe----cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCce
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLR-STE------TKFA----GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~-~~~------~~~~----~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~   69 (203)
                      |+.|+|||.+|+.| ....||++|+. .+.      +..+    ........+++| +...++.|+.-..+-||.-..+.
T Consensus       163 sL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~  241 (406)
T KOG2919|consen  163 SLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR  241 (406)
T ss_pred             eEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC
Confidence            68999999999987 57999999993 322      1111    122233455666 45599999999999999887777


Q ss_pred             EEEeeeeC-CeEEEEEecCCCceEEEecCCc-eEEEE---------------------------cCCCCEEEEeeCCCeE
Q psy8891          70 KVRDIELH-GKITSLDLSKGTETKFAGSSCN-DLVTY---------------------------DGAGTTIISGHFDKKV  120 (203)
Q Consensus        70 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~-~~~~~---------------------------~~~~~~l~s~s~d~~i  120 (203)
                      ++..+..| +.|+-+.+++++..++.|..+. .+.+|                           +|.|++|++|+.||.|
T Consensus       242 pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V  321 (406)
T KOG2919|consen  242 PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSV  321 (406)
T ss_pred             ceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccE
Confidence            77776655 6799999999999988876543 23332                           4679999999999999


Q ss_pred             EEEECCC-CceEEEEecc-ceEEEEEecCCcEEEEeecCee
Q psy8891         121 RFWDFRA-EEKVRDIELH-GKITSLDLSKGKYYFVFAEGFK  159 (203)
Q Consensus       121 ~iWd~~~-~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~  159 (203)
                      ++||+.. ++....+..+ ..++.++++|...++....|.+
T Consensus       322 ~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  322 RVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             EEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence            9999987 5544444333 4577788887766665555544

>KOG1524|consensus

Probab=99.37  E-value=3e-11  Score=95.79  Aligned_cols=168  Identities=16%  Similarity=0.221  Sum_probs=107.3

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee-eC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE-LH   77 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~-~~   77 (203)
                      +|.||+|||.-|+|+++||.||+|.-..-.  ...........++|.|+.+.++-|-. +.+.|=.+.....+-..+ ++
T Consensus       108 ~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHD  186 (737)
T KOG1524|consen  108 SSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHD  186 (737)
T ss_pred             hhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccC
Confidence            478999999999999999999999764321  11222333456789888775555432 344444555443332333 33


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEee-
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFA-  155 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~-  155 (203)
                      +-|.++++                   ++.+..|++|+.|-+.++||-. |.++.+-..+ -.|+++++.++..+.+-. 
T Consensus       187 GiiL~~~W-------------------~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~  246 (737)
T KOG1524|consen  187 GLVLSLSW-------------------STQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSY  246 (737)
T ss_pred             cEEEEeec-------------------CccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeee
Confidence            55666554                   4466799999999999999976 3444333333 469999998874333211 


Q ss_pred             cCee----EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         156 EGFK----VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       156 ~~~~----~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      .-.+    ....+-.+..++||..++.|+..|.+.+=.
T Consensus       247 nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  247 NTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             eeeeecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence            1111    122344566789999999999998876543

>KOG1539|consensus

Probab=99.37  E-value=9.3e-11  Score=97.02  Aligned_cols=169  Identities=17%  Similarity=0.285  Sum_probs=117.2

Q ss_pred             EEEEeCCCcEEEEeCCCCC---eEEecC------cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee----eeCC
Q psy8891          12 VVSGSCDRTLKIWDLRSTE---TKFAGS------SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI----ELHG   78 (203)
Q Consensus        12 l~t~s~D~~v~lwdl~~~~---~~~~~~------~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~----~~~~   78 (203)
                      ++.--.+...+.|+.+...   ..+...      .....++.++=|+..+-|...|+|-+|+++++-..+.+    ...+
T Consensus       415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~  494 (910)
T KOG1539|consen  415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG  494 (910)
T ss_pred             eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence            3444456778999997632   222111      11234567777889999999999999999999876666    2346


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCC---------c
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKG---------K  149 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~---------~  149 (203)
                      +|+.++...                   .++.+++++.+|.+++||......+..+.+...+..+..+..         .
T Consensus       495 ~V~gla~D~-------------------~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd  555 (910)
T KOG1539|consen  495 EVTGLAVDG-------------------TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD  555 (910)
T ss_pred             ceeEEEecC-------------------CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence            677766542                   346899999999999999998887777766555444322211         1


Q ss_pred             -EEEEeec--------CeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         150 -YYFVFAE--------GFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       150 -~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                       .+.+...        -..+...++...|+|||++|++++.|++||+||+-++.++-.+
T Consensus       556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence             1111111        1123346778899999999999999999999999999988755

>KOG1188|consensus

Probab=99.35  E-value=4.6e-11  Score=89.83  Aligned_cols=156  Identities=21%  Similarity=0.398  Sum_probs=101.4

Q ss_pred             eEEcC--CCCEEEEEeCCCcEEEEeCCCCCe----EEecCcCceEEEEeC--CCCEEEEec----CCCeEEEEECCCceE
Q psy8891           3 AKFLG--DPTKVVSGSCDRTLKIWDLRSTET----KFAGSSCNDLVTYDG--AGTTIISGH----FDKKVRFWDFRAEEK   70 (203)
Q Consensus         3 ~~~~~--~~~~l~t~s~D~~v~lwdl~~~~~----~~~~~~~~~~~~~~~--~~~~l~s~~----~D~~i~vwd~~~~~~   70 (203)
                      ++|..  .+..+.+|+.||+||+||++....    .....+.....+++.  ..+.+++|.    .|-.+.+||+|..+.
T Consensus        76 vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq  155 (376)
T KOG1188|consen   76 VRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ  155 (376)
T ss_pred             eEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc
Confidence            56755  455789999999999999987432    222333233344444  445666653    467899999998876


Q ss_pred             -EEeee--eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce----EEEEeccceEEEE
Q psy8891          71 -VRDIE--LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK----VRDIELHGKITSL  143 (203)
Q Consensus        71 -~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~----~~~~~~~~~v~~~  143 (203)
                       ++.+.  ++..|+++.|+|...                  ..|+|||.||-|.++|+...+-    ..++.....|.. 
T Consensus       156 ~l~~~~eSH~DDVT~lrFHP~~p------------------nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~-  216 (376)
T KOG1188|consen  156 LLRQLNESHNDDVTQLRFHPSDP------------------NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHL-  216 (376)
T ss_pred             hhhhhhhhccCcceeEEecCCCC------------------CeEEeecccceEEeeecCCCcchhhHHHhhcccceeee-
Confidence             54442  346789988888533                  5899999999999999975421    112221112222 


Q ss_pred             EecCCcEEEEeecCeeEEeeeEEEEEEcC-CCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         144 DLSKGKYYFVFAEGFKVQCDFTRAVFVVD-DDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                             +.+..+ .+.+.+-+..++..+|+++.+.++..++
T Consensus       217 -----------------------igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  217 -----------------------IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             -----------------------eeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence                                   222222 2457777889999999999887665543

>KOG2048|consensus

Probab=99.35  E-value=3.5e-10  Score=91.68  Aligned_cols=167  Identities=17%  Similarity=0.229  Sum_probs=122.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee---e
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI---E   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~---~   75 (203)
                      +.+|+ ++.+|+|.+.+|+|.-||+.+.+.+....   ......+..|.+..++-|.+||.++.++...++.+...   +
T Consensus        74 ~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen   74 SLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             eEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence            35677 77889999999999999999877654322   22233456677788999999998888888777654332   3


Q ss_pred             eCCeEEEEEecCCCceEEEecCCceEEEEcCC------------------------------CCEEEEeeCCCeEEEEEC
Q psy8891          76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGA------------------------------GTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~l~s~s~d~~i~iWd~  125 (203)
                      ..+.+.++++++++..++.|+....+..|+..                              ..+|++|..-|+|++||.
T Consensus       153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~  232 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDS  232 (691)
T ss_pred             ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcc
Confidence            45789999999999888888877655544321                              237899999999999999


Q ss_pred             CCCceEEEEecc-ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         126 RAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       126 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                      ..++.++.+..+ ..|.++.                        -.++++++++++.|+.|..+...++
T Consensus       233 ~~gTLiqS~~~h~adVl~La------------------------v~~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  233 IFGTLIQSHSCHDADVLALA------------------------VADNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             cCcchhhhhhhhhcceeEEE------------------------EcCCCCeEEEccCCCceEEEEecCC
Confidence            988877766544 2343333                        3346678888889998888877654

>KOG2445|consensus

Probab=99.35  E-value=3.9e-11  Score=89.16  Aligned_cols=118  Identities=19%  Similarity=0.347  Sum_probs=77.9

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEECCCceEEEee----ee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee
Q psy8891          41 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI----EL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH  115 (203)
Q Consensus        41 ~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~----~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  115 (203)
                      .+.|++.|+.+++|+.|++++|||.+.......+    +. .+.|..+.+.+.                 .-|+.+|+++
T Consensus        18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP-----------------EfGqvvA~cS   80 (361)
T KOG2445|consen   18 DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP-----------------EFGQVVATCS   80 (361)
T ss_pred             eeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc-----------------cccceEEEEe
Confidence            3678899999999999999999998665543333    22 355666666542                 2478999999


Q ss_pred             CCCeEEEEECCCCceEEEEeccc--eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcC--CCEEEEecCCCcEEEEeCC
Q psy8891         116 FDKKVRFWDFRAEEKVRDIELHG--KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVD--DDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       116 ~d~~i~iWd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s~d~~v~~wd~~  191 (203)
                      +|++++||.-.    .+..+.++  .+..-.+...            ...++.+.|.|.  |-.+++++.||.+|||++-
T Consensus        81 ~Drtv~iWEE~----~~~~~~~~~~Wv~~ttl~Ds------------rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~  144 (361)
T KOG2445|consen   81 YDRTVSIWEEQ----EKSEEAHGRRWVRRTTLVDS------------RSSVTDVKFAPKHLGLKLAAASADGILRIYEAP  144 (361)
T ss_pred             cCCceeeeeec----ccccccccceeEEEEEeecC------------CcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence            99999999742    11122211  1111111111            113455667664  6689999999999999964

>KOG0650|consensus

Probab=99.34  E-value=9.1e-11  Score=94.06  Aligned_cols=47  Identities=19%  Similarity=0.186  Sum_probs=33.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--cCcCceEEEEeCCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--GSSCNDLVTYDGAG   48 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~   48 (203)
                      |+.-.|.|.+|++||.||+||+|.+.++.+...  .......++|.|.+
T Consensus       405 ~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~  453 (733)
T KOG0650|consen  405 SISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLS  453 (733)
T ss_pred             EEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCC
Confidence            455578999999999999999999999886432  12223345555543

>KOG2106|consensus

Probab=99.32  E-value=7.9e-10  Score=87.24  Aligned_cols=167  Identities=22%  Similarity=0.373  Sum_probs=106.5

Q ss_pred             ceEEcCCCC-EEEEEeCCCcEEEEeCCCCCeE-----EecC--cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891           2 CAKFLGDPT-KVVSGSCDRTLKIWDLRSTETK-----FAGS--SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~-----~~~~--~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~   73 (203)
                      .+.|+|-+. .++|.+ -+.+.+|+++.+...     +...  .....++|.+++ -+++|..+|+|.||+.+.....+.
T Consensus       205 ~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~  282 (626)
T KOG2106|consen  205 LATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQ  282 (626)
T ss_pred             EEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeE
Confidence            367888554 556665 599999999874421     2211  223446677765 788999999999999877665443


Q ss_pred             e-eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc---ceEEEEEecCCc
Q psy8891          74 I-ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH---GKITSLDLSKGK  149 (203)
Q Consensus        74 ~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~~  149 (203)
                      . .+++.|.++....++                    .|+||+.|++|..|| ...+.++.++++   +.+..+.-..+.
T Consensus       283 ~~aH~ggv~~L~~lr~G--------------------tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d  341 (626)
T KOG2106|consen  283 VHAHDGGVFSLCMLRDG--------------------TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD  341 (626)
T ss_pred             eeecCCceEEEEEecCc--------------------cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc
Confidence            3 344667777665543                    578899999999999 555556655554   335544433333


Q ss_pred             EEEEee----------cCee--EE---eeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         150 YYFVFA----------EGFK--VQ---CDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       150 ~~~~~~----------~~~~--~~---~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      .+.-..          .++.  ++   ....-.+..|...+|+|++.|+.+++|+-+
T Consensus       342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~  398 (626)
T KOG2106|consen  342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH  398 (626)
T ss_pred             EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCC
Confidence            211110          1111  11   122345567888899999999999999933

>KOG1445|consensus

Probab=99.31  E-value=1.1e-11  Score=100.14  Aligned_cols=108  Identities=16%  Similarity=0.338  Sum_probs=78.1

Q ss_pred             eEEcC-CCCEEEEEeCCCcEEEEeCCCC---------CeEEe-cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceE
Q psy8891           3 AKFLG-DPTKVVSGSCDRTLKIWDLRST---------ETKFA-GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEK   70 (203)
Q Consensus         3 ~~~~~-~~~~l~t~s~D~~v~lwdl~~~---------~~~~~-~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~   70 (203)
                      .+|.| |..+|+.+..||.|++|.+...         +.... +..-...+.|.| ..+.|++++.|.+|++||++.++.
T Consensus       633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~  712 (1012)
T KOG1445|consen  633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL  712 (1012)
T ss_pred             cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh
Confidence            34555 6778999999999999998641         11111 111123345555 446899999999999999998876


Q ss_pred             EEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891          71 VRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        71 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                      --.+..| +.|..++                   |+|+|+.+++...|++|++++.++++
T Consensus       713 ~~~l~gHtdqIf~~A-------------------WSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  713 YSRLVGHTDQIFGIA-------------------WSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             hheeccCcCceeEEE-------------------ECCCCcceeeeecCceEEEeCCCCCC
Confidence            4444443 5566654                   66788899999999999999998764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.31  E-value=1.3e-09  Score=85.89  Aligned_cols=157  Identities=29%  Similarity=0.549  Sum_probs=106.9

Q ss_pred             ceEEcCCCCEEEEEeC-CCcEEEEeCCCCCeE--Eec-CcCceEEEEeCCCC-EEEEecCCCeEEEEECCCceEEE-eee
Q psy8891           2 CAKFLGDPTKVVSGSC-DRTLKIWDLRSTETK--FAG-SSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEEKVR-DIE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-D~~v~lwdl~~~~~~--~~~-~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~~~~-~~~   75 (203)
                      ++.|+|++..+++++. |+.+++|++......  ... ......+.+.|++. .+++++.|+.|++||...+.... .+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~  239 (466)
T COG2319         160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS  239 (466)
T ss_pred             EEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC
Confidence            4789999999999885 999999999864332  222 22234466778877 66666999999999988665554 233


Q ss_pred             eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce-EEEEeccceEEEEEecCCcEEEEe
Q psy8891          76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK-VRDIELHGKITSLDLSKGKYYFVF  154 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~  154 (203)
                      .+....                   +..|++++..+++++.|+.+++||.+.... ......+                 
T Consensus       240 ~~~~~~-------------------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----------------  283 (466)
T COG2319         240 GHSDSV-------------------VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-----------------  283 (466)
T ss_pred             CCCcce-------------------eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC-----------------
Confidence            322111                   114677777888999999999999986554 2222111                 


Q ss_pred             ecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         155 AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                            ...+....+.|++..+++++.|+.+++||..+........
T Consensus       284 ------~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  323 (466)
T COG2319         284 ------SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT  323 (466)
T ss_pred             ------CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence                  0112233566777888889999999999988777666543

>KOG1009|consensus

Probab=99.30  E-value=2.7e-11  Score=92.84  Aligned_cols=112  Identities=18%  Similarity=0.329  Sum_probs=81.9

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCC--------C-----CCeE---E-ecCcCceE--EEEeCCCCEEEEecCCCeEE
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLR--------S-----TETK---F-AGSSCNDL--VTYDGAGTTIISGHFDKKVR   61 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~--------~-----~~~~---~-~~~~~~~~--~~~~~~~~~l~s~~~D~~i~   61 (203)
                      ++|||+|+|..|+||+.+|+|.+|-..        +     .+..   . -..+..++  ++|.++++.+++++.|..++
T Consensus        69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~  148 (434)
T KOG1009|consen   69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVR  148 (434)
T ss_pred             EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEE
Confidence            479999999999999999999999765        1     0000   0 01111222  46889999999999999999


Q ss_pred             EEECCCceEEEeeeeCCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceE
Q psy8891          62 FWDFRAEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV  131 (203)
Q Consensus        62 vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~  131 (203)
                      +||+..+.....+..|.. +..                   ++|+|..+++++-+.|+..+...+...+.+
T Consensus       149 l~Dv~~G~l~~~~~dh~~yvqg-------------------vawDpl~qyv~s~s~dr~~~~~~~~~~~~~  200 (434)
T KOG1009|consen  149 LWDVHAGQLLAILDDHEHYVQG-------------------VAWDPLNQYVASKSSDRHPEGFSAKLKQVI  200 (434)
T ss_pred             EEEeccceeEeeccccccccce-------------------eecchhhhhhhhhccCcccceeeeeeeeee
Confidence            999999988766655432 222                   457777789999999997777776544443

>KOG1538|consensus

Probab=99.27  E-value=1.1e-09  Score=89.31  Aligned_cols=188  Identities=18%  Similarity=0.237  Sum_probs=123.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      .++|.|||..|+-+. +..+.+||...+...  .+++ ..+..++|+.+|+.++||+.|+.+-+|.-.-+..+ ...+..
T Consensus        17 d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kYSH~D   94 (1081)
T KOG1538|consen   17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KYSHND   94 (1081)
T ss_pred             eeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-eeccCC
Confidence            578999999988774 567889999875532  2233 23456789999999999999999999986544433 234456


Q ss_pred             eEEEEEecCCCceEEEecC--------------------CceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe---
Q psy8891          79 KITSLDLSKGTETKFAGSS--------------------CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE---  135 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~---  135 (203)
                      .|.++.|+|-...++..+.                    -.....|.-||++++-|-.||+|.+-+-...+.++.-.   
T Consensus        95 ~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg  174 (1081)
T KOG1538|consen   95 AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGG  174 (1081)
T ss_pred             eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCC
Confidence            7899999885443322110                    01234688999999999999999998755333333222   


Q ss_pred             ccceEEEEEecCCcE------EEEe----------ecCeeE------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         136 LHGKITSLDLSKGKY------YFVF----------AEGFKV------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       136 ~~~~v~~~~~~~~~~------~~~~----------~~~~~~------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ..++|-++.+++++-      +.+.          ..|..+      ..+.-++.+.++|.++..|+.|+.+++|--+
T Consensus       175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~  252 (1081)
T KOG1538|consen  175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD  252 (1081)
T ss_pred             CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence            124566666655321      1000          111111      1123345678899999999999999999744

>KOG1517|consensus

Probab=99.27  E-value=1.6e-10  Score=98.04  Aligned_cols=147  Identities=22%  Similarity=0.298  Sum_probs=94.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCC-----CCeEE----------ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRS-----TETKF----------AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~-----~~~~~----------~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~   72 (203)
                      |..++++||.||.||+|+--.     .+...          .....+.++.|.++..+|+++|.-..|||||+..+...+
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence            567899999999999996321     11110          011223456777777788888889999999998887776


Q ss_pred             eeeeCC--eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEeccceEEEEEecC
Q psy8891          73 DIELHG--KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VRDIELHGKITSLDLSK  147 (203)
Q Consensus        73 ~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~---~~~~~~~~~v~~~~~~~  147 (203)
                      .+....  .++++.-                  ....|.+|++|-.||.||+||.|...+   +.....+....      
T Consensus      1202 diP~~s~t~vTaLS~------------------~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~------ 1257 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSA------------------DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE------ 1257 (1387)
T ss_pred             ecccCCCccceeecc------------------cccCCceEEEeecCCceEEeecccCCccccceeecccCCcc------
Confidence            654321  1322211                  223478999999999999999986543   22222221100      


Q ss_pred             CcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEecCCCcEEEEeCCCc
Q psy8891         148 GKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~v~~wd~~~~  193 (203)
                                     .+..+.+-+.|- .|++||.||.|++||++..
T Consensus      1258 ---------------~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1258 ---------------PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ---------------cceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence                           012222333333 5999999999999999863

>KOG0644|consensus

Probab=99.26  E-value=7.5e-12  Score=103.55  Aligned_cols=103  Identities=26%  Similarity=0.420  Sum_probs=82.2

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcC---ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSC---NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      ||+.|...|.+++|||.|..||||..++..+......+   ..-.+.+.++-.++++|.|.-|++|.++++.++..+.+|
T Consensus       194 yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh  273 (1113)
T KOG0644|consen  194 YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGH  273 (1113)
T ss_pred             eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcc
Confidence            68999999999999999999999998776654332221   112344445568899999999999999999998887766


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                       |.|++++|+|                       ..+.+.||++++||.+
T Consensus       274 tgavtaiafsP-----------------------~~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  274 TGAVTAIAFSP-----------------------RASSSDDGTCRIWDAR  300 (1113)
T ss_pred             ccceeeeccCc-----------------------cccCCCCCceEecccc
Confidence             7899999987                       2366789999999987

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=2.6e-09  Score=86.46  Aligned_cols=90  Identities=10%  Similarity=0.057  Sum_probs=56.1

Q ss_pred             ceEEcCCCCEEEEEeC---CCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEe-cCCC--eEEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSC---DRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISG-HFDK--KVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~---D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~-~~D~--~i~vwd~~~~~~~~~   73 (203)
                      +.+|+|||++|+..+.   +..+.+||+.+++...  ..........|+|+++.|+.. +.++  .|.+||+.+++..+.
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l  282 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV  282 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc
Confidence            5689999999886543   4579999998765322  122222346799999977654 4454  588999987765433


Q ss_pred             eeeCCeEEEEEecCCCce
Q psy8891          74 IELHGKITSLDLSKGTET   91 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~   91 (203)
                      ...+..+....++|++..
T Consensus       283 t~~~~~~~~~~wSPDG~~  300 (429)
T PRK03629        283 TDGRSNNTEPTWFPDSQN  300 (429)
T ss_pred             cCCCCCcCceEECCCCCE
Confidence            222233444455555443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.25  E-value=3.8e-09  Score=82.66  Aligned_cols=112  Identities=10%  Similarity=0.123  Sum_probs=64.6

Q ss_pred             eEEcCCCCEEEEEeC-CCcEEEEeCCCC-C---eE--EecCcCceEEEEeCCCCEEEE-ecCCCeEEEEECCCceEEEee
Q psy8891           3 AKFLGDPTKVVSGSC-DRTLKIWDLRST-E---TK--FAGSSCNDLVTYDGAGTTIIS-GHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~-D~~v~lwdl~~~-~---~~--~~~~~~~~~~~~~~~~~~l~s-~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      +.|+|+++.|++++. ++.|.+||+... .   ..  ..+......+.++|+++.++. ...++.|.+||+.....+...
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            678999999988775 889999999642 1   11  111111223567889887754 456799999999763322110


Q ss_pred             eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CCeEEEEECC
Q psy8891          75 ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DKKVRFWDFR  126 (203)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~i~iWd~~  126 (203)
                      .. ..+   ...++        .....+.|+|+|++++++.. +++|.+||+.
T Consensus       165 ~~-~~~---~~~~g--------~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        165 EP-AEV---TTVEG--------AGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CC-Cce---ecCCC--------CCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            00 000   00000        00112355666667766655 6777777775

>KOG1310|consensus

Probab=99.25  E-value=5.9e-11  Score=94.42  Aligned_cols=158  Identities=20%  Similarity=0.281  Sum_probs=93.8

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCc-eEEEEeC--CCCEEEEecCCCeEEEEECCCceEE---
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCN-DLVTYDG--AGTTIISGHFDKKVRFWDFRAEEKV---   71 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~-~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~~~---   71 (203)
                      +|..|+.||.+|+|||.|-.+.+||....+...   .++..+ -.+.|-|  +++.|+||..|..|+++|+...+.-   
T Consensus        54 N~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d  133 (758)
T KOG1310|consen   54 NCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD  133 (758)
T ss_pred             cceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc
Confidence            478899999999999999999999997544332   122222 1233434  4569999999999999999753211   


Q ss_pred             -------EeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEEeccceEEE
Q psy8891          72 -------RDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELHGKITS  142 (203)
Q Consensus        72 -------~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~-~~~~~~~~~~v~~  142 (203)
                             +.+.-| ..|..++..|++.                  +.+.+++.||+|+-+|+|... +......+.  ..
T Consensus       134 ~~~~~~~~~~~cht~rVKria~~p~~P------------------htfwsasEDGtirQyDiREph~c~p~~~~~~--~l  193 (758)
T KOG1310|consen  134 HGMEETTRCWSCHTDRVKRIATAPNGP------------------HTFWSASEDGTIRQYDIREPHVCNPDEDCPS--IL  193 (758)
T ss_pred             cCccchhhhhhhhhhhhhheecCCCCC------------------ceEEEecCCcceeeecccCCccCCccccccH--HH
Confidence                   000000 1233333333221                  589999999999999998532 111100000  00


Q ss_pred             EEecCCcEEEEeecCeeEEeeeEEEEEEc-CCCEEEEecCCCcEEEEeC
Q psy8891         143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVV-DDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~v~~wd~  190 (203)
                      +...+..            ....++..+| ++.+|+.|+.|-.+++||.
T Consensus       194 ~ny~~~l------------ielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  194 VNYNPQL------------IELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             HHhchhh------------heeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            0000000            0111223334 3568999999999999994

>KOG1063|consensus

Probab=99.25  E-value=2.8e-10  Score=92.57  Aligned_cols=157  Identities=15%  Similarity=0.235  Sum_probs=97.5

Q ss_pred             CceEEcCCCCEEEEEeCCCc-----EEEEeCCCCC--eEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE
Q psy8891           1 MCAKFLGDPTKVVSGSCDRT-----LKIWDLRSTE--TKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~-----v~lwdl~~~~--~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~   72 (203)
                      +|++.+|+++.++|+....+     |++|+..+-.  .... +.-...-+.|+||+++|+|.|.|+++.+|....... .
T Consensus       529 ~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-~  607 (764)
T KOG1063|consen  529 YALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-D  607 (764)
T ss_pred             EEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc-h
Confidence            47888999999999887554     8999987622  1122 222234578999999999999999999998743321 1


Q ss_pred             eeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC--ceEEEE---eccceEEEEEecC
Q psy8891          73 DIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE--EKVRDI---ELHGKITSLDLSK  147 (203)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~--~~~~~~---~~~~~v~~~~~~~  147 (203)
                      .++       ++..+...+++=      ...|+|++.+++|+|.|++|++|.....  ..+..+   .....++.+++.+
T Consensus       608 e~~-------fa~~k~HtRIIW------dcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  608 EFR-------FACLKAHTRIIW------DCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             hhh-------hccccccceEEE------EcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence            111       111111111110      0237888999999999999999988765  333221   1112233222211


Q ss_pred             CcEEEEeecCeeEEeeeEEEEEEc-CCCEEEEecCCCcEEEEeCC
Q psy8891         148 GKYYFVFAEGFKVQCDFTRAVFVV-DDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~v~~wd~~  191 (203)
                                          ...+ .+..++.|-+.|.|.+|...
T Consensus       675 --------------------~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  675 --------------------VDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             --------------------cccccccceEEEEecccEEEEEecc
Confidence                                0111 23467888899999999854

>KOG3881|consensus

Probab=99.25  E-value=1.1e-09  Score=83.77  Aligned_cols=173  Identities=16%  Similarity=0.236  Sum_probs=103.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCC------eEEecCcCceEEE-EeCCCCEEEEecCC--CeEEEEECCCceEEEeee----
Q psy8891           9 PTKVVSGSCDRTLKIWDLRSTE------TKFAGSSCNDLVT-YDGAGTTIISGHFD--KKVRFWDFRAEEKVRDIE----   75 (203)
Q Consensus         9 ~~~l~t~s~D~~v~lwdl~~~~------~~~~~~~~~~~~~-~~~~~~~l~s~~~D--~~i~vwd~~~~~~~~~~~----   75 (203)
                      +..|++|-.+|.+.+|..+.+-      ...........+. .+.++..+++||..  ..++|||+.+.+++..-.    
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn  194 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN  194 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence            4567888889999999987422      1222222222222 23456688889999  899999999886654321    


Q ss_pred             ----eCCe--EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEeccc-eEEEEEe-c
Q psy8891          76 ----LHGK--ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDIELHG-KITSLDL-S  146 (203)
Q Consensus        76 ----~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~~~~~~~~~~-~v~~~~~-~  146 (203)
                          ...+  ++++.|-++.                 ....+++++.-+.+|+||.+.+ +|+..+.+.. .+.++.. .
T Consensus       195 D~L~LrVPvW~tdi~Fl~g~-----------------~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p  257 (412)
T KOG3881|consen  195 DRLGLRVPVWITDIRFLEGS-----------------PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP  257 (412)
T ss_pred             ccccceeeeeeccceecCCC-----------------CCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence                0111  2222222211                 1468899999999999998754 4555554332 2333221 2


Q ss_pred             CCcEEEEe-----------ecCe-------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         147 KGKYYFVF-----------AEGF-------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       147 ~~~~~~~~-----------~~~~-------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                      ...++++.           ..+.       .+...+..+..+|...++++|+.|+.|||+|..+.+++..
T Consensus       258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  258 SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            22222211           1111       1122345566778888999999999999999998777653

>KOG4328|consensus

Probab=99.25  E-value=2.3e-10  Score=89.08  Aligned_cols=161  Identities=18%  Similarity=0.302  Sum_probs=103.9

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE----ecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEE-----E
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKF----AGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKV-----R   72 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~----~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~-----~   72 (203)
                      +.|+.+...++.|..=|...+||+++.....    .+..-...+.+.| .+.+++|||.|+++||||+|.-..-     .
T Consensus       285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls  364 (498)
T KOG4328|consen  285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS  364 (498)
T ss_pred             ccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee
Confidence            3456677777777777799999998754321    1111223345555 5669999999999999999864322     1


Q ss_pred             eeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC----CCceEEEEeccceEEEEEecCC
Q psy8891          73 DIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR----AEEKVRDIELHGKITSLDLSKG  148 (203)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~----~~~~~~~~~~~~~v~~~~~~~~  148 (203)
                      ++.+.-.|                   ..+.|+|.+..|++.+.|..||+||..    ..++..++.....-       +
T Consensus       365 t~~HrrsV-------------------~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t-------~  418 (498)
T KOG4328|consen  365 TLPHRRSV-------------------NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT-------G  418 (498)
T ss_pred             ccccccee-------------------eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc-------c
Confidence            12111122                   235688887789999999999999973    22232222211100       0


Q ss_pred             cEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         149 KYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +          . -...++.+.|+..+++.|-.-..|-++|.+.++.+..+.
T Consensus       419 R----------w-lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~  459 (498)
T KOG4328|consen  419 R----------W-LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH  459 (498)
T ss_pred             c----------c-ccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc
Confidence            0          0 011246677888899999998889999999988766653

>KOG0650|consensus

Probab=99.24  E-value=2e-09  Score=86.60  Aligned_cols=162  Identities=18%  Similarity=0.256  Sum_probs=107.1

Q ss_pred             eEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCce-EEE-ecCCce-----------------
Q psy8891          40 DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTET-KFA-GSSCND-----------------  100 (203)
Q Consensus        40 ~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~-~~~~~~-----------------  100 (203)
                      ..+...+.|+.|+||+.||++|||.+.++.+++++..++.|.+++|+|.... +++ +...+.                 
T Consensus       404 r~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~  483 (733)
T KOG0650|consen  404 RSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTK  483 (733)
T ss_pred             EEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchh
Confidence            3455678899999999999999999999999999999999999999986543 221 111000                 


Q ss_pred             ---------------E---------------------------EEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEe
Q psy8891         101 ---------------L---------------------------VTYDGAGTTIISGHFD---KKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus       101 ---------------~---------------------------~~~~~~~~~l~s~s~d---~~i~iWd~~~~~~~~~~~  135 (203)
                                     +                           +.|+..|.+|+++..+   ..|-|.++........|.
T Consensus       484 ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~  563 (733)
T KOG0650|consen  484 ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR  563 (733)
T ss_pred             hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh
Confidence                           0                           2344456677766553   356666665443332331


Q ss_pred             -ccceEEEEEecCCcEEEEeecCe--eE---------------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC-ceee
Q psy8891         136 -LHGKITSLDLSKGKYYFVFAEGF--KV---------------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT-EQVE  196 (203)
Q Consensus       136 -~~~~v~~~~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~-~~~~  196 (203)
                       -++.+..+.+++....++.+...  ++               ...+.....+|.|+-|+.|+.|+.+..+|+.- .++-
T Consensus       564 kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy  643 (733)
T KOG0650|consen  564 KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY  643 (733)
T ss_pred             hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence             23556677777765555443321  11               11334566788899999999999999999874 3455


Q ss_pred             eeecc
Q psy8891         197 AVLKD  201 (203)
Q Consensus       197 ~~~~~  201 (203)
                      ++++-
T Consensus       644 k~lr~  648 (733)
T KOG0650|consen  644 KTLRL  648 (733)
T ss_pred             HHhhh
Confidence            55543

>KOG4378|consensus

Probab=99.22  E-value=5e-10  Score=88.27  Aligned_cols=127  Identities=15%  Similarity=0.315  Sum_probs=89.9

Q ss_pred             eEEcCCCC-EEEEEeCCCcEEEEeCCCCCeEEe----cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           3 AKFLGDPT-KVVSGSCDRTLKIWDLRSTETKFA----GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         3 ~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~~~----~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      ++|+|..+ .|.++|.+|.|.+||+.....++.    +..+..-++++| +..+|+|-|.|+.|.+||.+.......+..
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y  249 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY  249 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee
Confidence            46777665 467899999999999987554322    112222355665 556899999999999999998887777776


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC-CceEEEEecc-ceEEEEEecCC
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELH-GKITSLDLSKG  148 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~~~~~~~~~-~~v~~~~~~~~  148 (203)
                      ..+...++|                   .++|.+|+.|...|+|..||+|. ..++..+..+ ..|+++++-+.
T Consensus       250 ~~Plstvaf-------------------~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  250 SHPLSTVAF-------------------SECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             cCCcceeee-------------------cCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            666665555                   45677899999999999999985 3455555444 23666665443

>KOG1963|consensus

Probab=99.22  E-value=8.8e-09  Score=85.86  Aligned_cols=133  Identities=14%  Similarity=0.249  Sum_probs=99.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCC-------CCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRS-------TETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~-------~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      |+++||++..+++|..||.|.+|.=-.       ..+..-++.....+.|+++|.+|+|||+.+-+-+|.+.++++..--
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP  289 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP  289 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccc
Confidence            789999999999999999999995322       1223334445566789999999999999999999999998854333


Q ss_pred             eeCCeEEEEEecCCCceEEEecCCceE----------------------------------EEEcCCCCEEEEeeCCCeE
Q psy8891          75 ELHGKITSLDLSKGTETKFAGSSCNDL----------------------------------VTYDGAGTTIISGHFDKKV  120 (203)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~l~s~s~d~~i  120 (203)
                      +..++|..+.++|+++........+.+                                  .+.+|--+.++-.+..++|
T Consensus       290 RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~v  369 (792)
T KOG1963|consen  290 RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHV  369 (792)
T ss_pred             ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceE
Confidence            556788999999888765543333322                                  3455645667778889999


Q ss_pred             EEEECCCCceEEEE
Q psy8891         121 RFWDFRAEEKVRDI  134 (203)
Q Consensus       121 ~iWd~~~~~~~~~~  134 (203)
                      ++||+-+.+.+.++
T Consensus       370 Q~ydl~td~~i~~~  383 (792)
T KOG1963|consen  370 QFYDLYTDSTIYKL  383 (792)
T ss_pred             EEEeccccceeeeE
Confidence            99999887766544

>KOG0322|consensus

Probab=99.21  E-value=1.2e-10  Score=85.07  Aligned_cols=119  Identities=18%  Similarity=0.389  Sum_probs=83.8

Q ss_pred             EEEEecCCCeEEEEECCCceEEEeee-----------eCCeEEEEEecCCCceEEEecCCc-------------------
Q psy8891          50 TIISGHFDKKVRFWDFRAEEKVRDIE-----------LHGKITSLDLSKGTETKFAGSSCN-------------------   99 (203)
Q Consensus        50 ~l~s~~~D~~i~vwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~~-------------------   99 (203)
                      .|+.|-.+|.+-+||+.++..+-.+.           ..++|.++++.+-.++=+.++.+-                   
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence            46677789999999999875443332           236688888765322211111110                   


Q ss_pred             --------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEc
Q psy8891         100 --------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVV  171 (203)
Q Consensus       100 --------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (203)
                              .-+..-||+++++|++||+.||+++.++.+++-.+..|..                       .+..++|+|
T Consensus       247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----------------------gvn~vAfsp  303 (323)
T KOG0322|consen  247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----------------------GVNAVAFSP  303 (323)
T ss_pred             EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-----------------------ceeEEEeCC
Confidence                    0134568999999999999999999999988777665531                       223456778


Q ss_pred             CCCEEEEecCCCcEEEEeCC
Q psy8891         172 DDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       172 ~~~~l~s~s~d~~v~~wd~~  191 (203)
                      +...++.+|.|+.|-+|++.
T Consensus       304 d~~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  304 DCELMAAASKDARISLWKLY  323 (323)
T ss_pred             CCchhhhccCCceEEeeecC
Confidence            88899999999999999963

>KOG1063|consensus

Probab=99.20  E-value=3.6e-10  Score=91.96  Aligned_cols=110  Identities=16%  Similarity=0.291  Sum_probs=76.9

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCe---EEe-cCcCceE---EEEeCCCCEEEEecCCCeEEEEECCCc--eEE--
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTET---KFA-GSSCNDL---VTYDGAGTTIISGHFDKKVRFWDFRAE--EKV--   71 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---~~~-~~~~~~~---~~~~~~~~~l~s~~~D~~i~vwd~~~~--~~~--   71 (203)
                      ++|||||++|++.|.|+++.+|.......   .+. ...+..+   +.|+|++.+++|+|.|++++||.....  +.+  
T Consensus       578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~  657 (764)
T KOG1063|consen  578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR  657 (764)
T ss_pred             EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence            58999999999999999999998854221   111 1122233   357899999999999999999998776  332  


Q ss_pred             -EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          72 -RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        72 -~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                       ..+....+|+.+++.+-..              ...+..++.|-..|.|.+|...
T Consensus       658 ~a~~~~~~aVTAv~~~~~~~--------------~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  658 FACLKFSLAVTAVAYLPVDH--------------NEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             hchhccCCceeeEEeecccc--------------ccccceEEEEecccEEEEEecc
Confidence             2233456677777765110              0123467888889999999854

>KOG1587|consensus

Probab=99.20  E-value=1.2e-09  Score=89.58  Aligned_cols=171  Identities=20%  Similarity=0.218  Sum_probs=102.2

Q ss_pred             CceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeE-------EecC--cCceEEEEeCC--CCEEEEecCCCeEEEEECCCc
Q psy8891           1 MCAKFLG-DPTKVVSGSCDRTLKIWDLRSTETK-------FAGS--SCNDLVTYDGA--GTTIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         1 ~~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~-------~~~~--~~~~~~~~~~~--~~~l~s~~~D~~i~vwd~~~~   68 (203)
                      .|+.|+| +...++.|..+|.|-+||++.....       ..+.  .....+.|.++  +..++|+|.||.|+.|+++.-
T Consensus       246 ~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l  325 (555)
T KOG1587|consen  246 TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDML  325 (555)
T ss_pred             eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecccc
Confidence            3678888 5567888999999999999864321       1111  11223445433  346999999999999998643


Q ss_pred             eEE---Ee----------eeeCCeEEEEEecCCCce-EEEecCC-------------------------------ceEEE
Q psy8891          69 EKV---RD----------IELHGKITSLDLSKGTET-KFAGSSC-------------------------------NDLVT  103 (203)
Q Consensus        69 ~~~---~~----------~~~~~~v~~~~~~~~~~~-~~~~~~~-------------------------------~~~~~  103 (203)
                      ...   ..          ......+++++|.+.... ++.|..-                               ...+.
T Consensus       326 ~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~  405 (555)
T KOG1587|consen  326 SLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS  405 (555)
T ss_pred             ccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeee
Confidence            221   00          011234677777664332 2222211                               12244


Q ss_pred             EcCCCCEEEEeeCCCeEEEEECC-CCceEEEEeccc-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC
Q psy8891         104 YDGAGTTIISGHFDKKVRFWDFR-AEEKVRDIELHG-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI  181 (203)
Q Consensus       104 ~~~~~~~l~s~s~d~~i~iWd~~-~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  181 (203)
                      ++|-+..++..+.|-+|+||... ...++..+..+. .+.++.+++.+                       ...|+++..
T Consensus       406 ~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr-----------------------pavF~~~d~  462 (555)
T KOG1587|consen  406 RNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR-----------------------PAVFATVDG  462 (555)
T ss_pred             cCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-----------------------ceEEEEEcC
Confidence            55666554444448999999876 444443333322 25555555422                       347889999


Q ss_pred             CCcEEEEeCCCce
Q psy8891         182 DGNIYVWDCNTEQ  194 (203)
Q Consensus       182 d~~v~~wd~~~~~  194 (203)
                      ||++.+||+....
T Consensus       463 ~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  463 DGNLDIWDLLQDD  475 (555)
T ss_pred             CCceehhhhhccc
Confidence            9999999986543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.19  E-value=1.2e-08  Score=80.43  Aligned_cols=159  Identities=28%  Similarity=0.522  Sum_probs=105.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC-eE--Eec-Cc-CceEEEE-eCCCC-EEEEecC-CCeEEEEECCC-ceEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE-TK--FAG-SS-CNDLVTY-DGAGT-TIISGHF-DKKVRFWDFRA-EEKVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~-~~--~~~-~~-~~~~~~~-~~~~~-~l~s~~~-D~~i~vwd~~~-~~~~~   72 (203)
                      ++.|.+.+..+++++.|+.+++|+..... ..  ... .. ....... .+++. .++..+. |+.+++||+.. .....
T Consensus        70 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  149 (466)
T COG2319          70 SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIR  149 (466)
T ss_pred             EEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEE
Confidence            46778899999999999999999998764 21  112 11 1122223 56666 5555455 99999999987 55555


Q ss_pred             eeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CCeEEEEECCCCceEEEEeccceEEEEEecCCcE
Q psy8891          73 DIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKY  150 (203)
Q Consensus        73 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~  150 (203)
                      .+..| ..+..+.                   |+|++..+++++. |+.+++|++..+..+..+..+..           
T Consensus       150 ~~~~~~~~v~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  199 (466)
T COG2319         150 TLEGHSESVTSLA-------------------FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD-----------  199 (466)
T ss_pred             EEecCcccEEEEE-------------------ECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC-----------
Confidence            55444 3454444                   4455667777775 99999999998666555543211           


Q ss_pred             EEEeecCeeEEeeeEEEEEEcCCC-EEEEecCCCcEEEEeCCCceeee-eeccC
Q psy8891         151 YFVFAEGFKVQCDFTRAVFVVDDD-YVAVGSIDGNIYVWDCNTEQVEA-VLKDM  202 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~v~~wd~~~~~~~~-~~~~~  202 (203)
                                  .+....+.|++. .+++++.|+.+++||...++.+. .+.+|
T Consensus       200 ------------~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         200 ------------PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             ------------ceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence                        122344456766 55666999999999998888887 56554

>KOG0290|consensus

Probab=99.16  E-value=1.1e-09  Score=81.13  Aligned_cols=144  Identities=22%  Similarity=0.278  Sum_probs=92.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCC-----e-EEecCcCceEEEEeCC-CCEEEEecCCCeEEEEECCCceEEEee-ee---
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTE-----T-KFAGSSCNDLVTYDGA-GTTIISGHFDKKVRFWDFRAEEKVRDI-EL---   76 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~-----~-~~~~~~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~~~~~~~~~-~~---   76 (203)
                      |..++.|+|-|-|..+||++++.     + +..+...+--++|... -+.++|.|.||.+|+||+|.-+.-..+ +.   
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~  241 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP  241 (364)
T ss_pred             CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence            66789999999999999998752     1 1222222222455543 358999999999999999987653222 11   


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC-CeEEEEECCCCc-eEEEEecc-ceEEEEEecCCcEEEE
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD-KKVRFWDFRAEE-KVRDIELH-GKITSLDLSKGKYYFV  153 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-~~i~iWd~~~~~-~~~~~~~~-~~v~~~~~~~~~~~~~  153 (203)
                      +.+...+++++.                  |-+++|+-..| .+|.|-|+|... ++..++-| ..|+.+.+.+.     
T Consensus       242 ~~pLlRLswnkq------------------DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh-----  298 (364)
T KOG0290|consen  242 STPLLRLSWNKQ------------------DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH-----  298 (364)
T ss_pred             CCcceeeccCcC------------------CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC-----
Confidence            233444444442                  22355555554 489999998643 33344333 33555554431     


Q ss_pred             eecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         154 FAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                                        ....+.||+.|..+-+||+.+
T Consensus       299 ------------------S~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  299 ------------------SSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ------------------CCceeeecCCcceEEEEeccc
Confidence                              245789999999999999874

>KOG1272|consensus

Probab=99.15  E-value=1.3e-10  Score=90.59  Aligned_cols=173  Identities=16%  Similarity=0.205  Sum_probs=106.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcC--ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSC--NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK   79 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~   79 (203)
                      -+.++.+|..++-|+.-|.|-.+|+.+....+....-  ..-+.|-.+.++++ ...-+.+.||| ..|..++.+..+..
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~A-VAQK~y~yvYD-~~GtElHClk~~~~  211 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFA-VAQKKYVYVYD-NNGTELHCLKRHIR  211 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHH-hhhhceEEEec-CCCcEEeehhhcCc
Confidence            3567889999999999999999999886654332111  11123333333333 34556677776 34555666666666


Q ss_pred             EEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891          80 ITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      |..++|-|..=.+.+++..+.                       +..-.|-..++-.|...|+|.+|...+.+++-.+..
T Consensus       212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc  291 (545)
T KOG1272|consen  212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC  291 (545)
T ss_pred             hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh
Confidence            666666664433322222111                       112233344677777788888888777666544333


Q ss_pred             c-ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         137 H-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       137 ~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      | +.|.+                        +++.++|.|.+|++.|+.++|||++...-+.++.
T Consensus       292 H~g~V~s------------------------iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  292 HRGPVSS------------------------IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             cCCCcce------------------------EEECCCCcEEeecccccceeEeeeccccccceee
Confidence            2 33444                        4445688999999999999999998766555554

>KOG4227|consensus

Probab=99.15  E-value=1.5e-09  Score=83.54  Aligned_cols=151  Identities=19%  Similarity=0.217  Sum_probs=103.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCC------CCeE-EecCcC-ce--EEEEeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRS------TETK-FAGSSC-ND--LVTYDGAGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~------~~~~-~~~~~~-~~--~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      ++-|+.++++|++|+.|..+++|++..      ++.+ ....++ ..  .+.|...+..|+||+.++++-..|+.+.+.+
T Consensus        61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi  140 (609)
T KOG4227|consen   61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI  140 (609)
T ss_pred             eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee
Confidence            567899999999999999999999853      2221 222222 23  3456666779999999999999999988876


Q ss_pred             EeeeeC---CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEEeccceEEEEEecC
Q psy8891          72 RDIELH---GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELHGKITSLDLSK  147 (203)
Q Consensus        72 ~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~-~~~~~~~~~~v~~~~~~~  147 (203)
                      -.....   +.|+.++.+|                   ..+++++.+.++.|.+||.+..+ ++.-+       ..+-.+
T Consensus       141 ~V~~~~~~~~~VY~m~~~P-------------------~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-------~~AN~~  194 (609)
T KOG4227|consen  141 YVANENNNRGDVYHMDQHP-------------------TDNTLIVVTRAKLVSFIDNRDRQNPISLV-------LPANSG  194 (609)
T ss_pred             eeecccCcccceeecccCC-------------------CCceEEEEecCceEEEEeccCCCCCCcee-------eecCCC
Confidence            554432   4566666554                   34689999999999999998643 22111       111111


Q ss_pred             CcEEEEeecCeeEEeeeEEEEEEcC-CCEEEEecCCCcEEEEeCCC
Q psy8891         148 GKYYFVFAEGFKVQCDFTRAVFVVD-DDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~v~~wd~~~  192 (203)
                      .              .+..+.|.|. +.+|++.++-+.+.+||.+.
T Consensus       195 ~--------------~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  195 K--------------NFYTAEFHPETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             c--------------cceeeeecCCCceeEEeccccCCCCceeecc
Confidence            1              1223445553 56788999999999999763

>KOG0322|consensus

Probab=99.15  E-value=1.7e-10  Score=84.17  Aligned_cols=103  Identities=14%  Similarity=0.359  Sum_probs=76.1

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCC--Ce------EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRST--ET------KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~--~~------~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      +.|.+.-..=++|+.+..+-.|.+...  ..      ....+. ..-+.+-||++.++|+|||+.||||..++..++..+
T Consensus       211 ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpG-v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL  289 (323)
T KOG0322|consen  211 LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG-VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL  289 (323)
T ss_pred             eeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCC-ccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence            344333334467888999999988642  21      122222 233677899999999999999999999999988888


Q ss_pred             eeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891          75 ELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        75 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~  125 (203)
                      ..| +.|.+++|+|+                   ...++++|.|.+|.+|++
T Consensus       290 kyHsagvn~vAfspd-------------------~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  290 KYHSAGVNAVAFSPD-------------------CELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhcceeEEEeCCC-------------------CchhhhccCCceEEeeec
Confidence            776 45777776664                   458999999999999985

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.15  E-value=3e-08  Score=77.62  Aligned_cols=176  Identities=10%  Similarity=0.082  Sum_probs=100.0

Q ss_pred             ceEEcCCCCEEEEEe-CCCcEEEEeCCC-CCeEE----ecCcCceEEEEeCCCCEEEEecC-CCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPTKVVSGS-CDRTLKIWDLRS-TETKF----AGSSCNDLVTYDGAGTTIISGHF-DKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s-~D~~v~lwdl~~-~~~~~----~~~~~~~~~~~~~~~~~l~s~~~-D~~i~vwd~~~~~~~~~~   74 (203)
                      .++++|+++.|+.++ .++.|.+|++.. +....    .......-+.++|+++.|++++. ++.|.+||+.....+...
T Consensus        39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~  118 (330)
T PRK11028         39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP  118 (330)
T ss_pred             cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence            467899999987764 589999999963 32211    11112234678899998888764 889999998643211100


Q ss_pred             eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCCCceEE-------EEeccceEEEEEec
Q psy8891          75 ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEKVR-------DIELHGKITSLDLS  146 (203)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~~~~~~-------~~~~~~~v~~~~~~  146 (203)
                           +..+   +.       ......+.++|+|+++++++ .+++|.+||+.+...+.       ..........+.++
T Consensus       119 -----~~~~---~~-------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~  183 (330)
T PRK11028        119 -----IQII---EG-------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH  183 (330)
T ss_pred             -----eeec---cC-------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence                 0000   00       00011234678888886555 56899999997632221       11112234445555


Q ss_pred             CCc-EEEEeecC---------------eeEEee-------------eEEEEEEcCCCEEEEecC-CCcEEEEeCCC
Q psy8891         147 KGK-YYFVFAEG---------------FKVQCD-------------FTRAVFVVDDDYVAVGSI-DGNIYVWDCNT  192 (203)
Q Consensus       147 ~~~-~~~~~~~~---------------~~~~~~-------------~~~~~~~~~~~~l~s~s~-d~~v~~wd~~~  192 (203)
                      ++. ++++..+.               +.....             ...+.++|++++++++.. ++.|.+|++++
T Consensus       184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            543 22222110               000000             012557899999888854 78999999854

>KOG1517|consensus

Probab=99.14  E-value=1.8e-09  Score=91.81  Aligned_cols=160  Identities=19%  Similarity=0.323  Sum_probs=102.0

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecC-----cCceEEEE-eCCCCEEEEecCCCeEEEEECCCce-EEEe
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGS-----SCNDLVTY-DGAGTTIISGHFDKKVRFWDFRAEE-KVRD   73 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~-----~~~~~~~~-~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~   73 (203)
                      +.|+|=...++++..-..|++||.+.++...  ...     ....+.-+ ..|..+|++|+.||.||||+-.... ....
T Consensus      1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE 1149 (1387)
T ss_pred             eeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCce
Confidence            5678888889999888999999998766532  111     11112222 2356699999999999999843321 1001


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce--EEEEEecCCcEE
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK--ITSLDLSKGKYY  151 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~--v~~~~~~~~~~~  151 (203)
                      +     |+  ++.+-.+.+.+....+.+..|......|+++|.-+.|||||.....+...+.....  +++++.      
T Consensus      1150 L-----VT--aw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~------ 1216 (1387)
T KOG1517|consen 1150 L-----VT--AWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA------ 1216 (1387)
T ss_pred             e-----EE--eeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc------
Confidence            1     11  12221222333334456677887777788888789999999987776666554321  222211      


Q ss_pred             EEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         152 FVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                                       ..+.|..++.|..||.||+||.+.
T Consensus      1217 -----------------~~~~gn~i~AGfaDGsvRvyD~R~ 1240 (1387)
T KOG1517|consen 1217 -----------------DLVHGNIIAAGFADGSVRVYDRRM 1240 (1387)
T ss_pred             -----------------cccCCceEEEeecCCceEEeeccc
Confidence                             113478999999999999999764

>KOG2394|consensus

Probab=99.13  E-value=8e-10  Score=87.76  Aligned_cols=86  Identities=21%  Similarity=0.208  Sum_probs=66.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      .-+|+|||++||+.|.||.+||+|..+.+...  + .-..--.++|+||+++|++||.|--|-||.+...+.+..-..| 
T Consensus       295 ~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHk  374 (636)
T KOG2394|consen  295 EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHK  374 (636)
T ss_pred             ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccc
Confidence            35799999999999999999999998754321  1 0111234789999999999999999999999888776554444 


Q ss_pred             CeEEEEEecC
Q psy8891          78 GKITSLDLSK   87 (203)
Q Consensus        78 ~~v~~~~~~~   87 (203)
                      ..|..++|.|
T Consensus       375 SWVs~VaFDp  384 (636)
T KOG2394|consen  375 SWVSVVAFDP  384 (636)
T ss_pred             cceeeEeecc
Confidence            4577888875

>KOG2110|consensus

Probab=99.12  E-value=4.2e-08  Score=74.83  Aligned_cols=153  Identities=10%  Similarity=0.128  Sum_probs=98.5

Q ss_pred             cEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC----CeEEEEEecCCCceEE--
Q psy8891          20 TLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH----GKITSLDLSKGTETKF--   93 (203)
Q Consensus        20 ~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~--   93 (203)
                      .+|+.+.+....+....-+..+++.-=+-+.|+.+=.+. |.|||+++.+.++++...    ..+.++.++.....+.  
T Consensus        69 ~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp  147 (391)
T KOG2110|consen   69 KLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP  147 (391)
T ss_pred             eEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEec
Confidence            477777765443322211122332222334666665554 999999999998887543    1244444443322222  


Q ss_pred             -----------------------EecCCceEEEEcCCCCEEEEeeCCCe-EEEEECCCCceEEEEeccceEEEEEecCCc
Q psy8891          94 -----------------------AGSSCNDLVTYDGAGTTIISGHFDKK-VRFWDFRAEEKVRDIELHGKITSLDLSKGK  149 (203)
Q Consensus        94 -----------------------~~~~~~~~~~~~~~~~~l~s~s~d~~-i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~  149 (203)
                                             ++.....++.|+++|..|||+|..|+ ||++.+.+|+.+.+|+-...          
T Consensus       148 ~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~----------  217 (391)
T KOG2110|consen  148 GSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY----------  217 (391)
T ss_pred             CCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce----------
Confidence                                   11222235689999999999999885 68999999988777653211          


Q ss_pred             EEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         150 YYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                                 .+.+..++|+|+.++|++.|.-++|++|.+++..
T Consensus       218 -----------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  218 -----------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             -----------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence                       2234567788999999999999999999987543

>KOG1538|consensus

Probab=99.10  E-value=9.4e-09  Score=83.99  Aligned_cols=166  Identities=20%  Similarity=0.271  Sum_probs=100.3

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCC-CCeEEec---------------------------------------CcCce
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRS-TETKFAG---------------------------------------SSCND   40 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~-~~~~~~~---------------------------------------~~~~~   40 (203)
                      +||+|+.||++++||+.|..|.+|.-.. +..+..+                                       .....
T Consensus        57 ycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~  136 (1081)
T KOG1538|consen   57 YCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRII  136 (1081)
T ss_pred             EEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEE
Confidence            5899999999999999999999998542 1100000                                       00011


Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee---eCCeEEEEEecCCCce-----EEE---------ecC------
Q psy8891          41 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE---LHGKITSLDLSKGTET-----KFA---------GSS------   97 (203)
Q Consensus        41 ~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~-----~~~---------~~~------   97 (203)
                      .+.|..||++++-|-.||+|-|-+-..++..+.-+   ..++|.+++++|....     +..         ...      
T Consensus       137 ~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig  216 (1081)
T KOG1538|consen  137 CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG  216 (1081)
T ss_pred             EeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeec
Confidence            24577789999999999999998765544443333   2256888888874320     000         000      


Q ss_pred             -------CceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-eccceEEEEEecCCcEEEEeecCeeEEeeeEEEEE
Q psy8891          98 -------CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-ELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVF  169 (203)
Q Consensus        98 -------~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (203)
                             ...++.|-++|.+++.|+.|+.++++--. |-.+.++ ++.                        ..+..+..
T Consensus       217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D------------------------~WIWtV~~  271 (1081)
T KOG1538|consen  217 KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQD------------------------SWIWTVQA  271 (1081)
T ss_pred             ccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccc------------------------eeEEEEEE
Confidence                   01123344556666666666666655321 2111111 111                        12344556


Q ss_pred             EcCCCEEEEecCCCcEEEEeCC
Q psy8891         170 VVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       170 ~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      .|++++++.|+.||++-.|++-
T Consensus       272 ~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  272 KPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ccCCceEEEEEccCeeehhhhH
Confidence            6899999999999999999865

>KOG1240|consensus

Probab=99.09  E-value=4.9e-09  Score=90.35  Aligned_cols=155  Identities=22%  Similarity=0.292  Sum_probs=98.3

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCC--C-----eEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc--eEEEe
Q psy8891           6 LGDPTKVVSGSCDRTLKIWDLRST--E-----TKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE--EKVRD   73 (203)
Q Consensus         6 ~~~~~~l~t~s~D~~v~lwdl~~~--~-----~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~--~~~~~   73 (203)
                      ++++..++|||.||+||+||++.-  .     +..  . .......+..-+.++.+|.++.||.|++.++...  +....
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence            455589999999999999998741  1     111  1 1222344555567889999999999999998763  21110


Q ss_pred             e-------eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe---ccceEEEE
Q psy8891          74 I-------ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE---LHGKITSL  143 (203)
Q Consensus        74 ~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~---~~~~v~~~  143 (203)
                      .       ...+.+..+.--                .....+..|+.+..-+.|..||+++.......+   -++-|+++
T Consensus      1138 ~~~ri~n~~~~g~vv~m~a~----------------~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAF----------------TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             eeeecccccCCCceEEeecc----------------cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            0       111222221100                000112367777778899999998765543332   23444443


Q ss_pred             EecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         144 DLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .                        .+|.+.++++|..-|.+.+||++=+.++..++
T Consensus      1202 ~------------------------idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1202 V------------------------IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred             E------------------------ecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence            3                        44567799999999999999999777777654

>KOG2110|consensus

Probab=99.05  E-value=6.2e-08  Score=73.94  Aligned_cols=106  Identities=11%  Similarity=0.171  Sum_probs=76.1

Q ss_pred             eEEcCCCC--EEEE-Ee-CCCcEEEEeCCCCCe---EEecCcCceEEEEeCCCCEEEEecCCCe-EEEEECCCceEEEee
Q psy8891           3 AKFLGDPT--KVVS-GS-CDRTLKIWDLRSTET---KFAGSSCNDLVTYDGAGTTIISGHFDKK-VRFWDFRAEEKVRDI   74 (203)
Q Consensus         3 ~~~~~~~~--~l~t-~s-~D~~v~lwdl~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~D~~-i~vwd~~~~~~~~~~   74 (203)
                      ++++++..  +|+- +| .-|.|.+||+.+-+.   +..+......++++++|.+|||+|.-|+ |||+.+.+++.+.++
T Consensus       133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF  212 (391)
T KOG2110|consen  133 CALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF  212 (391)
T ss_pred             EeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence            45555443  6654 22 258899999987443   2333344566789999999999999995 689999999888777


Q ss_pred             eeC---CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          75 ELH---GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        75 ~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      +-.   ..|.++                   +|+|++++|++.|..++|+++.+..
T Consensus       213 RRG~~~~~IySL-------------------~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  213 RRGTYPVSIYSL-------------------SFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eCCceeeEEEEE-------------------EECCCCCeEEEecCCCeEEEEEecc
Confidence            521   234444                   4566777899999999999998864

>KOG1334|consensus

Probab=99.05  E-value=3.3e-09  Score=83.44  Aligned_cols=110  Identities=22%  Similarity=0.311  Sum_probs=72.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEE--EEeC--CCCEEEEecCCCeEEEEECCC-ceEE--E
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLV--TYDG--AGTTIISGHFDKKVRFWDFRA-EEKV--R   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~--~~~~--~~~~l~s~~~D~~i~vwd~~~-~~~~--~   72 (203)
                      .|.|...|..|+|||.|..|.+||+.....+  +...+++.+.  .|-|  +...+++++.||.+|+=.+-. +.+.  .
T Consensus       147 tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~  226 (559)
T KOG1334|consen  147 TVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK  226 (559)
T ss_pred             eeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecce
Confidence            5789999999999999999999999876543  3333333321  1323  446899999999999877643 2222  2


Q ss_pred             e-eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891          73 D-IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        73 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                      . -..+++|..++..|+...                  .++|++.|+.+.-.|++++.
T Consensus       227 rl~~h~g~vhklav~p~sp~------------------~f~S~geD~~v~~~Dlr~~~  266 (559)
T KOG1334|consen  227 RLAPHEGPVHKLAVEPDSPK------------------PFLSCGEDAVVFHIDLRQDV  266 (559)
T ss_pred             ecccccCccceeeecCCCCC------------------cccccccccceeeeeeccCC
Confidence            2 234577888887776542                  45556666666655655443

>KOG0290|consensus

Probab=99.04  E-value=4.9e-09  Score=77.73  Aligned_cols=127  Identities=19%  Similarity=0.298  Sum_probs=86.2

Q ss_pred             ceEEcCCCC-EEEEEeCCCcEEEEeCCCCCe---EEecCc-CceEEEE--e-CCCCEEEEecCCC-eEEEEECCCce-EE
Q psy8891           2 CAKFLGDPT-KVVSGSCDRTLKIWDLRSTET---KFAGSS-CNDLVTY--D-GAGTTIISGHFDK-KVRFWDFRAEE-KV   71 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~---~~~~~~-~~~~~~~--~-~~~~~l~s~~~D~-~i~vwd~~~~~-~~   71 (203)
                      .++|...+. .++|.|+||+||++||+..+.   ...... ...++..  . .+.+++++-..|. .|-|-|+|.+. ++
T Consensus       201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv  280 (364)
T KOG0290|consen  201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV  280 (364)
T ss_pred             EEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence            478887664 789999999999999987442   233332 2334433  3 3567888887765 89999999765 45


Q ss_pred             EeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc------eEEEEeccceEEEEE
Q psy8891          72 RDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE------KVRDIELHGKITSLD  144 (203)
Q Consensus        72 ~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~------~~~~~~~~~~v~~~~  144 (203)
                      ..++.| +.|+.++++|...                  ..|+|++.|..+-+||+.+.-      ++......++|+.+.
T Consensus       281 a~L~~H~a~VNgIaWaPhS~------------------~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~  342 (364)
T KOG0290|consen  281 ARLRNHQASVNGIAWAPHSS------------------SHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQ  342 (364)
T ss_pred             ehhhcCcccccceEecCCCC------------------ceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeee
Confidence            556555 5688888887543                  589999999999999997421      122223345566555


Q ss_pred             ec
Q psy8891         145 LS  146 (203)
Q Consensus       145 ~~  146 (203)
                      ++
T Consensus       343 Ws  344 (364)
T KOG0290|consen  343 WS  344 (364)
T ss_pred             ec
Confidence            54

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.03  E-value=3.6e-07  Score=72.53  Aligned_cols=171  Identities=19%  Similarity=0.205  Sum_probs=106.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecC
Q psy8891          11 KVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK   87 (203)
Q Consensus        11 ~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~   87 (203)
                      .+++-..+++|.+.|..+.+...  . +......+.+++|+++++.++.|+.|.++|+.+.+.+.++........++++ 
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s-   86 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVS-   86 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEc-
Confidence            34677789999999998876432  2 2222223567899999999999999999999999988888765555665554 


Q ss_pred             CCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEeccc--------eEEEEEecCCcEEEE-e-ec
Q psy8891          88 GTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEKVRDIELHG--------KITSLDLSKGKYYFV-F-AE  156 (203)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~-~-~~  156 (203)
                                        +||++++.+. .++.+.++|.++.++++.+...+        ++..+-.++....++ . .+
T Consensus        87 ------------------~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd  148 (369)
T PF02239_consen   87 ------------------PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD  148 (369)
T ss_dssp             -------------------TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT
T ss_pred             ------------------CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc
Confidence                              4666776664 58899999999999988876432        344443333322221 1 11


Q ss_pred             -Cee----------EE-------eeeEEEEEEcCCCEEEEe-cCCCcEEEEeCCCceeeeeec
Q psy8891         157 -GFK----------VQ-------CDFTRAVFVVDDDYVAVG-SIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       157 -~~~----------~~-------~~~~~~~~~~~~~~l~s~-s~d~~v~~wd~~~~~~~~~~~  200 (203)
                       +..          ..       ...-...+.|++++|+.+ -.+..|-++|..+++.+..+.
T Consensus       149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence             100          00       011234578899987665 457789999999998887653

...

>KOG1523|consensus

Probab=99.02  E-value=4.9e-08  Score=73.30  Aligned_cols=186  Identities=12%  Similarity=0.167  Sum_probs=111.5

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE------EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE----
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK------FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK----   70 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~----   70 (203)
                      .|-+|++|.+.++.+-....|-||........      ..+......+.|.|..+.|++|+.|....||....+..    
T Consensus        14 tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkpt   93 (361)
T KOG1523|consen   14 TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPT   93 (361)
T ss_pred             eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccc
Confidence            37789999999999999999999988764421      11233355688999999999999999999999854421    


Q ss_pred             EEeeeeCCeEEEEEecCCCceEEEecCCceE---------------------------EEEcCCCCEEEEeeCCCeEEEE
Q psy8891          71 VRDIELHGKITSLDLSKGTETKFAGSSCNDL---------------------------VTYDGAGTTIISGHFDKKVRFW  123 (203)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~l~s~s~d~~i~iW  123 (203)
                      +--++.-...+++.++|....+.+|+....+                           ..|.|+.-.+++|+.|+++|++
T Consensus        94 lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVf  173 (361)
T KOG1523|consen   94 LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVF  173 (361)
T ss_pred             eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEE
Confidence            1222334556666666666665555443221                           2355555566666666666666


Q ss_pred             ECCCCceEEEEeccceEEEEEecCCcEEEE-eecCe-eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         124 DFRAEEKVRDIELHGKITSLDLSKGKYYFV-FAEGF-KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       124 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                      ..    -++.++.+......   ..+..|- ...+. .....+-...|+|.|..|+-.+.|.++.+=|....
T Consensus       174 Sa----yIK~Vdekpap~pW---gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  174 SA----YIKGVDEKPAPTPW---GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             EE----eeeccccCCCCCCC---ccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            42    11111111000000   0000000 00000 11112345678899999999999999999987654

>KOG2321|consensus

Probab=99.02  E-value=2.1e-08  Score=80.54  Aligned_cols=166  Identities=19%  Similarity=0.274  Sum_probs=102.7

Q ss_pred             ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeEEecCcCceEEEE------------------------------------
Q psy8891           2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETKFAGSSCNDLVTY------------------------------------   44 (203)
Q Consensus         2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~------------------------------------   44 (203)
                      .+..+|||+++ +||-.--.||+||+.....++.-+--...+.+                                    
T Consensus        56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~  135 (703)
T KOG2321|consen   56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKF  135 (703)
T ss_pred             eeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcC
Confidence            35679999975 67888999999998764433321111111111                                    


Q ss_pred             ------eCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC
Q psy8891          45 ------DGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD  117 (203)
Q Consensus        45 ------~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  117 (203)
                            +.-.--|+.++....|.=.+|.+|..+..+..+ +.++.+..++                   ....|+.|+.|
T Consensus       136 GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-------------------~hgLla~Gt~~  196 (703)
T KOG2321|consen  136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-------------------EHGLLACGTED  196 (703)
T ss_pred             CccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-------------------ccceEEecccC
Confidence                  100112445555555666666666655555443 3444444443                   44578888889


Q ss_pred             CeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       118 ~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      |.|..||.++......+.....|++....            .....++.+.|.-+|-.++.|..+|.|.|||+++.+++-
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~------------~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~  264 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNSHPGG------------DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL  264 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCCCccc------------cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence            99999999987766666554443322111            111134566676678889999999999999999887764


Q ss_pred             e
Q psy8891         198 V  198 (203)
Q Consensus       198 ~  198 (203)
                      +
T Consensus       265 ~  265 (703)
T KOG2321|consen  265 V  265 (703)
T ss_pred             e
Confidence            3

>KOG1272|consensus

Probab=99.00  E-value=1.3e-09  Score=85.16  Aligned_cols=125  Identities=22%  Similarity=0.351  Sum_probs=89.9

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee-eeCC
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-ELHG   78 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~-~~~~   78 (203)
                      ..|.|---.|+++|..|-++--|+.+++...   ......++....|-+..+-.|...|+|-+|.-...+++..+ .+.+
T Consensus       215 LeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g  294 (545)
T KOG1272|consen  215 LEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG  294 (545)
T ss_pred             hcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC
Confidence            3567777789999999999999998766421   12222344556677778999999999999998887765443 4457


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEec
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLS  146 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~  146 (203)
                      +|.++++.+                   +|++++|.+.|+.++|||+|....+++...+.....++++
T Consensus       295 ~V~siAv~~-------------------~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~S  343 (545)
T KOG1272|consen  295 PVSSIAVDR-------------------GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLS  343 (545)
T ss_pred             CcceEEECC-------------------CCcEEeecccccceeEeeeccccccceeecCCCccccccc
Confidence            787776654                   6779999999999999999987655555444344444443

>KOG4547|consensus

Probab=98.99  E-value=6.4e-08  Score=77.72  Aligned_cols=152  Identities=15%  Similarity=0.126  Sum_probs=105.1

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCeEEec-------CcCce-EEEE------------------eCCCCEEEEecCCCeE
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTETKFAG-------SSCND-LVTY------------------DGAGTTIISGHFDKKV   60 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-------~~~~~-~~~~------------------~~~~~~l~s~~~D~~i   60 (203)
                      |...++|....||.+|+||....+.....       ..+.. .+..                  +.+...++=|-..|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45578999999999999999875432111       11110 0111                  1233466667778899


Q ss_pred             EEEECCCceEEEeeeeC---CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891          61 RFWDFRAEEKVRDIELH---GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        61 ~vwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      -+|++..++....+...   +.|..                   +.+..+-.+|+|++.|+++-.|+....+.++.+...
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~-------------------~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~  143 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNE-------------------ILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ  143 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCccee-------------------eecccccCceEecCCceeEEEEecccceeeeeeccC
Confidence            99999888877666532   33333                   334445568999999999999999887766655433


Q ss_pred             ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         138 GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       138 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      .+                       .....+.+||++.+++++  +.|++||+++++++.++.||
T Consensus       144 ~~-----------------------~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh  183 (541)
T KOG4547|consen  144 KP-----------------------LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH  183 (541)
T ss_pred             CC-----------------------ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC
Confidence            21                       123455678999998876  78999999999999999987

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=8.8e-08  Score=77.80  Aligned_cols=152  Identities=17%  Similarity=0.167  Sum_probs=90.5

Q ss_pred             ceEEcCCCCEEEEEeCC---CcEEEEeCCCCCeEE-e-cCcCceEEEEeCCCCEEE-EecCCC--eEEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCD---RTLKIWDLRSTETKF-A-GSSCNDLVTYDGAGTTII-SGHFDK--KVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D---~~v~lwdl~~~~~~~-~-~~~~~~~~~~~~~~~~l~-s~~~D~--~i~vwd~~~~~~~~~   73 (203)
                      +.+|+|||+.|+..+.+   ..|.+||+.+++... . .........|+|+++.|+ +.+.++  .|.+||+.+++.. .
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~  286 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-R  286 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-E
Confidence            46899999999987743   469999998765432 1 122233467899998664 556655  5999999876542 2


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CCe--EEEEECCCCceEEEEeccceEEEEEecCCcE
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DKK--VRFWDFRAEEKVRDIELHGKITSLDLSKGKY  150 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~--i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~  150 (203)
                      +..+..+                  .....|+|+|+.|+..+. ++.  |.++|+.+++. +.+...+.           
T Consensus       287 lt~~~~~------------------~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~-----------  336 (433)
T PRK04922        287 LTNHFGI------------------DTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGN-----------  336 (433)
T ss_pred             CccCCCC------------------ccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCC-----------
Confidence            2211110                  011357888888777663 444  55566655442 22211110           


Q ss_pred             EEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC---cEEEEeCCCceee
Q psy8891         151 YFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG---NIYVWDCNTEQVE  196 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~v~~wd~~~~~~~  196 (203)
                                  ......++|++++++..+.++   .|.+||+.+++..
T Consensus       337 ------------~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        337 ------------YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ------------CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence                        001235678888877654433   5888998877655

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=1.6e-07  Score=76.26  Aligned_cols=110  Identities=11%  Similarity=0.137  Sum_probs=69.4

Q ss_pred             ceEEcCCCCEEEEEeC---CCcEEEEeCCCCCeEE-e-cCcCceEEEEeCCCCEE-EEecCCCe--EEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSC---DRTLKIWDLRSTETKF-A-GSSCNDLVTYDGAGTTI-ISGHFDKK--VRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~---D~~v~lwdl~~~~~~~-~-~~~~~~~~~~~~~~~~l-~s~~~D~~--i~vwd~~~~~~~~~   73 (203)
                      +.+|+|||++|+..+.   +..|.+||+.+++... . .........|+|+++.| ++.+.++.  |.+||+..++.. .
T Consensus       206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~  284 (435)
T PRK05137        206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-R  284 (435)
T ss_pred             eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-E
Confidence            5689999999988764   4689999998765422 1 12222345789999866 46666665  667788766542 2


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CC--eEEEEECCCCce
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DK--KVRFWDFRAEEK  130 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~--~i~iWd~~~~~~  130 (203)
                      +..+..+                  .....|+|||+.|+..+. ++  .|.++|+..++.
T Consensus       285 Lt~~~~~------------------~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~  326 (435)
T PRK05137        285 LTDSPAI------------------DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP  326 (435)
T ss_pred             ccCCCCc------------------cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence            2211110                  112357888888877663 32  677888766543

>KOG0974|consensus

Probab=98.98  E-value=2.4e-08  Score=84.74  Aligned_cols=154  Identities=19%  Similarity=0.241  Sum_probs=102.8

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCc-------eEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           5 FLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCN-------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         5 ~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~-------~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +.-+.++++.+..+..+-+||..........+...       .++..+++.=++++|+.-+.|-+|+.........+.+|
T Consensus        95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH  174 (967)
T KOG0974|consen   95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH  174 (967)
T ss_pred             hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc
Confidence            34567889999999999999987644332222211       12234455558999999999999998632222223333


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeec
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAE  156 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  156 (203)
                       +.+.++.                   |+-+|++++++|.|+++|+|++.+.+...                      ..
T Consensus       175 eG~iF~i~-------------------~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----------------------~~  213 (967)
T KOG0974|consen  175 EGSIFSIV-------------------TSLDGRYIASVSDDRSIRLWPIDSREVLG----------------------CT  213 (967)
T ss_pred             CCceEEEE-------------------EccCCcEEEEEecCcceeeeecccccccC----------------------cc
Confidence             4455443                   45578899999999999999998866432                      11


Q ss_pred             CeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         157 GFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      ++.+...+..+++.|.  .++|+++|-+.++|+.+ +..+.++++|
T Consensus       214 ~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h  256 (967)
T KOG0974|consen  214 GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEH  256 (967)
T ss_pred             cccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhh
Confidence            2233334556667665  99999999999999877 3444466554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=1.8e-07  Score=75.82  Aligned_cols=153  Identities=18%  Similarity=0.201  Sum_probs=90.8

Q ss_pred             ceEEcCCCCEEEEEeCC---CcEEEEeCCCCCeE-Ee-cCcCceEEEEeCCCCEEE-EecCCCeEEEEEC--CCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCD---RTLKIWDLRSTETK-FA-GSSCNDLVTYDGAGTTII-SGHFDKKVRFWDF--RAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D---~~v~lwdl~~~~~~-~~-~~~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~--~~~~~~~~   73 (203)
                      +.+|+|||++|+..+.+   ..|.+||+.+++.. .. .........|+|+++.|+ +.+.++...||.+  ..++ ...
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~  278 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRR  278 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEE
Confidence            56899999999887753   35999999876542 21 222233467899998775 6788887777754  3332 222


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CCeEEEEECC--CCceEEEEeccceEEEEEecCCcE
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DKKVRFWDFR--AEEKVRDIELHGKITSLDLSKGKY  150 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~i~iWd~~--~~~~~~~~~~~~~v~~~~~~~~~~  150 (203)
                      +..+..+                  .....|+|||+.|+..+. ++...+|.+.  +++. ..+...+.           
T Consensus       279 lt~~~~~------------------~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~-----------  328 (427)
T PRK02889        279 LTQSSGI------------------DTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGS-----------  328 (427)
T ss_pred             CCCCCCC------------------CcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCC-----------
Confidence            2211110                  011358888888776654 4566777553  3321 11111110           


Q ss_pred             EEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC---cEEEEeCCCceeee
Q psy8891         151 YFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG---NIYVWDCNTEQVEA  197 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~v~~wd~~~~~~~~  197 (203)
                                  ......++|+|++++..+.++   .|.+||+.+++...
T Consensus       329 ------------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~  366 (427)
T PRK02889        329 ------------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA  366 (427)
T ss_pred             ------------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence                        001234678888887766554   59999988777554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.94  E-value=2.5e-07  Score=74.64  Aligned_cols=151  Identities=17%  Similarity=0.176  Sum_probs=87.5

Q ss_pred             ceEEcCCCCEEEEEeCC---CcEEEEeCCCCCeEE-e-cCcCceEEEEeCCCCEEE-EecCCC--eEEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCD---RTLKIWDLRSTETKF-A-GSSCNDLVTYDGAGTTII-SGHFDK--KVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D---~~v~lwdl~~~~~~~-~-~~~~~~~~~~~~~~~~l~-s~~~D~--~i~vwd~~~~~~~~~   73 (203)
                      +.+|+|||++|+.++.+   ..|++||+.+++... . .........|+|+++.|+ +.+.++  .|.+||+.+++... 
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-  272 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-  272 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-
Confidence            45789999999887654   479999998765321 1 222223367899998665 555554  58888987764322 


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC-C--eEEEEECCCCceEEEEeccceEEEEEecCCcE
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD-K--KVRFWDFRAEEKVRDIELHGKITSLDLSKGKY  150 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-~--~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~  150 (203)
                      +..+..+                  .....|+|+|+.|+.++.. +  .|.++|+.+++.. .+.....           
T Consensus       273 l~~~~~~------------------~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~-----------  322 (417)
T TIGR02800       273 LTNGPGI------------------DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG-----------  322 (417)
T ss_pred             CCCCCCC------------------CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC-----------
Confidence            2111110                  0013477788877766543 3  5777787765432 2211110           


Q ss_pred             EEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC---cEEEEeCCCcee
Q psy8891         151 YFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG---NIYVWDCNTEQV  195 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~v~~wd~~~~~~  195 (203)
                                  ......++|++++++.++.++   .|.+||+.+++.
T Consensus       323 ------------~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       323 ------------YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             ------------CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence                        011233556777777766655   677777766543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1310|consensus

Probab=98.93  E-value=7.6e-09  Score=82.70  Aligned_cols=128  Identities=19%  Similarity=0.301  Sum_probs=85.0

Q ss_pred             ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-C-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEE
Q psy8891          34 AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-H-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTI  111 (203)
Q Consensus        34 ~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  111 (203)
                      .+..++..+.|..+|..|+|||+|-.+.|||.-.-+.++.+.. | +.|.++.|-|...                 .+++
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn-----------------nriv  110 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN-----------------NRIV  110 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC-----------------CeEE
Confidence            3455667788999999999999999999999887777776642 2 5688888877432                 3589


Q ss_pred             EEeeCCCeEEEEECCCCceEE-EEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCC-CEEEEecCCCcEEEEe
Q psy8891         112 ISGHFDKKVRFWDFRAEEKVR-DIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDD-DYVAVGSIDGNIYVWD  189 (203)
Q Consensus       112 ~s~s~d~~i~iWd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~v~~wd  189 (203)
                      +||+.|+.|+++|+.+-.-.. .-.+..+......+.+              .+-+++-.|++ ..|.++++||+++-+|
T Consensus       111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~--------------rVKria~~p~~PhtfwsasEDGtirQyD  176 (758)
T KOG1310|consen  111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD--------------RVKRIATAPNGPHTFWSASEDGTIRQYD  176 (758)
T ss_pred             EeccCcceEEEEecccccccccccCccchhhhhhhhhh--------------hhhheecCCCCCceEEEecCCcceeeec
Confidence            999999999999997421100 0000001111111100              11123334554 6899999999999999


Q ss_pred             CCC
Q psy8891         190 CNT  192 (203)
Q Consensus       190 ~~~  192 (203)
                      ++.
T Consensus       177 iRE  179 (758)
T KOG1310|consen  177 IRE  179 (758)
T ss_pred             ccC
Confidence            874

>KOG3881|consensus

Probab=98.92  E-value=2.5e-08  Score=76.56  Aligned_cols=126  Identities=17%  Similarity=0.257  Sum_probs=94.9

Q ss_pred             ceEEcCC--CCEEEEEeCCCcEEEEeCCCCCeEEe----cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe-e
Q psy8891           2 CAKFLGD--PTKVVSGSCDRTLKIWDLRSTETKFA----GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD-I   74 (203)
Q Consensus         2 ~~~~~~~--~~~l~t~s~D~~v~lwdl~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~-~   74 (203)
                      .++|.+.  ...|+|+..-+.||+||.+.++....    ...+...+...|+++.+++|..-+.+..+|++.++.... +
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~  286 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL  286 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence            4678877  78999999999999999997664321    223334466778999999999999999999999987655 3


Q ss_pred             e-eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEec
Q psy8891          75 E-LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLS  146 (203)
Q Consensus        75 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~  146 (203)
                      . ..|.++++..+|                   .+++|++++-|+.|||+|+.+..++...-...+++.+-+.
T Consensus       287 kg~tGsirsih~hp-------------------~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~  340 (412)
T KOG3881|consen  287 KGITGSIRSIHCHP-------------------THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLR  340 (412)
T ss_pred             CCccCCcceEEEcC-------------------CCceEEeeccceeEEEeecccchhhhhhhhhccccEEEec
Confidence            2 246666665554                   5569999999999999999987776655555555555443

>KOG0974|consensus

Probab=98.92  E-value=2.3e-08  Score=84.88  Aligned_cols=146  Identities=16%  Similarity=0.226  Sum_probs=96.1

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCe--EEecCc-CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE--eeeeCCe
Q psy8891           5 FLGDPTKVVSGSCDRTLKIWDLRSTET--KFAGSS-CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR--DIELHGK   79 (203)
Q Consensus         5 ~~~~~~~l~t~s~D~~v~lwdl~~~~~--~~~~~~-~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~--~~~~~~~   79 (203)
                      ++++.-++++|+.-+.|.+|+....+.  ...++. ..-.+.++.++.+++|.|+|.++|+|++.+.+...  -+.+.+.
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR  220 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR  220 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence            466777899999999999999874221  122221 11123456689999999999999999999887643  2333344


Q ss_pred             EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCee
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK  159 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  159 (203)
                      +..+.+                   .|.  .|+|++.|.+.++|+..- +.+.++..|..                    
T Consensus       221 vw~~~~-------------------~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g--------------------  258 (967)
T KOG0974|consen  221 VWACCF-------------------LPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSG--------------------  258 (967)
T ss_pred             eEEEEe-------------------ccc--eeEEeccceEEEEEeccc-ceehhhhhhhh--------------------
Confidence            554443                   344  799999999999996542 22222222210                    


Q ss_pred             EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         160 VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                        ..+.++...++....+|++.|+.+++||+....
T Consensus       259 --~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  259 --KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             --cceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence              012233344455678999999999999987543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=1.4e-07  Score=76.46  Aligned_cols=160  Identities=13%  Similarity=0.101  Sum_probs=91.0

Q ss_pred             CCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCC---CeEEEEECCCceEEEeeeeCCeEEEEEecCCCceE
Q psy8891          18 DRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFD---KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETK   92 (203)
Q Consensus        18 D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D---~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (203)
                      +.+|.+||.......  ..+........|+|+++.|+..+.+   ..|++||+++++........+..            
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~------------  250 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN------------  250 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc------------
Confidence            578999999764432  2222223446789999999888754   37999999876532111111111            


Q ss_pred             EEecCCceEEEEcCCCCEEEEee-CCCeEEEE--ECCCCceEEEEeccceEEEEEecCCcEEEEee---cCe-eEE----
Q psy8891          93 FAGSSCNDLVTYDGAGTTIISGH-FDKKVRFW--DFRAEEKVRDIELHGKITSLDLSKGKYYFVFA---EGF-KVQ----  161 (203)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iW--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~-~~~----  161 (203)
                             ....|+|||+.|+.++ .++.+.||  |+.+++..+.......+....++++...++..   .+. .+.    
T Consensus       251 -------~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        251 -------GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             -------CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence                   1246888888887764 57766655  66555533222222234455566554322211   110 000    


Q ss_pred             -----eee----EEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         162 -----CDF----TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       162 -----~~~----~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                           ..+    ....++|++++|+..+.++ +.+||+.+++...
T Consensus       324 ~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~  367 (429)
T PRK01742        324 SGGGASLVGGRGYSAQISADGKTLVMINGDN-VVKQDLTSGSTEV  367 (429)
T ss_pred             CCCCeEEecCCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence                 000    1244788999998887765 5569998887553

>KOG4497|consensus

Probab=98.89  E-value=7.1e-08  Score=72.93  Aligned_cols=128  Identities=14%  Similarity=0.207  Sum_probs=75.5

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEe-cCCCeEEEEECCCceEEEeeee-CC
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISG-HFDKKVRFWDFRAEEKVRDIEL-HG   78 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~-~~D~~i~vwd~~~~~~~~~~~~-~~   78 (203)
                      +.|||+|+++++++.- .+-+=|..+-+..  +.......-+-|..+.-+++++ ..|+.|.+|++.+.+-.-.+.. ..
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a   92 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA   92 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence            6899999999999875 5556566553311  1111111113455566666655 5788999999987654322221 11


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcE
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKY  150 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~  150 (203)
                      ++                   ..+.|+|+| .+|.+...|-+|.+|.+.+......--....++..+++++..
T Consensus        93 gl-------------------s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~  146 (447)
T KOG4497|consen   93 GL-------------------SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQ  146 (447)
T ss_pred             cc-------------------eeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCc
Confidence            11                   235788888 567777889999999998755432221222344455554443

>KOG2139|consensus

Probab=98.89  E-value=3.7e-08  Score=75.17  Aligned_cols=156  Identities=16%  Similarity=0.265  Sum_probs=96.3

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCC-eEEec--CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE-Eeee---
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTE-TKFAG--SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV-RDIE---   75 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~-~~~~~--~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~-~~~~---   75 (203)
                      ++|++.=-.++.+..|.+||+||-.... ++...  +.....++|-|.+...++-+.-+.|.+|.....-.. +.++   
T Consensus       104 ~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s  183 (445)
T KOG2139|consen  104 VAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMS  183 (445)
T ss_pred             EeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccccccccc
Confidence            4566655567889999999999987522 23333  233455778786665666667778999986432211 1100   


Q ss_pred             -eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC-CeEEEEECCCCceEEEEeccceEEEEEecCCcEEEE
Q psy8891          76 -LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD-KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFV  153 (203)
Q Consensus        76 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  153 (203)
                       .+.+|..   .|+       ..-.+...|.+||..+++++.+ ..|.|||+.++..+.-....                
T Consensus       184 ~~~~qvl~---~pg-------h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g----------------  237 (445)
T KOG2139|consen  184 THHLQVLQ---DPG-------HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG----------------  237 (445)
T ss_pred             ccchhhee---CCC-------CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC----------------
Confidence             0111100   000       0111234567778889998874 68999999987653221110                


Q ss_pred             eecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         154 FAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                             ...++.+.++||+.+|+.+.-|+..++|+.+
T Consensus       238 -------lgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  238 -------LGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             -------CCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence                   0123456688999999999999999999654

>KOG2394|consensus

Probab=98.89  E-value=1.2e-07  Score=75.67  Aligned_cols=164  Identities=14%  Similarity=0.222  Sum_probs=102.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCe-E-E-----ecCcCceEEEEe-CCCCEEEEecCCCeEEEEECCCceE-----EEe
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTET-K-F-----AGSSCNDLVTYD-GAGTTIISGHFDKKVRFWDFRAEEK-----VRD   73 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~-~-~-----~~~~~~~~~~~~-~~~~~l~s~~~D~~i~vwd~~~~~~-----~~~   73 (203)
                      +++--|.-|=.-|.|.+.|....+. + +     ........+.|- .+...++.+-++|.+.+||..-...     -..
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            4555566666667777777654211 0 1     011122334443 4556777888999999998621100     000


Q ss_pred             eee--------------CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce
Q psy8891          74 IEL--------------HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK  139 (203)
Q Consensus        74 ~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~  139 (203)
                      +..              ..++..+.+.         ..+..-.+|+|||++||++|.|+.+||+|..+.+.+..+.-   
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~---------~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---  330 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIG---------EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS---  330 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEec---------cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh---
Confidence            000              0122222222         12233467999999999999999999999887654322210   


Q ss_pred             EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         140 ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       140 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                                          ....+.+++.+||++|+++|++|.-|.+|.+..++++..-++|
T Consensus       331 --------------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH  373 (636)
T KOG2394|consen  331 --------------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH  373 (636)
T ss_pred             --------------------hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence                                1113457778899999999999999999999999999887665

>KOG0280|consensus

Probab=98.86  E-value=1.1e-07  Score=70.74  Aligned_cols=125  Identities=14%  Similarity=0.145  Sum_probs=79.2

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE----ecCcC-ceEEEE-eCCCCEEEEecCCCeEEEEECCCc-eEEEe
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF----AGSSC-NDLVTY-DGAGTTIISGHFDKKVRFWDFRAE-EKVRD   73 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~----~~~~~-~~~~~~-~~~~~~l~s~~~D~~i~vwd~~~~-~~~~~   73 (203)
                      ++..|++.+..++++-.+|.+-+-+......+.    +.+.. .....+ ..+++.++|||.|+.+..||+|.+ +.+..
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            466788999999999999998743332211110    11111 111222 356789999999999999999943 33322


Q ss_pred             --eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC-CCceEEEEeccceEEEE
Q psy8891          74 --IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR-AEEKVRDIELHGKITSL  143 (203)
Q Consensus        74 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~-~~~~~~~~~~~~~v~~~  143 (203)
                        ...+..|.++.-+|                  |.+.+|++|++|..|++||.| .++++..-...+.|--+
T Consensus       205 n~kvH~~GV~SI~ss~------------------~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi  259 (339)
T KOG0280|consen  205 NSKVHTSGVVSIYSSP------------------PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRI  259 (339)
T ss_pred             cceeeecceEEEecCC------------------CCCceEEEeccccceeeeehhcccCccccCccccceEEE
Confidence              12234555554443                  456799999999999999999 56666554444444433

>KOG1064|consensus

Probab=98.86  E-value=9.8e-09  Score=91.53  Aligned_cols=164  Identities=17%  Similarity=0.285  Sum_probs=107.9

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCeEE----ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe-E
Q psy8891           6 LGDPTKVVSGSCDRTLKIWDLRSTETKF----AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-I   80 (203)
Q Consensus         6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~~----~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~-v   80 (203)
                      +|..-.-+||+.||.|++|....+....    .+.....-..+..+|+...-+..||.+.+|.+... .....+-|.+ .
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk-~~~s~qchnk~~ 2295 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK-PYTSWQCHNKAL 2295 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc-ceeccccCCccc
Confidence            4555667899999999999997655432    12222222346677888888899999999998632 2211111110 0


Q ss_pred             EEEEe----------cCC------CceEEEe---------cCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          81 TSLDL----------SKG------TETKFAG---------SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        81 ~~~~~----------~~~------~~~~~~~---------~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                      ..+.|          +++      +++++.+         ....+++.|-|..+.|+|||.+|.|.+||++..+.++.++
T Consensus      2296 ~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2296 SDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             cceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence            11111          111      1111111         1113467899999999999999999999999887766553


Q ss_pred             ccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         136 LHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       136 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                      .-                                . ...+|++|+..|+++||++.+..++++++..|
T Consensus      2376 ~~--------------------------------~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2376 AL--------------------------------D-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             hh--------------------------------h-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence            20                                0 23579999999999999999999999987654

>KOG0771|consensus

Probab=98.86  E-value=1.2e-08  Score=78.82  Aligned_cols=74  Identities=23%  Similarity=0.533  Sum_probs=59.3

Q ss_pred             eEEEEeCCCCEEEEecCCCeEEEEECCCceEE-EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC
Q psy8891          40 DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV-RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK  118 (203)
Q Consensus        40 ~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  118 (203)
                      .++++.+++..|++++.||++|||+..+...+ .+...+++|.+++|+|                   ||..|++.+.| 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-------------------dgk~lasig~d-  207 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-------------------DGKFLASIGAD-  207 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-------------------CCcEEEEecCC-
Confidence            45788999999999999999999997665543 4445667888887665                   56689999999 


Q ss_pred             eEEEEECCCCceEEE
Q psy8891         119 KVRFWDFRAEEKVRD  133 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~  133 (203)
                      ..++|+.+++.++..
T Consensus       208 ~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  208 SARVWSVNTGAALAR  222 (398)
T ss_pred             ceEEEEeccCchhhh
Confidence            999999999865543

>KOG2139|consensus

Probab=98.85  E-value=2.5e-07  Score=70.73  Aligned_cols=93  Identities=19%  Similarity=0.252  Sum_probs=66.5

Q ss_pred             ceEEcCCCCEEEEEeC-CCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECC-CceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSC-DRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR-AEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~-~~~~~~~~~~   76 (203)
                      +++|.+||..++|+|. |..|++||..++...   ..+......+.|+|++.+|+.+..|+..++|... +....+-.-.
T Consensus       200 smqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg  279 (445)
T KOG2139|consen  200 SMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG  279 (445)
T ss_pred             EEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc
Confidence            4688999999999987 678999999886532   1333445678899999999999999999999643 3334444444


Q ss_pred             CCeEEEEEecCCCceEEE
Q psy8891          77 HGKITSLDLSKGTETKFA   94 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~   94 (203)
                      .+.|....++|.+..++.
T Consensus       280 sgrvqtacWspcGsfLLf  297 (445)
T KOG2139|consen  280 SGRVQTACWSPCGSFLLF  297 (445)
T ss_pred             CCceeeeeecCCCCEEEE
Confidence            456666555555554443

>KOG3914|consensus

Probab=98.83  E-value=1e-07  Score=73.46  Aligned_cols=74  Identities=22%  Similarity=0.339  Sum_probs=52.9

Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-cc-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEe
Q psy8891         102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-HG-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVG  179 (203)
Q Consensus       102 ~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  179 (203)
                      +.++||++.|+++..|.+||+=....-..+..+-+ |. -|..+++                         .++..|+||
T Consensus       157 VavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl-------------------------~~~~~LlS~  211 (390)
T KOG3914|consen  157 VAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL-------------------------TDNYLLLSG  211 (390)
T ss_pred             eeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee-------------------------ccCceeeec
Confidence            45677888999999999999976654444444333 11 1222221                         255678999


Q ss_pred             cCCCcEEEEeCCCceeeeeec
Q psy8891         180 SIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       180 s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      |.|++|++||..+|+.+.++.
T Consensus       212 sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  212 SGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCCcEEEEecccCCcccccc
Confidence            999999999999999988764

>KOG4497|consensus

Probab=98.82  E-value=1.9e-07  Score=70.64  Aligned_cols=198  Identities=14%  Similarity=0.263  Sum_probs=113.5

Q ss_pred             EcCCCCEEE-EEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891           5 FLGDPTKVV-SGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEEKVRDIELHGK   79 (203)
Q Consensus         5 ~~~~~~~l~-t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~   79 (203)
                      |..|...+. ....|+.|.+|++..++-.   ..++.......|+|+|+ .|.+...|-.|.||.+.+.+....--....
T Consensus        56 W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~  135 (447)
T KOG4497|consen   56 WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN  135 (447)
T ss_pred             eeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccC
Confidence            555666544 4677899999999876632   22344445578999995 667778899999999987764321101111


Q ss_pred             EE---------------------------------------------EEEecCCCceEEEecCC-------------ceE
Q psy8891          80 IT---------------------------------------------SLDLSKGTETKFAGSSC-------------NDL  101 (203)
Q Consensus        80 v~---------------------------------------------~~~~~~~~~~~~~~~~~-------------~~~  101 (203)
                      +.                                             .++++|++..+..=..+             ...
T Consensus       136 ~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~  215 (447)
T KOG4497|consen  136 VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKF  215 (447)
T ss_pred             ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeE
Confidence            23                                             33444544433221111             113


Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc--------------------eEEEEEecCCcEEE---------
Q psy8891         102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG--------------------KITSLDLSKGKYYF---------  152 (203)
Q Consensus       102 ~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~--------------------~v~~~~~~~~~~~~---------  152 (203)
                      +.|+|-++.|+.|++|+.+|+-|--+.++..++-...                    ...++++.+.+.-.         
T Consensus       216 v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~  295 (447)
T KOG4497|consen  216 VEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI  295 (447)
T ss_pred             EEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence            5688989999999999999987644433322221000                    01112222221100         


Q ss_pred             -------EeecCe-------eEEeeeEEEEEEcCCCEEEEec--CCCcEEEEeCCCceeeeeeccC
Q psy8891         153 -------VFAEGF-------KVQCDFTRAVFVVDDDYVAVGS--IDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       153 -------~~~~~~-------~~~~~~~~~~~~~~~~~l~s~s--~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                             +.-...       ...+..-.++|++|..+++|--  .-..+-+||+...++..++.+.
T Consensus       296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk  361 (447)
T KOG4497|consen  296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK  361 (447)
T ss_pred             hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhc
Confidence                   000000       1123345678999988888743  3456899999887777766543

>KOG4227|consensus

Probab=98.81  E-value=7.5e-07  Score=68.95  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=75.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCc---eE--EEEeCCCCEEEEecCCCeEEEEECCCceE-EEee-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCN---DL--VTYDGAGTTIISGHFDKKVRFWDFRAEEK-VRDI-   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~---~~--~~~~~~~~~l~s~~~D~~i~vwd~~~~~~-~~~~-   74 (203)
                      |..|....+.+++|..+++|.+-|+++.+.+.....-+   .+  +..+|..+.+++.+.++.+.+||.+..+. ...+ 
T Consensus       110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~  189 (609)
T KOG4227|consen  110 SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL  189 (609)
T ss_pred             EEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee
Confidence            77888899999999999999999999877653322111   22  23456778999999999999999987652 1110 


Q ss_pred             --eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC
Q psy8891          75 --ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        75 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~  128 (203)
                        ........+.|+|...                  ..|++.+..+-+.+||++..
T Consensus       190 ~AN~~~~F~t~~F~P~~P------------------~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  190 PANSGKNFYTAEFHPETP------------------ALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             ecCCCccceeeeecCCCc------------------eeEEeccccCCCCceeeccc
Confidence              1122344445554333                  46778888888999998754

>KOG1963|consensus

Probab=98.80  E-value=1.4e-06  Score=73.16  Aligned_cols=77  Identities=16%  Similarity=0.195  Sum_probs=52.4

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecC---cCceEEEEeCC-C--CEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS---SCNDLVTYDGA-G--TTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~---~~~~~~~~~~~-~--~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      .+|++|++.++... +.+|++|-+.++++.....   .....+.+.|. .  .++++++.||+|++||...++.++++..
T Consensus        22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             cccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            46889998877664 6899999998876532111   11111222332 2  4788999999999999999998887765


Q ss_pred             CCeE
Q psy8891          77 HGKI   80 (203)
Q Consensus        77 ~~~v   80 (203)
                      +.++
T Consensus       101 ~~~v  104 (792)
T KOG1963|consen  101 NLPV  104 (792)
T ss_pred             CCce
Confidence            4433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.79  E-value=6.7e-07  Score=71.00  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=77.4

Q ss_pred             EEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce
Q psy8891          51 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK  130 (203)
Q Consensus        51 l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~  130 (203)
                      +++-..++.+.|.|..+.+.+..+...+.+..                  ...++|||++++.++.|+.|.++|+.+.+.
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~------------------~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~   70 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHA------------------GLKFSPDGRYLYVANRDGTVSVIDLATGKV   70 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEE------------------EEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCcee------------------EEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence            34556789999999999888877765433211                  134678889999999999999999999998


Q ss_pred             EEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec-CCCcEEEEeCCCceeeeeec
Q psy8891         131 VRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS-IDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       131 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ++++........+                        .+++||++++++. .++.+.++|.++.+++++++
T Consensus        71 v~~i~~G~~~~~i------------------------~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   71 VATIKVGGNPRGI------------------------AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEEEE-SSEEEEE------------------------EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             EEEEecCCCcceE------------------------EEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            8887665544433                        3457889888776 58999999999999999875

...

>KOG1587|consensus

Probab=98.78  E-value=5e-07  Score=74.53  Aligned_cols=159  Identities=16%  Similarity=0.193  Sum_probs=99.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCe---------EE------ecCcCceEEEEe-CCCCEEEEecCCCeEEE---EECCCce-
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTET---------KF------AGSSCNDLVTYD-GAGTTIISGHFDKKVRF---WDFRAEE-   69 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~---------~~------~~~~~~~~~~~~-~~~~~l~s~~~D~~i~v---wd~~~~~-   69 (203)
                      .-++++|.||.|+.|+++.-..         ..      ........+.|. .+++.++.|..+|.|..   ++.+.+. 
T Consensus       306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence            4599999999999999864111         11      011112234444 36779999999998877   3333333 


Q ss_pred             -----EEEeeeeCCeEEEEEecCCCceEEEecCCce------------------------EEEEcCCC-CEEEEeeCCCe
Q psy8891          70 -----KVRDIELHGKITSLDLSKGTETKFAGSSCND------------------------LVTYDGAG-TTIISGHFDKK  119 (203)
Q Consensus        70 -----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~-~~l~s~s~d~~  119 (203)
                           ......+.++|+.+..+|-...++.......                        -+.|+|.- ..++++..||.
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence                 1223344578999998886555443222211                        25677764 46777777999


Q ss_pred             EEEEECCCCc--eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         120 VRFWDFRAEE--KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       120 i~iWd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      |.+||+....  +...+.....                       ......+++.++.|+.|...|++++|++.
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~~~-----------------------~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVCSP-----------------------ALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             eehhhhhccccCCccccccccc-----------------------ccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            9999997532  2222221111                       11223345568999999999999999985

>KOG0644|consensus

Probab=98.77  E-value=4e-09  Score=87.82  Aligned_cols=103  Identities=29%  Similarity=0.497  Sum_probs=80.1

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeE
Q psy8891          42 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV  120 (203)
Q Consensus        42 ~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  120 (203)
                      +.++..+.++++|+.|..+|||...+..++..+.+| +.++.++.+...                   ..++++|.|..|
T Consensus       196 a~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-------------------~~iaaaS~D~vI  256 (1113)
T KOG0644|consen  196 AIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-------------------TMIAAASNDKVI  256 (1113)
T ss_pred             eeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-------------------hhhhhcccCceE
Confidence            457788999999999999999999998888888776 456666654322                   368899999999


Q ss_pred             EEEECCCCceEEEEeccc-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         121 RFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       121 ~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ++|-++.+.++..+..+. .|++++++                        |    +.+.+.||++++||.+
T Consensus       257 rvWrl~~~~pvsvLrghtgavtaiafs------------------------P----~~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  257 RVWRLPDGAPVSVLRGHTGAVTAIAFS------------------------P----RASSSDDGTCRIWDAR  300 (1113)
T ss_pred             EEEecCCCchHHHHhccccceeeeccC------------------------c----cccCCCCCceEecccc
Confidence            999999998877666553 35544444                        3    2377899999999987

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.77  E-value=4.1e-05  Score=60.12  Aligned_cols=195  Identities=12%  Similarity=0.121  Sum_probs=115.5

Q ss_pred             EEcCCCCEEEEEeC----------CCcEEEEeCCCCCeEEecC----------cCceEEEEeCCCCEEEEecC--CCeEE
Q psy8891           4 KFLGDPTKVVSGSC----------DRTLKIWDLRSTETKFAGS----------SCNDLVTYDGAGTTIISGHF--DKKVR   61 (203)
Q Consensus         4 ~~~~~~~~l~t~s~----------D~~v~lwdl~~~~~~~~~~----------~~~~~~~~~~~~~~l~s~~~--D~~i~   61 (203)
                      .++||++.|+.+..          +..|.+||+.+.+......          .......++++|++|+....  +..+-
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence            37999998877655          8999999999866432111          11225678999998887763  68999


Q ss_pred             EEECCCceEEEeeeeCCeEEE--------EEecCCCceEEEec--------CCceE-----------EEEcC-CCCEEEE
Q psy8891          62 FWDFRAEEKVRDIELHGKITS--------LDLSKGTETKFAGS--------SCNDL-----------VTYDG-AGTTIIS  113 (203)
Q Consensus        62 vwd~~~~~~~~~~~~~~~v~~--------~~~~~~~~~~~~~~--------~~~~~-----------~~~~~-~~~~l~s  113 (203)
                      |.|+.+++.+.++...+...-        +.++.|+.......        ....+           -.|.+ +|+.++.
T Consensus       132 VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v  211 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP  211 (352)
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence            999999998887765432111        12233333322000        00000           01233 6766655


Q ss_pred             eeCCCeEEEEECCCCc-----eEEEEecc--------ceEEEEEecCC-cEEEEeecC--------------------ee
Q psy8891         114 GHFDKKVRFWDFRAEE-----KVRDIELH--------GKITSLDLSKG-KYYFVFAEG--------------------FK  159 (203)
Q Consensus       114 ~s~d~~i~iWd~~~~~-----~~~~~~~~--------~~v~~~~~~~~-~~~~~~~~~--------------------~~  159 (203)
                      ... |+|.+-|+....     ....+...        +....+.++++ ..+++...+                    .+
T Consensus       212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k  290 (352)
T TIGR02658       212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK  290 (352)
T ss_pred             ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence            544 999999965432     22222111        12333666644 333331100                    00


Q ss_pred             E------EeeeEEEEEEcCCC-EEEEec-CCCcEEEEeCCCceeeeee
Q psy8891         160 V------QCDFTRAVFVVDDD-YVAVGS-IDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       160 ~------~~~~~~~~~~~~~~-~l~s~s-~d~~v~~wd~~~~~~~~~~  199 (203)
                      .      ......+.+++|++ .|++.. .++.|.+.|..+++.++++
T Consensus       291 vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       291 RLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            0      11233567889999 777666 5888999999999999988

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2695|consensus

Probab=98.76  E-value=5.3e-08  Score=73.93  Aligned_cols=119  Identities=18%  Similarity=0.246  Sum_probs=81.6

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCC-------eEEecCcCceEE-EEeCCCCEEEEecCCCeEEEEECCCceE---EEe
Q psy8891           5 FLGDPTKVVSGSCDRTLKIWDLRSTE-------TKFAGSSCNDLV-TYDGAGTTIISGHFDKKVRFWDFRAEEK---VRD   73 (203)
Q Consensus         5 ~~~~~~~l~t~s~D~~v~lwdl~~~~-------~~~~~~~~~~~~-~~~~~~~~l~s~~~D~~i~vwd~~~~~~---~~~   73 (203)
                      |...+..+..|...|.|...||+...       ..+.+......+ ...-+++.|++.+++|+|++||+|.-++   +++
T Consensus       260 f~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q  339 (425)
T KOG2695|consen  260 FAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ  339 (425)
T ss_pred             hcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceee
Confidence            45567889999999999999998631       111121111111 1222567999999999999999998776   555


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK  139 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~  139 (203)
                      .++|  |+..+..+              ....+....|++++.|...|||.++.+..+.+++.+..
T Consensus       340 YeGH--vN~~a~l~--------------~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  340 YEGH--VNLSAYLP--------------AHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             eecc--cccccccc--------------cccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence            5444  33322222              22345566899999999999999999998888776543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.75  E-value=2.7e-06  Score=69.12  Aligned_cols=110  Identities=11%  Similarity=0.112  Sum_probs=67.0

Q ss_pred             ceEEcCCCCEEEEEeCC---CcEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEE-EecCCC--eEEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCD---RTLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTII-SGHFDK--KVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D---~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~-s~~~D~--~i~vwd~~~~~~~~~   73 (203)
                      ..+|+|||++|+..+.+   ..|.+||+.+++....  .........|+|+++.|+ +.+.++  .|.+||+.+++... 
T Consensus       203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-  281 (430)
T PRK00178        203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-  281 (430)
T ss_pred             eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-
Confidence            45899999998876644   3688999987654321  111223367899998775 555555  68888988765422 


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CC--eEEEEECCCCce
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DK--KVRFWDFRAEEK  130 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~--~i~iWd~~~~~~  130 (203)
                      +..+..+                  .....|+|+|+.|+..+. ++  .|.++|+.+++.
T Consensus       282 lt~~~~~------------------~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        282 VTNHPAI------------------DTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             cccCCCC------------------cCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            2211100                  011357788877766553 22  577778776653

>KOG2111|consensus

Probab=98.75  E-value=4.4e-06  Score=62.96  Aligned_cols=77  Identities=16%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             ecCCceEEEEcCCCCEEEEeeCCCe-EEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCC
Q psy8891          95 GSSCNDLVTYDGAGTTIISGHFDKK-VRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDD  173 (203)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~s~s~d~~-i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (203)
                      +.....++..+.+|..+||+|..|| |||||..+|+.+.++.-...                     ..++-+++|+|+.
T Consensus       180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---------------------~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD---------------------RADIYCIAFSPNS  238 (346)
T ss_pred             ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---------------------hheEEEEEeCCCc
Confidence            3344455677889999999999996 69999999999888753211                     1134466788999


Q ss_pred             CEEEEecCCCcEEEEeCCC
Q psy8891         174 DYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       174 ~~l~s~s~d~~v~~wd~~~  192 (203)
                      .+|+.+|..|+++|+.++.
T Consensus       239 s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  239 SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cEEEEEcCCCeEEEEEeec
Confidence            9999999999999998764

>KOG2695|consensus

Probab=98.75  E-value=7.2e-08  Score=73.22  Aligned_cols=148  Identities=14%  Similarity=0.231  Sum_probs=97.0

Q ss_pred             EEEeCCCcEEEEeCCCCCeEEecCcCceEE--EEeCCCCEEEEecCCCeEEEEECCCc-----eEEEeeeeCCeEEEEEe
Q psy8891          13 VSGSCDRTLKIWDLRSTETKFAGSSCNDLV--TYDGAGTTIISGHFDKKVRFWDFRAE-----EKVRDIELHGKITSLDL   85 (203)
Q Consensus        13 ~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~D~~i~vwd~~~~-----~~~~~~~~~~~v~~~~~   85 (203)
                      ++.+-+..|-+-|++++........ .++.  -|...+++|+.|-..|.|.++|+|..     .+.+.+-++..|+++..
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sk-sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSK-SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccccc-hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence            5566677788888877543211111 1222  24456789999999999999999865     23334444455555443


Q ss_pred             cCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEeccceEEEEEecCCcEEEEeecCeeEEe
Q psy8891          86 SKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VRDIELHGKITSLDLSKGKYYFVFAEGFKVQC  162 (203)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  162 (203)
                      -                  ..+++.|.+.+.+++|++||+|.-++   +...+  ++++..+--                
T Consensus       307 L------------------q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l----------------  350 (425)
T KOG2695|consen  307 L------------------QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYL----------------  350 (425)
T ss_pred             h------------------ccccceEeeccCcCceeEeeehhhhcccceeeee--ccccccccc----------------
Confidence            2                  23456888889999999999997666   33333  333322110                


Q ss_pred             eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                         .....+....+++++.|=..|||.++.|+++.+++
T Consensus       351 ---~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  351 ---PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             ---ccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence               11122455678889999999999999999999986

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.73  E-value=3.4e-06  Score=68.83  Aligned_cols=110  Identities=13%  Similarity=0.135  Sum_probs=65.3

Q ss_pred             ceEEcCCCCEEEEEeCC-C--cEEEEeCCCCCeE-Ee-cCcCceEEEEeCCCCEEE-EecCCCe--EEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCD-R--TLKIWDLRSTETK-FA-GSSCNDLVTYDGAGTTII-SGHFDKK--VRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D-~--~v~lwdl~~~~~~-~~-~~~~~~~~~~~~~~~~l~-s~~~D~~--i~vwd~~~~~~~~~   73 (203)
                      +.+|+|||++|+..+.+ +  .|.+||+.+++.. .. .........|+|+++.|+ +.+.++.  |.++|+.+++... 
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-  300 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-  300 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-
Confidence            46899999998876543 3  5888898876532 11 122223467899999765 4566665  7777887665322 


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CC--eEEEEECCCCce
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DK--KVRFWDFRAEEK  130 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~--~i~iWd~~~~~~  130 (203)
                      +..+..                  ......|+|||+.|+..+. ++  .|.++|+.+++.
T Consensus       301 lt~~~~------------------~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        301 ITRHRA------------------IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             CccCCC------------------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            211110                  0112357788877765553 33  466667766653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=3e-06  Score=68.88  Aligned_cols=153  Identities=14%  Similarity=0.122  Sum_probs=87.6

Q ss_pred             ceEEcCCCCEEE-EEeCCC--cEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEec-CCCe--EEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVV-SGSCDR--TLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGH-FDKK--VRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~-t~s~D~--~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~-~D~~--i~vwd~~~~~~~~~   73 (203)
                      +.+|+|||+.|+ +.+.++  .|.+||+.+++...  ..........|+|+++.|+..+ .++.  |.++|+..++.. .
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~  330 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-R  330 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-E
Confidence            468999999774 566666  59999998765422  1111223367899999777665 4554  555566554322 1


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC---eEEEEECCCCceEEEEeccceEEEEEecCCcE
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAEEKVRDIELHGKITSLDLSKGKY  150 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~  150 (203)
                      +...+.                  .+....|+|+|+.|+..+.++   .|.+||+.+++.. .+......          
T Consensus       331 lt~~g~------------------~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~----------  381 (433)
T PRK04922        331 LTFQGN------------------YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLD----------  381 (433)
T ss_pred             eecCCC------------------CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCC----------
Confidence            111110                  011246788888887765433   6999999876542 22111000          


Q ss_pred             EEEeecCeeEEeeeEEEEEEcCCCEEEEecCC---CcEEEEeCCCceeeeee
Q psy8891         151 YFVFAEGFKVQCDFTRAVFVVDDDYVAVGSID---GNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---~~v~~wd~~~~~~~~~~  199 (203)
                                    ....++|++++++..+.+   ..+.+++++. ...+.+
T Consensus       382 --------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l  418 (433)
T PRK04922        382 --------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRL  418 (433)
T ss_pred             --------------CCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEc
Confidence                          012466788877666543   3577778753 344444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=1.9e-05  Score=64.14  Aligned_cols=65  Identities=8%  Similarity=-0.036  Sum_probs=37.4

Q ss_pred             eEEcCCCCE--E-EEEeCCCc--EEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecC-----CCeEEEEECCC
Q psy8891           3 AKFLGDPTK--V-VSGSCDRT--LKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHF-----DKKVRFWDFRA   67 (203)
Q Consensus         3 ~~~~~~~~~--l-~t~s~D~~--v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~-----D~~i~vwd~~~   67 (203)
                      =+|||||+.  + ++...++.  |.+.++.+++..  ......+....|+|||+.|+..+.     |-.+.+|++..
T Consensus       190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~  266 (428)
T PRK01029        190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET  266 (428)
T ss_pred             ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence            479999975  2 34544544  666677765432  212222333578999987765442     33445577654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=1.5e-05  Score=64.71  Aligned_cols=73  Identities=7%  Similarity=-0.003  Sum_probs=42.7

Q ss_pred             cEEEEeCCCCCe--EEecCcCceEEEEeCCCCEEEEecC---CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceE
Q psy8891          20 TLKIWDLRSTET--KFAGSSCNDLVTYDGAGTTIISGHF---DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETK   92 (203)
Q Consensus        20 ~v~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~---D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (203)
                      .|.+||......  ...+........|+|+|+.|+..+.   +..|.+||+..++........+.+....++|++..+
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence            688999876432  2333333445689999998876543   457999999877543222222223334455554433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.65  E-value=1e-05  Score=72.39  Aligned_cols=184  Identities=9%  Similarity=0.047  Sum_probs=103.6

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeEE-ecC----------------cCceEEEEeCCCC-EEEEecCCCeEEE
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETKF-AGS----------------SCNDLVTYDGAGT-TIISGHFDKKVRF   62 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~----------------~~~~~~~~~~~~~-~l~s~~~D~~i~v   62 (203)
                      .++|+| ++...++.+.++.|++||..++.... .+.                ....-++++++++ ..++-+.++.|++
T Consensus       687 gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv  766 (1057)
T PLN02919        687 DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRA  766 (1057)
T ss_pred             EEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEE
Confidence            467888 55666777888999999987654321 100                0011256788887 4556667799999


Q ss_pred             EECCCceEEEeeeeCCeEE---EEEecC-CCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc
Q psy8891          63 WDFRAEEKVRDIELHGKIT---SLDLSK-GTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG  138 (203)
Q Consensus        63 wd~~~~~~~~~~~~~~~v~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~  138 (203)
                      ||+.++.... +.....+.   ...+.. ++...........-++++++|...++-+.+++|++||..++...... ..+
T Consensus       767 ~D~~tg~~~~-~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G  844 (1057)
T PLN02919        767 LDLKTGGSRL-LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTG  844 (1057)
T ss_pred             EECCCCcEEE-EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccC
Confidence            9998765321 11100000   001100 00000000001123567889988888889999999999876543221 111


Q ss_pred             eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         139 KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       139 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      .. .  ...+...   ...+   .....++++++++.+++.+.++.|++||+++++..
T Consensus       845 ~~-G--~~dG~~~---~a~l---~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~  893 (1057)
T PLN02919        845 KA-G--FKDGKAL---KAQL---SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA  893 (1057)
T ss_pred             Cc-C--CCCCccc---cccc---CCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence            00 0  0000000   0000   01234567789999999999999999999988763

>KOG1524|consensus

Probab=98.63  E-value=3.8e-07  Score=73.07  Aligned_cols=174  Identities=13%  Similarity=0.169  Sum_probs=96.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe------cCcCceEE----EEeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA------GSSCNDLV----TYDGAGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~------~~~~~~~~----~~~~~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      ||.|+.....+++++.+..++-||+........      .+....+.    .=..+...++-++.||.+.|-+- .+...
T Consensus        19 ~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k-~~rVE   97 (737)
T KOG1524|consen   19 CVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNK-SARVE   97 (737)
T ss_pred             eecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecc-cchhh
Confidence            566777777666666555555556543221100      00000000    00123457888889998888762 23332


Q ss_pred             EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-eccceEEEEEecCCcE
Q psy8891          72 RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-ELHGKITSLDLSKGKY  150 (203)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~-~~~~~v~~~~~~~~~~  150 (203)
                      +.+..|.                  .......|+|||.-|++++.||.|++|.- +|-...++ +....|.++.+.++..
T Consensus        98 ~sv~AH~------------------~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~  158 (737)
T KOG1524|consen   98 RSISAHA------------------AAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSN  158 (737)
T ss_pred             hhhhhhh------------------hhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCC
Confidence            3332221                  11122358889999999999999999984 33221111 1223466666665543


Q ss_pred             EEEeecCeeE-----------------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         151 YFVFAEGFKV-----------------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       151 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      -.+...+...                 ..-+.++..++.++.+++|++|=..++||.. |+.+
T Consensus       159 ~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~L  220 (737)
T KOG1524|consen  159 SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANL  220 (737)
T ss_pred             ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccc
Confidence            3332222110                 1123445567888999999999999999965 4443

>KOG2321|consensus

Probab=98.60  E-value=1.6e-06  Score=69.99  Aligned_cols=161  Identities=17%  Similarity=0.238  Sum_probs=99.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEec
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLS   86 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~   86 (203)
                      .-|+.++....|.-.+|+.+.-+  +. .......+...+-..+|++|+.||.+-.||.+.......+.....|   ...
T Consensus       146 cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v---~s~  222 (703)
T KOG2321|consen  146 CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV---NSH  222 (703)
T ss_pred             ccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccccc---CCC
Confidence            33566666677777788876532  22 1233445666666668999999999999999987766555432221   112


Q ss_pred             CCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc--ceEEEEEecCCcEEEEeecCeeEEeee
Q psy8891          87 KGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH--GKITSLDLSKGKYYFVFAEGFKVQCDF  164 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~  164 (203)
                      |..+.    ....+.+.|+.+|-.++.|..+|.|.|+|+++.+++..-...  -+|..+.+-+.                
T Consensus       223 pg~~~----~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~----------------  282 (703)
T KOG2321|consen  223 PGGDA----APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT----------------  282 (703)
T ss_pred             ccccc----cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc----------------
Confidence            22211    112344667778889999999999999999988775432211  12332222110                


Q ss_pred             EEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         165 TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       165 ~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                            -+...++ ......++|||-.+|+....++
T Consensus       283 ------~~q~~v~-S~Dk~~~kiWd~~~Gk~~asiE  311 (703)
T KOG2321|consen  283 ------DQQNKVV-SMDKRILKIWDECTGKPMASIE  311 (703)
T ss_pred             ------CCCceEE-ecchHHhhhcccccCCceeecc
Confidence                  0122333 3456789999999998887765

>KOG1523|consensus

Probab=98.57  E-value=1.4e-05  Score=60.47  Aligned_cols=128  Identities=19%  Similarity=0.235  Sum_probs=94.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe------EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE---E
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET------KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV---R   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~------~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~---~   72 (203)
                      ++.|+|...+|+|++.|..-.+|....+..      +.........+.|+|.++.++.||--+.|-||=++.+.--   +
T Consensus        60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK  139 (361)
T KOG1523|consen   60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK  139 (361)
T ss_pred             EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence            578999999999999999999999843221      2233333456789999999999999999999987665422   1


Q ss_pred             ee--eeCCeEEEEEecCCCceEEEecCCce-----------------------------------------EEEEcCCCC
Q psy8891          73 DI--ELHGKITSLDLSKGTETKFAGSSCND-----------------------------------------LVTYDGAGT  109 (203)
Q Consensus        73 ~~--~~~~~v~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~  109 (203)
                      .+  .....|.+++++|..-.+.+|+....                                         -+.|+|.|.
T Consensus       140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~  219 (361)
T KOG1523|consen  140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN  219 (361)
T ss_pred             hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence            11  22356899999998777776652211                                         146788899


Q ss_pred             EEEEeeCCCeEEEEECCCCc
Q psy8891         110 TIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus       110 ~l~s~s~d~~i~iWd~~~~~  129 (203)
                      .|+-.+-|.++.+-|.....
T Consensus       220 ~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  220 RLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             EeeEecCCCceEEeecCCCc
Confidence            99999999999998876543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=1.2e-05  Score=65.49  Aligned_cols=136  Identities=15%  Similarity=0.156  Sum_probs=76.6

Q ss_pred             CcEEEEeCCCCCe--EEecCcCceEEEEeCCCCEEEEecC---CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEE
Q psy8891          19 RTLKIWDLRSTET--KFAGSSCNDLVTYDGAGTTIISGHF---DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKF   93 (203)
Q Consensus        19 ~~v~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~---D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (203)
                      ..|.+||......  ...+........|+|+++.|+..+.   +..|.+||+.+++........+.+..           
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~-----------  250 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFA-----------  250 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccC-----------
Confidence            3788888876443  2223333444678999998887764   46899999987764321111122222           


Q ss_pred             EecCCceEEEEcCCCCEEE-EeeCCCe--EEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEE
Q psy8891          94 AGSSCNDLVTYDGAGTTII-SGHFDKK--VRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV  170 (203)
Q Consensus        94 ~~~~~~~~~~~~~~~~~l~-s~s~d~~--i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (203)
                              ..|+|||+.|+ +.+.++.  |.+||+.+++.. .+..+..+                       .....++
T Consensus       251 --------~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~-----------------------~~~~~~s  298 (435)
T PRK05137        251 --------PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAI-----------------------DTSPSYS  298 (435)
T ss_pred             --------cEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCc-----------------------cCceeEc
Confidence                    34777777654 5555554  777788776542 22111100                       0123456


Q ss_pred             cCCCEEEEecC-C--CcEEEEeCCCceeee
Q psy8891         171 VDDDYVAVGSI-D--GNIYVWDCNTEQVEA  197 (203)
Q Consensus       171 ~~~~~l~s~s~-d--~~v~~wd~~~~~~~~  197 (203)
                      ||++.|+..+. +  ..|+++|++.++..+
T Consensus       299 pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~  328 (435)
T PRK05137        299 PDGSQIVFESDRSGSPQLYVMNADGSNPRR  328 (435)
T ss_pred             CCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence            77776665543 2  257777776655443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.55  E-value=8.6e-05  Score=59.28  Aligned_cols=92  Identities=16%  Similarity=0.259  Sum_probs=51.9

Q ss_pred             CCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecC----------eeE-Ee-eeE---EEEEEcC
Q psy8891         108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEG----------FKV-QC-DFT---RAVFVVD  172 (203)
Q Consensus       108 ~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~-~~-~~~---~~~~~~~  172 (203)
                      +..++.++.++.+..+|..+++.+...+.... ....+..+..+.....+          ... .. ...   .......
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~  319 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV  319 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE
Confidence            34677788889999999988877665542211 11111111111111111          000 00 000   0001124


Q ss_pred             CCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         173 DDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       173 ~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ++.++.++.||.|+++|..+|+.+..++
T Consensus       320 g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       320 GGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            6788999999999999999999988775

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2111|consensus

Probab=98.55  E-value=2.6e-06  Score=64.14  Aligned_cols=96  Identities=18%  Similarity=0.213  Sum_probs=71.8

Q ss_pred             EeCCCcEEEEeCCCCCe-----EEecCcCceEEEEeCCCCEEEEecCCCe-EEEEECCCceEEEeeee---CCeEEEEEe
Q psy8891          15 GSCDRTLKIWDLRSTET-----KFAGSSCNDLVTYDGAGTTIISGHFDKK-VRFWDFRAEEKVRDIEL---HGKITSLDL   85 (203)
Q Consensus        15 ~s~D~~v~lwdl~~~~~-----~~~~~~~~~~~~~~~~~~~l~s~~~D~~-i~vwd~~~~~~~~~~~~---~~~v~~~~~   85 (203)
                      |=.-|.|++-|+...+.     ..++......++...+|..|||+|..|+ |||||..+++.+.+++-   +..|.+++|
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF  234 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF  234 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence            44468889988865332     2233444556778889999999999995 78999999999888752   355777665


Q ss_pred             cCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891          86 SKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                      +|                   ++.+|+.+|.-||++|+.++...
T Consensus       235 Sp-------------------~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  235 SP-------------------NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CC-------------------CccEEEEEcCCCeEEEEEeecCC
Confidence            54                   56689999999999999987543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=1.1e-05  Score=65.43  Aligned_cols=110  Identities=10%  Similarity=0.098  Sum_probs=65.8

Q ss_pred             ceEEcCCCCEEE-EEeCCCcEEEEeC--CCCCeE-E-ecCcCceEEEEeCCCCEEEEec-CCCeEEEEECC--CceEEEe
Q psy8891           2 CAKFLGDPTKVV-SGSCDRTLKIWDL--RSTETK-F-AGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFR--AEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~-t~s~D~~v~lwdl--~~~~~~-~-~~~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~--~~~~~~~   73 (203)
                      +.+|+|||+.|+ +.+.|+...+|.+  .++... . ..........|+|+++.|+..+ .++...||.+.  .++. ..
T Consensus       244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~  322 (427)
T PRK02889        244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QR  322 (427)
T ss_pred             ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EE
Confidence            468999999876 6788888777765  333321 1 1111222356899999776554 45667777653  2221 11


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC---eEEEEECCCCce
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAEEK  130 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~i~iWd~~~~~~  130 (203)
                      +         .+...         .+....|+|+|+.|+..+.++   .|.+||+.+++.
T Consensus       323 l---------t~~g~---------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        323 V---------TFTGS---------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             E---------ecCCC---------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            1         11100         011235888998888776554   699999987653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.51  E-value=0.00025  Score=55.75  Aligned_cols=159  Identities=14%  Similarity=0.141  Sum_probs=96.8

Q ss_pred             CcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecC----------CCeEEEEECCCceEEEeeeeCCeEEEEEe
Q psy8891          19 RTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHF----------DKKVRFWDFRAEEKVRDIELHGKITSLDL   85 (203)
Q Consensus        19 ~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~----------D~~i~vwd~~~~~~~~~~~~~~~v~~~~~   85 (203)
                      ++|.+.|..+.+.+.   .+..+.. + ++|+++.|+.+..          +..|.+||+.+.+.+.++.........  
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--
Confidence            899999998866432   2223332 3 7899987766654          789999999999988877643221100  


Q ss_pred             cCCCceEEEecCCceEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEE--
Q psy8891          86 SKGTETKFAGSSCNDLVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQ--  161 (203)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--  161 (203)
                              . ........++|||++|+....  +..|.+.|+.+++.+.++...........++..+......+....  
T Consensus       103 --------~-~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~  173 (352)
T TIGR02658       103 --------V-GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVG  173 (352)
T ss_pred             --------c-cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEE
Confidence                    0 001112456788888887663  689999999999998888776543333333333333222221110  


Q ss_pred             -----------eee---------EEEEEEc-CCCEEEEecCCCcEEEEeCC
Q psy8891         162 -----------CDF---------TRAVFVV-DDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       162 -----------~~~---------~~~~~~~-~~~~l~s~s~d~~v~~wd~~  191 (203)
                                 ..+         .+-.|.+ ++++++...+ |+|.+-|+.
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~  223 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLS  223 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecC
Confidence                       000         1112344 6777766665 999999953

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280|consensus

Probab=98.48  E-value=7.4e-07  Score=66.43  Aligned_cols=86  Identities=24%  Similarity=0.382  Sum_probs=61.2

Q ss_pred             eEEc-CCCCEEEEEeCCCcEEEEeCCCCCe-EEe-----cCcCceEEEEeCCCCEEEEecCCCeEEEEECCC-ceEEEee
Q psy8891           3 AKFL-GDPTKVVSGSCDRTLKIWDLRSTET-KFA-----GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDI   74 (203)
Q Consensus         3 ~~~~-~~~~~l~t~s~D~~v~lwdl~~~~~-~~~-----~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~-~~~~~~~   74 (203)
                      +.|+ .+...++|||.|+.+..||++.+.. ...     ......+...+|.+.++++|+.|-+|++||.|. ++++..-
T Consensus       171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~  250 (339)
T KOG0280|consen  171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA  250 (339)
T ss_pred             eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC
Confidence            3454 3557899999999999999995332 222     112223334456778999999999999999994 5666655


Q ss_pred             eeCCeEEEEEecCC
Q psy8891          75 ELHGKITSLDLSKG   88 (203)
Q Consensus        75 ~~~~~v~~~~~~~~   88 (203)
                      ...|.|..+..+|.
T Consensus       251 ~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  251 KVGGGVWRIKHHPE  264 (339)
T ss_pred             ccccceEEEEecch
Confidence            55678888888774

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.46  E-value=2.7e-05  Score=57.80  Aligned_cols=174  Identities=18%  Similarity=0.154  Sum_probs=102.8

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee-eeCCeEE
Q psy8891           6 LGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-ELHGKIT   81 (203)
Q Consensus         6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~-~~~~~v~   81 (203)
                      .+++..++.++.++.+..||..+++..  ...... ....  ...++.++.+..|+.+..+|..+++.+... ....+..
T Consensus        33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             EEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--eecccccccccceeeeEecccCCcceeeeecccccccc
Confidence            346778888899999999999887653  111111 1111  123457777778889999999999987763 2211000


Q ss_pred             EEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceE------------EEEEecCCc
Q psy8891          82 SLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKI------------TSLDLSKGK  149 (203)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v------------~~~~~~~~~  149 (203)
                      .  ....             ......+..++.+..++.|..+|+++|+.+.........            ..+.+..+ 
T Consensus       111 ~--~~~~-------------~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (238)
T PF13360_consen  111 G--VRSS-------------SSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-  174 (238)
T ss_dssp             S--TB---------------SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-
T ss_pred             c--cccc-------------cCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-
Confidence            0  0000             001112457778888999999999999887776653211            12222323 


Q ss_pred             EEEEee-cCe--eE---------EeeeE--EEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         150 YYFVFA-EGF--KV---------QCDFT--RAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       150 ~~~~~~-~~~--~~---------~~~~~--~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      .+++.. .+.  .+         .....  .....+++..|+.++.++.|..||+++|+.+=
T Consensus       175 ~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  175 RVYVSSGDGRVVAVDLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEEECCTSSEEEEETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            333222 221  00         00100  11144678888888899999999999998763

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.45  E-value=4.3e-05  Score=61.72  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=65.9

Q ss_pred             ceEEcCCCCEEE-EEeCCC--cEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecC-CC--eEEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVV-SGSCDR--TLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHF-DK--KVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~-t~s~D~--~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~-D~--~i~vwd~~~~~~~~~   73 (203)
                      +.+|+||++.|+ +.+.++  .|.+||+.++....  ..........|+++++.|+..+. ++  .|.++|+..++.. .
T Consensus       238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~  316 (417)
T TIGR02800       238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R  316 (417)
T ss_pred             ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence            468999999775 555554  58888987754321  11111223467889987765543 33  5777777655432 1


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC---eEEEEECCCCc
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAEE  129 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~i~iWd~~~~~  129 (203)
                      +..++                  .......|+|+|+.|+.++.+.   .|.+||+.++.
T Consensus       317 l~~~~------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       317 LTFRG------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             eecCC------------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            21111                  0111245788888888887775   78889987654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190|consensus

Probab=98.45  E-value=1.4e-06  Score=70.36  Aligned_cols=154  Identities=18%  Similarity=0.254  Sum_probs=91.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCC-------CeEEecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRST-------ETKFAGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~-------~~~~~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      .+...++++|.|++||+|.++..       .+.+...   ....-+.+-.+-+.++|  .|+-|.+||---+..+..+..
T Consensus       745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~d  822 (1034)
T KOG4190|consen  745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMED  822 (1034)
T ss_pred             ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhc
Confidence            36677999999999999998641       1222211   22222344455567776  589999999755544332211


Q ss_pred             ---CCe---EEEEEecCCCceEEEecCCceEEEEcCCCCE-EEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCc
Q psy8891          77 ---HGK---ITSLDLSKGTETKFAGSSCNDLVTYDGAGTT-IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGK  149 (203)
Q Consensus        77 ---~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~  149 (203)
                         ++.   |.++.-                    -+..+ ++-++...+|+++|.|..+-..++..-.       .+..
T Consensus       823 apk~~a~~~ikcl~n--------------------v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn-------a~~P  875 (1034)
T KOG4190|consen  823 APKEGAGGNIKCLEN--------------------VDRHILIAGCSAESTVKLFDARSCEWTCELKVCN-------APGP  875 (1034)
T ss_pred             CcccCCCceeEeccc--------------------CcchheeeeccchhhheeeecccccceeeEEecc-------CCCC
Confidence               111   222211                    02223 4445788999999999866443332110       0000


Q ss_pred             EEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         150 YYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .           ....+.+..+.|+.++.+-..|++.+.|.++|+++...+
T Consensus       876 n-----------a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  876 N-----------ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             c-----------hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            0           001123344678899999999999999999999887654

>KOG1240|consensus

Probab=98.45  E-value=7e-06  Score=71.65  Aligned_cols=159  Identities=13%  Similarity=0.217  Sum_probs=102.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-----------ec-CcCceEEEEe-CCCC-EEEEecCCCeEEEEECCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-----------AG-SSCNDLVTYD-GAGT-TIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-----------~~-~~~~~~~~~~-~~~~-~l~s~~~D~~i~vwd~~~   67 (203)
                      ++...+.+..+|.|+.||.|++.++...+...           .. ......-++. .... .|+.+-.-+.|-.||++.
T Consensus      1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred             EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence            46667889999999999999999987522110           00 1111111221 1223 666667778899999988


Q ss_pred             ceEEEeee---eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce--EEE
Q psy8891          68 EEKVRDIE---LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK--ITS  142 (203)
Q Consensus        68 ~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~--v~~  142 (203)
                      ....+.++   .||.|++++..+                   .+.+++.|+..|.+-+||+|-+.++.....+.+  +.-
T Consensus      1183 ~~~~w~lk~~~~hG~vTSi~idp-------------------~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~ 1243 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDP-------------------WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRH 1243 (1431)
T ss_pred             hhhHHhhhcCccccceeEEEecC-------------------CceEEEEecCCceEEEEEeecCceeecccCcccCCcce
Confidence            76554443   357777776655                   445899999999999999998888776654422  221


Q ss_pred             EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec--CCCcEEEEeCCCceeeeeec
Q psy8891         143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS--IDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +.+.+                     +-++....++++  ..+.|-+|++.+|.+..++.
T Consensus      1244 v~~~~---------------------~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1244 VWLCP---------------------TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred             EEeec---------------------cCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence            11111                     112234444443  58889999999998877764

>KOG2315|consensus

Probab=98.43  E-value=6.2e-06  Score=66.38  Aligned_cols=105  Identities=11%  Similarity=0.282  Sum_probs=77.8

Q ss_pred             ceEEcCCCCEEE--EEeCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCC---CeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVV--SGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFD---KKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~--t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~i~vwd~~~~~~~~~~~~   76 (203)
                      ++.|+|+++.++  -|=.=.++-++|++.......+..+...+.|+|.|++++-+|.+   |.|-|||+...+++..+..
T Consensus       275 dv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a  354 (566)
T KOG2315|consen  275 DVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA  354 (566)
T ss_pred             EEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc
Confidence            688999997654  35556789999998755444444445567899999999888865   7999999988766644432


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC------CCeEEEEECC
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF------DKKVRFWDFR  126 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------d~~i~iWd~~  126 (203)
                      .                    ..++..|+|||.+++|+..      |+.++||+..
T Consensus       355 ~--------------------~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  355 A--------------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             C--------------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            1                    1234678889999988876      7899999976

>KOG2315|consensus

Probab=98.42  E-value=3.4e-05  Score=62.22  Aligned_cols=154  Identities=14%  Similarity=0.270  Sum_probs=98.5

Q ss_pred             EeCCCcEEEEeCCCCC--------eEEecCcCceEEEEeCCCC---EEEEecCC---------CeEEEEECCCceEEEee
Q psy8891          15 GSCDRTLKIWDLRSTE--------TKFAGSSCNDLVTYDGAGT---TIISGHFD---------KKVRFWDFRAEEKVRDI   74 (203)
Q Consensus        15 ~s~D~~v~lwdl~~~~--------~~~~~~~~~~~~~~~~~~~---~l~s~~~D---------~~i~vwd~~~~~~~~~~   74 (203)
                      .|.=+.||+|......        ..+....+  ...|.+-+.   .|++...|         .++.+.+++...+...+
T Consensus       190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv--qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L  267 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKV--QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL  267 (566)
T ss_pred             CCCCcEEEEeccccccccchhhhcccccccee--EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence            5666778999876211        11111111  123444333   33444444         37888888866666667


Q ss_pred             eeCCeEEEEEecCCCceEEE--ec----------CCc----------eEEEEcCCCCEEEEeeCC---CeEEEEECCCCc
Q psy8891          75 ELHGKITSLDLSKGTETKFA--GS----------SCN----------DLVTYDGAGTTIISGHFD---KKVRFWDFRAEE  129 (203)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~--~~----------~~~----------~~~~~~~~~~~l~s~s~d---~~i~iWd~~~~~  129 (203)
                      ...++|.++.|++.+.-+.+  |.          .|.          ..+.|+|.|++|+-++.+   |.|.+||+.+.+
T Consensus       268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K  347 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK  347 (566)
T ss_pred             CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence            77799999999998754321  11          111          235789999999999997   599999999877


Q ss_pred             eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC------CCcEEEEeCCCceee
Q psy8891         130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI------DGNIYVWDCNTEQVE  196 (203)
Q Consensus       130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------d~~v~~wd~~~~~~~  196 (203)
                      ++..+....                         -+-..++|||++|+|+..      |..++||+.. |.++
T Consensus       348 ~i~~~~a~~-------------------------tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l  394 (566)
T KOG2315|consen  348 LIAKFKAAN-------------------------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLL  394 (566)
T ss_pred             hccccccCC-------------------------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Ccee
Confidence            665554321                         122345689999888764      7899999976 4443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.40  E-value=0.00054  Score=54.13  Aligned_cols=175  Identities=13%  Similarity=0.181  Sum_probs=97.0

Q ss_pred             eEEcCCCCEEEEEeC-CCcEEEEeCCCC-CeE-----Ee----c-------CcCceEEEEeCCCCEEEEecC-CCeEEEE
Q psy8891           3 AKFLGDPTKVVSGSC-DRTLKIWDLRST-ETK-----FA----G-------SSCNDLVTYDGAGTTIISGHF-DKKVRFW   63 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~-D~~v~lwdl~~~-~~~-----~~----~-------~~~~~~~~~~~~~~~l~s~~~-D~~i~vw   63 (203)
                      ++++|++++|+.+.. +++|.++++... ...     ..    +       ..+...+.++|++++|+.... ...|.+|
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            567899999999885 999999999762 211     10    0       111234678899998877643 3489999


Q ss_pred             ECCCce--EE--Eeee--eCCeEEEEEecCCCceEEEec-CCc---------------------------------eEEE
Q psy8891          64 DFRAEE--KV--RDIE--LHGKITSLDLSKGTETKFAGS-SCN---------------------------------DLVT  103 (203)
Q Consensus        64 d~~~~~--~~--~~~~--~~~~v~~~~~~~~~~~~~~~~-~~~---------------------------------~~~~  103 (203)
                      ++....  ..  ..+.  .....+.+.|+|++..++... ..+                                 .-+.
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  251 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA  251 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence            997654  21  2222  223456677777665543221 111                                 1244


Q ss_pred             EcCCCCEEEEeeC-CCeEEEEECC--CCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec
Q psy8891         104 YDGAGTTIISGHF-DKKVRFWDFR--AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS  180 (203)
Q Consensus       104 ~~~~~~~l~s~s~-d~~i~iWd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  180 (203)
                      ++|+|++|+.+.. ..+|.++++.  +++. ..+.      .+...          +.    ......++|++++|+.+.
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~------~~~~~----------G~----~Pr~~~~s~~g~~l~Va~  310 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQ------TVPTG----------GK----FPRHFAFSPDGRYLYVAN  310 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEE------EEEES----------SS----SEEEEEE-TTSSEEEEEE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCce-EEEE------EEeCC----------CC----CccEEEEeCCCCEEEEEe
Confidence            6667766666553 3466777663  2222 1110      00000          00    123455678999988776


Q ss_pred             -CCCcEEEEeC--CCceeeee
Q psy8891         181 -IDGNIYVWDC--NTEQVEAV  198 (203)
Q Consensus       181 -~d~~v~~wd~--~~~~~~~~  198 (203)
                       .++.|.+|+.  ++|++..+
T Consensus       311 ~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  311 QDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             TTTTEEEEEEEETTTTEEEEE
T ss_pred             cCCCeEEEEEEeCCCCcEEEe
Confidence             5678999865  57776654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.38  E-value=0.00015  Score=54.21  Aligned_cols=189  Identities=12%  Similarity=0.157  Sum_probs=95.0

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecC---------cCc-eEEEEeCC-----CCEEEEecCCCeEEEEECCC
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS---------SCN-DLVTYDGA-----GTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~---------~~~-~~~~~~~~-----~~~l~s~~~D~~i~vwd~~~   67 (203)
                      ++||||+..||.+...|+|+++|+...+...-.+         ... .+++....     ...|+.-..+|.++=|-+..
T Consensus        49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~  128 (282)
T PF15492_consen   49 LAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV  128 (282)
T ss_pred             EEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence            6899999999999999999999998644321100         000 11122111     23566667787777665422


Q ss_pred             c-----eEEEeeee----CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE--ec
Q psy8891          68 E-----EKVRDIEL----HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI--EL  136 (203)
Q Consensus        68 ~-----~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~--~~  136 (203)
                      +     +..+++..    ...|.++.+++....++.+.....        +--.+.+.+.=+.-|-+-++.+--..  ..
T Consensus       129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~--------~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~  200 (282)
T PF15492_consen  129 GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN--------QDGMSKASSCGLTAWRILSDSPYYKQVTSS  200 (282)
T ss_pred             ccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC--------CCccccccccCceEEEEcCCCCcEEEcccc
Confidence            1     22233222    134555555555444333221100        00001111223555666555442211  11


Q ss_pred             cceEEEEEecCCcEEEE-----eecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         137 HGKITSLDLSKGKYYFV-----FAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       137 ~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ...+....-..+...+.     ...+ ..+..+-++.++||+..|++...+|.|.+|++-.-++.+..+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~fs~~~-~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  201 EDDITASSKRRGLLRIPSFKFFSRQG-QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             Cccccccccccceeeccceeeeeccc-cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            11111100000000000     0000 011234567789999999999999999999988776666554

>KOG3914|consensus

Probab=98.38  E-value=3.3e-06  Score=65.29  Aligned_cols=77  Identities=22%  Similarity=0.365  Sum_probs=53.2

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEECCCceEEEee-eeCCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC
Q psy8891          41 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-ELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK  118 (203)
Q Consensus        41 ~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~-~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  118 (203)
                      -++++||+++++++..|..|||-.....-.+..+ -+|.. |..+++-                    +++.|+|+|.|+
T Consensus       156 dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--------------------~~~~LlS~sGD~  215 (390)
T KOG3914|consen  156 DVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--------------------DNYLLLSGSGDK  215 (390)
T ss_pred             eeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--------------------cCceeeecCCCC
Confidence            4678999999999999999999765433222111 11211 3333322                    234689999999


Q ss_pred             eEEEEECCCCceEEEEecc
Q psy8891         119 KVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~~~~~  137 (203)
                      +|++||+++|+.++.+.+.
T Consensus       216 tlr~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  216 TLRLWDITSGKLLDTCDLS  234 (390)
T ss_pred             cEEEEecccCCcccccchh
Confidence            9999999999988766543

>KOG1334|consensus

Probab=98.38  E-value=1.4e-06  Score=69.01  Aligned_cols=160  Identities=20%  Similarity=0.207  Sum_probs=102.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCe--EEec--CcC---ce--EEEEeC-CCCEEEEecCCCeEEEEECCCceEE------Ee
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTET--KFAG--SSC---ND--LVTYDG-AGTTIISGHFDKKVRFWDFRAEEKV------RD   73 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~--~~~~--~~~---~~--~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~------~~   73 (203)
                      ..|+|++.|+.++-.|++....  .+..  ...   +.  .++..| +.+.+++++.|..+|+||.+.-...      ..
T Consensus       246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~  325 (559)
T KOG1334|consen  246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK  325 (559)
T ss_pred             CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence            5689999999999999986332  1111  111   11  133444 4458999999999999998643221      11


Q ss_pred             ee-------eCCeEEEEEecCCCceEEEecCCc---------------------------------------eEEEEcCC
Q psy8891          74 IE-------LHGKITSLDLSKGTETKFAGSSCN---------------------------------------DLVTYDGA  107 (203)
Q Consensus        74 ~~-------~~~~v~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~  107 (203)
                      +-       .+..|+++.++.++.-+++.....                                       .+--|.|.
T Consensus       326 f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr  405 (559)
T KOG1334|consen  326 FCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR  405 (559)
T ss_pred             cCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc
Confidence            11       123577777774443332211111                                       12346777


Q ss_pred             CCEEEEeeCCCeEEEEECCCCceEEEEeccce-EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEE
Q psy8891         108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIY  186 (203)
Q Consensus       108 ~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~  186 (203)
                      ..++++||.=|.|.||+-.+++.++-++.... |+++..+                        |--..|+|++.|.-|+
T Consensus       406 sEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH------------------------P~~PvLAsSGid~DVK  461 (559)
T KOG1334|consen  406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH------------------------PHLPVLASSGIDHDVK  461 (559)
T ss_pred             cceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC------------------------CCCchhhccCCcccee
Confidence            88999999999999999888887766554432 4444433                        2334799999999999


Q ss_pred             EEeCCCc
Q psy8891         187 VWDCNTE  193 (203)
Q Consensus       187 ~wd~~~~  193 (203)
                      ||-.-+.
T Consensus       462 IWTP~~~  468 (559)
T KOG1334|consen  462 IWTPLTA  468 (559)
T ss_pred             eecCCcc
Confidence            9987433

>KOG1354|consensus

Probab=98.37  E-value=4.9e-06  Score=63.48  Aligned_cols=175  Identities=18%  Similarity=0.287  Sum_probs=99.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcC--------ceEEEEeC-CCCEEEEecCCCeEEEEECCCce
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSC--------NDLVTYDG-AGTTIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~--------~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~   69 (203)
                      ++.+..|.+.++|+ .|=.|.||+++-....+   ..-+.        ....-|.| ..+.++-.+.-|+||+-|+|+..
T Consensus       169 SIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a  247 (433)
T KOG1354|consen  169 SISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA  247 (433)
T ss_pred             eeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence            56677888888877 57899999997422111   00000        01122344 44678888899999999998653


Q ss_pred             E-E---EeeeeCCeEEEEEecCCCceEEEe-cCCceEEEEcCCCCEEEEeeCCCeEEEEECC-CCceEEEEeccceEEE-
Q psy8891          70 K-V---RDIELHGKITSLDLSKGTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFR-AEEKVRDIELHGKITS-  142 (203)
Q Consensus        70 ~-~---~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~-~~~~~~~~~~~~~v~~-  142 (203)
                      . .   +.++...       .|.....+.+ -....-+.|++.|+++++=.+ -+|++||+. ..+++...+++....+ 
T Consensus       248 LCd~hsKlfEepe-------dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k  319 (433)
T KOG1354|consen  248 LCDAHSKLFEEPE-------DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK  319 (433)
T ss_pred             hhcchhhhhcccc-------CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence            2 1   1111110       0000000000 001112568889999997765 599999994 5566777666543211 


Q ss_pred             -EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee
Q psy8891         143 -LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       143 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~  195 (203)
                       .++-.+..++          +--.++++.++.+++|||....+++++...|..
T Consensus       320 Lc~lYEnD~If----------dKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  320 LCSLYENDAIF----------DKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             HHHHhhccchh----------heeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence             0111111111          111355667788999999999999999665543

>KOG1354|consensus

Probab=98.37  E-value=6e-05  Score=57.73  Aligned_cols=67  Identities=12%  Similarity=0.264  Sum_probs=43.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCC---CCeE----EecCcC-------------ceEEEEeC--CCCEEEEecCCCe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETK----FAGSSC-------------NDLVTYDG--AGTTIISGHFDKK   59 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~---~~~~----~~~~~~-------------~~~~~~~~--~~~~l~s~~~D~~   59 (203)
                      +|-|...|.+|+||..+|.|-++.-..   ++..    +..+.+             ..-+.|-+  +...++....|++
T Consensus        30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkt  109 (433)
T KOG1354|consen   30 AVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKT  109 (433)
T ss_pred             eEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcc
Confidence            577899999999999999999985432   1111    111100             01133433  3346666789999


Q ss_pred             EEEEECCCc
Q psy8891          60 VRFWDFRAE   68 (203)
Q Consensus        60 i~vwd~~~~   68 (203)
                      ||+|.++..
T Consensus       110 iKlWKi~er  118 (433)
T KOG1354|consen  110 IKLWKIRER  118 (433)
T ss_pred             eeeeeeecc
Confidence            999998654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.35  E-value=7.7e-05  Score=59.53  Aligned_cols=148  Identities=20%  Similarity=0.159  Sum_probs=91.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEE
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETKF--AGSSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLD   84 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~   84 (203)
                      .+..++.++.++.|..+|..+++..-  ..... .....  .++..++.++.|+.+..+|..+++.++.....+.+.+  
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~--  139 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLS--  139 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeec--
Confidence            46678899999999999988776431  11111 11111  2456888889999999999999988766544333211  


Q ss_pred             ecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeee
Q psy8891          85 LSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDF  164 (203)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  164 (203)
                       .|             ++    .+..++.++.++.+..||.++|+.+.++............. .               
T Consensus       140 -~p-------------~v----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~-s---------------  185 (377)
T TIGR03300       140 -PP-------------LV----ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSA-S---------------  185 (377)
T ss_pred             -CC-------------EE----ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCC-C---------------
Confidence             00             00    12356667789999999999998877765443211100000 0               


Q ss_pred             EEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         165 TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       165 ~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                        ...  .+..++.+..++.+..+|+++|+.+-
T Consensus       186 --p~~--~~~~v~~~~~~g~v~ald~~tG~~~W  214 (377)
T TIGR03300       186 --PVI--ADGGVLVGFAGGKLVALDLQTGQPLW  214 (377)
T ss_pred             --CEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence              000  12456677778888888888887653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.32  E-value=1e-06  Score=46.20  Aligned_cols=24  Identities=33%  Similarity=0.637  Sum_probs=19.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWD   25 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwd   25 (203)
                      +++|+|++..|+|||.|++|++||
T Consensus        16 ~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   16 SIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEecccccceeeCCCCEEEEEC
Confidence            677888888888888888888886

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.29  E-value=5.3e-06  Score=43.41  Aligned_cols=37  Identities=35%  Similarity=0.568  Sum_probs=27.9

Q ss_pred             eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEE
Q psy8891          69 EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD  124 (203)
Q Consensus        69 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd  124 (203)
                      ++++++..| +.|.+++++|                   ++..|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~-------------------~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSP-------------------DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEET-------------------TSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEec-------------------ccccceeeCCCCEEEEEC
Confidence            445566655 5677766555                   567999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.28  E-value=4.6e-06  Score=67.70  Aligned_cols=68  Identities=18%  Similarity=0.305  Sum_probs=56.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~   69 (203)
                      |++++|+.++|+.|+.||+|.+||...+..... ..-....++|.|+|..++.|+.-|.+.+||+.-..
T Consensus       264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  264 CCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            789999999999999999999999977554332 22224567899999999999999999999987554

>KOG4714|consensus

Probab=98.25  E-value=4.9e-06  Score=61.25  Aligned_cols=144  Identities=17%  Similarity=0.247  Sum_probs=80.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCe---EEec-CcCceEEEEeCCCCEEEEecC-----CCeEEEEECCCceEEEeeee-C
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTET---KFAG-SSCNDLVTYDGAGTTIISGHF-----DKKVRFWDFRAEEKVRDIEL-H   77 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~---~~~~-~~~~~~~~~~~~~~~l~s~~~-----D~~i~vwd~~~~~~~~~~~~-~   77 (203)
                      -+..++++..||.+-+.+.+....   +... ........+-..++.+.+++.     -+..++|+++..+.+..-.. .
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            346789999999999998865211   0000 000000112223445555432     23456677665543211111 1


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-eccceEEEEEecCCcEEEEeec
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-ELHGKITSLDLSKGKYYFVFAE  156 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  156 (203)
                      ..|.+++.+|.                  ..++++.|+.||.+.+||.++....... ..+                   
T Consensus       180 ~~v~~l~~hp~------------------qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-------------------  222 (319)
T KOG4714|consen  180 DAVTALCSHPA------------------QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-------------------  222 (319)
T ss_pred             ccchhhhCCcc------------------cccEEEEecCCCeEEEEEcccccchHHHHHHh-------------------
Confidence            22555555543                  2357889999999999999875321110 001                   


Q ss_pred             CeeEEeeeEEEEEEc-CCCEEEEecCCCcEEEEeCCC
Q psy8891         157 GFKVQCDFTRAVFVV-DDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       157 ~~~~~~~~~~~~~~~-~~~~l~s~s~d~~v~~wd~~~  192 (203)
                          ...+..+.|+| ++..|+++++||.+--||.++
T Consensus       223 ----k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  223 ----KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ----hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                00122344555 467899999999999999884

>KOG2066|consensus

Probab=98.17  E-value=0.00012  Score=61.61  Aligned_cols=144  Identities=19%  Similarity=0.183  Sum_probs=92.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCC-eEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecC
Q psy8891           9 PTKVVSGSCDRTLKIWDLRSTE-TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK   87 (203)
Q Consensus         9 ~~~l~t~s~D~~v~lwdl~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~   87 (203)
                      ++.++=|.-+|.|++.+..... ..+.+...      +-.|++++|||.||++-|-.+.+.+...++..+-++.+++++|
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P  122 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP  122 (846)
T ss_pred             cceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc
Confidence            5678889999999999886542 22211111      4578999999999999999999998888888888999999998


Q ss_pred             CCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC-Cc--eEEEEeccceEEEEEecCCcEEEEeecCeeEEeee
Q psy8891          88 GTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EE--KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDF  164 (203)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  164 (203)
                      +-.+              ..++++++|+.-| +-+..-+- ++  .+.-.+..+.|.++.+                   
T Consensus       123 d~~~--------------~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W-------------------  168 (846)
T KOG2066|consen  123 DFSR--------------QQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW-------------------  168 (846)
T ss_pred             chhh--------------hhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe-------------------
Confidence            6221              1245778888777 66654220 10  1100111223333222                   


Q ss_pred             EEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         165 TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       165 ~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                             .|.++|-+..+| |++||..+++.+-.++
T Consensus       169 -------~g~lIAWand~G-v~vyd~~~~~~l~~i~  196 (846)
T KOG2066|consen  169 -------RGNLIAWANDDG-VKVYDTPTRQRLTNIP  196 (846)
T ss_pred             -------cCcEEEEecCCC-cEEEeccccceeeccC
Confidence                   345566655444 8888888777776654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.17  E-value=0.00021  Score=64.19  Aligned_cols=124  Identities=15%  Similarity=0.186  Sum_probs=78.6

Q ss_pred             ceEEcCCCCE-EEEEeCCCcEEEEeCCCCCeE-Eec-C----------------------cCceEEEEeCCCCEEEEecC
Q psy8891           2 CAKFLGDPTK-VVSGSCDRTLKIWDLRSTETK-FAG-S----------------------SCNDLVTYDGAGTTIISGHF   56 (203)
Q Consensus         2 ~~~~~~~~~~-l~t~s~D~~v~lwdl~~~~~~-~~~-~----------------------~~~~~~~~~~~~~~l~s~~~   56 (203)
                      .++++|+++. .++-+.++.|++||+.++... ..+ .                      .....++++++++..++-..
T Consensus       744 GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~  823 (1057)
T PLN02919        744 GISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY  823 (1057)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC
Confidence            3678999985 456667899999999764421 110 0                      00123567788888888899


Q ss_pred             CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce
Q psy8891          57 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK  130 (203)
Q Consensus        57 D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~  130 (203)
                      ++.|++||..++.... +...+.    .-..++...........-++++++|+.+++-+.+++|++||+.+++.
T Consensus       824 N~rIrviD~~tg~v~t-iaG~G~----~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        824 NHKIKKLDPATKRVTT-LAGTGK----AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCEEEEEECCCCeEEE-EeccCC----cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            9999999998765442 222111    00011111111111222357888999888888999999999988764

>KOG1275|consensus

Probab=98.16  E-value=2.7e-05  Score=66.29  Aligned_cols=141  Identities=18%  Similarity=0.262  Sum_probs=90.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecC---------CCeEEEEECCCceEEEeeee
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHF---------DKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~---------D~~i~vwd~~~~~~~~~~~~   76 (203)
                      .+++.+++|..-|+|-+=|..+.+..... .+...+-.++-+|+.|+|||.         |..|+|||+|....+.-+..
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~  264 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF  264 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc
Confidence            47789999999999999999876654322 223445678888999999975         78899999998776544433


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC-Cce---EEEEecc-ceEEEEEecCCcEE
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEK---VRDIELH-GKITSLDLSKGKYY  151 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~~---~~~~~~~-~~v~~~~~~~~~~~  151 (203)
                      +....-+.|+|.-                  ...++.++..|...+-|... .++   .+.+... ..+.          
T Consensus       265 ~~~P~flrf~Psl------------------~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~----------  316 (1118)
T KOG1275|consen  265 PYGPQFLRFHPSL------------------TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGIS----------  316 (1118)
T ss_pred             ccCchhhhhcccc------------------cceEEEEecccceeeccccccCCCccceeEEccCCCcce----------
Confidence            2211122233311                  13567777788888888321 111   1111111 1122          


Q ss_pred             EEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         152 FVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                                    ...+++.++.++-|-.+|.|.+|-
T Consensus       317 --------------~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  317 --------------AFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             --------------eEEecCCCceEEEecccCcEeeec
Confidence                          334556788899999999999996

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.12  E-value=0.00017  Score=58.69  Aligned_cols=111  Identities=9%  Similarity=0.071  Sum_probs=65.1

Q ss_pred             ceEEcCCCCEEEEEe-CCCcEEEEeC--CC--CCe-EE-ecCcCceEEEEeCCCCEEEEecCC---CeEEEEECCCceEE
Q psy8891           2 CAKFLGDPTKVVSGS-CDRTLKIWDL--RS--TET-KF-AGSSCNDLVTYDGAGTTIISGHFD---KKVRFWDFRAEEKV   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s-~D~~v~lwdl--~~--~~~-~~-~~~~~~~~~~~~~~~~~l~s~~~D---~~i~vwd~~~~~~~   71 (203)
                      ..+|+|||+.|+..+ .++..++|.+  ..  ... .. ..........|+|+++.|+..+.+   ..|.+||+..++..
T Consensus       285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~  364 (428)
T PRK01029        285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY  364 (428)
T ss_pred             CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence            357999999877655 5777667754  32  111 11 111222345789999988766543   47899999877643


Q ss_pred             EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC---CCeEEEEECCCCceE
Q psy8891          72 RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF---DKKVRFWDFRAEEKV  131 (203)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---d~~i~iWd~~~~~~~  131 (203)
                      ........+.                   ...|+|+|+.|+..+.   ...|.+||+..++..
T Consensus       365 ~Lt~~~~~~~-------------------~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        365 QLTTSPENKE-------------------SPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             EccCCCCCcc-------------------ceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            2111111111                   1357777777664332   357888898876543

>KOG2041|consensus

Probab=98.09  E-value=0.00012  Score=61.28  Aligned_cols=125  Identities=11%  Similarity=0.154  Sum_probs=87.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--E----------------EecCcCceEEEEeCCCCEEEEecCCCeEEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET--K----------------FAGSSCNDLVTYDGAGTTIISGHFDKKVRFW   63 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~----------------~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vw   63 (203)
                      |+.|..+..++++|+.||.+|+-.+.+...  .                ..+...+..+.|.-+.+.|-|...+|-|-||
T Consensus        19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVW   98 (1189)
T KOG2041|consen   19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVW   98 (1189)
T ss_pred             EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEE
Confidence            788999999999999999999998865221  0                0111223456787777899999999999999


Q ss_pred             ECCCceEEEe---eeeCCeEEEEEecCCCceEEEecCCc----------------------eEEEEcCCCCEEEEeeCCC
Q psy8891          64 DFRAEEKVRD---IELHGKITSLDLSKGTETKFAGSSCN----------------------DLVTYDGAGTTIISGHFDK  118 (203)
Q Consensus        64 d~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~s~s~d~  118 (203)
                      =+-.+.-.-+   .+..+-|.++.++.++..+......+                      ..+.|++|.++++.+-..+
T Consensus        99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ang  178 (1189)
T KOG2041|consen   99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANG  178 (1189)
T ss_pred             eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCC
Confidence            9876642111   12234578888888777654321111                      1256888888888888889


Q ss_pred             eEEEEECC
Q psy8891         119 KVRFWDFR  126 (203)
Q Consensus       119 ~i~iWd~~  126 (203)
                      .+.++|-.
T Consensus       179 e~hlydnq  186 (1189)
T KOG2041|consen  179 ETHLYDNQ  186 (1189)
T ss_pred             cEEEeccc
Confidence            99999864

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.09  E-value=0.00012  Score=54.28  Aligned_cols=143  Identities=17%  Similarity=0.158  Sum_probs=89.3

Q ss_pred             CCcEEEEeCCCCCeEE--ecC-cCceEEE-EeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEE
Q psy8891          18 DRTLKIWDLRSTETKF--AGS-SCNDLVT-YDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKF   93 (203)
Q Consensus        18 D~~v~lwdl~~~~~~~--~~~-~~~~~~~-~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (203)
                      +++|..||+.+++..-  ... .....+. ..++++.++.++.++.+..||..+++.+......+.+...       .. 
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-------~~-   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-------PV-   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-------EE-
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-------ee-
Confidence            6889999998776431  111 1122221 2235668888899999999999999987766543221000       00 


Q ss_pred             EecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-eccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcC
Q psy8891          94 AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-ELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVD  172 (203)
Q Consensus        94 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (203)
                                  ..+..++.++.|+.|..+|..+|+.+..+ ....+...  .                  .........
T Consensus        74 ------------~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~------------------~~~~~~~~~  121 (238)
T PF13360_consen   74 ------------VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG--V------------------RSSSSPAVD  121 (238)
T ss_dssp             ------------EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS--T------------------B--SEEEEE
T ss_pred             ------------ecccccccccceeeeEecccCCcceeeeeccccccccc--c------------------ccccCceEe
Confidence                        02335666778889999999999987774 32211000  0                  001111224


Q ss_pred             CCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         173 DDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       173 ~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ++.++.+..++.|+.+|+.+|+++-..+
T Consensus       122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~  149 (238)
T PF13360_consen  122 GDRLYVGTSSGKLVALDPKTGKLLWKYP  149 (238)
T ss_dssp             TTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred             cCEEEEEeccCcEEEEecCCCcEEEEee
Confidence            6788888889999999999999976654

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.07  E-value=0.00065  Score=55.28  Aligned_cols=92  Identities=11%  Similarity=0.114  Sum_probs=53.8

Q ss_pred             cEEEEeCCCCCe--EEecCcCceEEEEeCCCCEEEEecCC---CeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEE
Q psy8891          20 TLKIWDLRSTET--KFAGSSCNDLVTYDGAGTTIISGHFD---KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFA   94 (203)
Q Consensus        20 ~v~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~D---~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (203)
                      .|.++|......  ............|+|+++.|+..+.+   ..|.+||+.+++........+.+.             
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-------------  246 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-------------  246 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-------------
Confidence            377778776432  22222222335789999988776644   368899998775432211111111             


Q ss_pred             ecCCceEEEEcCCCCEEE-EeeCCC--eEEEEECCCCce
Q psy8891          95 GSSCNDLVTYDGAGTTII-SGHFDK--KVRFWDFRAEEK  130 (203)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~-s~s~d~--~i~iWd~~~~~~  130 (203)
                            ...|+|+|+.|+ +.+.++  .|.+||+.+++.
T Consensus       247 ------~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~  279 (430)
T PRK00178        247 ------APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL  279 (430)
T ss_pred             ------CeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence                  135777877665 444444  688889887653

>KOG4532|consensus

Probab=98.07  E-value=0.00029  Score=52.41  Aligned_cols=104  Identities=14%  Similarity=0.072  Sum_probs=68.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCCeEEecCcC---ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecC
Q psy8891          11 KVVSGSCDRTLKIWDLRSTETKFAGSSC---NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK   87 (203)
Q Consensus        11 ~l~t~s~D~~v~lwdl~~~~~~~~~~~~---~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~   87 (203)
                      .+.-+|.|.++|+.+++.....+..+.+   ...+.++++++.+++.++...|-.|.+.....-..     .+ .++-..
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~-----~~-~~a~t~  203 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE-----NI-YEAPTS  203 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee-----ee-EecccC
Confidence            4667888999999988765433222211   23467889999999999999999998865432111     00 111111


Q ss_pred             CCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891          88 GTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                      |+         +-...|+.....+|++..|+++.|||+|...
T Consensus       204 D~---------gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  204 DH---------GFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             CC---------ceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            11         1123466667789999999999999998643

>KOG4547|consensus

Probab=98.07  E-value=0.00057  Score=55.59  Aligned_cols=119  Identities=14%  Similarity=0.181  Sum_probs=83.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeE--EecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEE
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITS   82 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~   82 (203)
                      |-..++=|-..|.|-+|++..++..  +...   .....+-+..+-.++.|++.|+.+.+|+......+.......+   
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~---  145 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP---  145 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC---
Confidence            4456777888899999999876642  2212   2223333445556999999999999999988776554432211   


Q ss_pred             EEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEec
Q psy8891          83 LDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLS  146 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~  146 (203)
                                     ...-++++|||.++++++  +.|++||+.+.+.+..|+.|+ .+..+++.
T Consensus       146 ---------------~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~  193 (541)
T KOG4547|consen  146 ---------------LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFT  193 (541)
T ss_pred             ---------------ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence                           111256778888999886  689999999999999998874 46666553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.00047  Score=56.47  Aligned_cols=92  Identities=11%  Similarity=0.087  Sum_probs=52.2

Q ss_pred             cEEEEeCCCCCe--EEecCcCceEEEEeCCCCEEEEecCC---CeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEE
Q psy8891          20 TLKIWDLRSTET--KFAGSSCNDLVTYDGAGTTIISGHFD---KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFA   94 (203)
Q Consensus        20 ~v~lwdl~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~D---~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (203)
                      .+.++|......  ............|+|+++.|+..+.+   ..|.+||+.+++........+..              
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~--------------  264 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN--------------  264 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc--------------
Confidence            566678765432  22222222335789999988776543   26888898776542111111111              


Q ss_pred             ecCCceEEEEcCCCCEEEE-eeCCCe--EEEEECCCCce
Q psy8891          95 GSSCNDLVTYDGAGTTIIS-GHFDKK--VRFWDFRAEEK  130 (203)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~s-~s~d~~--i~iWd~~~~~~  130 (203)
                           ....|+|||+.|+. .+.++.  |.++|+.+++.
T Consensus       265 -----~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~  298 (448)
T PRK04792        265 -----GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL  298 (448)
T ss_pred             -----CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence                 12357788876654 455564  77778876653

>KOG1064|consensus

Probab=98.02  E-value=4.7e-05  Score=69.21  Aligned_cols=135  Identities=16%  Similarity=0.260  Sum_probs=80.3

Q ss_pred             CCCCEEEEecCCCeEEEEECCCceEEEeeeeCC--eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEE
Q psy8891          46 GAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFW  123 (203)
Q Consensus        46 ~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iW  123 (203)
                      |...+-+||+.||.+++|....++.+..++..+  .|+.+.                   |+.+|+....+..||.+.+|
T Consensus      2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~-------------------f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR-------------------FNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh-------------------hcccCCceeeeccCCceeec
Confidence            445688999999999999988877665554322  233332                   34455566666777888888


Q ss_pred             ECCCCceEEEEeccce-------EEEEEe-----cCCcEEEEeec-----C----eeEEeeeEEEEEEcCCCEEEEecCC
Q psy8891         124 DFRAEEKVRDIELHGK-------ITSLDL-----SKGKYYFVFAE-----G----FKVQCDFTRAVFVVDDDYVAVGSID  182 (203)
Q Consensus       124 d~~~~~~~~~~~~~~~-------v~~~~~-----~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~l~s~s~d  182 (203)
                      ... ..+....+-|.+       +.++-.     +.++..-....     .    .-+....+++++.|+-+.|+||+.+
T Consensus      2279 q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             ccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence            764 222111111111       001100     00111000000     0    0011235678899999999999999


Q ss_pred             CcEEEEeCCCceeeeeec
Q psy8891         183 GNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       183 ~~v~~wd~~~~~~~~~~~  200 (203)
                      |.|.+||+++.+++++++
T Consensus      2358 G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             CcEEEeehHHHHHHHHhh
Confidence            999999999999988775

>KOG0882|consensus

Probab=97.96  E-value=0.00036  Score=55.39  Aligned_cols=193  Identities=20%  Similarity=0.173  Sum_probs=106.3

Q ss_pred             eEEcCCCCEEEEEeC-CCcEEEEeCCCCCe----EEe-cCcCceEEEEeCC-C--CEEEEecCCCeEEEEECCCceEEE-
Q psy8891           3 AKFLGDPTKVVSGSC-DRTLKIWDLRSTET----KFA-GSSCNDLVTYDGA-G--TTIISGHFDKKVRFWDFRAEEKVR-   72 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~-D~~v~lwdl~~~~~----~~~-~~~~~~~~~~~~~-~--~~l~s~~~D~~i~vwd~~~~~~~~-   72 (203)
                      ++.+.++..+.|.+. |..+|++|++....    +.. .+....++ ..+. .  ..-++.-.++.|.|+|-+...+.. 
T Consensus        59 l~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~  137 (558)
T KOG0882|consen   59 LAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG  137 (558)
T ss_pred             hhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccc
Confidence            344678888899777 99999999976221    111 11111111 1221 1  233444567899999965433111 


Q ss_pred             -eeeeC-CeEEEEEecC-------------------CC---------------ceEEEec-C---CceEEEEcCCCCEEE
Q psy8891          73 -DIELH-GKITSLDLSK-------------------GT---------------ETKFAGS-S---CNDLVTYDGAGTTII  112 (203)
Q Consensus        73 -~~~~~-~~v~~~~~~~-------------------~~---------------~~~~~~~-~---~~~~~~~~~~~~~l~  112 (203)
                       .-..| .+|..+-..+                   .+               ++.+.+. .   .....+|+|+|..+.
T Consensus       138 ~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis  217 (558)
T KOG0882|consen  138 YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS  217 (558)
T ss_pred             eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccc
Confidence             00111 1222222211                   11               1111111 1   123478999999999


Q ss_pred             EeeCCCeEEEEECCCCceEEEEeccc-----e------EEEEEecCCcEEEEeec-CeeEEeeeEEEEEEcCCCEEEEec
Q psy8891         113 SGHFDKKVRFWDFRAEEKVRDIELHG-----K------ITSLDLSKGKYYFVFAE-GFKVQCDFTRAVFVVDDDYVAVGS  180 (203)
Q Consensus       113 s~s~d~~i~iWd~~~~~~~~~~~~~~-----~------v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s  180 (203)
                      +-+.|++||+++.+++..++++....     +      +..+.+...  +.+..+ ...-....+.++|...+.+|+.|+
T Consensus       218 tl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRR--maverelek~~~~~~~~~~fdes~~flly~t  295 (558)
T KOG0882|consen  218 TLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRR--MAVERELEKHGSTVGTNAVFDESGNFLLYGT  295 (558)
T ss_pred             ccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhh--hhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence            99999999999999998776654221     1      111111100  000000 001112345677888889999988


Q ss_pred             CCCcEEEEeCCCceeeeee
Q psy8891         181 IDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       181 ~d~~v~~wd~~~~~~~~~~  199 (203)
                      .=| |++.++.++.+.+++
T Consensus       296 ~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  296 ILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             cee-EEEEEeecCeEEEEe
Confidence            766 899999999998887

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.96  E-value=0.0048  Score=48.03  Aligned_cols=24  Identities=21%  Similarity=0.410  Sum_probs=17.4

Q ss_pred             EecCCCcEEEEeCCCceeeeeecc
Q psy8891         178 VGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       178 s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      ....++.+.+||..+|++++++++
T Consensus       307 ~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EETTTTEEEEEETTT--EEEEE--
T ss_pred             EcCCCCeEEEEeCcCCcEEeehhc
Confidence            345689999999999999999874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.93  E-value=0.0037  Score=50.74  Aligned_cols=110  Identities=9%  Similarity=0.048  Sum_probs=63.1

Q ss_pred             ceEEcCCCCE-EEEEeCC---CcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEE-EEecCC--CeEEEEECCCceEEE
Q psy8891           2 CAKFLGDPTK-VVSGSCD---RTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTI-ISGHFD--KKVRFWDFRAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~~~~-l~t~s~D---~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l-~s~~~D--~~i~vwd~~~~~~~~   72 (203)
                      .-+|+|||+. ++..+.+   ..|.++|+.+++...  ..........|+||++.| ++.+.+  ..|.++|+..++.. 
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-  270 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-  270 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-
Confidence            4579999985 6644443   568888998766432  222223345689999755 444444  46777787666532 


Q ss_pred             eeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC-C--eEEEEECCCCce
Q psy8891          73 DIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD-K--KVRFWDFRAEEK  130 (203)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-~--~i~iWd~~~~~~  130 (203)
                      .+.....+                  .....|+|||+.|+-.+.. +  .|.+.|+.+++.
T Consensus       271 ~LT~~~~~------------------d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        271 QITNYPGI------------------DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             EcccCCCc------------------cCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            22211110                  0012478888776666532 2  566677776654

>KOG4714|consensus

Probab=97.92  E-value=0.00014  Score=53.79  Aligned_cols=127  Identities=15%  Similarity=0.131  Sum_probs=68.6

Q ss_pred             EEEeC-CCCEEEEecCCCeEEEEECCCceEE-Eeeee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC
Q psy8891          42 VTYDG-AGTTIISGHFDKKVRFWDFRAEEKV-RDIEL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK  118 (203)
Q Consensus        42 ~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  118 (203)
                      ++..| +.+.+++|+.||.+-+||.+..... ..+.. ..++..+-|+|.                  ++..|++++.||
T Consensus       185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk------------------~p~~Lft~sedG  246 (319)
T KOG4714|consen  185 LCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK------------------NPEHLFTCSEDG  246 (319)
T ss_pred             hhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC------------------CchheeEecCCC
Confidence            33344 4557888899999999999876432 12222 245667777763                  234788899999


Q ss_pred             eEEEEECCCCceEEEEeccc-eEEEEEe-cCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         119 KVRFWDFRAEEKVRDIELHG-KITSLDL-SKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~~~~~~-~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      .+-.||-.+ ..+. +..+. .+.++-- .+.+..+ .-++........-..|..-|..|++|+.-+-|++++
T Consensus       247 slw~wdas~-~~l~-i~~~~s~~s~WLsgD~v~s~i-~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  247 SLWHWDAST-TFLS-ISNQASVISSWLSGDPVKSRI-EITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cEEEEcCCC-ceEE-ecCccccccccccCCcccceE-eeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            999998653 2221 11111 0111000 0000000 000011011111233555688999999999999875

>KOG1409|consensus

Probab=97.85  E-value=0.0018  Score=49.92  Aligned_cols=170  Identities=16%  Similarity=0.276  Sum_probs=98.8

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCC--CC-----eEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRS--TE-----TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~--~~-----~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      ..+.++...|+.|=..|++.-+-+..  .+     ....++..+..+.++-..+.+++.+.|..+--.-.+.+..+....
T Consensus        74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~  153 (404)
T KOG1409|consen   74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN  153 (404)
T ss_pred             eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE
Confidence            45667778899999999998887653  11     112233334444455556788888888766544333332221110


Q ss_pred             -------------------eCCeEEEEEecCCCceEEE----ecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          76 -------------------LHGKITSLDLSKGTETKFA----GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        76 -------------------~~~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                                         ..++|..+.+.+..-..+.    +..+.....|++..+.+.++..|.++-+||+--.+ ..
T Consensus       154 ~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-g~  232 (404)
T KOG1409|consen  154 FETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-GT  232 (404)
T ss_pred             eeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-ce
Confidence                               1134555555443333322    22334456899999999999999999999986322 11


Q ss_pred             EEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         133 DIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       133 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      ..++.+...                     .+..+.+.+--+.+++++.||.|.+||.+-..
T Consensus       233 ~~el~gh~~---------------------kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  233 AYELQGHND---------------------KVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eeeeccchh---------------------hhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            222221100                     00011112234579999999999999988533

>KOG1409|consensus

Probab=97.76  E-value=0.00016  Score=55.44  Aligned_cols=66  Identities=20%  Similarity=0.421  Sum_probs=47.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC-eEEecCcC---ceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE-TKFAGSSC---NDLVTYDGAGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~-~~~~~~~~---~~~~~~~~~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      |..|.+....|++|+.|..|.+||+...+ .......+   ...+.+.+.-..|+|++.||.|-+||..-
T Consensus       202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            56788888999999999999999997532 11111111   12233444557899999999999999854

>KOG2314|consensus

Probab=97.75  E-value=0.01  Score=48.71  Aligned_cols=188  Identities=12%  Similarity=0.133  Sum_probs=105.6

Q ss_pred             eEEcCCCCEEEEEeCC-----------CcEEEEeCCCCCeE--Eec----CcCceEEEEeCCCCEEEEecCCCeEEEEEC
Q psy8891           3 AKFLGDPTKVVSGSCD-----------RTLKIWDLRSTETK--FAG----SSCNDLVTYDGAGTTIISGHFDKKVRFWDF   65 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D-----------~~v~lwdl~~~~~~--~~~----~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~   65 (203)
                      +.|||+.++|+|=|.-           ..++|||+.++..+  +..    .....+..|+.|++++|.-.. ..|.||+.
T Consensus       255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEt  333 (698)
T KOG2314|consen  255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYET  333 (698)
T ss_pred             eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEec
Confidence            5689999999986542           56899999987643  221    122356789999999988766 56889986


Q ss_pred             CCceEE--EeeeeCCeEEEEEecCCCceEEEecCC----------------------------ceEEEEcCCCCEEEEee
Q psy8891          66 RAEEKV--RDIELHGKITSLDLSKGTETKFAGSSC----------------------------NDLVTYDGAGTTIISGH  115 (203)
Q Consensus        66 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~s~s  115 (203)
                      ..-..+  +.+.. ..|..++++|....+..=..+                            .+-..|...|.+|+.--
T Consensus       334 psf~lld~Kslki-~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv  412 (698)
T KOG2314|consen  334 PSFMLLDKKSLKI-SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV  412 (698)
T ss_pred             CceeeecccccCC-ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence            554332  12222 346667777754433210000                            00134666666665321


Q ss_pred             C----------CCeEEEEECCC-CceEEEEeccceEEEEEecCCcEEEE--eecCe----eEE-----------------
Q psy8891         116 F----------DKKVRFWDFRA-EEKVRDIELHGKITSLDLSKGKYYFV--FAEGF----KVQ-----------------  161 (203)
Q Consensus       116 ~----------d~~i~iWd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~----~~~-----------------  161 (203)
                      .          =..+.|+.++. .-++..+++...+..+++.|...-+.  .....    .++                 
T Consensus       413 dR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk  492 (698)
T KOG2314|consen  413 DRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK  492 (698)
T ss_pred             EeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc
Confidence            1          11233444442 22344555555666666655433222  22111    110                 


Q ss_pred             eeeEEEEEEcCCCEEEEe---cCCCcEEEEeCCC
Q psy8891         162 CDFTRAVFVVDDDYVAVG---SIDGNIYVWDCNT  192 (203)
Q Consensus       162 ~~~~~~~~~~~~~~l~s~---s~d~~v~~wd~~~  192 (203)
                      .....+-++|.|++++.+   |..|.+.++|+.-
T Consensus       493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            112334468999987765   5689999999874

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.73  E-value=0.016  Score=46.69  Aligned_cols=190  Identities=12%  Similarity=0.088  Sum_probs=97.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeE--EecCcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEE
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGSSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLD   84 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~   84 (203)
                      ++..++.++.++.+..+|.++++..  ...... ......  .+..++.+..++.+..+|.++++.+.......+...+.
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            3456777888999999999886642  111110 000011  23467777889999999999998876654321100000


Q ss_pred             --ecC--CCceEEEecCCceEEE------------------------------EcC--CCCEEEEeeCCCeEEEEECCCC
Q psy8891          85 --LSK--GTETKFAGSSCNDLVT------------------------------YDG--AGTTIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        85 --~~~--~~~~~~~~~~~~~~~~------------------------------~~~--~~~~l~s~s~d~~i~iWd~~~~  128 (203)
                        .+|  ....++.+.....+.+                              -+|  .+..++.++.++.+...|..+|
T Consensus       197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG  276 (394)
T PRK11138        197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG  276 (394)
T ss_pred             CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence              000  0001111111111100                              011  2456777888999999999998


Q ss_pred             ceEEEEeccceEEEEEecCCcEEEEeecCeeE-------EeeeEE------EEEE--cCCCEEEEecCCCcEEEEeCCCc
Q psy8891         129 EKVRDIELHGKITSLDLSKGKYYFVFAEGFKV-------QCDFTR------AVFV--VDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       129 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~------~~~~--~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                      +.+...+.... .......+..++....+...       ...|..      ...+  ..+.+|+.++.||.++..|..+|
T Consensus       277 ~~~W~~~~~~~-~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG  355 (394)
T PRK11138        277 QIVWKREYGSV-NDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDG  355 (394)
T ss_pred             CEEEeecCCCc-cCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCC
Confidence            87655433211 11111111111111111000       000000      0001  13567888999999999999999


Q ss_pred             eeeeeec
Q psy8891         194 QVEAVLK  200 (203)
Q Consensus       194 ~~~~~~~  200 (203)
                      +.+...+
T Consensus       356 ~~~~~~~  362 (394)
T PRK11138        356 RFVAQQK  362 (394)
T ss_pred             CEEEEEE
Confidence            9887664

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.71  E-value=0.0015  Score=53.47  Aligned_cols=106  Identities=11%  Similarity=0.156  Sum_probs=67.6

Q ss_pred             ceEEcC-CCCEEEE----EeCCCcE----EEEeCCCCCeE------EecCcCceEEEEeCCCCEEEEecCCCeEEEEECC
Q psy8891           2 CAKFLG-DPTKVVS----GSCDRTL----KIWDLRSTETK------FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR   66 (203)
Q Consensus         2 ~~~~~~-~~~~l~t----~s~D~~v----~lwdl~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~   66 (203)
                      ++.||. ++..+.|    .|.+|.+    .+|++...+..      .........++++|+...|+-|..||.|.+||..
T Consensus       210 ~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~  289 (545)
T PF11768_consen  210 DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTT  289 (545)
T ss_pred             EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcC
Confidence            566765 4445543    3444543    34555433211      1122333446778899999999999999999987


Q ss_pred             CceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          67 AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      .+.....        ...+.            ...+.|+|+|.+++.|+..|.+.+||+.-
T Consensus       290 ~~~t~~~--------ka~~~------------P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  290 RGVTLLA--------KAEFI------------PTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CCeeeee--------eeccc------------ceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            6532211        11111            23467888999999999999999999864

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.68  E-value=0.019  Score=46.36  Aligned_cols=145  Identities=15%  Similarity=0.111  Sum_probs=89.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeE-EecCcCceEEEEeCCCCEEEEecCCC-eEEEEECCCceEEEeeeeCCeEEEEEe
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETK-FAGSSCNDLVTYDGAGTTIISGHFDK-KVRFWDFRAEEKVRDIELHGKITSLDL   85 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D~-~i~vwd~~~~~~~~~~~~~~~v~~~~~   85 (203)
                      +|.+++..|. |.+.+.+.-.+... ........-..+..+++-++-|-.|| .+-|+|.+.++..+....-+.|.++..
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~v  409 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKV  409 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEE
Confidence            7788888887 66666655433222 11111122234456677888888999 999999998875544433455666655


Q ss_pred             cCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe--ccceEEEEEecCCcEEEEeecCeeEEee
Q psy8891          86 SKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE--LHGKITSLDLSKGKYYFVFAEGFKVQCD  163 (203)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~  163 (203)
                      +                   ++|+.++.+.....+-+.|+.+++.. .+.  ..+-|..+.++                 
T Consensus       410 s-------------------~dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~-----------------  452 (668)
T COG4946         410 S-------------------PDGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWH-----------------  452 (668)
T ss_pred             c-------------------CCCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEEc-----------------
Confidence            5                   46667777777778888899888642 221  11224444444                 


Q ss_pred             eEEEEEEcCCCEEEEecCCC----cEEEEeCCCceeee
Q psy8891         164 FTRAVFVVDDDYVAVGSIDG----NIYVWDCNTEQVEA  197 (203)
Q Consensus       164 ~~~~~~~~~~~~l~s~s~d~----~v~~wd~~~~~~~~  197 (203)
                             |+++++|.+-.+|    .|+++|+..++...
T Consensus       453 -------~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         453 -------PNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             -------CCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence                   5556666655544    57888888766554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.65  E-value=0.00075  Score=51.34  Aligned_cols=169  Identities=17%  Similarity=0.298  Sum_probs=91.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---EEecCcC--------ceEEEEeCC-CCEEEEecCCCeEEEEECCCce
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET---KFAGSSC--------NDLVTYDGA-GTTIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~~~--------~~~~~~~~~-~~~l~s~~~D~~i~vwd~~~~~   69 (203)
                      ++.|..|.+.++++ .|=.|.+|+++-...   +...-+.        ....-+.|. .+.+.-.+..|+|++-|+|+..
T Consensus       177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            45677777777766 578899999874221   1100000        011223443 3466777888999999998653


Q ss_pred             E------EEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC-CceEEEEeccceEEE
Q psy8891          70 K------VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELHGKITS  142 (203)
Q Consensus        70 ~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~~~~~~~~~~~v~~  142 (203)
                      .      +.....++ + ..++-..      .-+...-+.|++.|++|++-++ -+|+|||++. ..|+++++++.....
T Consensus       256 lcdn~~klfe~~~D~-v-~~~ff~e------ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         256 LCDNSKKLFELTIDG-V-DVDFFEE------IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             hccCchhhhhhccCc-c-cchhHHH------HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence            2      11111110 0 0000000      0001112568889999998877 4999999985 457888876632100


Q ss_pred             --EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         143 --LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       143 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                        -++-.+..++.          --.+.|+.|++.+.+|+...+.-++-.
T Consensus       327 ~l~d~YEnDaifd----------kFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         327 ELNDVYENDAIFD----------KFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHhhhhccceee----------eEEEEecCCcccccccccccceeeecc
Confidence              00011111110          113446667777778877777777653

>KOG4532|consensus

Probab=97.63  E-value=0.0051  Score=46.00  Aligned_cols=117  Identities=15%  Similarity=0.095  Sum_probs=77.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe-E---EecCc--CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe-e
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET-K---FAGSS--CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD-I   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-~---~~~~~--~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~-~   74 (203)
                      +++.++|++++++.+....|..|.+..... .   .....  ..-...|+..+..+|++..||++.|||+|.....+. .
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            578899999999999999999999875221 1   11111  112245667778999999999999999987643221 1


Q ss_pred             e-----eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          75 E-----LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        75 ~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                      .     +.|.++..-|++.+..                .-.+++-. =+.+.+-|+|++...+.+.
T Consensus       243 sstrp~hnGa~R~c~Fsl~g~l----------------DLLf~sEh-fs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFSLYGLL----------------DLLFISEH-FSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             cccCCCCCCceEEEEecCCCcc----------------eEEEEecC-cceEEEEEcccCceeeEEe
Confidence            1     2266777777654321                11333333 3688999999887554443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.59  E-value=0.02  Score=44.06  Aligned_cols=134  Identities=17%  Similarity=0.269  Sum_probs=78.9

Q ss_pred             eEEcCCCCEEEEE-----eCCCcEEEEeCCC-CCeE--Ee--cCcCceEEEEeCCCCEEEEe------------------
Q psy8891           3 AKFLGDPTKVVSG-----SCDRTLKIWDLRS-TETK--FA--GSSCNDLVTYDGAGTTIISG------------------   54 (203)
Q Consensus         3 ~~~~~~~~~l~t~-----s~D~~v~lwdl~~-~~~~--~~--~~~~~~~~~~~~~~~~l~s~------------------   54 (203)
                      ..||+||++|+|.     +..|.|-+||... .+..  +.  +..+-+ +.+.|+++.|+.+                  
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHe-l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHE-LLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhh-EEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            4689999999985     3357899999983 2221  11  111112 3456777655554                  


Q ss_pred             cCCCeEEEEECCCceEEEeeee----C-CeEEEEEecCCCceEEEecCCc------------------------------
Q psy8891          55 HFDKKVRFWDFRAEEKVRDIEL----H-GKITSLDLSKGTETKFAGSSCN------------------------------   99 (203)
Q Consensus        55 ~~D~~i~vwd~~~~~~~~~~~~----~-~~v~~~~~~~~~~~~~~~~~~~------------------------------   99 (203)
                      .++.++-+-|..+++.+.....    + -+++-+++..++...+......                              
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~  214 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRR  214 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHh
Confidence            2345566666777765544332    1 2466677766655443322110                              


Q ss_pred             -----eEEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEecc
Q psy8891         100 -----DLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus       100 -----~~~~~~~~~~~l-~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                           -.+++++++..+ +|+=..+.+.+||..+++.+....+.
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~  258 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP  258 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC
Confidence                 024667777655 55556778999999988877665543

>KOG0309|consensus

Probab=97.56  E-value=0.00017  Score=60.57  Aligned_cols=106  Identities=23%  Similarity=0.486  Sum_probs=70.1

Q ss_pred             EEcCC-CCEEEEEeCCCcEEEEeCCCCCeEEec----CcCceEEEEeCCCCEEEEecCCCeEEEEECCCce-EEEeeeeC
Q psy8891           4 KFLGD-PTKVVSGSCDRTLKIWDLRSTETKFAG----SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH   77 (203)
Q Consensus         4 ~~~~~-~~~l~t~s~D~~v~lwdl~~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~~   77 (203)
                      .|.|+ ...++|+|.|..|-.||++.....+..    ......|.|+-....+...+..+.|+|||++.+. ++..++.+
T Consensus       121 n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~  200 (1081)
T KOG0309|consen  121 NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGH  200 (1081)
T ss_pred             ccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccc
Confidence            45553 357999999999999999986543211    1122346666433445555788899999998875 45555543


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                       ..|..++|+.-.                  ...+.+++.|++|+.||...
T Consensus       201 vs~vn~~~fnr~~------------------~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  201 VSSVNSIDFNRFK------------------YSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             ceeeehHHHhhhh------------------hhhhcccCCCCceeeecccc
Confidence             345555554311                  12578889999999999764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.52  E-value=0.011  Score=47.59  Aligned_cols=110  Identities=14%  Similarity=0.096  Sum_probs=70.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCce--------EEE--EeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCND--------LVT--YDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~--------~~~--~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      .+.+++.++.++.+.-+|.++++..  ........        .+.  ..-.+..|+.++.++.+..+|.++++.++...
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            4567888888999999999876642  11110000        000  00134577888899999999999998877665


Q ss_pred             eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891          76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      ..+.+.+   .|             ++    .+..++.+..++.+..+|..+|+.+...+..
T Consensus       148 ~~~~~~s---sP-------------~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        148 VAGEALS---RP-------------VV----SDGLVLVHTSNGMLQALNESDGAVKWTVNLD  189 (394)
T ss_pred             CCCceec---CC-------------EE----ECCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence            4433211   00             00    1235666777899999999999988776543

>KOG0309|consensus

Probab=97.49  E-value=0.00043  Score=58.19  Aligned_cols=145  Identities=18%  Similarity=0.383  Sum_probs=79.0

Q ss_pred             EEcCCCC---EEEEEeCCCcEEEEeCCCCC---eEEe--cCc-CceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891           4 KFLGDPT---KVVSGSCDRTLKIWDLRSTE---TKFA--GSS-CNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRD   73 (203)
Q Consensus         4 ~~~~~~~---~l~t~s~D~~v~lwdl~~~~---~~~~--~~~-~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~   73 (203)
                      -|+|..+   ++++-|.-.+ .+|++....   ..+.  ++. ...-..|.+ .+..+++|+.|-.+..||+++......
T Consensus        74 qws~h~a~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y  152 (1081)
T KOG0309|consen   74 QWSPHPAKPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY  152 (1081)
T ss_pred             ecccCCCCceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee
Confidence            4555443   5777776555 489986422   2222  221 111123443 456999999999999999998653211


Q ss_pred             e--eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEEeccc-eEEEEEecCCc
Q psy8891          74 I--ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELHG-KITSLDLSKGK  149 (203)
Q Consensus        74 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~-~~~~~~~~~-~v~~~~~~~~~  149 (203)
                      .  ..+..-..+.++-                  .++. +++.+-.+-|++||++.|. ++..+..+. .++++++..  
T Consensus       153 s~~~w~s~asqVkwny------------------k~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr--  211 (1081)
T KOG0309|consen  153 STSSWRSAASQVKWNY------------------KDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR--  211 (1081)
T ss_pred             eeecccccCceeeecc------------------cCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh--
Confidence            1  1111111222211                  1333 4444556789999998654 344433321 122222111  


Q ss_pred             EEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         150 YYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                                           ..-..+.+++.|++|++||..
T Consensus       212 ---------------------~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  212 ---------------------FKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             ---------------------hhhhhhcccCCCCceeeeccc
Confidence                                 012357789999999999975

>KOG4649|consensus

Probab=97.43  E-value=0.01  Score=44.34  Aligned_cols=110  Identities=19%  Similarity=0.232  Sum_probs=80.1

Q ss_pred             CCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        48 ~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      ..+++.||..+.++--|.+++...++-...+.+.+-+.-                    -|.+++-|.+.+.+.+-+..+
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--------------------vgdfVV~GCy~g~lYfl~~~t   82 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--------------------VGDFVVLGCYSGGLYFLCVKT   82 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--------------------ECCEEEEEEccCcEEEEEecc
Confidence            458899999999999999999877654443433322111                    134788899999999999999


Q ss_pred             CceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         128 EEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      |+....+..-+.|..                       +....++++.+..|+.|++.+.-|.++..++...|
T Consensus        83 Gs~~w~f~~~~~vk~-----------------------~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   83 GSQIWNFVILETVKV-----------------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             hhheeeeeehhhhcc-----------------------ceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            988777655444332                       12234678899999999999999999888776544

>KOG4190|consensus

Probab=97.43  E-value=0.00038  Score=56.79  Aligned_cols=114  Identities=20%  Similarity=0.281  Sum_probs=63.7

Q ss_pred             CCCEEEEecCCCeEEEEECCCce-------EEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC
Q psy8891          47 AGTTIISGHFDKKVRFWDFRAEE-------KVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK  118 (203)
Q Consensus        47 ~~~~l~s~~~D~~i~vwd~~~~~-------~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  118 (203)
                      +.+-++|++.|+++|+|.++.+.       +..+...| .+|.++.+-.                   +-+.+++  .|+
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-------------------~lr~i~S--cD~  804 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-------------------DLRSIAS--CDG  804 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-------------------ccceeee--ccC
Confidence            45689999999999999997542       22233222 2344433322                   3345554  489


Q ss_pred             eEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEE-ecCCCcEEEEeCCCceeee
Q psy8891         119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAV-GSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~s~d~~v~~wd~~~~~~~~  197 (203)
                      -|++||.--++++..++...+-              ..+     ...++.-+.+...++. ++...+|+++|.+.++-..
T Consensus       805 giHlWDPFigr~Laq~~dapk~--------------~a~-----~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~  865 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKE--------------GAG-----GNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC  865 (1034)
T ss_pred             cceeecccccchhHhhhcCccc--------------CCC-----ceeEecccCcchheeeeccchhhheeeeccccccee
Confidence            9999998666554332211100              000     0001111123333444 4778999999998887766


Q ss_pred             eec
Q psy8891         198 VLK  200 (203)
Q Consensus       198 ~~~  200 (203)
                      .++
T Consensus       866 E~k  868 (1034)
T KOG4190|consen  866 ELK  868 (1034)
T ss_pred             eEE
Confidence            654

>KOG1645|consensus

Probab=97.39  E-value=0.012  Score=46.34  Aligned_cols=68  Identities=19%  Similarity=0.124  Sum_probs=49.8

Q ss_pred             ceEEcCCCC-EEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCce
Q psy8891           2 CAKFLGDPT-KVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~   69 (203)
                      .++|||... .+..+|-+.+|++.|+++....  +..+.....++|+-++. +++.|...|.|.|||++..+
T Consensus       198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             hhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            367898777 7888999999999999875432  22233344466765544 67777789999999998764

>KOG2314|consensus

Probab=97.35  E-value=0.0036  Score=51.14  Aligned_cols=107  Identities=7%  Similarity=0.128  Sum_probs=70.4

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCC-CCe-EEecCcCceEEEEeCCCCEEEEecCC-----------CeEEEEECCCce
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRS-TET-KFAGSSCNDLVTYDGAGTTIISGHFD-----------KKVRFWDFRAEE   69 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~-~~~-~~~~~~~~~~~~~~~~~~~l~s~~~D-----------~~i~vwd~~~~~   69 (203)
                      ++|||-|++|+|=-. .-|.+|-=.. .++ .+.+ +....+.++|..++|+|-|..           ..++|||+++|.
T Consensus       216 v~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~  293 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL  293 (698)
T ss_pred             EEecCCceEEEEEec-cceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence            789999999999865 4467885443 111 2222 224557788999999988642           589999999998


Q ss_pred             EEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC
Q psy8891          70 KVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        70 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~  128 (203)
                      ..+.+..- ++                ...-.+.-|+.|++++|--.. .+|.|++..+-
T Consensus       294 lkrsF~~~~~~----------------~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf  336 (698)
T KOG2314|consen  294 LKRSFPVIKSP----------------YLKWPIFRWSHDDKYFARMTG-NSISIYETPSF  336 (698)
T ss_pred             hhcceeccCCC----------------ccccceEEeccCCceeEEecc-ceEEEEecCce
Confidence            76665421 10                011224567888888777665 57888876653

>KOG0882|consensus

Probab=97.34  E-value=0.001  Score=52.88  Aligned_cols=181  Identities=18%  Similarity=0.191  Sum_probs=97.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCC--CCeEEe----cCcCceEEEEeCCCCEEEEecC-CCeEEEEECCCceEEEeeee---C
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRS--TETKFA----GSSCNDLVTYDGAGTTIISGHF-DKKVRFWDFRAEEKVRDIEL---H   77 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~--~~~~~~----~~~~~~~~~~~~~~~~l~s~~~-D~~i~vwd~~~~~~~~~~~~---~   77 (203)
                      -.+.+.++|-||.+|.|.-..  +.....    +......++.+.++..+.|.+. |..+|++|+..-..+.-+..   +
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP   98 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP   98 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence            456789999999999997543  111111    1111122345667778888777 99999999865443321111   1


Q ss_pred             ----------CeEEEEEec--CCCce-EEEecCC--------------ceEEEEcCCCCEEEEeeCCCeEEEEECCC-Cc
Q psy8891          78 ----------GKITSLDLS--KGTET-KFAGSSC--------------NDLVTYDGAGTTIISGHFDKKVRFWDFRA-EE  129 (203)
Q Consensus        78 ----------~~v~~~~~~--~~~~~-~~~~~~~--------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~  129 (203)
                                .++..++.+  .++.. ++.+...              .....|.+.+..++|....|.|.-|.... .+
T Consensus        99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q  178 (558)
T KOG0882|consen   99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ  178 (558)
T ss_pred             CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence                      112222221  11111 1111100              01234555566666666667777776542 00


Q ss_pred             -eEE--EEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         130 -KVR--DIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       130 -~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                       +..  .+++..+-.       .+-+     .+.....+...|+|++..+.+-+.|..||+++..+|++++.+.
T Consensus       179 fPr~~l~~~~K~eTd-------Ly~f-----~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  179 FPRTNLNFELKHETD-------LYGF-----PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             Cccccccccccccch-------hhcc-----cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence             000  011110000       0000     0111123456688999999999999999999999999998875

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.34  E-value=0.017  Score=37.48  Aligned_cols=60  Identities=27%  Similarity=0.396  Sum_probs=42.9

Q ss_pred             EeCCC-CEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEE
Q psy8891          44 YDGAG-TTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF  122 (203)
Q Consensus        44 ~~~~~-~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~i  122 (203)
                      +..++ +.|+.|+.|..||||+  ..+.+.++..++.|..+.....                    ..++.+..+|+|.+
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~--------------------~~F~Y~l~NGTVGv   67 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG--------------------GRFAYALANGTVGV   67 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC--------------------CEEEEEecCCEEEE
Confidence            34443 4899999999999997  4466777877778877765432                    35666777777777


Q ss_pred             EEC
Q psy8891         123 WDF  125 (203)
Q Consensus       123 Wd~  125 (203)
                      ++-
T Consensus        68 Y~~   70 (111)
T PF14783_consen   68 YDR   70 (111)
T ss_pred             EeC
Confidence            754

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.24  E-value=0.023  Score=36.90  Aligned_cols=72  Identities=14%  Similarity=0.215  Sum_probs=43.1

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEE
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLD   84 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~   84 (203)
                      ..|+.||.|..||+|+=...............+.... +..++.+-.+|+|.+|+-  ...++.++....+.++.
T Consensus        16 ~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~-~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~   87 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLG-GGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMA   87 (111)
T ss_pred             ceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcC-CCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEE
Confidence            4799999999999997654222222222112222222 368999999999999974  33344444334444444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.22  E-value=0.072  Score=42.16  Aligned_cols=165  Identities=12%  Similarity=0.182  Sum_probs=94.3

Q ss_pred             EEEEeCC----CcEEEEeCC--CCCeEE----ecCcCceEEEEeCCCCEEEEecC----CCeEEEEECCCc-eEEEeeee
Q psy8891          12 VVSGSCD----RTLKIWDLR--STETKF----AGSSCNDLVTYDGAGTTIISGHF----DKKVRFWDFRAE-EKVRDIEL   76 (203)
Q Consensus        12 l~t~s~D----~~v~lwdl~--~~~~~~----~~~~~~~~~~~~~~~~~l~s~~~----D~~i~vwd~~~~-~~~~~~~~   76 (203)
                      ++.|+.+    +.|..|++.  +++...    ........+.++++++.|++...    ++.|..|++... ..+..+. 
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~-   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN-   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE-
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee-
Confidence            5667776    789999883  333211    11122234678889999988876    468888887654 2221111 


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CCeEEEEECCC-CceEEE---Ee-----------ccceE
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DKKVRFWDFRA-EEKVRD---IE-----------LHGKI  140 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~i~iWd~~~-~~~~~~---~~-----------~~~~v  140 (203)
                           ..         .........+.++|++++|+.+.+ +++|.++++.. +.....   +.           ...+.
T Consensus        81 -----~~---------~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~  146 (345)
T PF10282_consen   81 -----SV---------PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHP  146 (345)
T ss_dssp             -----EE---------EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCE
T ss_pred             -----ee---------ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccc
Confidence                 00         001122234667888889999886 78999999986 333222   11           11346


Q ss_pred             EEEEecCC-cEEEEeecC---------------eeEE--------eeeEEEEEEcCCCEEEE-ecCCCcEEEEeCC
Q psy8891         141 TSLDLSKG-KYYFVFAEG---------------FKVQ--------CDFTRAVFVVDDDYVAV-GSIDGNIYVWDCN  191 (203)
Q Consensus       141 ~~~~~~~~-~~~~~~~~~---------------~~~~--------~~~~~~~~~~~~~~l~s-~s~d~~v~~wd~~  191 (203)
                      ..+.++++ +++++...+               +...        .....+.|+|++++++. ...+++|.++++.
T Consensus       147 H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  147 HQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             EEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             eeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            66777765 444443221               1000        01235678999888655 4568889999987

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.21  E-value=0.053  Score=40.57  Aligned_cols=178  Identities=12%  Similarity=0.123  Sum_probs=94.2

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeEE-ecCcCceEEEEe-CCCCEEEEecCCCeEEEEECCCceEEEeeee--
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETKF-AGSSCNDLVTYD-GAGTTIISGHFDKKVRFWDFRAEEKVRDIEL--   76 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~~~~~~~~~~-~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~--   76 (203)
                      +..|.+ ++..+++--..+.|..||..+.+... ....+.. +.+. +++ .|+.+..++ +.++|+.+++.......  
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G-~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~   80 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNG-MAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPD   80 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEE-EEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEET
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCce-EEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccC
Confidence            357887 66667777678999999998876542 2233333 3444 554 555555544 45559888765433322  


Q ss_pred             ----CCeEEEEEecCCCceEEEecCC-----------------------------ceEEEEcCCCCEEE-EeeCCCeEEE
Q psy8891          77 ----HGKITSLDLSKGTETKFAGSSC-----------------------------NDLVTYDGAGTTII-SGHFDKKVRF  122 (203)
Q Consensus        77 ----~~~v~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~l~-s~s~d~~i~i  122 (203)
                          ....+.+++.+++...++....                             ..=++|+|+++.|+ +-+..+.|..
T Consensus        81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~  160 (246)
T PF08450_consen   81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWR  160 (246)
T ss_dssp             TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEE
T ss_pred             CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEE
Confidence                1235666666665532221110                             11146777777665 4455667777


Q ss_pred             EECCCCce-EEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         123 WDFRAEEK-VRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       123 Wd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +|+..... +.....   +  ..+....            ....-+++..+|...++.-..+.|.++|.+ |+++..++
T Consensus       161 ~~~~~~~~~~~~~~~---~--~~~~~~~------------g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~  221 (246)
T PF08450_consen  161 FDLDADGGELSNRRV---F--IDFPGGP------------GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE  221 (246)
T ss_dssp             EEEETTTCCEEEEEE---E--EE-SSSS------------CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred             Eeccccccceeeeee---E--EEcCCCC------------cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc
Confidence            77643221 111000   0  0000000            001223445567766666678889999988 88877664

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.17  E-value=0.081  Score=42.92  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             EEcCCCCEEEEEeCCC-cEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee-eCCe
Q psy8891           4 KFLGDPTKVVSGSCDR-TLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE-LHGK   79 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~-~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~-~~~~   79 (203)
                      ++..+++-++-|-.|| .+-++|..+++.+.  ........+..+++|+.++.+..-..|-+.|+.++.....-+ ..+-
T Consensus       366 r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~l  445 (668)
T COG4946         366 RIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGL  445 (668)
T ss_pred             EEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccce
Confidence            4556777889999999 89999999876432  223334557788999999999999999999998876532111 1244


Q ss_pred             EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC----CCeEEEEECCCCceE
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF----DKKVRFWDFRAEEKV  131 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~i~iWd~~~~~~~  131 (203)
                      |+.++++|+                   ++.||-+--    -..|+++|+..++..
T Consensus       446 Itdf~~~~n-------------------sr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         446 ITDFDWHPN-------------------SRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             eEEEEEcCC-------------------ceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            666666554                   444444433    357889998876543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.074  Score=41.38  Aligned_cols=197  Identities=11%  Similarity=0.161  Sum_probs=111.9

Q ss_pred             eEEcCCCCEEEEEeCC---CcEEEEeCCC--CCeEEec-----CcCceEEEEeCCCCEEEEecC-CCeEEEEECCCceE-
Q psy8891           3 AKFLGDPTKVVSGSCD---RTLKIWDLRS--TETKFAG-----SSCNDLVTYDGAGTTIISGHF-DKKVRFWDFRAEEK-   70 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D---~~v~lwdl~~--~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~-D~~i~vwd~~~~~~-   70 (203)
                      ++|+|+++.|+++-.+   |.|--|.+..  ++..+..     .....-++.++++++|+++.. -|.|.|+-++.... 
T Consensus        45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l  124 (346)
T COG2706          45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL  124 (346)
T ss_pred             EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence            5789999999998765   6677776653  4432211     111133678899999999986 47999999866322 


Q ss_pred             ---EEeeeeCCe----------EEEEEecCCCceEEEecCC---------------------------ceEEEEcCCCCE
Q psy8891          71 ---VRDIELHGK----------ITSLDLSKGTETKFAGSSC---------------------------NDLVTYDGAGTT  110 (203)
Q Consensus        71 ---~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~  110 (203)
                         +..+...++          +-...+.|++..+++...-                           ...+.|.|++++
T Consensus       125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~  204 (346)
T COG2706         125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY  204 (346)
T ss_pred             ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE
Confidence               122222221          4455566666554431110                           124789999998


Q ss_pred             EEEeeC-CCeEEEEECCCC-ceEEEEe----------ccceEEEEEecCC-cEEEEeecCee---------------EEe
Q psy8891         111 IISGHF-DKKVRFWDFRAE-EKVRDIE----------LHGKITSLDLSKG-KYYFVFAEGFK---------------VQC  162 (203)
Q Consensus       111 l~s~s~-d~~i~iWd~~~~-~~~~~~~----------~~~~v~~~~~~~~-~~~~~~~~~~~---------------~~~  162 (203)
                      .+.... +++|-+|..... ..+..++          .......+.++++ +++.++.-+..               ...
T Consensus       205 aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~  284 (346)
T COG2706         205 AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG  284 (346)
T ss_pred             EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE
Confidence            877765 789999988753 2222221          1122334444443 34333322110               000


Q ss_pred             ------e-eEEEEEEcCCCEEEEecCC-CcEEEE--eCCCceeeeee
Q psy8891         163 ------D-FTRAVFVVDDDYVAVGSID-GNIYVW--DCNTEQVEAVL  199 (203)
Q Consensus       163 ------~-~~~~~~~~~~~~l~s~s~d-~~v~~w--d~~~~~~~~~~  199 (203)
                            . ...-.+++.+++|+.+.+| .+|.+|  |.++|++-...
T Consensus       285 ~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~  331 (346)
T COG2706         285 ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLG  331 (346)
T ss_pred             EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence                  0 1123466788998888864 457777  45677776544

>smart00320 WD40 WD40 repeats

Probab=97.16  E-value=0.0006  Score=34.05  Aligned_cols=24  Identities=38%  Similarity=0.580  Sum_probs=14.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWD   25 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwd   25 (203)
                      ++.|.+++..+++++.|+.+++||
T Consensus        17 ~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       17 SVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEECCCCCEEEEecCCCeEEEcC
Confidence            345555556666666666666664

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.08  E-value=0.087  Score=40.65  Aligned_cols=195  Identities=14%  Similarity=0.140  Sum_probs=103.6

Q ss_pred             eEEcC-CCCEEEEEeCCCc-EEEEeCCCCCeEEecC-----cCceEEEEeCCCCEEEEe-----cCCCeEEEEECC-Cce
Q psy8891           3 AKFLG-DPTKVVSGSCDRT-LKIWDLRSTETKFAGS-----SCNDLVTYDGAGTTIISG-----HFDKKVRFWDFR-AEE   69 (203)
Q Consensus         3 ~~~~~-~~~~l~t~s~D~~-v~lwdl~~~~~~~~~~-----~~~~~~~~~~~~~~l~s~-----~~D~~i~vwd~~-~~~   69 (203)
                      ++.+| ++..++-+-.-|+ ..+||..+++......     +-..-..|+++|++|++.     .-.|.|-|||.+ .-+
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~   89 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR   89 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence            45567 4445556666555 5678888765432111     111124688999999887     345899999998 446


Q ss_pred             EEEeeeeCCe-EEEEEecCCCceEEEecCCceEEEEcCC-C-CEEEEeeCCCeEEEEECCCCceEEEEeccc-----eEE
Q psy8891          70 KVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGA-G-TTIISGHFDKKVRFWDFRAEEKVRDIELHG-----KIT  141 (203)
Q Consensus        70 ~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-----~v~  141 (203)
                      .+.++..++- .-.+.+.+++.+++.+..-..  + .|+ | ..|--...+-.+-+-|..+|+.+....+..     .+.
T Consensus        90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~--T-hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIE--T-HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             EEeEecCCCcChhhEEEcCCCCEEEEEcCCCc--c-CcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            6666654431 233456777766655432110  0 111 1 122222334455555666665554444321     122


Q ss_pred             EEEecCCcEEEEee-----------------cCe-------------eEEeeeEEEEEEcCCCEE-EEecCCCcEEEEeC
Q psy8891         142 SLDLSKGKYYFVFA-----------------EGF-------------KVQCDFTRAVFVVDDDYV-AVGSIDGNIYVWDC  190 (203)
Q Consensus       142 ~~~~~~~~~~~~~~-----------------~~~-------------~~~~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~  190 (203)
                      =+++..+..+....                 .+.             ....-+-.++++.++.++ +|+-.-+.+.+||.
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~  246 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA  246 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence            22333222111100                 000             001112356677788776 45556888999999


Q ss_pred             CCceeeeeec
Q psy8891         191 NTEQVEAVLK  200 (203)
Q Consensus       191 ~~~~~~~~~~  200 (203)
                      .+++++....
T Consensus       247 ~tg~~~~~~~  256 (305)
T PF07433_consen  247 ATGRLLGSVP  256 (305)
T ss_pred             CCCCEeeccc
Confidence            9999987653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.06  E-value=0.14  Score=42.60  Aligned_cols=29  Identities=21%  Similarity=0.306  Sum_probs=25.3

Q ss_pred             CCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         172 DDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       172 ~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .++.++.++.|+.++.+|.++|+.+-+++
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            56788899999999999999999987664

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.99  E-value=0.084  Score=44.64  Aligned_cols=100  Identities=16%  Similarity=0.215  Sum_probs=57.3

Q ss_pred             CCcEEEEeCCC----C-CeEE--ecCcCceEEEEeCCCCEEEEe-cCCCeEEEEECCCceEEE--eeeeCCeE-EEEEec
Q psy8891          18 DRTLKIWDLRS----T-ETKF--AGSSCNDLVTYDGAGTTIISG-HFDKKVRFWDFRAEEKVR--DIELHGKI-TSLDLS   86 (203)
Q Consensus        18 D~~v~lwdl~~----~-~~~~--~~~~~~~~~~~~~~~~~l~s~-~~D~~i~vwd~~~~~~~~--~~~~~~~v-~~~~~~   86 (203)
                      +++|.+.|..+    . +...  .......-+.++||+++++.+ ..+.++-|.|++..+...  .+.....| ..+.+ 
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence            35677777766    2 2211  111111236788999976555 569999999998755321  11111111 00111 


Q ss_pred             CCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          87 KGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                               ..-.....|+++|....|.--|..|-.||+..
T Consensus       374 ---------GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 ---------GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ---------CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                     01112356888888777788899999999875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.96  E-value=0.26  Score=44.27  Aligned_cols=91  Identities=13%  Similarity=0.186  Sum_probs=52.7

Q ss_pred             ceEEcCCCCEEEEEeC---C---CcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecC---CCeEEEEECCCceE
Q psy8891           2 CAKFLGDPTKVVSGSC---D---RTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHF---DKKVRFWDFRAEEK   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~---D---~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~---D~~i~vwd~~~~~~   70 (203)
                      .++|..||+++|..+-   +   +.+|+|+=+......  ....-...++|.|+|+.+++.-.   ...|-+|.- .|-.
T Consensus       214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLr  292 (928)
T PF04762_consen  214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLR  292 (928)
T ss_pred             EEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcE
Confidence            4678999999998775   3   579999876321111  11112334789999999998854   334555542 2211


Q ss_pred             EEeee-----eCCeEEEEEecCCCceEE
Q psy8891          71 VRDIE-----LHGKITSLDLSKGTETKF   93 (203)
Q Consensus        71 ~~~~~-----~~~~v~~~~~~~~~~~~~   93 (203)
                      -.++.     ....|..+.|+++.+.+.
T Consensus       293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLA  320 (928)
T PF04762_consen  293 HGEFTLRFDPEEEKVIELAWNSDSEILA  320 (928)
T ss_pred             eeeEecCCCCCCceeeEEEECCCCCEEE
Confidence            11221     124566676666655443

>KOG2041|consensus

Probab=96.93  E-value=0.0057  Score=51.70  Aligned_cols=85  Identities=9%  Similarity=0.137  Sum_probs=55.0

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeE
Q psy8891          41 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV  120 (203)
Q Consensus        41 ~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  120 (203)
                      .+.|.....++++||.||.+||-.+.+...-...++-..+..+..+   +++-.......+++|..+.+.|.|...+|-|
T Consensus        19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmN---QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMN---QTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchh---hhhccCcceEEEEEeccccccccccCCCceE
Confidence            3568888889999999999999998765432111110111222221   1111223334567888888899999999999


Q ss_pred             EEEECCCC
Q psy8891         121 RFWDFRAE  128 (203)
Q Consensus       121 ~iWd~~~~  128 (203)
                      -+|-+-.+
T Consensus        96 iVWmlykg  103 (1189)
T KOG2041|consen   96 IVWMLYKG  103 (1189)
T ss_pred             EEEeeecc
Confidence            99987554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.89  E-value=0.029  Score=45.58  Aligned_cols=106  Identities=12%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             eEEcCCCCEEEEEe--CCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCC---CeEEEEECCCceE-EEeeee
Q psy8891           3 AKFLGDPTKVVSGS--CDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFD---KKVRFWDFRAEEK-VRDIEL   76 (203)
Q Consensus         3 ~~~~~~~~~l~t~s--~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~i~vwd~~~~~~-~~~~~~   76 (203)
                      ..|.|.+++++..+  .+.++.++|++................|+|.+++++.+|.|   |.|-+||....-. ...+..
T Consensus       280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~  359 (561)
T COG5354         280 FTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG  359 (561)
T ss_pred             eeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec
Confidence            56888888876644  68899999998753322222223345678899999998877   5788888654322 111111


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC------CCeEEEEECCCC
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF------DKKVRFWDFRAE  128 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------d~~i~iWd~~~~  128 (203)
                                          .......|+|+|+++.+...      |..|+|||+...
T Consensus       360 --------------------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         360 --------------------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             --------------------CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence                                11223457778777666543      788999998643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=96.84  E-value=0.17  Score=41.26  Aligned_cols=71  Identities=7%  Similarity=0.126  Sum_probs=40.3

Q ss_pred             eEEEEeCCCCE-EEEecC---CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEE-e
Q psy8891          40 DLVTYDGAGTT-IISGHF---DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS-G  114 (203)
Q Consensus        40 ~~~~~~~~~~~-l~s~~~---D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~  114 (203)
                      ....|+|+++. ++..+.   +..|.++|+.+++...-....+.....                   .|+|||+.|+. .
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~-------------------~~SPDG~~la~~~  251 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVS-------------------DVSKDGSKLLLTM  251 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEee-------------------EECCCCCEEEEEE
Confidence            34578999984 554333   357889999877653322222222233                   35566654433 3


Q ss_pred             eC--CCeEEEEECCCCc
Q psy8891         115 HF--DKKVRFWDFRAEE  129 (203)
Q Consensus       115 s~--d~~i~iWd~~~~~  129 (203)
                      +.  +..|.++|+..++
T Consensus       252 ~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        252 APKGQPDIYLYDTNTKT  268 (419)
T ss_pred             ccCCCcEEEEEECCCCc
Confidence            22  3467777877665

>KOG1275|consensus

Probab=96.78  E-value=0.015  Score=50.36  Aligned_cols=107  Identities=19%  Similarity=0.337  Sum_probs=72.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCe-EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC-eEEEEEe
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTET-KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDL   85 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~-~v~~~~~   85 (203)
                      ++..+.-|+-...+-.+|+++.+. .........+.-.-.+++.+.+|..-|+|-+-|.++-+.++++..|. .+..   
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD---  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD---  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceee---
Confidence            455677777778888888877432 22221111122223466899999999999999999999998887664 3333   


Q ss_pred             cCCCceEEEecCCceEEEEcCCCCEEEEeeC---------CCeEEEEECCCCceEEEEe
Q psy8891          86 SKGTETKFAGSSCNDLVTYDGAGTTIISGHF---------DKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---------d~~i~iWd~~~~~~~~~~~  135 (203)
                                        |+-.|+.|++||+         |.-|++||+|+.+.+..+.
T Consensus       223 ------------------fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~  263 (1118)
T KOG1275|consen  223 ------------------FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ  263 (1118)
T ss_pred             ------------------eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence                              3445677888877         6678999999766554433

>KOG2114|consensus

Probab=96.77  E-value=0.26  Score=42.84  Aligned_cols=65  Identities=15%  Similarity=0.155  Sum_probs=39.9

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCC-eEEecCcC--ceEEEEeCCCCEEEEecCCC-----eEEEEECCCc
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTE-TKFAGSSC--NDLVTYDGAGTTIISGHFDK-----KVRFWDFRAE   68 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~-~~~~~~~~--~~~~~~~~~~~~l~s~~~D~-----~i~vwd~~~~   68 (203)
                      .+++.+..++-|+.||.|-+.+-.-.. .-+.....  ...+-...+.+.|+|-+.|.     .++|||+..-
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            578899999999999998777654322 11111111  11112223345888888775     5999998643

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.75  E-value=0.16  Score=43.07  Aligned_cols=76  Identities=16%  Similarity=0.193  Sum_probs=45.2

Q ss_pred             EEEcCCCCEEEEeeC-CCeEEEEECCCCceEE--EEeccceE-EEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEE
Q psy8891         102 VTYDGAGTTIISGHF-DKKVRFWDFRAEEKVR--DIELHGKI-TSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA  177 (203)
Q Consensus       102 ~~~~~~~~~l~s~s~-d~~i~iWd~~~~~~~~--~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  177 (203)
                      +.++|||++++.++. +.+|.+.|+.+.....  .+.....+ ..+.+.               -......|.++|....
T Consensus       326 V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG---------------lGPLHTaFDg~G~ayt  390 (635)
T PRK02888        326 VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG---------------LGPLHTAFDGRGNAYT  390 (635)
T ss_pred             eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC---------------CCcceEEECCCCCEEE
Confidence            356888887776665 8899999997643211  01111110 000110               0112355667777777


Q ss_pred             EecCCCcEEEEeCCC
Q psy8891         178 VGSIDGNIYVWDCNT  192 (203)
Q Consensus       178 s~s~d~~v~~wd~~~  192 (203)
                      |-..|..|..||+.+
T Consensus       391 slf~dsqv~kwn~~~  405 (635)
T PRK02888        391 TLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEeecceeEEEehHH
Confidence            777899999999875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.74  E-value=0.18  Score=41.34  Aligned_cols=117  Identities=14%  Similarity=0.179  Sum_probs=57.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKIT   81 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~   81 (203)
                      .+.++|+|+.++. ..||.-.++.....+....+.. .. ..|.+ .+..+.-...++|+|+.--..+..+.+..+..+.
T Consensus        37 ~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~g-~~-~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~  112 (443)
T PF04053_consen   37 SLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGSG-LS-FVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVE  112 (443)
T ss_dssp             EEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE--SE-EEE-T-SSEEEEE-TTS-EEEEETTEE-TT-----SS-EE
T ss_pred             eEEECCCCCEEEE-EcCCEEEEEEccCCcccccCce-eE-EEEec-CccEEEEECCCeEEEEEcCccccceEEcCCcccc
Confidence            4678899988777 4578888887544333333222 22 34555 3456666668899997422222222332221111


Q ss_pred             EEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEec
Q psy8891          82 SLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLS  146 (203)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~  146 (203)
                      .         +           |.  |..|+..+ ++.|.+||..+++.++.+.... ++.+-++
T Consensus       113 ~---------I-----------f~--G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws  153 (443)
T PF04053_consen  113 K---------I-----------FG--GNLLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWS  153 (443)
T ss_dssp             E---------E-----------E---SSSEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-
T ss_pred             e---------E-----------Ec--CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEE
Confidence            1         1           11  44555554 4589999999999888876543 4444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.73  E-value=0.25  Score=40.42  Aligned_cols=111  Identities=10%  Similarity=0.111  Sum_probs=62.3

Q ss_pred             EeCCCcEEEEeCCCCCe-----EEecCcCceEEEEeCCCCEEEEe-----------cCCCeEEEEECCCceEEEeeeeCC
Q psy8891          15 GSCDRTLKIWDLRSTET-----KFAGSSCNDLVTYDGAGTTIISG-----------HFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus        15 ~s~D~~v~lwdl~~~~~-----~~~~~~~~~~~~~~~~~~~l~s~-----------~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      .+.++++++|.+.....     .+....  ..+-|.+.|++|..-           -...++.+++++...........+
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~--~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~  275 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSG--VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKD  275 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecc--cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccc
Confidence            66788899998874332     122221  124566666644321           013567888877444333333457


Q ss_pred             eEEEEEecCCCceEEEecCC------------c----------eEEEEcCCCCEEEEeeCCC---eEEEEECCC
Q psy8891          79 KITSLDLSKGTETKFAGSSC------------N----------DLVTYDGAGTTIISGHFDK---KVRFWDFRA  127 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~------------~----------~~~~~~~~~~~l~s~s~d~---~i~iWd~~~  127 (203)
                      +|..+.|.|....+...+..            +          .-..|+|.+++++.++.|+   .|-+||...
T Consensus       276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             cceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence            78888888776654432211            0          0134677777777777763   667777553

>KOG2066|consensus

Probab=96.72  E-value=0.11  Score=44.64  Aligned_cols=107  Identities=18%  Similarity=0.160  Sum_probs=67.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCe--EEecCcCceEEEEeCC-----CCEEEEecCCCeEEEEECCCc---eEEEeeeeC
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDLVTYDGA-----GTTIISGHFDKKVRFWDFRAE---EKVRDIELH   77 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~--~~~~~~~~~~~~~~~~-----~~~l~s~~~D~~i~vwd~~~~---~~~~~~~~~   77 (203)
                      +|+.++|||.||+|.+-.+-+.+.  ......+...++++|+     .+.+++||.-| +-++.-+=-   ...---...
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e  160 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE  160 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence            689999999999999998876443  2233344455677765     56899999998 666642211   111011223


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      |+|.++.+.                     |..||=++.+ -|+++|+.+++.+..++.+
T Consensus       161 G~I~~i~W~---------------------g~lIAWand~-Gv~vyd~~~~~~l~~i~~p  198 (846)
T KOG2066|consen  161 GPIHSIKWR---------------------GNLIAWANDD-GVKVYDTPTRQRLTNIPPP  198 (846)
T ss_pred             cceEEEEec---------------------CcEEEEecCC-CcEEEeccccceeeccCCC
Confidence            556655543                     3456666544 5889998887776666544

>KOG1832|consensus

Probab=96.53  E-value=0.0016  Score=56.07  Aligned_cols=171  Identities=15%  Similarity=0.179  Sum_probs=89.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCceEE---EEeCCCCEE-EEecCCC-eEEEEECCC-ceEEEeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLV---TYDGAGTTI-ISGHFDK-KVRFWDFRA-EEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~---~~~~~~~~l-~s~~~D~-~i~vwd~~~-~~~~~~~~   75 (203)
                      |++|+-+...|+.|+..|.||++++.++.-......+...+   --+.+|..+ .++++.. -.-+|++.. +...+++.
T Consensus      1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ 1185 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD 1185 (1516)
T ss_pred             eEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc
Confidence            78888888889999999999999988765332211122212   223355543 3444444 566888754 22333333


Q ss_pred             eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ec----cceEEEEEecCCcE
Q psy8891          76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-EL----HGKITSLDLSKGKY  150 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~-~~----~~~v~~~~~~~~~~  150 (203)
                      ...   ++.|+.                   ....-+.|.....+.+||+.++.+..+. ..    +-.-+...++|...
T Consensus      1186 ed~---~vkFsn-------------------~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1186 EDK---AVKFSN-------------------SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             ccc---eeehhh-------------------hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence            221   122222                   1112223333357889999987765442 11    11123445555543


Q ss_pred             EEEeecCeeE-------------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         151 YFVFAEGFKV-------------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       151 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ++... |...             ......-.|+|.|..++.-+     .|||+++.++++.-+
T Consensus      1244 LIlnd-GvLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1244 LILND-GVLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred             eEeeC-ceeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence            33221 1100             00112234677777766643     589999888877543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.49  E-value=0.53  Score=41.37  Aligned_cols=176  Identities=15%  Similarity=0.142  Sum_probs=88.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCce-----------E--EEEeC--CCCEEEEecC----------CCeEE
Q psy8891           9 PTKVVSGSCDRTLKIWDLRSTETKF--AGSSCND-----------L--VTYDG--AGTTIISGHF----------DKKVR   61 (203)
Q Consensus         9 ~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~-----------~--~~~~~--~~~~l~s~~~----------D~~i~   61 (203)
                      +.+++.++.|+.+.-.|.++++..-  ......+           .  ...+|  .+..|+.|+.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            4578888889999888988876431  1100000           0  00111  1345666643          68999


Q ss_pred             EEECCCceEEEeeeeCCeEEEEEecCCCceEEEecC-CceEEEEcCCCCEEEEee------------------CCCeEEE
Q psy8891          62 FWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSS-CNDLVTYDGAGTTIISGH------------------FDKKVRF  122 (203)
Q Consensus        62 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~s------------------~d~~i~i  122 (203)
                      -+|+++++.+..+....+... ...+.++....+.. .-....|++....++.+.                  +.+.|--
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~-~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPT-APPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcc-cCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            999999998876643111000 00011111111111 112233444433333322                  2345555


Q ss_pred             EECCCCceEEEEec-cceEEEEEecCCcEEEEeecCeeEEeeeEEEEEE-cCCC---EEEEecCCCcEEEEeCCCceeee
Q psy8891         123 WDFRAEEKVRDIEL-HGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV-VDDD---YVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       123 Wd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      .|.++|+....++. +..+-..++.....++               .+. .+++   .++.++.+|.+++.|.++|+++-
T Consensus       419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~---------------d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLV---------------DLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             EeCCCCceEEEecccCCccccccccCCceEE---------------eeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            56666665554433 2222222211111111               011 1332   68899999999999999999987


Q ss_pred             eec
Q psy8891         198 VLK  200 (203)
Q Consensus       198 ~~~  200 (203)
                      ..+
T Consensus       484 ~~~  486 (764)
T TIGR03074       484 PVE  486 (764)
T ss_pred             ece
Confidence            653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1912|consensus

Probab=96.44  E-value=0.16  Score=43.81  Aligned_cols=127  Identities=15%  Similarity=0.178  Sum_probs=77.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---EEecCcCceEEEEeCC------------CCEEEEecCCCeEEEEECC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET---KFAGSSCNDLVTYDGA------------GTTIISGHFDKKVRFWDFR   66 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~~~~~~~~~~~~------------~~~l~s~~~D~~i~vwd~~   66 (203)
                      ++.|+|.|- ++-|| -..|.+-|-.+.+.   ...+......+.|.|.            .-.|+++...|.|-+||+.
T Consensus        20 A~Dw~~~GL-iAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~   97 (1062)
T KOG1912|consen   20 AADWSPSGL-IAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV   97 (1062)
T ss_pred             ccccCccce-EEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh
Confidence            456777663 55555 36788888776432   2222333444555431            1268888999999999998


Q ss_pred             CceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEEeccceE-EEE
Q psy8891          67 AEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDIELHGKI-TSL  143 (203)
Q Consensus        67 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v-~~~  143 (203)
                      ....+..++.+ .++..+.+-+                +.+++ ..|+.-..-.++-+||..+|+..........+ .++
T Consensus        98 ~~s~~~~l~~~~~~~qdl~W~~----------------~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f  161 (1062)
T KOG1912|consen   98 LASVINWLSHSNDSVQDLCWVP----------------ARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCF  161 (1062)
T ss_pred             hhhhhhhhcCCCcchhheeeee----------------ccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeee
Confidence            87766666554 2343333322                23344 45666677789999999999988766554443 334


Q ss_pred             Eec
Q psy8891         144 DLS  146 (203)
Q Consensus       144 ~~~  146 (203)
                      .+.
T Consensus       162 ~~D  164 (1062)
T KOG1912|consen  162 RVD  164 (1062)
T ss_pred             eeC
Confidence            443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.43  E-value=0.05  Score=41.77  Aligned_cols=67  Identities=15%  Similarity=0.335  Sum_probs=40.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC---eE----EecC--------------cCceEEEEeCCC-CEEEEecCCCe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE---TK----FAGS--------------SCNDLVTYDGAG-TTIISGHFDKK   59 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~---~~----~~~~--------------~~~~~~~~~~~~-~~l~s~~~D~~   59 (203)
                      +|-|..-|.+|+||...|.|-++.-....   .+    +.++              ..+.+-.+.+.+ ++++-...|++
T Consensus        31 aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdkt  110 (460)
T COG5170          31 AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKT  110 (460)
T ss_pred             EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCce
Confidence            45667778899999988999999754311   11    1111              111122233322 35666679999


Q ss_pred             EEEEECCCc
Q psy8891          60 VRFWDFRAE   68 (203)
Q Consensus        60 i~vwd~~~~   68 (203)
                      ||+|.+...
T Consensus       111 iKlWKiyek  119 (460)
T COG5170         111 IKLWKIYEK  119 (460)
T ss_pred             eeeeeeecc
Confidence            999998654

>KOG1645|consensus

Probab=96.40  E-value=0.021  Score=45.09  Aligned_cols=70  Identities=16%  Similarity=0.161  Sum_probs=53.6

Q ss_pred             EEEeCCCC-EEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeE
Q psy8891          42 VTYDGAGT-TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV  120 (203)
Q Consensus        42 ~~~~~~~~-~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  120 (203)
                      ++++|..+ ++..++.+.+|+|.|+++.-.......+..+.+.+|.-+.                  .++|+.|-..|.|
T Consensus       199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde------------------~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE------------------RHVIYAGLQNGMV  260 (463)
T ss_pred             hccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC------------------cceeEEeccCceE
Confidence            45667655 7899999999999999988776666656666666554432                  3578888899999


Q ss_pred             EEEECCCCc
Q psy8891         121 RFWDFRAEE  129 (203)
Q Consensus       121 ~iWd~~~~~  129 (203)
                      .++|++..+
T Consensus       261 lvyD~R~~~  269 (463)
T KOG1645|consen  261 LVYDMRQPE  269 (463)
T ss_pred             EEEEccCCC
Confidence            999998654

>KOG3617|consensus

Probab=96.34  E-value=0.18  Score=43.96  Aligned_cols=65  Identities=12%  Similarity=0.143  Sum_probs=52.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR   66 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~   66 (203)
                      +.+|+|..-.|+.|=.-|.+-+|...+.+...   .+...+..+.|+++|+.++|+..-|.+.+|...
T Consensus        64 SLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   64 SLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            45788888889999999999999887654322   233345668899999999999999999999875

>KOG2444|consensus

Probab=96.27  E-value=0.033  Score=40.80  Aligned_cols=67  Identities=10%  Similarity=0.221  Sum_probs=42.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCC-CCe--EE-ecCcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           9 PTKVVSGSCDRTLKIWDLRS-TET--KF-AGSSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         9 ~~~l~t~s~D~~v~lwdl~~-~~~--~~-~~~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      ++.++.|+.||.|.+|++.. +..  .. ..... ...+....++.+..++..|+.||-|++...+.+-...
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            45689999999999998863 111  00 01111 1112222355688899999999999998877654443

>smart00320 WD40 WD40 repeats

Probab=96.26  E-value=0.0085  Score=29.50  Aligned_cols=25  Identities=44%  Similarity=0.751  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         165 TRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       165 ~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      ..+.+.+++.++++++.|+.+++||
T Consensus        16 ~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       16 TSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             eEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455666778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.26  E-value=0.84  Score=41.18  Aligned_cols=188  Identities=14%  Similarity=0.174  Sum_probs=104.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEE----eCCCCCeEEecC--cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIW----DLRSTETKFAGS--SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lw----dl~~~~~~~~~~--~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      ++.|.++...++.+..+|.|-+.    |.........+.  .......|+||++.|+-...++++-+-+ ++-+.+.+..
T Consensus        80 s~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~  158 (928)
T PF04762_consen   80 SFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVP  158 (928)
T ss_pred             EEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEee
Confidence            45677888889999999999999    665544433222  2234568999999888888888887754 3333333222


Q ss_pred             eC------CeEEEEEecCCCce-----------------E-------EEecCCceEEEEcCCCCEEEEeeC----C--Ce
Q psy8891          76 LH------GKITSLDLSKGTET-----------------K-------FAGSSCNDLVTYDGAGTTIISGHF----D--KK  119 (203)
Q Consensus        76 ~~------~~v~~~~~~~~~~~-----------------~-------~~~~~~~~~~~~~~~~~~l~s~s~----d--~~  119 (203)
                      .+      ++-.++-|.+....                 +       +.-......+.|-.||.+++..+.    +  +.
T Consensus       159 l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~  238 (928)
T PF04762_consen  159 LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRV  238 (928)
T ss_pred             cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeE
Confidence            11      11122222211000                 0       000011235789999999988875    2  68


Q ss_pred             EEEEECCCCceEEEEecc-ceEEEEEecCCcE--------------EEEeecCeeE----------EeeeEEEEEEcCCC
Q psy8891         120 VRFWDFRAEEKVRDIELH-GKITSLDLSKGKY--------------YFVFAEGFKV----------QCDFTRAVFVVDDD  174 (203)
Q Consensus       120 i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~--------------~~~~~~~~~~----------~~~~~~~~~~~~~~  174 (203)
                      +|+|+-. |+...+.+.- +--..+++.|...              .|..+.|.++          ...+..+.+++++.
T Consensus       239 iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~  317 (928)
T PF04762_consen  239 IRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE  317 (928)
T ss_pred             EEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence            9999954 4432222110 0011122222222              2222223221          12345677888999


Q ss_pred             EEEEecCCCcEEEEeCCC
Q psy8891         175 YVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       175 ~l~s~s~d~~v~~wd~~~  192 (203)
                      .|+.--.|. |++|-...
T Consensus       318 iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  318 ILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             EEEEEecCC-ceEEEeeC
Confidence            998877555 99998654

>KOG4640|consensus

Probab=96.16  E-value=0.041  Score=45.87  Aligned_cols=73  Identities=12%  Similarity=0.242  Sum_probs=56.7

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeE
Q psy8891          42 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV  120 (203)
Q Consensus        42 ~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  120 (203)
                      +.|.|.-..+|.+-.+|.+-++.+. .+.+.++..++. ++                  ...+|.|||+.|+.|-.||+|
T Consensus        26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~------------------~sL~W~~DGkllaVg~kdG~I   86 (665)
T KOG4640|consen   26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVT------------------ASLCWRPDGKLLAVGFKDGTI   86 (665)
T ss_pred             EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccc------------------eeeeecCCCCEEEEEecCCeE
Confidence            5677877799999999999998887 566666653332 22                  135688899999999999999


Q ss_pred             EEEECCCCceEEE
Q psy8891         121 RFWDFRAEEKVRD  133 (203)
Q Consensus       121 ~iWd~~~~~~~~~  133 (203)
                      ++-|+.++..+..
T Consensus        87 ~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   87 RLHDVEKGGRLVS   99 (665)
T ss_pred             EEEEccCCCceec
Confidence            9999999887665

>KOG4640|consensus

Probab=96.04  E-value=0.042  Score=45.83  Aligned_cols=71  Identities=13%  Similarity=0.162  Sum_probs=52.5

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD   73 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~   73 (203)
                      +-|+|.-..+|++-++|.|-+..+..++...   .+......++|.|||+.|+.|=.||+|++.|+..+..+..
T Consensus        26 ~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   26 IEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             EEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            4578888889999999988666555433221   1112223578999999999999999999999998876654

>KOG2444|consensus

Probab=95.93  E-value=0.042  Score=40.26  Aligned_cols=101  Identities=13%  Similarity=0.130  Sum_probs=54.0

Q ss_pred             EEEEeCCCcEEEEeCCCCCeEEecCc-CceEEEEeCCCCEEEEecCCCeEEEEECCCceEE--EeeeeCCeEEEEEecCC
Q psy8891          12 VVSGSCDRTLKIWDLRSTETKFAGSS-CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV--RDIELHGKITSLDLSKG   88 (203)
Q Consensus        12 l~t~s~D~~v~lwdl~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~--~~~~~~~~v~~~~~~~~   88 (203)
                      +..-|+|++|+-++++..+....... .........-+..|+.|..||.|.+|........  ........+...     
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~-----  107 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG-----  107 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec-----
Confidence            33456788888888764321110000 0011122234568999999999999987632211  000001111110     


Q ss_pred             CceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce
Q psy8891          89 TETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK  130 (203)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~  130 (203)
                                   +.-..++.+..++.+|+.||.|++.-++.
T Consensus       108 -------------Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~  136 (238)
T KOG2444|consen  108 -------------IPNGRDSSLGCVGAQDGRIRACNIKPNKV  136 (238)
T ss_pred             -------------cccccccceeEEeccCCceeeeccccCce
Confidence                         00112345788999999999999875543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.77  E-value=0.87  Score=37.25  Aligned_cols=68  Identities=15%  Similarity=0.171  Sum_probs=40.8

Q ss_pred             eEEcCCCCEEEEEeC---C-CcEEEEeCCCCCeE--EecCcCceEEEEeCCCCE-EEEecCCC--eEEEEECCCceE
Q psy8891           3 AKFLGDPTKVVSGSC---D-RTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTT-IISGHFDK--KVRFWDFRAEEK   70 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~---D-~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~-l~s~~~D~--~i~vwd~~~~~~   70 (203)
                      -+|+|+++.++.-+.   . ..+.++|+.+++..  .........-.|+|+++. +++...|+  .|.+.|+.....
T Consensus       198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~  274 (425)
T COG0823         198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL  274 (425)
T ss_pred             cccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence            467888887655422   1 35888899875532  211222333467898885 45556676  455667766653

>KOG1832|consensus

Probab=95.37  E-value=0.017  Score=50.14  Aligned_cols=77  Identities=12%  Similarity=0.298  Sum_probs=53.3

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC-
Q psy8891          41 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK-  118 (203)
Q Consensus        41 ~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-  118 (203)
                      .++|+...++|+.|+..|.||++++.+|........| .+++-++.+.++++.                  |.++++.. 
T Consensus      1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~------------------Ltsss~S~P 1167 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQ------------------LTSSSSSSP 1167 (1516)
T ss_pred             eEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCccee------------------eeeccccCc
Confidence            4567888899999999999999999998766555555 457777766666543                  44444444 


Q ss_pred             eEEEEECCC-CceEEEEe
Q psy8891         119 KVRFWDFRA-EEKVRDIE  135 (203)
Q Consensus       119 ~i~iWd~~~-~~~~~~~~  135 (203)
                      -..+|++.+ +.+.+++.
T Consensus      1168 lsaLW~~~s~~~~~Hsf~ 1185 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFD 1185 (1516)
T ss_pred             hHHHhccccccCcccccc
Confidence            567898763 34444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.23  E-value=1.2  Score=35.15  Aligned_cols=112  Identities=21%  Similarity=0.266  Sum_probs=68.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCeEEec---------------CcCceEEEEeCCCCEEEEe---c-----CC--CeEE
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTETKFAG---------------SSCNDLVTYDGAGTTIISG---H-----FD--KKVR   61 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~~~~~---------------~~~~~~~~~~~~~~~l~s~---~-----~D--~~i~   61 (203)
                      ..+.+++=-|.+|.|+--|+......+..               +....++++++..+.|+..   +     .|  ..|-
T Consensus       193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW  272 (342)
T PF06433_consen  193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW  272 (342)
T ss_dssp             TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred             CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence            34444544678888888887764432110               1112345666655555543   1     12  2688


Q ss_pred             EEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEec
Q psy8891          62 FWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        62 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      ++|+.+++.+..+....++.+++.+.+..                  ..|++.+ .++.+.++|..+|+.+++++.
T Consensus       273 v~D~~t~krv~Ri~l~~~~~Si~Vsqd~~------------------P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  273 VYDLKTHKRVARIPLEHPIDSIAVSQDDK------------------PLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEETTTTEEEEEEEEEEEESEEEEESSSS-------------------EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEECCCCeEEEEEeCCCccceEEEccCCC------------------cEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            88999999998888777777777776543                  3555544 478999999999998887753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.12  E-value=1.2  Score=37.22  Aligned_cols=119  Identities=15%  Similarity=0.166  Sum_probs=67.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEe------------------cCCCeEEEEECCCceEEE
Q psy8891          11 KVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISG------------------HFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus        11 ~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~------------------~~D~~i~vwd~~~~~~~~   72 (203)
                      .++.++.+|.+...|.++++..-.......-...++  +.++.+                  ..++.+.-.|+.+++.+.
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W  380 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVW  380 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeeccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEee
Confidence            477788899999999988775321110000011122  333332                  246778888888888766


Q ss_pred             eeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEE
Q psy8891          73 DIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKIT  141 (203)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~  141 (203)
                      .............  +.. ...    ...   ...+..|+.++.|+.|+.+|..+|+.+.+.++...+.
T Consensus       381 ~~~~~~~~~~~~~--g~~-~~~----~~~---~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~  439 (488)
T cd00216         381 EKREGTIRDSWNI--GFP-HWG----GSL---ATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQ  439 (488)
T ss_pred             EeeCCcccccccc--CCc-ccC----cce---EecCCeEEEECCCCeEEEEECCCCceeeEEECCCCce
Confidence            5543200000000  000 000    000   0134578888999999999999999988887765543

The alignment model contains an 8-bladed beta-propeller.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.08  E-value=0.079  Score=28.80  Aligned_cols=26  Identities=15%  Similarity=0.355  Sum_probs=19.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLR   27 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~   27 (203)
                      ++.|+|....||.|+.||.|.++.+.
T Consensus        16 ~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   16 CMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             EEEECCCCCEEEEEECCCeEEEEECC
Confidence            46777888888888888888777773

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.05  E-value=1.3  Score=34.73  Aligned_cols=159  Identities=11%  Similarity=0.129  Sum_probs=87.8

Q ss_pred             CCcEEEEeCCCCC--e----EEecCcCceEEEEeCCCCEEEEecCC---CeEEEEECCC--ceEEEeeeeCCeEEEEEec
Q psy8891          18 DRTLKIWDLRSTE--T----KFAGSSCNDLVTYDGAGTTIISGHFD---KKVRFWDFRA--EEKVRDIELHGKITSLDLS   86 (203)
Q Consensus        18 D~~v~lwdl~~~~--~----~~~~~~~~~~~~~~~~~~~l~s~~~D---~~i~vwd~~~--~~~~~~~~~~~~v~~~~~~   86 (203)
                      ++-|.+|++.+..  .    +........-+.++++.++|+++..+   |.|-.|.+..  +... .+..       .. 
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~-------~~-   85 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNR-------QT-   85 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-Eeec-------cc-
Confidence            4779999997522  1    11111222447788998899998655   5555555443  2221 1100       00 


Q ss_pred             CCCceEEEecCCceEEEEcCCCCEEEEeeCC-CeEEEEECCC-CceE---EEEec----------cceEEEEEecCCc-E
Q psy8891          87 KGTETKFAGSSCNDLVTYDGAGTTIISGHFD-KKVRFWDFRA-EEKV---RDIEL----------HGKITSLDLSKGK-Y  150 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-~~i~iWd~~~-~~~~---~~~~~----------~~~v~~~~~~~~~-~  150 (203)
                             ......+.++.+++|++++++.+. +.|.+.-++. |.+.   ..+..          ..++....+++.. +
T Consensus        86 -------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~  158 (346)
T COG2706          86 -------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY  158 (346)
T ss_pred             -------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence                   001111456778889999999885 5888888865 3221   11111          1224444555554 3


Q ss_pred             EEEeecCe------------e---------EEeeeEEEEEEcCCCEEEEec-CCCcEEEEeCCC
Q psy8891         151 YFVFAEGF------------K---------VQCDFTRAVFVVDDDYVAVGS-IDGNIYVWDCNT  192 (203)
Q Consensus       151 ~~~~~~~~------------~---------~~~~~~~~~~~~~~~~l~s~s-~d~~v~~wd~~~  192 (203)
                      +++..-+.            .         .......+.|+|++++...-. .+++|-+|..+.
T Consensus       159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             EEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            33222111            0         011224577999999876654 599999999876

>KOG1920|consensus

Probab=95.03  E-value=2.7  Score=38.33  Aligned_cols=189  Identities=13%  Similarity=0.173  Sum_probs=101.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcC--ceEEEEeCCCCEEEEecCCCeEEEEE----CCCceEE-Eee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSC--NDLVTYDGAGTTIISGHFDKKVRFWD----FRAEEKV-RDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~D~~i~vwd----~~~~~~~-~~~   74 (203)
                      ++.|..+...++-+..+|.|-+-|.++......+...  .....|+||++.++-...++++-+=+    .-..+++ ...
T Consensus        73 s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~  152 (1265)
T KOG1920|consen   73 SVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADD  152 (1265)
T ss_pred             EEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccc
Confidence            4667788888888999999999998876654433222  34457889998887777777776532    2222222 011


Q ss_pred             eeCCeEEEEEecCCCceEE-----------------Ee----cCCceEEEEcCCCCEEEE-----eeCCCeEEEEECCCC
Q psy8891          75 ELHGKITSLDLSKGTETKF-----------------AG----SSCNDLVTYDGAGTTIIS-----GHFDKKVRFWDFRAE  128 (203)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~-----------------~~----~~~~~~~~~~~~~~~l~s-----~s~d~~i~iWd~~~~  128 (203)
                      ...++...+.|......+-                 .+    ..-...++|-.||.+++.     ...-++|++||-. |
T Consensus       153 ~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g  231 (1265)
T KOG1920|consen  153 ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G  231 (1265)
T ss_pred             ccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence            1112222222222111110                 00    011134789999988887     3323899999975 3


Q ss_pred             ceEE----------EEecc---ceEEEEEecCC--cEEEEeecCeeEE----------eeeEEEEEEcCCCEEEE---ec
Q psy8891         129 EKVR----------DIELH---GKITSLDLSKG--KYYFVFAEGFKVQ----------CDFTRAVFVVDDDYVAV---GS  180 (203)
Q Consensus       129 ~~~~----------~~~~~---~~v~~~~~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~s---~s  180 (203)
                      ....          .+...   ..+.++.-.++  ...+....|..+.          ..+..++++.++..|+.   ..
T Consensus       232 ~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~  311 (1265)
T KOG1920|consen  232 ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNL  311 (1265)
T ss_pred             hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeeccc
Confidence            2111          01111   12333322222  2333333332221          12456777788888877   55


Q ss_pred             CCCcEEEEeCC
Q psy8891         181 IDGNIYVWDCN  191 (203)
Q Consensus       181 ~d~~v~~wd~~  191 (203)
                      ....|++|-..
T Consensus       312 e~~~v~lwt~~  322 (1265)
T KOG1920|consen  312 ENSLVQLWTTG  322 (1265)
T ss_pred             ccceEEEEEec
Confidence            66669999764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.72  E-value=1.7  Score=36.62  Aligned_cols=29  Identities=24%  Similarity=0.352  Sum_probs=24.2

Q ss_pred             CCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         172 DDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       172 ~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .+..++.+..||.++.+|.++|+++-..+
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence            45577778889999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1912|consensus

Probab=94.58  E-value=0.39  Score=41.50  Aligned_cols=126  Identities=17%  Similarity=0.214  Sum_probs=75.5

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC-eEEEEEecCCCceEEEecCCceEEEEcCC--CCEEEEeeCCC
Q psy8891          42 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGTETKFAGSSCNDLVTYDGA--GTTIISGHFDK  118 (203)
Q Consensus        42 ~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s~d~  118 (203)
                      +.|+|+| .++-|+ -..|-|-|.++-+.+..++.|. .|+.+-+.|-......         ++|.  .-.|+++.-.|
T Consensus        21 ~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~l---------lS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   21 ADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDL---------LSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhc---------cCccccceeEEeccccC
Confidence            4455544 666654 4578899999988888888764 4888888774322211         1211  12577777789


Q ss_pred             eEEEEECCCCceEEEEeccce-EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCC-CEEEEecCCCcEEEEeCCCceee
Q psy8891         119 KVRFWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDD-DYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      +|-+||...+..+..++.+.. +..+.+-+.+                     .+. .+|+.=..-.++.+|+..+|+..
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r---------------------d~Srd~LlaIh~ss~lvLwntdtG~k~  148 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPAR---------------------DDSRDVLLAIHGSSTLVLWNTDTGEKF  148 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeecc---------------------CcchheeEEecCCcEEEEEEccCCcee
Confidence            999999987766655544322 2111111000                     122 34445455678888888888765


Q ss_pred             eee
Q psy8891         197 AVL  199 (203)
Q Consensus       197 ~~~  199 (203)
                      =.+
T Consensus       149 Wk~  151 (1062)
T KOG1912|consen  149 WKY  151 (1062)
T ss_pred             ecc
Confidence            433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.34  E-value=0.16  Score=27.59  Aligned_cols=31  Identities=26%  Similarity=0.379  Sum_probs=25.8

Q ss_pred             eEEEEEEcCCCEEEEecCCCcEEEEeCCCcee
Q psy8891         164 FTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       164 ~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~  195 (203)
                      +..+.++|..+.||.|..||.|.++.++ ++.
T Consensus        14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl~-~qr   44 (47)
T PF12894_consen   14 VSCMSWCPTMDLIALGTEDGEVLVYRLN-WQR   44 (47)
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEECC-CcC
Confidence            4456788999999999999999999994 543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.34  E-value=0.76  Score=40.38  Aligned_cols=113  Identities=20%  Similarity=0.284  Sum_probs=62.0

Q ss_pred             CCCEEEE-ecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891          47 AGTTIIS-GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        47 ~~~~l~s-~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~  125 (203)
                      +.++|+. ......+.--|+..|+.+.++..+..+.-.++.|+...          ....  ....+.|-.++.+..||+
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~----------aqlt--~e~tflGls~n~lfriDp  559 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKF----------AQLT--NEQTFLGLSDNSLFRIDP  559 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccc----------cccC--CCceEEEECCCceEEecc
Confidence            3444444 34567888899999998877766543323333332210          0111  224455666789999999


Q ss_pred             CCCc-eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         126 RAEE-KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       126 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      |-.. .+..-..+.                   +.....+.+.+- ..+.+||.|+.+|.||+||--
T Consensus       560 R~~~~k~v~~~~k~-------------------Y~~~~~Fs~~aT-t~~G~iavgs~~G~IRLyd~~  606 (794)
T PF08553_consen  560 RLSGNKLVDSQSKQ-------------------YSSKNNFSCFAT-TEDGYIAVGSNKGDIRLYDRL  606 (794)
T ss_pred             CCCCCceeeccccc-------------------cccCCCceEEEe-cCCceEEEEeCCCcEEeeccc
Confidence            8432 111101100                   000112222222 245799999999999999943

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.27  E-value=1.7  Score=32.48  Aligned_cols=138  Identities=14%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             eEEc-CCCCEEEEEeCCCcEEEEeCCCCCeE--Eec---C-cC--ceEEEEeCCCCEEEEecCC--------CeEEEEEC
Q psy8891           3 AKFL-GDPTKVVSGSCDRTLKIWDLRSTETK--FAG---S-SC--NDLVTYDGAGTTIISGHFD--------KKVRFWDF   65 (203)
Q Consensus         3 ~~~~-~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~---~-~~--~~~~~~~~~~~~l~s~~~D--------~~i~vwd~   65 (203)
                      +.+. +++ .|+.+.. +.+.++|+.+++..  ...   . ..  ..-++++++|+..++....        +.+..++.
T Consensus        45 ~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~  122 (246)
T PF08450_consen   45 MAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP  122 (246)
T ss_dssp             EEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred             EEEEccCC-EEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence            4556 554 4455554 44556698876432  111   1 11  1235678888866665433        44666666


Q ss_pred             CCceEEEeeeeCCeEEEEEecCCCceEEEe-cCCceE------------------------------EEEcCCCCEEEEe
Q psy8891          66 RAEEKVRDIELHGKITSLDLSKGTETKFAG-SSCNDL------------------------------VTYDGAGTTIISG  114 (203)
Q Consensus        66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~------------------------------~~~~~~~~~l~s~  114 (203)
                      . ++.......-...+.+++++++..++.. .....+                              ++++.+|++.++.
T Consensus       123 ~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~  201 (246)
T PF08450_consen  123 D-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD  201 (246)
T ss_dssp             T-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred             C-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence            5 3432222222335667777777665432 221111                              3455567666655


Q ss_pred             eCCCeEEEEECCCCceEEEEecc-ceEEEEE
Q psy8891         115 HFDKKVRFWDFRAEEKVRDIELH-GKITSLD  144 (203)
Q Consensus       115 s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~  144 (203)
                      -..+.|.++|.. |+.+..+..+ ..++++.
T Consensus       202 ~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  202 WGGGRIVVFDPD-GKLLREIELPVPRPTNCA  231 (246)
T ss_dssp             ETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred             cCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence            556788888876 7776666655 3344333

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.25  E-value=1.9  Score=36.34  Aligned_cols=78  Identities=8%  Similarity=0.037  Sum_probs=47.9

Q ss_pred             CCEEEEecCCCeEEEEECCCceEEEeeeeCCe--EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891          48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGK--ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        48 ~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~  125 (203)
                      +..|+.++.++.|.-.|.++++.+........  +........        ....+ .+  .+..|+.++.|+.+.-.|.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~--------~~rg~-av--~~~~v~v~t~dg~l~ALDa  137 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDV--------VNRGV-AL--YDGKVFFGTLDARLVALDA  137 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCccccccccccc--------ccccc-eE--ECCEEEEEcCCCEEEEEEC
Confidence            45788888889999999999998876543221  110000000        00000 11  1235777788999999999


Q ss_pred             CCCceEEEEec
Q psy8891         126 RAEEKVRDIEL  136 (203)
Q Consensus       126 ~~~~~~~~~~~  136 (203)
                      ++|+.+.....
T Consensus       138 ~TGk~~W~~~~  148 (527)
T TIGR03075       138 KTGKVVWSKKN  148 (527)
T ss_pred             CCCCEEeeccc
Confidence            99998776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.10  E-value=3.9  Score=36.16  Aligned_cols=93  Identities=13%  Similarity=0.071  Sum_probs=54.0

Q ss_pred             CCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEE-E-ecCCCceEEEecCCce---E-EEEcCCCCEEEEeeCCCeEE
Q psy8891          48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSL-D-LSKGTETKFAGSSCND---L-VTYDGAGTTIISGHFDKKVR  121 (203)
Q Consensus        48 ~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~-~-~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~s~s~d~~i~  121 (203)
                      +..|+.++.++.|.-.|.++++.+........+... . ....+...........   . ..=...+..|+.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            458888889999999999999988776554322110 0 0000100000000000   0 00001234788888899999


Q ss_pred             EEECCCCceEEEEeccceE
Q psy8891         122 FWDFRAEEKVRDIELHGKI  140 (203)
Q Consensus       122 iWd~~~~~~~~~~~~~~~v  140 (203)
                      -.|.++|+....+..++.+
T Consensus       274 ALDA~TGk~~W~fg~~G~v  292 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTV  292 (764)
T ss_pred             EEECCCCCEEEEecCCCce
Confidence            9999999988777655443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.97  E-value=3  Score=34.37  Aligned_cols=120  Identities=15%  Similarity=0.256  Sum_probs=57.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEE-eCCCCCe-EEecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIW-DLRSTET-KFAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lw-dl~~~~~-~~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      ...|.+.+ .+|.-...++|+++ +...... ..... ....+.   + |..|...+.+ .|.+||+.+++.++.+....
T Consensus        73 ~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If---~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~  146 (443)
T PF04053_consen   73 SFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIF---G-GNLLGVKSSD-FICFYDWETGKLIRRIDVSA  146 (443)
T ss_dssp             EEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS-E
T ss_pred             EEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCCcccceEE---c-CcEEEEECCC-CEEEEEhhHcceeeEEecCC
Confidence            45677744 46666668999996 4432221 11111 112222   2 6666665555 89999999999888776432


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-----------ceEEEE-eccceEEEEEec
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-----------EKVRDI-ELHGKITSLDLS  146 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-----------~~~~~~-~~~~~v~~~~~~  146 (203)
                       |..+                   .|+++|..++-.+.+ ++.+.+....           .....+ +....|++..+.
T Consensus       147 -vk~V-------------------~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~  205 (443)
T PF04053_consen  147 -VKYV-------------------IWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWV  205 (443)
T ss_dssp             --EEE-------------------EE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE
T ss_pred             -CcEE-------------------EEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEE
Confidence             4443                   466666677777654 6777665433           012222 224567776666


Q ss_pred             CC
Q psy8891         147 KG  148 (203)
Q Consensus       147 ~~  148 (203)
                      .+
T Consensus       206 ~d  207 (443)
T PF04053_consen  206 ED  207 (443)
T ss_dssp             TT
T ss_pred             cC
Confidence            65

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617|consensus

Probab=93.94  E-value=0.74  Score=40.45  Aligned_cols=104  Identities=10%  Similarity=0.116  Sum_probs=64.9

Q ss_pred             eEEcCCCCEEEEEeC----CCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE-EEeee
Q psy8891           3 AKFLGDPTKVVSGSC----DRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK-VRDIE   75 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~----D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~-~~~~~   75 (203)
                      ..|+|..-.++.++.    .|+|.|| +++++..  ...+.+...++|.|..-.|++|-.-|.+.+|..++.+. .....
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t   99 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET   99 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence            357788777776664    5778777 3333321  11122223367888666788887788999998766542 11112


Q ss_pred             eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                      +..+|..                   ..|+++|..++++..=|.|.+|...
T Consensus       100 h~a~i~~-------------------l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  100 HPAPIQG-------------------LDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCcee-------------------EEecCCCCeEEEcCCCceeEEEEee
Confidence            2234444                   4466777888888888899999664

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.92  E-value=0.75  Score=36.53  Aligned_cols=64  Identities=16%  Similarity=0.108  Sum_probs=42.2

Q ss_pred             cCCCCEEEEE---------eCCCcEEEEeCCCCCeEEec--CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891           6 LGDPTKVVSG---------SCDRTLKIWDLRSTETKFAG--SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK   70 (203)
Q Consensus         6 ~~~~~~l~t~---------s~D~~v~lwdl~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~   70 (203)
                      |||++.++-.         |..+...+||+.+++.....  ........++|+++.++-. .++.|.++++.+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCe
Confidence            5788876652         33467889999886543221  1223456789999988776 568999999877743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.68  E-value=2.4  Score=32.17  Aligned_cols=138  Identities=17%  Similarity=0.178  Sum_probs=69.1

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCC--eEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee---e-CC-
Q psy8891           6 LGDPTKVVSGSCDRTLKIWDLRSTE--TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE---L-HG-   78 (203)
Q Consensus         6 ~~~~~~l~t~s~D~~v~lwdl~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~---~-~~-   78 (203)
                      ...+++|+-|..+| +.++++....  ...........+...++-+.|+.-+ |+.+.++++..-.......   . .. 
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            34678899998888 8999993221  1111111123344445445555543 4999999987654322110   0 00 


Q ss_pred             -eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-----ceEEEEeccceEEEEEecCCcEEE
Q psy8891          79 -KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-----EKVRDIELHGKITSLDLSKGKYYF  152 (203)
Q Consensus        79 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~  152 (203)
                       ....+.-.++.....        ..-...+...+.+...++|.+|.....     ...+++.++..+..+.+..+...+
T Consensus        82 ~~~~~~~~~~~v~~f~--------~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v  153 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFA--------VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICV  153 (275)
T ss_pred             cccccccccCCeeEEe--------eccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEE
Confidence             000010011110000        000122334444555679998876542     456777777777777766444433


Q ss_pred             E
Q psy8891         153 V  153 (203)
Q Consensus       153 ~  153 (203)
                      .
T Consensus       154 ~  154 (275)
T PF00780_consen  154 G  154 (275)
T ss_pred             E
Confidence            3

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3621|consensus

Probab=93.64  E-value=0.92  Score=38.72  Aligned_cols=115  Identities=11%  Similarity=0.119  Sum_probs=70.3

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEECCCceEEEeee--eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCe
Q psy8891          42 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE--LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKK  119 (203)
Q Consensus        42 ~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~  119 (203)
                      -+++..+++++-|+.-|.+.+|+-..++....-.  .++.+                   .+.+.+++..++|.|+..+.
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~-------------------~~~~vs~~e~lvAagt~~g~   99 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGIT-------------------CVRSVSSVEYLVAAGTASGR   99 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceE-------------------EEEEecchhHhhhhhcCCce
Confidence            4567778899999999999999966554322111  11222                   22345566678888999999


Q ss_pred             EEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         120 VRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       120 i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      |.++-+..+.+....                 .+......+.+.++++..++++..|++|-.-|.|.+-.+++
T Consensus       100 V~v~ql~~~~p~~~~-----------------~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  100 VSVFQLNKELPRDLD-----------------YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             EEeehhhccCCCcce-----------------eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            999877654322111                 11111111233455666667777777777777777666654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.60  E-value=2.4  Score=32.09  Aligned_cols=80  Identities=18%  Similarity=0.254  Sum_probs=44.8

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCeEE---------------ecCcCceEEEEe----CCCCEEEEecCCCeEEEEECC
Q psy8891           6 LGDPTKVVSGSCDRTLKIWDLRSTETKF---------------AGSSCNDLVTYD----GAGTTIISGHFDKKVRFWDFR   66 (203)
Q Consensus         6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~~---------------~~~~~~~~~~~~----~~~~~l~s~~~D~~i~vwd~~   66 (203)
                      .++-..|+.=+ |+.+.++++.......               .......+..+.    ..+...+.....++|.||...
T Consensus        44 l~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~  122 (275)
T PF00780_consen   44 LPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWN  122 (275)
T ss_pred             ecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEE
Confidence            45555555554 5999999987522111               011111112222    234444555566699999886


Q ss_pred             Cc-----eEEEeeeeCCeEEEEEec
Q psy8891          67 AE-----EKVRDIELHGKITSLDLS   86 (203)
Q Consensus        67 ~~-----~~~~~~~~~~~v~~~~~~   86 (203)
                      ..     ...+++.....+..+++.
T Consensus       123 ~~~~~f~~~~ke~~lp~~~~~i~~~  147 (275)
T PF00780_consen  123 DPRNSFSKLLKEISLPDPPSSIAFL  147 (275)
T ss_pred             CCcccccceeEEEEcCCCcEEEEEe
Confidence            53     455667666777777665

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2079|consensus

Probab=93.60  E-value=0.46  Score=42.45  Aligned_cols=69  Identities=17%  Similarity=0.275  Sum_probs=51.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCeE----EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           9 PTKVVSGSCDRTLKIWDLRSTETK----FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         9 ~~~l~t~s~D~~v~lwdl~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +..++.|+.-|.|-..|+.+....    .....++..++++.+|..+.-|-.+|.|.+||...++.++.+..+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            345778888888888887653221    122334566889999999999999999999999988887776544

>KOG3621|consensus

Probab=93.37  E-value=1.4  Score=37.73  Aligned_cols=111  Identities=11%  Similarity=0.144  Sum_probs=70.2

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCeE---EecCc-CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeE
Q psy8891           5 FLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSS-CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKI   80 (203)
Q Consensus         5 ~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~-~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v   80 (203)
                      +...++.++-|+.-|.+.+|+--+++..   ..+.. .......+++..++|.|+..|.|.|+-++.+.+...+      
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~------  114 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD------  114 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce------
Confidence            4557788999999999999987654321   11111 1223456677778888999999999988764321110      


Q ss_pred             EEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          81 TSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                         -+.+...+   .....++++|++++..+++|...|+|..-.+.+
T Consensus       115 ---~~t~~d~~---~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  115 ---YVTPCDKS---HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ---eecccccc---CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence               00000000   011123567888888999999999998877765

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.23  E-value=2.9  Score=31.80  Aligned_cols=108  Identities=19%  Similarity=0.123  Sum_probs=62.7

Q ss_pred             cCCCCEEEEEeCCC--cEEEEeCCCCCeEEec--CcC--ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891           6 LGDPTKVVSGSCDR--TLKIWDLRSTETKFAG--SSC--NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK   79 (203)
Q Consensus         6 ~~~~~~l~t~s~D~--~v~lwdl~~~~~~~~~--~~~--~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~   79 (203)
                      ..++..+-|.+.-|  .|+.+|+.+++.....  ...  ..-++... +....=.-.++.+.+||..+-+.+.++...++
T Consensus        53 ~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E  131 (264)
T PF05096_consen   53 LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE  131 (264)
T ss_dssp             EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS
T ss_pred             cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEEEecCCc
Confidence            35666667776656  6899999887643211  111  11223322 22333335678999999998888877776654


Q ss_pred             EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                      -..++.                     ++..|+......+++++|..+.+..+.+.
T Consensus       132 GWGLt~---------------------dg~~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  132 GWGLTS---------------------DGKRLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             --EEEE---------------------CSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             ceEEEc---------------------CCCEEEEECCccceEEECCcccceEEEEE
Confidence            444431                     34456666556799999988777666554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.22  E-value=2.9  Score=31.80  Aligned_cols=114  Identities=13%  Similarity=0.151  Sum_probs=66.5

Q ss_pred             EEEeCCCCEEEEecCCC--eEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CC
Q psy8891          42 VTYDGAGTTIISGHFDK--KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DK  118 (203)
Q Consensus        42 ~~~~~~~~~l~s~~~D~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~  118 (203)
                      +.+..++..+-|.|.-|  .|+.+|+.+++.......+.....=-+.                 .  -+..|+--.| ++
T Consensus        50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit-----------------~--~~d~l~qLTWk~~  110 (264)
T PF05096_consen   50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGIT-----------------I--LGDKLYQLTWKEG  110 (264)
T ss_dssp             EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEE-----------------E--ETTEEEEEESSSS
T ss_pred             EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEE-----------------E--ECCEEEEEEecCC
Confidence            34445667778888766  8999999999876665544332110000                 0  0123444444 67


Q ss_pred             eEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                      +..+||..+-+.+.+++.+++=-.++                          .+++.|+.+.....++++|.++.+.+++
T Consensus       111 ~~f~yd~~tl~~~~~~~y~~EGWGLt--------------------------~dg~~Li~SDGS~~L~~~dP~~f~~~~~  164 (264)
T PF05096_consen  111 TGFVYDPNTLKKIGTFPYPGEGWGLT--------------------------SDGKRLIMSDGSSRLYFLDPETFKEVRT  164 (264)
T ss_dssp             EEEEEETTTTEEEEEEE-SSS--EEE--------------------------ECSSCEEEE-SSSEEEEE-TTT-SEEEE
T ss_pred             eEEEEccccceEEEEEecCCcceEEE--------------------------cCCCEEEEECCccceEEECCcccceEEE
Confidence            88999999888887776654211111                          3556666655567788888887777776


Q ss_pred             ec
Q psy8891         199 LK  200 (203)
Q Consensus       199 ~~  200 (203)
                      ++
T Consensus       165 i~  166 (264)
T PF05096_consen  165 IQ  166 (264)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.17  E-value=4  Score=36.13  Aligned_cols=119  Identities=16%  Similarity=0.120  Sum_probs=61.2

Q ss_pred             EeCCCcEEEEeCCCCCeEEe--cCcCceEEEEeCC-------CCEEEEecCCCeEEEEECCCce-EEEeeeeCCeEEEEE
Q psy8891          15 GSCDRTLKIWDLRSTETKFA--GSSCNDLVTYDGA-------GTTIISGHFDKKVRFWDFRAEE-KVRDIELHGKITSLD   84 (203)
Q Consensus        15 ~s~D~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~-------~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~~~~v~~~~   84 (203)
                      ......|.--||+.++....  ...-..+..+.|+       +...+.|=.++.+..||.|-.. .+..-..+      .
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k------~  573 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK------Q  573 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc------c
Confidence            34456677778877664211  1111113334332       3456777788899999998643 11110010      0


Q ss_pred             ecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-e-ccceEEEEEecCCc
Q psy8891          85 LSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-E-LHGKITSLDLSKGK  149 (203)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~-~-~~~~v~~~~~~~~~  149 (203)
                      +.....        -.+.+=+.+| +||.|+.+|.||++|-. +..-++. + +..+|..++++.+.
T Consensus       574 Y~~~~~--------Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DG  630 (794)
T PF08553_consen  574 YSSKNN--------FSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADG  630 (794)
T ss_pred             cccCCC--------ceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCC
Confidence            000000        0111222333 79999999999999943 3222222 1 23567777776553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.15  E-value=4.1  Score=33.33  Aligned_cols=75  Identities=20%  Similarity=0.314  Sum_probs=37.6

Q ss_pred             eEEcCCCCEEEE--EeCCCc----EEEEeCCCCCeEEe---cCc-C--ceEEEEeCCCCEEEEecC--------------
Q psy8891           3 AKFLGDPTKVVS--GSCDRT----LKIWDLRSTETKFA---GSS-C--NDLVTYDGAGTTIISGHF--------------   56 (203)
Q Consensus         3 ~~~~~~~~~l~t--~s~D~~----v~lwdl~~~~~~~~---~~~-~--~~~~~~~~~~~~l~s~~~--------------   56 (203)
                      ++-.|+|..++|  |+.+|.    +-+.|-++.+.+..   ... .  .--+.+.|.-+.++|..+              
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d  214 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED  214 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence            445678887777  444443    45555554332211   000 0  111345666677777755              


Q ss_pred             ------CCeEEEEECCCceEEEeeeeC
Q psy8891          57 ------DKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus        57 ------D~~i~vwd~~~~~~~~~~~~~   77 (203)
                            -.++.+||+...+.++++...
T Consensus       215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  215 LEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             HHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             hhcccccCeEEEEECCCCcEeeEEecC
Confidence                  379999999999998888654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1920|consensus

Probab=93.08  E-value=7.1  Score=35.87  Aligned_cols=64  Identities=13%  Similarity=0.248  Sum_probs=41.0

Q ss_pred             ceEEcCCCCEEEE-----EeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEec---CCCeEEEEEC
Q psy8891           2 CAKFLGDPTKVVS-----GSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGH---FDKKVRFWDF   65 (203)
Q Consensus         2 ~~~~~~~~~~l~t-----~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~---~D~~i~vwd~   65 (203)
                      ++.|..||+.++.     ...-++||+||-+......  ........+.|-|.|..+++-.   .|+.|.++.-
T Consensus       200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             eEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence            4789999998877     3333899999987311111  1111124578889888887763   4557888763

>KOG2079|consensus

Probab=92.97  E-value=1  Score=40.39  Aligned_cols=70  Identities=23%  Similarity=0.415  Sum_probs=45.1

Q ss_pred             EEEEecCCCeEEEEECCCceE--EEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          50 TIISGHFDKKVRFWDFRAEEK--VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        50 ~l~s~~~D~~i~vwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      .++-|+.-|.+-..|++..-.  .+-....++|.+++++                   .+|..++.|-.+|.|.+||+..
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn-------------------~dg~~l~~G~~~G~V~v~D~~~  161 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN-------------------QDGSLLLAGLGDGHVTVWDMHR  161 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec-------------------CCCceeccccCCCcEEEEEccC
Confidence            455556666666666544211  1111223556666555                   4666888888899999999999


Q ss_pred             CceEEEEeccc
Q psy8891         128 EEKVRDIELHG  138 (203)
Q Consensus       128 ~~~~~~~~~~~  138 (203)
                      +..++.+..++
T Consensus       162 ~k~l~~i~e~~  172 (1206)
T KOG2079|consen  162 AKILKVITEHG  172 (1206)
T ss_pred             CcceeeeeecC
Confidence            88888776654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.97  E-value=5.5  Score=34.32  Aligned_cols=55  Identities=18%  Similarity=0.312  Sum_probs=41.4

Q ss_pred             ecCCCeEEEEECCCceEEEe--eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891          54 GHFDKKVRFWDFRAEEKVRD--IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        54 ~~~D~~i~vwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~  125 (203)
                      -+.-.++.|||.+.+....+  +..++.|..++|..                 .|+|+.+++.++.+.|.++--
T Consensus        47 ~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts-----------------t~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   47 DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS-----------------TPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee-----------------cCCCCEEEEEEcCcEEEEEEc
Confidence            33455899999998875433  33467888888753                 578889999999999999854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1008|consensus

Probab=92.19  E-value=0.052  Score=45.52  Aligned_cols=106  Identities=21%  Similarity=0.305  Sum_probs=62.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eEEecCcCceEEEEeC-CCCEEEEecCCCeEEEEE-CCCce-EEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWD-FRAEE-KVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd-~~~~~-~~~~~~~   76 (203)
                      +++|..+.+.+.+|...+.++++|++...  ..........-+.++| .++++.+-. |+-|-+|| .+.-+ ++..+..
T Consensus       159 s~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~  237 (783)
T KOG1008|consen  159 SVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILR  237 (783)
T ss_pred             ccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhh
Confidence            45677788889999999999999997321  1110110111133455 567877765 99999999 33222 2222211


Q ss_pred             -----CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC-CeEEEEECC
Q psy8891          77 -----HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD-KKVRFWDFR  126 (203)
Q Consensus        77 -----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-~~i~iWd~~  126 (203)
                           ...+..++++|...                  .++++...| ++|+++|+.
T Consensus       238 ~~N~~~~~l~~~aycPtrt------------------glla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  238 NENKKPKQLFALAYCPTRT------------------GLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCCCcccceeeEEeccCCc------------------chhhhhccCcceEEEeccc
Confidence                 12366677766432                  245555555 488888875

>KOG1008|consensus

Probab=91.89  E-value=0.041  Score=46.10  Aligned_cols=104  Identities=14%  Similarity=0.301  Sum_probs=60.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCeE---E--e-cCcCceEEEEeC-CCCEEEEec----CCCeEEEEECCCceEEEeeeeCC
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTETK---F--A-GSSCNDLVTYDG-AGTTIISGH----FDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~~---~--~-~~~~~~~~~~~~-~~~~l~s~~----~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      ..++.|+.+|.|-+-.++...-.   +  . ...+. ..+|.+ |.++|+.|-    .|..++|||+.+.-.       .
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct-~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt-------v  142 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCT-SLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT-------V  142 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceeccccccccc-ccccccccHHHHHhhhhhhcccCCccceecccccC-------C
Confidence            46788999999999887653211   1  1 11222 234443 445666652    356899999876511       0


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      +....-|...     .... ...++|..+.+.+++|...+.++++|+|.
T Consensus       143 Pke~~~fs~~-----~l~g-qns~cwlrd~klvlaGm~sr~~~ifdlRq  185 (783)
T KOG1008|consen  143 PKESPLFSSS-----TLDG-QNSVCWLRDTKLVLAGMTSRSVHIFDLRQ  185 (783)
T ss_pred             Cccccccccc-----cccC-ccccccccCcchhhcccccchhhhhhhhh
Confidence            1111111110     0001 11466777888999999999999999984

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.80  E-value=1.7  Score=32.20  Aligned_cols=29  Identities=10%  Similarity=0.289  Sum_probs=23.6

Q ss_pred             EEcCCCCEEEEeeCCCeEEEEECCCCceE
Q psy8891         103 TYDGAGTTIISGHFDKKVRFWDFRAEEKV  131 (203)
Q Consensus       103 ~~~~~~~~l~s~s~d~~i~iWd~~~~~~~  131 (203)
                      .+...+.+++..+.+|.+++||+.+++.+
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence            34456778999999999999999987654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.68  E-value=2.3  Score=31.42  Aligned_cols=29  Identities=10%  Similarity=0.289  Sum_probs=19.6

Q ss_pred             EEeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891          43 TYDGAGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus        43 ~~~~~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      ....++++|+.-..+|.+++||+..++.+
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence            34455667777777777777777776553

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.48  E-value=1.1  Score=23.00  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=21.5

Q ss_pred             CCCEEEEee-CCCeEEEEECCCCceEEEEecc
Q psy8891         107 AGTTIISGH-FDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus       107 ~~~~l~s~s-~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      +++.|+.+. .+++|.++|..+++.+..+...
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            455555544 4789999999888777666543

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=91.24  E-value=5.4  Score=30.47  Aligned_cols=36  Identities=14%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891         102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus       102 ~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      +..+|||..|++...+|+|.+|++.+=...++....
T Consensus       235 mSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  235 MSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             EEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            457889999999999999999999876655555443

>PHA02713 hypothetical protein; Provisional

Probab=91.11  E-value=8.9  Score=32.70  Aligned_cols=26  Identities=8%  Similarity=0.060  Sum_probs=19.9

Q ss_pred             cCCCEEEEecCCC--cEEEEeCCCceee
Q psy8891         171 VDDDYVAVGSIDG--NIYVWDCNTEQVE  196 (203)
Q Consensus       171 ~~~~~l~s~s~d~--~v~~wd~~~~~~~  196 (203)
                      .+++..+.|+.|+  .+..||..+.+=.
T Consensus       511 ~~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        511 HDNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             ECCEEEEEeeecceeehhhcCccccccc
Confidence            3777888999888  7888888776543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=90.59  E-value=6.9  Score=30.59  Aligned_cols=84  Identities=13%  Similarity=0.133  Sum_probs=50.1

Q ss_pred             CceEEcCCCCEEEEEeCC-CcEEEEeCCC--C----Ce-EEec---CcCceEEEEeCCCCEEEEecCCC-eEEEEECCCc
Q psy8891           1 MCAKFLGDPTKVVSGSCD-RTLKIWDLRS--T----ET-KFAG---SSCNDLVTYDGAGTTIISGHFDK-KVRFWDFRAE   68 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D-~~v~lwdl~~--~----~~-~~~~---~~~~~~~~~~~~~~~l~s~~~D~-~i~vwd~~~~   68 (203)
                      +.++||||++.|+.+... +.|.-|++..  .    +. ....   ....+-.+.+.++++-+++-++| .|.+|+.. +
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence            468999999888776554 6677776652  1    11 1111   11123355666776555655655 89999987 7


Q ss_pred             eEEEeeeeC-CeEEEEEe
Q psy8891          69 EKVRDIELH-GKITSLDL   85 (203)
Q Consensus        69 ~~~~~~~~~-~~v~~~~~   85 (203)
                      +.+..+..+ ..+.+++|
T Consensus       245 ~l~~~i~lP~~~~t~~~F  262 (307)
T COG3386         245 KLLGEIKLPVKRPTNPAF  262 (307)
T ss_pred             cEEEEEECCCCCCccceE
Confidence            877777665 33444333

>KOG2395|consensus

Probab=90.59  E-value=3.3  Score=34.57  Aligned_cols=109  Identities=19%  Similarity=0.338  Sum_probs=61.8

Q ss_pred             EEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891          50 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        50 ~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                      +|.++..-..++=-|+..|+.+-+...+..|.-+++.|+...          ..+.+. +.|+ |-.|+.|.-||+|-..
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~----------~Ql~~e-~Tlv-GLs~n~vfriDpRv~~  415 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKF----------AQLTSE-QTLV-GLSDNSVFRIDPRVQG  415 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcch----------hccccc-ccEE-eecCCceEEecccccC
Confidence            445566666777788888888777776666666666665431          111222 2333 4557888889988221


Q ss_pred             e--EEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         130 K--VRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       130 ~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      .  +...+.+.                   +....++.+.+- ..+.+++.||.+|-||+||-
T Consensus       416 ~~kl~~~q~kq-------------------y~~k~nFsc~aT-T~sG~IvvgS~~GdIRLYdr  458 (644)
T KOG2395|consen  416 KNKLAVVQSKQ-------------------YSTKNNFSCFAT-TESGYIVVGSLKGDIRLYDR  458 (644)
T ss_pred             cceeeeeeccc-------------------cccccccceeee-cCCceEEEeecCCcEEeehh
Confidence            1  11111110                   000111211111 24579999999999999996

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=90.56  E-value=6.1  Score=29.87  Aligned_cols=174  Identities=12%  Similarity=0.150  Sum_probs=80.2

Q ss_pred             eEEcCCCCEEEE-EeCCCcEEEEeCCCCCeE----EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           3 AKFLGDPTKVVS-GSCDRTLKIWDLRSTETK----FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         3 ~~~~~~~~~l~t-~s~D~~v~lwdl~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +.|.|+...|++ ....+.|.-.+++. +..    +.+..-...+.+..++.++++--.++.+.++++.........   
T Consensus        27 LTy~pd~~tLfaV~d~~~~i~els~~G-~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~---  102 (248)
T PF06977_consen   27 LTYNPDTGTLFAVQDEPGEIYELSLDG-KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR---  102 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E---
T ss_pred             cEEcCCCCeEEEEECCCCEEEEEcCCC-CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch---
Confidence            578898765554 66677776667653 321    222222345677777778887777999999988443211000   


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC---CceEEEEeccceEEEEEecCCcEEEEe
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA---EEKVRDIELHGKITSLDLSKGKYYFVF  154 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~  154 (203)
                      ..+..+.+....    .+...-.=++|++.++.|+.+-...-.+++.++.   ...+.......      +..       
T Consensus       103 ~~~~~~~l~~~~----~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~------~~~-------  165 (248)
T PF06977_consen  103 ADVQKISLGFPN----KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD------LDD-------  165 (248)
T ss_dssp             EEEEEEE---S-------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH------HH--------
T ss_pred             hhceEEeccccc----CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc------ccc-------
Confidence            011222211110    0011112356777766666665555555554432   11111110000      000       


Q ss_pred             ecCeeEEeeeEEEEEEcC-CCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         155 AEGFKVQCDFTRAVFVVD-DDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                        ......++..+.+.|. +.+++-+...+.|...| .+|+++..+.
T Consensus       166 --~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~  209 (248)
T PF06977_consen  166 --DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS  209 (248)
T ss_dssp             --HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred             --ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence              0011223445566665 45667777888888888 5578777653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.24  E-value=0.75  Score=38.85  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=25.4

Q ss_pred             CCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         172 DDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       172 ~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                      +..++++-+.|+++|+||++++++++++
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            6689999999999999999999997765

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.62  E-value=8.1  Score=29.89  Aligned_cols=50  Identities=20%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             EEcCCCCEEEEEeCC-----CcEEEEeCCCCCeE-----EecCcCceEEEEeCCCCEEEEe
Q psy8891           4 KFLGDPTKVVSGSCD-----RTLKIWDLRSTETK-----FAGSSCNDLVTYDGAGTTIISG   54 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D-----~~v~lwdl~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~   54 (203)
                      .|||||.+|+..-.|     |.|-+||.+..-..     ..+..+ .-+.+.+||+.|+.+
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGp-Hev~lm~DGrtlvva  179 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGP-HEVTLMADGRTLVVA  179 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCc-ceeEEecCCcEEEEe
Confidence            489999999875444     56899998752221     111111 125567788877654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=88.78  E-value=1.4  Score=23.39  Aligned_cols=27  Identities=30%  Similarity=0.463  Sum_probs=16.3

Q ss_pred             ceEEcCCCC---EEEEEeCCCcEEEEeCCC
Q psy8891           2 CAKFLGDPT---KVVSGSCDRTLKIWDLRS   28 (203)
Q Consensus         2 ~~~~~~~~~---~l~t~s~D~~v~lwdl~~   28 (203)
                      +++|+|++.   .|+-+-.-+.|-++|+++
T Consensus         5 ~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    5 CCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             EEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            466776443   555555566677777663

It contains a characteristic DLL sequence motif.

>smart00564 PQQ beta-propeller repeat

Probab=88.62  E-value=1.3  Score=21.46  Aligned_cols=27  Identities=37%  Similarity=0.539  Sum_probs=22.0

Q ss_pred             CCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         173 DDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       173 ~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                      +..++.++.++.++..|.++|+.+-.+
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            346788899999999999999887543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG4649|consensus

Probab=88.12  E-value=10  Score=29.02  Aligned_cols=67  Identities=18%  Similarity=0.093  Sum_probs=45.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCeE--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           9 PTKVVSGSCDRTLKIWDLRSTETK--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         9 ~~~l~t~s~D~~v~lwdl~~~~~~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      |..++-|...|.+.+-+..+++..  +.. .........++++..+..|+.|++...-|.++..++...+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            455777777777777777776421  111 1111112346788899999999999999999888765543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.08  E-value=1.7  Score=36.69  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=26.1

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891         107 AGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus       107 ~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      +..+|++.+.|+++|+||+.++.++....+.
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence            4568999999999999999999997766443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=87.51  E-value=8.1  Score=33.22  Aligned_cols=53  Identities=11%  Similarity=0.023  Sum_probs=28.4

Q ss_pred             ceEEcCCCCEEEEEe------CCC--cEEEEeCCCCCe-EEecCcCceEEEEeCCCCEEEEec
Q psy8891           2 CAKFLGDPTKVVSGS------CDR--TLKIWDLRSTET-KFAGSSCNDLVTYDGAGTTIISGH   55 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s------~D~--~v~lwdl~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~   55 (203)
                      +.+++|||+.++..-      .|.  .+.+++...... ...+. ...--.|+|++..|++.+
T Consensus       354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~-~~t~PsWspDG~~lw~v~  415 (591)
T PRK13616        354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH-SLTRPSWSLDADAVWVVV  415 (591)
T ss_pred             cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC-CCCCceECCCCCceEEEe
Confidence            356899999876554      244  444445433222 22221 122246788877766664

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.36  E-value=3  Score=22.13  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=22.3

Q ss_pred             EEEEEEcCC---CEEEEecCCCcEEEEeCCC
Q psy8891         165 TRAVFVVDD---DYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       165 ~~~~~~~~~---~~l~s~s~d~~v~~wd~~~  192 (203)
                      ..+.|+|.+   ++|+.+..-+.|.++|+++
T Consensus         4 R~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    4 RCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             EEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            345677654   5899999999999999984

It contains a characteristic DLL sequence motif.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.74  E-value=2.9  Score=21.35  Aligned_cols=29  Identities=17%  Similarity=0.178  Sum_probs=16.7

Q ss_pred             CCCEEEEe-cCCCeEEEEECCCceEEEeee
Q psy8891          47 AGTTIISG-HFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus        47 ~~~~l~s~-~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      +++.|+.+ -.+++|-++|+.+.+.+..+.
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            44444443 346677777776666555443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF01011 PQQ: PQQ enzyme repeat family

Probab=86.02  E-value=1.9  Score=21.95  Aligned_cols=26  Identities=35%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             EEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         175 YVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       175 ~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .++.++.||.|+-.|.++|+.+=.++
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~   27 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQ   27 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeee
Confidence            34566999999999999999876553

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=84.26  E-value=21  Score=29.07  Aligned_cols=71  Identities=8%  Similarity=0.090  Sum_probs=45.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---------------Eec-------------------------------
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---------------FAG-------------------------------   35 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---------------~~~-------------------------------   35 (203)
                      .+.|.++...|+.|-..|.|-+|.....+..               +.+                               
T Consensus         6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~   85 (395)
T PF08596_consen    6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK   85 (395)
T ss_dssp             EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---
T ss_pred             EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc
Confidence            4678899899999999999999975321100               000                               


Q ss_pred             CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891          36 SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD   73 (203)
Q Consensus        36 ~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~   73 (203)
                      ......+..+ +=..++.|..+|.+-|.|+|.+..+..
T Consensus        86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence            0001111222 334789999999999999998887654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=83.64  E-value=23  Score=29.18  Aligned_cols=66  Identities=15%  Similarity=0.193  Sum_probs=36.8

Q ss_pred             EEcCCCCEEE-EEeCCCcEEEE--eCCCCCe--EEecCcCceEEEEeCCCCEEEEecCC-Ce--EEEEECCCce
Q psy8891           4 KFLGDPTKVV-SGSCDRTLKIW--DLRSTET--KFAGSSCNDLVTYDGAGTTIISGHFD-KK--VRFWDFRAEE   69 (203)
Q Consensus         4 ~~~~~~~~l~-t~s~D~~v~lw--dl~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~D-~~--i~vwd~~~~~   69 (203)
                      .|+|||+.++ +.+..|.-.+|  |++....  ..........-.++|+++.++..+.. |.  |-+.|+..+.
T Consensus       288 s~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         288 SWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             cCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            4789999765 55566665555  5544321  22222222234578999987776643 33  5555555444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=81.97  E-value=25  Score=28.34  Aligned_cols=108  Identities=16%  Similarity=0.114  Sum_probs=66.9

Q ss_pred             ceEEcCCCCE-EEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecC---CCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPTK-VVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHF---DKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~-l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~---D~~i~vwd~~~~~~~~~~   74 (203)
                      .+..++++.+ .++...++.|.+.|+.+.+....   +. ...-+.++++++.++.+..   ++++-+.|-.+.+.+.+.
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            3566777774 45565679999999776543221   22 2233667888876666654   688888888887776653


Q ss_pred             eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCCCc
Q psy8891          75 ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEE  129 (203)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~~~  129 (203)
                      .....-..                   +.++|+|..++.+. .+++|.+.|.....
T Consensus       157 ~vG~~P~~-------------------~a~~p~g~~vyv~~~~~~~v~vi~~~~~~  193 (381)
T COG3391         157 PVGNTPTG-------------------VAVDPDGNKVYVTNSDDNTVSVIDTSGNS  193 (381)
T ss_pred             ecCCCcce-------------------EEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence            32111122                   34566666555554 67899999866543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=81.68  E-value=20  Score=27.02  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=24.0

Q ss_pred             EEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         167 AVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       167 ~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +...|+|+.|+.+..+  -.|||..+.+.++.++
T Consensus       175 ~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  175 VHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP  206 (243)
T ss_pred             EEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence            4456899999887764  5667888888877765

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.39  E-value=29  Score=28.07  Aligned_cols=67  Identities=18%  Similarity=0.244  Sum_probs=42.2

Q ss_pred             eEEcCCCCEEE-EEeCCCc----EEEEeCCCCCeEEec-CcCc-eEEEEeCCCCEEEEecCCC-----------eEEEEE
Q psy8891           3 AKFLGDPTKVV-SGSCDRT----LKIWDLRSTETKFAG-SSCN-DLVTYDGAGTTIISGHFDK-----------KVRFWD   64 (203)
Q Consensus         3 ~~~~~~~~~l~-t~s~D~~----v~lwdl~~~~~~~~~-~~~~-~~~~~~~~~~~l~s~~~D~-----------~i~vwd   64 (203)
                      .+++||+++++ +-+..|.    +++.|+.+++..... .... ..+.|.++++.++....|.           .|+.|+
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~  208 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK  208 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence            46799999876 3344444    999999987653221 1111 1277888888766654333           478888


Q ss_pred             CCCce
Q psy8891          65 FRAEE   69 (203)
Q Consensus        65 ~~~~~   69 (203)
                      +.+..
T Consensus       209 ~gt~~  213 (414)
T PF02897_consen  209 LGTPQ  213 (414)
T ss_dssp             TTS-G
T ss_pred             CCCCh
Confidence            87654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=80.37  E-value=26  Score=27.54  Aligned_cols=91  Identities=16%  Similarity=0.141  Sum_probs=52.3

Q ss_pred             CCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCce-EEEEcCC--CCEEEEeeCCCeEEEE
Q psy8891          47 AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCND-LVTYDGA--GTTIISGHFDKKVRFW  123 (203)
Q Consensus        47 ~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~l~s~s~d~~i~iW  123 (203)
                      ++++-++=+..|.+..+|.++++........+-...++|.  +..++.+.+... -..|++-  ...+.  ....-|.+-
T Consensus       212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~--~~~CGv~vi  287 (335)
T TIGR03032       212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLD--ALGCGVAVI  287 (335)
T ss_pred             CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhh--hhcccEEEE
Confidence            5667777788889999998777654444445556666666  444444432211 0111110  00011  012457788


Q ss_pred             ECCCCceEEEEeccceEE
Q psy8891         124 DFRAEEKVRDIELHGKIT  141 (203)
Q Consensus       124 d~~~~~~~~~~~~~~~v~  141 (203)
                      |+++|..+..+.+.+.|.
T Consensus       288 dl~tG~vv~~l~feg~v~  305 (335)
T TIGR03032       288 DLNSGDVVHWLRFEGVIE  305 (335)
T ss_pred             ECCCCCEEEEEEeCCcee
Confidence            999999888887775543

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		7e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		7e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		7e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		5e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		8e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-04
2h9l_A	329	Wdr5delta23 Length = 329		1e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		4e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		8e-04

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 11  KVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTY---DGAGTTIISGHFDKKVRFWDFRA 67
           K+VSGS DRT++IWDLR+ +     S  + + T     G G  I +G  D+ VR WD   
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS-- 236
Query: 68  EEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 127
                  E    +  LD    + T    S  + + T DG   +++SG  D+ V+ W+ + 
Sbjct: 237 -------ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQN 287
Query: 128 EEKVRD 133
                D
Sbjct: 288 ANNKSD 293

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 7   GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFW 63
            D    +S S D+TL++WD+ + ET  +F G   + + V  D   + IISG  DK ++ W
Sbjct: 75  ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 64  --------------DFRAEEKVRDIELHGKITSLDLSKGT--------------ETKFAG 95
                         D+ ++ +V   E     +   +S G               E  F G
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 96  SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
            + N + +T    GT I S   D ++  W+  A++ +  +    ++ SL  S  +Y+   
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 155 --AEGFKV 160
             A G KV
Sbjct: 255 ATATGIKV 262

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 7   GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFW 63
            D    +S S D+TL++WD+ + ET  +F G   + + V  D   + IISG  DK ++ W
Sbjct: 75  ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 64  DFRAE------------EKVRDIELHGK---------------ITSLDLSK-GTETKFAG 95
             + +             +VR +                    + + +L++   E  F G
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 96  SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
            + N + +T    GT I S   D ++  W+  A++ +  +    ++ SL  S  +Y+   
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 155 --AEGFKV 160
             A G KV
Sbjct: 255 ATATGIKV 262

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 7   GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFW 63
            D    +S S D+TL++WD+ + ET  +F G   + + V  D   + IISG  DK ++ W
Sbjct: 75  ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 64  --------------DFRAEEKVRDIELHGKITSLDLSKGT--------------ETKFAG 95
                         D+ ++ +V   E     +   +S G               E  F G
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 96  SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
            + N + +T    GT I S   D ++  W+  A++ +  +    ++ SL  S  +Y+   
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 155 --AEGFKV 160
             A G KV
Sbjct: 255 ATATGIKV 262

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 7   GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFW 63
            D    +S S D+TL++WD+ + ET  +F G   + + V  D   + IISG  DK ++ W
Sbjct: 69  ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 64  --------------DFRAEEKVRDIELHGKITSLDLSKGT--------------ETKFAG 95
                         D+ ++ +V   E     +   +S G               E  F G
Sbjct: 129 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 188
Query: 96  SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
            + N + +T    GT I S   D ++  W+  A++ +  +    ++ SL  S  +Y+   
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 248
Query: 155 --AEGFKV 160
             A G KV
Sbjct: 249 ATATGIKV 256

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 7   GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCNDL-VTYDGAGTTIISGHFDKKVRFW 63
            D    +S S D+TL++WD+ + ET  +F G   + + V  D   + IISG  DK ++ W
Sbjct: 75  ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 64  --------------DFRAEEKVRDIELHGKITSLDLSKGT--------------ETKFAG 95
                         D+ ++ +V   E     +   +S G               E  F G
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194
Query: 96  SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
            + N + +T    GT I S   D ++  W+  A++ +  +    ++ SL  S  +Y+   
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 155 --AEGFKV 160
             A G KV
Sbjct: 255 ATATGIKV 262

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 80/220 (36%), Gaps = 64/220 (29%)
Query: 2   CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGA-------GTTIISG 54
           C +F G+  ++VSGS D TLK+W      +   G     LV + G           IISG
Sbjct: 124 CLQFCGN--RIVSGSDDNTLKVW------SAVTGKCLRTLVGHTGGVWSSQMRDNIIISG 175
Query: 55  HFDKKVRFWDFRAEE----------KVRDIELHGK------------ITSLDLSKGTETK 92
             D+ ++ W+    E           VR + LH K            +  ++  +     
Sbjct: 176 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235
Query: 93  FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYF 152
               +    V YDG    ++SG +D  V+ WD   E  +  ++ H           + Y 
Sbjct: 236 MGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGH---------TNRVYS 284
Query: 153 VFAEGFKVQCDFTRXXXXXXXXXXXXGSIDGNIYVWDCNT 192
           +  +G  V                  GS+D +I VWD  T
Sbjct: 285 LQFDGIHV----------------VSGSLDTSIRVWDVET 308

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 29/134 (21%)
Query: 8   DPTKVVSGSCDRTLKIWDLRSTET--KFAGSS-----CNDLVTYDGAGTTIISGHFDKKV 60
           D   +VS S D+TLKIWD+ S +      G S     CN    ++     I+SG FD+ V
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESV 134
Query: 61  RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 120
           R WD +    ++ +  H    S                   V ++  G+ I+S  +D   
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVS------------------AVHFNRDGSLIVSSSYDGLC 176
Query: 121 RFWDFRAEEKVRDI 134
           R WD  + + ++ +
Sbjct: 177 RIWDTASGQCLKTL 190

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 29/134 (21%)
Query: 8   DPTKVVSGSCDRTLKIWDLRSTET--KFAGSS-----CNDLVTYDGAGTTIISGHFDKKV 60
           D   +VS S D+TLKIWD+ S +      G S     CN    ++     I+SG FD+ V
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESV 134
Query: 61  RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 120
           R WD +    ++ +  H    S                   V ++  G+ I+S  +D   
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVS------------------AVHFNRDGSLIVSSSYDGLC 176
Query: 121 RFWDFRAEEKVRDI 134
           R WD  + + ++ +
Sbjct: 177 RIWDTASGQCLKTL 190

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 2   CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDK 58
           C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D 
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 59  KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
             R WD  + + ++        T +D      +          V +   G  I++   D 
Sbjct: 175 LCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLDN 217
Query: 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXX 178
            ++ WD+   + ++    H         K + Y +FA  F V                  
Sbjct: 218 TLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIVS 257
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
           GS D  +Y+W+  T+++   L+
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQ 279

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 34/188 (18%)
Query: 7   GDPTKVVSGSCDRTLKIWDLRSTET--KFAGSSCN-DLVTYDGAGTTIISGHFDKKVRFW 63
            D    +S S D+TL++WD+ + ET  +F G   +   V  D   + IISG  DK ++ W
Sbjct: 75  ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 64  --------------DFRAEEKVRDIELHGKITSLDLSKGT--------------ETKFAG 95
                         D+ ++ +V   E     +   +S G               E  F G
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIG 194
Query: 96  SSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
            + N + +T    GT I S   D ++  W+  A++    +    ++ SL  S  +Y+   
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 155 --AEGFKV 160
             A G KV
Sbjct: 255 ATATGIKV 262

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 5   FLGDPTKVVSGSCDRTLKIWDLRSTE--TKFAGSS----CNDLVTYDGAGTTIISGHFDK 58
           F     ++++ S D T  +WD+ S +    F G      C DL   +  G T +SG  DK
Sbjct: 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE-TGNTFVSGGCDK 220
Query: 59  KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
           K   WD R+ + V+  E H                   S  + V Y  +G    SG  D 
Sbjct: 221 KAMVWDMRSGQCVQAFETH------------------ESDVNSVRYYPSGDAFASGSDDA 262
Query: 119 KVRFWDFRAEEKV 131
             R +D RA+ +V
Sbjct: 263 TCRLYDLRADREV 275

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 12  VVSGSCDRTLKIWDLRST------ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 65
           +VSGS DRT+++WD++        E   +   C D+V Y      I++G  D  +  W  
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKL 234
Query: 66  RAEEKVRDIELHGKITSLDLSKGTETK---FAG---SSCNDLVTYDGAGTTIISGHFDKK 119
             E  V D   HG+     L   T  +   F G        + T  G G  ++SG +D  
Sbjct: 235 PKESSVPD---HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 291
Query: 120 VRFWD 124
           +  WD
Sbjct: 292 LIVWD 296

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 24/161 (14%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS----TETKFAGSSCNDLVTYDGA--GTTIISG 54
           +   F  D  ++VSG  D  L++W+++     T ++ A +     V +  +     I+SG
Sbjct: 113 LSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 55  HFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISG 114
            +D  V+ WD      V D++ H             T +  S     VT    G+   S 
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGH-------------TNYVTS-----VTVSPDGSLCASS 214
Query: 115 HFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA 155
             D   R WD    E + ++     I  +  S  +Y+   A
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAA 255

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 12  VVSGSCDRTLKIWDLRST------ETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF 65
           +VSGS DRT+++WD++        E   +   C D+V Y      I++G  D  +  W  
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKL 234
Query: 66  RAEEKVRDIELHGKITSLDLSKGTETK---FAG---SSCNDLVTYDGAGTTIISGHFDKK 119
             E  V D   HG+     L   T  +   F G        + T  G G  ++SG +D  
Sbjct: 235 PKESSVPD---HGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNT 291
Query: 120 VRFWD 124
           +  WD
Sbjct: 292 LIVWD 296

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 177 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 219
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 220 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 259
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 188 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 230
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 231 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 270
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKLQ 293

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 174 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 216
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 256
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 167 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 209
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 210 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 249
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQ 272

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 174 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 216
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 256
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 170 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 212
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 213 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSVT----------GGKWIV 252
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 253 SGSEDNLVYIWNLQTKEIVQKLQ 275

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 171 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 213
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 214 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 253
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 177 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 219
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 220 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 259
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 171 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 213
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 214 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 253
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 2   CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDK 58
           C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D 
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 59  KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
             R WD  + + ++        T +D      +          V +   G  I++   D 
Sbjct: 178 LCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLDN 220
Query: 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXX 178
            ++ WD+   + ++    H         K + Y +FA  F V                  
Sbjct: 221 TLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIVS 260
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
           GS D  +Y+W+  T+++   L+
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 174 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 216
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 256
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFD 57
            C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
              R WD  + + ++        T +D      +          V +   G  I++   D
Sbjct: 172 GLCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLD 214
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXX 177
             ++ WD+   + ++    H         K + Y +FA  F V                 
Sbjct: 215 NTLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIV 254
Query: 178 XGSIDGNIYVWDCNTEQVEAVLK 200
            GS D  +Y+W+  T+++   L+
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKLQ 277

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 2   CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDK 58
           C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D 
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 59  KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
             R WD  + + ++        T +D      +          V +   G  I++   D 
Sbjct: 177 LCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLDN 219
Query: 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXX 178
            ++ WD+   + ++    H         K + Y +FA  F V                  
Sbjct: 220 TLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIVS 259
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
           GS D  +Y+W+  T+++   L+
Sbjct: 260 GSEDNLVYIWNLQTKEIVQKLQ 281

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 2   CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDK 58
           C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D 
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 59  KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
             R WD  + + ++        T +D      +          V +   G  I++   D 
Sbjct: 196 LCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLDN 238
Query: 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXX 178
            ++ WD+   + ++    H         K + Y +FA  F V                  
Sbjct: 239 TLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIVS 278
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
           GS D  +Y+W+  T+++   L+
Sbjct: 279 GSEDNLVYIWNLQTKEIVQKLQ 300

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 2   CAKFLGDPTKVVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDK 58
           C  F      +VSGS D +++IWD+++    +T  A S     V ++  G+ I+S  +D 
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 59  KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
             R WD  + + ++        T +D      +          V +   G  I++   D 
Sbjct: 194 LCRIWDTASGQCLK--------TLIDDDNPPVS---------FVKFSPNGKYILAATLDN 236
Query: 119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXX 178
            ++ WD+   + ++    H         K + Y +FA  F V                  
Sbjct: 237 TLKLWDYSKGKCLKTYTGH---------KNEKYCIFAN-FSV----------TGGKWIVS 276
Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
           GS D  +Y+W+  T+++   L+
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKLQ 298

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 83/227 (36%), Gaps = 72/227 (31%)
Query: 12  VVSGSCDRTLKIWDLRS---TETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE 68
           +VS S D+T+K+W++++    +T         +V  +  GT I S   D+ VR W    +
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 69  EKVRDIELHGKI------------TSLDLSKGTETKFAGSSCNDL--------------- 101
           E   ++  H  +            +S+  + G+ETK +G     L               
Sbjct: 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 102 -----------------VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSL 143
                            V +   G  I+S   DK +R WD++ +  ++ +  H   +TSL
Sbjct: 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386
Query: 144 DLSKGKYYFVFAEGFKVQCDFTRXXXXXXXXXXXXGSIDGNIYVWDC 190
           D  K   Y V                         GS+D  + VW+C
Sbjct: 387 DFHKTAPYVV------------------------TGSVDQTVKVWEC 409

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 8   DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTI-----------ISGHF 56
           D +KV + SCD+T K+WDL S +          +  +D    TI           ++G +
Sbjct: 97  DGSKVFTASCDKTAKMWDLSSNQAI-------QIAQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 57  DKKVRFWDFRAEEKVRDIELHGKITSLDL 85
           DK ++FWD R+   +  ++L  +    D+
Sbjct: 150 DKTLKFWDTRSSNPMMVLQLPERCYCADV 178

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 26/165 (15%)
Query: 4   KFLGDPTKVVSGSCDRTLKIWDLRSTETKF------AGSSCNDLVTYDGAGTTIISGHFD 57
           K L D   ++ G    TL IWDL +   +       +  +C  L     +     S   D
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSD 162
Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD 117
             +  WD   +  VR  + H                 G+SC D+      GT + +G  D
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTD---------------GASCIDI---SNDGTKLWTGGLD 204
Query: 118 KKVRFWDFRAEEKVRDIELHGKITSLDLSK-GKYYFVFAEGFKVQ 161
             VR WD R   +++  +   +I SL     G++  V  E   V+
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.93
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.91
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.9
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.9
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.9
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.9
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.9
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.9
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.88
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.88
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.88
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.88
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.87
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.87
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.87
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.86
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.86
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.85
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.84
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.83
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
2pm7_B	297	Protein transport protein SEC13, protein transport	99.81
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.8
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.76
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.75
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.74
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.74
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.71
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.71
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.69
3jro_A	753	Fusion protein of protein transport protein SEC13	99.68
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.68
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.68
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.67
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.67
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.66
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.64
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.64
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.64
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.62
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.58
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.58
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.57
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.57
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.56
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.56
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.55
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.54
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.52
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.48
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.48
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.47
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.46
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.42
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.4
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.38
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.36
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.35
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.34
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.33
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.33
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.33
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.31
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.31
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.28
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.27
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.22
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.21
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.17
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.16
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.16
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.13
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.12
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.12
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.1
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.1
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.08
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.05
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.03
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.0
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.96
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.96
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.94
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.93
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.93
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.92
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.87
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.87
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.86
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.84
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.81
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.8
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.78
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.76
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.75
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.73
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.71
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.62
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.62
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.59
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.53
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.5
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.49
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.42
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.42
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.41
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.4
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.39
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.36
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.35
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.33
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.32
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.26
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.2
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.19
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.18
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.15
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.11
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.02
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.01
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.98
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.94
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.91
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.86
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.85
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.82
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.58
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.57
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.57
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.49
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.28
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.23
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.14
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.89
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.87
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.73
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.37
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	95.75
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.72
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.7
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.63
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.4
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.38
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.31
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.67
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.45
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	93.78
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	93.13
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	91.5
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	91.11
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	89.33
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.11
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	89.08
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	88.39
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.61
3v65_B	386	Low-density lipoprotein receptor-related protein;	87.36
3kya_A	496	Putative phosphatase; structural genomics, joint c	86.69
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	86.53
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	86.02
2p4o_A	306	Hypothetical protein; putative lactonase, structur	85.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	85.37
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	85.23
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	83.12
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	82.48
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.39
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	81.82
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	80.44

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.3e-30  Score=196.91  Aligned_cols=201  Identities=20%  Similarity=0.283  Sum_probs=155.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      +++|+|++.+|+||+.|++|++||+.+++...  . +......+.+.+++++|++|+.|++|++||+++++.+..+..| 
T Consensus        18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~   97 (304)
T 2ynn_A           18 GIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP   97 (304)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCC
Confidence            68999999999999999999999998865432  2 2233455778899999999999999999999999988888766 


Q ss_pred             CeEEEEEecCCCceEEEecCCce------------------------EEEEcC-CCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCND------------------------LVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~-~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      +.|.+++++|++..++.++....                        .+.|+| ++..|++++.|++|++||++++.+..
T Consensus        98 ~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~  177 (304)
T 2ynn_A           98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF  177 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE
T ss_pred             CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence            56999999999888877654432                        246777 57899999999999999998877655


Q ss_pred             EEecc--ceEEEEEecC--CcEEEEeec-C-----------ee------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         133 DIELH--GKITSLDLSK--GKYYFVFAE-G-----------FK------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       133 ~~~~~--~~v~~~~~~~--~~~~~~~~~-~-----------~~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      .+...  ..+..+.+.+  +..+++... .           ..      +...+..+.|+|++.+|++|+.|++|++||.
T Consensus       178 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            55432  3466666543  322332221 1           00      1124556789999999999999999999999


Q ss_pred             CCceeeeeeccC
Q psy8891         191 NTEQVEAVLKDM  202 (203)
Q Consensus       191 ~~~~~~~~~~~~  202 (203)
                      ++++++++++.|
T Consensus       258 ~~~~~~~~~~~~  269 (304)
T 2ynn_A          258 STYKVEKTLNVG  269 (304)
T ss_dssp             TTCCEEEEECCS
T ss_pred             CCCceeeeccCC
Confidence            999999998765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=3.1e-29  Score=193.44  Aligned_cols=191  Identities=22%  Similarity=0.355  Sum_probs=147.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-C
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-H   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-~   77 (203)
                      +++|+|++++|+|||.|++||+||+.+++..  +. +......+.++|++++|+||+.|++|++||++.. ++..+.. .
T Consensus        70 ~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~  148 (319)
T 3frx_A           70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHN  148 (319)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCS
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccC
Confidence            5789999999999999999999999987653  22 2233455778999999999999999999999754 4444443 3


Q ss_pred             CeEEEEEecCCCc------eEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCC
Q psy8891          78 GKITSLDLSKGTE------TKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        78 ~~v~~~~~~~~~~------~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~  128 (203)
                      ..|..+.+.|...      .++.++..                       ...+.|+|+|++|++++.|++|++||++++
T Consensus       149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            5688888877432      34433322                       123678999999999999999999999999


Q ss_pred             ceEEEEeccceEEEEEecCCcEEEEeecCeeE-------------------------EeeeEEEEEEcCCCEEEEecCCC
Q psy8891         129 EKVRDIELHGKITSLDLSKGKYYFVFAEGFKV-------------------------QCDFTRAVFVVDDDYVAVGSIDG  183 (203)
Q Consensus       129 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~l~s~s~d~  183 (203)
                      +++..+..+..+.++.++++...++......+                         ...+..++|+|++++|++|+.|+
T Consensus       229 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          229 KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             EEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence            99999888888999999988766554322110                         11245678999999999999999


Q ss_pred             cEEEEeCCCc
Q psy8891         184 NIYVWDCNTE  193 (203)
Q Consensus       184 ~v~~wd~~~~  193 (203)
                      +|++||+.++
T Consensus       309 ~i~vWd~~t~  318 (319)
T 3frx_A          309 VIRVWQVMTA  318 (319)
T ss_dssp             CEEEEEEEEC
T ss_pred             eEEEEEEeec
Confidence            9999998764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.9e-29  Score=194.89  Aligned_cols=201  Identities=22%  Similarity=0.340  Sum_probs=158.0

Q ss_pred             ceEEcCC----CCEEEEEeCCCcEEEEeCCCCCeE----EecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE
Q psy8891           2 CAKFLGD----PTKVVSGSCDRTLKIWDLRSTETK----FAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~----~~~l~t~s~D~~v~lwdl~~~~~~----~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~   72 (203)
                      +++|+|+    +..|+|||.|++||+||+...+..    +.++ .....+.+.+++..++|++.|++|++||+++++.+.
T Consensus        37 ~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~  116 (321)
T 3ow8_A           37 SVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK  116 (321)
T ss_dssp             EEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE
Confidence            6888874    678999999999999999765432    2222 224456788999999999999999999999999888


Q ss_pred             eeeeC-CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCC
Q psy8891          73 DIELH-GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        73 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~  128 (203)
                      .+..+ ..+..++++|++..++.+.....                       .+.|+|+|++|++++.|++|++||++++
T Consensus       117 ~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~  196 (321)
T 3ow8_A          117 SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG  196 (321)
T ss_dssp             EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            77654 46788999999888877654322                       3578999999999999999999999999


Q ss_pred             ceEEEEecc-ceEEEEEecCCcEEEEeecC--e-e---------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         129 EKVRDIELH-GKITSLDLSKGKYYFVFAEG--F-K---------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       129 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~--~-~---------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      +++..+..+ ..+.++.++++..+++....  . .               ....+..+.|+|++.+|++|+.|++|++||
T Consensus       197 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd  276 (321)
T 3ow8_A          197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD  276 (321)
T ss_dssp             EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence            988888765 45888899887665554321  0 0               011356788999999999999999999999


Q ss_pred             CCCceeeeeeccC
Q psy8891         190 CNTEQVEAVLKDM  202 (203)
Q Consensus       190 ~~~~~~~~~~~~~  202 (203)
                      +.++++++++.+|
T Consensus       277 ~~~~~~~~~~~~h  289 (321)
T 3ow8_A          277 VGTRTCVHTFFDH  289 (321)
T ss_dssp             TTTTEEEEEECCC
T ss_pred             CCCCEEEEEEcCC
Confidence            9999999998765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=3.7e-29  Score=199.24  Aligned_cols=201  Identities=19%  Similarity=0.333  Sum_probs=159.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      +++|+|++..|+|||.|++|++||+.+++..  +.+ ......+.|+|++++|+||+.|++|++||++.++++..+..| 
T Consensus       113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~  192 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD  192 (410)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC
Confidence            7899999999999999999999999876532  222 233455788999999999999999999999999888887765 


Q ss_pred             CeEEEEEecCCCceEEEecCCceE-----------------------EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                      ..|.+++++|++..++.++....+                       +.+++++.+|++++.|++|++||++++++...+
T Consensus       193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~  272 (410)
T 1vyh_C          193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL  272 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence            579999999998888776655433                       356788999999999999999999999888777


Q ss_pred             ecc-ceEEEEEecCC--------------------cEEEEeec-C-----------ee------EEeeeEEEEEEcCCCE
Q psy8891         135 ELH-GKITSLDLSKG--------------------KYYFVFAE-G-----------FK------VQCDFTRAVFVVDDDY  175 (203)
Q Consensus       135 ~~~-~~v~~~~~~~~--------------------~~~~~~~~-~-----------~~------~~~~~~~~~~~~~~~~  175 (203)
                      ..+ ..+.++.+++.                    ..+++... .           ..      +...+..+.|+|++++
T Consensus       273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~  352 (410)
T 1vyh_C          273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF  352 (410)
T ss_dssp             CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSC
T ss_pred             cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCE
Confidence            655 34777777663                    11222211 1           10      0113456789999999


Q ss_pred             EEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         176 VAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       176 l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      |++|+.|++|++||+.++++++++.+|
T Consensus       353 l~s~s~D~~i~vwd~~~~~~~~~~~~h  379 (410)
T 1vyh_C          353 ILSCADDKTLRVWDYKNKRCMKTLNAH  379 (410)
T ss_dssp             EEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred             EEEEeCCCeEEEEECCCCceEEEEcCC
Confidence            999999999999999999999999876

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=4.1e-28  Score=189.27  Aligned_cols=181  Identities=22%  Similarity=0.317  Sum_probs=126.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----E---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----F---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      +++|+||+ .|++|+.||+|++||+.+++..    .   .+......++|+|++++|+||+.|++|++||+++++.+..+
T Consensus        87 ~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~  165 (344)
T 4gqb_B           87 DLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY  165 (344)
T ss_dssp             EEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            68899984 7889999999999999876531    1   12233456789999999999999999999999999998888


Q ss_pred             eeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc---ceEEEEEecCC-c
Q psy8891          75 ELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH---GKITSLDLSKG-K  149 (203)
Q Consensus        75 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~-~  149 (203)
                      ..| +.|.++++++++.                  .++++++.|++|++||++++++...+...   ..+.++.+++. .
T Consensus       166 ~~h~~~V~~~~~~~~~~------------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  227 (344)
T 4gqb_B          166 RAHAAQVTCVAASPHKD------------------SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS  227 (344)
T ss_dssp             CCCSSCEEEEEECSSCT------------------TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT
T ss_pred             cCcCCceEEEEecCCCC------------------CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC
Confidence            765 5688887776543                  35666667777777777666665554322   22555555542 2


Q ss_pred             EEEEeec--Ce----------------eEEeeeEEEEEEcCC-CEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         150 YYFVFAE--GF----------------KVQCDFTRAVFVVDD-DYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       150 ~~~~~~~--~~----------------~~~~~~~~~~~~~~~-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      .+++...  +.                .+...+..++|+|++ .+|++|+.|++|++||++++++++ +++|
T Consensus       228 ~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H  298 (344)
T 4gqb_B          228 EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH  298 (344)
T ss_dssp             TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC
T ss_pred             cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC
Confidence            2222211  10                001134567788987 579999999999999999998765 4454

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=1.7e-27  Score=185.08  Aligned_cols=200  Identities=20%  Similarity=0.291  Sum_probs=154.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce----EEEee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE----KVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~----~~~~~   74 (203)
                      +++|+||+++|+|||.|++|++||+.+.+...  . +......+.++|++++|++|+.|+.|++||+...+    ....+
T Consensus        60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~  139 (340)
T 1got_B           60 AMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL  139 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe
Confidence            68999999999999999999999998766432  2 22234457889999999999999999999997653    33444


Q ss_pred             eeC-CeEEEEEecCCCceEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCce
Q psy8891          75 ELH-GKITSLDLSKGTETKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK  130 (203)
Q Consensus        75 ~~~-~~v~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~  130 (203)
                      ..| +.|.++.+.+++. +++++..                       ...+.|+|+++++++++.|++|++||++++++
T Consensus       140 ~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~  218 (340)
T 1got_B          140 AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC  218 (340)
T ss_dssp             ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred             cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee
Confidence            444 5677777776554 3333222                       12357889999999999999999999999998


Q ss_pred             EEEEecc-ceEEEEEecCCcEEEEeecC------------eeE--------EeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         131 VRDIELH-GKITSLDLSKGKYYFVFAEG------------FKV--------QCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       131 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~------------~~~--------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      ...+..+ ..|.++.++++...++....            ...        ...+..+.|+|++++|++|+.|++|++||
T Consensus       219 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd  298 (340)
T 1got_B          219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence            8888765 45899999887655554321            000        11356788999999999999999999999


Q ss_pred             CCCceeeeeeccC
Q psy8891         190 CNTEQVEAVLKDM  202 (203)
Q Consensus       190 ~~~~~~~~~~~~~  202 (203)
                      ..+++.+.++++|
T Consensus       299 ~~~~~~~~~~~~h  311 (340)
T 1got_B          299 ALKADRAGVLAGH  311 (340)
T ss_dssp             TTTCCEEEEEECC
T ss_pred             cccCcEeeEeecC
Confidence            9999999998876

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.96  E-value=1.1e-27  Score=184.74  Aligned_cols=180  Identities=22%  Similarity=0.391  Sum_probs=124.2

Q ss_pred             ceEEcCCC-CEEEEEeCCCcEEEEeCCCCCe-------EEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE
Q psy8891           2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTET-------KFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~-------~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~   72 (203)
                      +++|+|++ .+|+|||.|++|++||+.....       .+.+ ......+.+++++++|+||+.|++|++||+++++.+.
T Consensus        22 ~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~  101 (319)
T 3frx_A           22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ  101 (319)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE
Confidence            67899865 8999999999999999864221       1222 2334557889999999999999999999999999888


Q ss_pred             eeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcE
Q psy8891          73 DIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKY  150 (203)
Q Consensus        73 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~  150 (203)
                      .+..| +.|.++++++++                   ..|++++.|++|++||++. +++..+..+ ..+..+.+.+...
T Consensus       102 ~~~~h~~~v~~~~~~~~~-------------------~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A          102 RFVGHKSDVMSVDIDKKA-------------------SMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             EEECCSSCEEEEEECTTS-------------------CEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC--
T ss_pred             EEccCCCcEEEEEEcCCC-------------------CEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC
Confidence            77765 567777766644                   4666666666666666652 333333332 2344444433211


Q ss_pred             ------EEEeec-C----------e-------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         151 ------YFVFAE-G----------F-------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       151 ------~~~~~~-~----------~-------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                            .++... .          .       .+...+..+.++|++++|++|+.|++|++||+.+++++.+++.
T Consensus       162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~  236 (319)
T 3frx_A          162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA  236 (319)
T ss_dssp             ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence                  111110 0          0       0112355677889999999999999999999999999988864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=2.8e-27  Score=187.32  Aligned_cols=190  Identities=22%  Similarity=0.401  Sum_probs=136.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      +++|+|++++|++|+.|++|++||+.+.+...  .+ ......+.|.|+++.|++|+.|++|++||+++++....+..+.
T Consensus       128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~  207 (393)
T 1erj_A          128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED  207 (393)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC
Confidence            68999999999999999999999998866432  22 2234557889999999999999999999999999888888888


Q ss_pred             eEEEEEecC-CCceEEEecCCc------------------------------eEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          79 KITSLDLSK-GTETKFAGSSCN------------------------------DLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        79 ~v~~~~~~~-~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      .+..++++| ++..+++++...                              ..+.|+|+|+.|++++.|++|++||+++
T Consensus       208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            899999988 565555443221                              2256778888899999999999999876


Q ss_pred             CceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         128 EEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      ............        ....... .  .+...+..+.+++++.+|++|+.|++|++||..+++++.++++|
T Consensus       288 ~~~~~~~~~~~~--------~~~~~~~-~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h  351 (393)
T 1erj_A          288 ANNKSDSKTPNS--------GTCEVTY-I--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH  351 (393)
T ss_dssp             ---------------------CEEEEE-E--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCCcccccCCCC--------CcceEEE-e--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            443211110000        0000000 0  00112446678899999999999999999999999999999876

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=7.5e-27  Score=182.62  Aligned_cols=202  Identities=21%  Similarity=0.351  Sum_probs=155.5

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc------eEE
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE------EKV   71 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~------~~~   71 (203)
                      +|++|+|++.+|+|||.|++|++||..+.+...  . .......+.++|+++.|++|+.|+.+++|++...      ...
T Consensus        68 ~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~  147 (354)
T 2pbi_B           68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK  147 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence            378999999999999999999999998765432  1 2223456789999999999999999999998643      123


Q ss_pred             EeeeeC-CeEEEEEecCCCceEEEecCCceE-----------------------EEEcC--CCCEEEEeeCCCeEEEEEC
Q psy8891          72 RDIELH-GKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDG--AGTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        72 ~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~--~~~~l~s~s~d~~i~iWd~  125 (203)
                      ..+..| +.|.++.+++++..+++++....+                       +.|.|  +|..|++++.|++|++||+
T Consensus       148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~  227 (354)
T 2pbi_B          148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM  227 (354)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred             eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            334433 568999999988777766554433                       23444  4789999999999999999


Q ss_pred             CCCceEEEEecc-ceEEEEEecCCcEEEEeecC--e----------eE--------EeeeEEEEEEcCCCEEEEecCCCc
Q psy8891         126 RAEEKVRDIELH-GKITSLDLSKGKYYFVFAEG--F----------KV--------QCDFTRAVFVVDDDYVAVGSIDGN  184 (203)
Q Consensus       126 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~--~----------~~--------~~~~~~~~~~~~~~~l~s~s~d~~  184 (203)
                      ++++++..+..+ ..|.++.++++...++....  .          ..        ......+.|+|++.+|++|+.|++
T Consensus       228 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~  307 (354)
T 2pbi_B          228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT  307 (354)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc
Confidence            999998888765 46899999877655544321  0          00        113456789999999999999999


Q ss_pred             EEEEeCCCceeeeeeccC
Q psy8891         185 IYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       185 v~~wd~~~~~~~~~~~~~  202 (203)
                      |++||+.+++.+.++.+|
T Consensus       308 i~vwd~~~~~~~~~l~~h  325 (354)
T 2pbi_B          308 INVWDVLKGSRVSILFGH  325 (354)
T ss_dssp             EEEEETTTCSEEEEECCC
T ss_pred             EEEEECCCCceEEEEECC
Confidence            999999999999988776

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=5.9e-27  Score=179.53  Aligned_cols=182  Identities=18%  Similarity=0.382  Sum_probs=136.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      +++|+|++++|++|+.|++|++||+.+++...  . +......+.|+|++++|++|+.|+.|++||+++++.+..+..| 
T Consensus        28 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  107 (312)
T 4ery_A           28 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS  107 (312)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCC
Confidence            68999999999999999999999998766432  2 2223445788999999999999999999999999888777655 


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeec
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAE  156 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~  156 (203)
                      ..|.+++++|                   ++++|++++.|++|++||+++++++..+..+ ..+.++.++++...++...
T Consensus       108 ~~v~~~~~~~-------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
T 4ery_A          108 NYVFCCNFNP-------------------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  168 (312)
T ss_dssp             SCEEEEEECS-------------------SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEEcC-------------------CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence            4466665554                   5567777788888888888777777666554 3577777766544443221


Q ss_pred             --Ce----------eE-------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         157 --GF----------KV-------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       157 --~~----------~~-------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                        +.          ..       ...+..+.++|++++|++++.|+.|++||+.+++++..+++|
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  233 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH  233 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred             CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence              10          00       112345678899999999999999999999999999988765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.96  E-value=8e-27  Score=180.22  Aligned_cols=190  Identities=14%  Similarity=0.177  Sum_probs=151.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      +++|++++..++|||.|++|++||+.+++...  . +......+.++|++++|++|+.|+.|++||++.++....+..+ 
T Consensus        85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~  164 (321)
T 3ow8_A           85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG  164 (321)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence            67899999999999999999999998866432  1 2222344788999999999999999999999999887777655 


Q ss_pred             CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                      ..+.+++++|++..++.+...+.                       .+.|+|++++|++++.|++|++||+++++....+
T Consensus       165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~  244 (321)
T 3ow8_A          165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL  244 (321)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence            45999999999888776654332                       3578899999999999999999999999888887


Q ss_pred             ecc-ceEEEEEecCCcEEEEeecC-e-----------e------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         135 ELH-GKITSLDLSKGKYYFVFAEG-F-----------K------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       135 ~~~-~~v~~~~~~~~~~~~~~~~~-~-----------~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ..+ ..|.++.++++...++.... .           .      ....+..+.|+|++++|++++.|++|++||+.
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            765 45889999887655544321 0           0      11245678899999999999999999999963

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=1.2e-26  Score=180.54  Aligned_cols=193  Identities=19%  Similarity=0.245  Sum_probs=142.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee---e
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI---E   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~---~   75 (203)
                      +++|+|++.+|+|||.|++|++||+++++..  +. +......+.++|++++|++++.|++|++||+.........   .
T Consensus        81 ~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  160 (343)
T 2xzm_R           81 DLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN  160 (343)
T ss_dssp             EEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTS
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccC
Confidence            6789999999999999999999999987653  22 2233455789999999999999999999999854332222   2


Q ss_pred             eCCeEEEEEecCCC----------ceEEEecCC----------------------ceEEEEcCCCCEEEEeeCCCeEEEE
Q psy8891          76 LHGKITSLDLSKGT----------ETKFAGSSC----------------------NDLVTYDGAGTTIISGHFDKKVRFW  123 (203)
Q Consensus        76 ~~~~v~~~~~~~~~----------~~~~~~~~~----------------------~~~~~~~~~~~~l~s~s~d~~i~iW  123 (203)
                      ....|.+++++|+.          ..++.++..                      ...+.|+|+|++|++++.|++|++|
T Consensus       161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw  240 (343)
T 2xzm_R          161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW  240 (343)
T ss_dssp             CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence            23568888888865          334333322                      2346789999999999999999999


Q ss_pred             ECC-CCceEEEEeccceEEEEEecCCcEEEEeecCe--e----------------------------EEeeeEEEEEEcC
Q psy8891         124 DFR-AEEKVRDIELHGKITSLDLSKGKYYFVFAEGF--K----------------------------VQCDFTRAVFVVD  172 (203)
Q Consensus       124 d~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~----------------------------~~~~~~~~~~~~~  172 (203)
                      |++ ...+...+.....+.++.++++..++......  .                            ....+..++|+|+
T Consensus       241 d~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  320 (343)
T 2xzm_R          241 DILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL  320 (343)
T ss_dssp             ESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred             ECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence            994 44455555555678888888876555432210  0                            0112456789999


Q ss_pred             CCEEEEecCCCcEEEEeCCCce
Q psy8891         173 DDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       173 ~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      +++|++|+.|++|++|++++++
T Consensus       321 g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          321 GKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             SCCEEEEETTSEEEEEEEEEEE
T ss_pred             CCeEEEecCCceEEEEEEEccC
Confidence            9999999999999999987654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=3.9e-27  Score=187.56  Aligned_cols=190  Identities=20%  Similarity=0.322  Sum_probs=150.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      +++|+|+++.|+|||.|++|++||+.+.+....   +......+.+.|++++|+||+.|++|++||++++.++.++..| 
T Consensus       155 ~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~  234 (410)
T 1vyh_C          155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR  234 (410)
T ss_dssp             EEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC
Confidence            689999999999999999999999988665432   2223455788999999999999999999999999988888766 


Q ss_pred             CeEEEEEecCCCceEEEecCCceE-----------------------EEEcCC--------------------CCEEEEe
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGA--------------------GTTIISG  114 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~--------------------~~~l~s~  114 (203)
                      ..|..+.+++++..++.++..+.+                       +.|+|+                    |.+|+++
T Consensus       235 ~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            469999999998888777655433                       345564                    6789999


Q ss_pred             eCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEeec-Cee-----------------EEeeeEEEEEEcCCCE
Q psy8891         115 HFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFAE-GFK-----------------VQCDFTRAVFVVDDDY  175 (203)
Q Consensus       115 s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~~~~  175 (203)
                      +.|++|++||+++++++..+..+. .|.++.++++..+++... ...                 +...++.+.|+|++.+
T Consensus       315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  394 (410)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             eCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence            999999999999999988887664 588888887654444322 100                 1124567889999999


Q ss_pred             EEEecCCCcEEEEeCC
Q psy8891         176 VAVGSIDGNIYVWDCN  191 (203)
Q Consensus       176 l~s~s~d~~v~~wd~~  191 (203)
                      |++|+.|++|++|+++
T Consensus       395 l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          395 VVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEETTSEEEEEC--
T ss_pred             EEEEeCCCcEEEEeCC
Confidence            9999999999999963

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=4.4e-26  Score=175.76  Aligned_cols=193  Identities=21%  Similarity=0.336  Sum_probs=139.2

Q ss_pred             ceEEcCC-CCEEEEEeCCCcEEEEeCCCCCe-----E--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE
Q psy8891           2 CAKFLGD-PTKVVSGSCDRTLKIWDLRSTET-----K--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~-~~~l~t~s~D~~v~lwdl~~~~~-----~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~   72 (203)
                      |++|+|+ +++|+|||.|++||+||+...+.     .  +.+ ......+.++|++++|++++.|+.|++|+........
T Consensus        43 ~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~  122 (340)
T 4aow_A           43 QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR  122 (340)
T ss_dssp             EEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceee
Confidence            6899998 57999999999999999976432     1  112 2234557889999999999999999999987665433


Q ss_pred             eeee--------------------------------------------CCeEEEEEecCCCce--EEEecCC--------
Q psy8891          73 DIEL--------------------------------------------HGKITSLDLSKGTET--KFAGSSC--------   98 (203)
Q Consensus        73 ~~~~--------------------------------------------~~~v~~~~~~~~~~~--~~~~~~~--------   98 (203)
                      ....                                            ...+..++++++...  ++.+...        
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~  202 (340)
T 4aow_A          123 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL  202 (340)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred             eecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEEC
Confidence            2211                                            123445555543321  2222211        


Q ss_pred             ---------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCee----
Q psy8891          99 ---------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK----  159 (203)
Q Consensus        99 ---------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----  159 (203)
                                     ...+.|+|++++|++++.|++|++||+++.+++..+..+..+..+.++++..++.......    
T Consensus       203 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iw  282 (340)
T 4aow_A          203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIW  282 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEE
T ss_pred             CCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEE
Confidence                           1235789999999999999999999999999998888888898888887765554332110    


Q ss_pred             ----------------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         160 ----------------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       160 ----------------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                                            ....++.++|+|++++|++|+.|++|++||+.+|.
T Consensus       283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence                                  11235678899999999999999999999999885

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=2.1e-26  Score=191.85  Aligned_cols=201  Identities=20%  Similarity=0.280  Sum_probs=148.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe----------cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA----------GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~----------~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      +++|+||+++|+|||.|++|++||+.+++....          +......+.|+|++++|+|++.|++|++||+++++.+
T Consensus       195 ~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            689999999999999999999999987664321          1222445789999999999999999999999987665


Q ss_pred             Eeee-------------------------------------------e-CCeEEEEEecCCCceEEEecCC---------
Q psy8891          72 RDIE-------------------------------------------L-HGKITSLDLSKGTETKFAGSSC---------   98 (203)
Q Consensus        72 ~~~~-------------------------------------------~-~~~v~~~~~~~~~~~~~~~~~~---------   98 (203)
                      .++.                                           . ...|.+++++|++..++.++..         
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence            4332                                           1 2458888888877665543211         


Q ss_pred             --------------------------------------------------------------------------------
Q psy8891          99 --------------------------------------------------------------------------------   98 (203)
Q Consensus        99 --------------------------------------------------------------------------------   98 (203)
                                                                                                      
T Consensus       355 ~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v  434 (611)
T 1nr0_A          355 TGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI  434 (611)
T ss_dssp             TCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEE
T ss_pred             CCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceE
Confidence                                                                                            


Q ss_pred             ----------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCce--EEEEeccceEEEEEecCCcEEEEeecC---
Q psy8891          99 ----------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--VRDIELHGKITSLDLSKGKYYFVFAEG---  157 (203)
Q Consensus        99 ----------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~---  157 (203)
                                      ...+.|+|+|++|++++.|++|++||+..++.  .+.......|.++.++++..+++....   
T Consensus       435 ~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~  514 (611)
T 1nr0_A          435 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK  514 (611)
T ss_dssp             EEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCC
Confidence                            01356789999999999999999999987643  233233456999999988665554311   


Q ss_pred             ---------e--------e-EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce-ee-eeeccC
Q psy8891         158 ---------F--------K-VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ-VE-AVLKDM  202 (203)
Q Consensus       158 ---------~--------~-~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~-~~-~~~~~~  202 (203)
                               .        . +...+..+.|+|++++|++|+.|++|++||+++++ .. ..+.+|
T Consensus       515 v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h  579 (611)
T 1nr0_A          515 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH  579 (611)
T ss_dssp             EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred             EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence                     0        0 22346678899999999999999999999998765 33 455554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=2.1e-26  Score=176.48  Aligned_cols=183  Identities=22%  Similarity=0.402  Sum_probs=123.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      +++|+|+++.|++|+.|++|++||+++.+...  . +......+.+.|+++.|++|+.|++|++||+++++.+..+..| 
T Consensus        70 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  149 (312)
T 4ery_A           70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS  149 (312)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence            67899999999999999999999999876532  2 2223445678999999999999999999999999888777654 


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc--ceEEEEEecCCcEEEEee
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH--GKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~  155 (203)
                      .+|.++++++++                   ..|++++.|++|++||+++++.+..+...  ..+..+.++++...++..
T Consensus       150 ~~v~~~~~~~~~-------------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  210 (312)
T 4ery_A          150 DPVSAVHFNRDG-------------------SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA  210 (312)
T ss_dssp             SCEEEEEECTTS-------------------SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred             CcEEEEEEcCCC-------------------CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE
Confidence            457777666654                   45555555555555555555444443221  234444444433222221


Q ss_pred             cC-eeE----------Ee---------eeEEEEEE-cCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         156 EG-FKV----------QC---------DFTRAVFV-VDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       156 ~~-~~~----------~~---------~~~~~~~~-~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                      .. ..+          ..         ......+. +++.+|++|+.|+.|++||+.++++++++++|.
T Consensus       211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~  279 (312)
T 4ery_A          211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT  279 (312)
T ss_dssp             ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred             cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC
Confidence            10 000          00         00112233 567899999999999999999999999998763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=7.9e-27  Score=183.27  Aligned_cols=166  Identities=12%  Similarity=0.066  Sum_probs=125.0

Q ss_pred             ceEEcCCCCEEE--EEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee--e
Q psy8891           2 CAKFLGDPTKVV--SGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI--E   75 (203)
Q Consensus         2 ~~~~~~~~~~l~--t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~--~   75 (203)
                      +++|||||++|+  |++.|++||+||+++.+...  .+......++|+|++++|++++.| .+++|+..+++.+...  .
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~  216 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF  216 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC
Confidence            589999999876  45579999999999876542  233334557899999999999855 5666666666554322  2


Q ss_pred             e-CCeEEEEEecCCCceEEEecCC-------------------------------ceEEEEcCCCCEEEEeeCCCeEEEE
Q psy8891          76 L-HGKITSLDLSKGTETKFAGSSC-------------------------------NDLVTYDGAGTTIISGHFDKKVRFW  123 (203)
Q Consensus        76 ~-~~~v~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~l~s~s~d~~i~iW  123 (203)
                      . ...|.+++|+|++..++.++..                               ...+.|+|+|++|++|+.|++|++|
T Consensus       217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iw  296 (365)
T 4h5i_A          217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALV  296 (365)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEE
Confidence            2 3468899999988776654321                               1235799999999999999999999


Q ss_pred             ECCCCceEEEE-eccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         124 DFRAEEKVRDI-ELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       124 d~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      |++++++++.+ ..|..                       .++.++|+||+++|+|||.|++|||||+.
T Consensus       297 d~~~~~~~~~~~~gH~~-----------------------~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          297 KLKDLSMSKIFKQAHSF-----------------------AITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             ETTTTEEEEEETTSSSS-----------------------CEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             ECCCCcEEEEecCcccC-----------------------CEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            99999888765 33321                       23456678999999999999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=4.8e-27  Score=183.01  Aligned_cols=171  Identities=18%  Similarity=0.264  Sum_probs=121.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----E-e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce--EEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----F-A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE--KVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~-~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~--~~~~   73 (203)
                      +++|+|++++|+|||.|++|++||+......    . . +......+.|+|++++|++|+.|++|++||+..+.  .+..
T Consensus        21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~  100 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT  100 (345)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE
Confidence            5899999999999999999999999875421    1 1 22234567899999999999999999999998764  4555


Q ss_pred             eeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecc-ceEEEEEecCC
Q psy8891          74 IELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VRDIELH-GKITSLDLSKG  148 (203)
Q Consensus        74 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~---~~~~~~~-~~v~~~~~~~~  148 (203)
                      +..| +.|.+++++|                   ++++|++++.|++|++||++++..   +..+..+ ..+..+.++++
T Consensus       101 ~~~h~~~v~~v~~sp-------------------~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A          101 LEGHENEVKSVAWAP-------------------SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             ECCCSSCEEEEEECT-------------------TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             ccCCCCCceEEEEeC-------------------CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence            5544 4576665554                   556788888888888888876533   2333333 34777777665


Q ss_pred             cEEEEeecC--e-----------e-------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         149 KYYFVFAEG--F-----------K-------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       149 ~~~~~~~~~--~-----------~-------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ..+++....  .           .       +...+..+.|+|++++|++|+.|++|++||..
T Consensus       162 ~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            443332210  0           0       01234567899999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=2.4e-26  Score=178.67  Aligned_cols=187  Identities=21%  Similarity=0.349  Sum_probs=144.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe------EEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET------KFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~------~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      +++|+|++..|++|+.|++|++||+.+.+.      ...+ ......+.+.+++ .+++++.|++|++||+++++.+..+
T Consensus       102 ~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~  180 (340)
T 1got_B          102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTF  180 (340)
T ss_dssp             EEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEE
Confidence            688999999999999999999999986431      1122 2223445566654 6999999999999999999988888


Q ss_pred             eeC-CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCce
Q psy8891          75 ELH-GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEK  130 (203)
Q Consensus        75 ~~~-~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~  130 (203)
                      ..| +.|.+++++|++..++.++....                       .+.|+|++++|++++.|++|++||+++++.
T Consensus       181 ~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~  260 (340)
T 1got_B          181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence            755 67999999999887776654332                       357889999999999999999999999887


Q ss_pred             EEEEeccc---eEEEEEecCCcEEEEeecC-e-----------e------EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         131 VRDIELHG---KITSLDLSKGKYYFVFAEG-F-----------K------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       131 ~~~~~~~~---~v~~~~~~~~~~~~~~~~~-~-----------~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      +..+..+.   .+.++.++++..+++.... .           .      +...+..+.|+|++.+|+||+.|++|++||
T Consensus       261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            77665432   5888888887655544321 0           0      112456778999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=4.5e-26  Score=189.89  Aligned_cols=199  Identities=17%  Similarity=0.182  Sum_probs=154.7

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--EEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCce--EEEeee
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET--KFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE--KVRDIE   75 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~--~~~~~~   75 (203)
                      .+++|+|||++|++++ +++|++||+.+++.  .+.+ ......++++|++++|+||+.|++|+|||+..++  ...++.
T Consensus        22 ~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~  100 (611)
T 1nr0_A           22 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP  100 (611)
T ss_dssp             CCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE
T ss_pred             eEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec
Confidence            3689999999999998 57999999986442  2322 3335667899999999999999999999997543  334454


Q ss_pred             e-CCeEEEEEecCCCceEEEecCC-------------------------ceEEEEcCCCC-EEEEeeCCCeEEEEECCCC
Q psy8891          76 L-HGKITSLDLSKGTETKFAGSSC-------------------------NDLVTYDGAGT-TIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        76 ~-~~~v~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~-~l~s~s~d~~i~iWd~~~~  128 (203)
                      . .++|.+++|+|++..++++...                         ...+.|+|++. .|++++.|++|++||.+++
T Consensus       101 ~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~  180 (611)
T 1nr0_A          101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF  180 (611)
T ss_dssp             CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred             ccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence            4 3689999999999887654321                         13467899986 6999999999999999988


Q ss_pred             ceEEEEecc-ceEEEEEecCCcEEEEeecC------------e-------------eEEeeeEEEEEEcCCCEEEEecCC
Q psy8891         129 EKVRDIELH-GKITSLDLSKGKYYFVFAEG------------F-------------KVQCDFTRAVFVVDDDYVAVGSID  182 (203)
Q Consensus       129 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~------------~-------------~~~~~~~~~~~~~~~~~l~s~s~d  182 (203)
                      ++...+..| ..|.++.++++..+++....            .             .+...+..+.|+|++++|++|+.|
T Consensus       181 ~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D  260 (611)
T 1nr0_A          181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD  260 (611)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC
Confidence            888777766 45999999887665554321            0             112245678899999999999999


Q ss_pred             CcEEEEeCCCceeeeeec
Q psy8891         183 GNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       183 ~~v~~wd~~~~~~~~~~~  200 (203)
                      ++|++||+.+++++++++
T Consensus       261 ~~v~lWd~~~~~~~~~~~  278 (611)
T 1nr0_A          261 KTIKIWNVATLKVEKTIP  278 (611)
T ss_dssp             SEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeCCCCceeeeec
Confidence            999999999999988775

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=3.9e-26  Score=178.54  Aligned_cols=169  Identities=24%  Similarity=0.352  Sum_probs=114.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecC-cCceEEEEeC--CCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGS-SCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~-~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++|+|++..|+|||.|++|++||+++++..  +.++ .....+.+.|  +++.|+||+.|++|++||+++++++..+..
T Consensus       159 ~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~  238 (354)
T 2pbi_B          159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET  238 (354)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            5789999999999999999999999987653  2222 2233455655  467999999999999999999998877765


Q ss_pred             C-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc---ceEEEEEecCCcEEE
Q psy8891          77 H-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH---GKITSLDLSKGKYYF  152 (203)
Q Consensus        77 ~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~  152 (203)
                      | ..|.+++++|++.                   .|++++.|++|++||+++++.+..+..+   ..+.++.++++..++
T Consensus       239 h~~~v~~v~~~p~~~-------------------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          239 HESDVNSVRYYPSGD-------------------AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL  299 (354)
T ss_dssp             CSSCEEEEEECTTSS-------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CCCCeEEEEEeCCCC-------------------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence            5 4577777766544                   5555555555555555554443333221   124444444433322


Q ss_pred             EeecC------------e------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         153 VFAEG------------F------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       153 ~~~~~------------~------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      +....            .      .+...+..+.|+|++++|++|+.|++|++|+
T Consensus       300 ~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            22110            0      0112345677889999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=2.3e-26  Score=179.40  Aligned_cols=170  Identities=19%  Similarity=0.165  Sum_probs=121.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--c-CcCceEEEEeCCC-CEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--G-SSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~-~~~~~~~~~~~~~-~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +++|+|++++|+||+.|++|++||+++++....  + ......+.+.+++ .+|+||+.|++|++||+++++....+..+
T Consensus       132 ~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  211 (344)
T 4gqb_B          132 TVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS  211 (344)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence            689999999999999999999999998765432  2 2234456777876 48899999999999999999877666432


Q ss_pred             ---CeEEEEEecCCCc-eEEEecCCce-----------------------EEEEcCCC-CEEEEeeCCCeEEEEECCCCc
Q psy8891          78 ---GKITSLDLSKGTE-TKFAGSSCND-----------------------LVTYDGAG-TTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        78 ---~~v~~~~~~~~~~-~~~~~~~~~~-----------------------~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~  129 (203)
                         ..+.+++++++.. .++.+...+.                       .+.|+|++ ++|++++.|++|++||+++++
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~  291 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE  291 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence               3578888888544 3444433322                       24677876 568888888888888888766


Q ss_pred             eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEecCCCcEEEEeCCCcee
Q psy8891         130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~v~~wd~~~~~~  195 (203)
                      ..+ +..|.                       ..+..+.|+|+++ +|+||+.|++|++|++.+..+
T Consensus       292 ~~~-~~~H~-----------------------~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          292 LFR-SQAHR-----------------------DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEE-ECCCS-----------------------SCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEE-EcCCC-----------------------CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            432 22221                       1234566778875 678999999999999987544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=3.2e-26  Score=178.34  Aligned_cols=199  Identities=18%  Similarity=0.215  Sum_probs=137.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--E--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCce---EEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET--K--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE---KVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~---~~~~   73 (203)
                      +++|+|++++|++||.|++|++||+.....  .  +.+ ......+.|+|++++|++|+.|++|++||++.+.   .+..
T Consensus        66 ~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  145 (345)
T 3fm0_A           66 KVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV  145 (345)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE
Confidence            689999999999999999999999976542  1  222 2234557899999999999999999999998764   3444


Q ss_pred             eeeC-CeEEEEEecCCCceEEEecCCce-------------------------EEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          74 IELH-GKITSLDLSKGTETKFAGSSCND-------------------------LVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        74 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      +..| ..|.+++++|++..++.++....                         .+.|+|+|++|++++.|++|++||...
T Consensus       146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            4444 56999999998877766543321                         256899999999999999999999632


Q ss_pred             Cc---------------eEEEEec--cceEEEEEecCCcEEEEeecC-------------------e--------eEEee
Q psy8891         128 EE---------------KVRDIEL--HGKITSLDLSKGKYYFVFAEG-------------------F--------KVQCD  163 (203)
Q Consensus       128 ~~---------------~~~~~~~--~~~v~~~~~~~~~~~~~~~~~-------------------~--------~~~~~  163 (203)
                      ..               ++..+..  ...|..+.+++....++...+                   +        .+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~  305 (345)
T 3fm0_A          226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD  305 (345)
T ss_dssp             TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred             CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence            21               1222221  134677776654333322110                   0        01124


Q ss_pred             eEEEEEEcCC-CEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         164 FTRAVFVVDD-DYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       164 ~~~~~~~~~~-~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +..+.|+|++ .+|+||+.|++|++|++.+++....++
T Consensus       306 V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~  343 (345)
T 3fm0_A          306 VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH  343 (345)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred             EeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence            6678899987 599999999999999999888776654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=4.3e-26  Score=178.53  Aligned_cols=196  Identities=15%  Similarity=0.239  Sum_probs=138.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----E---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----F---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      +++|+|++. +++++.|++|++||+.+++..    .   .+......+.++|++++|++|+.|++|++||+++++.+..+
T Consensus        99 ~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~  177 (357)
T 4g56_B           99 DVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY  177 (357)
T ss_dssp             EEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            689999975 567889999999999875421    1   12223455788999999999999999999999999988888


Q ss_pred             eeC-CeEEEEEecCCCce-EEEecCCc-------------------------eEEEEcCC-CCEEEEeeCCCeEEEEECC
Q psy8891          75 ELH-GKITSLDLSKGTET-KFAGSSCN-------------------------DLVTYDGA-GTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        75 ~~~-~~v~~~~~~~~~~~-~~~~~~~~-------------------------~~~~~~~~-~~~l~s~s~d~~i~iWd~~  126 (203)
                      ..| ..|.++++++++.. ++.+....                         ..+.|+|+ +.+|++++.|+.|++||++
T Consensus       178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~  257 (357)
T 4g56_B          178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK  257 (357)
T ss_dssp             CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred             cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence            765 67999999987653 44433222                         13568886 5689999999999999999


Q ss_pred             CCceEEEEecc-ceEEEEEecCCc-EEEEeec--Ce---------------eEEeeeEEEEEEc-CCCEEEEecCCCcEE
Q psy8891         127 AEEKVRDIELH-GKITSLDLSKGK-YYFVFAE--GF---------------KVQCDFTRAVFVV-DDDYVAVGSIDGNIY  186 (203)
Q Consensus       127 ~~~~~~~~~~~-~~v~~~~~~~~~-~~~~~~~--~~---------------~~~~~~~~~~~~~-~~~~l~s~s~d~~v~  186 (203)
                      ++++++.+..+ ..|.++.++++. .+++...  +.               .+...+..++|+| ++.+|+||+.|++|+
T Consensus       258 ~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~  337 (357)
T 4g56_B          258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL  337 (357)
T ss_dssp             CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence            99988888765 458899888653 3333221  11               0112456788998 789999999999999


Q ss_pred             EEeCCC-ceeeee
Q psy8891         187 VWDCNT-EQVEAV  198 (203)
Q Consensus       187 ~wd~~~-~~~~~~  198 (203)
                      +||+.+ ++....
T Consensus       338 iW~~~~~~~~~~~  350 (357)
T 4g56_B          338 HHHLPSEGRTENL  350 (357)
T ss_dssp             EEECC--------
T ss_pred             EEECCCCCccccc
Confidence            999865 343333

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=1.3e-25  Score=174.65  Aligned_cols=178  Identities=21%  Similarity=0.390  Sum_probs=117.5

Q ss_pred             ceEE-----cC-CCCEEEEEeCCCcEEEEeCCCCC-------e--EEec-CcCceEEEEeCCCCEEEEecCCCeEEEEEC
Q psy8891           2 CAKF-----LG-DPTKVVSGSCDRTLKIWDLRSTE-------T--KFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDF   65 (203)
Q Consensus         2 ~~~~-----~~-~~~~l~t~s~D~~v~lwdl~~~~-------~--~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~   65 (203)
                      +++|     ++ ++.+|+|||.|++|++||+...+       .  .+.+ ......+.++|++.+|+||+.|++|++||+
T Consensus        26 ~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~  105 (343)
T 2xzm_R           26 SIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL  105 (343)
T ss_dssp             EEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred             heeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence            5667     66 89999999999999999997532       1  1122 223455778999999999999999999999


Q ss_pred             CCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe----ccceE
Q psy8891          66 RAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE----LHGKI  140 (203)
Q Consensus        66 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~----~~~~v  140 (203)
                      ++++.+..+..| +.|.+++++|                   ++++|++++.|++|++||+.. +......    ....+
T Consensus       106 ~~~~~~~~~~~h~~~v~~v~~sp-------------------~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R          106 RTGTTYKRFVGHQSEVYSVAFSP-------------------DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWV  165 (343)
T ss_dssp             TSSCEEEEEECCCSCEEEEEECS-------------------STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCE
T ss_pred             CCCcEEEEEcCCCCcEEEEEECC-------------------CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCcee
Confidence            999888777655 5677776665                   445666666677777776652 2222111    11234


Q ss_pred             EEEEecCCc----------EEEEeec--C--------e-------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC-CC
Q psy8891         141 TSLDLSKGK----------YYFVFAE--G--------F-------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC-NT  192 (203)
Q Consensus       141 ~~~~~~~~~----------~~~~~~~--~--------~-------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~-~~  192 (203)
                      .++.+++..          .+++...  +        .       .+...+..+.|+|++++|++|+.|++|++||+ ..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~  245 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL  245 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            555544432          1111110  0        0       01123556778999999999999999999999 44


Q ss_pred             ceeeeee
Q psy8891         193 EQVEAVL  199 (203)
Q Consensus       193 ~~~~~~~  199 (203)
                      +.+...+
T Consensus       246 ~~~~~~~  252 (343)
T 2xzm_R          246 TYPQREF  252 (343)
T ss_dssp             SSCSEEE
T ss_pred             cccceee
Confidence            4444444

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=9.1e-26  Score=172.29  Aligned_cols=190  Identities=17%  Similarity=0.265  Sum_probs=136.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCC--Ce--EEec-CcCceEEEEeC--CCCEEEEecCCCeEEEEECCCce--EEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRST--ET--KFAG-SSCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEE--KVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~--~~--~~~~-~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~--~~~   72 (203)
                      +++|+|+|++|+|||.|++|++||+...  +.  .+.+ ......+.|.+  ++++|+||+.|++|+|||++.++  .+.
T Consensus        14 ~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~   93 (297)
T 2pm7_B           14 DAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA   93 (297)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE
Confidence            6899999999999999999999999742  21  2222 22344466755  37899999999999999998764  344


Q ss_pred             eeee-CCeEEEEEecCC--CceEEEecCCce-------------------------EEEEcCC-------------CCEE
Q psy8891          73 DIEL-HGKITSLDLSKG--TETKFAGSSCND-------------------------LVTYDGA-------------GTTI  111 (203)
Q Consensus        73 ~~~~-~~~v~~~~~~~~--~~~~~~~~~~~~-------------------------~~~~~~~-------------~~~l  111 (203)
                      .+.. ...|.+++++|+  +..++.++....                         .+.|+|+             ++.|
T Consensus        94 ~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l  173 (297)
T 2pm7_B           94 VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  173 (297)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred             EeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence            4443 367999999986  555554443222                         2456665             5699


Q ss_pred             EEeeCCCeEEEEECCCCc----eEEEEecc-ceEEEEEecCCc---EEEEeecC--e---------------e------E
Q psy8891         112 ISGHFDKKVRFWDFRAEE----KVRDIELH-GKITSLDLSKGK---YYFVFAEG--F---------------K------V  160 (203)
Q Consensus       112 ~s~s~d~~i~iWd~~~~~----~~~~~~~~-~~v~~~~~~~~~---~~~~~~~~--~---------------~------~  160 (203)
                      ++++.|++|++||+++++    ....+..| ..|.++.++++.   .+++....  .               .      .
T Consensus       174 ~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~  253 (297)
T 2pm7_B          174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF  253 (297)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred             EEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC
Confidence            999999999999998765    34455544 458899988862   44433211  0               0      0


Q ss_pred             EeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       161 ~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ...+..+.|+|++++|++++.|++|++|+.+
T Consensus       254 ~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          254 PDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            1234567899999999999999999999976

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.5e-25  Score=170.48  Aligned_cols=201  Identities=18%  Similarity=0.237  Sum_probs=161.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      +++|+|++++|++|+.|++|++||+.+.+....   +......+.+.|++++|++++.|++|++||+++++.+..+....
T Consensus        37 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  116 (369)
T 3zwl_B           37 QVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV  116 (369)
T ss_dssp             EEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS
T ss_pred             EEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence            689999999999999999999999988665322   22234456789999999999999999999999999988888888


Q ss_pred             eEEEEEecCCCceEEEecCC-----------------------------------------ceEEEEcCCCCEEEEeeCC
Q psy8891          79 KITSLDLSKGTETKFAGSSC-----------------------------------------NDLVTYDGAGTTIISGHFD  117 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~l~s~s~d  117 (203)
                      .+.++.+++++..++.+...                                         ...+.|+|+++.|++++.|
T Consensus       117 ~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  196 (369)
T 3zwl_B          117 PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD  196 (369)
T ss_dssp             CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT
T ss_pred             CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC
Confidence            89999999998877765432                                         2335688899999999999


Q ss_pred             CeEEEEECCC-CceEEEEecc-ceEEEEEecCCcEEEEeec--Cee---------------EEeeeEEEEEEcCCCEEEE
Q psy8891         118 KKVRFWDFRA-EEKVRDIELH-GKITSLDLSKGKYYFVFAE--GFK---------------VQCDFTRAVFVVDDDYVAV  178 (203)
Q Consensus       118 ~~i~iWd~~~-~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~l~s  178 (203)
                      +.|++||+++ ++....+..+ ..+.++.++++...++...  +..               ....+..+.++|+++++++
T Consensus       197 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  276 (369)
T 3zwl_B          197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIIL  276 (369)
T ss_dssp             SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred             CEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEE
Confidence            9999999998 6777777654 5688899887765554432  110               1123456778999999999


Q ss_pred             ecCCC--------------cEEEEeCCCceeeeeeccC
Q psy8891         179 GSIDG--------------NIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       179 ~s~d~--------------~v~~wd~~~~~~~~~~~~~  202 (203)
                      ++.++              .+++||..+++++..+++|
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  314 (369)
T 3zwl_B          277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH  314 (369)
T ss_dssp             EECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred             eecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence            99988              8999999999999988765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.95  E-value=1.7e-25  Score=177.15  Aligned_cols=173  Identities=24%  Similarity=0.433  Sum_probs=131.6

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--cCc-------------------CceEEEEeCCCCEEEEecCCCe
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--GSS-------------------CNDLVTYDGAGTTIISGHFDKK   59 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~~~-------------------~~~~~~~~~~~~~l~s~~~D~~   59 (203)
                      .|++|+|||++|++|+ |+++++|++.+++....  ...                   ....++|+|++++|++|+.|++
T Consensus        68 ~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~  146 (393)
T 1erj_A           68 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL  146 (393)
T ss_dssp             CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence            4789999999999986 78999999987654321  110                   1335788999999999999999


Q ss_pred             EEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc
Q psy8891          60 VRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG  138 (203)
Q Consensus        60 i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~  138 (203)
                      |+|||+.+++.+..+..| ..|.+++++                   |++..|++++.|++|++||++++++...+..+.
T Consensus       147 i~iwd~~~~~~~~~~~~h~~~v~~~~~~-------------------p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~  207 (393)
T 1erj_A          147 IRIWDIENRKIVMILQGHEQDIYSLDYF-------------------PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED  207 (393)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEC-------------------TTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEECCCCcEEEEEccCCCCEEEEEEc-------------------CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC
Confidence            999999999888777655 446666554                   566789999999999999999999888888777


Q ss_pred             eEEEEEecC-CcEEEEeec--C----------ee-------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         139 KITSLDLSK-GKYYFVFAE--G----------FK-------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       139 ~v~~~~~~~-~~~~~~~~~--~----------~~-------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      .+..+.+++ +..+++...  +          ..             +...+..+.|+|++++|++|+.|++|++||+.+
T Consensus       208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            888888876 433333221  1          00             112356678999999999999999999999875


Q ss_pred             c
Q psy8891         193 E  193 (203)
Q Consensus       193 ~  193 (203)
                      .
T Consensus       288 ~  288 (393)
T 1erj_A          288 A  288 (393)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=1.3e-25  Score=189.47  Aligned_cols=191  Identities=24%  Similarity=0.324  Sum_probs=144.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee---
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE---   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~---   75 (203)
                      +++|+|++++|+|||.|++|++||+.+++..  +. +......+.++|+++.|+||+.|++|++||+..........   
T Consensus       435 ~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  514 (694)
T 3dm0_A          435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE  514 (694)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence            6889999999999999999999999886543  22 22334557889999999999999999999987654332211   


Q ss_pred             -eCCeEEEEEecCCC--ceEEEecCCc-----------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891          76 -LHGKITSLDLSKGT--ETKFAGSSCN-----------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        76 -~~~~v~~~~~~~~~--~~~~~~~~~~-----------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                       +...|.+++++++.  ..++.++...                       ..+.|+|++++|++++.|++|++||+++++
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence             23468999999875  3344443222                       236789999999999999999999999999


Q ss_pred             eEEEEeccceEEEEEecCCcEEEEeecCeeE----------E--------------------------eeeEEEEEEcCC
Q psy8891         130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKV----------Q--------------------------CDFTRAVFVVDD  173 (203)
Q Consensus       130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------~--------------------------~~~~~~~~~~~~  173 (203)
                      ++..+..+..+.++.++++..++.......+          .                          ..++.+.++|++
T Consensus       595 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          595 KLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             EEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred             eEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence            8888777778999998887655543321100          0                          013567789999


Q ss_pred             CEEEEecCCCcEEEEeCCC
Q psy8891         174 DYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       174 ~~l~s~s~d~~v~~wd~~~  192 (203)
                      ++|++|+.||+|++||+..
T Consensus       675 ~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          675 STLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             SEEEEEETTSEEEEEEC--
T ss_pred             CEEEEEcCCCeEEEEeccC
Confidence            9999999999999999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=2.3e-26  Score=181.30  Aligned_cols=182  Identities=18%  Similarity=0.308  Sum_probs=121.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE-------E
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK-------V   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~-------~   71 (203)
                      +++|+|++.+|+|||.|++|++||+.+.+...  . +......++++|++++|++|+.|+.+++||+.....       .
T Consensus        71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~  150 (380)
T 3iz6_a           71 SLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVS  150 (380)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccce
Confidence            78999999999999999999999998765432  2 222234467899999999999999999999865321       1


Q ss_pred             EeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-----c-ceEEEEE
Q psy8891          72 RDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-----H-GKITSLD  144 (203)
Q Consensus        72 ~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~-----~-~~v~~~~  144 (203)
                      ..+..| +.+.++.+.|+.                  +..|++++.|++|++||+++++.+..+..     + ..+.++.
T Consensus       151 ~~~~gh~~~v~~~~~~~~~------------------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          151 RVLTGHKGYASSCQYVPDQ------------------ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             CBCCCCSSCCCCCBCCSSS------------------SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred             eeccCCCcceEEEEEecCC------------------CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence            222222 234444443321                  23567777777777777776666555421     1 2355555


Q ss_pred             ecC-CcEEEEeec--C-----------e------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         145 LSK-GKYYFVFAE--G-----------F------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       145 ~~~-~~~~~~~~~--~-----------~------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      +.+ +..+++...  +           .      .+...+..+.|+|++.+|++|+.|++|++||+++++.+.++..
T Consensus       213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~  289 (380)
T 3iz6_a          213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR  289 (380)
T ss_dssp             ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred             eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence            543 222222211  0           0      0112355678899999999999999999999999999887754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=3.2e-26  Score=181.65  Aligned_cols=202  Identities=12%  Similarity=0.156  Sum_probs=151.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-CC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-HG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-~~   78 (203)
                      +++|+|++++|++|+.|++|++||+.+.+..  ...........++++++.|++|+.|+.|++||++.++....+.. .+
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~  140 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVS  140 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSS
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccC
Confidence            5789999999999999999999999764321  11222233456788999999999999999999999888777644 46


Q ss_pred             eEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          79 KITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                      .|.+++++|++..++.++....                       .+.|+|+++.|++++.|++|++||+++++++..+.
T Consensus       141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  220 (420)
T 3vl1_A          141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN  220 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence            7999999999888777665433                       25688999999999999999999999998888776


Q ss_pred             cc----ceEEEEE---------------------ecCCcEEEEeecC------------ee-------EEeeeEEEEEEc
Q psy8891         136 LH----GKITSLD---------------------LSKGKYYFVFAEG------------FK-------VQCDFTRAVFVV  171 (203)
Q Consensus       136 ~~----~~v~~~~---------------------~~~~~~~~~~~~~------------~~-------~~~~~~~~~~~~  171 (203)
                      .+    ..+..+.                     ++++...++....            ..       ....+..+.++|
T Consensus       221 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  300 (420)
T 3vl1_A          221 RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDG  300 (420)
T ss_dssp             BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECS
T ss_pred             cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeC
Confidence            42    2233333                     2344333332211            00       112456788999


Q ss_pred             CCC-EEEEecCCCcEEEEeCCCce-eeeeeccCC
Q psy8891         172 DDD-YVAVGSIDGNIYVWDCNTEQ-VEAVLKDMH  203 (203)
Q Consensus       172 ~~~-~l~s~s~d~~v~~wd~~~~~-~~~~~~~~~  203 (203)
                      ++. +|++|+.|+.|++||+++++ ++..+++||
T Consensus       301 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  334 (420)
T 3vl1_A          301 NNANYIYAGYENGMLAQWDLRSPECPVGEFLINE  334 (420)
T ss_dssp             SCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST
T ss_pred             CCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC
Confidence            998 99999999999999999874 477777654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.95  E-value=5.7e-26  Score=179.08  Aligned_cols=194  Identities=19%  Similarity=0.286  Sum_probs=140.3

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe---------EEecC-cCceEEEEeCC-CCEEEEecCCCeEEEEECCCce
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET---------KFAGS-SCNDLVTYDGA-GTTIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~---------~~~~~-~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~~~~   69 (203)
                      ++++|+|+++.|++|+.|++|++||+.....         .+.++ .....+.+.|+ +..|+||+.|++|++||+++++
T Consensus       112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~  191 (380)
T 3iz6_a          112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ  191 (380)
T ss_dssp             CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence            3689999999999999999999999975221         11111 11222345554 5579999999999999999998


Q ss_pred             EEEeee------eCCeEEEEEecC-CCceEEEecCCc------------------------eEEEEcCCCCEEEEeeCCC
Q psy8891          70 KVRDIE------LHGKITSLDLSK-GTETKFAGSSCN------------------------DLVTYDGAGTTIISGHFDK  118 (203)
Q Consensus        70 ~~~~~~------~~~~v~~~~~~~-~~~~~~~~~~~~------------------------~~~~~~~~~~~l~s~s~d~  118 (203)
                      .+..+.      ....|.++.+++ +...++.++...                        ..+.|+|+++.|++++.|+
T Consensus       192 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~  271 (380)
T 3iz6_a          192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG  271 (380)
T ss_dssp             EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred             EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC
Confidence            876652      235688888876 455555443221                        2367899999999999999


Q ss_pred             eEEEEECCCCceEEEEeccc--------eEEEEEecCCcEEEEeecC------------e----------eEEeeeEEEE
Q psy8891         119 KVRFWDFRAEEKVRDIELHG--------KITSLDLSKGKYYFVFAEG------------F----------KVQCDFTRAV  168 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~------------~----------~~~~~~~~~~  168 (203)
                      +|++||+++++++..+..+.        .+.++.++++..+++....            .          .+...+..+.
T Consensus       272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~  351 (380)
T 3iz6_a          272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG  351 (380)
T ss_dssp             CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred             eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence            99999999998877765431        2677788776554443311            0          0112356788


Q ss_pred             EEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         169 FVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       169 ~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      ++|++.+|+||+.|++|++|++..++
T Consensus       352 ~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          352 LSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            99999999999999999999998654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=3.4e-25  Score=186.94  Aligned_cols=176  Identities=22%  Similarity=0.369  Sum_probs=122.2

Q ss_pred             ceEEcCCC-CEEEEEeCCCcEEEEeCCCCC-----e--EEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE
Q psy8891           2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTE-----T--KFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~-----~--~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~   72 (203)
                      |++|+|++ ..|+|||.|++|++||+....     .  ... +......+.++|++++|+||+.|++|+|||+.++..++
T Consensus       387 ~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~  466 (694)
T 3dm0_A          387 AIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR  466 (694)
T ss_dssp             EEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee
Confidence            67888865 689999999999999997532     1  122 22334557889999999999999999999999998888


Q ss_pred             eeeeC-CeEEEEEecCCCceEEEecCCceE--------------------------EEEcCCC--CEEEEeeCCCeEEEE
Q psy8891          73 DIELH-GKITSLDLSKGTETKFAGSSCNDL--------------------------VTYDGAG--TTIISGHFDKKVRFW  123 (203)
Q Consensus        73 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~--~~l~s~s~d~~i~iW  123 (203)
                      .+..| +.|.++++++++..++.++....+                          +.|+|++  ..|++++.|++|++|
T Consensus       467 ~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vw  546 (694)
T 3dm0_A          467 RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW  546 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE
T ss_pred             EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEE
Confidence            87765 568888888877665554433222                          2344443  456677777777777


Q ss_pred             ECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         124 DFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       124 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      |+++++....+..|..                       .+..+.++|++++|++|+.|++|++||+.+++.+..++
T Consensus       547 d~~~~~~~~~~~~h~~-----------------------~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~  600 (694)
T 3dm0_A          547 NLSNCKLRSTLAGHTG-----------------------YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE  600 (694)
T ss_dssp             ETTTCCEEEEECCCSS-----------------------CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred             ECCCCcEEEEEcCCCC-----------------------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence            7766655554443321                       23345566677777777777777777777777666554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=1.1e-25  Score=176.29  Aligned_cols=197  Identities=15%  Similarity=0.177  Sum_probs=137.2

Q ss_pred             ceEEcCCCCEEEEEeC------CCcEEEEeCCCCCe-------EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc
Q psy8891           2 CAKFLGDPTKVVSGSC------DRTLKIWDLRSTET-------KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~------D~~v~lwdl~~~~~-------~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~   68 (203)
                      +++|+|||++|+|||.      |++|++|+..++..       ...+......++|.|++ .+++++.|++|+|||+.++
T Consensus        47 ~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~v~lWd~~~~  125 (357)
T 4g56_B           47 AVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGAVELWEILEK  125 (357)
T ss_dssp             EEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSCEEEC-----
T ss_pred             EEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCEEEEeecccc
Confidence            7899999999999997      78899999876432       11222334457788876 5667889999999999887


Q ss_pred             eEEEee-----eeCCeEEEEEecCCCceEEEecCCceE-----------------------EEEcCCC-CEEEEeeCCCe
Q psy8891          69 EKVRDI-----ELHGKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGAG-TTIISGHFDKK  119 (203)
Q Consensus        69 ~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~-~~l~s~s~d~~  119 (203)
                      +.....     ...+.|.+++++|++..++.+.....+                       +.|++++ ..+++++.|++
T Consensus       126 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~  205 (357)
T 4g56_B          126 ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR  205 (357)
T ss_dssp             ---CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred             ceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc
Confidence            654221     234679999999999888876654433                       4566766 47899999999


Q ss_pred             EEEEECCCCceEEEEecc---ceEEEEEecCC-cEEEEeec--Ce-e---------------EEeeeEEEEEEcCC-CEE
Q psy8891         120 VRFWDFRAEEKVRDIELH---GKITSLDLSKG-KYYFVFAE--GF-K---------------VQCDFTRAVFVVDD-DYV  176 (203)
Q Consensus       120 i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~-~~~~~~~~--~~-~---------------~~~~~~~~~~~~~~-~~l  176 (203)
                      |++||++++++...+...   ..+.++.+++. ..+++...  +. .               ....+..++|+|++ ++|
T Consensus       206 v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l  285 (357)
T 4g56_B          206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFL  285 (357)
T ss_dssp             EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCE
T ss_pred             eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEE
Confidence            999999988876655432   34788888764 33343321  10 0               11245678899987 579


Q ss_pred             EEecCCCcEEEEeCCCceeeeee
Q psy8891         177 AVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       177 ~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                      ++|+.|++|+|||++++++++.+
T Consensus       286 asgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          286 ASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             EEEETTSCEEEECTTSCEEEEEC
T ss_pred             EEEeCCCEEEEEECCCCcEeEEC
Confidence            99999999999999999998876

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.3e-25  Score=170.96  Aligned_cols=171  Identities=16%  Similarity=0.259  Sum_probs=114.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE--E-e--cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc------
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK--F-A--GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE------   68 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~--~-~--~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~------   68 (203)
                      +++|+|+  +|+||+.|++|++||+....  ..  . .  +......+.|+|++++|++|+.|++|+|||+...      
T Consensus        19 ~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~   96 (330)
T 2hes_X           19 SFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFE   96 (330)
T ss_dssp             EEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CC
T ss_pred             eeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccc
Confidence            5778877  99999999999999998642  21  2 1  1222455789999999999999999999998532      


Q ss_pred             -eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC----ceEEEEecc-ceEE
Q psy8891          69 -EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE----EKVRDIELH-GKIT  141 (203)
Q Consensus        69 -~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~----~~~~~~~~~-~~v~  141 (203)
                       +.+..+..| +.|.+++                   |+|+|++|++++.|++|++||++..    +++..+..+ ..|.
T Consensus        97 ~~~~~~~~~h~~~V~~v~-------------------~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  157 (330)
T 2hes_X           97 MDLLAIIEGHENEVKGVA-------------------WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK  157 (330)
T ss_dssp             CEEEEEEC----CEEEEE-------------------ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred             ceeEEEEcCCCCcEEEEE-------------------ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence             233444433 3455554                   4556668888888888888888432    334444444 3577


Q ss_pred             EEEecCCcEEEEeecC--e-e-----------------EEeeeEEEEEEcC--CCEEEEecCCCcEEEEeCCCc
Q psy8891         142 SLDLSKGKYYFVFAEG--F-K-----------------VQCDFTRAVFVVD--DDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       142 ~~~~~~~~~~~~~~~~--~-~-----------------~~~~~~~~~~~~~--~~~l~s~s~d~~v~~wd~~~~  193 (203)
                      ++.++++..+++....  . +                 +...+..+.|+|+  +.+|++|+.|++|++||++++
T Consensus       158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            8777766544443211  0 0                 0113345667887  668999999999999998765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=7e-25  Score=172.33  Aligned_cols=198  Identities=13%  Similarity=0.203  Sum_probs=148.0

Q ss_pred             ceEEcCCC-CEEEEEeCCCcEEEEeCCCCCeE--Ee---cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTETK--FA---GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~~--~~---~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      +++|+|++ .+|++|+.|++|++||+.+.+..  ..   +......+.|.| +++.|++++.|++|++||++.. ....+
T Consensus        78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~  156 (383)
T 3ei3_B           78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVF  156 (383)
T ss_dssp             EEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEE
T ss_pred             EEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEE
Confidence            68999999 89999999999999999875543  22   222344567888 6789999999999999999864 34444


Q ss_pred             eeC----CeEEEEEecCCCceEEEecCCce----------------------EEEEcCCCC-EEEEeeCCCeEEEEECCC
Q psy8891          75 ELH----GKITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGT-TIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        75 ~~~----~~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~-~l~s~s~d~~i~iWd~~~  127 (203)
                      ..+    ..|.++++++++..++.+.....                      .+.|+|+++ +|++++.|++|++||+++
T Consensus       157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          157 AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            322    56999999999888777654332                      356888998 999999999999999987


Q ss_pred             ----CceEEEEeccceEEEEEecC-CcEEEEeecC--ee-------------EE--------------------eeeEEE
Q psy8891         128 ----EEKVRDIELHGKITSLDLSK-GKYYFVFAEG--FK-------------VQ--------------------CDFTRA  167 (203)
Q Consensus       128 ----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~--~~-------------~~--------------------~~~~~~  167 (203)
                          +.++..+.....+.++.+++ +...++....  ..             ..                    .....+
T Consensus       237 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  316 (383)
T 3ei3_B          237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVA  316 (383)
T ss_dssp             CCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEE
T ss_pred             CCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEE
Confidence                66677776667899999988 6554443321  10             00                    011224


Q ss_pred             EEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         168 VFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       168 ~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      .++|++++  +|+.|+.|++||+.+++++.+++++
T Consensus       317 ~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~  349 (383)
T 3ei3_B          317 GRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP  349 (383)
T ss_dssp             ECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred             EecCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence            45566666  7889999999999999999999764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=3.3e-26  Score=183.33  Aligned_cols=180  Identities=12%  Similarity=0.197  Sum_probs=123.1

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCe--EEe---cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTET--KFA---GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~--~~~---~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      |++|+| ++..|++|+.||+|+|||+.+.+.  ...   +......+.|+| ++++|+|||.|++|++||++.+......
T Consensus       124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  203 (435)
T 4e54_B          124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA  203 (435)
T ss_dssp             EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe
Confidence            789999 567899999999999999986542  222   223345677887 6789999999999999999875433222


Q ss_pred             eeCC---eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCc-
Q psy8891          75 ELHG---KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGK-  149 (203)
Q Consensus        75 ~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~-  149 (203)
                      ..+.   .+.+                   +.|+|++.+|++|+.|++|++||++. +.+..+..+ ..|.++.+++.. 
T Consensus       204 ~~~~~~~~~~~-------------------~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          204 SSDTINIWFCS-------------------LDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             CCSSCSCCCCC-------------------EEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS
T ss_pred             ccCCCCccEEE-------------------EEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc
Confidence            1111   1222                   44666777888888888888888764 334444433 457777776543 


Q ss_pred             EEEEeec--Ce-------------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         150 YYFVFAE--GF-------------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       150 ~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      .+++...  +.                   .+...+..+.|+|++.+|++|+.|++|++||+.++++...+..
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~  336 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP  336 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred             eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence            2333221  10                   0112355677889999999999999999999999888776643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=1.2e-25  Score=173.16  Aligned_cols=199  Identities=18%  Similarity=0.231  Sum_probs=139.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe----EEec-CcCceEEEEeC--CCCEEEEecCCCeEEEEECCCce--EEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET----KFAG-SSCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEE--KVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~----~~~~-~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~--~~~   72 (203)
                      +++|+|++++|+|||.|++||+||+.++..    .+.+ ......+.|.+  ++++|+||+.|++|++||+++++  .+.
T Consensus        18 ~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~   97 (316)
T 3bg1_A           18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH   97 (316)
T ss_dssp             EEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE
T ss_pred             EeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE
Confidence            689999999999999999999999986532    1222 22344566754  47899999999999999998863  445


Q ss_pred             eeeeC-CeEEEEEecCC--CceEEEecCCceE--------------------------EEEcCC----------------
Q psy8891          73 DIELH-GKITSLDLSKG--TETKFAGSSCNDL--------------------------VTYDGA----------------  107 (203)
Q Consensus        73 ~~~~~-~~v~~~~~~~~--~~~~~~~~~~~~~--------------------------~~~~~~----------------  107 (203)
                      .+..| +.|.+++++|+  +..++.++....+                          +.|+|+                
T Consensus        98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  177 (316)
T 3bg1_A           98 EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN  177 (316)
T ss_dssp             EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCC
T ss_pred             EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCcc
Confidence            55444 57999999997  4555555443322                          345555                


Q ss_pred             -CCEEEEeeCCCeEEEEECCCCc---eEEEEecc-ceEEEEEecCCc----EEEEeec-C------------------ee
Q psy8891         108 -GTTIISGHFDKKVRFWDFRAEE---KVRDIELH-GKITSLDLSKGK----YYFVFAE-G------------------FK  159 (203)
Q Consensus       108 -~~~l~s~s~d~~i~iWd~~~~~---~~~~~~~~-~~v~~~~~~~~~----~~~~~~~-~------------------~~  159 (203)
                       +.+|++++.|++|++||++...   +...+..| ..|.++.++++.    ..++... .                  ..
T Consensus       178 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~  257 (316)
T 3bg1_A          178 YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL  257 (316)
T ss_dssp             CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCE
T ss_pred             ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhh
Confidence             3689999999999999997542   34444444 358888887753    3333211 0                  00


Q ss_pred             ---EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC-Cc--eeeeeec
Q psy8891         160 ---VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN-TE--QVEAVLK  200 (203)
Q Consensus       160 ---~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~-~~--~~~~~~~  200 (203)
                         +...+..+.|+|++++|++|+.|++|++|+.. .+  +++.+++
T Consensus       258 ~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~  304 (316)
T 3bg1_A          258 LHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVN  304 (316)
T ss_dssp             EEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC
T ss_pred             hhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeecc
Confidence               11235678899999999999999999999976 33  3444443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.94  E-value=3.6e-24  Score=164.51  Aligned_cols=198  Identities=16%  Similarity=0.255  Sum_probs=154.0

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe-----EE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce--E
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET-----KF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE--K   70 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-----~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~--~   70 (203)
                      .+++|+|+++.|++++ |++|++||+.+...     ..   ........+.+.|+++.|++++.|+.|++||++.++  .
T Consensus        55 ~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  133 (337)
T 1gxr_A           55 CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI  133 (337)
T ss_dssp             CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred             EEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce
Confidence            3689999999999999 99999999986431     11   122234457889999999999999999999998876  3


Q ss_pred             EEeeeeC-CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          71 VRDIELH-GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        71 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                      ...+..+ ..+.++++++++..++.+...+.                       .+.|+|+++.|++++.|+.|++||++
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~  213 (337)
T 1gxr_A          134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence            4444444 56999999998887776654332                       25688999999999999999999999


Q ss_pred             CCceEEEEeccceEEEEEecCCcEEEEeec--Cee---------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         127 AEEKVRDIELHGKITSLDLSKGKYYFVFAE--GFK---------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      +++.+..+.....+..+.++++...++...  +..               ....+..+.++|++++|++++.|+.|++||
T Consensus       214 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence            999888888888899999887755444332  110               112456778999999999999999999999


Q ss_pred             CCCceeeeee
Q psy8891         190 CNTEQVEAVL  199 (203)
Q Consensus       190 ~~~~~~~~~~  199 (203)
                      +.+++.+...
T Consensus       294 ~~~~~~~~~~  303 (337)
T 1gxr_A          294 TPYGASIFQS  303 (337)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCeEEEEe
Confidence            9998887554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.8e-25  Score=170.25  Aligned_cols=191  Identities=15%  Similarity=0.243  Sum_probs=129.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCC-------CeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc---
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRST-------ETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE---   68 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~-------~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~---   68 (203)
                      +++|+|++.+|+||+.|++|++||+...       +..  +. +......+.|+|++++|+||+.|++|++||++..   
T Consensus        63 ~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence            6899999999999999999999999532       111  11 2223445788999999999999999999999532   


Q ss_pred             -eEEEeeeeC-CeEEEEEecCCCceEEEecCCceE-------------------------EEEcCC--CCEEEEeeCCCe
Q psy8891          69 -EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDL-------------------------VTYDGA--GTTIISGHFDKK  119 (203)
Q Consensus        69 -~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~--~~~l~s~s~d~~  119 (203)
                       +++..+..| ..|.+++++|++..++.++....+                         +.|+|+  +..|++++.|++
T Consensus       143 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence             345556555 579999999988877766544322                         346677  678999999999


Q ss_pred             EEEEECCCC--------ceEEEEec--cceEEEEEecCCcEEEEeec-----------Ce-e-E-E------e-eeEEEE
Q psy8891         120 VRFWDFRAE--------EKVRDIEL--HGKITSLDLSKGKYYFVFAE-----------GF-K-V-Q------C-DFTRAV  168 (203)
Q Consensus       120 i~iWd~~~~--------~~~~~~~~--~~~v~~~~~~~~~~~~~~~~-----------~~-~-~-~------~-~~~~~~  168 (203)
                      |++||++.+        .+...+..  ...|.++.++++..+.....           +. . . .      . .+..+.
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~  302 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVK  302 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEE
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEE
Confidence            999998754        22222221  24577877775543332211           10 0 0 0      0 345567


Q ss_pred             EEc--CCCEEEEecCCCcEEEEeCCC
Q psy8891         169 FVV--DDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       169 ~~~--~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      ++|  ++++|++|+.|++|++||+++
T Consensus       303 ~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          303 WLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EC-----CCEEEEETTSEEEEEEC--
T ss_pred             EecCCCceEEEEecCCCcEEEEEecc
Confidence            777  678999999999999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=7.8e-25  Score=174.56  Aligned_cols=199  Identities=15%  Similarity=0.249  Sum_probs=145.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce-EEEeeeeC-C
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH-G   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~~-~   78 (203)
                      |++|+|+|++|++|+.|++|++||+.+++.... ..+...+.++.+++..|++|+.|+.+++||.+... .+..+..| .
T Consensus       152 sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~  231 (420)
T 4gga_A          152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ  231 (420)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc
Confidence            789999999999999999999999998765432 12223345566678899999999999999998754 44555544 5


Q ss_pred             eEEEEEecCCCceEEEecCCce---------------------------EEEEcCCC-CEEEE--eeCCCeEEEEECCCC
Q psy8891          79 KITSLDLSKGTETKFAGSSCND---------------------------LVTYDGAG-TTIIS--GHFDKKVRFWDFRAE  128 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~-~~l~s--~s~d~~i~iWd~~~~  128 (203)
                      .+..+.+.+++..++.+...+.                           .+.|.|.+ ..+++  |+.|++|++||++++
T Consensus       232 ~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            6888888888877765544332                           24566654 45544  468999999999999


Q ss_pred             ceEEEEeccceEEEEEecCCcEEEEeecC----e----------e------EEeeeEEEEEEcCCCEEEEecCCCcEEEE
Q psy8891         129 EKVRDIELHGKITSLDLSKGKYYFVFAEG----F----------K------VQCDFTRAVFVVDDDYVAVGSIDGNIYVW  188 (203)
Q Consensus       129 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~----------~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~w  188 (203)
                      ++...+..+..+.++.+.+....++...+    .          .      +...+..++|+|++++|+||+.|++|+||
T Consensus       312 ~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW  391 (420)
T 4gga_A          312 ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  391 (420)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            99998888888888777665444433221    0          0      12246678899999999999999999999


Q ss_pred             eCCCceeeeeec
Q psy8891         189 DCNTEQVEAVLK  200 (203)
Q Consensus       189 d~~~~~~~~~~~  200 (203)
                      |+.+..+.+..+
T Consensus       392 dv~~~~~~~~~~  403 (420)
T 4gga_A          392 RCFELDPARRRE  403 (420)
T ss_dssp             CCSCSSCC----
T ss_pred             ECCCCCccchhh
Confidence            998766655443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=1.9e-24  Score=167.75  Aligned_cols=182  Identities=17%  Similarity=0.381  Sum_probs=125.0

Q ss_pred             ceEEcCC---CCEEEEEeCCCcEEEEeCCC-CCeE---E-ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891           2 CAKFLGD---PTKVVSGSCDRTLKIWDLRS-TETK---F-AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~---~~~l~t~s~D~~v~lwdl~~-~~~~---~-~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~   73 (203)
                      |++|+|+   |.+|++|+.|++|++||+.+ ....   . .+......+.|+|++++|++++.|+.|++||++.++.+..
T Consensus        44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  123 (368)
T 3mmy_A           44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI  123 (368)
T ss_dssp             EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee
Confidence            7899999   59999999999999999986 3332   1 2233345678899999999999999999999999988776


Q ss_pred             eeeCCeEEEEEe--cCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecC----
Q psy8891          74 IELHGKITSLDL--SKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK----  147 (203)
Q Consensus        74 ~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~----  147 (203)
                      ......|.++++  ++++                   .+|++++.|++|++||+++++++..+..+..+..+....    
T Consensus       124 ~~~~~~v~~~~~~~~~~~-------------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 3mmy_A          124 AQHDAPVKTIHWIKAPNY-------------------SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV  184 (368)
T ss_dssp             EECSSCEEEEEEEECSSC-------------------EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred             ccccCceEEEEEEeCCCC-------------------CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence            666677888877  4444                   455555556666666655555444443322211111110    


Q ss_pred             ----------------------------------------Cc--EEEEee--cC----------------eeE---Ee--
Q psy8891         148 ----------------------------------------GK--YYFVFA--EG----------------FKV---QC--  162 (203)
Q Consensus       148 ----------------------------------------~~--~~~~~~--~~----------------~~~---~~--  162 (203)
                                                              ..  ..++..  .+                ...   ..  
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence                                                    00  001100  00                000   00  


Q ss_pred             ----------eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         163 ----------DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       163 ----------~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                                .+..+.++|++++|++|+.|+.|++||+++++++.++++|
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL  314 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence                      3667889999999999999999999999999999998765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=1.5e-24  Score=173.11  Aligned_cols=195  Identities=15%  Similarity=0.206  Sum_probs=144.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC-----------e--EEecC-------------cCceEEEEeCCC--CEEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE-----------T--KFAGS-------------SCNDLVTYDGAG--TTIIS   53 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~-----------~--~~~~~-------------~~~~~~~~~~~~--~~l~s   53 (203)
                      |++|+|++.+|++|+.||+|++||+.+.+           .  .+.++             .....+.|.|++  ..|++
T Consensus        33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s  112 (447)
T 3dw8_B           33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL  112 (447)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence            78999999999999999999999998644           1  12222             224557888887  79999


Q ss_pred             ecCCCeEEEEECCCceEEE---------------------------------------ee--eeCCeEEEEEecCCCceE
Q psy8891          54 GHFDKKVRFWDFRAEEKVR---------------------------------------DI--ELHGKITSLDLSKGTETK   92 (203)
Q Consensus        54 ~~~D~~i~vwd~~~~~~~~---------------------------------------~~--~~~~~v~~~~~~~~~~~~   92 (203)
                      ++.|++|++||+..++...                                       .+  .+...|.++++++++..+
T Consensus       113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  192 (447)
T 3dw8_B          113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETY  192 (447)
T ss_dssp             EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEE
T ss_pred             eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEE
Confidence            9999999999997644321                                       11  133568899999988776


Q ss_pred             EEecCCc-------------------------------eEEEEcCCC-CEEEEeeCCCeEEEEECCCCce----EEEEec
Q psy8891          93 FAGSSCN-------------------------------DLVTYDGAG-TTIISGHFDKKVRFWDFRAEEK----VRDIEL  136 (203)
Q Consensus        93 ~~~~~~~-------------------------------~~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~~----~~~~~~  136 (203)
                      +.+ ...                               ..+.|+|++ ..|++++.|++|++||+++++.    ...+..
T Consensus       193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  271 (447)
T 3dw8_B          193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE  271 (447)
T ss_dssp             EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECC
T ss_pred             EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEecc
Confidence            654 221                               235688888 9999999999999999998876    667766


Q ss_pred             cc-------------eEEEEEecCCcEEEEeecCeeEE-e----------------e----------------eEEEEEE
Q psy8891         137 HG-------------KITSLDLSKGKYYFVFAEGFKVQ-C----------------D----------------FTRAVFV  170 (203)
Q Consensus       137 ~~-------------~v~~~~~~~~~~~~~~~~~~~~~-~----------------~----------------~~~~~~~  170 (203)
                      +.             .+.++.++++..+++......+. .                .                ...+.++
T Consensus       272 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s  351 (447)
T 3dw8_B          272 PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN  351 (447)
T ss_dssp             C-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC
T ss_pred             CCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEEC
Confidence            54             78999998876555543321110 0                0                1127899


Q ss_pred             cCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         171 VDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       171 ~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      |++++|++|+.|+.|++||+.+++.+.
T Consensus       352 ~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          352 GSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             TTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             CCCCEEEEeccCCEEEEEEcCCCccee
Confidence            999999999999999999999988763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=5.1e-25  Score=169.50  Aligned_cols=151  Identities=11%  Similarity=0.210  Sum_probs=105.2

Q ss_pred             CCcEEEEeCCC-CCeEE---ecCcCceEEEEeC---CCCEEEEecCCCeEEEEECCCceEEEeeeeCC----eEEEEEec
Q psy8891          18 DRTLKIWDLRS-TETKF---AGSSCNDLVTYDG---AGTTIISGHFDKKVRFWDFRAEEKVRDIELHG----KITSLDLS   86 (203)
Q Consensus        18 D~~v~lwdl~~-~~~~~---~~~~~~~~~~~~~---~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~----~v~~~~~~   86 (203)
                      |++|++|++.. ++...   .......++++++   ++..|+|||.|++|||||++++++++++..+.    .+..++|+
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS  235 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS  235 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence            89999999844 54322   2333345666666   77899999999999999999999999987432    46677888


Q ss_pred             CCCceEEEec------------CCceEEEEc--------------CCCC------------EEEEeeCCCeEEEEECCCC
Q psy8891          87 KGTETKFAGS------------SCNDLVTYD--------------GAGT------------TIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        87 ~~~~~~~~~~------------~~~~~~~~~--------------~~~~------------~l~s~s~d~~i~iWd~~~~  128 (203)
                      |++..++..+            ....+..|+              |+|+            .+++++.|++|+|||+.++
T Consensus       236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG  315 (356)
T 2w18_A          236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG  315 (356)
T ss_dssp             ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred             CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC
Confidence            8887764422            222333333              3333            4677777778888887777


Q ss_pred             ceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         129 EKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       129 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      +++++++.+..                      ..+..++|+|++++|++|+.|++|||||+
T Consensus       316 k~l~tL~gH~~----------------------~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          316 QCTALLPPVSD----------------------QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SEEEEECCC------------------------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cEEEEecCCCC----------------------CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            77766643321                      01123578899999999999999999995

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.6e-25  Score=176.19  Aligned_cols=195  Identities=15%  Similarity=0.212  Sum_probs=145.6

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCC---CC-----eEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECC---Cce
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRS---TE-----TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR---AEE   69 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~---~~-----~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~---~~~   69 (203)
                      +++|+| ++.+|+||+.|++|++||+.+   ..     ....+......+.+.|+++.|++|+.|++|++||+.   .++
T Consensus        68 ~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  147 (437)
T 3gre_A           68 SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES  147 (437)
T ss_dssp             EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT
T ss_pred             EEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc
Confidence            689999 999999999999999999865   22     122333345567888999999999999999999995   566


Q ss_pred             EEEeeeeCCeEEEEEecCC--CceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec---cceEEEEE
Q psy8891          70 KVRDIELHGKITSLDLSKG--TETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL---HGKITSLD  144 (203)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~---~~~v~~~~  144 (203)
                      .......+ .+..+.+.+.  ......     ....+++++..|++++.|++|++||+++++++..+..   ...+.++.
T Consensus       148 ~~~~~~~~-~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~  221 (437)
T 3gre_A          148 EVKFLNCE-CIRKINLKNFGKNEYAVR-----MRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC  221 (437)
T ss_dssp             EEEEEEEE-EEEEEEGGGGSSCCCEEE-----EEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE
T ss_pred             eeeccccc-eeEEEEccCcccccCceE-----EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE
Confidence            66655554 6777777763  221110     1123678899999999999999999999999988876   36799999


Q ss_pred             ecCCcEEEEeecC------------eeE-------EeeeEEEEEE----cCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         145 LSKGKYYFVFAEG------------FKV-------QCDFTRAVFV----VDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       145 ~~~~~~~~~~~~~------------~~~-------~~~~~~~~~~----~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      ++++...++....            ...       ...+..+.++    +++.+|++|+.|++|++||++++++++++.+
T Consensus       222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  301 (437)
T 3gre_A          222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN  301 (437)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred             ECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence            9887655554321            000       1134455343    4677999999999999999999999998876


Q ss_pred             C
Q psy8891         202 M  202 (203)
Q Consensus       202 ~  202 (203)
                      |
T Consensus       302 ~  302 (437)
T 3gre_A          302 S  302 (437)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.94  E-value=5.1e-24  Score=175.39  Aligned_cols=198  Identities=21%  Similarity=0.293  Sum_probs=153.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-C
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-G   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~   78 (203)
                      +++|+|++..|++++.|++|++||+........  .......++++|+++.|++++.|+.|++||. +++.+..+..| .
T Consensus       308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~  386 (577)
T 2ymu_A          308 GVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS  386 (577)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSS
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCC
Confidence            578999999999999999999999876543322  2222345678999999999999999999996 45556666544 6


Q ss_pred             eEEEEEecCCCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891          79 KITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      .|.+++++|++..++.+.....                      .+.|+|++++|++++.|++|++||.. ++.+..+..
T Consensus       387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~  465 (577)
T 2ymu_A          387 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTG  465 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcC
Confidence            7999999999888776554332                      25688999999999999999999964 566666665


Q ss_pred             c-ceEEEEEecCCcEEEEeecC-ee----------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         137 H-GKITSLDLSKGKYYFVFAEG-FK----------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       137 ~-~~v~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                      + ..+.++.++++..+++.... ..                +...++.++|+|++++|++++.|++|++||. +++++++
T Consensus       466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~  544 (577)
T 2ymu_A          466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT  544 (577)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence            4 56888999887655554321 00                1124567889999999999999999999996 5889999


Q ss_pred             eccC
Q psy8891         199 LKDM  202 (203)
Q Consensus       199 ~~~~  202 (203)
                      +++|
T Consensus       545 ~~~h  548 (577)
T 2ymu_A          545 LTGH  548 (577)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            8876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=1e-23  Score=167.11  Aligned_cols=196  Identities=15%  Similarity=0.226  Sum_probs=144.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--c-CcCceEEEEeCCCCEEEEecCCCeEEEEECCC-ceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--G-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~-~~~~~~~~~~   77 (203)
                      +++|+|++..|++|+.||+|++||+.+.+....  . ......+.+  +++.|++|+.|+.|++||++. ......+..|
T Consensus       139 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  216 (401)
T 4aez_A          139 SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH  216 (401)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             EEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence            689999999999999999999999988664322  1 222233444  568999999999999999984 4555566544


Q ss_pred             -CeEEEEEecCCCceEEEecCCceE-----------------------EEEcCCC-CEEEEee--CCCeEEEEECCCCce
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGAG-TTIISGH--FDKKVRFWDFRAEEK  130 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~-~~l~s~s--~d~~i~iWd~~~~~~  130 (203)
                       +.|.++++++++..++.+...+.+                       +.|+|++ ..+++++  .|+.|++||++++++
T Consensus       217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence             679999999998888776654332                       4677765 5666654  799999999999999


Q ss_pred             EEEEeccceEEEEEecCCcEEEEeec----Cee-----------E-------EeeeEEEEEEcCCCEEEEecCCCcEEEE
Q psy8891         131 VRDIELHGKITSLDLSKGKYYFVFAE----GFK-----------V-------QCDFTRAVFVVDDDYVAVGSIDGNIYVW  188 (203)
Q Consensus       131 ~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~-----------~-------~~~~~~~~~~~~~~~l~s~s~d~~v~~w  188 (203)
                      +..+..+..+.++.++++...++...    +..           .       ...+..+.++|++.+|++++.|+.|++|
T Consensus       297 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw  376 (401)
T 4aez_A          297 VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW  376 (401)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred             EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            99998888899999988765555422    110           0       1134567789999999999999999999


Q ss_pred             eCCCceeeeee
Q psy8891         189 DCNTEQVEAVL  199 (203)
Q Consensus       189 d~~~~~~~~~~  199 (203)
                      |+.+++.++..
T Consensus       377 ~~~~~~~~~~~  387 (401)
T 4aez_A          377 RVYDGDHVKRP  387 (401)
T ss_dssp             ECCC-------
T ss_pred             ECCCCcccccc
Confidence            99998887654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.6e-24  Score=167.07  Aligned_cols=198  Identities=14%  Similarity=0.164  Sum_probs=151.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCC-----CeEEEEECCCceEE---
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFD-----KKVRFWDFRAEEKV---   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D-----~~i~vwd~~~~~~~---   71 (203)
                      +++|+|+++.|++++.|++|++||+.+.+...  ........+.+.|+++.+++++.+     +.|++||++.....   
T Consensus        79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~  158 (369)
T 3zwl_B           79 SIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL  158 (369)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence            68899999999999999999999999876532  233334557889999999999999     99999999765321   


Q ss_pred             --------EeeeeC-C--eEEEEEecCCCceEEEecCCce------------------------EEEEcCCCCEEEEeeC
Q psy8891          72 --------RDIELH-G--KITSLDLSKGTETKFAGSSCND------------------------LVTYDGAGTTIISGHF  116 (203)
Q Consensus        72 --------~~~~~~-~--~v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~s~s~  116 (203)
                              ..+..+ +  .+.++++++++..++.+...+.                        .+.|+|++..|++++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  238 (369)
T 3zwl_B          159 TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR  238 (369)
T ss_dssp             EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC
Confidence                    111111 2  6888888888777665543322                        2568899999999999


Q ss_pred             CCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCee--------------------------------EEeee
Q psy8891         117 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK--------------------------------VQCDF  164 (203)
Q Consensus       117 d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~  164 (203)
                      |+.|++||+++++.+..+.....+..+.+++....++......                                ....+
T Consensus       239 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v  318 (369)
T 3zwl_B          239 DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL  318 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcE
Confidence            9999999999999998888778888888887655544322100                                11245


Q ss_pred             EEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         165 TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       165 ~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                      ..+.++|++++|++|+.|+.|++|+++++.....+
T Consensus       319 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  353 (369)
T 3zwl_B          319 NTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY  353 (369)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence            66789999999999999999999999877655544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.6e-24  Score=186.26  Aligned_cols=190  Identities=11%  Similarity=0.095  Sum_probs=134.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec--CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG--SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK   79 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~   79 (203)
                      |++|+|++++||+|+.|++|++||....+.....  ......+.|.| +++|+|++.|++|+|||+++++.+..+..++.
T Consensus        22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~  100 (902)
T 2oaj_A           22 AAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGK  100 (902)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCC
Confidence            7899999999999999999999999876544322  22345577888 78999999999999999999998888887788


Q ss_pred             EEEEEecCCCceEEEecCCceE----------------------------------EEEcCC-CCEEEEeeCCCeEEEEE
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDL----------------------------------VTYDGA-GTTIISGHFDKKVRFWD  124 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~-~~~l~s~s~d~~i~iWd  124 (203)
                      |.+++++|++..++.+...+.+                                  +.|+|+ +..|++++.|++| +||
T Consensus       101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd  179 (902)
T 2oaj_A          101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS  179 (902)
T ss_dssp             EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence            9999998887766655433222                                  344453 3567777777777 777


Q ss_pred             CCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         125 FRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                      ++++++++.+..+....  ........   .........+..+.|+|++.+|++|+.|++|++||+++++++..
T Consensus       180 ~~~~~~~~~~~~~~~~g--~~~~~~~~---~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          180 LVENEIKQSFIYELPPF--APGGDFSE---KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA  248 (902)
T ss_dssp             TTTTEEEEEECCCBCTT--CCCSTTCC---CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             CCCCceEEEEecccCCc--CCCccccc---ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence            77776665554330000  00000000   00000112356788999999999999999999999999988753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.93  E-value=5.8e-24  Score=181.42  Aligned_cols=201  Identities=21%  Similarity=0.284  Sum_probs=157.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      +++|+|++.+|++|+.||+|++||+.+++..  .. +......+.|+|+++.|++|+.|+.|+|||+.+++.+..+..| 
T Consensus        18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~   97 (814)
T 3mkq_A           18 GIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP   97 (814)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence            6899999999999999999999999886543  22 3333556789999999999999999999999999988888754 


Q ss_pred             CeEEEEEecCCCceEEEecCCce------------------------EEEEcC-CCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCND------------------------LVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~-~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      +.|.+++++|++..++.+.....                        .+.|+| ++..|++++.|++|++||+.+++...
T Consensus        98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~  177 (814)
T 3mkq_A           98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF  177 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred             CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence            67999999999888776554332                        256888 78899999999999999999887776


Q ss_pred             EEecc--ceEEEEEecC--CcEEEEeec--C----------ee------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         133 DIELH--GKITSLDLSK--GKYYFVFAE--G----------FK------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       133 ~~~~~--~~v~~~~~~~--~~~~~~~~~--~----------~~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      .+..+  ..+..+.+++  +...++...  +          ..      ....+..+.++|++.+|++|+.|+.|++||+
T Consensus       178 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~  257 (814)
T 3mkq_A          178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS  257 (814)
T ss_dssp             EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            66544  4577777765  443333221  1          00      1124567789999999999999999999999


Q ss_pred             CCceeeeeeccC
Q psy8891         191 NTEQVEAVLKDM  202 (203)
Q Consensus       191 ~~~~~~~~~~~~  202 (203)
                      .+++++.+++.+
T Consensus       258 ~~~~~~~~~~~~  269 (814)
T 3mkq_A          258 STYKVEKTLNVG  269 (814)
T ss_dssp             TTCSEEEEECCS
T ss_pred             CCCcEEEEeecC
Confidence            999998888654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.93  E-value=1.4e-23  Score=160.73  Aligned_cols=190  Identities=15%  Similarity=0.209  Sum_probs=139.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce-EEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~~   77 (203)
                      +++|+|++++|++|+.|++|++||+.+++...  . +......+.++|++++|+||+.|++|++||++.+. ....+..|
T Consensus        60 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h  139 (304)
T 2ynn_A           60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (304)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc
Confidence            67899999999999999999999999876532  2 22334567889999999999999999999998874 44555554


Q ss_pred             -CeEEEEEecC-CCceEEEecCCceEE------------------------EEcC--CCCEEEEeeCCCeEEEEECCCCc
Q psy8891          78 -GKITSLDLSK-GTETKFAGSSCNDLV------------------------TYDG--AGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        78 -~~v~~~~~~~-~~~~~~~~~~~~~~~------------------------~~~~--~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                       ..|.+++++| +...++.++....+.                        .|.|  ++.+|++++.|++|++||+++++
T Consensus       140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~  219 (304)
T 2ynn_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (304)
T ss_dssp             CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence             5699999998 556676666554433                        3333  67799999999999999999999


Q ss_pred             eEEEEecc-ceEEEEEecCCcEEEEeecC--e---------eE-------EeeeEEEEEEcCCC--EEEEecCCCcEEEE
Q psy8891         130 KVRDIELH-GKITSLDLSKGKYYFVFAEG--F---------KV-------QCDFTRAVFVVDDD--YVAVGSIDGNIYVW  188 (203)
Q Consensus       130 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~--~---------~~-------~~~~~~~~~~~~~~--~l~s~s~d~~v~~w  188 (203)
                      ++..+..| ..+..+.++++...++....  .         ..       ...+..+.+.|++.  ++++|+. ..+.+|
T Consensus       220 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~  298 (304)
T 2ynn_A          220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGFTVL  298 (304)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEET-TEEEEE
T ss_pred             cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecC-CceEEE
Confidence            99888876 45888888887665554321  0         00       11234566778765  4676664 557777


Q ss_pred             eCCC
Q psy8891         189 DCNT  192 (203)
Q Consensus       189 d~~~  192 (203)
                      ++..
T Consensus       299 ~~~~  302 (304)
T 2ynn_A          299 SLGN  302 (304)
T ss_dssp             ECC-
T ss_pred             Eecc
Confidence            7654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.93  E-value=6e-24  Score=165.66  Aligned_cols=179  Identities=13%  Similarity=0.164  Sum_probs=136.5

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee-
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-   74 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~-   74 (203)
                      .+++|+|++++|++|+.|++|++||+.+.+  ..  +. +......+.+.|++++|++++.|+.|++||++.++..... 
T Consensus        12 ~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   91 (372)
T 1k8k_C           12 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV   91 (372)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEE
Confidence            378999999999999999999999998764  22  22 2233455788999999999999999999999888754333 


Q ss_pred             --eeCCeEEEEEecCCCceEEEecCCc---------------------------eEEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891          75 --ELHGKITSLDLSKGTETKFAGSSCN---------------------------DLVTYDGAGTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        75 --~~~~~v~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~s~s~d~~i~iWd~  125 (203)
                        .....|.++++++++..++.+....                           ..+.|+|++++|++++.|++|++||+
T Consensus        92 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (372)
T 1k8k_C           92 ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA  171 (372)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence              2346799999999887766554322                           12467888999999999999999996


Q ss_pred             C------------------CCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEE
Q psy8891         126 R------------------AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYV  187 (203)
Q Consensus       126 ~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~  187 (203)
                      +                  .++++..+..+                       ...+..+.++|++++|++++.|+.|++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~v~~~~~~~~~~~l~~~~~d~~i~i  228 (372)
T 1k8k_C          172 YIKEVEERPAPTPWGSKMPFGELMFESSSS-----------------------CGWVHGVCFSANGSRVAWVSHDSTVCL  228 (372)
T ss_dssp             CCTTTSCCCCCBTTBSCCCTTCEEEECCCC-----------------------SSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             ccccccccccccccccccchhhheEecCCC-----------------------CCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence            5                  23333333211                       112445667789999999999999999


Q ss_pred             EeCCCceeeeeeccC
Q psy8891         188 WDCNTEQVEAVLKDM  202 (203)
Q Consensus       188 wd~~~~~~~~~~~~~  202 (203)
                      ||+++++++.+++.|
T Consensus       229 ~d~~~~~~~~~~~~~  243 (372)
T 1k8k_C          229 ADADKKMAVATLASE  243 (372)
T ss_dssp             EEGGGTTEEEEEECS
T ss_pred             EECCCCceeEEEccC
Confidence            999999999988765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=1.9e-24  Score=169.75  Aligned_cols=141  Identities=13%  Similarity=0.123  Sum_probs=96.7

Q ss_pred             EEEEeCCCCEEE--EecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCce------------------
Q psy8891          41 LVTYDGAGTTII--SGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCND------------------  100 (203)
Q Consensus        41 ~~~~~~~~~~l~--s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------------  100 (203)
                      .++|+||+++|+  |++.|++|||||+++++++..+..++.|.+++|+|++..++.+.....                  
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~  217 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFD  217 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCC
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCC
Confidence            467889999765  667899999999999999888887788888888877665544322110                  


Q ss_pred             ------EEEEcCCCCEEEEeeCCC----eEEEEECCCCceEEE--EeccceEEEEEecCCcEEEEeecCeeEEeeeEEEE
Q psy8891         101 ------LVTYDGAGTTIISGHFDK----KVRFWDFRAEEKVRD--IELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAV  168 (203)
Q Consensus       101 ------~~~~~~~~~~l~s~s~d~----~i~iWd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (203)
                            .+.|+|++..+++++.|+    ++++||+........  ....                     .....++.+.
T Consensus       218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------~~~~~V~~~~  276 (365)
T 4h5i_A          218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT---------------------NRFKGITSMD  276 (365)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE---------------------SSCSCEEEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec---------------------CCCCCeEeEE
Confidence                  134556666666666555    455555543322100  0000                     0011345677


Q ss_pred             EEcCCCEEEEecCCCcEEEEeCCCceeeeee-ccC
Q psy8891         169 FVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL-KDM  202 (203)
Q Consensus       169 ~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~-~~~  202 (203)
                      |+|++++|++|+.|++|+|||++++++++++ ++|
T Consensus       277 ~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH  311 (365)
T 4h5i_A          277 VDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH  311 (365)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred             ECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence            8899999999999999999999999999986 454

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=1.2e-25  Score=176.08  Aligned_cols=194  Identities=12%  Similarity=0.101  Sum_probs=129.2

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCC--CeE--Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce---EEE
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST--ETK--FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE---KVR   72 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~--~~~--~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~---~~~   72 (203)
                      .|++|+|++++|++|+.|++|++||+.+.  +..  +. +......+.++|++++|++++.|++|++||+..++   ...
T Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~   94 (377)
T 3dwl_C           15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL   94 (377)
T ss_dssp             SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEE
T ss_pred             EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee
Confidence            47899999999999999999999999875  221  11 22234557889999999999999999999998876   333


Q ss_pred             eee-eCCeEEEEEecCCCceEEEecCCc---------------------------eEEEEcCCCCEEEEeeCCCeEEEEE
Q psy8891          73 DIE-LHGKITSLDLSKGTETKFAGSSCN---------------------------DLVTYDGAGTTIISGHFDKKVRFWD  124 (203)
Q Consensus        73 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~s~s~d~~i~iWd  124 (203)
                      .+. ....|.+++++|++..++.+....                           ..+.|+|++++|++++.|++|++||
T Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd  174 (377)
T 3dwl_C           95 VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLS  174 (377)
T ss_dssp             ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEE
T ss_pred             EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            333 346799999998877665443221                           2356888999999999999999999


Q ss_pred             CCCCceEEEEeccceEEEEEecCC--cEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee----eee
Q psy8891         125 FRAEEKVRDIELHGKITSLDLSKG--KYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV----EAV  198 (203)
Q Consensus       125 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~----~~~  198 (203)
                      ++..+.........      ....  ..... .. +.....+..+.|+|++++|++|+.|++|++||+.+++.    +.+
T Consensus       175 ~~~~~~~~~~~~~~------~~~~~~~~~~~-~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  246 (377)
T 3dwl_C          175 AYVRDVDAKPEASV------WGSRLPFNTVC-AE-YPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT  246 (377)
T ss_dssp             ECCSSCC-CCCSCS------SCSCCCEEEEE-EC-CCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred             EEecccCCCccccc------cccccchhhhh-hc-ccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence            86443211000000      0000  00000 00 01122355677889999999999999999999999887    777


Q ss_pred             eccC
Q psy8891         199 LKDM  202 (203)
Q Consensus       199 ~~~~  202 (203)
                      +++|
T Consensus       247 ~~~~  250 (377)
T 3dwl_C          247 VKLS  250 (377)
T ss_dssp             EECS
T ss_pred             ecCC
Confidence            7654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=1.8e-23  Score=172.13  Aligned_cols=198  Identities=22%  Similarity=0.307  Sum_probs=150.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee-eCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE-LHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~-~~~   78 (203)
                      +++|+|++..|++++.|++|++||....... ..+ ......++++|+++.|++++.|++|++||+..... ..+. ...
T Consensus       267 ~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~~~~  345 (577)
T 2ymu_A          267 GVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSS  345 (577)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEECCCSS
T ss_pred             EEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEeCCCC
Confidence            5789999999999999999999998654322 222 22234567899999999999999999999876544 3443 346


Q ss_pred             eEEEEEecCCCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891          79 KITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      .+.+++++|++..++.+.....                      .+.|+|+|+.|++++.|++|++||. +++.+..+..
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~  424 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG  424 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence            7999999999888776654332                      2568899999999999999999995 4666766665


Q ss_pred             c-ceEEEEEecCCcEEEEeecC-ee----------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         137 H-GKITSLDLSKGKYYFVFAEG-FK----------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       137 ~-~~v~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                      + ..+..+.++++...++.... ..                ....+..+.|+|++++|++++.|++|++||. +++++++
T Consensus       425 ~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~  503 (577)
T 2ymu_A          425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT  503 (577)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEE
Confidence            5 45888888887655543321 00                1124567889999999999999999999996 5888888


Q ss_pred             eccC
Q psy8891         199 LKDM  202 (203)
Q Consensus       199 ~~~~  202 (203)
                      +++|
T Consensus       504 ~~~h  507 (577)
T 2ymu_A          504 LTGH  507 (577)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            8776

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.93  E-value=3.8e-23  Score=163.91  Aligned_cols=190  Identities=13%  Similarity=0.182  Sum_probs=146.3

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-C
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-G   78 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~   78 (203)
                      ..|++++++|++|+.|++|++||+.+.+....   +......+.|+|++++|++|+.|++|++||+++++.+..+..| +
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  182 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA  182 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC
Confidence            46799999999999999999999987665432   2223455788999999999999999999999999888887755 6


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEE-----------------------------------------------cCCCCEE
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTY-----------------------------------------------DGAGTTI  111 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~l  111 (203)
                      .|.+++++|++..++.++....+..|                                               +|++++|
T Consensus       183 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE
Confidence            79999999999888877665544333                                               4678899


Q ss_pred             EEeeCCCeEEEEECCCCceEEEEec--cceEEEEEecCCcE-EEEeec--Ce--------------eEE---eeeEEEEE
Q psy8891         112 ISGHFDKKVRFWDFRAEEKVRDIEL--HGKITSLDLSKGKY-YFVFAE--GF--------------KVQ---CDFTRAVF  169 (203)
Q Consensus       112 ~s~s~d~~i~iWd~~~~~~~~~~~~--~~~v~~~~~~~~~~-~~~~~~--~~--------------~~~---~~~~~~~~  169 (203)
                      ++++.|+.|++||+++++....+..  ...+.++.++++.. +++...  +.              ...   .......+
T Consensus       263 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~  342 (420)
T 3vl1_A          263 IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY  342 (420)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE
T ss_pred             EEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE
Confidence            9999999999999999887777654  24688998887654 333321  11              000   11233446


Q ss_pred             EcCCCEEEEecCCCcEEEEeCCC
Q psy8891         170 VVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       170 ~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      .+++++|++++.|+.|++||+..
T Consensus       343 ~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          343 FAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EETTEEEEEETTTEEEEEEEECC
T ss_pred             eCCCCEEEEecCCccEEEEeccC
Confidence            67889999999999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=2.3e-23  Score=167.53  Aligned_cols=144  Identities=22%  Similarity=0.358  Sum_probs=101.4

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-Ce
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GK   79 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~   79 (203)
                      .+.+++..|+||+.|++|++||+.+++....   +......+.+.+++ .|++|+.|++|++||+++++.+..+..| +.
T Consensus       127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~  205 (464)
T 3v7d_B          127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST  205 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCc
Confidence            3455788999999999999999988765322   22234456677766 9999999999999999999988888754 67


Q ss_pred             EEEEEecC--CCceEEEecCCceEEE--------------------------------------------EcCCCCEEEE
Q psy8891          80 ITSLDLSK--GTETKFAGSSCNDLVT--------------------------------------------YDGAGTTIIS  113 (203)
Q Consensus        80 v~~~~~~~--~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~l~s  113 (203)
                      |.++++.+  ++..+++++....+..                                            +++++..+++
T Consensus       206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  285 (464)
T 3v7d_B          206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS  285 (464)
T ss_dssp             EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEE
T ss_pred             cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEE
Confidence            88888874  4455555444333322                                            3344667888


Q ss_pred             eeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCC
Q psy8891         114 GHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKG  148 (203)
Q Consensus       114 ~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~  148 (203)
                      ++.|++|++||+++++++..+..+ ..+.++.++++
T Consensus       286 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  321 (464)
T 3v7d_B          286 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE  321 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred             EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence            888888888888777776666543 33555555443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=3.9e-23  Score=158.70  Aligned_cols=165  Identities=19%  Similarity=0.317  Sum_probs=134.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      +++|+|++..+++++.|+.|++||+++.+...  . +......+.+.|+++.|++++.|+.|++||++.++.+..+....
T Consensus       146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  225 (337)
T 1gxr_A          146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS  225 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCC
Confidence            57899999999999999999999998865432  2 22234457789999999999999999999999999888888888


Q ss_pred             eEEEEEecCCCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891          79 KITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      .+.+++++|++..++.+.....                      .+.|+|++++|++++.|+.|++||+.+++.+.....
T Consensus       226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~  305 (337)
T 1gxr_A          226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE  305 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecC
Confidence            8999999999888776654332                      256889999999999999999999998876644333


Q ss_pred             cceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         137 HGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       137 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      ...+                        ..+.++|++++|++++.|+.|++||+
T Consensus       306 ~~~v------------------------~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          306 SSSV------------------------LSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSCE------------------------EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCcE------------------------EEEEECCCCCEEEEecCCCeEEEEEE
Confidence            3333                        34556789999999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=1.1e-23  Score=163.57  Aligned_cols=185  Identities=17%  Similarity=0.245  Sum_probs=121.4

Q ss_pred             ceEEcCC----CCEEEEEeCCCcEEEEeCCCCCeE--Ee-cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891           2 CAKFLGD----PTKVVSGSCDRTLKIWDLRSTETK--FA-GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~----~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~~~   73 (203)
                      +++|+|+    +.+|++|+.|++|++||+.+.+..  +. +......+.+.| +++.|++|+.|+.|++||+++++.+..
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  153 (366)
T 3k26_A           74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI  153 (366)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence            6789998    668999999999999999886643  22 233345577888 889999999999999999999988777


Q ss_pred             e----eeCCeEEEEEecCCCceEEEecCCceEEEEcCC------------------------------------------
Q psy8891          74 I----ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA------------------------------------------  107 (203)
Q Consensus        74 ~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------  107 (203)
                      +    .....|.++++++++..++.+...+.+..|+..                                          
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence            6    234678888887766655555444444444321                                          


Q ss_pred             -------CCEEEEeeCCCeEEEEECCCCceEE-EEeccc-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcC--CCEE
Q psy8891         108 -------GTTIISGHFDKKVRFWDFRAEEKVR-DIELHG-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVD--DDYV  176 (203)
Q Consensus       108 -------~~~l~s~s~d~~i~iWd~~~~~~~~-~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l  176 (203)
                             +.+|++++.|+.|++||+++++... .+.... .+..         ....  ......+..+.++|+  +++|
T Consensus       234 v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          234 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI---------LGRF--DYSQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             CCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEE---------EEEE--ECSSCCSSCCCCEECTTSSEE
T ss_pred             EEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchhe---------eccc--cccCCcEEEEEEcCCCCCcEE
Confidence                   4456666666666666655443200 000000 0000         0000  000112344567788  9999


Q ss_pred             EEecCCCcEEEEeCCCceeee
Q psy8891         177 AVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       177 ~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      ++|+.|+.|++||+++++++.
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~  323 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHK  323 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGG
T ss_pred             EEEecCCcEEEEECCCCCCcc
Confidence            999999999999999887544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.93  E-value=3.9e-23  Score=157.82  Aligned_cols=197  Identities=15%  Similarity=0.240  Sum_probs=133.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++||+++ .|++| .|++|||||+.+++..  +...   .....+.++|++++|+||+.|++|++||+++++.++.+..
T Consensus        30 ~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~  107 (318)
T 4ggc_A           30 LVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS  107 (318)
T ss_dssp             CEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC
Confidence            57899886 56655 5999999999987753  2222   2245578999999999999999999999999999888776


Q ss_pred             CC-eEEEEEecCCCceEEEecC------------------------CceEEEEcCCCCEEEEeeCCCeEEEEECCCCceE
Q psy8891          77 HG-KITSLDLSKGTETKFAGSS------------------------CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV  131 (203)
Q Consensus        77 ~~-~v~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~  131 (203)
                      |. .+..+...+  ..++.+..                        ......+.++++.|++++.|++|++||+++++..
T Consensus       108 h~~~~~~~~~~~--~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  185 (318)
T 4ggc_A          108 HSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  185 (318)
T ss_dssp             CSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred             ccceEEEeecCC--CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence            53 344443322  22222221                        1233567889999999999999999999876532


Q ss_pred             ----EEE-eccceEEEEEecCCc-EEE-E-eecC------------e-----eEEeeeEEEEEEcCCCEEEEe--cCCCc
Q psy8891         132 ----RDI-ELHGKITSLDLSKGK-YYF-V-FAEG------------F-----KVQCDFTRAVFVVDDDYVAVG--SIDGN  184 (203)
Q Consensus       132 ----~~~-~~~~~v~~~~~~~~~-~~~-~-~~~~------------~-----~~~~~~~~~~~~~~~~~l~s~--s~d~~  184 (203)
                          ... .....+..+...+.. ..+ . ....            .     .....+....+.++++.++++  +.|+.
T Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~  265 (318)
T 4ggc_A          186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ  265 (318)
T ss_dssp             SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred             ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE
Confidence                111 122345555554321 111 1 1100            0     011234567788888887664  48999


Q ss_pred             EEEEeCCCceeeeeeccC
Q psy8891         185 IYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       185 v~~wd~~~~~~~~~~~~~  202 (203)
                      |++||+.++++++++++|
T Consensus       266 i~iwd~~~~~~~~~l~gH  283 (318)
T 4ggc_A          266 LVIWKYPTMAKVAELKGH  283 (318)
T ss_dssp             EEEEETTTCCEEEEECCC
T ss_pred             EEEEECCCCcEEEEEcCC
Confidence            999999999999999887

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2e-23  Score=162.72  Aligned_cols=192  Identities=17%  Similarity=0.264  Sum_probs=142.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE--Ee-cCcCceEEEEeCC--CCEEEEecCCCeEEEEECCCce--EEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK--FA-GSSCNDLVTYDGA--GTTIISGHFDKKVRFWDFRAEE--KVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~--~~-~~~~~~~~~~~~~--~~~l~s~~~D~~i~vwd~~~~~--~~~   72 (203)
                      +++|+|++.+|++|+.|++|++||+....  ..  +. +......+.|.++  +++|++|+.|+.|++||++.++  .+.
T Consensus        16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~   95 (379)
T 3jrp_A           16 DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA   95 (379)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEee
Confidence            68999999999999999999999997432  21  22 2223445677766  8899999999999999999886  455


Q ss_pred             eeee-CCeEEEEEecCC--CceEEEecCCce-------------------------EEEEcC-------------CCCEE
Q psy8891          73 DIEL-HGKITSLDLSKG--TETKFAGSSCND-------------------------LVTYDG-------------AGTTI  111 (203)
Q Consensus        73 ~~~~-~~~v~~~~~~~~--~~~~~~~~~~~~-------------------------~~~~~~-------------~~~~l  111 (203)
                      .+.. ...|.+++++|+  +..++.+.....                         .+.|+|             ++..|
T Consensus        96 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l  175 (379)
T 3jrp_A           96 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  175 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred             eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence            5543 467999999998  666666544332                         256778             68999


Q ss_pred             EEeeCCCeEEEEECCCCceE----EEEecc-ceEEEEEecCC---cEEEEeecC--e---------------e------E
Q psy8891         112 ISGHFDKKVRFWDFRAEEKV----RDIELH-GKITSLDLSKG---KYYFVFAEG--F---------------K------V  160 (203)
Q Consensus       112 ~s~s~d~~i~iWd~~~~~~~----~~~~~~-~~v~~~~~~~~---~~~~~~~~~--~---------------~------~  160 (203)
                      ++++.|++|++||++++...    ..+..+ ..+.++.++++   ..+++....  .               .      .
T Consensus       176 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  255 (379)
T 3jrp_A          176 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF  255 (379)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred             EEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC
Confidence            99999999999999876533    333333 45889999887   555544321  0               0      1


Q ss_pred             EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       161 ~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                      ...+..+.++|++++|++++.|+.|++||++.+
T Consensus       256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          256 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             SSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            123567789999999999999999999998743

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-23  Score=166.09  Aligned_cols=201  Identities=11%  Similarity=0.204  Sum_probs=153.5

Q ss_pred             ceEEcCCCC-EEEEE----------eCCCcEEEEeCCCCC---eE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEEC
Q psy8891           2 CAKFLGDPT-KVVSG----------SCDRTLKIWDLRSTE---TK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF   65 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~----------s~D~~v~lwdl~~~~---~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~   65 (203)
                      +++|+|+++ +|++|          +.|++|++||+.+..   ..  ..+......+.|+|++++|++|+.|+.|++||+
T Consensus        17 ~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~   96 (416)
T 2pm9_A           17 TFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYST   96 (416)
T ss_dssp             BCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECC
T ss_pred             eEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeec
Confidence            789999997 99999          899999999998643   11  222233455788999999999999999999999


Q ss_pred             CC----ceEEEeeeeC-CeEEEEEecCC-CceEEEecCCc--------------------------------eEEEEcCC
Q psy8891          66 RA----EEKVRDIELH-GKITSLDLSKG-TETKFAGSSCN--------------------------------DLVTYDGA  107 (203)
Q Consensus        66 ~~----~~~~~~~~~~-~~v~~~~~~~~-~~~~~~~~~~~--------------------------------~~~~~~~~  107 (203)
                      ..    .+.+..+..| +.|.+++++|+ +..++.+....                                ..+.|+|+
T Consensus        97 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  176 (416)
T 2pm9_A           97 NEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS  176 (416)
T ss_dssp             SSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSS
T ss_pred             ccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCC
Confidence            87    3455566544 67999999997 66665443211                                13678888


Q ss_pred             -CCEEEEeeCCCeEEEEECCCCceEEEEecc-------ceEEEEEecCCc-EEEEe-ecC----e---------------
Q psy8891         108 -GTTIISGHFDKKVRFWDFRAEEKVRDIELH-------GKITSLDLSKGK-YYFVF-AEG----F---------------  158 (203)
Q Consensus       108 -~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-------~~v~~~~~~~~~-~~~~~-~~~----~---------------  158 (203)
                       +.+|++++.|++|++||+++++.+..+..+       ..+.++.++++. .+++. ...    .               
T Consensus       177 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~  256 (416)
T 2pm9_A          177 LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT  256 (416)
T ss_dssp             CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred             CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence             789999999999999999999888887763       568889888763 23332 111    0               


Q ss_pred             ---eEEeeeEEEEEEc-CCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         159 ---KVQCDFTRAVFVV-DDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       159 ---~~~~~~~~~~~~~-~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                         .....+..+.++| ++.+|++++.|+.|++||+++++++.++++|
T Consensus       257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~  304 (416)
T 2pm9_A          257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR  304 (416)
T ss_dssp             CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred             eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence               0122456778888 8999999999999999999999999998765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.93  E-value=2e-22  Score=154.83  Aligned_cols=198  Identities=13%  Similarity=0.182  Sum_probs=142.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC----eE--Ee-cCcCceEEEEeC--CCCEEEEecCCCeEEEEECCCc----
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE----TK--FA-GSSCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAE----   68 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~----~~--~~-~~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~----   68 (203)
                      +++|+|++.+|++|+.|++|++||+.+..    ..  +. +......+.|.|  ++++|++|+.|++|++||++.+    
T Consensus        16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~   95 (351)
T 3f3f_A           16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC   95 (351)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence            78999999999999999999999998643    11  12 223345567877  5899999999999999999876    


Q ss_pred             -----eEEEeeee-CCeEEEEEecCC--CceEEEecCCceEEEEc-----------------------------------
Q psy8891          69 -----EKVRDIEL-HGKITSLDLSKG--TETKFAGSSCNDLVTYD-----------------------------------  105 (203)
Q Consensus        69 -----~~~~~~~~-~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~-----------------------------------  105 (203)
                           +.+..+.. .+.|.+++++++  +..++.+.....+..|+                                   
T Consensus        96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (351)
T 3f3f_A           96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW  175 (351)
T ss_dssp             SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred             cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence                 34555544 467999999998  77777666555444443                                   


Q ss_pred             -CC---CCEEEEeeCCCeEEEEECCCCce--EEEEecc-ceEEEEEecCCc----EEEEeecC--e--------------
Q psy8891         106 -GA---GTTIISGHFDKKVRFWDFRAEEK--VRDIELH-GKITSLDLSKGK----YYFVFAEG--F--------------  158 (203)
Q Consensus       106 -~~---~~~l~s~s~d~~i~iWd~~~~~~--~~~~~~~-~~v~~~~~~~~~----~~~~~~~~--~--------------  158 (203)
                       |+   +..+++++.|+.+.+|+...++.  +..+..+ ..|.++.++++.    .+++....  .              
T Consensus       176 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  255 (351)
T 3f3f_A          176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLA  255 (351)
T ss_dssp             CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----
T ss_pred             ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccc
Confidence             33   77888888888888887776664  3333333 458888888875    44433211  0              


Q ss_pred             -----------------------------------------e-------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         159 -----------------------------------------K-------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       159 -----------------------------------------~-------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                                                               .       +...+..+.++|++++|++|+.|+.|++||+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          256 SEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             -----------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             cCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence                                                     0       0113556778999999999999999999999


Q ss_pred             CCceeeeee
Q psy8891         191 NTEQVEAVL  199 (203)
Q Consensus       191 ~~~~~~~~~  199 (203)
                      ++++..+.+
T Consensus       336 ~~~~~~~~~  344 (351)
T 3f3f_A          336 TYSNEFKCM  344 (351)
T ss_dssp             CTTSCEEEE
T ss_pred             CcCcchhhe
Confidence            987655554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=2.2e-23  Score=185.26  Aligned_cols=201  Identities=16%  Similarity=0.242  Sum_probs=153.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      +++|+|++++|++|+.|++|++||+.+++....   +......+.++|++++|++|+.|++|+|||+.+++.+..+..| 
T Consensus       620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~  699 (1249)
T 3sfz_A          620 HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS  699 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence            689999999999999999999999998765322   2233455789999999999999999999999999988888765 


Q ss_pred             CeEEEEEecCCCc--eEEEecCCc-----------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          78 GKITSLDLSKGTE--TKFAGSSCN-----------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        78 ~~v~~~~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      +.|.+++++++..  .++.++..+                       ..+.|+|+++.+++++.|++|++||+++++...
T Consensus       700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~  779 (1249)
T 3sfz_A          700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK  779 (1249)
T ss_dssp             SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred             CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccc
Confidence            5799999998533  344443322                       235788999999999999999999999887776


Q ss_pred             EEeccc--------------eEEEEEecCCcEEEEeecCee------------------EEeeeEEEEEEcCCCEEEEec
Q psy8891         133 DIELHG--------------KITSLDLSKGKYYFVFAEGFK------------------VQCDFTRAVFVVDDDYVAVGS  180 (203)
Q Consensus       133 ~~~~~~--------------~v~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~s~s  180 (203)
                      .+....              .+.++.++++...++......                  ....+..+.++|++.++++++
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  859 (1249)
T 3sfz_A          780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL  859 (1249)
T ss_dssp             EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred             eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence            654321              344455555543333221110                  012345678999999999999


Q ss_pred             CCCcEEEEeCCCceeeeeeccC
Q psy8891         181 IDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       181 ~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      .|+.|++||+.+++.+..+++|
T Consensus       860 ~dg~v~vwd~~~~~~~~~~~~h  881 (1249)
T 3sfz_A          860 SQYCVELWNIDSRLKVADCRGH  881 (1249)
T ss_dssp             SSSCEEEEETTTTEEEEEECCC
T ss_pred             CCCeEEEEEcCCCceeeecCCC
Confidence            9999999999999999988765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=1.9e-23  Score=161.20  Aligned_cols=199  Identities=12%  Similarity=0.134  Sum_probs=146.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC----eE--EecCcCceEEEEeCCCC-EEEEecCCCeEEEEEC-CCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE----TK--FAGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDF-RAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~----~~--~~~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~-~~~~~~~~   73 (203)
                      +++|+|++..|++|+.|++|++||+....    ..  ..+......+.+.|+++ .|++|+.|+.|++||+ ..++....
T Consensus        16 ~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~   95 (342)
T 1yfq_A           16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL   95 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEec
Confidence            68999999999999999999999998755    22  22233345577889999 9999999999999999 77765333


Q ss_pred             ee--eCCeEEEEEecCCCceEEEecCCceE-------------------------------EEEcCCCCEEEEeeCCCeE
Q psy8891          74 IE--LHGKITSLDLSKGTETKFAGSSCNDL-------------------------------VTYDGAGTTIISGHFDKKV  120 (203)
Q Consensus        74 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~l~s~s~d~~i  120 (203)
                      ..  ....|.++++++ +..++.+.....+                               +.|++++  +++++.|+.|
T Consensus        96 ~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i  172 (342)
T 1yfq_A           96 TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQV  172 (342)
T ss_dssp             BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEE
T ss_pred             cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeE
Confidence            23  446799999998 7766665544333                               3444544  8999999999


Q ss_pred             EEEECCC-CceE-E--EEeccceEEEEEecC-CcEEEEeec------------C------e---eEEe------------
Q psy8891         121 RFWDFRA-EEKV-R--DIELHGKITSLDLSK-GKYYFVFAE------------G------F---KVQC------------  162 (203)
Q Consensus       121 ~iWd~~~-~~~~-~--~~~~~~~v~~~~~~~-~~~~~~~~~------------~------~---~~~~------------  162 (203)
                      ++||+++ +... .  .......+.++.+++ +...++...            .      .   ....            
T Consensus       173 ~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (342)
T 1yfq_A          173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY  252 (342)
T ss_dssp             EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred             EEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence            9999987 5432 2  222335688888877 543333211            0      0   0111            


Q ss_pred             eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                      .+..+.++|++++|++|+.|+.|++||+++++++.++++||
T Consensus       253 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h  293 (342)
T 1yfq_A          253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN  293 (342)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             eEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc
Confidence            45677899999999999999999999999999999998874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=1.1e-22  Score=168.07  Aligned_cols=200  Identities=13%  Similarity=0.125  Sum_probs=155.7

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCC----CeE--Ee-cCcC-ceEEEEeC--CCCEEEEecCCCeEEEEECCCc--
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRST----ETK--FA-GSSC-NDLVTYDG--AGTTIISGHFDKKVRFWDFRAE--   68 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~----~~~--~~-~~~~-~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~--   68 (203)
                      .+++|+|++++|++++ |+.|++||+.++    +..  +. +... ...+.++|  ++++|++|+.|++|++||+.++  
T Consensus        22 ~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~  100 (615)
T 1pgu_A           22 THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKE  100 (615)
T ss_dssp             CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGG
T ss_pred             eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcc
Confidence            3689999999999998 899999999876    432  22 2233 45678999  9999999999999999999744  


Q ss_pred             ------eEEEeeee-CCeEEEEEecCCCceEEEecCC-------------------------ceEEEEcCCCC-EEEEee
Q psy8891          69 ------EKVRDIEL-HGKITSLDLSKGTETKFAGSSC-------------------------NDLVTYDGAGT-TIISGH  115 (203)
Q Consensus        69 ------~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~-~l~s~s  115 (203)
                            +....+.. ...|.+++++|++..++.+...                         ...+.|+|++. .+++++
T Consensus       101 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  180 (615)
T 1pgu_A          101 SNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG  180 (615)
T ss_dssp             GTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred             cccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEe
Confidence                  45555553 4679999999999887766533                         23467899987 899999


Q ss_pred             CCCeEEEEECCCCceEEEEeccc----eEEEEEecCC-cEEEEeec--Ce--------------------eEEeeeEEEE
Q psy8891         116 FDKKVRFWDFRAEEKVRDIELHG----KITSLDLSKG-KYYFVFAE--GF--------------------KVQCDFTRAV  168 (203)
Q Consensus       116 ~d~~i~iWd~~~~~~~~~~~~~~----~v~~~~~~~~-~~~~~~~~--~~--------------------~~~~~~~~~~  168 (203)
                      .|++|++||+.+++.+..+..+.    .+.++.++++ ...++...  +.                    .....+..+.
T Consensus       181 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~  260 (615)
T 1pgu_A          181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS  260 (615)
T ss_dssp             TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE
T ss_pred             CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEE
Confidence            99999999999999888887664    5999999887 55444321  10                    1112345667


Q ss_pred             EEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         169 FVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       169 ~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      ++ ++++|++++.|+.|++||+++++++..++.+
T Consensus       261 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            77 9999999999999999999999999887654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.3e-23  Score=162.51  Aligned_cols=192  Identities=15%  Similarity=0.222  Sum_probs=141.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-Ee-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK   79 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~   79 (203)
                      +++|+|++++|++|+.|++|++||....... .. +......+.+.|+++.|++++.|+.|++||+++++.+..+..+..
T Consensus       113 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  192 (425)
T 1r5m_A          113 CLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET  192 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence            6889999999999999999999995433222 22 223345578899999999999999999999999888776654432


Q ss_pred             ----------------EEEEEecCCCceEEEec-----------------------CCceEEEEcCCCCEEEEeeCCCeE
Q psy8891          80 ----------------ITSLDLSKGTETKFAGS-----------------------SCNDLVTYDGAGTTIISGHFDKKV  120 (203)
Q Consensus        80 ----------------v~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~s~s~d~~i  120 (203)
                                      +.++.+.++.. ++.+.                       .....+.|+|+++.|++++.|+.|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTL  271 (425)
T ss_dssp             -------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             CccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEE
Confidence                            55566665533 22221                       112346789999999999999999


Q ss_pred             EEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeecCee-----------E------EeeeEEEEEEcCCCEEEEecCC
Q psy8891         121 RFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFK-----------V------QCDFTRAVFVVDDDYVAVGSID  182 (203)
Q Consensus       121 ~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~-----------~------~~~~~~~~~~~~~~~l~s~s~d  182 (203)
                      ++||+++++....+..+ ..+..+.++++..++.......           .      ...+..+.++|++++|++++.|
T Consensus       272 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  351 (425)
T 1r5m_A          272 RIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD  351 (425)
T ss_dssp             EEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence            99999998888877644 5688888887763332221110           0      1235567889999999999999


Q ss_pred             CcEEEEeCCCce
Q psy8891         183 GNIYVWDCNTEQ  194 (203)
Q Consensus       183 ~~v~~wd~~~~~  194 (203)
                      +.|++||+.+++
T Consensus       352 g~i~i~~~~~~~  363 (425)
T 1r5m_A          352 GQVNVYDLKKLN  363 (425)
T ss_dssp             SCEEEEECHHHH
T ss_pred             CeEEEEECCCCc
Confidence            999999999888

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.3e-23  Score=172.14  Aligned_cols=174  Identities=15%  Similarity=0.163  Sum_probs=115.5

Q ss_pred             ceEEcCC------CCEEEEEeCCCcEEEEeCCCCCe-------------EEec-CcCceEEEEeCCCCEEEEecCCCeEE
Q psy8891           2 CAKFLGD------PTKVVSGSCDRTLKIWDLRSTET-------------KFAG-SSCNDLVTYDGAGTTIISGHFDKKVR   61 (203)
Q Consensus         2 ~~~~~~~------~~~l~t~s~D~~v~lwdl~~~~~-------------~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~   61 (203)
                      +++|+|+      +..|+|||.|++||+||+.....             .+.+ ......+.|+++ ..|++|+.||+|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            5788886      57999999999999999976431             1111 122344667664 5899999999999


Q ss_pred             EEECCCce-EEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEEeccc
Q psy8891          62 FWDFRAEE-KVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDIELHG  138 (203)
Q Consensus        62 vwd~~~~~-~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~  138 (203)
                      +||+++++ +...+..| +.|.++++                 .|+++| ++|+|++.|++|++||++++++...+..+.
T Consensus       291 lWD~~~~~~~~~~~~~H~~~V~sv~~-----------------~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~  353 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQVHDSYILSVST-----------------AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF  353 (524)
T ss_dssp             EEETTBCSSCSEEEECSSSCEEEEEE-----------------ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred             EEECCCCCCceEEeecccccEEEEEE-----------------EcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence            99998764 33445444 55776631                 234454 577788888888888877666554443332


Q ss_pred             ---eEEEEEecCCcEEEEeecC------------e------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         139 ---KITSLDLSKGKYYFVFAEG------------F------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       139 ---~v~~~~~~~~~~~~~~~~~------------~------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                         .+.++.++++...++....            .      .+...+..+.|+|++++|++|+.|++|++||+..+
T Consensus       354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence               2556666664333332111            0      01124566778899999999999999999998643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=9.9e-23  Score=161.30  Aligned_cols=180  Identities=18%  Similarity=0.257  Sum_probs=133.8

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCC-------Ce--EEe-cCcCceEEEEeCCC-CEEEEecCCCeEEEEECCCce
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRST-------ET--KFA-GSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~-------~~--~~~-~~~~~~~~~~~~~~-~~l~s~~~D~~i~vwd~~~~~   69 (203)
                      +++|+| ++..|++|+.|++|++||+.+.       +.  .+. +......+.|.|++ +.|++++.|++|++||+++++
T Consensus        86 ~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  165 (402)
T 2aq5_A           86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA  165 (402)
T ss_dssp             EEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC
Confidence            689999 9999999999999999999875       21  222 23334557888987 699999999999999999998


Q ss_pred             EEEee--ee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-eccc--eEEEE
Q psy8891          70 KVRDI--EL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-ELHG--KITSL  143 (203)
Q Consensus        70 ~~~~~--~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~-~~~~--~v~~~  143 (203)
                      .+..+  .. .+.|.++++                   +|++..|++++.|++|++||+++++.+..+ ..+.  .+..+
T Consensus       166 ~~~~~~~~~~~~~v~~~~~-------------------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  226 (402)
T 2aq5_A          166 AVLTLGPDVHPDTIYSVDW-------------------SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHA  226 (402)
T ss_dssp             EEEEECTTTCCSCEEEEEE-------------------CTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEE
T ss_pred             ccEEEecCCCCCceEEEEE-------------------CCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEE
Confidence            87776  33 345666554                   456678999999999999999999888877 4443  26677


Q ss_pred             EecCCcEEEEee----cCee-------------------EEeeeEEEEEEcCCCEEE-EecCCCcEEEEeCCCcee-eee
Q psy8891         144 DLSKGKYYFVFA----EGFK-------------------VQCDFTRAVFVVDDDYVA-VGSIDGNIYVWDCNTEQV-EAV  198 (203)
Q Consensus       144 ~~~~~~~~~~~~----~~~~-------------------~~~~~~~~~~~~~~~~l~-s~s~d~~v~~wd~~~~~~-~~~  198 (203)
                      .++++..+++..    ....                   ....+..+.++|++++|+ +|+.|+.|++||+.+++. +..
T Consensus       227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~  306 (402)
T 2aq5_A          227 VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY  306 (402)
T ss_dssp             EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred             EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence            777766555543    1110                   011245677899999886 566899999999998874 444


Q ss_pred             ec
Q psy8891         199 LK  200 (203)
Q Consensus       199 ~~  200 (203)
                      +.
T Consensus       307 l~  308 (402)
T 2aq5_A          307 LS  308 (402)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.3e-24  Score=172.16  Aligned_cols=200  Identities=10%  Similarity=0.098  Sum_probs=132.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCC---CCCeEE--ecC-----------cCceE--EE--EeCCCCEEEEecCCCeEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLR---STETKF--AGS-----------SCNDL--VT--YDGAGTTIISGHFDKKVR   61 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~---~~~~~~--~~~-----------~~~~~--~~--~~~~~~~l~s~~~D~~i~   61 (203)
                      +++|+|++..|++|+.|++|++||+.   .++...  ...           ....+  +.  +.++++.|++|+.|++|+
T Consensus       116 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  195 (437)
T 3gre_A          116 QITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVI  195 (437)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred             EEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEE
Confidence            68999999999999999999999995   332211  000           11111  11  446788999999999999


Q ss_pred             EEECCCceEEEeeee---CCeEEEEEecCCCceEEEecCCceE------------------------EEE----cCCCCE
Q psy8891          62 FWDFRAEEKVRDIEL---HGKITSLDLSKGTETKFAGSSCNDL------------------------VTY----DGAGTT  110 (203)
Q Consensus        62 vwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~------------------------~~~----~~~~~~  110 (203)
                      +||+++++.+..+..   .+.|.+++++|++..++.+...+.+                        +.|    ++++.+
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~  275 (437)
T 3gre_A          196 IFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI  275 (437)
T ss_dssp             EEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE
T ss_pred             EEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE
Confidence            999999998888875   3679999888877766655443322                        212    234557


Q ss_pred             EEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEe--ecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEE
Q psy8891         111 IISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVF--AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYV  187 (203)
Q Consensus       111 l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~  187 (203)
                      |++++.|++|++||+++++++..+..+. .+..+.+++....+..  ..+......+..+.++ ++++|++|+.|+.|++
T Consensus       276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~  354 (437)
T 3gre_A          276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM  354 (437)
T ss_dssp             EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred             EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence            7777777777777777777666655332 1211112211100000  0000011234556777 7789999999999999


Q ss_pred             EeCCCceeeeeeccC
Q psy8891         188 WDCNTEQVEAVLKDM  202 (203)
Q Consensus       188 wd~~~~~~~~~~~~~  202 (203)
                      ||+.++++.+++.+|
T Consensus       355 wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          355 FSLNELSSSKAVISP  369 (437)
T ss_dssp             EETTCGGGCEEEECC
T ss_pred             EECCCcccceEEecc
Confidence            999999999988764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=9.7e-23  Score=160.35  Aligned_cols=183  Identities=15%  Similarity=0.208  Sum_probs=141.9

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeE--Ee--------------cCcCceEEEEeC-CCCEEEEecCCCeEEEE
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETK--FA--------------GSSCNDLVTYDG-AGTTIISGHFDKKVRFW   63 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~--~~--------------~~~~~~~~~~~~-~~~~l~s~~~D~~i~vw   63 (203)
                      +++|+| ++..|++|+.||+|++||+.+.+..  ..              +......+.|.| +++.|++++.|+.|++|
T Consensus        48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  127 (408)
T 4a11_B           48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW  127 (408)
T ss_dssp             EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEE
T ss_pred             EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEe
Confidence            789999 9999999999999999999874321  11              222344567888 67799999999999999


Q ss_pred             ECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEE
Q psy8891          64 DFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITS  142 (203)
Q Consensus        64 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~  142 (203)
                      |+++++....+.....+..+.+.+..                +++..+++++.|+.|++||+++++.+..+..+ ..+.+
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          128 DTNTLQTADVFNFEETVYSHHMSPVS----------------TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA  191 (408)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSSC----------------SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred             eCCCCccceeccCCCceeeeEeecCC----------------CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence            99999988888777778887776632                35568999999999999999999888887754 56888


Q ss_pred             EEecCCcE-EEEeec--Ce--------------------------------eEEeeeEEEEEEcCCCEEEEecCCCcEEE
Q psy8891         143 LDLSKGKY-YFVFAE--GF--------------------------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYV  187 (203)
Q Consensus       143 ~~~~~~~~-~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~  187 (203)
                      +.++++.. +++...  +.                                .....+..+.++|++++|++++.|+.|++
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            88887643 333221  11                                01123567789999999999999999999


Q ss_pred             EeCCCceeeeeec
Q psy8891         188 WDCNTEQVEAVLK  200 (203)
Q Consensus       188 wd~~~~~~~~~~~  200 (203)
                      ||+++++....+.
T Consensus       272 wd~~~~~~~~~~~  284 (408)
T 4a11_B          272 WNSSNGENTLVNY  284 (408)
T ss_dssp             EETTTCCBCCCCC
T ss_pred             EECCCCccceecc
Confidence            9999888765543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.92  E-value=1e-22  Score=159.23  Aligned_cols=169  Identities=14%  Similarity=0.148  Sum_probs=124.9

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      .|++|+||+++|++|+.|+ +++||+...+.... .......+.+.++++.+ ++++.|++|++||+++++.+..+..+.
T Consensus        23 ~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~  101 (355)
T 3vu4_A           23 TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA  101 (355)
T ss_dssp             CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCC
Confidence            4799999999999998765 78999886543322 11224456677777766 678889999999999999888887777


Q ss_pred             eEEEEEecCCCce-----------------------------------EEE--ec-------------------------
Q psy8891          79 KITSLDLSKGTET-----------------------------------KFA--GS-------------------------   96 (203)
Q Consensus        79 ~v~~~~~~~~~~~-----------------------------------~~~--~~-------------------------   96 (203)
                      .|.++.++++...                                   ++.  +.                         
T Consensus       102 ~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~  181 (355)
T 3vu4_A          102 PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ  181 (355)
T ss_dssp             CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-------------
T ss_pred             ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccc
Confidence            7777766543210                                   000  00                         


Q ss_pred             --------------CCceEEEEcCCCCEEEEeeCCCe-EEEEECCCCceEEEEec--c-ceEEEEEecCCcEEEEeecCe
Q psy8891          97 --------------SCNDLVTYDGAGTTIISGHFDKK-VRFWDFRAEEKVRDIEL--H-GKITSLDLSKGKYYFVFAEGF  158 (203)
Q Consensus        97 --------------~~~~~~~~~~~~~~l~s~s~d~~-i~iWd~~~~~~~~~~~~--~-~~v~~~~~~~~~~~~~~~~~~  158 (203)
                                    .....+.|+|+|++|++++.|++ |++||+++++++..+..  + ..                   
T Consensus       182 ~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~-------------------  242 (355)
T 3vu4_A          182 KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD-------------------  242 (355)
T ss_dssp             -----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC-------------------
T ss_pred             cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc-------------------
Confidence                          11124678999999999999998 99999999988877762  2 22                   


Q ss_pred             eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         159 KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                           +..+.|+|++++|++|+.|++|++||++.+.
T Consensus       243 -----v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          243 -----VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             -----EEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             -----EEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence                 3455677899999999999999999997654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=6.4e-24  Score=168.14  Aligned_cols=193  Identities=12%  Similarity=0.071  Sum_probs=119.6

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCeEE-------e-cCcCceEEEEeC--------CCCEEEEecCCCeEEEEECCCc
Q psy8891           5 FLGDPTKVVSGSCDRTLKIWDLRSTETKF-------A-GSSCNDLVTYDG--------AGTTIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         5 ~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-------~-~~~~~~~~~~~~--------~~~~l~s~~~D~~i~vwd~~~~   68 (203)
                      +.+++..|++|+.|++|||||++.++...       . +......+.|.|        ++++|+|||.|++|||||++++
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            45567789999999999999998764321       1 112234566765        6789999999999999999887


Q ss_pred             eEE-EeeeeCCeEEEEEecCCCc-eEEEecCCceEEE-------------------------------------------
Q psy8891          69 EKV-RDIELHGKITSLDLSKGTE-TKFAGSSCNDLVT-------------------------------------------  103 (203)
Q Consensus        69 ~~~-~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~-------------------------------------------  103 (203)
                      .++ ..+..+..+.+++|+|++. .++.+.....+..                                           
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  256 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS  256 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence            655 4445678899999999765 3554444333222                                           


Q ss_pred             ------EcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEc--CCC
Q psy8891         104 ------YDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVV--DDD  174 (203)
Q Consensus       104 ------~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  174 (203)
                            +.+++..|++++.|+++++||+..++....+..+ ..+..+.+.++........      ......+.+  ++.
T Consensus       257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  330 (393)
T 4gq1_A          257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP------SLLGACPHPRYMDY  330 (393)
T ss_dssp             CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC------CSSCCEECSSCTTE
T ss_pred             ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC------cceeEEEccCCCCE
Confidence                  2467888999999999999998876655444322 1222222222221111000      011223333  344


Q ss_pred             EEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         175 YVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       175 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                      ++++|+.|++|++||+.+++++..+.+|+
T Consensus       331 ~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~  359 (393)
T 4gq1_A          331 FATAHSQHGLIQLINTYEKDSNSIPIQLG  359 (393)
T ss_dssp             EEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence            67889999999999999999888776553

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.4e-24  Score=184.89  Aligned_cols=183  Identities=13%  Similarity=0.139  Sum_probs=117.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----E----------ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----F----------AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~----------~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      +++|+|+++.|+|||.|++||+||+.++...    +          .+......++++|++++|++|+.|++|+|||+.+
T Consensus       440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~  519 (902)
T 2oaj_A          440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV  519 (902)
T ss_dssp             CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred             cccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecC
Confidence            4688999999999999999999999865321    1          1112345678999999999999999999999976


Q ss_pred             ceEEEe----------eee--------CCeEEEEEecCCC--------ceEEE-ecCCceEEEEcCCCCEEEEeeCCCeE
Q psy8891          68 EEKVRD----------IEL--------HGKITSLDLSKGT--------ETKFA-GSSCNDLVTYDGAGTTIISGHFDKKV  120 (203)
Q Consensus        68 ~~~~~~----------~~~--------~~~v~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~l~s~s~d~~i  120 (203)
                      ++....          +..        ......+....+.        ...+. .......+.|+|+| +|++|+.|++|
T Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv  598 (902)
T 2oaj_A          520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL  598 (902)
T ss_dssp             CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred             ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE
Confidence            532100          000        0000000000000        00011 12223446688999 99999999999


Q ss_pred             EEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEE-----cCC---CEEEEecCCCcEEEEeC--
Q psy8891         121 RFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV-----VDD---DYVAVGSIDGNIYVWDC--  190 (203)
Q Consensus       121 ~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~l~s~s~d~~v~~wd~--  190 (203)
                      ++||++++..+........      .           ..+...++.+.|+     ||+   .+|++|+.|++|++||+  
T Consensus       599 ~lwd~~~~~~~~~~~~~~~------~-----------~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p  661 (902)
T 2oaj_A          599 MLIDRRGPAIIYMENIREI------S-----------GAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILP  661 (902)
T ss_dssp             EEEETTTTEEEEEEEGGGT------C-----------SSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred             EEEECCCCeEEEEeehhHh------c-----------cccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEec
Confidence            9999987665433221100      0           0011123445566     674   79999999999999999  


Q ss_pred             -CCceeeeeeccC
Q psy8891         191 -NTEQVEAVLKDM  202 (203)
Q Consensus       191 -~~~~~~~~~~~~  202 (203)
                       .+|+...++.+|
T Consensus       662 ~~~g~~~~~~~~~  674 (902)
T 2oaj_A          662 ASGGKFDVQLMDI  674 (902)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCCcEEEEecCc
Confidence             889988888664

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=3.2e-22  Score=157.38  Aligned_cols=196  Identities=18%  Similarity=0.213  Sum_probs=150.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC------eE--Ee-cCcCceEEEEeCC----C---CEEEEecCCCeEEEEEC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE------TK--FA-GSSCNDLVTYDGA----G---TTIISGHFDKKVRFWDF   65 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~------~~--~~-~~~~~~~~~~~~~----~---~~l~s~~~D~~i~vwd~   65 (203)
                      +++|+|  ..|++|+.|++|++||+.+.+      ..  .. +......+.|.++    +   ++|++++.|+.|++||+
T Consensus        21 ~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~   98 (397)
T 1sq9_A           21 SVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI   98 (397)
T ss_dssp             EEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEE
T ss_pred             EEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEc
Confidence            688888  899999999999999998765      21  22 2223445678888    8   89999999999999999


Q ss_pred             CCceE-----EEeeeeC------CeEEEEEec----CCCce-EEEecCC-------------------------------
Q psy8891          66 RAEEK-----VRDIELH------GKITSLDLS----KGTET-KFAGSSC-------------------------------   98 (203)
Q Consensus        66 ~~~~~-----~~~~~~~------~~v~~~~~~----~~~~~-~~~~~~~-------------------------------   98 (203)
                      ..++.     ...+..+      ..|.+++++    +++.. ++.+...                               
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  178 (397)
T 1sq9_A           99 TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT  178 (397)
T ss_dssp             EECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred             cCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence            88775     6666666      789999999    88877 6543221                               


Q ss_pred             ----------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-------cceEEEEEecCCcEEEEee--c---
Q psy8891          99 ----------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-------HGKITSLDLSKGKYYFVFA--E---  156 (203)
Q Consensus        99 ----------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~--~---  156 (203)
                                ...+.|+|++ .+++++.|+.|++||+++++++..+..       ...+.++.++++..+++..  .   
T Consensus       179 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~  257 (397)
T 1sq9_A          179 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF  257 (397)
T ss_dssp             ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE
T ss_pred             eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCC
Confidence                      1135678889 999999999999999999999888887       5678999888764444322  1   


Q ss_pred             Cee-----------------------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         157 GFK-----------------------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       157 ~~~-----------------------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +..                             ....+..+.++|++++|++++.|+.|++||+++++++.+++
T Consensus       258 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            110                             11234567889999999999999999999999999999988

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.91  E-value=1.3e-22  Score=157.13  Aligned_cols=192  Identities=15%  Similarity=0.300  Sum_probs=138.9

Q ss_pred             ceEEcCCCCEE-EEEeC---CCcEEEEeCCCCCeE----EecCcCceEEEEeCC---CCEEEEecCCCeEEEEECCCce-
Q psy8891           2 CAKFLGDPTKV-VSGSC---DRTLKIWDLRSTETK----FAGSSCNDLVTYDGA---GTTIISGHFDKKVRFWDFRAEE-   69 (203)
Q Consensus         2 ~~~~~~~~~~l-~t~s~---D~~v~lwdl~~~~~~----~~~~~~~~~~~~~~~---~~~l~s~~~D~~i~vwd~~~~~-   69 (203)
                      +++|+|++..+ ++|+.   |++|++||+.+.+..    ..+......+.|.|+   +++|++|+.|+.|++||+..++ 
T Consensus        23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  102 (357)
T 3i2n_A           23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM  102 (357)
T ss_dssp             EEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS
T ss_pred             EEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc
Confidence            68999999655 56666   999999999886642    122233455678887   6899999999999999999887 


Q ss_pred             EEEeeeeC-CeEEEEEe------cCCCceEEEecCCceE----------------------------EE----EcCCCCE
Q psy8891          70 KVRDIELH-GKITSLDL------SKGTETKFAGSSCNDL----------------------------VT----YDGAGTT  110 (203)
Q Consensus        70 ~~~~~~~~-~~v~~~~~------~~~~~~~~~~~~~~~~----------------------------~~----~~~~~~~  110 (203)
                      .+..+..| +.|.++++      ++++..++.+.....+                            +.    |++++.+
T Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  182 (357)
T 3i2n_A          103 PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV  182 (357)
T ss_dssp             CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE
T ss_pred             cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE
Confidence            66666654 56888854      5666666655433221                            12    5688999


Q ss_pred             EEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecC---CcEEEEeec--Ce---------------------eEEeee
Q psy8891         111 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK---GKYYFVFAE--GF---------------------KVQCDF  164 (203)
Q Consensus       111 l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~--~~---------------------~~~~~~  164 (203)
                      +++++.|+.|++||+++++..........+.++.+++   +...++...  +.                     .....+
T Consensus       183 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v  262 (357)
T 3i2n_A          183 VCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTV  262 (357)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCE
T ss_pred             EEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCE
Confidence            9999999999999999988876666677899999986   433333221  10                     011234


Q ss_pred             EEEEEEcCCC-EEEEecCCCcEEEEeCCCc
Q psy8891         165 TRAVFVVDDD-YVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       165 ~~~~~~~~~~-~l~s~s~d~~v~~wd~~~~  193 (203)
                      ..+.++|++. +|++|+.|+.|++||++++
T Consensus       263 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          263 WQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             EEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            5677899988 8999999999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=2.5e-23  Score=166.64  Aligned_cols=189  Identities=12%  Similarity=0.147  Sum_probs=129.4

Q ss_pred             CceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeEE--ecCc---CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           1 MCAKFLG-DPTKVVSGSCDRTLKIWDLRSTETKF--AGSS---CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         1 ~~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~---~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      .+++|+| ++.+|+|||.|++|++||+++.....  ....   ....+.+++++++|++|+.||+|++||++.. .+..+
T Consensus       168 ~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~  246 (435)
T 4e54_B          168 TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL  246 (435)
T ss_dssp             CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE
Confidence            3789998 68899999999999999998754321  1111   1234678899999999999999999999754 44455


Q ss_pred             eeC-CeEEEEEecCCCceEE-EecCCce--------------------------EEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          75 ELH-GKITSLDLSKGTETKF-AGSSCND--------------------------LVTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        75 ~~~-~~v~~~~~~~~~~~~~-~~~~~~~--------------------------~~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                      ..| ..|.+++++|++..++ .++....                          .+.|+|+|.+|++++.|++|++||++
T Consensus       247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            544 6799999999876543 3332221                          24688999999999999999999999


Q ss_pred             CCceEEEEeccceE-------EEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEe-cCCCcEEEEeCCCceeeee
Q psy8891         127 AEEKVRDIELHGKI-------TSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVG-SIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       127 ~~~~~~~~~~~~~v-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~~v~~wd~~~~~~~~~  198 (203)
                      +++....+..+..-       ....+++..             ....+.+.+++..++.+ ..++.|++||.++++++.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~  393 (435)
T 4e54_B          327 QWDCPLGLIPHPHRHFQHLTPIKAAWHPRY-------------NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ  393 (435)
T ss_dssp             SSSSEEEECCCCCCCCSSSCCCBCEECSSS-------------SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred             CCccceEEecccccccccceeEEEEEcCCC-------------CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence            98876665433210       000111110             11122233444443333 3456899999999999998


Q ss_pred             eccCC
Q psy8891         199 LKDMH  203 (203)
Q Consensus       199 ~~~~~  203 (203)
                      +.++|
T Consensus       394 l~~~~  398 (435)
T 4e54_B          394 LYDPE  398 (435)
T ss_dssp             ECCSS
T ss_pred             EeCCC
Confidence            87554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=2e-22  Score=158.27  Aligned_cols=189  Identities=14%  Similarity=0.170  Sum_probs=132.8

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeE-Eec-C---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETK-FAG-S---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~-~~~-~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      +++|+| ++..|++++.|++|++||+.+.... ... .   .....+.++|+++.|++|+.|+.|++||++ ++.+..+.
T Consensus       123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~  201 (383)
T 3ei3_B          123 GMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK  201 (383)
T ss_dssp             EEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE
T ss_pred             EEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec
Confidence            688999 7799999999999999999864332 111 1   223457889999999999999999999994 55666666


Q ss_pred             eC-CeEEEEEecCCCc-eEEEecCCce--------------------------EEEEcC-CCCEEEEeeCCCeEEEEECC
Q psy8891          76 LH-GKITSLDLSKGTE-TKFAGSSCND--------------------------LVTYDG-AGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        76 ~~-~~v~~~~~~~~~~-~~~~~~~~~~--------------------------~~~~~~-~~~~l~s~s~d~~i~iWd~~  126 (203)
                      .| +.|.+++++|++. .++.++....                          .+.|+| ++.+|++++.|++|++||++
T Consensus       202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred             cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence            54 6799999999887 5655443321                          257889 99999999999999999999


Q ss_pred             CCceEEEEecc------------------ceEEEEEecC--------CcEEEEee--cCee--------EEeeeEEEEEE
Q psy8891         127 AEEKVRDIELH------------------GKITSLDLSK--------GKYYFVFA--EGFK--------VQCDFTRAVFV  170 (203)
Q Consensus       127 ~~~~~~~~~~~------------------~~v~~~~~~~--------~~~~~~~~--~~~~--------~~~~~~~~~~~  170 (203)
                      +++....+..+                  ..+..+.+++        +..+.+..  .+..        ....+..+.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s  361 (383)
T 3ei3_B          282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFS  361 (383)
T ss_dssp             BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEEC
T ss_pred             CCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEe
Confidence            87765555422                  1222233321        11111111  1111        01123345899


Q ss_pred             cCCCEEEEecCCCcEEEEeCCC
Q psy8891         171 VDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       171 ~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      |++++|++|+ |+.|++||+++
T Consensus       362 ~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          362 PTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TTSSEEEEEE-TTEEEEEECC-
T ss_pred             cCccEEEEec-CCcEEEEecCC
Confidence            9999999997 99999999874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.91  E-value=1.9e-21  Score=152.88  Aligned_cols=201  Identities=14%  Similarity=0.140  Sum_probs=152.4

Q ss_pred             ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +++|+|+++.+ ++++.|++|++||+.+++..  .........++++|+++.| ++++.|+.|++||+.+++.+..+..+
T Consensus        36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~  115 (391)
T 1l0q_A           36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG  115 (391)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC
Confidence            68999999976 67889999999999886643  2223334557889999977 56667899999999999988888888


Q ss_pred             CeEEEEEecCCCceEE-EecCCce----------------------EEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEE
Q psy8891          78 GKITSLDLSKGTETKF-AGSSCND----------------------LVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRD  133 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~-~~~~~~~----------------------~~~~~~~~~~l-~s~s~d~~i~iWd~~~~~~~~~  133 (203)
                      ..+..+++++++..++ .+...+.                      .+.|+|+++.| ++++.|++|++||+++++....
T Consensus       116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  195 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            8899999999988764 4332222                      24688899877 6778899999999999988888


Q ss_pred             EeccceEEEEEecCCcE-EEEeec----Ce---------eE------EeeeEEEEEEcCCCEE-EEecCCCcEEEEeCCC
Q psy8891         134 IELHGKITSLDLSKGKY-YFVFAE----GF---------KV------QCDFTRAVFVVDDDYV-AVGSIDGNIYVWDCNT  192 (203)
Q Consensus       134 ~~~~~~v~~~~~~~~~~-~~~~~~----~~---------~~------~~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~~  192 (203)
                      +.....+..+.++++.. ++....    +.         ..      ......+.++|++++| ++++.|+.|++||+.+
T Consensus       196 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            87777788888887643 333221    11         00      1123456788999877 6778999999999999


Q ss_pred             ceeeeeeccC
Q psy8891         193 EQVEAVLKDM  202 (203)
Q Consensus       193 ~~~~~~~~~~  202 (203)
                      ++++++++.+
T Consensus       276 ~~~~~~~~~~  285 (391)
T 1l0q_A          276 NTITATMAVG  285 (391)
T ss_dssp             TEEEEEEECS
T ss_pred             CcEEEEEECC
Confidence            9999888643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.91  E-value=1.2e-22  Score=158.24  Aligned_cols=193  Identities=15%  Similarity=0.226  Sum_probs=143.6

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--E---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE---EEe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--F---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~---~~~   73 (203)
                      +++|+|+++.|++++.|++|++||+.+.+..  .   ........+.+.|++++|++++.|+.|++||++.++.   ...
T Consensus        57 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  136 (372)
T 1k8k_C           57 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH  136 (372)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence            6889999999999999999999999876522  1   1222344577899999999999999999999987752   222


Q ss_pred             e-e-eCCeEEEEEecCCCceEEEecCCc-----------------------------------------eEEEEcCCCCE
Q psy8891          74 I-E-LHGKITSLDLSKGTETKFAGSSCN-----------------------------------------DLVTYDGAGTT  110 (203)
Q Consensus        74 ~-~-~~~~v~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~  110 (203)
                      + . ....|.++++++++..++.+...+                                         ..+.|+|++..
T Consensus       137 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  216 (372)
T 1k8k_C          137 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  216 (372)
T ss_dssp             ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             eecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCE
Confidence            2 2 246799999999887766544221                                         12567788999


Q ss_pred             EEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEeecCe-------------------------------
Q psy8891         111 IISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFAEGF-------------------------------  158 (203)
Q Consensus       111 l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~-------------------------------  158 (203)
                      |++++.|++|++||+++++++..+..+. .+.++.++++..+++.....                               
T Consensus       217 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (372)
T 1k8k_C          217 VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL  296 (372)
T ss_dssp             EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred             EEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence            9999999999999999999988887664 68888887665544332110                               


Q ss_pred             ---------------------------eEEeeeEEEEEE-cCC---CEEEEecCCCcEEEEeCCCce
Q psy8891         159 ---------------------------KVQCDFTRAVFV-VDD---DYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       159 ---------------------------~~~~~~~~~~~~-~~~---~~l~s~s~d~~v~~wd~~~~~  194 (203)
                                                 .+...+..+.+. +++   .+|+||+.||.|++||+++++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             chhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                                       011234556544 566   899999999999999987654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.4e-22  Score=160.08  Aligned_cols=182  Identities=12%  Similarity=0.244  Sum_probs=130.6

Q ss_pred             CceEEcCCCC-EEEEEeCCCcEEEEeC----CCCC------eE--Eec-----------CcCceEEEEeCCCCEEEEecC
Q psy8891           1 MCAKFLGDPT-KVVSGSCDRTLKIWDL----RSTE------TK--FAG-----------SSCNDLVTYDGAGTTIISGHF   56 (203)
Q Consensus         1 ~~~~~~~~~~-~l~t~s~D~~v~lwdl----~~~~------~~--~~~-----------~~~~~~~~~~~~~~~l~s~~~   56 (203)
                      .+++|+|++. +|++|+.|++|++||+    .+++      ..  ...           ......+.|+|++++|++++.
T Consensus        49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  128 (425)
T 1r5m_A           49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE  128 (425)
T ss_dssp             SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence            3789999999 9999999999999999    7655      11  111           113455788999999999999


Q ss_pred             CCeEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          57 DKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        57 D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                      |+.|++|| ..++.+..+..| ..|.++++                   +|+++.|++++.|+.|++||+++++.+..+.
T Consensus       129 dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~-------------------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          129 NGELRLWN-KTGALLNVLNFHRAPIVSVKW-------------------NKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             TSCEEEEE-TTSCEEEEECCCCSCEEEEEE-------------------CTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             CCeEEEEe-CCCCeeeeccCCCccEEEEEE-------------------CCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            99999999 555666555543 45666554                   5566789999999999999999988877766


Q ss_pred             ccce----------------EEEEEecCCcEEEEeecCe-----------------eEEeeeEEEEEEcCCCEEEEecCC
Q psy8891         136 LHGK----------------ITSLDLSKGKYYFVFAEGF-----------------KVQCDFTRAVFVVDDDYVAVGSID  182 (203)
Q Consensus       136 ~~~~----------------v~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~s~s~d  182 (203)
                      .+..                +..+.+.++..++......                 .....+..+.++|++++|++++.|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  268 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDD  268 (425)
T ss_dssp             CC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCC
Confidence            5432                4444444443333221110                 012245677899999999999999


Q ss_pred             CcEEEEeCCCceeeeeeccC
Q psy8891         183 GNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       183 ~~v~~wd~~~~~~~~~~~~~  202 (203)
                      +.|++||+++++++..+++|
T Consensus       269 ~~i~i~d~~~~~~~~~~~~~  288 (425)
T 1r5m_A          269 GTLRIWHGGNGNSQNCFYGH  288 (425)
T ss_dssp             SCEEEECSSSBSCSEEECCC
T ss_pred             CEEEEEECCCCccceEecCC
Confidence            99999999999998888654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9.5e-23  Score=161.20  Aligned_cols=175  Identities=15%  Similarity=0.238  Sum_probs=121.3

Q ss_pred             CceEEcCC-CCEEEEEeCCCcEEEEeCCCCC------eEE------ecCcCceEEEEeCC-CCEEEEecCCCeEEEEECC
Q psy8891           1 MCAKFLGD-PTKVVSGSCDRTLKIWDLRSTE------TKF------AGSSCNDLVTYDGA-GTTIISGHFDKKVRFWDFR   66 (203)
Q Consensus         1 ~~~~~~~~-~~~l~t~s~D~~v~lwdl~~~~------~~~------~~~~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~   66 (203)
                      .+++|+|+ +..|++|+.|++|++||+.+.+      ...      .+......+.+.|+ +..|++++.|+.|++||++
T Consensus       117 ~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~  196 (416)
T 2pm9_A          117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK  196 (416)
T ss_dssp             CEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT
T ss_pred             EEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC
Confidence            36899998 8999999999999999998754      211      12223345778888 7899999999999999999


Q ss_pred             CceEEEeeee-------CCeEEEEEecCCCc-eEEEecCCc----------------------------eEEEEcC-CCC
Q psy8891          67 AEEKVRDIEL-------HGKITSLDLSKGTE-TKFAGSSCN----------------------------DLVTYDG-AGT  109 (203)
Q Consensus        67 ~~~~~~~~~~-------~~~v~~~~~~~~~~-~~~~~~~~~----------------------------~~~~~~~-~~~  109 (203)
                      .++.+..+..       ...+.+++++|++. .++.+....                            ..+.|+| ++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  276 (416)
T 2pm9_A          197 AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH  276 (416)
T ss_dssp             TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS
T ss_pred             CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC
Confidence            9988877765       35688888877653 222221110                            1234555 555


Q ss_pred             EEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCC-CEEEEecCCCcEEEE
Q psy8891         110 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDD-DYVAVGSIDGNIYVW  188 (203)
Q Consensus       110 ~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~v~~w  188 (203)
                      +|++++.|++|++||+++++++..+..+.                       ..+..+.++|++ .+|++++.|+.|++|
T Consensus       277 ~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-----------------------~~v~~~~~s~~~~~~l~s~~~d~~i~iw  333 (416)
T 2pm9_A          277 LLLSSGRDNTVLLWNPESAEQLSQFPARG-----------------------NWCFKTKFAPEAPDLFACASFDNKIEVQ  333 (416)
T ss_dssp             CEEEEESSSEEEEECSSSCCEEEEEECSS-----------------------SCCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred             eEEEEeCCCCEEEeeCCCCccceeecCCC-----------------------CceEEEEECCCCCCEEEEEecCCcEEEE
Confidence            66666666666666665555544443321                       123456678888 899999999999999


Q ss_pred             eCCCceeeee
Q psy8891         189 DCNTEQVEAV  198 (203)
Q Consensus       189 d~~~~~~~~~  198 (203)
                      |+.+++....
T Consensus       334 ~~~~~~~~~~  343 (416)
T 2pm9_A          334 TLQNLTNTLD  343 (416)
T ss_dssp             ESCCCCCSSC
T ss_pred             EccCCCCCcc
Confidence            9987765443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=1.6e-23  Score=164.02  Aligned_cols=152  Identities=16%  Similarity=0.223  Sum_probs=108.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC---eEE---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE---EE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE---TKF---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~---~~~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~---~~   72 (203)
                      +++|+|++++|++|+.|++|++||+.+.+   ...   .+......+.+.|+++.|++|+.|+.|++||++.++.   ..
T Consensus        60 ~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  139 (377)
T 3dwl_C           60 CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK  139 (377)
T ss_dssp             EEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee
Confidence            68999999999999999999999998754   221   1222344567889999999999999999999988763   55


Q ss_pred             eeee--CCeEEEEEecCCCceEEEecCCc----------------------------------------eEEEEcCCCCE
Q psy8891          73 DIEL--HGKITSLDLSKGTETKFAGSSCN----------------------------------------DLVTYDGAGTT  110 (203)
Q Consensus        73 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~  110 (203)
                      .+..  ...|.+++++|++..++.++...                                        ..+.|+|++++
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSC
T ss_pred             EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCE
Confidence            5553  46799999999887776654332                                        23568899999


Q ss_pred             EEEeeCCCeEEEEECCCCce----EEEEecc-ceEEEEEecCCcEEEE
Q psy8891         111 IISGHFDKKVRFWDFRAEEK----VRDIELH-GKITSLDLSKGKYYFV  153 (203)
Q Consensus       111 l~s~s~d~~i~iWd~~~~~~----~~~~~~~-~~v~~~~~~~~~~~~~  153 (203)
                      |++++.|++|++||+++++.    +..+..+ ..+.++.++++..+++
T Consensus       220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  267 (377)
T 3dwl_C          220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVA  267 (377)
T ss_dssp             EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEE
T ss_pred             EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEE
Confidence            99999999999999998876    5555554 3477887776655444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.91  E-value=1.7e-22  Score=156.51  Aligned_cols=188  Identities=13%  Similarity=0.170  Sum_probs=124.6

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCC-e--EEec-Cc----CceEEE----EeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTE-T--KFAG-SS----CNDLVT----YDGAGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~-~--~~~~-~~----~~~~~~----~~~~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      +|+|++..|++|+.|++|++||+...+ .  .... ..    ....+.    ++++++.|++++.|+.|++||++.++..
T Consensus       124 ~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  203 (357)
T 3i2n_A          124 GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR  203 (357)
T ss_dssp             GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee
Confidence            578999999999999999999998754 2  2211 11    112233    5688999999999999999999999887


Q ss_pred             EeeeeCCeEEEEEecC---CCceEEEecCCce----------------------------EEEEcCCCC-EEEEeeCCCe
Q psy8891          72 RDIELHGKITSLDLSK---GTETKFAGSSCND----------------------------LVTYDGAGT-TIISGHFDKK  119 (203)
Q Consensus        72 ~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~----------------------------~~~~~~~~~-~l~s~s~d~~  119 (203)
                      ........+.+++++|   ++..++++...+.                            .+.|+|+++ +|++++.|+.
T Consensus       204 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  283 (357)
T 3i2n_A          204 WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG  283 (357)
T ss_dssp             EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence            7766778899999998   7776665543322                            245778887 8999999999


Q ss_pred             EEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEE-EecCCCcEEEEeCCCcee
Q psy8891         120 VRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA-VGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       120 i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~s~d~~v~~wd~~~~~~  195 (203)
                      |++||++.+.........+.....  ......+...  ......+..+.++|++++|+ +|+.|+.|++||+.+.+.
T Consensus       284 i~iwd~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          284 LHLWKYEYPIQRSKKDSEGIEMGV--AGSVSLLQNV--TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEECCSCC--CCTTSCCCCC--CCEEEEEEEE--ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             EEEeecCCCcccccccCCCCcccc--ccccceeecc--ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            999998865543222111100000  0000000000  00112355677889999888 899999999999987664

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.6e-23  Score=171.61  Aligned_cols=176  Identities=11%  Similarity=0.058  Sum_probs=108.3

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCeE------Eec-CcCceEEEEeCC------CCEEEEecCCCeEEEEECCCceEE--
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTETK------FAG-SSCNDLVTYDGA------GTTIISGHFDKKVRFWDFRAEEKV--   71 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~~------~~~-~~~~~~~~~~~~------~~~l~s~~~D~~i~vwd~~~~~~~--   71 (203)
                      |+++.++|+|.|++|+|||+.+.+..      ..+ ......+.|.|+      +.+|+|++.|++|+|||+..++..  
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~  250 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH  250 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence            44455667889999999999765421      122 233445678875      579999999999999999765421  


Q ss_pred             ---------EeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEEeccc-e
Q psy8891          72 ---------RDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELHG-K  139 (203)
Q Consensus        72 ---------~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~-~~~~~~~~~-~  139 (203)
                               .++..| +.|.+++                   |+++ ..|++|+.|++|++||+++++ +...+..|. .
T Consensus       251 ~~~~~~~p~~~l~~h~~~v~sv~-------------------~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~  310 (524)
T 2j04_B          251 VFKMCEKPSLTLSLADSLITTFD-------------------FLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY  310 (524)
T ss_dssp             EEECCCSCSEEECCTTTCEEEEE-------------------ESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred             cceeecCceEEEEcCCCCEEEEE-------------------ecCC-CeEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence                     122222 3344444                   4443 379999999999999998663 334444442 2


Q ss_pred             EE--EEEecCCc-EEEEeec--Ce-------------eEE--e---eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         140 IT--SLDLSKGK-YYFVFAE--GF-------------KVQ--C---DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       140 v~--~~~~~~~~-~~~~~~~--~~-------------~~~--~---~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      |.  ...++++. .+++...  +.             ...  .   .+..+.|+|+++.|++++.|++|++||+++++++
T Consensus       311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~  390 (524)
T 2j04_B          311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV  390 (524)
T ss_dssp             EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC
T ss_pred             EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc
Confidence            21  34444432 3333221  10             111  1   2356889999999999999999999999999988


Q ss_pred             eeeccC
Q psy8891         197 AVLKDM  202 (203)
Q Consensus       197 ~~~~~~  202 (203)
                      .++.+|
T Consensus       391 ~~l~gH  396 (524)
T 2j04_B          391 HPLVSR  396 (524)
T ss_dssp             EEEEEC
T ss_pred             eeeecC
Confidence            888765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.91  E-value=1.7e-21  Score=155.85  Aligned_cols=171  Identities=27%  Similarity=0.382  Sum_probs=111.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEE
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKIT   81 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~   81 (203)
                      ++.++++.|++|+.|++|++||+.+.+..... .+...+.++..+++.|++|+.||+|++||+.+++.+..+..| +.|.
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~  217 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL  217 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE
Confidence            45679999999999999999999887654322 122334455568899999999999999999999888777655 5577


Q ss_pred             EEEecCCCceEEEecCCceEEE------------------------EcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891          82 SLDLSKGTETKFAGSSCNDLVT------------------------YDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      ++++++  ..+++++..+.+..                        ...++..|++++.|++|++||+++++++..+..+
T Consensus       218 ~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  295 (435)
T 1p22_A          218 HLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH  295 (435)
T ss_dssp             EEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCC
Confidence            777753  23333332222211                        1224556666666666666666666665555433


Q ss_pred             c-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         138 G-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       138 ~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      . .+.++.+                          ++.+|++|+.|+.|++||+++++++.++++|
T Consensus       296 ~~~v~~~~~--------------------------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h  335 (435)
T 1p22_A          296 KRGIACLQY--------------------------RDRLVVSGSSDNTIRLWDIECGACLRVLEGH  335 (435)
T ss_dssp             SSCEEEEEE--------------------------ETTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             CCcEEEEEe--------------------------CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC
Confidence            2 2332222                          4556677777777777777766666666554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.91  E-value=1.6e-21  Score=148.84  Aligned_cols=194  Identities=14%  Similarity=0.230  Sum_probs=139.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCce-EEEeeeeC-C
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE-KVRDIELH-G   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~-~~~~~~~~-~   78 (203)
                      |++|+|++++|+|||.|++|++||+++++..... .+......+.+++..+++++.++.+++|+..... .+..+..| .
T Consensus        72 ~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (318)
T 4ggc_A           72 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ  151 (318)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             EEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC
Confidence            6899999999999999999999999987653221 1223345566678899999999999999988764 34444443 5


Q ss_pred             eEEEEEecCCCceEEEecCCceEEE---------------------------EcCCCC---EEEEeeCCCeEEEEECCCC
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVT---------------------------YDGAGT---TIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~---~l~s~s~d~~i~iWd~~~~  128 (203)
                      .+..+.+.+++..++.+.....+..                           +.+++.   .+++++.+++|++||.+..
T Consensus       152 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~  231 (318)
T 4ggc_A          152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  231 (318)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred             ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence            6888888888887777665544433                           334333   2357788999999999988


Q ss_pred             ceEEEEeccceEEEEEecCCcEEEEeec----C----------ee------EEeeeEEEEEEcCCCEEEEecCCCcEEEE
Q psy8891         129 EKVRDIELHGKITSLDLSKGKYYFVFAE----G----------FK------VQCDFTRAVFVVDDDYVAVGSIDGNIYVW  188 (203)
Q Consensus       129 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~----------~~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~w  188 (203)
                      ...........+..+.+.+....++...    +          ..      +...+..++|+|++++|+||+.|++|+||
T Consensus       232 ~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          232 ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            8777766666676666655433322211    1          00      12246678899999999999999999999


Q ss_pred             eCCCcee
Q psy8891         189 DCNTEQV  195 (203)
Q Consensus       189 d~~~~~~  195 (203)
                      |+.+..|
T Consensus       312 d~~~~dP  318 (318)
T 4ggc_A          312 RCFELDP  318 (318)
T ss_dssp             CCSCCCC
T ss_pred             ECCCCCC
Confidence            9986543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.91  E-value=7.5e-23  Score=158.83  Aligned_cols=168  Identities=18%  Similarity=0.327  Sum_probs=120.7

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeEEe------cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETKFA------GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~~~------~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      +++|+| ++..|++|+.|++|++||+++.+....      +......+.++|+++.|++++.|+.|++||++.++....+
T Consensus       120 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  199 (366)
T 3k26_A          120 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI  199 (366)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHH
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccc
Confidence            688999 999999999999999999988664322      2223445678899999999999999999999877543322


Q ss_pred             e-----------------------------eCCeEEEEEecCCCceEEEecCCceE------------------------
Q psy8891          75 E-----------------------------LHGKITSLDLSKGTETKFAGSSCNDL------------------------  101 (203)
Q Consensus        75 ~-----------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------  101 (203)
                      .                             ....|.+++++  +..++.+...+.+                        
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  277 (366)
T 3k26_A          200 KESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI  277 (366)
T ss_dssp             HHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEE
T ss_pred             ceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhe
Confidence            2                             23456666666  3344444333322                        


Q ss_pred             -------------EEEcCC--CCEEEEeeCCCeEEEEECCCCceEE----EEeccceEEEEEecCCcEEEEeecCeeEEe
Q psy8891         102 -------------VTYDGA--GTTIISGHFDKKVRFWDFRAEEKVR----DIELHGKITSLDLSKGKYYFVFAEGFKVQC  162 (203)
Q Consensus       102 -------------~~~~~~--~~~l~s~s~d~~i~iWd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  162 (203)
                                   +.|+|+  +++|++++.|+.|++||++++++..    .+..+.                     ...
T Consensus       278 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---------------------~~~  336 (366)
T 3k26_A          278 LGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK---------------------CGA  336 (366)
T ss_dssp             EEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT---------------------CCS
T ss_pred             eccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc---------------------cCC
Confidence                         345566  9999999999999999999876432    222220                     011


Q ss_pred             eeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      .+..+.++|++++|++|+.|+.|++||+.+
T Consensus       337 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          337 AIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            344566788999999999999999999863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.6e-21  Score=146.44  Aligned_cols=194  Identities=15%  Similarity=0.202  Sum_probs=138.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC---e--EEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE---T--KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~---~--~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++|+|++..|++|+.|+.|++||+....   .  ....+ ...+..+..+++.|++++.|+.|++||  .++....+..
T Consensus        64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~  140 (313)
T 3odt_A           64 SVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH-QGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQA  140 (313)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC-SSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred             EEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhc-ccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEeccc
Confidence            68899999999999999999999987532   1  12111 122223333678999999999999999  5555555554


Q ss_pred             -CCeEEEEEecC-CCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          77 -HGKITSLDLSK-GTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        77 -~~~v~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                       ...+.++.+.+ +...++.+.....                      .+.|+|++. +++++.|+.|++||+++++++.
T Consensus       141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~  219 (313)
T 3odt_A          141 HNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR  219 (313)
T ss_dssp             CSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh
Confidence             46788888877 6666665554332                      345677777 9999999999999999999988


Q ss_pred             EEecc-ceEEEEEecCCcEEEEeecCeeE-----------------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         133 DIELH-GKITSLDLSKGKYYFVFAEGFKV-----------------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       133 ~~~~~-~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      .+..+ ..+.++.++++..++.......+                 ...+..+.++|+++ +++++.|+.|++||+++++
T Consensus       220 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          220 TYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred             hhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence            88755 56889998887643332221100                 11455677889887 6679999999999999888


Q ss_pred             eeeeec
Q psy8891         195 VEAVLK  200 (203)
Q Consensus       195 ~~~~~~  200 (203)
                      .+...+
T Consensus       299 ~~~~~~  304 (313)
T 3odt_A          299 WASEDE  304 (313)
T ss_dssp             CCC---
T ss_pred             eeehhh
Confidence            776543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.90  E-value=1.1e-21  Score=157.81  Aligned_cols=178  Identities=22%  Similarity=0.374  Sum_probs=128.6

Q ss_pred             ceEEc--CCCCEEEEEeCCCcEEEEeCCCCCeE------------------------EecCcCceEEEEeCCCCEEEEec
Q psy8891           2 CAKFL--GDPTKVVSGSCDRTLKIWDLRSTETK------------------------FAGSSCNDLVTYDGAGTTIISGH   55 (203)
Q Consensus         2 ~~~~~--~~~~~l~t~s~D~~v~lwdl~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~s~~   55 (203)
                      +++|+  +++..+++|+.|++|++||+.+....                        ........+..++++++.+++|+
T Consensus       208 ~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  287 (464)
T 3v7d_B          208 CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS  287 (464)
T ss_dssp             EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred             EEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe
Confidence            45666  68889999999999999999864321                        11112223445677889999999


Q ss_pred             CCCeEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891          56 FDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        56 ~D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                      .|+.|++||+++++.+..+..| ..|.++.                   |+|++..+++++.|++|++||+++++++..+
T Consensus       288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~-------------------~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTI-------------------YDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEE-------------------EETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEecCCCCCEEEEE-------------------EcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            9999999999999888777644 4466554                   4556678999999999999999988888887


Q ss_pred             ecc-ceEEEEEecCCcEEEEeecCeeE-----------E----eeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         135 ELH-GKITSLDLSKGKYYFVFAEGFKV-----------Q----CDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       135 ~~~-~~v~~~~~~~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                      ..+ ..+..+.+++.........+...           .    .......+.+++.++++|+ |+.|++||++++++++.
T Consensus       349 ~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          349 QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             CCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             eCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            655 44777777643222222222100           0    0123457889999999998 99999999999999986


Q ss_pred             e
Q psy8891         199 L  199 (203)
Q Consensus       199 ~  199 (203)
                      +
T Consensus       428 ~  428 (464)
T 3v7d_B          428 N  428 (464)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.8e-21  Score=147.06  Aligned_cols=195  Identities=14%  Similarity=0.199  Sum_probs=139.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc---eEEEeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE---EKVRDIE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~---~~~~~~~   75 (203)
                      +++| |++.+|++|+.||+|++||+.+.+..   ..+......+.++|+++.|++++.|+.|++||+...   +.+..+.
T Consensus        23 ~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~  101 (313)
T 3odt_A           23 DVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLI  101 (313)
T ss_dssp             EEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEEC
T ss_pred             EEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchh
Confidence            6788 99999999999999999999875532   223333456788999999999999999999998764   3344444


Q ss_pred             e-CCeEEEEEecCCCceEEEecCCceE---------------------EEEcC-CCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          76 L-HGKITSLDLSKGTETKFAGSSCNDL---------------------VTYDG-AGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        76 ~-~~~v~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      . ...|.++.+.  +..++.+.....+                     +.|.+ ++..+++++.|+.|++||.  ++...
T Consensus       102 ~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~  177 (313)
T 3odt_A          102 GHQGNVCSLSFQ--DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIK  177 (313)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEE
T ss_pred             hcccCEEEEEec--CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEE
Confidence            3 3568888873  3455544433322                     33444 8899999999999999994  44555


Q ss_pred             EEec--cceEEEEEecCCcEEEEeecCee-----------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         133 DIEL--HGKITSLDLSKGKYYFVFAEGFK-----------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       133 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                      .+..  ...+..+.++++..++.......                 ....+..+.++|++ .|++++.|+.|++||++++
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          178 TFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             EECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             EEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence            5553  35578887776655332221110                 11235667888888 6899999999999999999


Q ss_pred             eeeeeeccC
Q psy8891         194 QVEAVLKDM  202 (203)
Q Consensus       194 ~~~~~~~~~  202 (203)
                      +++.+++.|
T Consensus       257 ~~~~~~~~~  265 (313)
T 3odt_A          257 SLKQVITLP  265 (313)
T ss_dssp             CEEEEEECS
T ss_pred             ceeEEEecc
Confidence            999988765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.90  E-value=6.1e-21  Score=152.03  Aligned_cols=197  Identities=15%  Similarity=0.270  Sum_probs=138.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++||+++ .|+.| .|++|+|||+.+++..  +...   ..+..++|+|++++|++|+.|++|+|||+++++.++.+..
T Consensus       110 ~l~wS~~n-~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~  187 (420)
T 4gga_A          110 LVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS  187 (420)
T ss_dssp             CEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             eEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC
Confidence            47888764 66665 5999999999987753  2221   2245678999999999999999999999999999888876


Q ss_pred             C-CeEEEEEecCCCceEEEecCC------------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCce-
Q psy8891          77 H-GKITSLDLSKGTETKFAGSSC------------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK-  130 (203)
Q Consensus        77 ~-~~v~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~-  130 (203)
                      | ..+.++++++  ..++.+...                        .....|.|++.++++++.|+.|++||..+++. 
T Consensus       188 h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~  265 (420)
T 4gga_A          188 HSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  265 (420)
T ss_dssp             CSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC
T ss_pred             CCCceEEEeeCC--CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc
Confidence            5 4466666543  333333222                        12356788999999999999999999987653 


Q ss_pred             ---EEEEec-cceEEEEEecCCc-EEEEeecC--------------e-----eEEeeeEEEEEEcCCCEEEEec--CCCc
Q psy8891         131 ---VRDIEL-HGKITSLDLSKGK-YYFVFAEG--------------F-----KVQCDFTRAVFVVDDDYVAVGS--IDGN  184 (203)
Q Consensus       131 ---~~~~~~-~~~v~~~~~~~~~-~~~~~~~~--------------~-----~~~~~~~~~~~~~~~~~l~s~s--~d~~  184 (203)
                         +..... ...|..+.+++.. .++....+              .     .....+....+.++++.+++++  .|+.
T Consensus       266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~  345 (420)
T 4gga_A          266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ  345 (420)
T ss_dssp             SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred             ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE
Confidence               223322 2457777766532 22222111              0     0112345677889999887754  7999


Q ss_pred             EEEEeCCCceeeeeeccC
Q psy8891         185 IYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       185 v~~wd~~~~~~~~~~~~~  202 (203)
                      |++||+.+++++.++++|
T Consensus       346 I~iwd~~~~~~v~~l~gH  363 (420)
T 4gga_A          346 LVIWKYPTMAKVAELKGH  363 (420)
T ss_dssp             EEEEETTTCCEEEEECCC
T ss_pred             EEEEECCCCcEEEEEcCC
Confidence            999999999999999887

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.90  E-value=4.2e-22  Score=156.71  Aligned_cols=184  Identities=16%  Similarity=0.225  Sum_probs=130.3

Q ss_pred             ceEEc----CCCCE-EEEEeCCCcEEEEeCCC------CCe-------EEe--------cCcCceEEEEeCCCCEEEEec
Q psy8891           2 CAKFL----GDPTK-VVSGSCDRTLKIWDLRS------TET-------KFA--------GSSCNDLVTYDGAGTTIISGH   55 (203)
Q Consensus         2 ~~~~~----~~~~~-l~t~s~D~~v~lwdl~~------~~~-------~~~--------~~~~~~~~~~~~~~~~l~s~~   55 (203)
                      +++|+    |++.. |++|+.|+.|++||+..      .+.       .+.        .......+.+.|++ .|++++
T Consensus       126 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~  204 (397)
T 1sq9_A          126 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF  204 (397)
T ss_dssp             EEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC
T ss_pred             EEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe
Confidence            67899    99999 99999999999999976      332       221        12224557889999 999999


Q ss_pred             CCCeEEEEECCCceEEEeeee-------CCeEEEEEecCCCceEEEecCC---c--------------------------
Q psy8891          56 FDKKVRFWDFRAEEKVRDIEL-------HGKITSLDLSKGTETKFAGSSC---N--------------------------   99 (203)
Q Consensus        56 ~D~~i~vwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~---~--------------------------   99 (203)
                      .|+.|++||+++++.+..+..       ...+.++++++++..++.+...   .                          
T Consensus       205 ~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~  284 (397)
T 1sq9_A          205 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS  284 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccc
Confidence            999999999999998888876       5779999999887665544322   1                          


Q ss_pred             ----------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe------ccceEEEEEecCCcEEEEeecCeeEEee
Q psy8891         100 ----------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE------LHGKITSLDLSKGKYYFVFAEGFKVQCD  163 (203)
Q Consensus       100 ----------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~  163 (203)
                                ..+.|+|++++|++++.|++|++||+++++++..+.      .+..-    ...+..    .........
T Consensus       285 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~g~~----~~~~~~~~~  356 (397)
T 1sq9_A          285 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED----ILAVDE----HGDSLAEPG  356 (397)
T ss_dssp             -CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG----CCCBCT----TSCBCSSCC
T ss_pred             ccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh----hhcccc----ccccccCCc
Confidence                      235678889999999999999999999988877776      22000    000000    000000123


Q ss_pred             eEEEEEEcCC----------CEEEEecCCCcEEEEeCCCce
Q psy8891         164 FTRAVFVVDD----------DYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       164 ~~~~~~~~~~----------~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      +..+.++|++          .+|++|+.|+.|++||+++|+
T Consensus       357 v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          357 VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            4556777887          799999999999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.90  E-value=1.8e-21  Score=154.16  Aligned_cols=192  Identities=16%  Similarity=0.248  Sum_probs=142.2

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ec--CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-Ce
Q psy8891           5 FLGDPTKVVSGSCDRTLKIWDLRSTETKF--AG--SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GK   79 (203)
Q Consensus         5 ~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~--~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~   79 (203)
                      +.+++..+++++.|++|++||+.+++...  ..  ......+.|+|++++|++|+.||.|++||+.+++.+..+..| +.
T Consensus        99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  178 (401)
T 4aez_A           99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR  178 (401)
T ss_dssp             EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc
Confidence            34445678999999999999999876432  22  223456789999999999999999999999999888777654 56


Q ss_pred             EEEEEecCCCceEEEecCCc------------------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          80 ITSLDLSKGTETKFAGSSCN------------------------DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                      |.++++.+  ..++.+...+                        ..+.|+|++.+|++++.|++|++||++++++...+.
T Consensus       179 v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  256 (401)
T 4aez_A          179 VGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT  256 (401)
T ss_dssp             EEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred             eEEEEECC--CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence            88888743  3444333221                        235788999999999999999999999998887776


Q ss_pred             cc-ceEEEEEecCC-cEEEEeec----Cee---------------EEeeeEEEEEEcCCCEEEE--ecCCCcEEEEeCCC
Q psy8891         136 LH-GKITSLDLSKG-KYYFVFAE----GFK---------------VQCDFTRAVFVVDDDYVAV--GSIDGNIYVWDCNT  192 (203)
Q Consensus       136 ~~-~~v~~~~~~~~-~~~~~~~~----~~~---------------~~~~~~~~~~~~~~~~l~s--~s~d~~v~~wd~~~  192 (203)
                      .+ ..+.++.+++. ..+++...    +..               ....+..+.++|++++|++  |+.|+.|++||+.+
T Consensus       257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            44 45888888774 34444321    110               1123567788999999999  55899999999998


Q ss_pred             ceeeee
Q psy8891         193 EQVEAV  198 (203)
Q Consensus       193 ~~~~~~  198 (203)
                      ++....
T Consensus       337 ~~~~~~  342 (401)
T 4aez_A          337 SGLTKQ  342 (401)
T ss_dssp             TEEEEE
T ss_pred             ccceeE
Confidence            766665

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.3e-22  Score=160.01  Aligned_cols=174  Identities=11%  Similarity=0.092  Sum_probs=133.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC---eEE--ecC----------------------------------------
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE---TKF--AGS----------------------------------------   36 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~---~~~--~~~----------------------------------------   36 (203)
                      |++|++||+.|+++ .++.|++||+.+++   ...  ...                                        
T Consensus         9 ~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (450)
T 2vdu_B            9 NLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT   87 (450)
T ss_dssp             EEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred             EEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence            68899999966665 57899999988766   211  100                                        


Q ss_pred             ---------------cCceEEEEeCCCCEE-EEecCCCeEEEEECC--CceEEEeee---eCCeEEEEEecCCCceEEEe
Q psy8891          37 ---------------SCNDLVTYDGAGTTI-ISGHFDKKVRFWDFR--AEEKVRDIE---LHGKITSLDLSKGTETKFAG   95 (203)
Q Consensus        37 ---------------~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~--~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~   95 (203)
                                     .....+.|+|+++.| ++|+.|++|+|||+.  .++.+..+.   ....|.+++++|++..++.+
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  167 (450)
T 2vdu_B           88 AAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA  167 (450)
T ss_dssp             ------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             CccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence                           023446789999986 999999999999999  777777664   34679999999998877765


Q ss_pred             cCCc---------------------------eEEEEcCC---CCEEEEeeCCCeEEEEECCCCceEEEEe-ccceEEEEE
Q psy8891          96 SSCN---------------------------DLVTYDGA---GTTIISGHFDKKVRFWDFRAEEKVRDIE-LHGKITSLD  144 (203)
Q Consensus        96 ~~~~---------------------------~~~~~~~~---~~~l~s~s~d~~i~iWd~~~~~~~~~~~-~~~~v~~~~  144 (203)
                      ....                           ..+.|+|+   +++|++++.|++|++||+++++.+..+. .+.      
T Consensus       168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~------  241 (450)
T 2vdu_B          168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK------  241 (450)
T ss_dssp             ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS------
T ss_pred             eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC------
Confidence            4311                           13578899   8899999999999999999887765532 121      


Q ss_pred             ecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         145 LSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                       ..+..+.|+ ++++|++|+.|++|++||+.+++++.+++
T Consensus       242 -----------------~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          242 -----------------HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             -----------------SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             -----------------CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence                             123455677 88999999999999999999999998876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.4e-22  Score=171.14  Aligned_cols=193  Identities=17%  Similarity=0.247  Sum_probs=143.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE--Ee-cCcCceEEEEeCC--CCEEEEecCCCeEEEEECCCce--EEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK--FA-GSSCNDLVTYDGA--GTTIISGHFDKKVRFWDFRAEE--KVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~--~~-~~~~~~~~~~~~~--~~~l~s~~~D~~i~vwd~~~~~--~~~   72 (203)
                      +++|+|++++|++|+.||+|++||+....  ..  .. +......+.|.++  ++.|++|+.||+|++||++.++  .+.
T Consensus        14 ~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~   93 (753)
T 3jro_A           14 DAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA   93 (753)
T ss_dssp             EECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccc
Confidence            68899999999999999999999997432  21  22 2223445677776  8899999999999999999886  444


Q ss_pred             eeee-CCeEEEEEecCC--CceEEEecCCce-------------------------EEEEcC-------------CCCEE
Q psy8891          73 DIEL-HGKITSLDLSKG--TETKFAGSSCND-------------------------LVTYDG-------------AGTTI  111 (203)
Q Consensus        73 ~~~~-~~~v~~~~~~~~--~~~~~~~~~~~~-------------------------~~~~~~-------------~~~~l  111 (203)
                      .+.. ...|.+++++|+  +..++.+...+.                         .+.|+|             ++..+
T Consensus        94 ~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l  173 (753)
T 3jro_A           94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  173 (753)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCE
T ss_pred             cccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEE
Confidence            4443 467999999998  777766554432                         245777             58899


Q ss_pred             EEeeCCCeEEEEECCCCc----eEEEEecc-ceEEEEEecCC---cEEEEeecC--e-e--------------------E
Q psy8891         112 ISGHFDKKVRFWDFRAEE----KVRDIELH-GKITSLDLSKG---KYYFVFAEG--F-K--------------------V  160 (203)
Q Consensus       112 ~s~s~d~~i~iWd~~~~~----~~~~~~~~-~~v~~~~~~~~---~~~~~~~~~--~-~--------------------~  160 (203)
                      ++++.|++|++||++++.    +...+..+ ..|.++.++++   ...++....  . .                    .
T Consensus       174 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~  253 (753)
T 3jro_A          174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF  253 (753)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC
T ss_pred             EEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC
Confidence            999999999999998774    33344433 45899999887   555554321  0 0                    1


Q ss_pred             EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       161 ~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      ...+..+.++|++++|++|+.||.|++||++++.
T Consensus       254 ~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            1234567899999999999999999999998543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.7e-22  Score=160.41  Aligned_cols=199  Identities=13%  Similarity=0.159  Sum_probs=139.7

Q ss_pred             ceEEcCCCCEE-EEEeCCCcEEEEeCC--CCCeE--E---ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE-
Q psy8891           2 CAKFLGDPTKV-VSGSCDRTLKIWDLR--STETK--F---AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR-   72 (203)
Q Consensus         2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~--~~~~~--~---~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~-   72 (203)
                      +++|+|+++.| ++|+.|++|++||+.  +++..  .   ........+.|+|+++.|++|+.|+.|++||+..++... 
T Consensus       107 ~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~  186 (450)
T 2vdu_B          107 NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF  186 (450)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc
Confidence            68899999996 999999999999998  55432  1   122334557899999999999999999999998776443 


Q ss_pred             ---eeeeC-CeEEEEEecCC---CceEEEecCCce------------------------EEEEcCCCCEEEEeeCCCeEE
Q psy8891          73 ---DIELH-GKITSLDLSKG---TETKFAGSSCND------------------------LVTYDGAGTTIISGHFDKKVR  121 (203)
Q Consensus        73 ---~~~~~-~~v~~~~~~~~---~~~~~~~~~~~~------------------------~~~~~~~~~~l~s~s~d~~i~  121 (203)
                         .+..| +.|.+++++|+   +..++.+.....                        .+.|+ ++++|++++.|++|+
T Consensus       187 ~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~  265 (450)
T 2vdu_B          187 TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIF  265 (450)
T ss_dssp             CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEE
T ss_pred             cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEE
Confidence               44443 67999999998   766665543322                        25677 899999999999999


Q ss_pred             EEECCCCceEEEEeccceEEEEEecC--CcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec-CCCcEEEEeC--CCc---
Q psy8891         122 FWDFRAEEKVRDIELHGKITSLDLSK--GKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS-IDGNIYVWDC--NTE---  193 (203)
Q Consensus       122 iWd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~v~~wd~--~~~---  193 (203)
                      +||+++++++..+..+..+..+....  ....+...........+..+.++|++++|++++ .|+.|++||+  .++   
T Consensus       266 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l  345 (450)
T 2vdu_B          266 AWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDL  345 (450)
T ss_dssp             EEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCE
T ss_pred             EEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCce
Confidence            99999999888776543211111100  000000000001122345677889999999998 8999999999  565   


Q ss_pred             eeeeeecc
Q psy8891         194 QVEAVLKD  201 (203)
Q Consensus       194 ~~~~~~~~  201 (203)
                      +++.+++.
T Consensus       346 ~~~~~~~~  353 (450)
T 2vdu_B          346 ALKQIITF  353 (450)
T ss_dssp             EEEEEEEC
T ss_pred             eeccEecc
Confidence            66666654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.90  E-value=9e-21  Score=149.09  Aligned_cols=196  Identities=17%  Similarity=0.188  Sum_probs=132.8

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeC---CCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDG---AGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~---~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      +++|+| ++..|++++.|++|++||+.+.+..  .........+.+.+   ++..+++++.|+.|++||++.++.+..+.
T Consensus       104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  183 (408)
T 4a11_B          104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ  183 (408)
T ss_dssp             EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred             EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence            678999 7789999999999999999886643  22223333455555   45599999999999999999988877776


Q ss_pred             eC-CeEEEEEecCCCce-EEEecCCc---------------------------------------eEEEEcCCCCEEEEe
Q psy8891          76 LH-GKITSLDLSKGTET-KFAGSSCN---------------------------------------DLVTYDGAGTTIISG  114 (203)
Q Consensus        76 ~~-~~v~~~~~~~~~~~-~~~~~~~~---------------------------------------~~~~~~~~~~~l~s~  114 (203)
                      .+ +.|.+++++|++.. ++.+...+                                       ..+.|+|++.+|+++
T Consensus       184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  263 (408)
T 4a11_B          184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV  263 (408)
T ss_dssp             CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence            44 67999999998875 44443221                                       235688899999999


Q ss_pred             eCCCeEEEEECCCCceEEEEecc---------------------------ceEEEEEecCCcEEEEeecCeeEEeeeEEE
Q psy8891         115 HFDKKVRFWDFRAEEKVRDIELH---------------------------GKITSLDLSKGKYYFVFAEGFKVQCDFTRA  167 (203)
Q Consensus       115 s~d~~i~iWd~~~~~~~~~~~~~---------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (203)
                      +.|+.|++||+++++.......+                           +.+.-+.+..........   .....+..+
T Consensus       264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~v~~~  340 (408)
T 4a11_B          264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK---GHYKTVDCC  340 (408)
T ss_dssp             ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC---CCSSCEEEE
T ss_pred             cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec---cCCCeEEEE
Confidence            99999999999987653322110                           011111111111110000   012345678


Q ss_pred             EEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         168 VFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       168 ~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .++|++++|++|+.|+.|++||+++++++...+
T Consensus       341 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          341 VFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             EEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred             EEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            899999999999999999999999998877653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.90  E-value=6.2e-21  Score=169.59  Aligned_cols=201  Identities=18%  Similarity=0.261  Sum_probs=153.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeC--CCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++|+|++++|++|+.|++|++||+.+++...  . +......+.+.+  ++..+++|+.|++|++||+++++.+..+..
T Consensus       662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~  741 (1249)
T 3sfz_A          662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG  741 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC
T ss_pred             EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC
Confidence            68999999999999999999999999876532  2 223344567777  456899999999999999999988877765


Q ss_pred             C-CeEEEEEecCCCceEEEecCCce-------------------------------------------------------
Q psy8891          77 H-GKITSLDLSKGTETKFAGSSCND-------------------------------------------------------  100 (203)
Q Consensus        77 ~-~~v~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  100 (203)
                      | +.|.+++++|++..+++++..+.                                                       
T Consensus       742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v  821 (1249)
T 3sfz_A          742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV  821 (1249)
T ss_dssp             CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred             CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence            5 57899999988876665443222                                                       


Q ss_pred             -----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeec
Q psy8891         101 -----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAE  156 (203)
Q Consensus       101 -----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~  156 (203)
                                             .+.|+|++..+++++.|+.|++||+.++..+..+..+ ..+.++.++++...++...
T Consensus       822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s  901 (1249)
T 3sfz_A          822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS  901 (1249)
T ss_dssp             EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe
Confidence                                   2346677888999999999999999988887777655 4588888877654443321


Q ss_pred             C--e-eE----------------------------------------------------EeeeEEEEEEcCCCEEEEecC
Q psy8891         157 G--F-KV----------------------------------------------------QCDFTRAVFVVDDDYVAVGSI  181 (203)
Q Consensus       157 ~--~-~~----------------------------------------------------~~~~~~~~~~~~~~~l~s~s~  181 (203)
                      .  . .+                                                    ...+..++++|+++++++|+.
T Consensus       902 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~  981 (1249)
T 3sfz_A          902 DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE  981 (1249)
T ss_dssp             TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcC
Confidence            1  0 00                                                    012456778999999999999


Q ss_pred             CCcEEEEeCCCceeeeeeccC
Q psy8891         182 DGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       182 d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      ||.|++||+.+++.+..+++|
T Consensus       982 ~g~i~i~d~~~~~~~~~~~~h 1002 (1249)
T 3sfz_A          982 DGAIKIIELPNNRVFSSGVGH 1002 (1249)
T ss_dssp             TSCCEEEETTTTSCEEECCCC
T ss_pred             CCCEEEEEcCCCceeeecccC
Confidence            999999999999998887765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.90  E-value=6.1e-21  Score=152.88  Aligned_cols=195  Identities=21%  Similarity=0.318  Sum_probs=136.7

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEE
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKIT   81 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~   81 (203)
                      ++++++..|+||+.|++|++||+.+++...... +...+.+...+++.|++|+.|++|++||+.+++.+..+..| ..|.
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~  203 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR  203 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE
Confidence            467789999999999999999999877543222 11222233334679999999999999999999988887755 5688


Q ss_pred             EEEecCCCceEEEecCCceEEEE---------------------cCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ce
Q psy8891          82 SLDLSKGTETKFAGSSCNDLVTY---------------------DGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GK  139 (203)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~  139 (203)
                      ++.+.+  ..+++++..+.+..|                     ..++..+++++.|++|++||+++++++..+..+ ..
T Consensus       204 ~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  281 (445)
T 2ovr_B          204 CMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR  281 (445)
T ss_dssp             EEEEET--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC
T ss_pred             EEEecC--CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc
Confidence            888753  445555544433322                     235778999999999999999999888887755 45


Q ss_pred             EEEEEecCCcEEEEee-cCee---------EEee-----eEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         140 ITSLDLSKGKYYFVFA-EGFK---------VQCD-----FTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       140 v~~~~~~~~~~~~~~~-~~~~---------~~~~-----~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      +.++.+.. ..++... .+..         ....     .....+.+++++|++|+.|+.|++||+++++++.++++
T Consensus       282 v~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          282 VYSLQFDG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             EEEEEECS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             eEEEEECC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence            77777733 2222211 1110         0000     01123445788999999999999999999999998875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.89  E-value=8.7e-22  Score=160.32  Aligned_cols=155  Identities=14%  Similarity=0.131  Sum_probs=109.8

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCc-----CceEEEEeCCCCEEEEecCCCeEEEEECCCce------
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSS-----CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE------   69 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~------   69 (203)
                      .+|+|||||++|++++.||+|++||.+.......+..     ....++|+|+++.|++|+.||+|+|||+..+.      
T Consensus        89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~  168 (588)
T 2j04_A           89 RVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF  168 (588)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc
Confidence            3789999999999999999999999654111112111     24568899999999999999999999998874      


Q ss_pred             -EEEeeeeC-----CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEe-ccce
Q psy8891          70 -KVRDIELH-----GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---VRDIE-LHGK  139 (203)
Q Consensus        70 -~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~---~~~~~-~~~~  139 (203)
                       .+.++..+     ..|.++                   .|+|+|  +++++.|++|++||+..+..   .+++. .+. 
T Consensus       169 i~l~ti~~~~~gh~~~V~sV-------------------awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~-  226 (588)
T 2j04_A          169 YFESSIRLSDAGSKDWVTHI-------------------VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR-  226 (588)
T ss_dssp             EEEEEEECSCTTCCCCEEEE-------------------EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS-
T ss_pred             eeeeeeecccccccccEEEE-------------------EEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc-
Confidence             24454322     245554                   466677  78888999999999987663   22332 211 


Q ss_pred             EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         140 ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       140 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                                            ..+..+.|+  ++.|++++ +++|++||..+++......+|
T Consensus       227 ----------------------~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh  264 (588)
T 2j04_A          227 ----------------------RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS  264 (588)
T ss_dssp             ----------------------SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC
T ss_pred             ----------------------CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC
Confidence                                  012344565  57899987 699999999988774443354

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=6.9e-22  Score=153.49  Aligned_cols=154  Identities=6%  Similarity=0.011  Sum_probs=113.3

Q ss_pred             ceEEcC--CCCEEEEEeCCCcEEEEeCCCCCeEEe---c-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE-Eee
Q psy8891           2 CAKFLG--DPTKVVSGSCDRTLKIWDLRSTETKFA---G-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV-RDI   74 (203)
Q Consensus         2 ~~~~~~--~~~~l~t~s~D~~v~lwdl~~~~~~~~---~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~-~~~   74 (203)
                      +++|+|  ++..++||+.|++|++||+++++....   . ......+.++|++.+|++|+.|+.|++||+++++.+ ..+
T Consensus       130 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~  209 (343)
T 3lrv_A          130 YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF  209 (343)
T ss_dssp             EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC
T ss_pred             EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE
Confidence            678999  999999999999999999998765321   1 122456789999999999999999999999998866 566


Q ss_pred             ee--CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEE
Q psy8891          75 EL--HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYF  152 (203)
Q Consensus        75 ~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  152 (203)
                      ..  .++|.+++|+                   |+|.+|++++. ++|++||+++++....+..... ....+       
T Consensus       210 ~~~h~~~v~~l~fs-------------------~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~-~~~~~-------  261 (343)
T 3lrv_A          210 PVDEEAKIKEVKFA-------------------DNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTI-PEFKT-------  261 (343)
T ss_dssp             CCCTTSCEEEEEEC-------------------TTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-------------
T ss_pred             eccCCCCEEEEEEe-------------------CCCCEEEEEeC-CeEEEEEcCCCCcceeeccccc-ccccc-------
Confidence            55  3567666554                   56678999995 5999999998776443321100 00000       


Q ss_pred             EeecCeeEEeeeEEEEEEcCCCEEEEecC-CCcEEEEeCCCc
Q psy8891         153 VFAEGFKVQCDFTRAVFVVDDDYVAVGSI-DGNIYVWDCNTE  193 (203)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~v~~wd~~~~  193 (203)
                                .-..+.|+|++++|++++. |+.+++|++.++
T Consensus       262 ----------~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          262 ----------GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             ----------CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ----------cceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence                      0024678899999999998 999999998654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.3e-21  Score=151.94  Aligned_cols=153  Identities=7%  Similarity=0.023  Sum_probs=111.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCC---------CCeE--Ee--cCcCceEEEEeC--CCCEEEEecCCCeEEEEECC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRS---------TETK--FA--GSSCNDLVTYDG--AGTTIISGHFDKKVRFWDFR   66 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~---------~~~~--~~--~~~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~   66 (203)
                      ++.|+|+   ++|||.|++|++|+...         .+..  ..  +......+.+.|  +++++++|+.|++|++||++
T Consensus        81 ~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~  157 (343)
T 3lrv_A           81 TGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE  157 (343)
T ss_dssp             TTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS
T ss_pred             eeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC
Confidence            3556777   99999999999997763         3211  11  112234567788  89999999999999999999


Q ss_pred             CceEEEeeeeC--CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceE-EEEec-cceEEE
Q psy8891          67 AEEKVRDIELH--GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV-RDIEL-HGKITS  142 (203)
Q Consensus        67 ~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~-~~~~~-~~~v~~  142 (203)
                      +++.......+  ..+.+                   +.|+|+|.+|++|+.|++|++||+++++.. ..+.. |..   
T Consensus       158 ~~~~~~~~~~~~~~~i~~-------------------~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~---  215 (343)
T 3lrv_A          158 DDSQYIVHSAKSDVEYSS-------------------GVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA---  215 (343)
T ss_dssp             SSCEEEEECCCSSCCCCE-------------------EEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS---
T ss_pred             CCcEEEEEecCCCCceEE-------------------EEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC---
Confidence            88875443221  22333                   456677889999999999999999998876 55554 211   


Q ss_pred             EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                          .+..+.|+|++.+|++++ |++|++||+++++.+.+++
T Consensus       216 --------------------~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~  252 (343)
T 3lrv_A          216 --------------------KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP  252 (343)
T ss_dssp             --------------------CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred             --------------------CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence                                234556778999999999 5599999999988766554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=5.3e-20  Score=144.61  Aligned_cols=193  Identities=10%  Similarity=0.105  Sum_probs=148.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeCCeEEEEEec
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLS   86 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~   86 (203)
                      ..+++++.|++|++||+.+++..  ...+.....+.++|+++.| ++++.|++|++||+.+++.+..+..+..+..++++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s   82 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS   82 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence            46889999999999999886643  2233334557889999876 78889999999999999999888888899999999


Q ss_pred             CCCceEEEec-CCce----------------------EEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEeccceEEE
Q psy8891          87 KGTETKFAGS-SCND----------------------LVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELHGKITS  142 (203)
Q Consensus        87 ~~~~~~~~~~-~~~~----------------------~~~~~~~~~~l-~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~  142 (203)
                      |++..++... ....                      .+.|+|+++.| ++++.|++|++||+.+++.+..+..+..+..
T Consensus        83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  162 (391)
T 1l0q_A           83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG  162 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcce
Confidence            9988775433 2222                      24688999877 6888899999999999998888887777888


Q ss_pred             EEecCCcE-EEEeecC--ee---------E------EeeeEEEEEEcCCCEEEEec---CCCcEEEEeCCCceeeeeecc
Q psy8891         143 LDLSKGKY-YFVFAEG--FK---------V------QCDFTRAVFVVDDDYVAVGS---IDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       143 ~~~~~~~~-~~~~~~~--~~---------~------~~~~~~~~~~~~~~~l~s~s---~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      +.++++.. +++....  ..         .      ......+.++|++++|++++   .++.|++||+++++++..++.
T Consensus       163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~  242 (391)
T 1l0q_A          163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence            88887653 3333211  10         0      11234567889999998888   699999999999999888865


Q ss_pred             C
Q psy8891         202 M  202 (203)
Q Consensus       202 ~  202 (203)
                      +
T Consensus       243 ~  243 (391)
T 1l0q_A          243 G  243 (391)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.88  E-value=1.9e-20  Score=154.75  Aligned_cols=197  Identities=17%  Similarity=0.211  Sum_probs=131.9

Q ss_pred             ceEEcCC-CCEEEEEeCCCcEEEEeCCCCCeEEec-------CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891           2 CAKFLGD-PTKVVSGSCDRTLKIWDLRSTETKFAG-------SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~-~~~l~t~s~D~~v~lwdl~~~~~~~~~-------~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~   73 (203)
                      +++|+|+ +.+|++++.|++|++||+.+++.....       ......+.+. +++.|++++.|+.|++||+++++.+..
T Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~  289 (615)
T 1pgu_A          211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK  289 (615)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence            6889999 999999999999999999887654322       2223446777 889999999999999999998887766


Q ss_pred             eeeC-----CeEEEEEecCCCceEEEecCCceEEEEc-------------------------------------------
Q psy8891          74 IELH-----GKITSLDLSKGTETKFAGSSCNDLVTYD-------------------------------------------  105 (203)
Q Consensus        74 ~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  105 (203)
                      +..+     ..+..+.+. ++..++.+...+.+..|+                                           
T Consensus       290 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~  368 (615)
T 1pgu_A          290 WTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH  368 (615)
T ss_dssp             EECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE
T ss_pred             EcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc
Confidence            6544     334444442 333333322222211111                                           


Q ss_pred             ------------CCCCEEEEeeCCCeEEEEECC----------------------------------CCceEEEEeccce
Q psy8891         106 ------------GAGTTIISGHFDKKVRFWDFR----------------------------------AEEKVRDIELHGK  139 (203)
Q Consensus       106 ------------~~~~~l~s~s~d~~i~iWd~~----------------------------------~~~~~~~~~~~~~  139 (203)
                                  +++..|++++.|++|++||+.                                  +++.+..+.....
T Consensus       369 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (615)
T 1pgu_A          369 QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP  448 (615)
T ss_dssp             CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCC
Confidence                        225566777777777777654                                  3344444444455


Q ss_pred             EEEEEecCCcEEEEeec--Ce-----------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         140 ITSLDLSKGKYYFVFAE--GF-----------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       140 v~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +.++.++ +..++....  +.                 .....+..+.++|++++|++|+.|+.|++||+.+++++..++
T Consensus       449 ~~~~~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~  527 (615)
T 1pgu_A          449 GSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW  527 (615)
T ss_dssp             EEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS
T ss_pred             ceEEEEc-CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee
Confidence            6666665 333333221  11                 012245678899999999999999999999999999999887


Q ss_pred             c
Q psy8891         201 D  201 (203)
Q Consensus       201 ~  201 (203)
                      +
T Consensus       528 ~  528 (615)
T 1pgu_A          528 A  528 (615)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.88  E-value=1.2e-20  Score=150.93  Aligned_cols=169  Identities=20%  Similarity=0.398  Sum_probs=122.8

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE---Eeeee-CCeE
Q psy8891           6 LGDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV---RDIEL-HGKI   80 (203)
Q Consensus         6 ~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~---~~~~~-~~~v   80 (203)
                      ..++..|++|+.||+|++||+.+++..... .+...+.....+++.+++|+.|++|++||++.++..   ..+.. .+.|
T Consensus       180 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  259 (435)
T 1p22_A          180 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  259 (435)
T ss_dssp             ECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             EECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence            348899999999999999999987654321 122233444456779999999999999999887654   33333 3568


Q ss_pred             EEEEecCCCceEEEecCCceEEEEc---------------------CCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-
Q psy8891          81 TSLDLSKGTETKFAGSSCNDLVTYD---------------------GAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-  138 (203)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-  138 (203)
                      .++++  ++..++.++..+.+..|+                     .++..+++++.|++|++||+++++++..+..+. 
T Consensus       260 ~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~  337 (435)
T 1p22_A          260 NVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE  337 (435)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence            88877  445666655544443332                     246799999999999999999998887776442 


Q ss_pred             eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce---------eeeeeccC
Q psy8891         139 KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ---------VEAVLKDM  202 (203)
Q Consensus       139 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~---------~~~~~~~~  202 (203)
                      .+.++                        .  .++.+|++|+.||.|++||+.+++         ++.++.+|
T Consensus       338 ~v~~~------------------------~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h  384 (435)
T 1p22_A          338 LVRCI------------------------R--FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH  384 (435)
T ss_dssp             CEEEE------------------------E--CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC
T ss_pred             cEEEE------------------------E--ecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC
Confidence            23222                        2  267899999999999999998776         77777655

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.88  E-value=4.4e-21  Score=151.82  Aligned_cols=155  Identities=15%  Similarity=0.181  Sum_probs=115.6

Q ss_pred             eEEcCCCCE-EEEEeCCCcEEEEeCCCCCe------EE-ecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCc-----
Q psy8891           3 AKFLGDPTK-VVSGSCDRTLKIWDLRSTET------KF-AGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAE-----   68 (203)
Q Consensus         3 ~~~~~~~~~-l~t~s~D~~v~lwdl~~~~~------~~-~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~-----   68 (203)
                      ++++|+... +++++.||.|++||+.....      .+ .+......+.|+| ++++|++|+.|++|+|||+..+     
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~  119 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP  119 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence            566777654 44689999999999965311      11 1223345577888 8899999999999999999887     


Q ss_pred             --eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEE--eccceEEE
Q psy8891          69 --EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAEEKVRDI--ELHGKITS  142 (203)
Q Consensus        69 --~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~i~iWd~~~~~~~~~~--~~~~~v~~  142 (203)
                        +.+..+..| ..|.+++++                   |++ .+|++++.|++|++||+++++.+..+  ..+..   
T Consensus       120 ~~~~~~~~~~h~~~v~~~~~~-------------------p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---  177 (402)
T 2aq5_A          120 LREPVITLEGHTKRVGIVAWH-------------------PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD---  177 (402)
T ss_dssp             BCSCSEEEECCSSCEEEEEEC-------------------SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS---
T ss_pred             cCCceEEecCCCCeEEEEEEC-------------------cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC---
Confidence              344455443 456665555                   454 58999999999999999998877666  22211   


Q ss_pred             EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                                          .+..+.++|++.+|++++.|+.|++||+++++++.++
T Consensus       178 --------------------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  214 (402)
T 2aq5_A          178 --------------------TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK  214 (402)
T ss_dssp             --------------------CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             --------------------ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence                                2334556789999999999999999999999999888

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.88  E-value=1e-19  Score=145.73  Aligned_cols=192  Identities=20%  Similarity=0.335  Sum_probs=132.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-Ce
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GK   79 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~   79 (203)
                      ++.|+  +..+++|+.|++|++||+.+++...... +...+.++..+++.+++|+.|++|++||+++++.+..+..+ ..
T Consensus       164 ~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~  241 (445)
T 2ovr_B          164 SSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA  241 (445)
T ss_dssp             EEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred             EEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence            34554  6799999999999999998876533211 11223333335679999999999999999999888777655 56


Q ss_pred             EEEEEecCCCceEEEecCCceEEE---------------------EcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVT---------------------YDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG  138 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~  138 (203)
                      +.++++  ++..++.+...+.+..                     ...++..+++++.|++|++||+++++++..+..+.
T Consensus       242 v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  319 (445)
T 2ovr_B          242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ  319 (445)
T ss_dssp             EEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC
T ss_pred             EEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc
Confidence            888887  4455555544433322                     22368899999999999999999999888776553


Q ss_pred             -eEEEEEecCCcEEEEeecCe----------e---------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         139 -KITSLDLSKGKYYFVFAEGF----------K---------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       139 -~v~~~~~~~~~~~~~~~~~~----------~---------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                       .+..+.+.+.........+.          .         ....+..+.+  ++++|++|+.|+.|++||+.+++.++.
T Consensus       320 ~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~  397 (445)
T 2ovr_B          320 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRN  397 (445)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeee
Confidence             35555554432221111110          0         0112233333  678999999999999999999999988


Q ss_pred             e
Q psy8891         199 L  199 (203)
Q Consensus       199 ~  199 (203)
                      +
T Consensus       398 ~  398 (445)
T 2ovr_B          398 L  398 (445)
T ss_dssp             E
T ss_pred             e
Confidence            7

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.88  E-value=9.5e-21  Score=151.49  Aligned_cols=150  Identities=21%  Similarity=0.400  Sum_probs=110.1

Q ss_pred             CceEEcCCCC-EEEEEeCCCcEEEEeCCCCC---------eEEe-cCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCc
Q psy8891           1 MCAKFLGDPT-KVVSGSCDRTLKIWDLRSTE---------TKFA-GSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         1 ~~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~---------~~~~-~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~   68 (203)
                      .+++|+|++. .|++|+.||+|++||+....         .... +......+.|.| ++..+++++.|+.|++||++.+
T Consensus       185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred             EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            3689999998 99999999999999998622         1121 222344567888 6779999999999999999976


Q ss_pred             ---eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCC-EEEEeeCCCeEEEEECCC-CceEEEEeccceEEE
Q psy8891          69 ---EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRA-EEKVRDIELHGKITS  142 (203)
Q Consensus        69 ---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~i~iWd~~~-~~~~~~~~~~~~v~~  142 (203)
                         +.+..+..| ..|++++++|                   ++. .+++++.|++|++||+++ ..++..+..+..   
T Consensus       265 ~~~~~~~~~~~~~~~v~~i~~~p-------------------~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~---  322 (430)
T 2xyi_A          265 NTSKPSHTVDAHTAEVNCLSFNP-------------------YSEFILATGSADKTVALWDLRNLKLKLHSFESHKD---  322 (430)
T ss_dssp             CSSSCSEEEECCSSCEEEEEECS-------------------SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS---
T ss_pred             CCCcceeEeecCCCCeEEEEeCC-------------------CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC---
Confidence               344444333 4566666554                   443 788999999999999997 445555543321   


Q ss_pred             EEecCCcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEecCCCcEEEEeCCC
Q psy8891         143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~v~~wd~~~  192 (203)
                                          .+..+.++|+++ +|++++.|+.|++||+..
T Consensus       323 --------------------~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          323 --------------------EIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             --------------------CEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             --------------------CEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence                                233455667774 699999999999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.3e-21  Score=157.89  Aligned_cols=156  Identities=10%  Similarity=0.136  Sum_probs=108.9

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe-------------------------------EE--ecCcCceEEEEeCC
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET-------------------------------KF--AGSSCNDLVTYDGA   47 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-------------------------------~~--~~~~~~~~~~~~~~   47 (203)
                      .+++|+|||+++||+|.|++||  |....+.                               ..  .+......++|+|+
T Consensus        19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPd   96 (588)
T 2j04_A           19 NNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPI   96 (588)
T ss_dssp             CCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSS
T ss_pred             EEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCC
Confidence            4799999999999999999996  4322110                               00  11122445789999


Q ss_pred             CCEEEEecCCCeEEEEECCCceEEEeeeeCC-----eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEE
Q psy8891          48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHG-----KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRF  122 (203)
Q Consensus        48 ~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~i  122 (203)
                      |..|++++.||+|++||.+.  .+..+..+.     .+.+                   ++|+|+|+.|++|+.||+|++
T Consensus        97 G~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~s-------------------vafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           97 DDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHC-------------------FEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             SSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEE-------------------EEECSSSSCEEEEETTSEEEE
T ss_pred             CCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEE-------------------EEEcCCCCEEEEEcCCCEEEE
Confidence            99999999999999999543  444444111     2444                   456678889999999999999


Q ss_pred             EECCCCce-------EEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee
Q psy8891         123 WDFRAEEK-------VRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       123 Wd~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~  195 (203)
                      ||+.++..       ++.+..+..                   .+...+..++++|++  +++++.|++|++||+..++.
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~-------------------gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDA-------------------GSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCT-------------------TCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred             EECCCCccccccceeeeeeecccc-------------------cccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence            99987642       333322110                   001134566788888  88999999999999988774


Q ss_pred             ---eeeec
Q psy8891         196 ---EAVLK  200 (203)
Q Consensus       196 ---~~~~~  200 (203)
                         .++++
T Consensus       215 ~~~~~tL~  222 (588)
T 2j04_A          215 QPVSRMIQ  222 (588)
T ss_dssp             CCCEEEEE
T ss_pred             ccceeeec
Confidence               34564

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=3.5e-21  Score=152.42  Aligned_cols=165  Identities=11%  Similarity=0.115  Sum_probs=112.8

Q ss_pred             ceEEcC--------CCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCce
Q psy8891           2 CAKFLG--------DPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         2 ~~~~~~--------~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~   69 (203)
                      +++|+|        |+++|+|||.|++|||||+.+....   ..+......++|.|++. +|++|+.|++|++||+++++
T Consensus       141 ~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          141 DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred             EEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence            578887        8899999999999999999765432   23344445578888764 89999999999999998876


Q ss_pred             EEEeee--------------------------eCCeEEEEEec-CCCceEEEecCCceEEEEc-----------------
Q psy8891          70 KVRDIE--------------------------LHGKITSLDLS-KGTETKFAGSSCNDLVTYD-----------------  105 (203)
Q Consensus        70 ~~~~~~--------------------------~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------  105 (203)
                      ......                          ....+..+.+. +++..++.+...+.+..|+                 
T Consensus       221 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~  300 (393)
T 4gq1_A          221 SAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKL  300 (393)
T ss_dssp             ----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred             ccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence            433221                          11235556654 5666666655554443332                 


Q ss_pred             ------------------------C--CCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCee
Q psy8891         106 ------------------------G--AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK  159 (203)
Q Consensus       106 ------------------------~--~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  159 (203)
                                              +  ++.++++++.|++|++||+.++++......+..                    
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--------------------  360 (393)
T 4gq1_A          301 GPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--------------------  360 (393)
T ss_dssp             ---CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--------------------
T ss_pred             ccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--------------------
Confidence                                    1  334678889999999999998877655432211                    


Q ss_pred             EEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         160 VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                         .+..++|+|||++|++++.|| +.+|.+
T Consensus       361 ---~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          361 ---PIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             ---CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             ---cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence               234566778999999998766 666654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.87  E-value=1.7e-19  Score=143.51  Aligned_cols=200  Identities=14%  Similarity=0.155  Sum_probs=149.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-------c-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-------G-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-------~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~   73 (203)
                      +++|+|++..+++++.|++|++||+.+++....       . ......+.++++++.+++++.|+.|++||+++++.+..
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~  206 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT  206 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE
Confidence            678999888889999999999999998765431       1 11223467788889999999999999999999888877


Q ss_pred             eeeC-CeEEEEEecCCCceEEEec-CCce----------------------EEEEcCCCCEEEEee--------CCCeEE
Q psy8891          74 IELH-GKITSLDLSKGTETKFAGS-SCND----------------------LVTYDGAGTTIISGH--------FDKKVR  121 (203)
Q Consensus        74 ~~~~-~~v~~~~~~~~~~~~~~~~-~~~~----------------------~~~~~~~~~~l~s~s--------~d~~i~  121 (203)
                      +..+ ..+..+++++++..++... ....                      .+.|+|+|+.|++++        .|+.|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~  286 (433)
T 3bws_A          207 VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLG  286 (433)
T ss_dssp             EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence            7654 4689999999888775433 2222                      246788999999988        488999


Q ss_pred             EEECCCCceEEEEeccceEEEEEecCCc-EEEEeec--Ce---------eE------EeeeEEEEEEcCCCEEEEecC--
Q psy8891         122 FWDFRAEEKVRDIELHGKITSLDLSKGK-YYFVFAE--GF---------KV------QCDFTRAVFVVDDDYVAVGSI--  181 (203)
Q Consensus       122 iWd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~--~~---------~~------~~~~~~~~~~~~~~~l~s~s~--  181 (203)
                      +||+++++....+.....+..+.++++. .+++...  +.         ..      ...+..+.++|+++++++++.  
T Consensus       287 ~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  366 (433)
T 3bws_A          287 IYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGP  366 (433)
T ss_dssp             EEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCC
T ss_pred             EEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCC
Confidence            9999998877766555567777887764 3433321  10         00      112456778899998888876  


Q ss_pred             -------------CCcEEEEeCCCceeeeeecc
Q psy8891         182 -------------DGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       182 -------------d~~v~~wd~~~~~~~~~~~~  201 (203)
                                   ||.|++||+.+++++..++.
T Consensus       367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~  399 (433)
T 3bws_A          367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA  399 (433)
T ss_dssp             CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred             CccccccccccccceEEEEEECCCCcEEEEecC
Confidence                         57999999999999888764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.87  E-value=1.2e-20  Score=146.39  Aligned_cols=187  Identities=17%  Similarity=0.253  Sum_probs=133.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEE--eCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTY--DGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~--~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +++|+|++++|++|+.|++|++||+.+.+...  .+......+.+  .+++++|++++.|+.|++||+++++.+..+..+
T Consensus        91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  170 (368)
T 3mmy_A           91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP  170 (368)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred             EEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence            68999999999999999999999998866432  23333445667  788889999999999999999999888888877


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEE-------------------------cCCCC----EEEEeeCCCeEEEEECCCC
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTY-------------------------DGAGT----TIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~----~l~s~s~d~~i~iWd~~~~  128 (203)
                      ..+.++++...  .++.+.....+..|                         .++..    .+++++.|+.|++||++..
T Consensus       171 ~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  248 (368)
T 3mmy_A          171 ERCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP  248 (368)
T ss_dssp             SCEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred             CCceEEEecCC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence            77777766543  22222222222222                         22222    2999999999999999877


Q ss_pred             ---ceEEEEeccc-------------eEEEEEecCCcEEEEeec--Ce----------e------EEeeeEEEEEEcCCC
Q psy8891         129 ---EKVRDIELHG-------------KITSLDLSKGKYYFVFAE--GF----------K------VQCDFTRAVFVVDDD  174 (203)
Q Consensus       129 ---~~~~~~~~~~-------------~v~~~~~~~~~~~~~~~~--~~----------~------~~~~~~~~~~~~~~~  174 (203)
                         .....+..+.             .+.++.++++..+++...  +.          .      ....+..+.|+|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  328 (368)
T 3mmy_A          249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGN  328 (368)
T ss_dssp             CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSS
T ss_pred             CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCC
Confidence               4455555554             488888888754444332  10          0      122456788999999


Q ss_pred             EEEEecCCCcEEEEeC
Q psy8891         175 YVAVGSIDGNIYVWDC  190 (203)
Q Consensus       175 ~l~s~s~d~~v~~wd~  190 (203)
                      +|++|+.|+..+.|+.
T Consensus       329 ~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          329 IFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CEEEEECCCSTTCGGG
T ss_pred             eEEEEecccccccccc
Confidence            9999999886666554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.87  E-value=3.1e-20  Score=148.16  Aligned_cols=187  Identities=12%  Similarity=0.246  Sum_probs=128.0

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCC-eEE----------ecCcCceEEEEeCCC-CEEEEecCCCeEEEEECCCc
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE-TKF----------AGSSCNDLVTYDGAG-TTIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~-~~~----------~~~~~~~~~~~~~~~-~~l~s~~~D~~i~vwd~~~~   68 (203)
                      .+++|+|+++.|++| .|++|++||++... ...          .+......+.|+|++ +.|++|+.|++|++||++.+
T Consensus       181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  259 (447)
T 3dw8_B          181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS  259 (447)
T ss_dssp             CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence            368999999999999 79999999998422 211          112224557889988 89999999999999999988


Q ss_pred             eE----EEeeeeCC-------------eEEEEEecCCCceEEEecCCceE------------------------------
Q psy8891          69 EK----VRDIELHG-------------KITSLDLSKGTETKFAGSSCNDL------------------------------  101 (203)
Q Consensus        69 ~~----~~~~~~~~-------------~v~~~~~~~~~~~~~~~~~~~~~------------------------------  101 (203)
                      +.    ...+..+.             .|.+++++|++..++.+.. ..+                              
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (447)
T 3dw8_B          260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE  338 (447)
T ss_dssp             SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred             ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence            75    56666553             7999999999887776543 211                              


Q ss_pred             ---------EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEee---------cCeeEEe
Q psy8891         102 ---------VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFA---------EGFKVQC  162 (203)
Q Consensus       102 ---------~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~---------~~~~~~~  162 (203)
                               +.|+|++++|++++.|++|++||+.+++.+. ++.+. .................         .......
T Consensus       339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (447)
T 3dw8_B          339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK  417 (447)
T ss_dssp             TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS
T ss_pred             ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCC
Confidence                     5789999999999999999999999887652 22211 00000000000000000         0001122


Q ss_pred             eeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      .+..+.++|++.+|++++.++ +++|..+
T Consensus       418 ~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          418 KILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             ceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            456688999999999998876 8888644

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.86  E-value=1.4e-18  Score=138.26  Aligned_cols=191  Identities=16%  Similarity=0.214  Sum_probs=143.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +++|++++..+++++.|++|++||+++.+...  . .......+.++|+++.+ ++++.|+.|++||+++++.+..+..+
T Consensus       174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  253 (433)
T 3bws_A          174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI  253 (433)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred             EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC
Confidence            57889999999999999999999998866432  2 22234557889999877 56668999999999999988888878


Q ss_pred             CeEEEEEecCCCceEEEecC--------Cce----------------------EEEEcCCCCEE-EEeeCCCeEEEEECC
Q psy8891          78 GKITSLDLSKGTETKFAGSS--------CND----------------------LVTYDGAGTTI-ISGHFDKKVRFWDFR  126 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~--------~~~----------------------~~~~~~~~~~l-~s~s~d~~i~iWd~~  126 (203)
                      +.+..++++|++..++.+..        ...                      .+.|+|+++.+ ++++.|++|++||+.
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence            88999999998877665441        111                      24678888654 666899999999999


Q ss_pred             CCceEEEEeccceEEEEEecCCcE-EEEeecC----------------eeE---------------EeeeEEEEEEcCCC
Q psy8891         127 AEEKVRDIELHGKITSLDLSKGKY-YFVFAEG----------------FKV---------------QCDFTRAVFVVDDD  174 (203)
Q Consensus       127 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~----------------~~~---------------~~~~~~~~~~~~~~  174 (203)
                      +++....+.....+..+.++++.. +++....                ...               ...+..+.++|+++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  413 (433)
T 3bws_A          334 EKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNR  413 (433)
T ss_dssp             TTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSC
T ss_pred             CCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCC
Confidence            998888887777788888887653 3332221                110               01234567889999


Q ss_pred             EEEEecC-CCcEEEEeCCC
Q psy8891         175 YVAVGSI-DGNIYVWDCNT  192 (203)
Q Consensus       175 ~l~s~s~-d~~v~~wd~~~  192 (203)
                      +|++++. |++|++|+++.
T Consensus       414 ~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          414 YLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEEETTTTEEEEEEETT
T ss_pred             EEEEEECCCCeEEEEEecC
Confidence            9988765 99999999863

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.86  E-value=8.1e-20  Score=146.09  Aligned_cols=161  Identities=14%  Similarity=0.234  Sum_probs=114.1

Q ss_pred             CceEEcCC-CCEEEEEeCCCcEEEEeCCC----------CCe--EEe-cCcCceEEEEeCCCC-EEEEecCCCeEEEEEC
Q psy8891           1 MCAKFLGD-PTKVVSGSCDRTLKIWDLRS----------TET--KFA-GSSCNDLVTYDGAGT-TIISGHFDKKVRFWDF   65 (203)
Q Consensus         1 ~~~~~~~~-~~~l~t~s~D~~v~lwdl~~----------~~~--~~~-~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~   65 (203)
                      .+++|+|+ +..|++++.||+|++||+..          ...  .+. +......+.|.|++. .|++|+.||+|++||+
T Consensus       132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  211 (430)
T 2xyi_A          132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI  211 (430)
T ss_dssp             SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEET
T ss_pred             EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeC
Confidence            36899997 67999999999999999975          121  122 222234578888887 9999999999999999


Q ss_pred             CCceE-------EEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC---ceEEEE
Q psy8891          66 RAEEK-------VRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE---EKVRDI  134 (203)
Q Consensus        66 ~~~~~-------~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~---~~~~~~  134 (203)
                      ..+..       ...+..| ..|.+++++|+                  ++..+++++.|++|++||++++   .++..+
T Consensus       212 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~------------------~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~  273 (430)
T 2xyi_A          212 NATPKEHRVIDAKNIFTGHTAVVEDVAWHLL------------------HESLFGSVADDQKLMIWDTRNNNTSKPSHTV  273 (430)
T ss_dssp             TSCCBGGGEEECSEEECCCSSCEEEEEECSS------------------CTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred             CCCCCCCceeccceeecCCCCCEeeeEEeCC------------------CCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence            87422       1222222 34555555442                  4568999999999999999976   344444


Q ss_pred             eccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEecCCCcEEEEeCCC-ceeeeeeccC
Q psy8891         135 ELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGSIDGNIYVWDCNT-EQVEAVLKDM  202 (203)
Q Consensus       135 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~v~~wd~~~-~~~~~~~~~~  202 (203)
                      ..+.                       ..+..+.|+|++. +|++|+.|++|++||+++ ++++.++++|
T Consensus       274 ~~~~-----------------------~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h  320 (430)
T 2xyi_A          274 DAHT-----------------------AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH  320 (430)
T ss_dssp             ECCS-----------------------SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred             ecCC-----------------------CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence            3221                       1234556677776 689999999999999987 6777777654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.85  E-value=2.1e-20  Score=146.04  Aligned_cols=169  Identities=11%  Similarity=0.121  Sum_probs=109.7

Q ss_pred             eEEcCCCCEEEE--EeCCCcEEEEeCCCCC------------------eEEec-CcCceEEEEeCCCCEEEEecCCCe-E
Q psy8891           3 AKFLGDPTKVVS--GSCDRTLKIWDLRSTE------------------TKFAG-SSCNDLVTYDGAGTTIISGHFDKK-V   60 (203)
Q Consensus         3 ~~~~~~~~~l~t--~s~D~~v~lwdl~~~~------------------~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~-i   60 (203)
                      +++++  ..++.  |+.||+|++||+.+..                  ..+.+ ......+.++|++++|+||+.|++ |
T Consensus       143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII  220 (355)
T ss_dssp             EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred             EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence            34555  44554  6899999999998643                  12222 233456789999999999999998 9


Q ss_pred             EEEECCCceEEEeee---eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891          61 RFWDFRAEEKVRDIE---LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        61 ~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      +|||+++++++.++.   ..+.|.+++|+                   |+|++|++++.|++|++||++.+...+...+.
T Consensus       221 ~iwd~~~~~~~~~~~~g~h~~~v~~~~~s-------------------~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~  281 (355)
T 3vu4_A          221 RVFKTEDGVLVREFRRGLDRADVVDMKWS-------------------TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK  281 (355)
T ss_dssp             EEEETTTCCEEEEEECTTCCSCEEEEEEC-------------------TTSCEEEEEETTCEEEEEESSCCSCCCSEETT
T ss_pred             EEEECCCCcEEEEEEcCCCCCcEEEEEEC-------------------CCCCEEEEEECCCEEEEEEccCCCCccccccc
Confidence            999999999988887   34567766554                   56679999999999999999865432222211


Q ss_pred             ceEEEEEecCC--cEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         138 GKITSLDLSKG--KYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       138 ~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      ..+....+...  ...+......  ......++++++++++++++.||.+++|++..++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          282 GWINMKYFQSEWSLCNFKLSVDK--HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             TTEECCCCCCSSCSEEEECCCCT--TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             ceeeccccccccceeEEEeccCC--CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            11000000000  0000000000  0011346788999999999999999999987544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.85  E-value=5.2e-19  Score=150.92  Aligned_cols=195  Identities=14%  Similarity=0.216  Sum_probs=145.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc-eEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~-~~~~~~~~~   77 (203)
                      +++|+|++++|++|+.|++|++||+.+++...  . +......+.|+|+++.|++++.|++|++||++.+ .....+..+
T Consensus        60 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  139 (814)
T 3mkq_A           60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH  139 (814)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence            68999999999999999999999998876532  2 2333456789999999999999999999999887 555666544


Q ss_pred             -CeEEEEEecC-CCceEEEecCCce------------------------EEEEcC--CCCEEEEeeCCCeEEEEECCCCc
Q psy8891          78 -GKITSLDLSK-GTETKFAGSSCND------------------------LVTYDG--AGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        78 -~~v~~~~~~~-~~~~~~~~~~~~~------------------------~~~~~~--~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                       ..|.+++++| ++..++.+.....                        .+.|+|  ++..|++++.|++|++||+++++
T Consensus       140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  219 (814)
T 3mkq_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (814)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred             CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence             5799999999 6666665544332                        356777  89999999999999999999998


Q ss_pred             eEEEEecc-ceEEEEEecCCcEEEEeec--Ce-eE---------------EeeeEEEEEEcCCCE-EEEecCCCcEEEEe
Q psy8891         130 KVRDIELH-GKITSLDLSKGKYYFVFAE--GF-KV---------------QCDFTRAVFVVDDDY-VAVGSIDGNIYVWD  189 (203)
Q Consensus       130 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~--~~-~~---------------~~~~~~~~~~~~~~~-l~s~s~d~~v~~wd  189 (203)
                      ++..+..+ ..+..+.++++...++...  +. .+               ...+..+.++|++.. +++++.|+.+.+|+
T Consensus       220 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (814)
T 3mkq_A          220 CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS  299 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence            88888755 4688888888765444332  11 00               113456677888763 34555577799999


Q ss_pred             CCCceee
Q psy8891         190 CNTEQVE  196 (203)
Q Consensus       190 ~~~~~~~  196 (203)
                      +..+...
T Consensus       300 ~~~~~~~  306 (814)
T 3mkq_A          300 LGNDEPT  306 (814)
T ss_dssp             CSCCSCC
T ss_pred             cCCCCce
Confidence            8755443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.84  E-value=2e-18  Score=132.89  Aligned_cols=160  Identities=9%  Similarity=0.185  Sum_probs=109.6

Q ss_pred             EEEeCC----CCEEEEecCCCeEEEEECCCceEEEee-e-eCCeEEEEEecCCCceEEE---ecCCceEEEEcC---CCC
Q psy8891          42 VTYDGA----GTTIISGHFDKKVRFWDFRAEEKVRDI-E-LHGKITSLDLSKGTETKFA---GSSCNDLVTYDG---AGT  109 (203)
Q Consensus        42 ~~~~~~----~~~l~s~~~D~~i~vwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~  109 (203)
                      ++++|+    ++.+++++.+  +++|++.+++.+.+. . .++.|..+++++++..+..   ......++.|++   ++.
T Consensus       117 la~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~  194 (356)
T 2w18_A          117 LFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE  194 (356)
T ss_dssp             ECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred             EEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence            456788    8899998844  889999888877663 2 3577999999998765432   344456777887   789


Q ss_pred             EEEEeeCCCeEEEEECCCCceEEEEeccc----eEEEEEecCCcEEEEeec----------C---eeEEe------eeEE
Q psy8891         110 TIISGHFDKKVRFWDFRAEEKVRDIELHG----KITSLDLSKGKYYFVFAE----------G---FKVQC------DFTR  166 (203)
Q Consensus       110 ~l~s~s~d~~i~iWd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~----------~---~~~~~------~~~~  166 (203)
                      .|++++.|++||+||+.++++++++..+.    .+..+.++++..+++...          +   ..+..      ....
T Consensus       195 ~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~  274 (356)
T 2w18_A          195 ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG  274 (356)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred             eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence            99999999999999999999999987432    245556666655543211          0   00000      0000


Q ss_pred             E-EE-EcCC------------CEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         167 A-VF-VVDD------------DYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       167 ~-~~-~~~~------------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                      . .+ .|++            .++++|+.|++|+|||+.+|+++++|++|+
T Consensus       275 v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~  325 (356)
T 2w18_A          275 VMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVS  325 (356)
T ss_dssp             EEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC-
T ss_pred             EEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCC
Confidence            0 00 0333            368999999999999999999999998874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.83  E-value=8.9e-19  Score=134.94  Aligned_cols=183  Identities=15%  Similarity=0.199  Sum_probs=133.8

Q ss_pred             ceEEcCCCC-EEEEEeCCCcEEEEeC-CCCCeEEe----cCcCceEEEEeCCCCEEEEecCCCeEEEEECCC--------
Q psy8891           2 CAKFLGDPT-KVVSGSCDRTLKIWDL-RSTETKFA----GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA--------   67 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~s~D~~v~lwdl-~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~--------   67 (203)
                      +++|+|+++ .|++|+.|++|++||+ .+.+....    +......+.+.+ ++.|++++.|+.|++||++.        
T Consensus        61 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~  139 (342)
T 1yfq_A           61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             EEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccc
Confidence            688999999 9999999999999999 87664322    222234567888 89999999999999999987        


Q ss_pred             -ceEEEeeeeCCeEEEEEecCCCceEEEecCC--------------------------ceEEEEcC-CCCEEEEeeCCCe
Q psy8891          68 -EEKVRDIELHGKITSLDLSKGTETKFAGSSC--------------------------NDLVTYDG-AGTTIISGHFDKK  119 (203)
Q Consensus        68 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~-~~~~l~s~s~d~~  119 (203)
                       ++.+..+...+.+.+++++++.  ++.+...                          ...+.|+| ++..+++++.|+.
T Consensus       140 ~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          140 KNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             EESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             cCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence             6666666666778888888765  3322111                          12357899 9999999999999


Q ss_pred             EEEEECCCC------ceEEEEeccc----------eEEEEEecCCcEEEEeec--Ce----------e------E-Eeee
Q psy8891         120 VRFWDFRAE------EKVRDIELHG----------KITSLDLSKGKYYFVFAE--GF----------K------V-QCDF  164 (203)
Q Consensus       120 i~iWd~~~~------~~~~~~~~~~----------~v~~~~~~~~~~~~~~~~--~~----------~------~-~~~~  164 (203)
                      |++||++..      +....+..+.          .+.++.++++..+++...  +.          .      . ...+
T Consensus       218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v  297 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV  297 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred             EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCc
Confidence            999999876      6666776552          688888887654443321  10          0      0 1123


Q ss_pred             EEEEEEcCCCEEEEecCCCc-EEEEe
Q psy8891         165 TRAVFVVDDDYVAVGSIDGN-IYVWD  189 (203)
Q Consensus       165 ~~~~~~~~~~~l~s~s~d~~-v~~wd  189 (203)
                      ..+.  |++++|++|+.|++ .+.|.
T Consensus       298 ~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          298 VKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             eEec--CCCCeEEEEecCCccccccc
Confidence            3333  89999999999999 55555

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.82  E-value=2.7e-18  Score=132.03  Aligned_cols=190  Identities=18%  Similarity=0.224  Sum_probs=119.7

Q ss_pred             EEEeCCCcEEEEeC--CCCCeE----Ee-cCcCceEEEEeCC-CCEEEEecCCCeEEEEECCCce-----EEEeeeeC-C
Q psy8891          13 VSGSCDRTLKIWDL--RSTETK----FA-GSSCNDLVTYDGA-GTTIISGHFDKKVRFWDFRAEE-----KVRDIELH-G   78 (203)
Q Consensus        13 ~t~s~D~~v~lwdl--~~~~~~----~~-~~~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~~~~-----~~~~~~~~-~   78 (203)
                      .||-..|+..+|-.  ...+..    +. +...+..++++|+ +++|+|||.|++|+|||+...+     +.+.+..| .
T Consensus         8 ~~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~   87 (340)
T 4aow_A            8 SSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH   87 (340)
T ss_dssp             ------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred             ccccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence            45555566555533  222211    22 2333556788887 6799999999999999997653     34455544 6


Q ss_pred             eEEEEEecCCCceEEEecCCceE-----------------------EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDL-----------------------VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                      .|.++.++|++..++.+.....+                       ..+.+++..|++++.|+.+++||+..........
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~  167 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD  167 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence            79999999999988877665443                       3456778899999999999999987654332211


Q ss_pred             -c-cceEEEEEecCC--cEEEEeec------------Cee------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         136 -L-HGKITSLDLSKG--KYYFVFAE------------GFK------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       136 -~-~~~v~~~~~~~~--~~~~~~~~------------~~~------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                       . ...+..+.+++.  ..+++...            +..      ....+..+.|+|++++|++|+.|++|++||++++
T Consensus       168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence             1 133555555432  22222111            000      1124567789999999999999999999999999


Q ss_pred             eeeeeeccC
Q psy8891         194 QVEAVLKDM  202 (203)
Q Consensus       194 ~~~~~~~~~  202 (203)
                      +++..++.+
T Consensus       248 ~~~~~~~~~  256 (340)
T 4aow_A          248 KHLYTLDGG  256 (340)
T ss_dssp             EEEEEEECS
T ss_pred             ceeeeecCC
Confidence            999887654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=1.1e-18  Score=140.03  Aligned_cols=156  Identities=13%  Similarity=0.124  Sum_probs=109.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCC-----------CeE-------EecCcCceEEEEeCCCCEEE----EecCCCe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRST-----------ETK-------FAGSSCNDLVTYDGAGTTII----SGHFDKK   59 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~-----------~~~-------~~~~~~~~~~~~~~~~~~l~----s~~~D~~   59 (203)
                      ++++++++..+++++.|+ +++|+....           ...       .........+.|++++++|+    +|+.|++
T Consensus        41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~  119 (434)
T 2oit_A           41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSI  119 (434)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEE
T ss_pred             EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCce
Confidence            568899999999999988 999875310           000       11112245578999999999    8999999


Q ss_pred             EEEEECCCc--------eE---EEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          60 VRFWDFRAE--------EK---VRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        60 i~vwd~~~~--------~~---~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                      |+|||+++.        +.   +..+..| ..|.+++|+|+                  ++.+|++++.|++|++||+++
T Consensus       120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~------------------~~~~las~s~Dg~v~iwD~~~  181 (434)
T 2oit_A          120 IAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT------------------VPSMVAVCLADGSIAVLQVTE  181 (434)
T ss_dssp             EEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS------------------CTTEEEEEETTSCEEEEEESS
T ss_pred             EEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC------------------CCCEEEEEECCCeEEEEEcCC
Confidence            999998764        11   2222222 45666655543                  156899999999999999998


Q ss_pred             CceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         128 EEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +........+.                       ..+..++++|++++|++|+.|++|++||.+ ++..++++
T Consensus       182 ~~~~~~~~~~~-----------------------~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~  230 (434)
T 2oit_A          182 TVKVCATLPST-----------------------VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP  230 (434)
T ss_dssp             SEEEEEEECGG-----------------------GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred             CcceeeccCCC-----------------------CceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence            75433322211                       123456677899999999999999999998 66665554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.81  E-value=7e-18  Score=128.48  Aligned_cols=147  Identities=18%  Similarity=0.296  Sum_probs=102.6

Q ss_pred             ceEEEEeCCCCEEEEecCCCeEEEEECCCc--eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee
Q psy8891          39 NDLVTYDGAGTTIISGHFDKKVRFWDFRAE--EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH  115 (203)
Q Consensus        39 ~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~--~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  115 (203)
                      ...+++++++++|+||+.|++|+|||+..+  +.+.++..| ++|.+++|+++                 .++++|++++
T Consensus        12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~-----------------~~g~~l~s~s   74 (297)
T 2pm7_B           12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP-----------------KFGTILASCS   74 (297)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG-----------------GGCSEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC-----------------CcCCEEEEEc
Confidence            345788999999999999999999999753  455666655 56887776542                 1256899999


Q ss_pred             CCCeEEEEECCCCc--eEEEEecc-ceEEEEEecCC--cEEEEee-cCee-------------------EEeeeEEEEEE
Q psy8891         116 FDKKVRFWDFRAEE--KVRDIELH-GKITSLDLSKG--KYYFVFA-EGFK-------------------VQCDFTRAVFV  170 (203)
Q Consensus       116 ~d~~i~iWd~~~~~--~~~~~~~~-~~v~~~~~~~~--~~~~~~~-~~~~-------------------~~~~~~~~~~~  170 (203)
                      .|++|++||+++++  .+..+..+ ..|.++.+++.  ..+++.. ....                   ....+..+.++
T Consensus        75 ~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~  154 (297)
T 2pm7_B           75 YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  154 (297)
T ss_dssp             TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEEC
T ss_pred             CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeec
Confidence            99999999998764  34444433 45888888764  2222221 1100                   01124456677


Q ss_pred             cC-------------CCEEEEecCCCcEEEEeCCCce----eeeeeccC
Q psy8891         171 VD-------------DDYVAVGSIDGNIYVWDCNTEQ----VEAVLKDM  202 (203)
Q Consensus       171 ~~-------------~~~l~s~s~d~~v~~wd~~~~~----~~~~~~~~  202 (203)
                      |+             +++|++|+.|++|++||+++++    ++.++++|
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H  203 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence            75             5799999999999999998765    66677765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.80  E-value=2.6e-17  Score=131.18  Aligned_cols=174  Identities=10%  Similarity=0.028  Sum_probs=120.6

Q ss_pred             ceEEcCCCCEEEEEeCCC---cEEEEeCCCCCeEE-e-cCcCceEEEEeCCCCEEE-EecCCCe--EEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDR---TLKIWDLRSTETKF-A-GSSCNDLVTYDGAGTTII-SGHFDKK--VRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~---~v~lwdl~~~~~~~-~-~~~~~~~~~~~~~~~~l~-s~~~D~~--i~vwd~~~~~~~~~   73 (203)
                      +++|+|||++|++++.|+   +|++||+.+++... . .......+.|+|+++.|+ +++.|+.  |++||+++++....
T Consensus       183 ~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l  262 (415)
T 2hqs_A          183 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV  262 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC
Confidence            578999999999999886   99999999876532 2 222345578999999777 7776664  99999988776433


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCC-c--e----------------------EEEEcCCCCEEEEeeCC---CeEEEEEC
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSC-N--D----------------------LVTYDGAGTTIISGHFD---KKVRFWDF  125 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~-~--~----------------------~~~~~~~~~~l~s~s~d---~~i~iWd~  125 (203)
                      ....+.+..++|+|++..++..+.. .  .                      ...|+|+|++|++++.+   ..|++||+
T Consensus       263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence            3334568888888887765543321 0  1                      14677888888777764   57888888


Q ss_pred             CCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC---cEEEEeCCCceeeeeecc
Q psy8891         126 RAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG---NIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       126 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~v~~wd~~~~~~~~~~~~  201 (203)
                      .+++.. .+..+.                        ......++|++++|++++.|+   .|++||+. ++.++.+.+
T Consensus       343 ~~~~~~-~l~~~~------------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~  395 (415)
T 2hqs_A          343 ATGGVQ-VLSSTF------------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA  395 (415)
T ss_dssp             TTCCEE-ECCCSS------------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCC
T ss_pred             CCCCEE-EecCCC------------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeC
Confidence            776542 221111                        123456778999999988877   79999987 455555553

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.78  E-value=2.9e-17  Score=125.86  Aligned_cols=156  Identities=15%  Similarity=0.152  Sum_probs=109.8

Q ss_pred             CceEEEEeCCCCEEEEecCCCeEEEEECCCce----EEEeeeeC-CeEEEEEecC--CCceEEEecCCce----------
Q psy8891          38 CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE----KVRDIELH-GKITSLDLSK--GTETKFAGSSCND----------  100 (203)
Q Consensus        38 ~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~----~~~~~~~~-~~v~~~~~~~--~~~~~~~~~~~~~----------  100 (203)
                      ....+.|+|++++|++|+.|++|++||+..+.    ....+..| +.|.++++++  ++..++.+...+.          
T Consensus        13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~   92 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ   92 (351)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence            34567889999999999999999999998763    44555544 6799999998  4666665443221          


Q ss_pred             ----------------------EEEEcCC--CCEEEEeeCCCeEEEEECCCCceEEEEec--------------cceEEE
Q psy8891         101 ----------------------LVTYDGA--GTTIISGHFDKKVRFWDFRAEEKVRDIEL--------------HGKITS  142 (203)
Q Consensus       101 ----------------------~~~~~~~--~~~l~s~s~d~~i~iWd~~~~~~~~~~~~--------------~~~v~~  142 (203)
                                            .+.|+|+  +.+|++++.|++|++||+++++.+..+..              ...+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (351)
T 3f3f_A           93 EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC  172 (351)
T ss_dssp             CTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred             ccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence                                  2467888  99999999999999999988765433321              123555


Q ss_pred             EEecCC---cEEEEee-cC-----------e--------eEEeeeEEEEEEcCC----CEEEEecCCCcEEEEeCCCc
Q psy8891         143 LDLSKG---KYYFVFA-EG-----------F--------KVQCDFTRAVFVVDD----DYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       143 ~~~~~~---~~~~~~~-~~-----------~--------~~~~~~~~~~~~~~~----~~l~s~s~d~~v~~wd~~~~  193 (203)
                      +.+++.   ...++.. ..           .        .....+..+.++|++    .+|++|+.|+.|++||++++
T Consensus       173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            666553   2222211 10           0        012245678899998    79999999999999999875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.78  E-value=9.8e-17  Score=132.04  Aligned_cols=179  Identities=12%  Similarity=0.109  Sum_probs=130.1

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEEC--CCceEEEeeeeCCe
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF--RAEEKVRDIELHGK   79 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~--~~~~~~~~~~~~~~   79 (203)
                      .|+|++..+++++.|++|++||..+.+...  ........+.++|++++|++++.|++|++||+  .+++.+.++.....
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~  223 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE  223 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC
Confidence            478889999999999999999999876532  21222345779999999999999999999999  78877777765555


Q ss_pred             EEEEEecCCCceEEEecCCceEEEEcC----CCCEEEEeeC-CCeEEEEECCCCceEEEEeccc------------eEEE
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVTYDG----AGTTIISGHF-DKKVRFWDFRAEEKVRDIELHG------------KITS  142 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~s~s~-d~~i~iWd~~~~~~~~~~~~~~------------~v~~  142 (203)
                      +..++                   |+|    +|++|+++++ +++|.+||..++++++.+...+            .+..
T Consensus       224 p~~va-------------------~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~  284 (543)
T 1nir_A          224 ARSVE-------------------SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  284 (543)
T ss_dssp             EEEEE-------------------ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             cceEE-------------------eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence            55554                   455    6678888874 8999999999999988876532            4666


Q ss_pred             EEecCC-cEEEEeecC--eeE----------E-------eeeEEEEEEcCCCEEEEe-cCCCcEEEEeCCCceeeeeecc
Q psy8891         143 LDLSKG-KYYFVFAEG--FKV----------Q-------CDFTRAVFVVDDDYVAVG-SIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       143 ~~~~~~-~~~~~~~~~--~~~----------~-------~~~~~~~~~~~~~~l~s~-s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      +.+++. ..+++...+  ...          .       .......|+|++++|+++ ..+++|.+||+.+++++++++.
T Consensus       285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~  364 (543)
T 1nir_A          285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  364 (543)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence            666653 333322111  000          0       012235788999986655 5689999999999999998863

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=5.8e-18  Score=135.80  Aligned_cols=114  Identities=11%  Similarity=0.080  Sum_probs=84.7

Q ss_pred             ceEEcCCCCEEE----EEeCCCcEEEEeCCCC--------Ce---EEe---cCcCceEEEEeCC-CCEEEEecCCCeEEE
Q psy8891           2 CAKFLGDPTKVV----SGSCDRTLKIWDLRST--------ET---KFA---GSSCNDLVTYDGA-GTTIISGHFDKKVRF   62 (203)
Q Consensus         2 ~~~~~~~~~~l~----t~s~D~~v~lwdl~~~--------~~---~~~---~~~~~~~~~~~~~-~~~l~s~~~D~~i~v   62 (203)
                      +++|+|++++|+    ||+.|++|++||+.+.        +.   ...   +......+.|+|+ +++|++++.|++|++
T Consensus        97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i  176 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV  176 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEE
Confidence            689999999999    8999999999998643        11   111   1223455788887 789999999999999


Q ss_pred             EECCCceEEEeeee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q psy8891          63 WDFRAEEKVRDIEL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE  135 (203)
Q Consensus        63 wd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~  135 (203)
                      ||++++........ ...|.++                   +|+|+|++|++++.|++|++||++ ++....+.
T Consensus       177 wD~~~~~~~~~~~~~~~~v~~v-------------------~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~  230 (434)
T 2oit_A          177 LQVTETVKVCATLPSTVAVTSV-------------------CWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP  230 (434)
T ss_dssp             EEESSSEEEEEEECGGGCEEEE-------------------EECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred             EEcCCCcceeeccCCCCceeEE-------------------EEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence            99998865433332 2345554                   456677799999999999999998 55554443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.76  E-value=4.2e-16  Score=128.25  Aligned_cols=181  Identities=10%  Similarity=0.047  Sum_probs=126.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeC--CCCCeEE--ecCcCceEEEEeC----CCCEEEEec-CCCeEEEEECCCceEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDL--RSTETKF--AGSSCNDLVTYDG----AGTTIISGH-FDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl--~~~~~~~--~~~~~~~~~~~~~----~~~~l~s~~-~D~~i~vwd~~~~~~~~   72 (203)
                      +++|+||+++|++++.|++|++||+  .+.+...  ........++++|    ++++|++++ .+++|.|||..+.++++
T Consensus       183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~  262 (543)
T 1nir_A          183 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ  262 (543)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE
T ss_pred             eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce
Confidence            4789999999999999999999999  6654322  2222224467899    999999988 58999999999998887


Q ss_pred             eeeeC------------CeEEEEEecCCCceEEEec-CC------------------------ceEEEEcCCCCEEEEe-
Q psy8891          73 DIELH------------GKITSLDLSKGTETKFAGS-SC------------------------NDLVTYDGAGTTIISG-  114 (203)
Q Consensus        73 ~~~~~------------~~v~~~~~~~~~~~~~~~~-~~------------------------~~~~~~~~~~~~l~s~-  114 (203)
                      .+..+            ..+..+.+++++..++... ..                        ..-+.|+|+|++++++ 
T Consensus       263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~  342 (543)
T 1nir_A          263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAA  342 (543)
T ss_dssp             EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEE
T ss_pred             eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEe
Confidence            77542            1577788887655433211 00                        0125789999977655 


Q ss_pred             eCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcC-CCEEEEec-CCCcEEEEeCCC
Q psy8891         115 HFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVD-DDYVAVGS-IDGNIYVWDCNT  192 (203)
Q Consensus       115 s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s-~d~~v~~wd~~~  192 (203)
                      ..+++|++||..+++++..+......     +++.              . ...+.|+ +..++++. .|++|.+||+.+
T Consensus       343 ~~~~~v~v~D~~tg~l~~~i~~g~~p-----h~g~--------------g-~~~~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          343 NNSNKVAVIDSKDRRLSALVDVGKTP-----HPGR--------------G-ANFVHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             GGGTEEEEEETTTTEEEEEEECSSSB-----CCTT--------------C-EEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cCCCeEEEEECCCCeEEEeeccCCCC-----CCCC--------------C-cccCCCCCccEEEeccCCCceEEEEEeCC
Confidence            45889999999998877665431100     0000              0 0113466 45667775 689999999998


Q ss_pred             -------ceeeeeeccC
Q psy8891         193 -------EQVEAVLKDM  202 (203)
Q Consensus       193 -------~~~~~~~~~~  202 (203)
                             .++++++++|
T Consensus       403 ~~~~~~~~~~v~~l~~~  419 (543)
T 1nir_A          403 KNHPQYAWKKVAELQGQ  419 (543)
T ss_dssp             TTCTTTBTSEEEEEECS
T ss_pred             CCCchhcCeEEEEEEcC
Confidence                   8999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.75  E-value=2.8e-17  Score=126.23  Aligned_cols=140  Identities=13%  Similarity=0.187  Sum_probs=97.2

Q ss_pred             CceEEcCC--CCEEEEEeCCCcEEEEeCCCCCeE-E----ec-CcCceEEEEeCC-----------------CCEEEEec
Q psy8891           1 MCAKFLGD--PTKVVSGSCDRTLKIWDLRSTETK-F----AG-SSCNDLVTYDGA-----------------GTTIISGH   55 (203)
Q Consensus         1 ~~~~~~~~--~~~l~t~s~D~~v~lwdl~~~~~~-~----~~-~~~~~~~~~~~~-----------------~~~l~s~~   55 (203)
                      .+++|+|+  +..|+||+.|++|++||++..... .    .. ......+.|.|+                 +++|++|+
T Consensus       107 ~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs  186 (316)
T 3bg1_A          107 NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG  186 (316)
T ss_dssp             CEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB
T ss_pred             EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec
Confidence            36899998  789999999999999999864311 1    11 111233556665                 46899999


Q ss_pred             CCCeEEEEECCCc---eEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc--
Q psy8891          56 FDKKVRFWDFRAE---EKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE--  129 (203)
Q Consensus        56 ~D~~i~vwd~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~--  129 (203)
                      .|++|++||++.+   +.+..+..| +.|.+++++|+..               .++..|++++.|++|++||+++..  
T Consensus       187 ~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~---------------~~~~~las~s~D~~v~iw~~~~~~~~  251 (316)
T 3bg1_A          187 CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG---------------LPTSTIASCSQDGRVFIWTCDDASSN  251 (316)
T ss_dssp             TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS---------------CSCCEEEEEETTCEEEEEECSSTTCC
T ss_pred             CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC---------------CCCceEEEEcCCCeEEEEEccCcccc
Confidence            9999999999754   345556554 5688888776431               123689999999999999987621  


Q ss_pred             --eEEEEe-ccceEEEEEecCCcEEEEee
Q psy8891         130 --KVRDIE-LHGKITSLDLSKGKYYFVFA  155 (203)
Q Consensus       130 --~~~~~~-~~~~v~~~~~~~~~~~~~~~  155 (203)
                        ....+. ....+.++.++++...++..
T Consensus       252 ~~~~~~~~~~~~~v~~v~~sp~g~~las~  280 (316)
T 3bg1_A          252 TWSPKLLHKFNDVVWHVSWSITANILAVS  280 (316)
T ss_dssp             CCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred             chhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence              112222 24568899998876655543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.75  E-value=8.9e-17  Score=123.23  Aligned_cols=172  Identities=11%  Similarity=0.131  Sum_probs=116.9

Q ss_pred             ceEEcCCCCEEEEEe------------CCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891           2 CAKFLGDPTKVVSGS------------CDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s------------~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      +++|+||++.|++++            .++.|++||+.+.+..  .........+.++|+++.|+.+  ++.|++||+.+
T Consensus        86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~  163 (337)
T 1pby_B           86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEA  163 (337)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTT
T ss_pred             ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCC
Confidence            578999999999886            6799999999876542  2222222336789999988887  68999999998


Q ss_pred             ceEEEeeeeCCeEEEEEecCCCceEEEe------------------------------------------------cCCc
Q psy8891          68 EEKVRDIELHGKITSLDLSKGTETKFAG------------------------------------------------SSCN   99 (203)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------------------------~~~~   99 (203)
                      ++.+..+..+.....+.+++++..++..                                                ....
T Consensus       164 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  243 (337)
T 1pby_B          164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY  243 (337)
T ss_dssp             TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCce
Confidence            8876655432200011222222211100                                                0011


Q ss_pred             eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEe
Q psy8891         100 DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVG  179 (203)
Q Consensus       100 ~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  179 (203)
                      ..+.|+|+|++++++  ++.|++||+.+++.+..+.....                        ...+.++|++++|+++
T Consensus       244 ~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~------------------------~~~~~~s~dg~~l~~~  297 (337)
T 1pby_B          244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS------------------------YYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC------------------------CCEEEECTTSCEEEEE
T ss_pred             eeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCc------------------------eeeEEECCCCCEEEEE
Confidence            236788888888877  68899999888776655543322                        2245577899999999


Q ss_pred             cCCCcEEEEeCCCceeeeeecc
Q psy8891         180 SIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       180 s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                      +.++.|++||+.+++.+..++.
T Consensus       298 ~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          298 GALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             SBSSEEEEEETTTCCEEEEEEC
T ss_pred             cCCCcEEEEECcCCcEEEEEEc
Confidence            9999999999999999988763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1e-15  Score=119.07  Aligned_cols=158  Identities=16%  Similarity=0.184  Sum_probs=114.3

Q ss_pred             cCceEEEEeCCCCEEEEecCCCeEEEEECC--CceEEEeeeeC-CeEEEEEecCC--CceEEEecCCce-----------
Q psy8891          37 SCNDLVTYDGAGTTIISGHFDKKVRFWDFR--AEEKVRDIELH-GKITSLDLSKG--TETKFAGSSCND-----------  100 (203)
Q Consensus        37 ~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~--~~~~~~~~~~~-~~v~~~~~~~~--~~~~~~~~~~~~-----------  100 (203)
                      .....++++|++++|++|+.|+.|+|||+.  +.+.+..+..| +.|.+++++++  +..++.+.....           
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   91 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW   91 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence            334557889999999999999999999998  44556666654 67999999876  666665544332           


Q ss_pred             --------------EEEEcCC--CCEEEEeeCCCeEEEEECCCCceEE--EEec-cceEEEEEecC-------------C
Q psy8891         101 --------------LVTYDGA--GTTIISGHFDKKVRFWDFRAEEKVR--DIEL-HGKITSLDLSK-------------G  148 (203)
Q Consensus       101 --------------~~~~~~~--~~~l~s~s~d~~i~iWd~~~~~~~~--~~~~-~~~v~~~~~~~-------------~  148 (203)
                                    .+.|+|+  +..|++++.|++|++||++++....  .+.. ...+.++.+++             +
T Consensus        92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  171 (379)
T 3jrp_A           92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE  171 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred             eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence                          2567888  8999999999999999998774332  2222 34588888877             2


Q ss_pred             cEEEEeec--Ce-------------e-------EEeeeEEEEEEcC---CCEEEEecCCCcEEEEeCCCce
Q psy8891         149 KYYFVFAE--GF-------------K-------VQCDFTRAVFVVD---DDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       149 ~~~~~~~~--~~-------------~-------~~~~~~~~~~~~~---~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      ...++...  +.             .       ....+..+.++|+   +.+|++++.|+.|++||+++++
T Consensus       172 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          172 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence            33333221  10             0       0123456788999   8999999999999999998764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.74  E-value=7.7e-15  Score=112.62  Aligned_cols=195  Identities=12%  Similarity=0.111  Sum_probs=134.2

Q ss_pred             ceEEcCCCCEEEEEeC-CCcEEEEeCCCCCe-E--E-ecCcCceEEEEeCCCCEEEEecCCC---eEEEEECCCceEEEe
Q psy8891           2 CAKFLGDPTKVVSGSC-DRTLKIWDLRSTET-K--F-AGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAEEKVRD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-D~~v~lwdl~~~~~-~--~-~~~~~~~~~~~~~~~~~l~s~~~D~---~i~vwd~~~~~~~~~   73 (203)
                      +++|+||++.++.++. ++.|.+||+.+.+. .  . .+......+.++|++++|+++..++   .|++||+.+++.+..
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence            4789999997766665 89999999987653 2  1 1222222267899999998666653   999999999988888


Q ss_pred             eeeCCeEEEEEecCCCceEEEec-CCc----------------------------eEEEEcCCCCEEEEe-eCCCeEEEE
Q psy8891          74 IELHGKITSLDLSKGTETKFAGS-SCN----------------------------DLVTYDGAGTTIISG-HFDKKVRFW  123 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~-~~~----------------------------~~~~~~~~~~~l~s~-s~d~~i~iW  123 (203)
                      +........++++|++..++... ...                            ..+.|+|+|+.++.+ ..+++|++|
T Consensus       124 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  203 (331)
T 3u4y_A          124 IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGIL  203 (331)
T ss_dssp             EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEE
Confidence            77777778899999887554331 111                            124678999866554 468999999


Q ss_pred             ECCCCce---EEEEeccceEEEEEecCCcE-EEEeecCe-----------eE--Eeee--------------EEEEEEcC
Q psy8891         124 DFRAEEK---VRDIELHGKITSLDLSKGKY-YFVFAEGF-----------KV--QCDF--------------TRAVFVVD  172 (203)
Q Consensus       124 d~~~~~~---~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-----------~~--~~~~--------------~~~~~~~~  172 (203)
                      |+.+++.   +..+.....+..+.++++.. +++...+.           ..  ...+              ..+.++|+
T Consensus       204 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  283 (331)
T 3u4y_A          204 ETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKT  283 (331)
T ss_dssp             ECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTT
T ss_pred             ECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCC
Confidence            9998887   77777666677777877644 33322111           00  0000              11478899


Q ss_pred             CCEEEEe-cCCCcEEEEeCCCceee
Q psy8891         173 DDYVAVG-SIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       173 ~~~l~s~-s~d~~v~~wd~~~~~~~  196 (203)
                      +++|+.+ ..++.|++||+.+..+.
T Consensus       284 g~~l~v~~~~~~~v~v~d~~~~~~~  308 (331)
T 3u4y_A          284 ETKLFISANISRELKVFTISGKVVG  308 (331)
T ss_dssp             SSEEEEEETTTTEEEEEETTSCEEE
T ss_pred             CCEEEEecCCCCcEEEEEecCCccc
Confidence            9987655 45679999999876543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.71  E-value=3.7e-14  Score=109.47  Aligned_cols=199  Identities=12%  Similarity=0.081  Sum_probs=138.9

Q ss_pred             ceEEcCCCCEEEEEeC-------CCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCE-EEEecCCCeEEEEECCCceEE
Q psy8891           2 CAKFLGDPTKVVSGSC-------DRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTT-IISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-------D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~-l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      .++|+|+++.++.++.       +++|.+||+.+.+...  ........+.++++++. +++...++.|.+||+.+++.+
T Consensus        45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~  124 (353)
T 3vgz_A           45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK  124 (353)
T ss_dssp             EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred             ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE
Confidence            4689999999888774       5689999998866432  11222233678899884 556667899999999999887


Q ss_pred             EeeeeCC----------eEEEEEecCCCceEEEec--CCce-----------------------EEEEcCCCCEEEEeeC
Q psy8891          72 RDIELHG----------KITSLDLSKGTETKFAGS--SCND-----------------------LVTYDGAGTTIISGHF  116 (203)
Q Consensus        72 ~~~~~~~----------~v~~~~~~~~~~~~~~~~--~~~~-----------------------~~~~~~~~~~l~s~s~  116 (203)
                      ..+..+.          .+..+.+++++..++...  ....                       .+.|+|+|+.++.++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  204 (353)
T 3vgz_A          125 GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA  204 (353)
T ss_dssp             EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT
T ss_pred             EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC
Confidence            7776532          267889999887665543  1111                       1357889999999999


Q ss_pred             CCeEEEEECCCCceEEEEec-----cceEEEEEecCCc-EEEEeecC-eeE----------Ee-----eeEEEEEEcCCC
Q psy8891         117 DKKVRFWDFRAEEKVRDIEL-----HGKITSLDLSKGK-YYFVFAEG-FKV----------QC-----DFTRAVFVVDDD  174 (203)
Q Consensus       117 d~~i~iWd~~~~~~~~~~~~-----~~~v~~~~~~~~~-~~~~~~~~-~~~----------~~-----~~~~~~~~~~~~  174 (203)
                      ++.|.+||+.+++....+..     ...+..+.++++. .+++.... ..+          ..     ....+.++|+++
T Consensus       205 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~  284 (353)
T 3vgz_A          205 DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARN  284 (353)
T ss_dssp             TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTT
T ss_pred             CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCC
Confidence            99999999999988877765     2235667776643 33333221 100          00     112467889998


Q ss_pred             EEE-EecCCCcEEEEeCCCceeeeeec
Q psy8891         175 YVA-VGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       175 ~l~-s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +++ +...++.|.+||..+++.+..++
T Consensus       285 ~l~v~~~~~~~v~~~d~~~~~~~~~~~  311 (353)
T 3vgz_A          285 EAYVTHRQAGKVSVIDAKSYKVVKTFD  311 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            654 45579999999999999988775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.71  E-value=1e-14  Score=112.35  Aligned_cols=132  Identities=10%  Similarity=0.068  Sum_probs=93.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc--CceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS--CNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~--~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      .+++++++..+++++.|++|++||+.+++..  .....  ....+.++|+++.+ +++..++.|.+||+.+++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            4577889999999999999999999886543  22222  23456788998855 5667889999999999887766654


Q ss_pred             CC-------eEEEEEecCCCceEEEecCC------------ce-------------------------EEEEcCCCCEEE
Q psy8891          77 HG-------KITSLDLSKGTETKFAGSSC------------ND-------------------------LVTYDGAGTTII  112 (203)
Q Consensus        77 ~~-------~v~~~~~~~~~~~~~~~~~~------------~~-------------------------~~~~~~~~~~l~  112 (203)
                      ..       .+..++++|++..++.+...            ..                         .+.|+|+|+ ++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence            22       15677888888776654411            11                         134889998 66


Q ss_pred             EeeCCCeEEEEECCCCceEEEEec
Q psy8891         113 SGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus       113 s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      .++.  .|.+||+.+++....+..
T Consensus       163 ~~~~--~i~~~d~~~~~~~~~~~~  184 (349)
T 1jmx_B          163 VAGP--DIYKMDVKTGKYTVALPL  184 (349)
T ss_dssp             EESS--SEEEECTTTCCEEEEECS
T ss_pred             EccC--cEEEEeCCCCceeccccc
Confidence            6543  499999998887766543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.69  E-value=1.8e-14  Score=114.77  Aligned_cols=165  Identities=12%  Similarity=0.016  Sum_probs=108.9

Q ss_pred             CCEEEEEeCC------CcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCC---eEEEEECCCceEEEeeeeC
Q psy8891           9 PTKVVSGSCD------RTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         9 ~~~l~t~s~D------~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~---~i~vwd~~~~~~~~~~~~~   77 (203)
                      +.+++.++.+      ++|++||+......  ..+......+.|+|+++.|++++.|+   .|++||+++++........
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~  222 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP  222 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence            6777777665      79999999864432  22333345578999999999999885   9999999988775443344


Q ss_pred             CeEEEEEecCCCceEE-EecCCc------------------------eEEEEcCCCCEEEEeeC-CC--eEEEEECCCCc
Q psy8891          78 GKITSLDLSKGTETKF-AGSSCN------------------------DLVTYDGAGTTIISGHF-DK--KVRFWDFRAEE  129 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~-~~~~~~------------------------~~~~~~~~~~~l~s~s~-d~--~i~iWd~~~~~  129 (203)
                      +.+.+++|+|++..++ .+....                        ....|+|+|+.|++++. ++  .|.+||+.+++
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            6688888888777555 221110                        12456777777766665 33  55666766554


Q ss_pred             eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCC---CcEEEEeCCCceeee
Q psy8891         130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSID---GNIYVWDCNTEQVEA  197 (203)
Q Consensus       130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---~~v~~wd~~~~~~~~  197 (203)
                      .. .+..+.                       .......++|++++|++++.+   ..|++||+.++++..
T Consensus       303 ~~-~l~~~~-----------------------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~  349 (415)
T 2hqs_A          303 PQ-RITWEG-----------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV  349 (415)
T ss_dssp             CE-ECCCSS-----------------------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred             EE-EEecCC-----------------------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE
Confidence            21 111111                       012345678999999888764   589999999887743

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.68  E-value=7.7e-16  Score=131.18  Aligned_cols=152  Identities=16%  Similarity=0.157  Sum_probs=108.6

Q ss_pred             ceEEcCC--CCEEEEEeCCCcEEEEeCCCCC--eE--Ee-cCcCceEEEEeCC--CCEEEEecCCCeEEEEECCCceE--
Q psy8891           2 CAKFLGD--PTKVVSGSCDRTLKIWDLRSTE--TK--FA-GSSCNDLVTYDGA--GTTIISGHFDKKVRFWDFRAEEK--   70 (203)
Q Consensus         2 ~~~~~~~--~~~l~t~s~D~~v~lwdl~~~~--~~--~~-~~~~~~~~~~~~~--~~~l~s~~~D~~i~vwd~~~~~~--   70 (203)
                      +++|+|+  +..|+||+.||+|++||+.+++  ..  .. +......+.++|+  ++.+++|+.||+|++||++.+..  
T Consensus        58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~  137 (753)
T 3jro_A           58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS  137 (753)
T ss_dssp             EEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC
T ss_pred             EEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc
Confidence            6789988  9999999999999999998764  21  11 2233455778888  89999999999999999988733  


Q ss_pred             EEeee-eCCeEEEEEecCC-------------CceEEEecCCc---------------------------eEEEEcCC--
Q psy8891          71 VRDIE-LHGKITSLDLSKG-------------TETKFAGSSCN---------------------------DLVTYDGA--  107 (203)
Q Consensus        71 ~~~~~-~~~~v~~~~~~~~-------------~~~~~~~~~~~---------------------------~~~~~~~~--  107 (203)
                      ...+. ....|.++.++|.             +..+++++..+                           ..+.|+|+  
T Consensus       138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  217 (753)
T 3jro_A          138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  217 (753)
T ss_dssp             CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC
Confidence            22232 3467999999983             55555544322                           23568899  


Q ss_pred             -CCEEEEeeCCCeEEEEECCCCceEEE------EeccceEEEEEecCCcEEEE
Q psy8891         108 -GTTIISGHFDKKVRFWDFRAEEKVRD------IELHGKITSLDLSKGKYYFV  153 (203)
Q Consensus       108 -~~~l~s~s~d~~i~iWd~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~  153 (203)
                       +..|++++.|++|++||+++++....      ......+.++.++++...++
T Consensus       218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  270 (753)
T 3jro_A          218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA  270 (753)
T ss_dssp             SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEE
T ss_pred             CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEE
Confidence             89999999999999999987642111      11224566777776654443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.68  E-value=4.5e-15  Score=125.69  Aligned_cols=177  Identities=11%  Similarity=0.005  Sum_probs=117.4

Q ss_pred             ceEEcCCCCEEEEEeC-CC-----cEEEEeCCCCCeE--EecCc-------------------------CceEEEEeCCC
Q psy8891           2 CAKFLGDPTKVVSGSC-DR-----TLKIWDLRSTETK--FAGSS-------------------------CNDLVTYDGAG   48 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-D~-----~v~lwdl~~~~~~--~~~~~-------------------------~~~~~~~~~~~   48 (203)
                      +++|+|||++|++++. |+     +|++||+.+++..  .....                         ....+.|+||+
T Consensus        41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg  120 (741)
T 2ecf_A           41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA  120 (741)
T ss_dssp             EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred             CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence            5789999999999998 88     9999999886642  21111                         02346789999


Q ss_pred             CEEEEecCCCeEEEEECCCc---eEEEeeeeCCeEEEEEecCCCceEEEecCC---------------------------
Q psy8891          49 TTIISGHFDKKVRFWDFRAE---EKVRDIELHGKITSLDLSKGTETKFAGSSC---------------------------   98 (203)
Q Consensus        49 ~~l~s~~~D~~i~vwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------------------------   98 (203)
                      +.|++++. +.|++||+.++   +..........+..++++|++..++.....                           
T Consensus       121 ~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~  199 (741)
T 2ecf_A          121 QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGI  199 (741)
T ss_dssp             SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESC
T ss_pred             CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccc
Confidence            99999886 99999999887   433222223567888888877655432210                           


Q ss_pred             -----------ceEEEEcCCCCEEEEeeCCC---------------------------------eEEEEECCC-CceEEE
Q psy8891          99 -----------NDLVTYDGAGTTIISGHFDK---------------------------------KVRFWDFRA-EEKVRD  133 (203)
Q Consensus        99 -----------~~~~~~~~~~~~l~s~s~d~---------------------------------~i~iWd~~~-~~~~~~  133 (203)
                                 ...+.|+|||+.|++++.|+                                 .|.+||+.+ ++....
T Consensus       200 ~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~  279 (741)
T 2ecf_A          200 AEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWI  279 (741)
T ss_dssp             CCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEE
T ss_pred             cceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEe
Confidence                       02256777777777776654                                 566666655 443211


Q ss_pred             EeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC-----CCcEEEEeCCCceeeeeecc
Q psy8891         134 IELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI-----DGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       134 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-----d~~v~~wd~~~~~~~~~~~~  201 (203)
                      ....                     .....+....+ ||+++|+.++.     +..|++||+.++++...++.
T Consensus       280 ~~~~---------------------~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~  330 (741)
T 2ecf_A          280 DLGK---------------------EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE  330 (741)
T ss_dssp             CCCS---------------------CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE
T ss_pred             cCCC---------------------CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc
Confidence            1000                     00112345678 99999887654     67899999999988877653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.68  E-value=1.9e-14  Score=110.14  Aligned_cols=176  Identities=11%  Similarity=0.042  Sum_probs=114.0

Q ss_pred             ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeE--EecCc------CceEEEEeCCCCEEEEec------------CCCeE
Q psy8891           2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETK--FAGSS------CNDLVTYDGAGTTIISGH------------FDKKV   60 (203)
Q Consensus         2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~--~~~~~------~~~~~~~~~~~~~l~s~~------------~D~~i   60 (203)
                      +++|+|+++.+ ++++.++.|.+||+.+++..  .....      ....+.++|+++.|++++            .++.|
T Consensus        38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i  117 (337)
T 1pby_B           38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV  117 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred             ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceE
Confidence            57899999865 56667899999999886643  22111      223467899999988886            67999


Q ss_pred             EEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceE
Q psy8891          61 RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKI  140 (203)
Q Consensus        61 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v  140 (203)
                      .+||+.+++.+..+.....+..                   +.|+|+|+.|+++  ++.|.+||+.+++....+......
T Consensus       118 ~v~d~~~~~~~~~~~~~~~~~~-------------------~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~  176 (337)
T 1pby_B          118 ALYDAETLSRRKAFEAPRQITM-------------------LAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE  176 (337)
T ss_dssp             EEEETTTTEEEEEEECCSSCCC-------------------EEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT
T ss_pred             EEEECCCCcEEEEEeCCCCcce-------------------eEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC
Confidence            9999988877655543322222                   3466777777776  678999999888776665443200


Q ss_pred             EEEEecCCcE----------------------------------EEEe--ecCeeE-------EeeeEEEEEEcCCCEEE
Q psy8891         141 TSLDLSKGKY----------------------------------YFVF--AEGFKV-------QCDFTRAVFVVDDDYVA  177 (203)
Q Consensus       141 ~~~~~~~~~~----------------------------------~~~~--~~~~~~-------~~~~~~~~~~~~~~~l~  177 (203)
                      ....++++..                                  +...  ..+...       ......+.++|++++++
T Consensus       177 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  256 (337)
T 1pby_B          177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF  256 (337)
T ss_dssp             TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEE
Confidence            0001111100                                  0000  000000       01223477899999998


Q ss_pred             EecCCCcEEEEeCCCceeeeeec
Q psy8891         178 VGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       178 s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ++  ++.|++||+.+++.+..++
T Consensus       257 ~~--~~~v~~~d~~~~~~~~~~~  277 (337)
T 1pby_B          257 GA--YNVLESFDLEKNASIKRVP  277 (337)
T ss_dssp             EE--ESEEEEEETTTTEEEEEEE
T ss_pred             Ee--CCeEEEEECCCCcCcceec
Confidence            88  7999999999999888775

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.67  E-value=1.3e-14  Score=108.70  Aligned_cols=176  Identities=14%  Similarity=0.088  Sum_probs=106.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCC-CCeEEe--cC--cCceEEEEeCCCCEEEEec--CCCeEEEEEC--CCceEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRS-TETKFA--GS--SCNDLVTYDGAGTTIISGH--FDKKVRFWDF--RAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~-~~~~~~--~~--~~~~~~~~~~~~~~l~s~~--~D~~i~vwd~--~~~~~~~   72 (203)
                      +++|+||+++|++++ ++.|++||+.+ .+....  ..  .....+.|+|+++.|++++  .++..+||.+  ..++ ..
T Consensus        46 ~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~  123 (297)
T 2ojh_A           46 APNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR  123 (297)
T ss_dssp             EEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE
T ss_pred             eeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE
Confidence            578999999999987 78999999988 654322  11  1223467899999999998  4456666655  3333 33


Q ss_pred             eeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEE-EeeCCCeEEEEECC--CCceEEEEeccceEEEEEecCCc
Q psy8891          73 DIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTII-SGHFDKKVRFWDFR--AEEKVRDIELHGKITSLDLSKGK  149 (203)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~s~d~~i~iWd~~--~~~~~~~~~~~~~v~~~~~~~~~  149 (203)
                      .+..+..+..++                   |+|+++.|+ +++.|+.+++|++.  +++..........+..+.++++.
T Consensus       124 ~~~~~~~~~~~~-------------------~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  184 (297)
T 2ojh_A          124 LMTKNLPSYWHG-------------------WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG  184 (297)
T ss_dssp             ECCSSSSEEEEE-------------------ECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred             EeecCCCccceE-------------------ECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence            333333344444                   455555555 56667777777643  23222111222346666665543


Q ss_pred             EEEE-eec--C-ee----------------EEeeeEEEEEEcCCCEEEEecCC-----------CcEEEEeCCCceeeee
Q psy8891         150 YYFV-FAE--G-FK----------------VQCDFTRAVFVVDDDYVAVGSID-----------GNIYVWDCNTEQVEAV  198 (203)
Q Consensus       150 ~~~~-~~~--~-~~----------------~~~~~~~~~~~~~~~~l~s~s~d-----------~~v~~wd~~~~~~~~~  198 (203)
                      ..++ ...  + ..                ....+....++|++++|++++.+           +.|++||+.+++....
T Consensus       185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred             CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence            3222 110  0 00                01123456788999999888876           5699999998876443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.67  E-value=8e-16  Score=129.91  Aligned_cols=181  Identities=7%  Similarity=0.009  Sum_probs=114.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc----CceEEEEeCCCCEEEEecCC---------CeEEEEECC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS----CNDLVTYDGAGTTIISGHFD---------KKVRFWDFR   66 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~----~~~~~~~~~~~~~l~s~~~D---------~~i~vwd~~   66 (203)
                      +++|+|||+++++ +.|++|++||+.+++..  .....    ....+.++||++.|++++.+         +.+++||+.
T Consensus        21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~   99 (723)
T 1xfd_A           21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (723)
T ss_dssp             CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence            5789999998776 78999999999876542  22222    13457899999999998764         788899998


Q ss_pred             CceEEEeeeeC----CeEEEEEecCCCceEEEecC--------------------C--c------------------eEE
Q psy8891          67 AEEKVRDIELH----GKITSLDLSKGTETKFAGSS--------------------C--N------------------DLV  102 (203)
Q Consensus        67 ~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~--------------------~--~------------------~~~  102 (203)
                      +++. ..+...    ..+..++++|++..++....                    .  .                  ..+
T Consensus       100 ~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~  178 (723)
T 1xfd_A          100 HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (723)
T ss_dssp             SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceE
Confidence            8765 222211    12566677777765443211                    0  0                  247


Q ss_pred             EEcCCCCEEEEeeCCC----------------------------------eEEEEECCCCceEEEEeccceEEEEEecCC
Q psy8891         103 TYDGAGTTIISGHFDK----------------------------------KVRFWDFRAEEKVRDIELHGKITSLDLSKG  148 (203)
Q Consensus       103 ~~~~~~~~l~s~s~d~----------------------------------~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~  148 (203)
                      .|+|||+.|++++.|+                                  +|++||+.+++....+..+..         
T Consensus       179 ~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~---------  249 (723)
T 1xfd_A          179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD---------  249 (723)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC---------
T ss_pred             EECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc---------
Confidence            7899999998887653                                  344444444332222211000         


Q ss_pred             cEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC----CCcEEEEeCCCceeeeeecc
Q psy8891         149 KYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI----DGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~v~~wd~~~~~~~~~~~~  201 (203)
                              .......+....++||++++++.+.    +..|++||+.++++...+..
T Consensus       250 --------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~  298 (723)
T 1xfd_A          250 --------PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (723)
T ss_dssp             --------GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             --------CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence                    0000112345678899988876643    46799999999988776643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.66  E-value=4.1e-14  Score=108.58  Aligned_cols=171  Identities=9%  Similarity=0.008  Sum_probs=109.8

Q ss_pred             ceEEcCCCCEEEEEeCC-CcEEEEeCC--CCCeE----EecCcCceEEEEeCCCCEEEEec-CCCeEEEEECCCc---eE
Q psy8891           2 CAKFLGDPTKVVSGSCD-RTLKIWDLR--STETK----FAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAE---EK   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D-~~v~lwdl~--~~~~~----~~~~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~~~---~~   70 (203)
                      +++|+|+++.|++++.+ +.|++|++.  +++..    .........++++|+++.|++++ .++.|++||+..+   +.
T Consensus        42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~  121 (343)
T 1ri6_A           42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV  121 (343)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred             eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence            57899999999988887 999999997  44421    12222334577899999776665 4889999999532   22


Q ss_pred             EEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCC-CceEE----EEec--cceEEE
Q psy8891          71 VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRA-EEKVR----DIEL--HGKITS  142 (203)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~-~~~~~----~~~~--~~~v~~  142 (203)
                      +..+.....+                   ..+.|+|+|+.|++++ .+++|++||+.+ ++...    .+..  ...+..
T Consensus       122 ~~~~~~~~~~-------------------~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  182 (343)
T 1ri6_A          122 VDVVEGLDGC-------------------HSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH  182 (343)
T ss_dssp             EEEECCCTTB-------------------CCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEE
T ss_pred             cccccCCCCc-------------------eEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcce
Confidence            2222221112                   2245778888888777 899999999987 54432    2222  235667


Q ss_pred             EEecCCcE-EEEeec--Ce-------------eEEe-------------eeEEEEEEcCCCEEE-EecCCCcEEEEeCC
Q psy8891         143 LDLSKGKY-YFVFAE--GF-------------KVQC-------------DFTRAVFVVDDDYVA-VGSIDGNIYVWDCN  191 (203)
Q Consensus       143 ~~~~~~~~-~~~~~~--~~-------------~~~~-------------~~~~~~~~~~~~~l~-s~s~d~~v~~wd~~  191 (203)
                      +.++++.. +++...  +.             ....             ....+.++|++++|+ ++..|+.|++||+.
T Consensus       183 ~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          183 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            77776643 333221  10             0000             112477889998776 55689999999998

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.64  E-value=4.1e-14  Score=108.57  Aligned_cols=170  Identities=7%  Similarity=0.008  Sum_probs=98.1

Q ss_pred             ceEEcCCCCEEEEEeC-CCcEEEEeCCCC---CeE--EecCcCceEEEEeCCCCEEEEec-CCCeEEEEECCC-ceEEE-
Q psy8891           2 CAKFLGDPTKVVSGSC-DRTLKIWDLRST---ETK--FAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRA-EEKVR-   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-D~~v~lwdl~~~---~~~--~~~~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~~-~~~~~-   72 (203)
                      +++|+|+++.|++++. ++.|++||+..+   +..  .........+.++|+++.|++++ .|+.|++||+.. ++... 
T Consensus        88 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  167 (343)
T 1ri6_A           88 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ  167 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred             EEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence            5789999998876665 889999999422   111  12222233467899999888777 899999999987 54321 


Q ss_pred             ---eeee--CCeEEEEEecCCCceEEEec-CCc---------------------------------eEEEEcCCCCEEE-
Q psy8891          73 ---DIEL--HGKITSLDLSKGTETKFAGS-SCN---------------------------------DLVTYDGAGTTII-  112 (203)
Q Consensus        73 ---~~~~--~~~v~~~~~~~~~~~~~~~~-~~~---------------------------------~~~~~~~~~~~l~-  112 (203)
                         .+..  ...+..++++|++..++... ...                                 ..+.|+|+|+.|+ 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v  247 (343)
T 1ri6_A          168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA  247 (343)
T ss_dssp             EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE
T ss_pred             cccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE
Confidence               1121  12455566666554332211 000                                 0144555555444 


Q ss_pred             EeeCCCeEEEEECCC--Cc--eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec-CCCcEEE
Q psy8891         113 SGHFDKKVRFWDFRA--EE--KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS-IDGNIYV  187 (203)
Q Consensus       113 s~s~d~~i~iWd~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~v~~  187 (203)
                      +...++.|++||+..  ++  .+..+....                        ....+.++|++++|++++ .++.|++
T Consensus       248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------------------------~~~~~~~s~dg~~l~~~~~~~~~v~v  303 (343)
T 1ri6_A          248 CDRTASLITVFSVSEDGSVLSKEGFQPTET------------------------QPRGFNVDHSGKYLIAAGQKSHHISV  303 (343)
T ss_dssp             EETTTTEEEEEEECTTSCCEEEEEEEECSS------------------------SCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             EecCCCEEEEEEEcCCCCceEEeeeecCCC------------------------ccceEEECCCCCEEEEecCCCCeEEE
Confidence            333455666666542  11  111111100                        123456788999887777 6899999


Q ss_pred             E--eCCCcee
Q psy8891         188 W--DCNTEQV  195 (203)
Q Consensus       188 w--d~~~~~~  195 (203)
                      |  |..++++
T Consensus       304 ~~~d~~~g~~  313 (343)
T 1ri6_A          304 YEIVGEQGLL  313 (343)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEcCCCcee
Confidence            9  5556644

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.64  E-value=1.9e-13  Score=104.80  Aligned_cols=180  Identities=9%  Similarity=0.023  Sum_probs=119.7

Q ss_pred             eEEcCCCCE-EEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecC-CCeEEEEECCCceE-EEeeeeC
Q psy8891           3 AKFLGDPTK-VVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHF-DKKVRFWDFRAEEK-VRDIELH   77 (203)
Q Consensus         3 ~~~~~~~~~-l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~-D~~i~vwd~~~~~~-~~~~~~~   77 (203)
                      +.|.+++.+ +++++.+++|++||+.+++...  ........+.++|+++.|+.++. ++.|.+||+.+++. ...+..+
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            346666655 7788899999999998876532  22222225788999996666655 89999999988775 4444332


Q ss_pred             CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC---eEEEEECCCCceEEEEeccceEEEEEecCCc-EEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAEEKVRDIELHGKITSLDLSKGK-YYFV  153 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~---~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~  153 (203)
                      .....                  .+.|+|+|++|++...++   .|++||+.+++.+..+.....+..+.++++. .+++
T Consensus        83 ~~~~~------------------~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           83 QSSMA------------------DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLIL  144 (331)
T ss_dssp             SSCCC------------------CEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEE
T ss_pred             CCCcc------------------ceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEE
Confidence            22111                  145777888888555553   9999999999888888777777888888764 2333


Q ss_pred             eec--Ce--e---------EE----------eeeEEEEEEcCCCEE-EEecCCCcEEEEeCCCcee---eeeec
Q psy8891         154 FAE--GF--K---------VQ----------CDFTRAVFVVDDDYV-AVGSIDGNIYVWDCNTEQV---EAVLK  200 (203)
Q Consensus       154 ~~~--~~--~---------~~----------~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~~~~~---~~~~~  200 (203)
                      ...  +.  .         ..          .....+.++|+++++ +++..++.|++||+.+++.   +..++
T Consensus       145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~  218 (331)
T 3u4y_A          145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG  218 (331)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred             EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc
Confidence            321  11  1         00          112346688999865 5555789999999999988   66664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.64  E-value=1.4e-13  Score=106.45  Aligned_cols=173  Identities=11%  Similarity=0.074  Sum_probs=105.4

Q ss_pred             ceEEcCCCCEEEEEe-CCCcEEEEeCCC-CCeE----EecC--c--------CceEEEEeCCCCEEEEecCCCeEEEEEC
Q psy8891           2 CAKFLGDPTKVVSGS-CDRTLKIWDLRS-TETK----FAGS--S--------CNDLVTYDGAGTTIISGHFDKKVRFWDF   65 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s-~D~~v~lwdl~~-~~~~----~~~~--~--------~~~~~~~~~~~~~l~s~~~D~~i~vwd~   65 (203)
                      .++|+||+++|++++ .+++|++||+.. +...    ....  .        ....+.++|+++.+++...++.|++||+
T Consensus        90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~  169 (347)
T 3hfq_A           90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV  169 (347)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence            478999999998888 789999999963 2211    1110  0        1234788999997777777899999999


Q ss_pred             C-CceEE--Eeeee--CCeEEEEEecCCCceEEEec-CCc---------------------------------eEEEEcC
Q psy8891          66 R-AEEKV--RDIEL--HGKITSLDLSKGTETKFAGS-SCN---------------------------------DLVTYDG  106 (203)
Q Consensus        66 ~-~~~~~--~~~~~--~~~v~~~~~~~~~~~~~~~~-~~~---------------------------------~~~~~~~  106 (203)
                      . .++..  ..+..  ...+..++++|++..++... ...                                 ..+.|+|
T Consensus       170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp  249 (347)
T 3hfq_A          170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH  249 (347)
T ss_dssp             CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred             CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence            8 44322  11121  12456677777766443311 100                                 0145777


Q ss_pred             CCCEE-EEeeCCCeEEEEECCCCce---EEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC-
Q psy8891         107 AGTTI-ISGHFDKKVRFWDFRAEEK---VRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI-  181 (203)
Q Consensus       107 ~~~~l-~s~s~d~~i~iWd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-  181 (203)
                      +|++| ++...+++|.+||+.....   +..+..++                       .....++++|++++|++++. 
T Consensus       250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG-----------------------DFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS-----------------------SCCCEEEECTTSSEEEEEETT
T ss_pred             CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC-----------------------CCcCeEEECCCCCEEEEEEcC
Confidence            77766 3444567788887752211   11111100                       01234667899998888775 


Q ss_pred             CCcEEEE--eCCCceeee
Q psy8891         182 DGNIYVW--DCNTEQVEA  197 (203)
Q Consensus       182 d~~v~~w--d~~~~~~~~  197 (203)
                      ++.|.+|  |..+|++..
T Consensus       307 ~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          307 TDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             TTEEEEEEECTTTCCEEE
T ss_pred             CCcEEEEEEeCCCCeEEe
Confidence            5899999  666777664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.62  E-value=8.7e-15  Score=121.00  Aligned_cols=174  Identities=11%  Similarity=-0.010  Sum_probs=109.6

Q ss_pred             ceEEcCCCCEEEEEeC-CCcEEEEeCCCCCeEEe-cCc--CceEEEEeCCCCEEEEecC---CCeEEEEECCC--ceEEE
Q psy8891           2 CAKFLGDPTKVVSGSC-DRTLKIWDLRSTETKFA-GSS--CNDLVTYDGAGTTIISGHF---DKKVRFWDFRA--EEKVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-D~~v~lwdl~~~~~~~~-~~~--~~~~~~~~~~~~~l~s~~~---D~~i~vwd~~~--~~~~~   72 (203)
                      +++|+|||++|++++. |++++||++.+++.... ...  ....+.|+|+ +.+++++.   +...++|.+..  .....
T Consensus        26 ~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~  104 (582)
T 3o4h_A           26 SLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ  104 (582)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE
T ss_pred             eeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc
Confidence            6899999999999887 99999999866543321 111  2233567787 78887765   55667765543  21111


Q ss_pred             eeeeCCeEEEEEecCCCceEE-E-ecCC-------------------ceEEEEcCCCCEEEEeeCC----CeEEEEECCC
Q psy8891          73 DIELHGKITSLDLSKGTETKF-A-GSSC-------------------NDLVTYDGAGTTIISGHFD----KKVRFWDFRA  127 (203)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~-~-~~~~-------------------~~~~~~~~~~~~l~s~s~d----~~i~iWd~~~  127 (203)
                      .+.........+++++++.++ + +...                   .....|+|||+.|++++.|    ..|++||+.+
T Consensus       105 ~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~  184 (582)
T 3o4h_A          105 RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS  184 (582)
T ss_dssp             ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC
Confidence            222222223345555543321 1 1110                   0235678889988888777    7888899887


Q ss_pred             CceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC--cEEEEeCCCceeeeeecc
Q psy8891         128 EEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG--NIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--~v~~wd~~~~~~~~~~~~  201 (203)
                      ++.. .+..+..                       ......|+|||++|+++..++  .|++||++++++. .+.+
T Consensus       185 g~~~-~l~~~~~-----------------------~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~  235 (582)
T 3o4h_A          185 GGLR-VFDSGEG-----------------------SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL  235 (582)
T ss_dssp             CCCE-EECCSSC-----------------------EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred             CCce-EeecCCC-----------------------ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence            7643 2221110                       123456789999999888888  8999999998887 5554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=122.49  Aligned_cols=91  Identities=12%  Similarity=0.094  Sum_probs=64.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCc----CceEEEEeCCCCEEEEecC---------CCeEEEEECC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSS----CNDLVTYDGAGTTIISGHF---------DKKVRFWDFR   66 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~----~~~~~~~~~~~~~l~s~~~---------D~~i~vwd~~   66 (203)
                      +++|+||++.+++ +.|++|++||+.+++...  ....    ....+.++||++.|++++.         |+.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            5789999965554 569999999999876532  2111    1345789999999998876         7999999999


Q ss_pred             CceEEEeeeeCCeEEEEEecCCCceEE
Q psy8891          67 AEEKVRDIELHGKITSLDLSKGTETKF   93 (203)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (203)
                      +++.+........+..++++|++..++
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la  125 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLA  125 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEE
T ss_pred             CCccccceecCcccccceECCCCCEEE
Confidence            887631112224466677777776554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.58  E-value=6.5e-13  Score=111.97  Aligned_cols=192  Identities=9%  Similarity=0.041  Sum_probs=129.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCC-----CCeEE--ecCcC---------------ceEEEEeCCCCEEEEec----
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRS-----TETKF--AGSSC---------------NDLVTYDGAGTTIISGH----   55 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~-----~~~~~--~~~~~---------------~~~~~~~~~~~~l~s~~----   55 (203)
                      +++|+|||+.|+++ .|++|++||+.+     ++...  .....               ...+.|+|+++.|++++    
T Consensus       125 ~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~  203 (706)
T 2z3z_A          125 SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQS  203 (706)
T ss_dssp             TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECT
T ss_pred             CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCC
Confidence            57899999999995 689999999987     55432  11111               13477999999999987    


Q ss_pred             -----------------------------CCCeEEEEECCCceEEEeee---eCCeEEEEEecCCCceEEEecCC-----
Q psy8891          56 -----------------------------FDKKVRFWDFRAEEKVRDIE---LHGKITSLDLSKGTETKFAGSSC-----   98 (203)
Q Consensus        56 -----------------------------~D~~i~vwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~-----   98 (203)
                                                   .+..|++||+.+++......   ....+..++|+|++..++.....     
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  283 (706)
T 2z3z_A          204 MVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNE  283 (706)
T ss_dssp             TSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCE
T ss_pred             CCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCe
Confidence                                         44789999999887544332   22468889999988765542110     


Q ss_pred             ----------c------------------eEEEEcC--CCCEEEEeeCCCeEEEEECC-CCceEEEEeccc-eEEE-EEe
Q psy8891          99 ----------N------------------DLVTYDG--AGTTIISGHFDKKVRFWDFR-AEEKVRDIELHG-KITS-LDL  145 (203)
Q Consensus        99 ----------~------------------~~~~~~~--~~~~l~s~s~d~~i~iWd~~-~~~~~~~~~~~~-~v~~-~~~  145 (203)
                                .                  ..+.|+|  +|+++++++.|+.+++|++. ++..++.+..+. .+.. +.+
T Consensus       284 ~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~  363 (706)
T 2z3z_A          284 CKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF  363 (706)
T ss_dssp             EEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred             eEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence                      0                  0137899  99999999999999999876 555555554432 3444 566


Q ss_pred             cCCcE-EEEeecC-----eeE---------------EeeeEEEEEEcCCCEEEEecCC----CcEEEEeCCCce
Q psy8891         146 SKGKY-YFVFAEG-----FKV---------------QCDFTRAVFVVDDDYVAVGSID----GNIYVWDCNTEQ  194 (203)
Q Consensus       146 ~~~~~-~~~~~~~-----~~~---------------~~~~~~~~~~~~~~~l~s~s~d----~~v~~wd~~~~~  194 (203)
                      +++.. ++.....     ..+               ...+....++|++++++..+.+    +.|++||+.+++
T Consensus       364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          364 DPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             cCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            66542 2222111     011               1123456789999988776544    459999999887

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.57  E-value=2.5e-13  Score=119.50  Aligned_cols=171  Identities=9%  Similarity=-0.008  Sum_probs=116.8

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-ecC------------cCceEEEEe-CCCCEEEEecCCCeEEEEECCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-AGS------------SCNDLVTYD-GAGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~------------~~~~~~~~~-~~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      +.+|+|||+.|++++ |+.|++||+...+... ...            .....+.|+ |+++.|++++ ++.|.+|++..
T Consensus       249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          249 PRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             EEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred             eeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence            468999999999885 8999999995433221 110            123457889 9999888887 88999999987


Q ss_pred             ceEEEeeeeCC-eEEEEEecCCCceEEEec-----------------------CCceEEEEcCCCCEEEEeeCCCeEEEE
Q psy8891          68 EEKVRDIELHG-KITSLDLSKGTETKFAGS-----------------------SCNDLVTYDGAGTTIISGHFDKKVRFW  123 (203)
Q Consensus        68 ~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~s~s~d~~i~iW  123 (203)
                      ++........+ .+..++|+ ++..++..+                       .....+.|+|+|+.|++++.++.|++|
T Consensus       327 ~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~  405 (1045)
T 1k32_A          327 TYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV  405 (1045)
T ss_dssp             SBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEE
Confidence            76543222233 56666666 543322211                       112346789999999999999999999


Q ss_pred             ECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC----------cEEEEeCCCc
Q psy8891         124 DFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG----------NIYVWDCNTE  193 (203)
Q Consensus       124 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~----------~v~~wd~~~~  193 (203)
                      |+.+++.......+..                       .+....|+||+++|++++.++          .|++||+.++
T Consensus       406 d~~tg~~~~~~~~~~~-----------------------~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          406 DLETGKPTVIERSREA-----------------------MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             ETTTCCEEEEEECSSS-----------------------CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             ECCCCceEEeccCCCC-----------------------CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence            9988876544322210                       123456789999998887754          8999999988


Q ss_pred             eeeeee
Q psy8891         194 QVEAVL  199 (203)
Q Consensus       194 ~~~~~~  199 (203)
                      + +..+
T Consensus       463 ~-~~~l  467 (1045)
T 1k32_A          463 K-IFAA  467 (1045)
T ss_dssp             E-EEEC
T ss_pred             c-EEEe
Confidence            7 4444

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.57  E-value=1.2e-13  Score=117.03  Aligned_cols=176  Identities=8%  Similarity=-0.000  Sum_probs=116.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCC---CeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRST---ETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~---~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++|+|||++|++++. ++|++||+.++   +..  .........+.|+|+++.|++++ ++.|++||+.+++.......
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC
Confidence            5789999999999986 99999999876   432  11222344578999999999887 46999999988766543322


Q ss_pred             CCe-----------------EEEEEecCCCceEEEecCC-----------------------------------------
Q psy8891          77 HGK-----------------ITSLDLSKGTETKFAGSSC-----------------------------------------   98 (203)
Q Consensus        77 ~~~-----------------v~~~~~~~~~~~~~~~~~~-----------------------------------------   98 (203)
                      +..                 +..+.|+|++..++.....                                         
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            211                 3567788887765443110                                         


Q ss_pred             ------------------ceEEEEcCCCCEEEEeeC-----CCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEee
Q psy8891          99 ------------------NDLVTYDGAGTTIISGHF-----DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        99 ------------------~~~~~~~~~~~~l~s~s~-----d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  155 (203)
                                        ...+.| |||+.|+.++.     +..|++||+.+++....+..+..         .      
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~---------~------  334 (741)
T 2ecf_A          271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP---------T------  334 (741)
T ss_dssp             STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS---------S------
T ss_pred             CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC---------C------
Confidence                              012467 88888886654     56899999988876544332110         0      


Q ss_pred             cCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC-Cceeeeeec
Q psy8891         156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN-TEQVEAVLK  200 (203)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~-~~~~~~~~~  200 (203)
                        .  ........|+||++++++++.|+.++||..+ .++ .+.+.
T Consensus       335 --~--~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~  375 (741)
T 2ecf_A          335 --W--VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT  375 (741)
T ss_dssp             --C--CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred             --c--CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence              0  0001234577899999999999988888765 344 55554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.56  E-value=3.5e-13  Score=100.91  Aligned_cols=167  Identities=9%  Similarity=0.080  Sum_probs=95.5

Q ss_pred             EEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC-ceEEEeeeeC--CeEEEEEecC
Q psy8891          13 VSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELH--GKITSLDLSK   87 (203)
Q Consensus        13 ~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~-~~~~~~~~~~--~~v~~~~~~~   87 (203)
                      .+++.|++|++||+.+++..  .........+.++|++++|++++ ++.|++||+.. ++.......+  ..+.      
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~------   88 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN------   88 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS------
T ss_pred             CCCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccccc------
Confidence            34678999999999886543  22333345678999999999986 88999999988 6654333222  1122      


Q ss_pred             CCceEEEecCCceEEEEcCCCCEEEEee--CCCeEEEEE--CCCCceEEEEe-----------ccceEEEEEe-cCCc-E
Q psy8891          88 GTETKFAGSSCNDLVTYDGAGTTIISGH--FDKKVRFWD--FRAEEKVRDIE-----------LHGKITSLDL-SKGK-Y  150 (203)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~i~iWd--~~~~~~~~~~~-----------~~~~v~~~~~-~~~~-~  150 (203)
                                   .+.|+|+|+.|++++  .++..++|.  +.+++. ..+.           ..++...+.. ..+. .
T Consensus        89 -------------~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  154 (297)
T 2ojh_A           89 -------------DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFD  154 (297)
T ss_dssp             -------------CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred             -------------ceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceE
Confidence                         245777888888888  334555554  444332 2211           1111111111 1111 1


Q ss_pred             EEEee-c-Cee-----EEeeeEEEEEEcCCCEEEEec-CCCcEEEEeCC-Cceeeeeec
Q psy8891         151 YFVFA-E-GFK-----VQCDFTRAVFVVDDDYVAVGS-IDGNIYVWDCN-TEQVEAVLK  200 (203)
Q Consensus       151 ~~~~~-~-~~~-----~~~~~~~~~~~~~~~~l~s~s-~d~~v~~wd~~-~~~~~~~~~  200 (203)
                      ++... . +..     ....+....++|++++|+.++ .|+.+++|+++ .++.+..+.
T Consensus       155 l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~  213 (297)
T 2ojh_A          155 IYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT  213 (297)
T ss_dssp             EEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred             EEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence            11111 1 110     012345677889999877666 59999999876 455555554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.56  E-value=8.8e-14  Score=117.26  Aligned_cols=63  Identities=10%  Similarity=0.006  Sum_probs=46.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      +++|+|| +.++.+ .|++|++||+.+++...  ........+.|+|+++.|+++ .|+.|++||+.+
T Consensus        86 ~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~  150 (706)
T 2z3z_A           86 RTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK  150 (706)
T ss_dssp             EEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred             eEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence            5789999 655555 36999999998765432  222222336789999999985 789999999988

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.55  E-value=4.9e-12  Score=97.47  Aligned_cols=139  Identities=13%  Similarity=0.095  Sum_probs=93.9

Q ss_pred             ceEEcCCCCEEEEEe--CCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGS--CDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s--~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++|+|++++++.++  .++.|.+||+.+.+...  . .......+.++|+++.|+.++.++.|.+||+.+++.+..+..
T Consensus       145 ~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~  224 (353)
T 3vgz_A          145 ELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL  224 (353)
T ss_dssp             EEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence            368999999887766  48899999998766432  2 112123467889999999999999999999999988766654


Q ss_pred             -----CCeEEEEEecCCCceEEEecCC-ce---------------------EEEEcCCCCEEEEee-CCCeEEEEECCCC
Q psy8891          77 -----HGKITSLDLSKGTETKFAGSSC-ND---------------------LVTYDGAGTTIISGH-FDKKVRFWDFRAE  128 (203)
Q Consensus        77 -----~~~v~~~~~~~~~~~~~~~~~~-~~---------------------~~~~~~~~~~l~s~s-~d~~i~iWd~~~~  128 (203)
                           ...+..+++++++..++..... +.                     .+.|+|+|+.++.+. .+++|.+||+.++
T Consensus       225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence                 2236667777777655443221 11                     135667777554444 5777777877777


Q ss_pred             ceEEEEeccceE
Q psy8891         129 EKVRDIELHGKI  140 (203)
Q Consensus       129 ~~~~~~~~~~~v  140 (203)
                      +.+..+.....+
T Consensus       305 ~~~~~~~~~~~~  316 (353)
T 3vgz_A          305 KVVKTFDTPTHP  316 (353)
T ss_dssp             EEEEEEECCSEE
T ss_pred             eEEEEEecCCCC
Confidence            666555444333

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.54  E-value=4.8e-12  Score=97.78  Aligned_cols=180  Identities=11%  Similarity=0.072  Sum_probs=106.8

Q ss_pred             ceEEcCCCCEEEEEeC---CCcEEEEeCCCCCeE--Ee---cCcCceEEEEeCCCCEEEEec-CCCeEEEEECCCceE--
Q psy8891           2 CAKFLGDPTKVVSGSC---DRTLKIWDLRSTETK--FA---GSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEK--   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~---D~~v~lwdl~~~~~~--~~---~~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~~~~~--   70 (203)
                      .++|+|||+ |++++.   ++.|++||+.+++..  ..   .......++++|+++.|++++ .++.|++||+.....  
T Consensus        44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~  122 (347)
T 3hfq_A           44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT  122 (347)
T ss_dssp             CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence            478999999 666554   689999999765421  11   122234477899999888887 789999999963222  


Q ss_pred             -EEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC-CCceEE--EEec--cceEEEEE
Q psy8891          71 -VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR-AEEKVR--DIEL--HGKITSLD  144 (203)
Q Consensus        71 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~-~~~~~~--~~~~--~~~v~~~~  144 (203)
                       +..+...+.      .|...   ........+.|+|+|+.+++...+++|++||+. +++...  .+..  ...+..+.
T Consensus       123 ~~~~~~~~~~------~p~~~---~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~  193 (347)
T 3hfq_A          123 LTDTVQHSGH------GPRPE---QDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV  193 (347)
T ss_dssp             EEEEEECCCC------CSSTT---CSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred             ecceeecCCC------CCCcc---ccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence             222111100      00000   000011235678888866666678899999998 554322  1222  12466677


Q ss_pred             ecCCcE-EEEeecC--e-----------e--EE-------------eeeEEEEEEcCCCEE-EEecCCCcEEEEeCC
Q psy8891         145 LSKGKY-YFVFAEG--F-----------K--VQ-------------CDFTRAVFVVDDDYV-AVGSIDGNIYVWDCN  191 (203)
Q Consensus       145 ~~~~~~-~~~~~~~--~-----------~--~~-------------~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~  191 (203)
                      ++++.. +++....  .           .  ..             .....+.++|++++| +++..++.|.+||++
T Consensus       194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            777643 3332211  0           0  00             012346789999977 556679999999987

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=2.7e-12  Score=100.39  Aligned_cols=196  Identities=13%  Similarity=0.134  Sum_probs=111.1

Q ss_pred             eEEcCCCCEEEEEe----------CCCcEEEEeCCCCCeEEe---c------CcCceEEEEeCCCCEEEEecC--CCeEE
Q psy8891           3 AKFLGDPTKVVSGS----------CDRTLKIWDLRSTETKFA---G------SSCNDLVTYDGAGTTIISGHF--DKKVR   61 (203)
Q Consensus         3 ~~~~~~~~~l~t~s----------~D~~v~lwdl~~~~~~~~---~------~~~~~~~~~~~~~~~l~s~~~--D~~i~   61 (203)
                      ++|+||+++|+.++          .|++|.+||+.+.+....   .      .....-+.++|++++|+++..  +++|.
T Consensus        55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~  134 (361)
T 2oiz_A           55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIG  134 (361)
T ss_dssp             EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEE
T ss_pred             eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEE
Confidence            68999999999887          367899999987554211   1      011223678999999988864  68999


Q ss_pred             EEECCCceEEEe-eeeCCe----------EEEEEecCCCceEEEec-CCceE------------------EEEcCCCCEE
Q psy8891          62 FWDFRAEEKVRD-IELHGK----------ITSLDLSKGTETKFAGS-SCNDL------------------VTYDGAGTTI  111 (203)
Q Consensus        62 vwd~~~~~~~~~-~~~~~~----------v~~~~~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~l  111 (203)
                      +||+.+++.+.+ +...+.          ..-+.+.+++..++... ..+.+                  +..++++..+
T Consensus       135 v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  214 (361)
T 2oiz_A          135 IVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKA  214 (361)
T ss_dssp             EEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEE
T ss_pred             EEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEE
Confidence            999999888776 433221          01122333333222111 00100                  0112344556


Q ss_pred             EEeeCCCeEEEEECCCCce--EEEEec------------cc-eEEEEEecCCcE-------------------EEEe-e-
Q psy8891         112 ISGHFDKKVRFWDFRAEEK--VRDIEL------------HG-KITSLDLSKGKY-------------------YFVF-A-  155 (203)
Q Consensus       112 ~s~s~d~~i~iWd~~~~~~--~~~~~~------------~~-~v~~~~~~~~~~-------------------~~~~-~-  155 (203)
                      +..+.+++|.++|+..+..  ...+..            .+ +...+.-..+..                   +.+. . 
T Consensus       215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~  294 (361)
T 2oiz_A          215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK  294 (361)
T ss_dssp             EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred             EEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence            6666777788888754321  111110            00 001121111111                   1110 0 


Q ss_pred             cCeeE-----EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCc--eeeeeec
Q psy8891         156 EGFKV-----QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE--QVEAVLK  200 (203)
Q Consensus       156 ~~~~~-----~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~--~~~~~~~  200 (203)
                      .+..+     .. ...+.++|++++|+++.. ++|.+||+.++  ++++++.
T Consensus       295 t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~  344 (361)
T 2oiz_A          295 TKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE  344 (361)
T ss_dssp             TTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET
T ss_pred             CCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec
Confidence            01000     11 346778999999998887 99999999999  9998873

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.52  E-value=2.9e-12  Score=108.98  Aligned_cols=91  Identities=7%  Similarity=0.127  Sum_probs=68.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcC----ceE--EEEeCCCCEEEEecCC---------CeEEEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSC----NDL--VTYDGAGTTIISGHFD---------KKVRFWD   64 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~----~~~--~~~~~~~~~l~s~~~D---------~~i~vwd   64 (203)
                      +++|+||++.++++  |++|++||+.+++..  +.....    ...  +.++||++.|+.++.+         +.+.+||
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d   98 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence            68999999988886  999999999987643  222211    112  6789999999998877         5567999


Q ss_pred             CCCceEEEeeeeCCeEEEEEecCCCceEEE
Q psy8891          65 FRAEEKVRDIELHGKITSLDLSKGTETKFA   94 (203)
Q Consensus        65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (203)
                      +.+++........+.+...+|+|++..++.
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPdG~~la~  128 (740)
T 4a5s_A           99 LNKRQLITEERIPNNTQWVTWSPVGHKLAY  128 (740)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEE
T ss_pred             CCCCcEEEcccCCCcceeeEECCCCCEEEE
Confidence            999886543333466889999999887653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.48  E-value=5.3e-12  Score=111.05  Aligned_cols=93  Identities=9%  Similarity=0.011  Sum_probs=68.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCC----------eEEEEECCCc
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDK----------KVRFWDFRAE   68 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~----------~i~vwd~~~~   68 (203)
                      +++|+|||++|++++.|++|++||+.+++....   +......+.|+|++++|++++.++          .|++||+.++
T Consensus       383 ~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          383 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence            578999999999999999999999988764321   222234578999999998887654          9999999887


Q ss_pred             eEEEeeeeC-CeEEEEEecCCCceEEEe
Q psy8891          69 EKVRDIELH-GKITSLDLSKGTETKFAG   95 (203)
Q Consensus        69 ~~~~~~~~~-~~v~~~~~~~~~~~~~~~   95 (203)
                      + +..+..+ ..+..++|++++..++..
T Consensus       463 ~-~~~l~~~~~~~~~~~~spdG~~l~~~  489 (1045)
T 1k32_A          463 K-IFAATTENSHDYAPAFDADSKNLYYL  489 (1045)
T ss_dssp             E-EEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred             c-EEEeeCCCcccCCceEcCCCCEEEEE
Confidence            7 4444333 446677777777655443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.48  E-value=9.3e-12  Score=96.74  Aligned_cols=161  Identities=9%  Similarity=0.082  Sum_probs=99.8

Q ss_pred             ceEEcCCCCEEEEEe-CCCcEEEEeCCCCC-------e-------EEe--cCcCceEEEEeCCCCEEEEec-CCCeEEEE
Q psy8891           2 CAKFLGDPTKVVSGS-CDRTLKIWDLRSTE-------T-------KFA--GSSCNDLVTYDGAGTTIISGH-FDKKVRFW   63 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s-~D~~v~lwdl~~~~-------~-------~~~--~~~~~~~~~~~~~~~~l~s~~-~D~~i~vw   63 (203)
                      +++|+|||++|+.++ .++.|++|++....       .       ...  .......+.++|+++.|+.++ .++.|.+|
T Consensus       159 ~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  238 (361)
T 3scy_A          159 CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF  238 (361)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence            378999999765554 58999999887422       1       111  111223467899999777666 69999999


Q ss_pred             ECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC--CeEEEEECC--CCce--EEEEecc
Q psy8891          64 DFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD--KKVRFWDFR--AEEK--VRDIELH  137 (203)
Q Consensus        64 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--~~i~iWd~~--~~~~--~~~~~~~  137 (203)
                      |+.+++....       ..+...+...      .....+.|+|+|++|+.+..+  ++|++|++.  +++.  +..+...
T Consensus       239 ~~~~g~~~~~-------~~~~~~~~~~------~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g  305 (361)
T 3scy_A          239 RYADGMLDEI-------QTVAADTVNA------QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG  305 (361)
T ss_dssp             EEETTEEEEE-------EEEESCSSCC------CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EecCCceEEe-------EEEecCCCCC------CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC
Confidence            9986643211       1111111100      001235688899888776665  899999986  3332  1111110


Q ss_pred             ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec-CCCcEEEE--eCCCceeeeee
Q psy8891         138 GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS-IDGNIYVW--DCNTEQVEAVL  199 (203)
Q Consensus       138 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~v~~w--d~~~~~~~~~~  199 (203)
                      .                        ....+.++|++++|++++ .++.|.+|  |..+|++....
T Consensus       306 ~------------------------~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          306 I------------------------HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             S------------------------CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred             C------------------------CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence            0                        122456789999888877 67899995  55678776654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.47  E-value=4.1e-11  Score=90.38  Aligned_cols=166  Identities=11%  Similarity=0.129  Sum_probs=114.8

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc--CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC--CeE
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS--CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH--GKI   80 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~--~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~--~~v   80 (203)
                      ..++.|++++.|+.|++||.++++..  +....  ....+.+.|+++.+++  .++.|..||. +++.++.+...  ..+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            35688999999999999999887653  22221  2234667899998884  5788999998 78888887754  357


Q ss_pred             EEEEecCCCceEEEecC-CceEEEEc----------------------------CCCCEEEEeeCCCeEEEEECCCCceE
Q psy8891          81 TSLDLSKGTETKFAGSS-CNDLVTYD----------------------------GAGTTIISGHFDKKVRFWDFRAEEKV  131 (203)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~~~~~----------------------------~~~~~l~s~s~d~~i~iWd~~~~~~~  131 (203)
                      .+..+.+++..+++... ...+..++                            ++|+++++...+++|..||.. |+.+
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            77777777776666544 33333333                            345566666666777777766 6666


Q ss_pred             EEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         132 RDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       132 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .++.....+.                        .+...+++..+++++.++.|..+|..+|+++-++.
T Consensus       159 w~~~~~~~~~------------------------~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          159 NSVKLSGTPF------------------------SSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEEECSSCCC------------------------EEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEEECCCCcc------------------------ceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            5554432111                        12334688899998888899999999999987764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.46  E-value=5.8e-13  Score=110.06  Aligned_cols=156  Identities=13%  Similarity=0.054  Sum_probs=101.1

Q ss_pred             eEEcCCCCE-EEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCC----CeEEEEECCCceEEEeeeeC
Q psy8891           3 AKFLGDPTK-VVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFD----KKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         3 ~~~~~~~~~-l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D----~~i~vwd~~~~~~~~~~~~~   77 (203)
                      .+|+||++. +++++.++.+.+||+.+++...........+.++|||+.|++++.|    +.|++||+.+++.. .+..+
T Consensus       115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~  193 (582)
T 3o4h_A          115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSG  193 (582)
T ss_dssp             EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCS
T ss_pred             eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecC
Confidence            468888863 3343444455599998765422111111456789999999988887    78999999887654 33322


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC--eEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEE
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK--KVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFV  153 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~  153 (203)
                       +.+..                   ..|+|||+.|+++..++  +|++||+.+++.. .+..+. .+..+.         
T Consensus       194 ~~~~~~-------------------~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~---------  244 (582)
T 3o4h_A          194 EGSFSS-------------------ASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR---------  244 (582)
T ss_dssp             SCEEEE-------------------EEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC---------
T ss_pred             CCcccc-------------------ceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh---------
Confidence             33333                   45777888899888888  8999999987764 222111 010000         


Q ss_pred             eecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         154 FAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                             ........++||+..+++++.|+++++|++  |++++
T Consensus       245 -------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~  279 (582)
T 3o4h_A          245 -------PTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE  279 (582)
T ss_dssp             -------CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred             -------hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence                   001123347789988999999999999998  66654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.42  E-value=1.3e-10  Score=90.79  Aligned_cols=178  Identities=15%  Similarity=0.075  Sum_probs=110.7

Q ss_pred             eEEcCCCCEEEEEeC-CCc--EEEEeCCCCCeEEe--cCcCc-eEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           3 AKFLGDPTKVVSGSC-DRT--LKIWDLRSTETKFA--GSSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~-D~~--v~lwdl~~~~~~~~--~~~~~-~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      .+|+|||++|+.++. ++.  |.+||+.+++....  ..... ....|+|+++.|+.++.++.|++||+.+++.......
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            679999999998887 674  88889887654322  11111 1247899999999999999999999998876544443


Q ss_pred             CCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEE----------------------eeCCCeEEEEECCCCceEEE
Q psy8891          77 HGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS----------------------GHFDKKVRFWDFRAEEKVRD  133 (203)
Q Consensus        77 ~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----------------------~s~d~~i~iWd~~~~~~~~~  133 (203)
                      +.. +....+                 .++++++.++.                      ...+..|.+||+.+++....
T Consensus       121 ~~~~~~~~~~-----------------~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l  183 (388)
T 3pe7_A          121 PAEWVGYGTW-----------------VANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI  183 (388)
T ss_dssp             CTTEEEEEEE-----------------EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE
T ss_pred             hhhcccccce-----------------eECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe
Confidence            322 211111                 12344444442                      33457899999998876544


Q ss_pred             EeccceEEEEEecC-CcEEEEe-ecC-----e-eE----------------E--eeeEEEEEEcCCCEEEEecC-CC---
Q psy8891         134 IELHGKITSLDLSK-GKYYFVF-AEG-----F-KV----------------Q--CDFTRAVFVVDDDYVAVGSI-DG---  183 (203)
Q Consensus       134 ~~~~~~v~~~~~~~-~~~~~~~-~~~-----~-~~----------------~--~~~~~~~~~~~~~~l~s~s~-d~---  183 (203)
                      ......+..+.+++ +...++. ..+     . .+                .  ..+....++||++.|+..+. ++   
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (388)
T 3pe7_A          184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPD  263 (388)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred             ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence            44444566677777 4433321 110     0 00                0  12334578999997765443 22   


Q ss_pred             -cEEEEeCCCceeee
Q psy8891         184 -NIYVWDCNTEQVEA  197 (203)
Q Consensus       184 -~v~~wd~~~~~~~~  197 (203)
                       .|++||+.+++...
T Consensus       264 ~~l~~~d~~~g~~~~  278 (388)
T 3pe7_A          264 RFIYSADPETLENRQ  278 (388)
T ss_dssp             EEEEEECTTTCCEEE
T ss_pred             ceEEEEecCCCceEE
Confidence             39999999887543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.40  E-value=5.7e-11  Score=92.76  Aligned_cols=173  Identities=8%  Similarity=0.055  Sum_probs=101.0

Q ss_pred             ceEEcCCCCE--EEEEe-------------CCCcEEEEeCCC-CCeE--Ee-----cCcCceEEEEeCCCCEEEEecC-C
Q psy8891           2 CAKFLGDPTK--VVSGS-------------CDRTLKIWDLRS-TETK--FA-----GSSCNDLVTYDGAGTTIISGHF-D   57 (203)
Q Consensus         2 ~~~~~~~~~~--l~t~s-------------~D~~v~lwdl~~-~~~~--~~-----~~~~~~~~~~~~~~~~l~s~~~-D   57 (203)
                      +++|+|||++  +++++             .++++++|++.. ++..  ..     .......+.++|+++.|++++. +
T Consensus        87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~  166 (365)
T 1jof_A           87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA  166 (365)
T ss_dssp             GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC
Confidence            3678999994  55664             699999999974 4321  11     1222345778999998887654 6


Q ss_pred             CeEEEEECC-CceEE--Eeeee---CCeEEEEEecCCCceEEEecC-C--------------------------------
Q psy8891          58 KKVRFWDFR-AEEKV--RDIEL---HGKITSLDLSKGTETKFAGSS-C--------------------------------   98 (203)
Q Consensus        58 ~~i~vwd~~-~~~~~--~~~~~---~~~v~~~~~~~~~~~~~~~~~-~--------------------------------   98 (203)
                      +.|++||+. +++..  ..+..   ...+..++++|++..++.... .                                
T Consensus       167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~  246 (365)
T 1jof_A          167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR  246 (365)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred             CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCc
Confidence            899999998 56532  23321   234666777766654332110 0                                


Q ss_pred             ---------ceEEE-EcCCCCEEEEeeCCC------eEEEEECC-CCceEEEEeccceEEEEEecCCcEEEEeecCeeEE
Q psy8891          99 ---------NDLVT-YDGAGTTIISGHFDK------KVRFWDFR-AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQ  161 (203)
Q Consensus        99 ---------~~~~~-~~~~~~~l~s~s~d~------~i~iWd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  161 (203)
                               ...+. |+|+|++|+++..+.      +|++|++. +++.......      +....              
T Consensus       247 ~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~------~~~~~--------------  306 (365)
T 1jof_A          247 DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL------SPTPT--------------  306 (365)
T ss_dssp             CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE------EECSS--------------
T ss_pred             ccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee------eecCC--------------
Confidence                     11234 667776666554322      67777764 3332211000      00000              


Q ss_pred             eeeEEEEEEc---CCCEEEEecCC-CcEEEEeCCCce
Q psy8891         162 CDFTRAVFVV---DDDYVAVGSID-GNIYVWDCNTEQ  194 (203)
Q Consensus       162 ~~~~~~~~~~---~~~~l~s~s~d-~~v~~wd~~~~~  194 (203)
                      .....++++|   ++++|+++..+ ++|++|+.+...
T Consensus       307 ~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          307 SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            0012345678   79999998874 899999987653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.40  E-value=7.5e-10  Score=83.18  Aligned_cols=191  Identities=10%  Similarity=0.149  Sum_probs=119.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-EecC-------cCceEEEE-eCCCCEEEEecC-CCeEEEEECCCceEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAGS-------SCNDLVTY-DGAGTTIISGHF-DKKVRFWDFRAEEKV   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~~-------~~~~~~~~-~~~~~~l~s~~~-D~~i~vwd~~~~~~~   71 (203)
                      ++++++++..+++.+.++.|++||....... +...       .....+++ +++++.+++... ++.|++|| .+++.+
T Consensus        34 ~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~  112 (286)
T 1q7f_A           34 GVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFV  112 (286)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEE
T ss_pred             eEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEE
Confidence            4678999998898889999999998743222 1110       11233556 456655555533 89999999 556555


Q ss_pred             EeeeeC--CeEEEEEecCCCceEEEecCCc------------------------eEEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891          72 RDIELH--GKITSLDLSKGTETKFAGSSCN------------------------DLVTYDGAGTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        72 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~s~s~d~~i~iWd~  125 (203)
                      ..+...  ..+..+++.+++...++.....                        ..++++++|+++++...++.|++||.
T Consensus       113 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~  192 (286)
T 1q7f_A          113 RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY  192 (286)
T ss_dssp             EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET
T ss_pred             EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC
Confidence            554321  3467777777665333322111                        22566778887777777899999997


Q ss_pred             CCCceEEEEecc---ceEEEEEecCCcEEEEeecCe--eEE-------------e-----eeEEEEEEcCCCEEEEecCC
Q psy8891         126 RAEEKVRDIELH---GKITSLDLSKGKYYFVFAEGF--KVQ-------------C-----DFTRAVFVVDDDYVAVGSID  182 (203)
Q Consensus       126 ~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~--~~~-------------~-----~~~~~~~~~~~~~l~s~s~d  182 (203)
                      . ++.+..+...   ..+..+.++++..+++...+.  .+.             .     ....+++.|+++++++ +.|
T Consensus       193 ~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~  270 (286)
T 1q7f_A          193 E-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD  270 (286)
T ss_dssp             T-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT
T ss_pred             C-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC
Confidence            4 5555555443   346777777655544443211  110             0     1234667888887777 579


Q ss_pred             CcEEEEeCCCcee
Q psy8891         183 GNIYVWDCNTEQV  195 (203)
Q Consensus       183 ~~v~~wd~~~~~~  195 (203)
                      ++|++|+.....+
T Consensus       271 ~~v~v~~~~~~~p  283 (286)
T 1q7f_A          271 YRLYIYRYVQLAP  283 (286)
T ss_dssp             TEEEEEECSCCCC
T ss_pred             CeEEEEEcccccc
Confidence            9999999876544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.38  E-value=1.3e-10  Score=90.79  Aligned_cols=178  Identities=11%  Similarity=0.007  Sum_probs=110.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcC-c--eEEEEeCCCCEEEE----------------------e
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSC-N--DLVTYDGAGTTIIS----------------------G   54 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~-~--~~~~~~~~~~~l~s----------------------~   54 (203)
                      +.+|+||++.|+.++.++.|++||+.+++...  ..... .  .....++++..++.                      .
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            46899999999999999999999999876432  22111 1  11234788888763                      3


Q ss_pred             cCCCeEEEEECCCceEEEeeeeCCeEEEEEecC-CCceEEEecC------C------------------------ceEEE
Q psy8891          55 HFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK-GTETKFAGSS------C------------------------NDLVT  103 (203)
Q Consensus        55 ~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~------~------------------------~~~~~  103 (203)
                      +.+..|.+||+.+++..........+..+.++| ++..++....      .                        .....
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~  244 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF  244 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE
T ss_pred             CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce
Confidence            456789999999887654444555677788888 7665443211      0                        01136


Q ss_pred             EcCCCCEEEEeeCC-----CeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEE
Q psy8891         104 YDGAGTTIISGHFD-----KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAV  178 (203)
Q Consensus       104 ~~~~~~~l~s~s~d-----~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  178 (203)
                      |+|+|+.|+..+.+     ..|.+||+.+++........... .....                 .....++||++.|+.
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~~~-----------------~~~~~~spdg~~l~~  306 (388)
T 3pe7_A          245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACS-HLMSN-----------------YDGSLMVGDGSDAPV  306 (388)
T ss_dssp             ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEE-EEEEC-----------------TTSSEEEEEECCC--
T ss_pred             ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCce-eeeec-----------------CCCCeEccCCCccee
Confidence            88999877665442     23999999887643222221100 00000                 011246788877664


Q ss_pred             e---------cCCCcEEEEeCCCceeee
Q psy8891         179 G---------SIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       179 ~---------s~d~~v~~wd~~~~~~~~  197 (203)
                      .         ..+..|++||+.++++..
T Consensus       307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~  334 (388)
T 3pe7_A          307 DVQDDSGYKIENDPFLYVFNMKNGTQHR  334 (388)
T ss_dssp             ----------CCCCEEEEEETTTTEEEE
T ss_pred             EeeeccccccCCCCEEEEEeccCCceEE
Confidence            3         456789999999887644

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.36  E-value=2.2e-11  Score=102.83  Aligned_cols=113  Identities=6%  Similarity=-0.035  Sum_probs=75.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc-------------------CceEEEEeCCCCEEEEecCCC--
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS-------------------CNDLVTYDGAGTTIISGHFDK--   58 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~-------------------~~~~~~~~~~~~~l~s~~~D~--   58 (203)
                      +++|||||++|+.++. ++|++||+.+++..  .....                   ....+.|+||++.|++++.|+  
T Consensus       118 ~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~  196 (723)
T 1xfd_A          118 YAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR  196 (723)
T ss_dssp             BCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred             ccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCc
Confidence            4789999999999986 89999999875532  21111                   113578999999999987653  


Q ss_pred             --------------------------------eEEEEECCCceEEEeeeeC-------CeEEEEEecCCCceEEEecCCc
Q psy8891          59 --------------------------------KVRFWDFRAEEKVRDIELH-------GKITSLDLSKGTETKFAGSSCN   99 (203)
Q Consensus        59 --------------------------------~i~vwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~   99 (203)
                                                      .|++||+.+++....+..+       ..+..                 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~-----------------  259 (723)
T 1xfd_A          197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM-----------------  259 (723)
T ss_dssp             SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE-----------------
T ss_pred             cceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEE-----------------
Confidence                                            6777777666543333221       12333                 


Q ss_pred             eEEEEcCCCCEEEEee----CCCeEEEEECCCCceEEEE
Q psy8891         100 DLVTYDGAGTTIISGH----FDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus       100 ~~~~~~~~~~~l~s~s----~d~~i~iWd~~~~~~~~~~  134 (203)
                        +.|+|||+.|++.+    .+..|++||+.+++....+
T Consensus       260 --~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~  296 (723)
T 1xfd_A          260 --VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (723)
T ss_dssp             --EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             --EEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence              45666776665554    2368999999988765433

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.35  E-value=1.1e-09  Score=84.96  Aligned_cols=186  Identities=8%  Similarity=0.035  Sum_probs=104.4

Q ss_pred             ceEEcCCCCEEEEEeCC----CcEEEEeCCC--CCeE--E--e-cCcCceEEEEeCCCCEEEEec-CCCeEEEEECCCce
Q psy8891           2 CAKFLGDPTKVVSGSCD----RTLKIWDLRS--TETK--F--A-GSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEE   69 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D----~~v~lwdl~~--~~~~--~--~-~~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~~~~   69 (203)
                      .++|+||+++|++++.+    +.|++|++..  ++..  .  . .......+.+  +++.|++++ .++.|.+|++....
T Consensus        54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g  131 (361)
T 3scy_A           54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDG  131 (361)
T ss_dssp             SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTS
T ss_pred             eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCC
Confidence            47899999999999986    7999999865  3321  1  1 1111122333  777777666 68899999997654


Q ss_pred             EEEeeeeCCeEEEEEecCCCceE-EEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCCCce------E------EE--
Q psy8891          70 KVRDIELHGKITSLDLSKGTETK-FAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEK------V------RD--  133 (203)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~~~~------~------~~--  133 (203)
                      .+..+..     .+.....+... .........+.|+|+|+.|+.++ .++.|++|++.....      +      ..  
T Consensus       132 ~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~  206 (361)
T 3scy_A          132 ALLPASD-----VIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK  206 (361)
T ss_dssp             CBCSCSE-----EEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred             cCcccce-----eEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence            3322110     00000000000 00000012356888888666555 478999998875431      1      11  


Q ss_pred             EeccceEEEEEecCCcE-EEEeecC-eeE------------Ee----------eeEEEEEEcCCCEEEEecC--CCcEEE
Q psy8891         134 IELHGKITSLDLSKGKY-YFVFAEG-FKV------------QC----------DFTRAVFVVDDDYVAVGSI--DGNIYV  187 (203)
Q Consensus       134 ~~~~~~v~~~~~~~~~~-~~~~~~~-~~~------------~~----------~~~~~~~~~~~~~l~s~s~--d~~v~~  187 (203)
                      ......+..+.++++.. +++.... ..+            ..          ....+.++|++++|+.+..  ++.|.+
T Consensus       207 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v  286 (361)
T 3scy_A          207 VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI  286 (361)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred             cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence            22223466777777643 3333211 000            00          0125678999998866665  489999


Q ss_pred             EeCC--Cce
Q psy8891         188 WDCN--TEQ  194 (203)
Q Consensus       188 wd~~--~~~  194 (203)
                      |+++  +++
T Consensus       287 ~~~~~~~g~  295 (361)
T 3scy_A          287 FKVDETNGT  295 (361)
T ss_dssp             EEECTTTCC
T ss_pred             EEEcCCCCc
Confidence            9985  454

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.34  E-value=9.2e-11  Score=91.57  Aligned_cols=160  Identities=9%  Similarity=0.055  Sum_probs=97.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCC-CCCeE--Ee--cCcCceEEEEeCCCC--EEEEec-------------CCCeEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLR-STETK--FA--GSSCNDLVTYDGAGT--TIISGH-------------FDKKVR   61 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~-~~~~~--~~--~~~~~~~~~~~~~~~--~l~s~~-------------~D~~i~   61 (203)
                      .++|+||+++|++++.+ +|++||+. +++..  ..  .......+.++|+++  ++++++             .+++++
T Consensus        44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~  122 (365)
T 1jof_A           44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN  122 (365)
T ss_dssp             EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred             EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence            47899999999999998 99999996 54432  11  111111245788888  456664             799999


Q ss_pred             EEECCC-ceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CCeEEEEECC-CCceEEEEeccc
Q psy8891          62 FWDFRA-EEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DKKVRFWDFR-AEEKVRDIELHG  138 (203)
Q Consensus        62 vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~i~iWd~~-~~~~~~~~~~~~  138 (203)
                      +|++.. ++....+..      +... .       ......+.|+|+|++|+++.. +++|++||+. +++......   
T Consensus       123 v~~~~~~g~~~~~~~~------~~~~-~-------~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~---  185 (365)
T 1jof_A          123 VFSVSETGKLEKNVQN------YEYQ-E-------NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS---  185 (365)
T ss_dssp             EEEECTTCCEEEEEEE------EECC-T-------TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---
T ss_pred             EEccCCCCcCcceEee------EEeC-C-------CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee---
Confidence            999974 444322221      0000 0       001122457788888877654 6799999998 665421110   


Q ss_pred             eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC-CCcEEEEeCC--Ccee
Q psy8891         139 KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI-DGNIYVWDCN--TEQV  195 (203)
Q Consensus       139 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~v~~wd~~--~~~~  195 (203)
                          +....        .+    .....+.|+|+++++++++. +++|.+|+.+  +|++
T Consensus       186 ----~~~~~--------~g----~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  229 (365)
T 1jof_A          186 ----VDAPD--------PG----DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             ----EECSS--------TT----CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             ----EecCC--------CC----CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence                11000        00    01234567899998877765 7899999765  5654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.33  E-value=3e-11  Score=101.12  Aligned_cols=163  Identities=9%  Similarity=-0.010  Sum_probs=99.8

Q ss_pred             ceEEcCCCCEEEEEeCC----------CcEEEEeCCC------CCeEEec---CcCceEEEEeCCCCEEEEecCC-----
Q psy8891           2 CAKFLGDPTKVVSGSCD----------RTLKIWDLRS------TETKFAG---SSCNDLVTYDGAGTTIISGHFD-----   57 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D----------~~v~lwdl~~------~~~~~~~---~~~~~~~~~~~~~~~l~s~~~D-----   57 (203)
                      +++|+|||+.|++++.|          .+|++||+.+      ++.....   ......+.++||++.|+.++.+     
T Consensus       134 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~  213 (662)
T 3azo_A          134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP  213 (662)
T ss_dssp             EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred             CcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCC
Confidence            46899999999999887          5899999987      4432211   1112235789999999888755     


Q ss_pred             ---CeEEEEECC-Cc---eEEEeeee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC--eEEEEECCC
Q psy8891          58 ---KKVRFWDFR-AE---EKVRDIEL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK--KVRFWDFRA  127 (203)
Q Consensus        58 ---~~i~vwd~~-~~---~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--~i~iWd~~~  127 (203)
                         ..|++||+. ++   +....... ...+..                   ..|+|||++++++..++  .|.+||+.+
T Consensus       214 ~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~-------------------~~~spdg~l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          214 WEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ-------------------AEWAPDGSLIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             TTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE-------------------EEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred             CCCcEEEEEEECCCCcccccEEeCCCCCceEcc-------------------eEECCCCeEEEEECCCCCeEEEEEECCC
Confidence               379999998 45   22222222 123333                   35677778777888888  566666655


Q ss_pred             CceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEE--eCCCceeeeeec
Q psy8891         128 EEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVW--DCNTEQVEAVLK  200 (203)
Q Consensus       128 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~w--d~~~~~~~~~~~  200 (203)
                      ++.......+..+....+++               ......++++++++++++. +.++||  |..+++ ++.+.
T Consensus       275 ~~~~~l~~~~~~~~~p~w~~---------------~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~  332 (662)
T 3azo_A          275 GAATQLCRREEEFAGPLWTP---------------GMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA  332 (662)
T ss_dssp             CCEEESSCCSSBSSCCCCST---------------TCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred             CceeecccccccccCccccc---------------cCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence            55322111111110000000               0123456678889999988 999999  666565 44443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.33  E-value=9.3e-12  Score=105.20  Aligned_cols=69  Identities=13%  Similarity=0.023  Sum_probs=53.6

Q ss_pred             ceEEcCCCCEEEEEeC---------CCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891           2 CAKFLGDPTKVVSGSC---------DRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~---------D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~   70 (203)
                      +++|||||++|++++.         |++|++||+.+++..  .........+.|+|||+.|+++. |+.|++||+.+++.
T Consensus        64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~  142 (719)
T 1z68_A           64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP  142 (719)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred             eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence            5789999999999876         799999999876541  11112234478999999999885 78999999988765


Q ss_pred             E
Q psy8891          71 V   71 (203)
Q Consensus        71 ~   71 (203)
                      .
T Consensus       143 ~  143 (719)
T 1z68_A          143 F  143 (719)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.33  E-value=2.4e-09  Score=82.36  Aligned_cols=191  Identities=11%  Similarity=0.059  Sum_probs=122.6

Q ss_pred             ceEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCCeEEe-c-C--cCceEEEEeCCCCEEEE
Q psy8891           2 CAKFLGDPTKVVSGSCD------------------------RTLKIWDLRSTETKFA-G-S--SCNDLVTYDGAGTTIIS   53 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D------------------------~~v~lwdl~~~~~~~~-~-~--~~~~~~~~~~~~~~l~s   53 (203)
                      +++++|+|+.+++.+.+                        ++|.+||..+++.... . .  ....-++++++++++++
T Consensus        28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~  107 (329)
T 3fvz_A           28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVT  107 (329)
T ss_dssp             EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEE
T ss_pred             EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEE
Confidence            57899999999998887                        4799999987664322 1 1  12234678899998899


Q ss_pred             ecCCCeEEEEECCCce-EEEeeee----------CCeEEEEEecC-CCceEEEec-CCce--------------------
Q psy8891          54 GHFDKKVRFWDFRAEE-KVRDIEL----------HGKITSLDLSK-GTETKFAGS-SCND--------------------  100 (203)
Q Consensus        54 ~~~D~~i~vwd~~~~~-~~~~~~~----------~~~v~~~~~~~-~~~~~~~~~-~~~~--------------------  100 (203)
                      ...++.|++||..... .+..+..          -.....+++.+ ++...++.. ....                    
T Consensus       108 d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~  187 (329)
T 3fvz_A          108 DVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSG  187 (329)
T ss_dssp             ETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCS
T ss_pred             ECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCC
Confidence            8899999999986542 3333321          02467778887 444443332 2222                    


Q ss_pred             ------------EEEEcCC-CCEEEEeeCCCeEEEEECCCCceEEEEecc---ceEEEEEecCCcEEEEee---------
Q psy8891         101 ------------LVTYDGA-GTTIISGHFDKKVRFWDFRAEEKVRDIELH---GKITSLDLSKGKYYFVFA---------  155 (203)
Q Consensus       101 ------------~~~~~~~-~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~---------  155 (203)
                                  -++++|+ +.++++...+++|++||..+++.+..+...   ..+..+.++++..+....         
T Consensus       188 ~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~  267 (329)
T 3fvz_A          188 SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEP  267 (329)
T ss_dssp             SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCC
T ss_pred             CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCC
Confidence                        2456676 666666677889999999888887776432   234555555521111110         


Q ss_pred             ---------cCeeE---------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         156 ---------EGFKV---------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       156 ---------~~~~~---------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                               .+...         ......++++|++..+++...++.|++|++..
T Consensus       268 ~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          268 VQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             cEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                     01000         01134567889998888999999999999864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.31  E-value=1.4e-09  Score=89.92  Aligned_cols=178  Identities=15%  Similarity=0.123  Sum_probs=115.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECC--CceEEEeeeeCCeEEE
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR--AEEKVRDIELHGKITS   82 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~--~~~~~~~~~~~~~v~~   82 (203)
                      +.+..+++...+++|.++|..+.+...  ........+.++|+++++++++.|+.|.+||+.  +.+.+.++........
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~  244 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  244 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence            344567888899999999999876532  222222346789999999999999999999996  6666666654333444


Q ss_pred             EEecCCCceEEEecCCceEEEEc-CCCCEEEEeeC-CCeEEEEECCCCceEEEEeccc------------eEEEEEecCC
Q psy8891          83 LDLSKGTETKFAGSSCNDLVTYD-GAGTTIISGHF-DKKVRFWDFRAEEKVRDIELHG------------KITSLDLSKG  148 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~-d~~i~iWd~~~~~~~~~~~~~~------------~v~~~~~~~~  148 (203)
                      +++++                |. |+|++++.+.+ +++|.++|..+.+.++.+...+            .+..+..+..
T Consensus       245 ia~s~----------------~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~  308 (567)
T 1qks_A          245 IETSK----------------MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY  308 (567)
T ss_dssp             EEECC----------------STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred             eEEcc----------------ccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC
Confidence            44431                00 46667766655 5899999999988888776432            2344443332


Q ss_pred             cEEEE-eec--CeeEEe-----------------eeEEEEEEcCCCEEEEec-CCCcEEEEeCCCceeeeeec
Q psy8891         149 KYYFV-FAE--GFKVQC-----------------DFTRAVFVVDDDYVAVGS-IDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       149 ~~~~~-~~~--~~~~~~-----------------~~~~~~~~~~~~~l~s~s-~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ...+. ...  +.....                 ......|+|++++|+++. .++.|.++|+.+++++..++
T Consensus       309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~  381 (567)
T 1qks_A          309 RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  381 (567)
T ss_dssp             SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence            21111 110  110000                 111345889999876655 68899999999999888764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.31  E-value=8.9e-11  Score=91.78  Aligned_cols=191  Identities=10%  Similarity=-0.089  Sum_probs=112.9

Q ss_pred             ceEEcCCCCEEEEEeCC---CcEEEEeCCCCCeEEec--CcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee
Q psy8891           2 CAKFLGDPTKVVSGSCD---RTLKIWDLRSTETKFAG--SSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D---~~v~lwdl~~~~~~~~~--~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      +++|+|||++|+..+.+   ..|.+||+.+++.....  ... .....|+|+++.|+.++.++.|++||+..++......
T Consensus        40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~  119 (396)
T 3c5m_A           40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT  119 (396)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe
Confidence            46799999998776543   46888898876543211  111 1225689999999999999999999998876544333


Q ss_pred             eCCeEEEEEecCCCceEEEecCCceE------EEEcCCCCEEEEe-----eCCCeEEEEECCCCceEEEEeccceEEEEE
Q psy8891          76 LHGKITSLDLSKGTETKFAGSSCNDL------VTYDGAGTTIISG-----HFDKKVRFWDFRAEEKVRDIELHGKITSLD  144 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~s~-----s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~  144 (203)
                      .+..     +.+++..++........      ..|+|+++.++..     ..+..|.+||+.+++..........+..+.
T Consensus       120 ~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~  194 (396)
T 3c5m_A          120 VDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI  194 (396)
T ss_dssp             CCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred             cccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence            2221     11111111111110000      1357777776654     356789999999887654444334455566


Q ss_pred             ecC-CcE-EEEeecC----------------ee---E-----EeeeEEEEEEcCCCEEEEecCC-----CcEEEEeCCCc
Q psy8891         145 LSK-GKY-YFVFAEG----------------FK---V-----QCDFTRAVFVVDDDYVAVGSID-----GNIYVWDCNTE  193 (203)
Q Consensus       145 ~~~-~~~-~~~~~~~----------------~~---~-----~~~~~~~~~~~~~~~l~s~s~d-----~~v~~wd~~~~  193 (203)
                      +++ +.. +.....+                ..   .     ...+....++|++++|+.++.+     +.|++||+.++
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            665 322 2211110                00   0     0123345788999987776554     44999999988


Q ss_pred             eeee
Q psy8891         194 QVEA  197 (203)
Q Consensus       194 ~~~~  197 (203)
                      +...
T Consensus       275 ~~~~  278 (396)
T 3c5m_A          275 ENEE  278 (396)
T ss_dssp             CEEE
T ss_pred             CeEE
Confidence            7654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.28  E-value=7.2e-10  Score=86.58  Aligned_cols=169  Identities=8%  Similarity=-0.061  Sum_probs=102.2

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCc----eE----------------EEEeCCCCEEEEe-----c
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCN----DL----------------VTYDGAGTTIISG-----H   55 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~----~~----------------~~~~~~~~~l~s~-----~   55 (203)
                      ..|+|||++|+.++.++.|++||+.+++..  .......    ..                ..++|+++.++..     .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  165 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN  165 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence            679999999999999999999999876532  1111110    00                1234555544433     4


Q ss_pred             CCCeEEEEECCCceEEEeeeeCCeEEEEEecC-CCceEEEecC----------------------------C--ceEEEE
Q psy8891          56 FDKKVRFWDFRAEEKVRDIELHGKITSLDLSK-GTETKFAGSS----------------------------C--NDLVTY  104 (203)
Q Consensus        56 ~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~----------------------------~--~~~~~~  104 (203)
                      .+..|.+||+.+++..........+..+.++| ++..++....                            .  .....|
T Consensus       166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~  245 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW  245 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE
T ss_pred             CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE
Confidence            56789999998877654444445566666666 4443322100                            0  011467


Q ss_pred             cCCCCEEEEeeCC-----CeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEc-CCCEEEE
Q psy8891         105 DGAGTTIISGHFD-----KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVV-DDDYVAV  178 (203)
Q Consensus       105 ~~~~~~l~s~s~d-----~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s  178 (203)
                      +|+|+.|+.++.+     +.|.+||+.+++.........                         .. ..++| +++++++
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-------------------------~~-~~~s~~dg~~l~~  299 (396)
T 3c5m_A          246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-------------------------CS-HLMSNFDGSLMVG  299 (396)
T ss_dssp             CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-------------------------EE-EEEECSSSSEEEE
T ss_pred             CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-------------------------CC-CCccCCCCceEEE
Confidence            8888877666544     448888887665422111110                         01 44667 8888777


Q ss_pred             ec----------------CCCcEEEEeCCCceeee
Q psy8891         179 GS----------------IDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       179 ~s----------------~d~~v~~wd~~~~~~~~  197 (203)
                      ++                .+..|++||+.++++..
T Consensus       300 ~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  334 (396)
T 3c5m_A          300 DGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK  334 (396)
T ss_dssp             EECCC----------CCCCCCEEEEEETTTTBCCE
T ss_pred             ecCCcceeeccccccccCCCCcEEEEecccCceEE
Confidence            54                34789999998877543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.27  E-value=4.4e-10  Score=86.22  Aligned_cols=72  Identities=13%  Similarity=0.095  Sum_probs=51.4

Q ss_pred             ceEEcCCCCEEEEEeCC------------CcEEEEeCCCCC---e--EEecCcCceEEEEeCCCCEEEEecCCCeEEEEE
Q psy8891           2 CAKFLGDPTKVVSGSCD------------RTLKIWDLRSTE---T--KFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD   64 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D------------~~v~lwdl~~~~---~--~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd   64 (203)
                      +++|+|||++|++++.+            +.|.+||+.+++   .  ..........+.++|+++ ++.++.+  |++||
T Consensus        96 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~~--i~~~d  172 (349)
T 1jmx_B           96 SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGPD--IYKMD  172 (349)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESSS--EEEEC
T ss_pred             ceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccCc--EEEEe
Confidence            57899999999998866            999999997632   1  122222233466899998 6555444  99999


Q ss_pred             CCCceEEEeeee
Q psy8891          65 FRAEEKVRDIEL   76 (203)
Q Consensus        65 ~~~~~~~~~~~~   76 (203)
                      +.+++.+..+..
T Consensus       173 ~~~~~~~~~~~~  184 (349)
T 1jmx_B          173 VKTGKYTVALPL  184 (349)
T ss_dssp             TTTCCEEEEECS
T ss_pred             CCCCceeccccc
Confidence            998887665543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.22  E-value=7.6e-10  Score=92.59  Aligned_cols=157  Identities=9%  Similarity=-0.010  Sum_probs=96.0

Q ss_pred             eEEc--CCCCE-EEEEeC-CCcEEEEeCC--C-CCe-EEec------CcCceEEEEeCCCCEEEEecCC----------C
Q psy8891           3 AKFL--GDPTK-VVSGSC-DRTLKIWDLR--S-TET-KFAG------SSCNDLVTYDGAGTTIISGHFD----------K   58 (203)
Q Consensus         3 ~~~~--~~~~~-l~t~s~-D~~v~lwdl~--~-~~~-~~~~------~~~~~~~~~~~~~~~l~s~~~D----------~   58 (203)
                      .+|+  |||++ |+.++. +..|.+|++.  + ++. ....      ......+.|+|+++.|++++.|          .
T Consensus        82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~  161 (662)
T 3azo_A           82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR  161 (662)
T ss_dssp             EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred             ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence            3455  99998 765554 5667777776  2 332 2222      1123346799999999999887          5


Q ss_pred             eEEEEECCC------ceEEEee-eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC--------eEEEE
Q psy8891          59 KVRFWDFRA------EEKVRDI-ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK--------KVRFW  123 (203)
Q Consensus        59 ~i~vwd~~~------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--------~i~iW  123 (203)
                      .|++||+..      ++..... ..+..+..                   ..|+|||+.|+.++.++        .|++|
T Consensus       162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~SpDG~~la~~~~~~~~~~~~~~~i~~~  222 (662)
T 3azo_A          162 FLAAVPLDGSAAADRSAVRELSDDAHRFVTG-------------------PRLSPDGRQAVWLAWDHPRMPWEGTELKTA  222 (662)
T ss_dssp             EEEEEETTSTTTTCGGGSEESSCSCSSEECC-------------------CEECTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred             EEEEEECCCCccccCCceeEEEecCCCcccC-------------------ceECCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence            899999987      4432211 11121211                   35788888888887653        79999


Q ss_pred             ECC-CCc--eEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCC--cEEEEeCCCceeeee
Q psy8891         124 DFR-AEE--KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG--NIYVWDCNTEQVEAV  198 (203)
Q Consensus       124 d~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~--~v~~wd~~~~~~~~~  198 (203)
                      |+. +++  ....+....                      ........++||+++++++..|+  .|.+||+.++++...
T Consensus       223 d~~~~g~~~~~~~l~~~~----------------------~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l  280 (662)
T 3azo_A          223 RVTEDGRFADTRTLLGGP----------------------EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL  280 (662)
T ss_dssp             EECTTSCEEEEEEEEEET----------------------TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES
T ss_pred             EECCCCcccccEEeCCCC----------------------CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec
Confidence            998 452  111111100                      00122345778999888888888  666677767776554


Q ss_pred             ec
Q psy8891         199 LK  200 (203)
Q Consensus       199 ~~  200 (203)
                      ..
T Consensus       281 ~~  282 (662)
T 3azo_A          281 CR  282 (662)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.21  E-value=2.5e-09  Score=90.28  Aligned_cols=109  Identities=11%  Similarity=0.070  Sum_probs=71.6

Q ss_pred             ceEEcCCCCEEE-----EEeCCCcEEEEeCCCCCeE-Ee-cCcCc-eEEEEeCCCCEEEEecCCCe-------------E
Q psy8891           2 CAKFLGDPTKVV-----SGSCDRTLKIWDLRSTETK-FA-GSSCN-DLVTYDGAGTTIISGHFDKK-------------V   60 (203)
Q Consensus         2 ~~~~~~~~~~l~-----t~s~D~~v~lwdl~~~~~~-~~-~~~~~-~~~~~~~~~~~l~s~~~D~~-------------i   60 (203)
                      +++|||||++|+     +|+.+.+|++||+.+++.. .. ..... ..+.|+|+++.|+.++.|..             |
T Consensus       125 ~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v  204 (695)
T 2bkl_A          125 TWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTI  204 (695)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEE
T ss_pred             EEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEE
Confidence            468999999998     6666789999999987643 11 11111 34789999999999998876             9


Q ss_pred             EEEECCCceE----EEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC----eEEEEECCCCc
Q psy8891          61 RFWDFRAEEK----VRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK----KVRFWDFRAEE  129 (203)
Q Consensus        61 ~vwd~~~~~~----~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~----~i~iWd~~~~~  129 (203)
                      ++|++.+++.    +.....+ ..+..+                   .|+|+|++|+..+.++    .|.+||..+++
T Consensus       205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~-------------------~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~  263 (695)
T 2bkl_A          205 RYHTLGTEPSKDTVVHERTGDPTTFLQS-------------------DLSRDGKYLFVYILRGWSENDVYWKRPGEKD  263 (695)
T ss_dssp             EEEETTSCGGGCEEEECCCCCTTCEEEE-------------------EECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred             EEEECCCCchhceEEEecCCCCEEEEEE-------------------EECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence            9999987652    1111111 123333                   4566666666666555    66666654443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.17  E-value=1.7e-09  Score=83.21  Aligned_cols=86  Identities=13%  Similarity=0.204  Sum_probs=56.3

Q ss_pred             ceEEcCCCCEEEEEeCCC-----cEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCC-----------------
Q psy8891           2 CAKFLGDPTKVVSGSCDR-----TLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFD-----------------   57 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~-----~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D-----------------   57 (203)
                      +.+|+|||++|+.++.++     .|.+||+.+++..  ..... ...+.|+|+++.|+.++.+                 
T Consensus        63 ~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           63 MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred             CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence            468999999999877643     3777888775532  22222 4456789999988887642                 


Q ss_pred             ----------CeEEEEECCCceEEEeeeeCCeEEEEEecCCC
Q psy8891          58 ----------KKVRFWDFRAEEKVRDIELHGKITSLDLSKGT   89 (203)
Q Consensus        58 ----------~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~   89 (203)
                                ..|.+||+.+++.+..+... .+..+.++|++
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg  182 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK  182 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe
Confidence                      57899999887763333322 34445555544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.16  E-value=3.4e-08  Score=73.22  Aligned_cols=194  Identities=11%  Similarity=0.009  Sum_probs=117.6

Q ss_pred             ceEEcCCCCEEE-EEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee-ee
Q psy8891           2 CAKFLGDPTKVV-SGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI-EL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~-t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~-~~   76 (203)
                      ++++++++...+ +.+.++.|..||..+......   .......++++++++.+++.. ++.|.+||.......... ..
T Consensus        28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~  106 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDG  106 (270)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCS
T ss_pred             ceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCC
Confidence            467889998777 557889999999866443221   111123367788888666666 899999998765432111 11


Q ss_pred             CCeEEEEEecCCCceEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE
Q psy8891          77 HGKITSLDLSKGTETKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD  133 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~  133 (203)
                      ...+..+++.+++...++....                       ..-+.++++|+..++...++.|.+||.........
T Consensus       107 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  186 (270)
T 1rwi_B          107 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL  186 (270)
T ss_dssp             CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC
T ss_pred             cCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee
Confidence            1346677777765433321111                       11256778888777766778999999876553322


Q ss_pred             Eecc-ceEEEEEecCCcEEEEeecC---ee---------E------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCce
Q psy8891         134 IELH-GKITSLDLSKGKYYFVFAEG---FK---------V------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQ  194 (203)
Q Consensus       134 ~~~~-~~v~~~~~~~~~~~~~~~~~---~~---------~------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~  194 (203)
                      .... ..+..+.++++..+++....   ..         .      ......+++.+++..+++...++.|+++++...+
T Consensus       187 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          187 PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            1111 34677777765444443311   00         0      0123456677889888898999999999988766


Q ss_pred             ee
Q psy8891         195 VE  196 (203)
Q Consensus       195 ~~  196 (203)
                      .+
T Consensus       267 ~~  268 (270)
T 1rwi_B          267 HH  268 (270)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.16  E-value=4.4e-08  Score=80.95  Aligned_cols=179  Identities=11%  Similarity=0.009  Sum_probs=112.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCC--CCCeEEe--cCcCceEEEEe----CCCCEEEEec-CCCeEEEEECCCceEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLR--STETKFA--GSSCNDLVTYD----GAGTTIISGH-FDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~--~~~~~~~--~~~~~~~~~~~----~~~~~l~s~~-~D~~i~vwd~~~~~~~~   72 (203)
                      .++|+|||+++++++.|+.|.+||+.  +.+....  ......-+.++    |++++++.++ .++++.|+|..+.+.++
T Consensus       201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~  280 (567)
T 1qks_A          201 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK  280 (567)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred             ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE
Confidence            47899999999999999999999995  5443221  11112335677    6999887766 45899999999988877


Q ss_pred             eeeeCC------------eEEEEEecCCCceEEEecC-------------------------CceEEEEcCCCCEEEEee
Q psy8891          73 DIELHG------------KITSLDLSKGTETKFAGSS-------------------------CNDLVTYDGAGTTIISGH  115 (203)
Q Consensus        73 ~~~~~~------------~v~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~l~s~s  115 (203)
                      .+...+            .+..+..++++...+....                         ...-..|+|+|++++++.
T Consensus       281 ~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~  360 (567)
T 1qks_A          281 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA  360 (567)
T ss_dssp             EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred             EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEe
Confidence            665321            3445555544332221100                         001246899999887665


Q ss_pred             -CCCeEEEEECCCCceEEEEec-cceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCE-EEEec-CCCcEEEEeCC
Q psy8891         116 -FDKKVRFWDFRAEEKVRDIEL-HGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDY-VAVGS-IDGNIYVWDCN  191 (203)
Q Consensus       116 -~d~~i~iWd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s-~d~~v~~wd~~  191 (203)
                       .+++|.++|..+++.+..+.. ...     .++++-              . ..+.|++.. ++++. .+++|.++|..
T Consensus       361 ~~sn~V~ViD~~t~kl~~~i~vgg~~-----Phpg~g--------------~-~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          361 NARNKLVVIDTKEGKLVAIEDTGGQT-----PHPGRG--------------A-NFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             GGGTEEEEEETTTTEEEEEEECSSSS-----BCCTTC--------------E-EEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             CCCCeEEEEECCCCcEEEEEeccCcC-----CCCccc--------------e-eeECCCCCcEEEeCCCCCCeEEEecCC
Confidence             578999999998876655543 110     011100              0 113466444 44543 46899999988


Q ss_pred             C-------ceeeeeec
Q psy8891         192 T-------EQVEAVLK  200 (203)
Q Consensus       192 ~-------~~~~~~~~  200 (203)
                      +       .+.+++++
T Consensus       421 ~~~~~~~~~kvv~~i~  436 (567)
T 1qks_A          421 PEGHPDNAWKILDSFP  436 (567)
T ss_dssp             TTTCTTTBTSEEEEEE
T ss_pred             CCCCccccCEEEEEEe
Confidence            7       56677765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.13  E-value=1.5e-08  Score=78.08  Aligned_cols=175  Identities=10%  Similarity=0.116  Sum_probs=111.5

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee-cC------cCceEEEEeCCCCEEEEec--CCCeEEEEECCCceEE
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA-GS------SCNDLVTYDGAGTTIISGH--FDKKVRFWDFRAEEKV   71 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~-~~------~~~~~~~~~~~~~~l~s~~--~D~~i~vwd~~~~~~~   71 (203)
                      ++++++++..++...++.|.+||+.+.+..  .. +.      .+.. +++  ++..|+.+.  .++.|.++|+.+++.+
T Consensus        89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~-i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQ-MVQ--YGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCC-EEE--ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcce-EEE--ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence            567788854444448999999999886542  11 22      2223 333  344555554  4899999999998877


Q ss_pred             EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC----------CeEEEEECCCCceEEEEecc--ce
Q psy8891          72 RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD----------KKVRFWDFRAEEKVRDIELH--GK  139 (203)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d----------~~i~iWd~~~~~~~~~~~~~--~~  139 (203)
                      ..+........                   +.++++|++++++..+          +.|.++|..+++..+.+...  ..
T Consensus       166 ~~i~~g~~p~~-------------------i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~  226 (328)
T 3dsm_A          166 DELTIGIQPTS-------------------LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDW  226 (328)
T ss_dssp             EEEECSSCBCC-------------------CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCC
T ss_pred             EEEEcCCCccc-------------------eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCC
Confidence            66543222122                   3456677666665544          78999999988877777653  35


Q ss_pred             EEEEEecCC-cEEEEeecCe-------------eE----EeeeEEEEEEc-CCCEEEEe----cCCCcEEEEeCCCceee
Q psy8891         140 ITSLDLSKG-KYYFVFAEGF-------------KV----QCDFTRAVFVV-DDDYVAVG----SIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       140 v~~~~~~~~-~~~~~~~~~~-------------~~----~~~~~~~~~~~-~~~~l~s~----s~d~~v~~wd~~~~~~~  196 (203)
                      +..+.++++ ..+++.....             ..    ......++++| ++..+++.    ..++.|.+||.+ |+++
T Consensus       227 p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          227 PSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             CEEEEECTTSCEEEEESSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             ceeEEEecCCCEEEEEccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            778888863 4333321110             00    01234466787 45566666    678999999998 9998


Q ss_pred             eeec
Q psy8891         197 AVLK  200 (203)
Q Consensus       197 ~~~~  200 (203)
                      ++++
T Consensus       306 ~~i~  309 (328)
T 3dsm_A          306 DEFY  309 (328)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.12  E-value=5.5e-09  Score=82.20  Aligned_cols=143  Identities=11%  Similarity=0.092  Sum_probs=95.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC-------------eEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCc
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE-------------TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~-------------~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~   68 (203)
                      .+++++....+++|+.| .+++|++...+             ....... ...+++  +++.|+.+ .++.|++||+++.
T Consensus        42 lLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl  116 (388)
T 1xip_A           42 NLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL  116 (388)
T ss_dssp             CEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred             EEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence            46788999999999987 55669864211             2222233 444666  78899998 8899999999775


Q ss_pred             eEEEeeee-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecC
Q psy8891          69 EKVRDIEL-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK  147 (203)
Q Consensus        69 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~  147 (203)
                      ........ ...+.++.+                  ..|   .++.++.||+|.+||+.++....   ....+       
T Consensus       117 ~~~~~~~~~~~~v~~i~~------------------~~p---~~av~~~dG~L~v~dl~~~~~~~---~~~~V-------  165 (388)
T 1xip_A          117 SEFRTVTSFEKPVFQLKN------------------VNN---TLVILNSVNDLSALDLRTKSTKQ---LAQNV-------  165 (388)
T ss_dssp             TCEEEEEECSSCEEEEEE------------------CSS---EEEEEETTSEEEEEETTTCCEEE---EEESE-------
T ss_pred             hccCccceeecceeeEEe------------------cCC---CEEEEECCCCEEEEEccCCcccc---ccCCc-------
Confidence            53322221 122332211                  112   38888999999999999776532   11223       


Q ss_pred             CcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCcee--eeee
Q psy8891         148 GKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQV--EAVL  199 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~--~~~~  199 (203)
                                       ++++.+|+|  ++.|..||++++|+...+++  .++|
T Consensus       166 -----------------s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I  200 (388)
T 1xip_A          166 -----------------TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEF  200 (388)
T ss_dssp             -----------------EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             -----------------eEEEEcCCc--eEEEEcCCcEEEEcCCCcccccccee
Confidence                             345555676  67899999999999988886  6666

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.12  E-value=7e-09  Score=81.00  Aligned_cols=69  Identities=13%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             CCCCEEEEEe------CCCcEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEec----------CCCeEEEEECCCc
Q psy8891           7 GDPTKVVSGS------CDRTLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISGH----------FDKKVRFWDFRAE   68 (203)
Q Consensus         7 ~~~~~l~t~s------~D~~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~----------~D~~i~vwd~~~~   68 (203)
                      +++++++...      .|++|.+||..+.+....  ..... -+.++|++++|+.++          .+++|.+||+.+.
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            3666666653      478999999987664321  11111 468899999998886          3678999999988


Q ss_pred             eEEEeeee
Q psy8891          69 EKVRDIEL   76 (203)
Q Consensus        69 ~~~~~~~~   76 (203)
                      +.+.++..
T Consensus        92 ~~~~~i~~   99 (361)
T 2oiz_A           92 TFEKEISL   99 (361)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEc
Confidence            87776653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.10  E-value=6.1e-08  Score=73.10  Aligned_cols=181  Identities=10%  Similarity=-0.049  Sum_probs=104.3

Q ss_pred             ceEEcCCCC-EEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe
Q psy8891           2 CAKFLGDPT-KVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK   79 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~   79 (203)
                      +++|+|+++ .++++..++.|..||..+....+.. ......+.++++++++++...++.|.+||..+++..........
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~  111 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG  111 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC
Confidence            478999998 7888999999999999876222222 22234467889999888887889999999977764322211000


Q ss_pred             EEEEEecCCCceEEEecCCceEEEEcCCCCEEEE----eeC-------------CCeEEEEECCCCceEEEEeccceEEE
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS----GHF-------------DKKVRFWDFRAEEKVRDIELHGKITS  142 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----~s~-------------d~~i~iWd~~~~~~~~~~~~~~~v~~  142 (203)
                      .   .           .....-+.++|+|+++++    ++.             .+.|..+|.. ++..........+..
T Consensus       112 ~---~-----------~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A          112 K---K-----------LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             E---E-----------CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred             C---C-----------CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence            0   0           000112456677777766    321             2355555544 333222222233556


Q ss_pred             EEecCCcEEEEeecC-eeE-E-------------ee-------eEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         143 LDLSKGKYYFVFAEG-FKV-Q-------------CD-------FTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       143 ~~~~~~~~~~~~~~~-~~~-~-------------~~-------~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +.++++...++.... ..+ .             ..       ...+++.+++.+.++.  ++.|++||.+ ++.+..+.
T Consensus       177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~  253 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL  253 (296)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE
T ss_pred             EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE
Confidence            666655433332211 000 0             00       1234567788766665  8899999987 77776664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.10  E-value=2.1e-07  Score=73.04  Aligned_cols=171  Identities=14%  Similarity=-0.022  Sum_probs=103.7

Q ss_pred             eEEcCCCCEEEEEeC--CCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee----
Q psy8891           3 AKFLGDPTKVVSGSC--DRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE----   75 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~--D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~----   75 (203)
                      ++|+|||++|+.++.  +++|.++| .+.+.... .............+..+++...||.+.++|. +++......    
T Consensus       130 ~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~  207 (373)
T 2mad_H          130 NANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM  207 (373)
T ss_pred             eEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc
Confidence            579999999998875  57899999 88765433 2222222222223345666778999999998 665442211    


Q ss_pred             --e----------------------CCeEEEEEecCCCceEEEe--------------cCCceEEEEcCCCCEEEEeeC-
Q psy8891          76 --L----------------------HGKITSLDLSKGTETKFAG--------------SSCNDLVTYDGAGTTIISGHF-  116 (203)
Q Consensus        76 --~----------------------~~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~s~s~-  116 (203)
                        .                      .+.+..++.......+...              ......+.++++++.++.+.. 
T Consensus       208 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~  287 (373)
T 2mad_H          208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE  287 (373)
T ss_pred             ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence              0                      0112222222111111000              000112457778777777543 


Q ss_pred             ---------CCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEec-CCCcE
Q psy8891         117 ---------DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGS-IDGNI  185 (203)
Q Consensus       117 ---------d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s-~d~~v  185 (203)
                               +++|.+.|..+++.++.+.......                        .+.++||++ .++++. .++.|
T Consensus       288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~------------------------~i~~s~Dg~~~l~v~~~~~~~V  343 (373)
T 2mad_H          288 QSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVD------------------------AISVAQDGGPDLYALSAGTEVL  343 (373)
T ss_pred             CCcccccCCCCeEEEEECCCCEEEEEEECCCCcC------------------------eEEECCCCCeEEEEEcCCCCeE
Confidence                     3578888988888777775544332                        344567888 677776 58999


Q ss_pred             EEEeCCCceeeeee
Q psy8891         186 YVWDCNTEQVEAVL  199 (203)
Q Consensus       186 ~~wd~~~~~~~~~~  199 (203)
                      .++|+.+++.++++
T Consensus       344 ~ViD~~t~~vv~~i  357 (373)
T 2mad_H          344 HIYDAGAGDQDQST  357 (373)
T ss_pred             EEEECCCCCEEeee
Confidence            99999999999884

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.09  E-value=2.6e-07  Score=70.66  Aligned_cols=179  Identities=11%  Similarity=0.019  Sum_probs=104.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecCC----CeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHFD----KKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D----~~i~vwd~~~~~~~~~~   74 (203)
                      +++|+++++.++++..++.|.+||..+++...   ........++++++++++++...+    +.|.+||...+.....+
T Consensus        49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~  128 (333)
T 2dg1_A           49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII  128 (333)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred             CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE
Confidence            46889999988889999999999998766432   112223446778898888877666    78999998776543222


Q ss_pred             ee---CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC------CCeEEEEECCCCceEEEEeccceEEEEEe
Q psy8891          75 EL---HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF------DKKVRFWDFRAEEKVRDIELHGKITSLDL  145 (203)
Q Consensus        75 ~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------d~~i~iWd~~~~~~~~~~~~~~~v~~~~~  145 (203)
                      ..   ...+..+                   .++|+|+++++...      .+.|..+|..+++..........+..+.+
T Consensus       129 ~~~~~~~~~~~i-------------------~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  189 (333)
T 2dg1_A          129 EDLSTAYCIDDM-------------------VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIAL  189 (333)
T ss_dssp             CSSSSCCCEEEE-------------------EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred             ccCccCCcccce-------------------EECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence            11   1123333                   44556655555443      24555555554433222111123455555


Q ss_pred             cCCc-EEEEeec-------------CeeE-------E------eeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         146 SKGK-YYFVFAE-------------GFKV-------Q------CDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       146 ~~~~-~~~~~~~-------------~~~~-------~------~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                      +++. .+++...             +...       .      .....+.+.+++.++++...++.|++||.+ ++.+..
T Consensus       190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~  268 (333)
T 2dg1_A          190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQ  268 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEE
T ss_pred             CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEE
Confidence            5542 2222110             1000       0      012335667788888887788999999984 666665


Q ss_pred             ec
Q psy8891         199 LK  200 (203)
Q Consensus       199 ~~  200 (203)
                      +.
T Consensus       269 ~~  270 (333)
T 2dg1_A          269 IL  270 (333)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.08  E-value=3.2e-08  Score=78.81  Aligned_cols=197  Identities=11%  Similarity=0.042  Sum_probs=122.5

Q ss_pred             eEEcCCCCEEEEEe----------CCCcEEEEeCCCCCeEEe---c-C------cCceEEEEeCCCCEEEEecC--CCeE
Q psy8891           3 AKFLGDPTKVVSGS----------CDRTLKIWDLRSTETKFA---G-S------SCNDLVTYDGAGTTIISGHF--DKKV   60 (203)
Q Consensus         3 ~~~~~~~~~l~t~s----------~D~~v~lwdl~~~~~~~~---~-~------~~~~~~~~~~~~~~l~s~~~--D~~i   60 (203)
                      +.++||+++|+.+.          .+++|.++|+.+.+....   . .      ....-+.++|++++|+.+..  ++.|
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~V  202 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAV  202 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEE
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeE
Confidence            67899999988876          478999999998664321   1 0      11123578999999988874  5799


Q ss_pred             EEEECCCceEEEeeeeCCeE--------EEEEecCCCceEEEecCCceE------------------EEEcCCCCEEEEe
Q psy8891          61 RFWDFRAEEKVRDIELHGKI--------TSLDLSKGTETKFAGSSCNDL------------------VTYDGAGTTIISG  114 (203)
Q Consensus        61 ~vwd~~~~~~~~~~~~~~~v--------~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~s~  114 (203)
                      -+.|+.+.+.+.++...+.+        .-+.+++++..++.....+.+                  ..|.+++..++..
T Consensus       203 sVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~  282 (426)
T 3c75_H          203 GVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP  282 (426)
T ss_dssp             EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE
T ss_pred             EEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE
Confidence            99999999988777653321        114455666554433322211                  2467788877777


Q ss_pred             eCCCeEEEEECCCCceE--EEEe-------------ccceEEEEEecCCcEEEEe-------------------ecCe--
Q psy8891         115 HFDKKVRFWDFRAEEKV--RDIE-------------LHGKITSLDLSKGKYYFVF-------------------AEGF--  158 (203)
Q Consensus       115 s~d~~i~iWd~~~~~~~--~~~~-------------~~~~v~~~~~~~~~~~~~~-------------------~~~~--  158 (203)
                      +..++|.+.|...+...  ..+.             ...+...++-...+.+...                   ....  
T Consensus       283 s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv  362 (426)
T 3c75_H          283 TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER  362 (426)
T ss_dssp             BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE
Confidence            88889999998644311  1111             0000112222222211111                   0001  


Q ss_pred             ----eEEeeeEEEEEEcCCC-EEEEec-CCCcEEEEeCCCceeeeee
Q psy8891         159 ----KVQCDFTRAVFVVDDD-YVAVGS-IDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       159 ----~~~~~~~~~~~~~~~~-~l~s~s-~d~~v~~wd~~~~~~~~~~  199 (203)
                          ........+.++||++ +++++. .++.|.++|+.+++.++++
T Consensus       363 v~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          363 INKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                1112244567889998 888877 5999999999999999987

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.05  E-value=1e-07  Score=80.72  Aligned_cols=107  Identities=8%  Similarity=0.117  Sum_probs=70.7

Q ss_pred             ceEEcCCCCEEEEEeCCC-----cEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEecCCCe---------------
Q psy8891           2 CAKFLGDPTKVVSGSCDR-----TLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISGHFDKK---------------   59 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~-----~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~D~~---------------   59 (203)
                      .++|||||++|+.++.++     +|++||+.+++....  .......+.|+||++.|+.++.|+.               
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~  208 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence            468999999998766544     899999998764321  1111234789999999999888776               


Q ss_pred             -EEEEECCCceEE--Eeeee---CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-----CCeEEEEECCC
Q psy8891          60 -VRFWDFRAEEKV--RDIEL---HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-----DKKVRFWDFRA  127 (203)
Q Consensus        60 -i~vwd~~~~~~~--~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-----d~~i~iWd~~~  127 (203)
                       |++|++.+++..  .....   ...+..                   ..|+|+|++|+..+.     +..|.+||+.+
T Consensus       209 ~v~~~~l~t~~~~~~~v~~~~~~~~~~~~-------------------~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          209 KLYYHVLGTDQSEDILCAEFPDEPKWMGG-------------------AELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEE-------------------EEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             EEEEEECCCCcccceEEeccCCCCeEEEE-------------------EEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence             999999876521  11111   111223                   345667766666554     56888888875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.03  E-value=1.1e-07  Score=73.01  Aligned_cols=167  Identities=16%  Similarity=0.211  Sum_probs=97.2

Q ss_pred             CCCEEEEE---------eCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCC---C--eEEEEECCCceEEEe
Q psy8891           8 DPTKVVSG---------SCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFD---K--KVRFWDFRAEEKVRD   73 (203)
Q Consensus         8 ~~~~l~t~---------s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~--~i~vwd~~~~~~~~~   73 (203)
                      ||++++..         +.++.|.+||+.+++....  .......|+|+++.|+..+.+   +  .|.+||+..++....
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l  100 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI  100 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE
Confidence            88887654         2367899999988664322  223446899999999887754   3  478888887765443


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC---------------------------CCeEEEEECC
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF---------------------------DKKVRFWDFR  126 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---------------------------d~~i~iWd~~  126 (203)
                      ...+. +..+.++|                   +|+.|+.++.                           ...|.+||+.
T Consensus       101 ~~~~~-~~~~~wsp-------------------dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~  160 (347)
T 2gop_A          101 LEAKN-IRSLEWNE-------------------DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE  160 (347)
T ss_dssp             EEESE-EEEEEECT-------------------TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred             EcCCC-ccceeECC-------------------CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence            33333 55555555                   4444444432                           3578999998


Q ss_pred             CCceEEEEeccceEEEEEecCCcEEEEee-c---------CeeE-----------EeeeEEEEEEcCCCEEEEecCC---
Q psy8891         127 AEEKVRDIELHGKITSLDLSKGKYYFVFA-E---------GFKV-----------QCDFTRAVFVVDDDYVAVGSID---  182 (203)
Q Consensus       127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~---------~~~~-----------~~~~~~~~~~~~~~~l~s~s~d---  182 (203)
                      +++.++.+... .+..+.++++. ++... .         ...+           .........+|++++|+.++.+   
T Consensus       161 ~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          161 SEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKK  238 (347)
T ss_dssp             TTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEEESEEEEEECSSCEEEEECCSSS
T ss_pred             CCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccCcceeeECCCCCEEEEEEccccC
Confidence            88763444332 44455555555 22221 0         0000           0001111237899988777654   


Q ss_pred             -----CcEEEEeCCCceeeeeec
Q psy8891         183 -----GNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       183 -----~~v~~wd~~~~~~~~~~~  200 (203)
                           ..|.+||  +++....+.
T Consensus       239 ~~~~~~~l~~~d--~~~~~~l~~  259 (347)
T 2gop_A          239 YMSEHNKLYIYD--GKEVMGILD  259 (347)
T ss_dssp             CCCSSCEEEEEC--SSCEEESST
T ss_pred             CccccceEEEEC--CCceEeccc
Confidence                 3688888  566554443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.00  E-value=3.9e-08  Score=75.69  Aligned_cols=148  Identities=12%  Similarity=0.121  Sum_probs=95.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC------e
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG------K   79 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~------~   79 (203)
                      +++..++...+++|.+||..+.+...  ........+++++++...++...++.|.+||+.+++....+....      .
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~  132 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGS  132 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCB
T ss_pred             CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCC
Confidence            34455566668999999999876532  222222335566677544454489999999999988766654322      1


Q ss_pred             EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee--CCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecC
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH--FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEG  157 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  157 (203)
                      ...+                   .+  ++..|+.+.  .+++|.++|+.+++..+.+......                 
T Consensus       133 p~~i-------------------~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p-----------------  174 (328)
T 3dsm_A          133 TEQM-------------------VQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP-----------------  174 (328)
T ss_dssp             CCCE-------------------EE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB-----------------
T ss_pred             cceE-------------------EE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc-----------------
Confidence            1111                   12  233455555  4889999999998876665432211                 


Q ss_pred             eeEEeeeEEEEEEcCCCEEEEecCC----------CcEEEEeCCCceeeeeec
Q psy8891         158 FKVQCDFTRAVFVVDDDYVAVGSID----------GNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~s~s~d----------~~v~~wd~~~~~~~~~~~  200 (203)
                             ..+.+.+++++++++..+          +.|.++|..++++++++.
T Consensus       175 -------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~  220 (328)
T 3dsm_A          175 -------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK  220 (328)
T ss_dssp             -------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred             -------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence                   123455677777666554          789999999999887764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.96  E-value=6.8e-08  Score=73.91  Aligned_cols=172  Identities=9%  Similarity=0.002  Sum_probs=104.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee-eCCeE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE-LHGKI   80 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~-~~~~v   80 (203)
                      +++|++++..++..+.+++++.|.-...............+++++++++++++..++.|.+||..+++...... ....+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~   89 (333)
T 2dg1_A           10 TLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANP   89 (333)
T ss_dssp             BCCSCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSE
T ss_pred             eeeecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCc
Confidence            57788888888888889999999321111111122223446788999888888899999999998776543321 12334


Q ss_pred             EEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC----CeEEEEECCCCceEEEEe---ccceEEEEEecCCcEEEE
Q psy8891          81 TSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD----KKVRFWDFRAEEKVRDIE---LHGKITSLDLSKGKYYFV  153 (203)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d----~~i~iWd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~  153 (203)
                      ..++                   ++++|+++++...+    +.|.+||..++.....+.   ....+..+.++++..+++
T Consensus        90 ~~i~-------------------~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v  150 (333)
T 2dg1_A           90 AAIK-------------------IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF  150 (333)
T ss_dssp             EEEE-------------------ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE
T ss_pred             ceEE-------------------ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEE
Confidence            4443                   45566666665555    689999987765432222   113466666665544333


Q ss_pred             eecC-------e----------eEE------eeeEEEEEEcCCCEE-EEecCCCcEEEEeCCC
Q psy8891         154 FAEG-------F----------KVQ------CDFTRAVFVVDDDYV-AVGSIDGNIYVWDCNT  192 (203)
Q Consensus       154 ~~~~-------~----------~~~------~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~~  192 (203)
                      ....       .          ...      .....+.++|++++| ++.+.++.|++||.++
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          151 TDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            2210       0          000      012345678888855 5556789999999863

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.96  E-value=3.3e-07  Score=77.52  Aligned_cols=66  Identities=9%  Similarity=0.078  Sum_probs=49.4

Q ss_pred             ceEEcCCCCEEEEEeCCCc----------------EEEEeCCCCC----eEEecCc-C--ceEEEEeCCCCEEEEecC--
Q psy8891           2 CAKFLGDPTKVVSGSCDRT----------------LKIWDLRSTE----TKFAGSS-C--NDLVTYDGAGTTIISGHF--   56 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~----------------v~lwdl~~~~----~~~~~~~-~--~~~~~~~~~~~~l~s~~~--   56 (203)
                      +++|+|||+.|+.++.|+.                |++|++.+++    ..+.... .  ...+.++|+++.|+..+.  
T Consensus       175 ~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  254 (710)
T 2xdw_A          175 CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG  254 (710)
T ss_dssp             CEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS
T ss_pred             eEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc
Confidence            4789999999999998877                9999998754    2222211 1  234678999998877654  


Q ss_pred             ---CCeEEEEECCC
Q psy8891          57 ---DKKVRFWDFRA   67 (203)
Q Consensus        57 ---D~~i~vwd~~~   67 (203)
                         +..|.+||+.+
T Consensus       255 ~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          255 CDPVNRLWYCDLQQ  268 (710)
T ss_dssp             SSSCCEEEEEEGGG
T ss_pred             CCCccEEEEEECcc
Confidence               67899999976

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.94  E-value=6.2e-08  Score=82.43  Aligned_cols=107  Identities=9%  Similarity=0.039  Sum_probs=69.4

Q ss_pred             ceEEcCCCCEEEEEeCC-----CcEEEEeCCCCCeEEec-CcC-ceEEEEeCCCCEEEEecCCCe--------------E
Q psy8891           2 CAKFLGDPTKVVSGSCD-----RTLKIWDLRSTETKFAG-SSC-NDLVTYDGAGTTIISGHFDKK--------------V   60 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D-----~~v~lwdl~~~~~~~~~-~~~-~~~~~~~~~~~~l~s~~~D~~--------------i   60 (203)
                      ..+|||||++|+.++.+     .+|++||+.+++..... ... ...+.|+|+ +.|+.++.|+.              |
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v  245 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV  245 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence            46899999998876654     46999999987753221 111 123578999 88888877654              8


Q ss_pred             EEEECCCceEEE--eeeeCC---eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC-----eEEEEECCCC
Q psy8891          61 RFWDFRAEEKVR--DIELHG---KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK-----KVRFWDFRAE  128 (203)
Q Consensus        61 ~vwd~~~~~~~~--~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-----~i~iWd~~~~  128 (203)
                      ++|++.+++...  ......   .+.                   -..|+|||++|+..+.++     .|.+||+.++
T Consensus       246 ~~~~lgt~~~~~~lv~~~~~~~~~~~-------------------~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          246 WLHRLGTPQSADQPVFATPELPKRGH-------------------GASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEE-------------------EEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EEEECCCCchhCEEEeccCCCCeEEE-------------------EEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            899987654211  111110   122                   235677888777776543     8999998765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.93  E-value=6.9e-09  Score=81.32  Aligned_cols=66  Identities=12%  Similarity=0.105  Sum_probs=40.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      ++..+++++.|+.|+.||..+++..  ........ .....++..+++++.|+.|+.||..+++.+..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s-~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~   75 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQ-VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL   75 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCC-CC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCcee-cceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence            6788999999999999999987753  22211111 112245668888899999999999888765443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.93  E-value=9.5e-08  Score=74.77  Aligned_cols=65  Identities=6%  Similarity=-0.087  Sum_probs=47.9

Q ss_pred             eEEcCCCCEEEEEe----------CCCcEEEEeCCCCCeEEe--cC--------cCceEEEEeCCCCEEEEecC--CCeE
Q psy8891           3 AKFLGDPTKVVSGS----------CDRTLKIWDLRSTETKFA--GS--------SCNDLVTYDGAGTTIISGHF--DKKV   60 (203)
Q Consensus         3 ~~~~~~~~~l~t~s----------~D~~v~lwdl~~~~~~~~--~~--------~~~~~~~~~~~~~~l~s~~~--D~~i   60 (203)
                      +.|+||+++++.+.          .+++|.+||+.+.+....  ..        .....+.++|++++|+.+..  +..+
T Consensus        70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v  149 (368)
T 1mda_H           70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA  149 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred             eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeE
Confidence            67899999998886          478999999998764321  11        11123678999998888865  4678


Q ss_pred             EE--EECCC
Q psy8891          61 RF--WDFRA   67 (203)
Q Consensus        61 ~v--wd~~~   67 (203)
                      .+  +|+.+
T Consensus       150 ~V~~iD~~t  158 (368)
T 1mda_H          150 GLSVPGASD  158 (368)
T ss_dssp             EEEETTTEE
T ss_pred             EEEEEchhh
Confidence            88  99866

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.92  E-value=1.1e-06  Score=66.10  Aligned_cols=175  Identities=13%  Similarity=0.046  Sum_probs=94.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-c----C--cCceEEEEeCCCCEEEE----ecC-------------C
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-G----S--SCNDLVTYDGAGTTIIS----GHF-------------D   57 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~----~--~~~~~~~~~~~~~~l~s----~~~-------------D   57 (203)
                      +++++++|..+++.+.++.|.+||..+++.... .    .  ....-+++++++++++|    |..             .
T Consensus        73 ~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~  152 (296)
T 3e5z_A           73 GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG  152 (296)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred             eeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence            478899999888887789999999976553211 1    0  01123667899988887    331             2


Q ss_pred             CeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC-CCce---EEE
Q psy8891          58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR-AEEK---VRD  133 (203)
Q Consensus        58 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~-~~~~---~~~  133 (203)
                      +.|..+|.. ++.............                   ++|+|+|+.+++.+.++.|.+||+. +++.   ...
T Consensus       153 ~~l~~~~~~-g~~~~~~~~~~~~~g-------------------i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~  212 (296)
T 3e5z_A          153 RWVFRLAPD-GTLSAPIRDRVKPNG-------------------LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH  212 (296)
T ss_dssp             CEEEEECTT-SCEEEEECCCSSEEE-------------------EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE
T ss_pred             cEEEEECCC-CCEEEeecCCCCCcc-------------------EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE
Confidence            344444433 322111111111222                   4566677777666667788888876 4443   122


Q ss_pred             Eec-cceEEEEEecCCcEEEEeecC---------eeE-----EeeeEEEEEE-cCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         134 IEL-HGKITSLDLSKGKYYFVFAEG---------FKV-----QCDFTRAVFV-VDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       134 ~~~-~~~v~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~-~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      +.. ...+..+.++++..+++...+         ...     ......++|. ++++.|+.++.+ .+.-++.+++++.+
T Consensus       213 ~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          213 FTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLEH  291 (296)
T ss_dssp             ECCSSSCCCSEEEBTTSCEEEEETTEEEEECTTSCEEEEEECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCBCCC
T ss_pred             eeCCCCCCCeEEECCCCCEEEEcCCeEEEECCCCCEEEEEECCCCceeEEEECCCCCEEEEEcCC-eEEEEEcccccccc
Confidence            211 112334455544333332211         000     0013456674 778888888776 45556776655544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.87  E-value=1.3e-06  Score=68.54  Aligned_cols=66  Identities=12%  Similarity=0.006  Sum_probs=44.7

Q ss_pred             ceEEcCCCCEEEEEeC--CCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891           2 CAKFLGDPTKVVSGSC--DRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~--D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      .++|+|||++|+.+..  +++|.++|+.+.+.............++.....+++.+.||.+-+.++..
T Consensus       141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCC
Confidence            3689999999988874  68999999998764322111111122333445677777888888888876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.87  E-value=1.8e-07  Score=78.98  Aligned_cols=173  Identities=10%  Similarity=0.007  Sum_probs=94.9

Q ss_pred             ceEEcCCCCEEEEEeCCCc-------------EEEEeCCCCC----eEEecC---cCceEEEEeCCCCEEEEecCCC---
Q psy8891           2 CAKFLGDPTKVVSGSCDRT-------------LKIWDLRSTE----TKFAGS---SCNDLVTYDGAGTTIISGHFDK---   58 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~-------------v~lwdl~~~~----~~~~~~---~~~~~~~~~~~~~~l~s~~~D~---   58 (203)
                      .++|+|||+.|+.++.|..             |++|++.++.    ..+...   .....+.++|+++.|+..+.++   
T Consensus       172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  251 (695)
T 2bkl_A          172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE  251 (695)
T ss_dssp             CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE
T ss_pred             ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc
Confidence            5789999999999999887             9999998754    222221   1223467899999888777665   


Q ss_pred             -eEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee---CCCeEEEEECCCCce--E
Q psy8891          59 -KVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH---FDKKVRFWDFRAEEK--V  131 (203)
Q Consensus        59 -~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s---~d~~i~iWd~~~~~~--~  131 (203)
                       .|.+||...++. ..+..+ ..+...                   .+ ++|..++...   .+++|.+||+.+++.  .
T Consensus       252 ~~l~~~~~~~~~~-~~l~~~~~~~~~~-------------------~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          252 NDVYWKRPGEKDF-RLLVKGVGAKYEV-------------------HA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             EEEEEECTTCSSC-EEEEECSSCCEEE-------------------EE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             eEEEEEcCCCCce-EEeecCCCceEEE-------------------Ee-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence             677776544432 222211 111111                   12 2333333332   246788888766542  1


Q ss_pred             EEEecc---ceEEEEEecCCcEEEEeecC------------eeEE-------eeeEEEEEEcCCCEEE----EecCCCcE
Q psy8891         132 RDIELH---GKITSLDLSKGKYYFVFAEG------------FKVQ-------CDFTRAVFVVDDDYVA----VGSIDGNI  185 (203)
Q Consensus       132 ~~~~~~---~~v~~~~~~~~~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~~l~----s~s~d~~v  185 (203)
                      ..+..+   ..+..+.+..+..++.....            ....       ..+....++++++.++    +....++|
T Consensus       311 ~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v  390 (695)
T 2bkl_A          311 KEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI  390 (695)
T ss_dssp             EEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred             eEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence            222221   23555555555544432211            0000       0011122446676655    33446789


Q ss_pred             EEEeCCCcee
Q psy8891         186 YVWDCNTEQV  195 (203)
Q Consensus       186 ~~wd~~~~~~  195 (203)
                      ++||+.+++.
T Consensus       391 ~~~d~~~g~~  400 (695)
T 2bkl_A          391 YKTSVSTGKS  400 (695)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCcE
Confidence            9999988774

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.86  E-value=4.7e-06  Score=65.29  Aligned_cols=73  Identities=5%  Similarity=-0.052  Sum_probs=53.4

Q ss_pred             eEEcCCCCEEEEEe----------CCCcEEEEeCCCCCeEEe--cC--------cCceEEEEeCCCCEEEEecC--CCeE
Q psy8891           3 AKFLGDPTKVVSGS----------CDRTLKIWDLRSTETKFA--GS--------SCNDLVTYDGAGTTIISGHF--DKKV   60 (203)
Q Consensus         3 ~~~~~~~~~l~t~s----------~D~~v~lwdl~~~~~~~~--~~--------~~~~~~~~~~~~~~l~s~~~--D~~i   60 (203)
                      ++|+||+++|+.+.          .+++|.+||+.+.+....  ..        ....-+.++|++++|+.+..  ++.|
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v  150 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV  150 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence            67999999998886          378899999987543211  11        11123678999999998874  5789


Q ss_pred             EEEECCCceEEEe-eee
Q psy8891          61 RFWDFRAEEKVRD-IEL   76 (203)
Q Consensus        61 ~vwd~~~~~~~~~-~~~   76 (203)
                      -++| .+++.+.+ +..
T Consensus       151 ~viD-~t~~~~~~~i~~  166 (373)
T 2mad_H          151 GLVV-QGGSSDDQLLSS  166 (373)
T ss_pred             EEEE-CCCCEEeEEcCC
Confidence            9999 98887766 544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.84  E-value=1.2e-05  Score=60.73  Aligned_cols=179  Identities=8%  Similarity=0.030  Sum_probs=104.2

Q ss_pred             ceEEcCCC-CEEEEEeCCCcEEEEeCCCCCeE-EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee---
Q psy8891           2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTETK-FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL---   76 (203)
Q Consensus         2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~---   76 (203)
                      +..|++++ ..+++...++.|..||..+.+.. .........+++.++++++++.  ++.|.+||..+++.......   
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~   94 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDND   94 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTT
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCC
Confidence            35688855 45667778899999999876543 2222333456788999866654  67899999987764322221   


Q ss_pred             --CCeEEEEEecCCCceEEEec-----------CCc---------------------eEEEEcCCCCEEEE-eeCCCeEE
Q psy8891          77 --HGKITSLDLSKGTETKFAGS-----------SCN---------------------DLVTYDGAGTTIIS-GHFDKKVR  121 (203)
Q Consensus        77 --~~~v~~~~~~~~~~~~~~~~-----------~~~---------------------~~~~~~~~~~~l~s-~s~d~~i~  121 (203)
                        ...+..+.+.+++...+...           ...                     .-++|+|+++.|+. .+.++.|.
T Consensus        95 ~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~  174 (297)
T 3g4e_A           95 KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVD  174 (297)
T ss_dssp             CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEE
Confidence              12356666666655332211           000                     11457777776543 44567788


Q ss_pred             EEEC--CCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         122 FWDF--RAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       122 iWd~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                      +||+  .++.....-.    ..  .+..         .   ......+++.+++.+.++...++.|..||.++|+++.++
T Consensus       175 ~~~~d~~~G~~~~~~~----~~--~~~~---------~---~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          175 AFDYDLQTGQISNRRS----VY--KLEK---------E---EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV  236 (297)
T ss_dssp             EEEECTTTCCEEEEEE----EE--ECCG---------G---GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred             EEeccCCCCcccCcEE----EE--ECCC---------C---CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence            8876  3443211000    00  0000         0   001123445677877777777788999999989988877


Q ss_pred             c
Q psy8891         200 K  200 (203)
Q Consensus       200 ~  200 (203)
                      +
T Consensus       237 ~  237 (297)
T 3g4e_A          237 K  237 (297)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.84  E-value=4.9e-07  Score=67.95  Aligned_cols=130  Identities=13%  Similarity=0.127  Sum_probs=89.1

Q ss_pred             CCEEEEecCCCeEEEEECCCceEEEeeeeCC--eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEEC
Q psy8891          48 GTTIISGHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDF  125 (203)
Q Consensus        48 ~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~  125 (203)
                      ++.|++++.|+.|.+||..+++.++++..+.  .+..+                   .+.|+|++++  +.++.|..||.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~-------------------~~~pdG~ilv--s~~~~V~~~d~   63 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSV-------------------AATKAGEILF--SYSKGAKMITR   63 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEE-------------------EECTTSCEEE--ECBSEEEEECT
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCe-------------------EECCCCCEEE--eCCCCEEEECC
Confidence            5799999999999999999999888776543  23333                   3556777777  45778999998


Q ss_pred             CCCceEEEEecc--ceEEEEEecCCcEEEEeecC--eeE-----------Eee-----------eEEEEEEcCCCEEEEe
Q psy8891         126 RAEEKVRDIELH--GKITSLDLSKGKYYFVFAEG--FKV-----------QCD-----------FTRAVFVVDDDYVAVG  179 (203)
Q Consensus       126 ~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~--~~~-----------~~~-----------~~~~~~~~~~~~l~s~  179 (203)
                       +++.+..+...  ..+.+....++..+++...+  ..+           ...           ...+...++++++++.
T Consensus        64 -~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~  142 (276)
T 3no2_A           64 -DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL  142 (276)
T ss_dssp             -TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred             -CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence             78888777764  34555555554433333221  110           000           0112356789999999


Q ss_pred             cCCCcEEEEeCCCceeeeeec
Q psy8891         180 SIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       180 s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ..++.|+.||.+ |+.+.++.
T Consensus       143 ~~~~~v~~~d~~-G~~~w~~~  162 (276)
T 3no2_A          143 FATSEVREIAPN-GQLLNSVK  162 (276)
T ss_dssp             TTTTEEEEECTT-SCEEEEEE
T ss_pred             cCCCEEEEECCC-CCEEEEEE
Confidence            999999999998 99888775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.81  E-value=2.6e-06  Score=65.35  Aligned_cols=154  Identities=10%  Similarity=0.013  Sum_probs=103.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCC--eE-Eec--------C--cCceEEEEeC-CCCEEEEec-CCCeEEEEECC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TK-FAG--------S--SCNDLVTYDG-AGTTIISGH-FDKKVRFWDFR   66 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~--~~-~~~--------~--~~~~~~~~~~-~~~~l~s~~-~D~~i~vwd~~   66 (203)
                      .++++++|..+++.+.++.|++||.....  .. ...        .  ....-+++++ +++.+++.+ .++.|++|| .
T Consensus        95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~  173 (329)
T 3fvz_A           95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-P  173 (329)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-T
T ss_pred             EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-C
Confidence            46889999999999999999999987542  22 110        0  0123467888 788888876 699999999 5


Q ss_pred             CceEEEeeeeC-----------CeEEEEEecCC-CceEEEecCCceEEEEcCC-CCEEEEe-------------------
Q psy8891          67 AEEKVRDIELH-----------GKITSLDLSKG-TETKFAGSSCNDLVTYDGA-GTTIISG-------------------  114 (203)
Q Consensus        67 ~~~~~~~~~~~-----------~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~l~s~-------------------  114 (203)
                      +++.+..+...           .....+++.++ +...++......+..|+++ |+.+.+.                   
T Consensus       174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~  253 (329)
T 3fvz_A          174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFL  253 (329)
T ss_dssp             TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred             CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEE
Confidence            56655555321           12788899987 5544555556666677765 4433221                   


Q ss_pred             -----------eCCCeEEEEECCCCceEEEEec----cceEEEEEecCCcEEEEeec
Q psy8891         115 -----------HFDKKVRFWDFRAEEKVRDIEL----HGKITSLDLSKGKYYFVFAE  156 (203)
Q Consensus       115 -----------s~d~~i~iWd~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~  156 (203)
                                 ..+.+|++||..+++.+..+..    -..+..+.++++..+++...
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~  310 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA  310 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC
Confidence                       2234899999999988877631    23478888888876666543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.80  E-value=1.5e-06  Score=69.00  Aligned_cols=174  Identities=13%  Similarity=0.083  Sum_probs=105.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCC--eEEEEECCCceEEEee---
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDK--KVRFWDFRAEEKVRDI---   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~--~i~vwd~~~~~~~~~~---   74 (203)
                      .++|++++..+++...++.|+.||+.+....  ........ ++++++++.|+.++.++  .|.++|...+.....+   
T Consensus       135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~  213 (409)
T 3hrp_A          135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQL  213 (409)
T ss_dssp             EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC
T ss_pred             EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeec
Confidence            4678899998888888899999999875542  22222223 77889999999888876  7888887654432222   


Q ss_pred             -e-eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe---c--cceE--E-EEE
Q psy8891          75 -E-LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE---L--HGKI--T-SLD  144 (203)
Q Consensus        75 -~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~---~--~~~v--~-~~~  144 (203)
                       . ....+..                   +.++|++..|+.+..+++|+.||..++... .+.   .  ....  . .+.
T Consensus       214 ~~~~~~~p~~-------------------iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia  273 (409)
T 3hrp_A          214 GSTFSGKIGA-------------------VALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLI  273 (409)
T ss_dssp             CTTSCSCCCB-------------------CEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEE
T ss_pred             cchhcCCcEE-------------------EEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEE
Confidence             0 0011122                   345664345555667788999998766432 220   1  1111  1 566


Q ss_pred             ecC-CcEEEEeecCe-eE-----------E-------------------eeeEEEEEEcCCCEEEEec-CCCcEEEEeCC
Q psy8891         145 LSK-GKYYFVFAEGF-KV-----------Q-------------------CDFTRAVFVVDDDYVAVGS-IDGNIYVWDCN  191 (203)
Q Consensus       145 ~~~-~~~~~~~~~~~-~~-----------~-------------------~~~~~~~~~~~~~~l~s~s-~d~~v~~wd~~  191 (203)
                      +++ +..+++..... .+           .                   .....+++.+++.++++-+ .++.|+.||+.
T Consensus       274 ~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          274 YYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred             EeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence            665 34444332110 00           0                   0133467788999888888 89999999987


Q ss_pred             Cceee
Q psy8891         192 TEQVE  196 (203)
Q Consensus       192 ~~~~~  196 (203)
                      +|++.
T Consensus       354 ~G~v~  358 (409)
T 3hrp_A          354 DGYVS  358 (409)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            77754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.80  E-value=3.1e-08  Score=84.26  Aligned_cols=116  Identities=7%  Similarity=-0.010  Sum_probs=79.3

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC--
Q psy8891          41 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD--  117 (203)
Q Consensus        41 ~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--  117 (203)
                      .+.|.|++++++++  |++|++||+.+++....+..+.. ...              ....-..|+|||+.|+.++.+  
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Spdg~~l~~~~~~~~   84 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFG--------------HSINDYSISPDGQFILLEYNYVK   84 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCC--------------SCCCEEEECTTSSEEEEEEEEEE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhc--------------ccccceEECCCCCEEEEEECCee
Confidence            36789999888886  99999999999887555443320 000              000114678899999988876  


Q ss_pred             -------CeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         118 -------KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       118 -------~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                             +.+.+||+.+++...-.....                        ......++|||+.|+.+ .|++|++||+
T Consensus        85 ~~r~~~~~~~~~~d~~~~~~~~l~~~~~------------------------~~~~~~~SPdG~~la~~-~~~~i~~~~~  139 (740)
T 4a5s_A           85 QWRHSYTASYDIYDLNKRQLITEERIPN------------------------NTQWVTWSPVGHKLAYV-WNNDIYVKIE  139 (740)
T ss_dssp             CSSSCEEEEEEEEETTTTEECCSSCCCT------------------------TEEEEEECSSTTCEEEE-ETTEEEEESS
T ss_pred             eEEEccceEEEEEECCCCcEEEcccCCC------------------------cceeeEECCCCCEEEEE-ECCeEEEEEC
Confidence                   455699999876432111011                        12345678999999887 5789999999


Q ss_pred             CCceeee
Q psy8891         191 NTEQVEA  197 (203)
Q Consensus       191 ~~~~~~~  197 (203)
                      .+++..+
T Consensus       140 ~~~~~~~  146 (740)
T 4a5s_A          140 PNLPSYR  146 (740)
T ss_dssp             TTSCCEE
T ss_pred             CCCceEE
Confidence            9887665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.79  E-value=8.5e-06  Score=61.42  Aligned_cols=177  Identities=8%  Similarity=-0.007  Sum_probs=98.2

Q ss_pred             ceEEcCCCCEEEE-------EeCCCcEEEEeCCCCCeEE-ec-----C-cCceEEEEeCC-CCEEEEecCCCeEEEEECC
Q psy8891           2 CAKFLGDPTKVVS-------GSCDRTLKIWDLRSTETKF-AG-----S-SCNDLVTYDGA-GTTIISGHFDKKVRFWDFR   66 (203)
Q Consensus         2 ~~~~~~~~~~l~t-------~s~D~~v~lwdl~~~~~~~-~~-----~-~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~   66 (203)
                      +++|++++..+++       +..++.|..||..+++... ..     . .....+.++++ ++++++. ..+.|.+||..
T Consensus        22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~  100 (314)
T 1pjx_A           22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD  100 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT
T ss_pred             CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC
Confidence            4678899988888       6788999999987765422 11     1 11233567777 5544444 44579999987


Q ss_pred             CceEEEe-eeeC-----CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC---------------CeEEEEEC
Q psy8891          67 AEEKVRD-IELH-----GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD---------------KKVRFWDF  125 (203)
Q Consensus        67 ~~~~~~~-~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---------------~~i~iWd~  125 (203)
                       ++.... ....     ..+..                   +.++++|++.++...+               +.|..||.
T Consensus       101 -g~~~~~~~~~~~~~~~~~~~~-------------------i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (314)
T 1pjx_A          101 -GTFEEIAKKDSEGRRMQGCND-------------------CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             -SCEEECCSBCTTSCBCBCCCE-------------------EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             -CCEEEEEeccCCCccccCCcC-------------------EEECCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence             554322 1110     11223                   3455566655555443               45666665


Q ss_pred             CCCceEEEEeccceEEEEEec----CCc-EEEEeec-------------Cee----EE--------eeeEEEEEEcCCCE
Q psy8891         126 RAEEKVRDIELHGKITSLDLS----KGK-YYFVFAE-------------GFK----VQ--------CDFTRAVFVVDDDY  175 (203)
Q Consensus       126 ~~~~~~~~~~~~~~v~~~~~~----~~~-~~~~~~~-------------~~~----~~--------~~~~~~~~~~~~~~  175 (203)
                      . ++.............+.++    ++. .+++...             +..    ..        .....+++.+++.+
T Consensus       161 ~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  239 (314)
T 1pjx_A          161 D-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL  239 (314)
T ss_dssp             T-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred             C-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence            4 4432222111223444444    433 2222111             100    00        11233556778888


Q ss_pred             EEEecCCCcEEEEeCCCceeeeeec
Q psy8891         176 VAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       176 l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      +++...++.|.+||.++++.+..+.
T Consensus       240 ~v~~~~~~~i~~~d~~~g~~~~~~~  264 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDGGQPKMRIR  264 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCSEEEE
T ss_pred             EEEEcCCCEEEEEcCCCCcEeEEEe
Confidence            8887788999999998787766654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.78  E-value=1.5e-06  Score=64.98  Aligned_cols=132  Identities=12%  Similarity=0.129  Sum_probs=88.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-Eec---CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAG---SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~---~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      ++++.+++..+++.+.++.|++||....... ...   ......++++++++.+++...++.|++||.. ++.+..+..+
T Consensus       125 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~  203 (286)
T 1q7f_A          125 GVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGE  203 (286)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCT
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccC
Confidence            4678999998888888999999997643322 211   1122446788888888888889999999974 3444444322


Q ss_pred             C---eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCC-eEEEEECCCCceEEEEeccc---eEEEEEecCCcE
Q psy8891          78 G---KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK-KVRFWDFRAEEKVRDIELHG---KITSLDLSKGKY  150 (203)
Q Consensus        78 ~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-~i~iWd~~~~~~~~~~~~~~---~v~~~~~~~~~~  150 (203)
                      +   .+.                   -++++++|+++++...++ .|++||. +++.+..+..+.   .+..+.++++..
T Consensus       204 g~~~~p~-------------------~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~  263 (286)
T 1q7f_A          204 GITNYPI-------------------GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS  263 (286)
T ss_dssp             TTSCSEE-------------------EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred             CccCCCc-------------------EEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCc
Confidence            1   122                   245677787788777776 9999995 466666665432   266777777665


Q ss_pred             EEEe
Q psy8891         151 YFVF  154 (203)
Q Consensus       151 ~~~~  154 (203)
                      +++.
T Consensus       264 l~vs  267 (286)
T 1q7f_A          264 VVLA  267 (286)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.76  E-value=5.2e-07  Score=71.00  Aligned_cols=122  Identities=12%  Similarity=0.103  Sum_probs=79.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      .++|  |+..|+.+ .++.|++||+.+....   ......  +..+.+....++.+..||.+.+||+..+....   ...
T Consensus        92 ~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~--v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~---~~~  163 (388)
T 1xip_A           92 FVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKP--VFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ---LAQ  163 (388)
T ss_dssp             EEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSC--EEEEEECSSEEEEEETTSEEEEEETTTCCEEE---EEE
T ss_pred             EEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecc--eeeEEecCCCEEEEECCCCEEEEEccCCcccc---ccC
Confidence            4677  88999998 8899999999764321   111111  11212222348999999999999998776542   112


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce--EEEEe----------ccceEEEEEec
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--VRDIE----------LHGKITSLDLS  146 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~--~~~~~----------~~~~v~~~~~~  146 (203)
                      .|.+                   ++|+|.|  ++.+..|+++++|+...++.  .+++.          ...++.++.+.
T Consensus       164 ~Vs~-------------------v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl  222 (388)
T 1xip_A          164 NVTS-------------------FDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL  222 (388)
T ss_dssp             SEEE-------------------EEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES
T ss_pred             CceE-------------------EEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe
Confidence            3444                   4566677  56788899999998887665  44551          13457777766


Q ss_pred             CCcEEE
Q psy8891         147 KGKYYF  152 (203)
Q Consensus       147 ~~~~~~  152 (203)
                      ++..++
T Consensus       223 ~~~~fl  228 (388)
T 1xip_A          223 SPQDFL  228 (388)
T ss_dssp             SSSEEE
T ss_pred             cCCeEE
Confidence            554443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.75  E-value=8.1e-07  Score=69.76  Aligned_cols=122  Identities=16%  Similarity=0.093  Sum_probs=85.4

Q ss_pred             EEcCCCCEEEEEeC-----CCcEEEEeCCCCCeE---EecCcCceEEEEeCCCCEEEEec----------CCCeEEEEEC
Q psy8891           4 KFLGDPTKVVSGSC-----DRTLKIWDLRSTETK---FAGSSCNDLVTYDGAGTTIISGH----------FDKKVRFWDF   65 (203)
Q Consensus         4 ~~~~~~~~l~t~s~-----D~~v~lwdl~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~----------~D~~i~vwd~   65 (203)
                      ...|++.+++....     +++|.+.|..+.+..   ..+..+ . +.++|+++.|+.++          .++.|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            34689999888766     689999999886643   223333 3 78899999887765          4678999999


Q ss_pred             CCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEeccc
Q psy8891          66 RAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDIELHG  138 (203)
Q Consensus        66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--d~~i~iWd~~~~~~~~~~~~~~  138 (203)
                      .+.+.+.++.....          .....+ .....+.++|||++++.+..  +++|.++|+.+++.+.++...+
T Consensus       117 ~t~~v~~~I~v~~g----------~r~~~g-~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g  180 (386)
T 3sjl_D          117 VTLLPTADIELPDA----------PRFLVG-TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD  180 (386)
T ss_dssp             TTCCEEEEEEETTC----------CCCCBS-CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             CCCeEEEEEECCCc----------cccccC-CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence            99888777643210          000000 01112567889998888864  6899999999999888886654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.73  E-value=1.7e-06  Score=73.06  Aligned_cols=172  Identities=13%  Similarity=0.096  Sum_probs=106.4

Q ss_pred             eEEcCCCCEEEEEeCCC-------------------cEEEEeCCCCCeE--EecCc----------CceEEEEeCCC---
Q psy8891           3 AKFLGDPTKVVSGSCDR-------------------TLKIWDLRSTETK--FAGSS----------CNDLVTYDGAG---   48 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~-------------------~v~lwdl~~~~~~--~~~~~----------~~~~~~~~~~~---   48 (203)
                      .++.+++..++.++.++                   +|..+|.++++..  +....          ...++....++   
T Consensus       248 ~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~  327 (677)
T 1kb0_A          248 MTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR  327 (677)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE
T ss_pred             eeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe
Confidence            46778888888887664                   5999999987753  21111          11122223356   


Q ss_pred             CEEEEecCCCeEEEEECCCceEEEeeeeCC--eEEEEEecCCCceEE------------E-----ecCCceEEEEcCCCC
Q psy8891          49 TTIISGHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLSKGTETKF------------A-----GSSCNDLVTYDGAGT  109 (203)
Q Consensus        49 ~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~------------~-----~~~~~~~~~~~~~~~  109 (203)
                      ..|+.++.+|.+.++|.++++.+.......  ....++  ..+..+.            .     |...-....|+|+..
T Consensus       328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d--~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD--KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC--TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             eEEEEECCCCEEEEEECCCCCEeccccccccCcccccC--CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence            589999999999999999999877654321  111111  1111000            0     001111245677766


Q ss_pred             EEEEeeC-------------------------------------------CCeEEEEECCCCceEEEEeccceEEEEEec
Q psy8891         110 TIISGHF-------------------------------------------DKKVRFWDFRAEEKVRDIELHGKITSLDLS  146 (203)
Q Consensus       110 ~l~s~s~-------------------------------------------d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~  146 (203)
                      .++....                                           .+.|..||+.+++.+..+.......     
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~-----  480 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWN-----  480 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCC-----
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCc-----
Confidence            6666432                                           2678888888877666554322110     


Q ss_pred             CCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         147 KGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                         ...+..++..++.++.|+.+++||.++|+++..++
T Consensus       481 -------------------~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          481 -------------------GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             -------------------CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -------------------CcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence                               11233467788889999999999999999998876

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.71  E-value=3.4e-06  Score=71.35  Aligned_cols=175  Identities=10%  Similarity=0.124  Sum_probs=105.3

Q ss_pred             ceEEcCCCCEEEEEeCCCc-------------------EEEEeCCCCCeE--EecC-c-------CceEE--EEeCCCC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRT-------------------LKIWDLRSTETK--FAGS-S-------CNDLV--TYDGAGT-   49 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~-------------------v~lwdl~~~~~~--~~~~-~-------~~~~~--~~~~~~~-   49 (203)
                      .+.+.|+..+++.++.+++                   |..+|.++++.+  +... .       ....+  ....+++ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            3567888889999888764                   999999988753  2111 0       01111  1222443 


Q ss_pred             --EEEEecCCCeEEEEECCCceEEEeeeeCC--eEEEEEec--------------CCCceEEE-----ecCCceEEEEcC
Q psy8891          50 --TIISGHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLS--------------KGTETKFA-----GSSCNDLVTYDG  106 (203)
Q Consensus        50 --~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~--------------~~~~~~~~-----~~~~~~~~~~~~  106 (203)
                        .|+.++.+|.++++|.++++.+.......  ....++..              ++....+.     |...-.-..|+|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              78999999999999999999875443321  11111100              11111110     001111245666


Q ss_pred             CCCEEEEeeC---------------------------------------------CCeEEEEECCCCceEEEEeccceEE
Q psy8891         107 AGTTIISGHF---------------------------------------------DKKVRFWDFRAEEKVRDIELHGKIT  141 (203)
Q Consensus       107 ~~~~l~s~s~---------------------------------------------d~~i~iWd~~~~~~~~~~~~~~~v~  141 (203)
                      +..+++....                                             +++|+.||+.+++....+..+... 
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-  477 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-  477 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-
Confidence            6666665422                                             467778888777766555443211 


Q ss_pred             EEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         142 SLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                             ....+...+..++.|+.|+.++.||.++|+++-.++
T Consensus       478 -----------------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          478 -----------------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             -----------------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -----------------------cCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence                                   011233467788999999999999999999998775

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.62  E-value=2.5e-08  Score=78.10  Aligned_cols=133  Identities=11%  Similarity=0.104  Sum_probs=66.0

Q ss_pred             CCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          47 AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        47 ~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                      ++..|++++.|+.|+.||..+++.++.+.. +.+.+..                   +..++..+++++.|+.|+.||..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p-------------------~~~~g~~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVP-------------------THVEEPAFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------------------------CCEEECTTTCCEEEC---
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecc-------------------eEcCCCEEEEeCCCCEEEEEECC
Confidence            467999999999999999999998877654 2221110                   11244566777788888888888


Q ss_pred             CCceEEEEeccce--EEE-EEe-cCC--------cEEEEe--ecCeeE-Eeee-EEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         127 AEEKVRDIELHGK--ITS-LDL-SKG--------KYYFVF--AEGFKV-QCDF-TRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       127 ~~~~~~~~~~~~~--v~~-~~~-~~~--------~~~~~~--~~~~~~-~~~~-~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      +++.+..++.+..  +.+ ..+ ..+        ..+...  ..+... .... ....++|+++.+++++.|+.|+.||.
T Consensus        68 tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~~~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           68 NNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             --CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------EEEEEEEEEEECCCS
T ss_pred             CCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccccCCEEEEEecCCEEEEEEC
Confidence            7776554432210  000 000 000        001110  001000 0000 01234567788999999999999999


Q ss_pred             CCceeeeee
Q psy8891         191 NTEQVEAVL  199 (203)
Q Consensus       191 ~~~~~~~~~  199 (203)
                      ++|+++-.+
T Consensus       148 ~tG~~~W~~  156 (369)
T 2hz6_A          148 KTRELRWNA  156 (369)
T ss_dssp             SSSSCCCEE
T ss_pred             CCCCEEEeE
Confidence            999887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.62  E-value=1.3e-05  Score=59.45  Aligned_cols=156  Identities=16%  Similarity=0.108  Sum_probs=94.7

Q ss_pred             EEcCCCCEEEEEeCCC--cEEEEeCCCCCeEEec--CcCceEEEEeCCCCEEEEec-CCCeEEEEECCCceEEEeeeeCC
Q psy8891           4 KFLGDPTKVVSGSCDR--TLKIWDLRSTETKFAG--SSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEKVRDIELHG   78 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~--~v~lwdl~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~-~D~~i~vwd~~~~~~~~~~~~~~   78 (203)
                      .|+ ++....+.+.+|  .|+.+|+++++.....  ....-.....++++.|+... .++.+.+||..+.+.+.++...+
T Consensus        49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~  127 (262)
T 3nol_A           49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG  127 (262)
T ss_dssp             EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC
Confidence            456 666667777766  8999999998754321  11111111223345555554 58899999999999888876532


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCe
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGF  158 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  158 (203)
                      .-..                     +.+++..|+....+.+|.++|..+.+.+..++....        ++.        
T Consensus       128 eG~g---------------------lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~--------g~~--------  170 (262)
T 3nol_A          128 EGWG---------------------LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH--------GEE--------  170 (262)
T ss_dssp             CCCC---------------------EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET--------TEE--------
T ss_pred             CceE---------------------EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC--------Ccc--------
Confidence            1111                     122445566665678999999998887776654210        000        


Q ss_pred             eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         159 KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                        ......+.+ .+++.++..-.+..|.+-|..+|+++.++.
T Consensus       171 --~~~lNELe~-~~G~lyan~w~~~~I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          171 --LPELNELEW-VDGEIFANVWQTNKIVRIDPETGKVTGIID  209 (262)
T ss_dssp             --CCCEEEEEE-ETTEEEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred             --ccccceeEE-ECCEEEEEEccCCeEEEEECCCCcEEEEEE
Confidence              000011112 255555555568899999999999998875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.59  E-value=2.7e-06  Score=71.94  Aligned_cols=108  Identities=14%  Similarity=0.136  Sum_probs=67.0

Q ss_pred             ceEEcCCCCEEE-----EEeCCCcEEEEeCCCCCeEEe-cCcC-ceEEEEeCCCCEEEEecCCCe-------------EE
Q psy8891           2 CAKFLGDPTKVV-----SGSCDRTLKIWDLRSTETKFA-GSSC-NDLVTYDGAGTTIISGHFDKK-------------VR   61 (203)
Q Consensus         2 ~~~~~~~~~~l~-----t~s~D~~v~lwdl~~~~~~~~-~~~~-~~~~~~~~~~~~l~s~~~D~~-------------i~   61 (203)
                      .++|||||++|+     .|+.+.+|++||+.+++.... .... ...+.|+ |++.|+.++.|..             |+
T Consensus       133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~  211 (693)
T 3iuj_A          133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVY  211 (693)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEE
T ss_pred             EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEE
Confidence            358999999887     344456899999998774321 1111 1235788 9998888887743             99


Q ss_pred             EEECCCceE----EEeeee-C-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee----CCCeEEEEECCCCc
Q psy8891          62 FWDFRAEEK----VRDIEL-H-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH----FDKKVRFWDFRAEE  129 (203)
Q Consensus        62 vwd~~~~~~----~~~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s----~d~~i~iWd~~~~~  129 (203)
                      +|++.++..    +..... + ..+..+                   .|+|||++|+...    .+..|.++|+.++.
T Consensus       212 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~-------------------~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          212 FHRLGTAQEDDRLVFGAIPAQHHRYVGA-------------------TVTEDDRFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             EEETTSCGGGCEEEESCSGGGCCSEEEE-------------------EECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             EEECCCCcccceEEEecCCCCCeEEEEE-------------------EEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence            999877542    111111 1 112333                   3566666553322    23589999997653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.59  E-value=4.6e-06  Score=70.94  Aligned_cols=150  Identities=16%  Similarity=0.092  Sum_probs=85.5

Q ss_pred             ceEEcCCCCEEEEEeCCC-----cEEEEeCCCC--C--eEEecCcCceEEEEeCCCCEEEEecC----CCeEEEEECCCc
Q psy8891           2 CAKFLGDPTKVVSGSCDR-----TLKIWDLRST--E--TKFAGSSCNDLVTYDGAGTTIISGHF----DKKVRFWDFRAE   68 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~-----~v~lwdl~~~--~--~~~~~~~~~~~~~~~~~~~~l~s~~~----D~~i~vwd~~~~   68 (203)
                      .+.|+|||++|+..+.++     .|.+||+.++  +  .............+.++++.|+..+.    .+.|.+||+..+
T Consensus       272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            467999999988877554     8999999765  3  22222111111223477887776665    345999998774


Q ss_pred             e-EEEeeee-CC-eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC-CCceEEEEecc--ceEEE
Q psy8891          69 E-KVRDIEL-HG-KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR-AEEKVRDIELH--GKITS  142 (203)
Q Consensus        69 ~-~~~~~~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~-~~~~~~~~~~~--~~v~~  142 (203)
                      . ....+.. +. .+..++                   +. ++.++++...|+..++|.+. ++...+.+..+  +.+..
T Consensus       352 ~~~~~~l~~~~~~~l~~~~-------------------~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~  411 (741)
T 1yr2_A          352 TPRFDTVVPESKDNLESVG-------------------IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASG  411 (741)
T ss_dssp             SCEEEEEECCCSSEEEEEE-------------------EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEE
T ss_pred             ccccEEEecCCCCeEEEEE-------------------EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEE
Confidence            2 2222221 11 122222                   22 34578888889988887554 45545544432  22333


Q ss_pred             EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEE----EecCCCcEEEEeCCCcee
Q psy8891         143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVA----VGSIDGNIYVWDCNTEQV  195 (203)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----s~s~d~~v~~wd~~~~~~  195 (203)
                      ++.                        +++++.|+    +....++|++||+.+++.
T Consensus       412 ~~~------------------------s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          412 LSG------------------------RPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEC------------------------CBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eec------------------------CCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            332                        34444333    233467899999988763

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.58  E-value=8.8e-05  Score=56.74  Aligned_cols=123  Identities=11%  Similarity=-0.028  Sum_probs=73.5

Q ss_pred             ceEEcCCCC-EEEEEeCCCcEEEEeCCCCCeE-EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee---
Q psy8891           2 CAKFLGDPT-KVVSGSCDRTLKIWDLRSTETK-FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL---   76 (203)
Q Consensus         2 ~~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~---   76 (203)
                      +.+|+|++. .+++...++.|..||..+++.. .........+.+.++++++++. . ..|.+||..+++.......   
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~  130 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESD  130 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTT
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCC
Confidence            357888754 5667777899999999876532 2222223345677888777664 3 4599999877764322111   


Q ss_pred             --CCeEEEEEecCCCceEEEec--------------------------CCceEEEEcCCCCEEEEe-eCCCeEEEEECC
Q psy8891          77 --HGKITSLDLSKGTETKFAGS--------------------------SCNDLVTYDGAGTTIISG-HFDKKVRFWDFR  126 (203)
Q Consensus        77 --~~~v~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~l~s~-s~d~~i~iWd~~  126 (203)
                        ...+..+.+.+++...+...                          ....-++|+++|+.++.+ +.++.|.+||+.
T Consensus       131 ~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          131 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence              12356666666654322211                          011124677888766544 446788888875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.53  E-value=3.8e-05  Score=57.80  Aligned_cols=155  Identities=7%  Similarity=0.068  Sum_probs=90.5

Q ss_pred             ceEEcCCCCEEEEEeCC---------------CcEEEEeCCCCCeE--EecCcCceEEEEe----CCCCEE-EEecCCCe
Q psy8891           2 CAKFLGDPTKVVSGSCD---------------RTLKIWDLRSTETK--FAGSSCNDLVTYD----GAGTTI-ISGHFDKK   59 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D---------------~~v~lwdl~~~~~~--~~~~~~~~~~~~~----~~~~~l-~s~~~D~~   59 (203)
                      ++++.++|...++.+.+               +.|..||.. ++..  .........+.++    ++++.| ++...++.
T Consensus       121 ~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~  199 (314)
T 1pjx_A          121 DCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK  199 (314)
T ss_dssp             EEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred             CEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence            56788999888877665               567777765 3322  1111122345677    887655 45467899


Q ss_pred             EEEEECC-CceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc
Q psy8891          60 VRFWDFR-AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG  138 (203)
Q Consensus        60 i~vwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~  138 (203)
                      |.+||+. .++... .      ..+...+...     .....-++++++|++.++...++.|.+||..+++....+..+.
T Consensus       200 i~~~~~~~~g~~~~-~------~~~~~~~~~~-----~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~  267 (314)
T 1pjx_A          200 LWSYDIKGPAKIEN-K------KVWGHIPGTH-----EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF  267 (314)
T ss_dssp             EEEEEEEETTEEEE-E------EEEEECCCCS-----SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS
T ss_pred             EEEEECCCCCcccc-c------eEEEECCCCC-----CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC
Confidence            9999976 332110 0      0000001000     0001124677888888877778999999988776555443321


Q ss_pred             eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCC-EEEEecCCCcEEEEeCCC
Q psy8891         139 KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD-YVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       139 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~v~~wd~~~  192 (203)
                      .                       ....+++.++++ .+++...++.|..|++..
T Consensus       268 ~-----------------------~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          268 E-----------------------KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             S-----------------------CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             C-----------------------CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            0                       123445567888 445556678999999875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.52  E-value=1.3e-05  Score=59.55  Aligned_cols=155  Identities=12%  Similarity=0.013  Sum_probs=95.1

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCc--eEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeE
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCN--DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKI   80 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~--~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v   80 (203)
                      .|+ ++....+.+.++.|+.+|+++++.... .....  .-+...+ +...+..-.++.+.+||..+.+.+.++...+.-
T Consensus        61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG  138 (268)
T 3nok_A           61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG  138 (268)
T ss_dssp             EEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC
T ss_pred             EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce
Confidence            344 455667788889999999998764221 11111  1133332 234444457889999999999988887653221


Q ss_pred             EEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeE
Q psy8891          81 TSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKV  160 (203)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  160 (203)
                      ..                     ..++++.|+.+..+++|.++|..+.+.+..++....-..+                 
T Consensus       139 wG---------------------Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v-----------------  180 (268)
T 3nok_A          139 WG---------------------LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV-----------------  180 (268)
T ss_dssp             CC---------------------EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC-----------------
T ss_pred             eE---------------------EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc-----------------
Confidence            11                     1224556766667889999999998877766542100000                 


Q ss_pred             EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       161 ~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                       .....+.+ .+++.++..-.+..|.+-|..+|+++.++.
T Consensus       181 -~~lNeLe~-~dG~lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          181 -ELINELEC-ANGVIYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             -CCEEEEEE-ETTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             -ccccccEE-eCCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence             00011112 255555555568889999999999998875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.50  E-value=0.00013  Score=54.18  Aligned_cols=170  Identities=8%  Similarity=-0.005  Sum_probs=94.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-Eec---CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAG---SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~---~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-   76 (203)
                      ++++.++|...++...++.|..||.. ++.. ...   ......+++++++...++...++.|..||.. ++. ..+.. 
T Consensus        19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~   95 (299)
T 2z2n_A           19 GITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLP   95 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECS
T ss_pred             ceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCC
Confidence            46778999988877778999999988 4432 221   1122345677888888887778999999976 322 22221 


Q ss_pred             --CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc---ceEEEEEecCCcEE
Q psy8891          77 --HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH---GKITSLDLSKGKYY  151 (203)
Q Consensus        77 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~---~~v~~~~~~~~~~~  151 (203)
                        ...+..+.                   ++++|+..++...++.|..||. +++.. .+...   ..+..+.+.++..+
T Consensus        96 ~~~~~~~~i~-------------------~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l  154 (299)
T 2z2n_A           96 NPDSAPYGIT-------------------EGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNAL  154 (299)
T ss_dssp             STTCCEEEEE-------------------ECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCE
T ss_pred             CcCCCceeeE-------------------ECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCE
Confidence              11233333                   4445555555555566666666 33322 22111   23455555443322


Q ss_pred             EEeec--Ce---------eEE-------eeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         152 FVFAE--GF---------KVQ-------CDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       152 ~~~~~--~~---------~~~-------~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      ++...  +.         ...       .....+.+.+++..+++...++.|..||. +++..
T Consensus       155 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  216 (299)
T 2z2n_A          155 WFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT  216 (299)
T ss_dssp             EEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             EEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence            22211  00         000       01224456677777777667788888888 56544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.50  E-value=8.1e-05  Score=55.47  Aligned_cols=157  Identities=7%  Similarity=-0.012  Sum_probs=95.1

Q ss_pred             eEEcCCCCEEEEEeC--CCcEEEEeCCCCCeEEec--Cc--CceEEEEeCCCCEEEEe-cCCCeEEEEECCCceEEEeee
Q psy8891           3 AKFLGDPTKVVSGSC--DRTLKIWDLRSTETKFAG--SS--CNDLVTYDGAGTTIISG-HFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~--D~~v~lwdl~~~~~~~~~--~~--~~~~~~~~~~~~~l~s~-~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      +.|++|+...++.+.  +++|++.|+.+++.....  ..  ....+.+.  ++.|+.+ -.++.+.++|..+.+.+.++.
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~  103 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFT  103 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEE
Confidence            567888644444443  689999999987754221  11  11223333  4455444 467899999999988877764


Q ss_pred             eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEee
Q psy8891          76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  155 (203)
                      ..        .+.+.            .+++||+.++.+..+++|.+.|..+.+.++.+.....-..             
T Consensus       104 ~g--------~~~g~------------glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p-------------  150 (266)
T 2iwa_A          104 HQ--------MKDGW------------GLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR-------------  150 (266)
T ss_dssp             CC--------SSSCC------------EEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE-------------
T ss_pred             CC--------CCCeE------------EEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc-------------
Confidence            32        01111            1233555566666788999999998887766653210000             


Q ss_pred             cCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                           ......+.+. ++..++....++.|.+-|..++++++++.
T Consensus       151 -----~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          151 -----VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             -----CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             -----cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence                 0001122233 55445555568899999999999998875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.49  E-value=0.00014  Score=54.03  Aligned_cols=87  Identities=7%  Similarity=-0.008  Sum_probs=54.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec---CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe-ee-e
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG---SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD-IE-L   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~---~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~-~~-~   76 (203)
                      ++++.+++...++...++.|..||..........   ......+.+++++...++...++.|.+||. +++.... .. .
T Consensus        61 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~  139 (299)
T 2z2n_A           61 CLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK  139 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             eEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence            4677889988888777899999998632222221   112234567788888888778899999998 4433221 11 1


Q ss_pred             CCeEEEEEecCCC
Q psy8891          77 HGKITSLDLSKGT   89 (203)
Q Consensus        77 ~~~v~~~~~~~~~   89 (203)
                      ...+..+++.+++
T Consensus       140 ~~~~~~i~~~~~g  152 (299)
T 2z2n_A          140 GSYPSFITLGSDN  152 (299)
T ss_dssp             TCCEEEEEECTTS
T ss_pred             CCCCceEEEcCCC
Confidence            1235555555544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.42  E-value=0.00017  Score=57.51  Aligned_cols=124  Identities=13%  Similarity=0.125  Sum_probs=81.7

Q ss_pred             eEEcCCCCEEEEEeCC------CcEEEEeCCCCCeEEecC---cC---ceEEEEeCCCCEEEEecC--------------
Q psy8891           3 AKFLGDPTKVVSGSCD------RTLKIWDLRSTETKFAGS---SC---NDLVTYDGAGTTIISGHF--------------   56 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D------~~v~lwdl~~~~~~~~~~---~~---~~~~~~~~~~~~l~s~~~--------------   56 (203)
                      ++.+|+| ..+|+..+      +.|-+.|..+.+....-.   ..   .--+.++|+.+.++|..+              
T Consensus       143 ~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~  221 (462)
T 2ece_A          143 VHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH  221 (462)
T ss_dssp             EEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred             eeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence            4678999 77776666      789999999876543211   11   111557899999999863              


Q ss_pred             -----CCeEEEEECCCceEEEeeeeC---CeEEEEEe--cCCCceEEEecC-----------------------------
Q psy8891          57 -----DKKVRFWDFRAEEKVRDIELH---GKITSLDL--SKGTETKFAGSS-----------------------------   97 (203)
Q Consensus        57 -----D~~i~vwd~~~~~~~~~~~~~---~~v~~~~~--~~~~~~~~~~~~-----------------------------   97 (203)
                           +.+|.+||+.+++.+.++...   ....-+.|  +|++...+..+.                             
T Consensus       222 ~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~  301 (462)
T 2ece_A          222 LKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIP  301 (462)
T ss_dssp             HHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             hhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCC
Confidence                 789999999988777777653   12233333  666544332221                             


Q ss_pred             --------------------CceEEEEcCCCCEEEEeeC-CCeEEEEECCC
Q psy8891          98 --------------------CNDLVTYDGAGTTIISGHF-DKKVRFWDFRA  127 (203)
Q Consensus        98 --------------------~~~~~~~~~~~~~l~s~s~-d~~i~iWd~~~  127 (203)
                                          ...-+.+++||++|+.+.+ .+.|.++|+..
T Consensus       302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                                1123557888998888877 46999999863

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.42  E-value=4.5e-05  Score=58.79  Aligned_cols=184  Identities=14%  Similarity=0.046  Sum_probs=100.4

Q ss_pred             ceEEcCCCCEEEEEe--CCCcEEEEeCCCCCeE-Eec--------CcCceEEEEeCCCCEEEEecC-----CCeEEEEEC
Q psy8891           2 CAKFLGDPTKVVSGS--CDRTLKIWDLRSTETK-FAG--------SSCNDLVTYDGAGTTIISGHF-----DKKVRFWDF   65 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s--~D~~v~lwdl~~~~~~-~~~--------~~~~~~~~~~~~~~~l~s~~~-----D~~i~vwd~   65 (203)
                      .++++++|+.+++..  .++.++||.+..++.. +..        .....-+++++++++.++-..     ++.|.+||+
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~  100 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT  100 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence            467899999988864  2343667766433222 100        011233567787765444322     579999999


Q ss_pred             CCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEE-EEee---CCCeEEEEECCCCceEEEEec-----
Q psy8891          66 RAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTI-ISGH---FDKKVRFWDFRAEEKVRDIEL-----  136 (203)
Q Consensus        66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s---~d~~i~iWd~~~~~~~~~~~~-----  136 (203)
                      .+++.++.+.....+     .+..      . ...-+.+++++..+ ++-.   .++.|.+||+.+++..+.+..     
T Consensus       101 ~tg~~~~~~~~~~~~-----~~~~------~-~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~  168 (343)
T 2qe8_A          101 LNNQLSRVIYLPPPI-----TLSN------S-FVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA  168 (343)
T ss_dssp             TTTEEEEEEECCTTT-----SCTT------C-CCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred             CCCeEEEEEECChhh-----cccc------c-ccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence            988866655432110     0000      0 00112344433333 4433   567888888877665443311     


Q ss_pred             -------------------------cceEEEEEecCCcE-EEEee-cCeeE------------------------Ee---
Q psy8891         137 -------------------------HGKITSLDLSKGKY-YFVFA-EGFKV------------------------QC---  162 (203)
Q Consensus       137 -------------------------~~~v~~~~~~~~~~-~~~~~-~~~~~------------------------~~---  162 (203)
                                               ...++.+.++++.. ++... .+..+                        ..   
T Consensus       169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g  248 (343)
T 2qe8_A          169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP  248 (343)
T ss_dssp             CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC
T ss_pred             ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC
Confidence                                     01246677776642 22221 11000                        00   


Q ss_pred             eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      ....+++++++.++++...++.|.+||..+|+...
T Consensus       249 ~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~  283 (343)
T 2qe8_A          249 ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKL  283 (343)
T ss_dssp             SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEE
Confidence            11235677888889998899999999985566543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.41  E-value=2.8e-05  Score=60.49  Aligned_cols=153  Identities=10%  Similarity=-0.002  Sum_probs=96.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeE--EecCc--------CceE-EEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGSS--------CNDL-VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~--------~~~~-~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      ++..++.++.++.|..+|..+++..  .....        .... .....++..|+.++.++.|..+|..+++.+.....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            4667888889999999999887653  11110        1111 11112456888889999999999999988766554


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeec
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAE  156 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  156 (203)
                      ...+..       .         .+  .  .+..++.++.++.|..+|..+++.+........+.......         
T Consensus       132 ~~~~~~-------~---------p~--~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~---------  182 (376)
T 3q7m_A          132 AGEALS-------R---------PV--V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES---------  182 (376)
T ss_dssp             SSCCCS-------C---------CE--E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC---------
T ss_pred             CCceEc-------C---------CE--E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC---------
Confidence            332100       0         00  0  12367778889999999999998877765543221110000         


Q ss_pred             CeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         157 GFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                               ...  ..+..++.++.++.+..+|..+|+.+-..+
T Consensus       183 ---------~~~--~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~  215 (376)
T 3q7m_A          183 ---------APT--TAFGAAVVGGDNGRVSAVLMEQGQMIWQQR  215 (376)
T ss_dssp             ---------CCE--EETTEEEECCTTTEEEEEETTTCCEEEEEE
T ss_pred             ---------CcE--EECCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence                     000  124567788889999999999998876543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.40  E-value=3e-05  Score=65.30  Aligned_cols=174  Identities=7%  Similarity=0.093  Sum_probs=102.2

Q ss_pred             eEEcCCCCEEEEEeCCCc-------------------EEEEeCCCCCeE--EecC----------cCceEEEEeCCCC--
Q psy8891           3 AKFLGDPTKVVSGSCDRT-------------------LKIWDLRSTETK--FAGS----------SCNDLVTYDGAGT--   49 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~-------------------v~lwdl~~~~~~--~~~~----------~~~~~~~~~~~~~--   49 (203)
                      .++.++...++.++.++.                   |..+|.++++.+  +...          ....+..+..+++  
T Consensus       235 ~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~  314 (668)
T 1kv9_A          235 MAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR  314 (668)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE
T ss_pred             eEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE
Confidence            467788888888887763                   999999988753  2111          0111112223454  


Q ss_pred             -EEEEecCCCeEEEEECCCceEEEeeeeCC--eEEEEEecC-----------CCceEEE-----ecCCceEEEEcCCCCE
Q psy8891          50 -TIISGHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLSK-----------GTETKFA-----GSSCNDLVTYDGAGTT  110 (203)
Q Consensus        50 -~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~  110 (203)
                       .|+.++.+|.+.++|.++++.+.......  ....++...           +......     +...-....|+|+...
T Consensus       315 ~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~  394 (668)
T 1kv9_A          315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL  394 (668)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred             EEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCE
Confidence             68999999999999999999875543322  011111000           0000000     0000011345555444


Q ss_pred             EEE------------------------------------eeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEe
Q psy8891         111 IIS------------------------------------GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF  154 (203)
Q Consensus       111 l~s------------------------------------~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  154 (203)
                      ++.                                    ..+++.|..||+.+++............             
T Consensus       395 ~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~-------------  461 (668)
T 1kv9_A          395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN-------------  461 (668)
T ss_dssp             EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC-------------
T ss_pred             EEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCc-------------
Confidence            432                                    2245789999998888766654332110             


Q ss_pred             ecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         155 AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                 ...+...+.+++.|+.|+.++.||.++|+++..++
T Consensus       462 -----------~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          462 -----------GGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             -----------CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -----------CceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence                       01122367788889999999999999999988774

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.39  E-value=0.00021  Score=52.37  Aligned_cols=154  Identities=12%  Similarity=0.042  Sum_probs=91.7

Q ss_pred             EEcCCCCEEEEEeCC--CcEEEEeCCCCCeEEec--CcC--ceEEEEeCCCCEEE-EecCCCeEEEEECCCceEEEeeee
Q psy8891           4 KFLGDPTKVVSGSCD--RTLKIWDLRSTETKFAG--SSC--NDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D--~~v~lwdl~~~~~~~~~--~~~--~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      .|+. +....+.+.+  ..|+.+|+.+++.....  ...  ..-+...  ++.|+ ..-.++.+.+||..+.+.+.++..
T Consensus        27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~  103 (243)
T 3mbr_X           27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRY  103 (243)
T ss_dssp             EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence            3454 4555566654  48999999998754321  111  1122333  34444 445688999999999998888765


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeec
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAE  156 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  156 (203)
                      .+.-..+                     .+++..|+.+..+++|.++|..+.+.++.++....         ...+    
T Consensus       104 ~~~Gwgl---------------------t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~---------g~~~----  149 (243)
T 3mbr_X          104 PGEGWAL---------------------TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG---------GRPL----  149 (243)
T ss_dssp             SSCCCEE---------------------EECSSCEEEECSSSEEEEECTTTCCEEEEEECEET---------TEEC----
T ss_pred             CCCceEE---------------------eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC---------Cccc----
Confidence            4321111                     12344555555688999999999887776654210         0000    


Q ss_pred             CeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         157 GFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                           .....+.+ .+++.++..-.+..|.+-|..+|+++.++.
T Consensus       150 -----~~lNeLe~-~~G~lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          150 -----DNLNELEW-VNGELLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             -----CCEEEEEE-ETTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             -----ccceeeEE-eCCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence                 00001111 245545444467789999999999998875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.37  E-value=7.7e-05  Score=59.42  Aligned_cols=174  Identities=13%  Similarity=0.043  Sum_probs=104.8

Q ss_pred             CCCCEEEEEeCC-----CcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEec----------CCCeEEEEECCCc
Q psy8891           7 GDPTKVVSGSCD-----RTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGH----------FDKKVRFWDFRAE   68 (203)
Q Consensus         7 ~~~~~l~t~s~D-----~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~----------~D~~i~vwd~~~~   68 (203)
                      +++.+++.....     ++|.+.|+.+.+...   .+..+  -+.++|+++.|+.+.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            466766665543     699999998866432   23333  477899999887775          4779999999999


Q ss_pred             eEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEeccceEEE----
Q psy8891          69 EKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDIELHGKITS----  142 (203)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--d~~i~iWd~~~~~~~~~~~~~~~v~~----  142 (203)
                      +.+.++...+.-..          ..+ ....-+.++|||++++.+..  +++|.+.|+.+++.+.++...+....    
T Consensus       160 ~vv~~I~v~g~~r~----------~~g-~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g  228 (426)
T 3c75_H          160 LPIADIELPDAPRF----------LVG-TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPAS  228 (426)
T ss_dssp             CEEEEEEETTCCCC----------CBS-CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE
T ss_pred             cEEEEEECCCcccc----------ccC-CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCC
Confidence            88777654210000          000 00011457889999998875  57999999999998888776432111    


Q ss_pred             ----EEecCC-cEEEEeecCeeEEe------------eeEEEEEEcCCCEEEEecCCCcEEEEeCCCc
Q psy8891         143 ----LDLSKG-KYYFVFAEGFKVQC------------DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTE  193 (203)
Q Consensus       143 ----~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~  193 (203)
                          +.++++ ....+......+..            .+....+.++++.++..+..+.|.+.|...+
T Consensus       229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~  296 (426)
T 3c75_H          229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE  296 (426)
T ss_dssp             TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred             CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence                122222 22212111111100            0012345677777666677889999998643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.36  E-value=8.5e-05  Score=56.14  Aligned_cols=64  Identities=13%  Similarity=0.069  Sum_probs=45.3

Q ss_pred             eEEcCCCC-EEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCCeEEEEECC
Q psy8891           3 AKFLGDPT-KVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR   66 (203)
Q Consensus         3 ~~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~   66 (203)
                      ..|+|+++ .++++..++.|..|+.......+. .......+.++++++++++...++.|.+||..
T Consensus        50 p~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            57899998 677888899999999843322222 22223446788899877776667899999975

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.35  E-value=8.7e-05  Score=54.57  Aligned_cols=151  Identities=9%  Similarity=0.032  Sum_probs=90.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-C--cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee-C
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-S--SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-H   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~--~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~-~   77 (203)
                      ++++.+++..+++.. ++.|..||.......... .  .....++++++++..++...++.|.+||............ .
T Consensus        71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  149 (270)
T 1rwi_B           71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL  149 (270)
T ss_dssp             CEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC
T ss_pred             eeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccC
Confidence            577889988666655 899999998764432211 1  1223466788888888877889999998655433221111 1


Q ss_pred             CeEEEEEecCCCceEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                      ..+..+++.+++...++....                       ..-++++++|...++...++.|.+||....... ..
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~  228 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VL  228 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-EC
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-ee
Confidence            234455555554422221111                       123567888877777777889999998754432 22


Q ss_pred             ecc--ceEEEEEecCCcEEEEe
Q psy8891         135 ELH--GKITSLDLSKGKYYFVF  154 (203)
Q Consensus       135 ~~~--~~v~~~~~~~~~~~~~~  154 (203)
                      ...  ..+..+.++++..+++.
T Consensus       229 ~~~~~~~p~~i~~~~~g~l~v~  250 (270)
T 1rwi_B          229 PFTGLNTPLAVAVDSDRTVYVA  250 (270)
T ss_dssp             CCCSCSCEEEEEECTTCCEEEE
T ss_pred             ccCCCCCceeEEECCCCCEEEE
Confidence            221  34777787765555444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.33  E-value=0.00011  Score=57.03  Aligned_cols=176  Identities=8%  Similarity=0.009  Sum_probs=96.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeE--EecC-cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEE
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLD   84 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~-~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~   84 (203)
                      ++..++.++.|+.|..+|..+++..  .... ........  .+..++.++.++.+..+|.++++.+.......++..+.
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            5567888899999999999987753  1111 11111112  24588888899999999999998877665443321110


Q ss_pred             ecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce-----------EEEE-EecCCcEEE
Q psy8891          85 LSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-----------ITSL-DLSKGKYYF  152 (203)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~-----------v~~~-~~~~~~~~~  152 (203)
                      .  ...         .+  .  .+..++.++.++.|..+|..+++.+........           +... .+..+..++
T Consensus       180 ~--~~~---------~~--~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~  244 (376)
T 3q7m_A          180 G--ESA---------PT--T--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA  244 (376)
T ss_dssp             C--CCC---------CE--E--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE
T ss_pred             C--CCC---------cE--E--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE
Confidence            0  000         00  0  123566777788888888888877665543211           0000 011111111


Q ss_pred             ---------Eee-cCeeE-Eeee-EEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         153 ---------VFA-EGFKV-QCDF-TRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       153 ---------~~~-~~~~~-~~~~-~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                               ... .+... .... .......++..++.++.++.|..+|..+|+.+-..+
T Consensus       245 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          245 LAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             EecCcEEEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence                     110 11100 0000 001122356788888899999999999998876543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.32  E-value=0.00026  Score=56.06  Aligned_cols=68  Identities=15%  Similarity=0.074  Sum_probs=46.0

Q ss_pred             eEEcCCCCEEEEEeCCC--cEEEEeCCCCCe--EE----e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891           3 AKFLGDPTKVVSGSCDR--TLKIWDLRSTET--KF----A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK   70 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~--~v~lwdl~~~~~--~~----~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~   70 (203)
                      ++|++++..|+.++.++  .|.++|......  ..    . .......++++|++..|+.+..++.|+.||...+..
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~  252 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV  252 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE
Confidence            67899999999988876  788888765332  12    1 111122356788555666677789999999876653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.32  E-value=0.00026  Score=53.46  Aligned_cols=51  Identities=10%  Similarity=0.074  Sum_probs=32.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-Eec----C--cCceEEEEeCCCCEEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAG----S--SCNDLVTYDGAGTTIIS   53 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~----~--~~~~~~~~~~~~~~l~s   53 (203)
                      .++++++|+.+++...++.|..||.. ++.. ...    .  ....-+.++++++..+|
T Consensus        90 gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t  147 (305)
T 3dr2_A           90 GNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT  147 (305)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred             eeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence            46788999977766667889999986 3321 111    0  01122567888888886

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.28  E-value=0.00016  Score=61.01  Aligned_cols=66  Identities=14%  Similarity=0.122  Sum_probs=45.4

Q ss_pred             ceEEcCCCCEEEEEeCCCc-------------EEEEeCCCCC----eEEecCc--C--ceEEEEeCCCCEEE-Eec---C
Q psy8891           2 CAKFLGDPTKVVSGSCDRT-------------LKIWDLRSTE----TKFAGSS--C--NDLVTYDGAGTTII-SGH---F   56 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~-------------v~lwdl~~~~----~~~~~~~--~--~~~~~~~~~~~~l~-s~~---~   56 (203)
                      .++|+ |++.|+.++.|..             |++|++.+..    ..+....  .  ...+.++++++.|+ +.+   .
T Consensus       179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  257 (693)
T 3iuj_A          179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS  257 (693)
T ss_dssp             CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred             cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence            46899 9999999888854             9999997643    2232222  1  22356899999764 332   3


Q ss_pred             CCeEEEEECCCc
Q psy8891          57 DKKVRFWDFRAE   68 (203)
Q Consensus        57 D~~i~vwd~~~~   68 (203)
                      +..|.++|+.++
T Consensus       258 ~~~i~~~d~~~~  269 (693)
T 3iuj_A          258 GNRLYVKDLSQE  269 (693)
T ss_dssp             CCEEEEEETTST
T ss_pred             CcEEEEEECCCC
Confidence            368999999765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.26  E-value=0.00021  Score=57.03  Aligned_cols=115  Identities=15%  Similarity=0.193  Sum_probs=74.3

Q ss_pred             CCCCEE-EEEeCCCcEEEEeCCCCC--e-EEecC-----------cCceEEEEeCCCCEEEEecCC------CeEEEEEC
Q psy8891           7 GDPTKV-VSGSCDRTLKIWDLRSTE--T-KFAGS-----------SCNDLVTYDGAGTTIISGHFD------KKVRFWDF   65 (203)
Q Consensus         7 ~~~~~l-~t~s~D~~v~lwdl~~~~--~-~~~~~-----------~~~~~~~~~~~~~~l~s~~~D------~~i~vwd~   65 (203)
                      ++.++| ++|-.++.|.+.|+.+..  . .....           ..-.-+...|++ .++|+..+      +.+-+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            677765 557778999999997531  1 11100           000113456787 77777655      78999999


Q ss_pred             CCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-------------------CCCeEEEEECC
Q psy8891          66 RAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-------------------FDKKVRFWDFR  126 (203)
Q Consensus        66 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-------------------~d~~i~iWd~~  126 (203)
                      ++.+.+.++.....       +        .....-+.|+|+++.+++..                   ++.+|.+||+.
T Consensus       172 ~T~~v~~~~~~~~~-------~--------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~  236 (462)
T 2ece_A          172 YSFEPLGKWEIDRG-------D--------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR  236 (462)
T ss_dssp             TTCCEEEECCSBCT-------T--------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred             CCCeEEEEEccCCC-------C--------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence            98888777653211       0        00011145678888888885                   36899999999


Q ss_pred             CCceEEEEecc
Q psy8891         127 AEEKVRDIELH  137 (203)
Q Consensus       127 ~~~~~~~~~~~  137 (203)
                      +++.+.++...
T Consensus       237 ~~k~~~tI~vg  247 (462)
T 2ece_A          237 KRKRIHSLTLG  247 (462)
T ss_dssp             TTEEEEEEESC
T ss_pred             CCcEeeEEecC
Confidence            88877777763

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.20  E-value=0.00014  Score=60.32  Aligned_cols=158  Identities=14%  Similarity=0.102  Sum_probs=89.3

Q ss_pred             CcEEEEeCCCCCeEE--ecCc---------CceEE-EEe-CCCC---EEEEecCCCeEEEEECCCceEEEeeeeCCe---
Q psy8891          19 RTLKIWDLRSTETKF--AGSS---------CNDLV-TYD-GAGT---TIISGHFDKKVRFWDFRAEEKVRDIELHGK---   79 (203)
Q Consensus        19 ~~v~lwdl~~~~~~~--~~~~---------~~~~~-~~~-~~~~---~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~---   79 (203)
                      ++|..+|..+++.+-  ....         ...++ ... .+++   .|+.++.+|.+.++|.++++.+........   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            589999999877532  1110         01122 221 4563   788999999999999999998876654321   


Q ss_pred             EEEEEecCC-------------------CceEEE-----ecCCceEEEEcCCCCEEEEee--------------------
Q psy8891          80 ITSLDLSKG-------------------TETKFA-----GSSCNDLVTYDGAGTTIISGH--------------------  115 (203)
Q Consensus        80 v~~~~~~~~-------------------~~~~~~-----~~~~~~~~~~~~~~~~l~s~s--------------------  115 (203)
                      ...++....                   ......     +...-....|+|+...++...                    
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence            122211100                   000000     000011234555544444432                    


Q ss_pred             -------------CCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCC
Q psy8891         116 -------------FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSID  182 (203)
Q Consensus       116 -------------~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  182 (203)
                                   .++.|..||+.+++.+.+........                        .......+..++.|+.|
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~------------------------~g~~~tagglvf~g~~d  506 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLW------------------------AGVLATAGNLVFTGTGD  506 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCC------------------------SCCEEETTTEEEEECTT
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCc------------------------ccceEeCCCEEEEECCC
Confidence                         24677777777777665544321110                        00011246678889999


Q ss_pred             CcEEEEeCCCceeeeeec
Q psy8891         183 GNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       183 ~~v~~wd~~~~~~~~~~~  200 (203)
                      +.++.||.++|+++-.++
T Consensus       507 g~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          507 GYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             SEEEEEETTTCCEEEEEE
T ss_pred             CcEEEEECCCCCEEEEec
Confidence            999999999999987765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.19  E-value=0.00045  Score=53.13  Aligned_cols=73  Identities=15%  Similarity=0.013  Sum_probs=46.4

Q ss_pred             ceEEcCCCCEEEEEeC-----CCcEEEEeCCCCCeE--EecC-------cCceEEEEeCCCCE-EEEec---CCCeEEEE
Q psy8891           2 CAKFLGDPTKVVSGSC-----DRTLKIWDLRSTETK--FAGS-------SCNDLVTYDGAGTT-IISGH---FDKKVRFW   63 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-----D~~v~lwdl~~~~~~--~~~~-------~~~~~~~~~~~~~~-l~s~~---~D~~i~vw   63 (203)
                      .+++.++++..++-+.     ++.|.+||+.+++..  ....       ....-+++++++.. .++-.   .++.|.+|
T Consensus        71 gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           71 GIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             EEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred             EEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence            5788899876665443     689999999876532  1111       11133566765444 45544   68899999


Q ss_pred             ECCCceEEEee
Q psy8891          64 DFRAEEKVRDI   74 (203)
Q Consensus        64 d~~~~~~~~~~   74 (203)
                      |+.+++..+.+
T Consensus       151 d~~~g~~~r~~  161 (343)
T 2qe8_A          151 DLQTGLAARVL  161 (343)
T ss_dssp             ETTTCCEEEEC
T ss_pred             ECCCCCEEEEe
Confidence            99877655443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.18  E-value=0.00097  Score=50.09  Aligned_cols=142  Identities=12%  Similarity=0.037  Sum_probs=80.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ecC---cC--ceEEEEeCCCCEEEEecC---------CCeEEEEEC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AGS---SC--NDLVTYDGAGTTIISGHF---------DKKVRFWDF   65 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~---~~--~~~~~~~~~~~~l~s~~~---------D~~i~vwd~   65 (203)
                      +++++++++.+++.  ++.|.+||..+++...  ...   ..  ..-+.++++++..++...         ....+||.+
T Consensus        58 ~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~  135 (297)
T 3g4e_A           58 SVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSL  135 (297)
T ss_dssp             EEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEE
T ss_pred             EEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEE
Confidence            46789999955553  5789999998755321  111   11  123567889886665422         234566665


Q ss_pred             CCc-eEEEeeeeCCeEEEEEecCCCceEEEe-cCCc------------------------------eEEEEcCCCCEEEE
Q psy8891          66 RAE-EKVRDIELHGKITSLDLSKGTETKFAG-SSCN------------------------------DLVTYDGAGTTIIS  113 (203)
Q Consensus        66 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~------------------------------~~~~~~~~~~~l~s  113 (203)
                      ... +.......-.....+++++++..++.. ....                              .-++++++|++.++
T Consensus       136 d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva  215 (297)
T 3g4e_A          136 FPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA  215 (297)
T ss_dssp             CTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE
T ss_pred             ECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE
Confidence            432 222222222234566777766544321 1111                              11345667776666


Q ss_pred             eeCCCeEEEEECCCCceEEEEecc-ceEEEEEe
Q psy8891         114 GHFDKKVRFWDFRAEEKVRDIELH-GKITSLDL  145 (203)
Q Consensus       114 ~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~  145 (203)
                      ...++.|..||..+++.+..+..+ ..+.++.+
T Consensus       216 ~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f  248 (297)
T 3g4e_A          216 CYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCF  248 (297)
T ss_dssp             EETTTEEEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred             EcCCCEEEEEcCCCceEEEEEECCCCCceEEEE
Confidence            666778888998888877777655 33444443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.15  E-value=0.001  Score=49.30  Aligned_cols=67  Identities=7%  Similarity=-0.113  Sum_probs=47.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-ecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-AGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~   70 (203)
                      ++.+.+++...++...++.|..||.. ++... ...   .....+.++++++..++...++.|..||.. ++.
T Consensus        24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             eeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            46678899888887788999999987 44321 111   122335667888888877778899999987 443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.11  E-value=6.1e-05  Score=55.80  Aligned_cols=113  Identities=16%  Similarity=0.198  Sum_probs=75.3

Q ss_pred             EEEeCCCCEEEEecCCC--eEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-CC
Q psy8891          42 VTYDGAGTTIISGHFDK--KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-DK  118 (203)
Q Consensus        42 ~~~~~~~~~l~s~~~D~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~  118 (203)
                      +.++ ++.+..|.|.+|  .|+++|+++++.++.+..........+..                   ++..|+...+ ++
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~-------------------~g~~ly~ltw~~~  107 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD-------------------WKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE-------------------ETTEEEEEESSSS
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE-------------------eCCEEEEEEeeCC
Confidence            4566 566777888876  99999999999887776543322211111                   2334555554 78


Q ss_pred             eEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                      .+.++|..+.+.+.++.....-                          ..++++++.|+.+..++.|.++|..+.+.+++
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG--------------------------~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~  161 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEG--------------------------WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRT  161 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCC--------------------------CCEEECSSCEEECCSSSEEEEECTTTCSEEEE
T ss_pred             EEEEEECccCcEEEEEECCCCc--------------------------eEEecCCCEEEEECCCCeEEEEcCCCCeEEEE
Confidence            9999999999988887654310                          01224666666655577788899888888877


Q ss_pred             ec
Q psy8891         199 LK  200 (203)
Q Consensus       199 ~~  200 (203)
                      ++
T Consensus       162 I~  163 (262)
T 3nol_A          162 IT  163 (262)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.02  E-value=0.0013  Score=54.44  Aligned_cols=157  Identities=13%  Similarity=0.092  Sum_probs=87.6

Q ss_pred             cEEEEeCCCCCeE--EecC--------cC-ceEE-EEeCCCC---EEEEecCCCeEEEEECCCceEEEeeeeCCe---EE
Q psy8891          20 TLKIWDLRSTETK--FAGS--------SC-NDLV-TYDGAGT---TIISGHFDKKVRFWDFRAEEKVRDIELHGK---IT   81 (203)
Q Consensus        20 ~v~lwdl~~~~~~--~~~~--------~~-~~~~-~~~~~~~---~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~---v~   81 (203)
                      +|..+|.++++.+  +...        .. ..++ ....+++   .++.++.+|.+.+.|.++++.+........   ..
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            5889999887753  1111        01 1112 2223563   577889999999999999998776654321   11


Q ss_pred             EEEecCCC-------------ceEEE-----ecCCceEEEEcCCCCEEEEee----------------------------
Q psy8891          82 SLDLSKGT-------------ETKFA-----GSSCNDLVTYDGAGTTIISGH----------------------------  115 (203)
Q Consensus        82 ~~~~~~~~-------------~~~~~-----~~~~~~~~~~~~~~~~l~s~s----------------------------  115 (203)
                      .+++....             .....     +...-....|+|+...++...                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence            11111100             00000     000011234566655555543                            


Q ss_pred             ---------CCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEE
Q psy8891         116 ---------FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIY  186 (203)
Q Consensus       116 ---------~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~  186 (203)
                               .++.|..||+.+++.+.++.....+.                        ...+...+..++.++.|+.|+
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~------------------------~~~~~t~gg~v~~g~~dg~l~  488 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAW------------------------GGTLYTKGGLVWYATLDGYLK  488 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCC------------------------SBCEEETTTEEEEECTTSEEE
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecCCCCcc------------------------ceeEEECCCEEEEEcCCCeEE
Confidence                     24567777777776655543321110                        001122456777799999999


Q ss_pred             EEeCCCceeeeeec
Q psy8891         187 VWDCNTEQVEAVLK  200 (203)
Q Consensus       187 ~wd~~~~~~~~~~~  200 (203)
                      .+|.++|+++-.++
T Consensus       489 a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          489 ALDNKDGKELWNFK  502 (571)
T ss_dssp             EEETTTCCEEEEEE
T ss_pred             EEECCCCCEEEEEe
Confidence            99999999998775

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.01  E-value=7.6e-05  Score=55.39  Aligned_cols=112  Identities=10%  Similarity=0.057  Sum_probs=74.7

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEe-eCCCeE
Q psy8891          42 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISG-HFDKKV  120 (203)
Q Consensus        42 ~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~~i  120 (203)
                      +.++. +.+.+|.+.++.|+++|+++++.++.+ .........+..                   ++..|+.. -.++.+
T Consensus        60 L~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~-------------------~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           60 LVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS-------------------DGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE-------------------CSSCEEEEESSSCEE
T ss_pred             EEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE-------------------eCCEEEEEEccCCEE
Confidence            44553 567788899999999999999887766 444322211111                   12233333 357899


Q ss_pred             EEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         121 RFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       121 ~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .++|..+.+.+.++....+-                          ..++++++.|+.+..++.|.++|..+.+.+++++
T Consensus       119 ~V~D~~Tl~~~~ti~~~~eG--------------------------wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSGEG--------------------------WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             EEEETTTTEEEEEEECSSCC--------------------------CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             EEEECCcCcEEEEEeCCCce--------------------------eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence            99999999988887653210                          0122456676666678899999999988888775

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.98  E-value=0.0023  Score=47.36  Aligned_cols=87  Identities=6%  Similarity=-0.085  Sum_probs=54.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-EecC---cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe-ee-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAGS---SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD-IE-   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~~---~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~-~~-   75 (203)
                      ++++.+++...++...++.|..+|.. ++.. ....   .....+.++++++..++...++.|..+|.. ++.... +. 
T Consensus        66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~  143 (300)
T 2qc5_A           66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN  143 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred             eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC
Confidence            35677888887877778899999987 4432 2211   122345667888888887778899999987 443321 11 


Q ss_pred             eCCeEEEEEecCCCc
Q psy8891          76 LHGKITSLDLSKGTE   90 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~   90 (203)
                      ....+..+.+.+++.
T Consensus       144 ~~~~~~~i~~d~~g~  158 (300)
T 2qc5_A          144 KGSYPAFITLGSDNA  158 (300)
T ss_dssp             TTCCEEEEEECTTSS
T ss_pred             CCCCceeEEECCCCC
Confidence            113355566655544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.96  E-value=0.00022  Score=53.13  Aligned_cols=115  Identities=10%  Similarity=0.001  Sum_probs=73.1

Q ss_pred             EEEEeCCCCEEEEecC--CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC-C
Q psy8891          41 LVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF-D  117 (203)
Q Consensus        41 ~~~~~~~~~~l~s~~~--D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d  117 (203)
                      -+.+++++...++.+.  ++.|++.|+.+++.+..+..........                   +..++..|+.+.+ +
T Consensus        25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeG-------------------i~~~g~~lyv~t~~~   85 (266)
T 2iwa_A           25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEG-------------------LTLLNEKLYQVVWLK   85 (266)
T ss_dssp             EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEE-------------------EEEETTEEEEEETTC
T ss_pred             cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEE-------------------EEEeCCEEEEEEecC
Confidence            3667777655555453  6899999999999887765322111100                   1112334555544 6


Q ss_pred             CeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         118 KKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       118 ~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      +++.++|..+.+.+.++... ..-                          ..+++|++.++.+..+++|.+.|..+.+.+
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~g--------------------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~  139 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKDG--------------------------WGLATDGKILYGSDGTSILYEIDPHTFKLI  139 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSSC--------------------------CEEEECSSSEEEECSSSEEEEECTTTCCEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCe--------------------------EEEEECCCEEEEECCCCeEEEEECCCCcEE
Confidence            79999999998887776543 110                          113356666666556788999999888888


Q ss_pred             eeec
Q psy8891         197 AVLK  200 (203)
Q Consensus       197 ~~~~  200 (203)
                      ++++
T Consensus       140 ~~I~  143 (266)
T 2iwa_A          140 KKHN  143 (266)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.94  E-value=0.00033  Score=51.35  Aligned_cols=113  Identities=15%  Similarity=0.054  Sum_probs=74.6

Q ss_pred             EEEeCCCCEEEEecCCC--eEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCC
Q psy8891          42 VTYDGAGTTIISGHFDK--KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDK  118 (203)
Q Consensus        42 ~~~~~~~~~l~s~~~D~--~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~  118 (203)
                      +.+++ +.+..|.+.+|  .|+++|+.+++.++.+..........+..                   .+..|+... .++
T Consensus        26 L~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~-------------------~~~~ly~ltw~~~   85 (243)
T 3mbr_X           26 LFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA-------------------WRDRLIQLTWRNH   85 (243)
T ss_dssp             EEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE-------------------ETTEEEEEESSSS
T ss_pred             EEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE-------------------eCCEEEEEEeeCC
Confidence            45665 55677777764  99999999999887776554332222111                   122344333 478


Q ss_pred             eEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeee
Q psy8891         119 KVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       119 ~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~  198 (203)
                      .+.++|..+.+.+.++.....--                          .++++++.|+.+-.++.|.++|..+.+.+++
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~~Gw--------------------------glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~  139 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPGEGW--------------------------ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGS  139 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCC--------------------------EEEECSSCEEEECSSSEEEEECTTTCCEEEE
T ss_pred             EEEEEECCcCcEEEEEeCCCCce--------------------------EEeeCCCEEEEECCCCeEEEEeCCCCeEEEE
Confidence            99999999998888876543110                          1224555555555688899999999888887


Q ss_pred             ec
Q psy8891         199 LK  200 (203)
Q Consensus       199 ~~  200 (203)
                      ++
T Consensus       140 I~  141 (243)
T 3mbr_X          140 IK  141 (243)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.91  E-value=0.00011  Score=61.93  Aligned_cols=62  Identities=18%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             CeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891          58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        58 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      +.|..||+.+++.+.......++...                   .+..++..++.++.|+.+++||.++++.+..+...
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g-------------------~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGG-------------------TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCC-------------------EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCc-------------------ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            78999999988877766543221111                   12234567888899999999999999999988765


Q ss_pred             c
Q psy8891         138 G  138 (203)
Q Consensus       138 ~  138 (203)
                      .
T Consensus       518 ~  518 (677)
T 1kb0_A          518 T  518 (677)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.86  E-value=0.0033  Score=52.29  Aligned_cols=72  Identities=13%  Similarity=0.056  Sum_probs=47.3

Q ss_pred             EEcCCCCEEEEEeCC----------------CcEEEEeCCCCCeE--EecCcC---------ceEE-EEe-CCC---CEE
Q psy8891           4 KFLGDPTKVVSGSCD----------------RTLKIWDLRSTETK--FAGSSC---------NDLV-TYD-GAG---TTI   51 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D----------------~~v~lwdl~~~~~~--~~~~~~---------~~~~-~~~-~~~---~~l   51 (203)
                      ++.++..+++.+..+                ++|..+|.++++.+  +.....         ..++ ... .++   ..+
T Consensus       247 a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v  326 (599)
T 1w6s_A          247 AYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLL  326 (599)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEE
T ss_pred             eEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEE
Confidence            345666777776655                37899999987753  211111         1122 222 456   467


Q ss_pred             EEecCCCeEEEEECCCceEEEeee
Q psy8891          52 ISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus        52 ~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      +.++.+|.+.+.|.++++.+....
T Consensus       327 ~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          327 THPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCcEEEEEECCCCCEeeccc
Confidence            888999999999999999876654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.85  E-value=0.00013  Score=61.63  Aligned_cols=63  Identities=17%  Similarity=0.223  Sum_probs=46.2

Q ss_pred             CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891          57 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        57 D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      +++|+.||+.+++.+.....+.++...                   .+...+..++.++.|+.++.||.++|+.+.++++
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g-------------------~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGG-------------------TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCC-------------------EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCc-------------------cceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence            478999999998887766554322110                   1223456888999999999999999999988877


Q ss_pred             cc
Q psy8891         137 HG  138 (203)
Q Consensus       137 ~~  138 (203)
                      ..
T Consensus       515 ~~  516 (689)
T 1yiq_A          515 AS  516 (689)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.82  E-value=0.00085  Score=52.39  Aligned_cols=120  Identities=12%  Similarity=0.046  Sum_probs=76.3

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCe-EEec--------------CcCceEEEEeCCCCEEEEecC---------CCeEE
Q psy8891           6 LGDPTKVVSGSCDRTLKIWDLRSTET-KFAG--------------SSCNDLVTYDGAGTTIISGHF---------DKKVR   61 (203)
Q Consensus         6 ~~~~~~l~t~s~D~~v~lwdl~~~~~-~~~~--------------~~~~~~~~~~~~~~~l~s~~~---------D~~i~   61 (203)
                      ++++..++-.+. ++|.+.|+..... ....              ......+.++++++.++.+..         ++.+.
T Consensus       219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~  297 (368)
T 1mda_H          219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS  297 (368)
T ss_dssp             ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred             cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence            455555555556 8888888865321 1100              000112568899887776432         23566


Q ss_pred             EEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCC-EEEEee-CCCeEEEEECCCCceEEEEeccce
Q psy8891          62 FWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGT-TIISGH-FDKKVRFWDFRAEEKVRDIELHGK  139 (203)
Q Consensus        62 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s-~d~~i~iWd~~~~~~~~~~~~~~~  139 (203)
                      ++|+.+.+.+..+........+++                   +++|+ .+++.. .+++|.++|+.+++.++.+.....
T Consensus       298 ViD~~t~~vv~~i~vg~~p~gi~~-------------------s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~  358 (368)
T 1mda_H          298 SVTASVGQTSGPISNGHDSDAIIA-------------------AQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG  358 (368)
T ss_dssp             EEESSSCCEEECCEEEEEECEEEE-------------------CCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred             EEECCCCeEEEEEECCCCcceEEE-------------------CCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence            999999998887765444444444                   45554 556666 489999999999998888876554


Q ss_pred             EEEEEe
Q psy8891         140 ITSLDL  145 (203)
Q Consensus       140 v~~~~~  145 (203)
                      ...+.+
T Consensus       359 P~~i~~  364 (368)
T 1mda_H          359 PESLSV  364 (368)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            444443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.79  E-value=0.00078  Score=55.54  Aligned_cols=190  Identities=12%  Similarity=0.059  Sum_probs=119.1

Q ss_pred             CCCEEEEEe-CCCcEEEEeCCCCCeEE--ecC--cCceEEEE-e-CCCCEEEEec------------------CCCeEEE
Q psy8891           8 DPTKVVSGS-CDRTLKIWDLRSTETKF--AGS--SCNDLVTY-D-GAGTTIISGH------------------FDKKVRF   62 (203)
Q Consensus         8 ~~~~l~t~s-~D~~v~lwdl~~~~~~~--~~~--~~~~~~~~-~-~~~~~l~s~~------------------~D~~i~v   62 (203)
                      ||++|+... .+..|.+-|+.+.++..  ...  .....+++ . |++++|+.++                  .++.+-+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            788776544 45669999999866432  221  11223444 4 8888888884                  3568999


Q ss_pred             EECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCce---------------EEEE--------cCCCCEEEEeeCCCe
Q psy8891          63 WDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCND---------------LVTY--------DGAGTTIISGHFDKK  119 (203)
Q Consensus        63 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~~~~--------~~~~~~l~s~s~d~~  119 (203)
                      .|..+.+...++...+....+++++++..++..+....               +..+        .++|+....    +.
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i----~~  255 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL----NG  255 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE----TT
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE----Cc
Confidence            99999988888776555566778888887776654321               1111        234543332    45


Q ss_pred             EEEEECCC--Cce-EEEEeccceEEEEEecCCcE-EEEeecCe--e---------------------EE------eeeEE
Q psy8891         120 VRFWDFRA--EEK-VRDIELHGKITSLDLSKGKY-YFVFAEGF--K---------------------VQ------CDFTR  166 (203)
Q Consensus       120 i~iWd~~~--~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~---------------------~~------~~~~~  166 (203)
                      |.+.|.++  +.. +..+........+.++++.. +++...+.  .                     +.      .....
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h  335 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  335 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred             EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence            99999987  555 56666555666777777644 33322110  0                     00      12245


Q ss_pred             EEEEcCCCEEEEecCCCcEEEEeCCC----------ceeeeeecc
Q psy8891         167 AVFVVDDDYVAVGSIDGNIYVWDCNT----------EQVEAVLKD  201 (203)
Q Consensus       167 ~~~~~~~~~l~s~s~d~~v~~wd~~~----------~~~~~~~~~  201 (203)
                      +.|+++|...++...|+.|..||+.+          .+.+..+..
T Consensus       336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV  380 (595)
T 1fwx_A          336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV  380 (595)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred             EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence            67899994445566799999999876          556666543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.58  E-value=0.011  Score=43.31  Aligned_cols=90  Identities=9%  Similarity=0.017  Sum_probs=50.4

Q ss_pred             ceEEcCCCCEEE-EEeCCCcEEEEeCCCCCeE--Eec-CcCceEEEEeCCCCEEE-EecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVV-SGSCDRTLKIWDLRSTETK--FAG-SSCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~-t~s~D~~v~lwdl~~~~~~--~~~-~~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      .+++.+++..|+ +-..++.|..+|+.+....  ... ......+++++++..|+ +-...+.|.++|+...........
T Consensus        40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~  119 (267)
T 1npe_A           40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT  119 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC
Confidence            456788666555 4455789999998764322  111 12223466777655554 445677999999864332111111


Q ss_pred             C-CeEEEEEecCCCce
Q psy8891          77 H-GKITSLDLSKGTET   91 (203)
Q Consensus        77 ~-~~v~~~~~~~~~~~   91 (203)
                      . .....+++.++...
T Consensus       120 ~~~~P~~i~vd~~~g~  135 (267)
T 1npe_A          120 GLVNPRGIVTDPVRGN  135 (267)
T ss_dssp             SCSSEEEEEEETTTTE
T ss_pred             CCCCccEEEEeeCCCE
Confidence            1 23456666664433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.57  E-value=0.0054  Score=51.67  Aligned_cols=175  Identities=13%  Similarity=0.062  Sum_probs=97.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeE--EecCc------CceEEEEeCCCCEEEEecC------CCeEEEEECCCceEEEe
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETK--FAGSS------CNDLVTYDGAGTTIISGHF------DKKVRFWDFRAEEKVRD   73 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~------~~~~~~~~~~~~~l~s~~~------D~~i~vwd~~~~~~~~~   73 (203)
                      ++.+++.++.|+.|..+|..+++..  .....      ......+. + ..|+.+..      ++.|..+|.++++.+..
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            3567888899999999999987753  11110      00000111 2 35555432      68999999999998876


Q ss_pred             eeeCC--eEEE-----EE-ecC--CCceE---EEecCCceEEEEcCCCCEEEEeeCCC-------------------eEE
Q psy8891          74 IELHG--KITS-----LD-LSK--GTETK---FAGSSCNDLVTYDGAGTTIISGHFDK-------------------KVR  121 (203)
Q Consensus        74 ~~~~~--~v~~-----~~-~~~--~~~~~---~~~~~~~~~~~~~~~~~~l~s~s~d~-------------------~i~  121 (203)
                      +....  +...     +. -.+  .+..+   ..+........++++...++.++.++                   .|.
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            64310  0000     00 000  00000   01111112356777777888887665                   489


Q ss_pred             EEECCCCceEEEEeccce-EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCC---EEEEecCCCcEEEEeCCCceeee
Q psy8891         122 FWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDD---YVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       122 iWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                      .+|.++|+.+..++.... ........ ...              ...+..+++   .++.++.+|.++++|..+|+++.
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~-~~~--------------~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQ-QIT--------------LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCS-CEE--------------EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             EEcCCCCceeeEeecCCCccccccCCC-CcE--------------EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence            999999998877764311 00000000 000              001112443   68899999999999999999985


Q ss_pred             ee
Q psy8891         198 VL  199 (203)
Q Consensus       198 ~~  199 (203)
                      .+
T Consensus       339 ~~  340 (668)
T 1kv9_A          339 AE  340 (668)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.57  E-value=0.0078  Score=49.68  Aligned_cols=116  Identities=13%  Similarity=0.122  Sum_probs=64.5

Q ss_pred             eEEcCCCCEEEEEeCCC--------------------------------------cEEEEeCCC--CCe---EEecCcCc
Q psy8891           3 AKFLGDPTKVVSGSCDR--------------------------------------TLKIWDLRS--TET---KFAGSSCN   39 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~--------------------------------------~v~lwdl~~--~~~---~~~~~~~~   39 (203)
                      ++++|||+++++.+.+.                                      .|.+.|..+  .+.   ........
T Consensus       200 ~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P  279 (595)
T 1fwx_A          200 CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP  279 (595)
T ss_dssp             EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC
T ss_pred             eEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc
Confidence            57889999998888664                                      366666665  221   11111111


Q ss_pred             eEEEEeCCCCEEEEe-cCCCeEEEEECCCceEE--EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC
Q psy8891          40 DLVTYDGAGTTIISG-HFDKKVRFWDFRAEEKV--RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF  116 (203)
Q Consensus        40 ~~~~~~~~~~~l~s~-~~D~~i~vwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  116 (203)
                      ..+.++|||++++.+ ..+.+|.++|+.+.+..  ..+.....+.. ....        ..-.....|+++|...++.--
T Consensus       280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-~v~v--------G~gP~h~aF~~dG~aY~t~~l  350 (595)
T 1fwx_A          280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EPEL--------GLGPLHTAFDGRGNAYTSLFL  350 (595)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-CCBC--------CSCEEEEEECTTSEEEEEETT
T ss_pred             eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-EcCC--------CCCcceEEECCCCeEEEEEec
Confidence            236788999965554 57889999999865310  00111111100 0000        000123457778833344556


Q ss_pred             CCeEEEEECCC
Q psy8891         117 DKKVRFWDFRA  127 (203)
Q Consensus       117 d~~i~iWd~~~  127 (203)
                      |++|..||+.+
T Consensus       351 dsqV~kwdi~~  361 (595)
T 1fwx_A          351 DSQVVKWNIED  361 (595)
T ss_dssp             TTEEEEEEHHH
T ss_pred             CCcEEEEEhhH
Confidence            89999999876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.49  E-value=0.019  Score=43.65  Aligned_cols=120  Identities=12%  Similarity=0.033  Sum_probs=64.8

Q ss_pred             ceEEcCCCCEEEEEeCC----CcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEE-EEecCCCeEEEEECC--Cc-eEE
Q psy8891           2 CAKFLGDPTKVVSGSCD----RTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFR--AE-EKV   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D----~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~--~~-~~~   71 (203)
                      .++++|+|+..++...+    ....||.+..++..  .........++++++++.| ++...++.|.+||+.  ++ +..
T Consensus       138 ~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~  217 (326)
T 2ghs_A          138 DGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG  217 (326)
T ss_dssp             EEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred             CEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc
Confidence            46788999876665422    23344443333321  1111122346788999866 444567899999986  44 211


Q ss_pred             --EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891          72 --RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        72 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                        ..+.        .+... ...      ..-++++++|.+.++...++.|.+||. +++.+..+..+
T Consensus       218 ~~~~~~--------~~~~~-~~~------p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~  269 (326)
T 2ghs_A          218 KAEVFI--------DSTGI-KGG------MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP  269 (326)
T ss_dssp             CCEEEE--------ECTTS-SSE------EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred             CceEEE--------ECCCC-CCC------CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence              0110        01000 000      012456777876666656689999998 56665555443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.35  E-value=0.0025  Score=52.69  Aligned_cols=63  Identities=10%  Similarity=0.059  Sum_probs=41.8

Q ss_pred             CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891          57 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        57 D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      ++.+..||+.+++.+........+..       ..            ....+..++.++.|+.|+.+|.++++.+.++..
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~-------~~------------~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWG-------GT------------LYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCS-------BC------------EEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccc-------ee------------EEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            46788888887776655543221110       00            011345677789999999999999999888876


Q ss_pred             cc
Q psy8891         137 HG  138 (203)
Q Consensus       137 ~~  138 (203)
                      ..
T Consensus       504 ~~  505 (571)
T 2ad6_A          504 PS  505 (571)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.28  E-value=0.0025  Score=52.83  Aligned_cols=64  Identities=14%  Similarity=0.125  Sum_probs=42.8

Q ss_pred             CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891          57 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        57 D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      ++.|..||+.+++.+.......++.       ...+            ...+..++.++.|+.++.+|.++|+.+.+++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~-------~g~~------------~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLW-------AGVL------------ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCC-------SCCE------------EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCCCCCc-------ccce------------EeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            5778888888877665544321110       0000            11345788899999999999999999988877


Q ss_pred             cce
Q psy8891         137 HGK  139 (203)
Q Consensus       137 ~~~  139 (203)
                      ...
T Consensus       526 ~~g  528 (582)
T 1flg_A          526 GSG  528 (582)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.23  E-value=0.043  Score=45.98  Aligned_cols=67  Identities=13%  Similarity=0.138  Sum_probs=45.1

Q ss_pred             eEEcCCCCEEEEEeC-CCcEEEEeCCCCCeEEec----CcCceEEEEeCCCCEEEEec-CC-----CeEEEEECCCce
Q psy8891           3 AKFLGDPTKVVSGSC-DRTLKIWDLRSTETKFAG----SSCNDLVTYDGAGTTIISGH-FD-----KKVRFWDFRAEE   69 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~-D~~v~lwdl~~~~~~~~~----~~~~~~~~~~~~~~~l~s~~-~D-----~~i~vwd~~~~~   69 (203)
                      +++..+++.++.|+. +..+.+||..+.+-....    ......+...++++.++.|| .+     ..+.+||..+.+
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            466789999999984 568999998765422111    11112234446888999998 45     579999987765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.14  E-value=0.054  Score=41.49  Aligned_cols=74  Identities=3%  Similarity=0.028  Sum_probs=47.4

Q ss_pred             ceEEcCCCCEEEEEe-CCCcEEEEeCCCCCe-EEecCc---------CceEEEE---eCCCCEEEEec------------
Q psy8891           2 CAKFLGDPTKVVSGS-CDRTLKIWDLRSTET-KFAGSS---------CNDLVTY---DGAGTTIISGH------------   55 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s-~D~~v~lwdl~~~~~-~~~~~~---------~~~~~~~---~~~~~~l~s~~------------   55 (203)
                      +.+|.+...+++.++ ..++|..||...+.. ......         ...-+.+   ++++.+++...            
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~   96 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS   96 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence            578888777777777 799999999975432 111110         1133567   57766666433            


Q ss_pred             -CCCeEEEEECC---CceEEEeee
Q psy8891          56 -FDKKVRFWDFR---AEEKVRDIE   75 (203)
Q Consensus        56 -~D~~i~vwd~~---~~~~~~~~~   75 (203)
                       -+..+..||+.   +++.+....
T Consensus        97 ~g~~~v~~~Dl~~~~tg~~~~~~d  120 (334)
T 2p9w_A           97 HGASSFHSFNLPLSENSKPVWSVN  120 (334)
T ss_dssp             SSCCEEEEEESSCCTTCCCSEEEE
T ss_pred             CCCCEEEEEcCCcCCCCCEEEEec
Confidence             26789999998   776655443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.89  E-value=0.076  Score=39.70  Aligned_cols=28  Identities=14%  Similarity=0.090  Sum_probs=15.4

Q ss_pred             cCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891         105 DGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus       105 ~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                      +++| .|..++.++.|..+|. +++.+..+
T Consensus       223 ~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~  250 (330)
T 3hxj_A          223 SEDG-TIYVTSLDGHLYAINP-DGTEKWRF  250 (330)
T ss_dssp             CTTS-CEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             CCCC-eEEEEcCCCeEEEECC-CCCEeEEe
Confidence            3444 3555666777777763 44444443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.87  E-value=0.089  Score=39.63  Aligned_cols=68  Identities=7%  Similarity=-0.018  Sum_probs=43.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE-EecC---------------------cCceEEEEeCCCCEEEEecCCCe
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-FAGS---------------------SCNDLVTYDGAGTTIISGHFDKK   59 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~-~~~~---------------------~~~~~~~~~~~~~~l~s~~~D~~   59 (203)
                      ++++.+++..++++..++.|..||..+.+.. +...                     .....+++.+++..|+.+...+.
T Consensus        23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~  102 (322)
T 2fp8_A           23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYH  102 (322)
T ss_dssp             CEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTE
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCC
Confidence            4677889888899999999999998765432 1100                     01123556763345555555566


Q ss_pred             EEEEECCCce
Q psy8891          60 VRFWDFRAEE   69 (203)
Q Consensus        60 i~vwd~~~~~   69 (203)
                      |..+|...+.
T Consensus       103 i~~~d~~~g~  112 (322)
T 2fp8_A          103 LSVVGSEGGH  112 (322)
T ss_dssp             EEEECTTCEE
T ss_pred             EEEEeCCCCE
Confidence            8888876543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.76  E-value=0.19  Score=41.82  Aligned_cols=113  Identities=15%  Similarity=0.096  Sum_probs=64.9

Q ss_pred             CCEEEEEeC-CCcEEEEeC-CCCCeE--EecCc------------CceEEEEeCCCCE----EEEecCCCeEEEEECCCc
Q psy8891           9 PTKVVSGSC-DRTLKIWDL-RSTETK--FAGSS------------CNDLVTYDGAGTT----IISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         9 ~~~l~t~s~-D~~v~lwdl-~~~~~~--~~~~~------------~~~~~~~~~~~~~----l~s~~~D~~i~vwd~~~~   68 (203)
                      +..++.++. ++.|.-+|. .+++.+  +....            ...-+.+.|.+..    |+.++.|+.+..+|.+++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456777777 899999999 787653  11100            0111334333334    888889999999999999


Q ss_pred             eEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee------CCCeEEEEECCCCceEEEEec
Q psy8891          69 EKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH------FDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s------~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      +.+........      .. ...    .....++ .  ++ .|+.++      .++.|+.+|.++|+.+..+..
T Consensus       142 ~~~W~~~~~~~------~~-~~~----~~ssP~v-~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          142 ETVWKVENSDI------KV-GST----LTIAPYV-V--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             CEEEEEECCCG------GG-TCB----CCSCCEE-E--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CEEEeecCCCC------Cc-cce----eecCCEE-E--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            98766543210      00 000    0000001 0  22 344443      378889999888888766654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.73  E-value=0.013  Score=50.00  Aligned_cols=68  Identities=15%  Similarity=0.018  Sum_probs=43.0

Q ss_pred             ceEEc-CCCCEEEE-EeCC----CcEEEEeCCCC-CeEEec-CcCceEEEEeCCCCEEEEecCC-----CeEEEEECCCc
Q psy8891           2 CAKFL-GDPTKVVS-GSCD----RTLKIWDLRST-ETKFAG-SSCNDLVTYDGAGTTIISGHFD-----KKVRFWDFRAE   68 (203)
Q Consensus         2 ~~~~~-~~~~~l~t-~s~D----~~v~lwdl~~~-~~~~~~-~~~~~~~~~~~~~~~l~s~~~D-----~~i~vwd~~~~   68 (203)
                      ..+|| |||++|+- .+.+    .+|+++|+.++ +..... ......+.|+||++.|+....|     ..|.++++.++
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~  257 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL  257 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence            35789 99998764 3333    35999999887 521100 0011235789999877776665     36777888765


Q ss_pred             e
Q psy8891          69 E   69 (203)
Q Consensus        69 ~   69 (203)
                      +
T Consensus       258 ~  258 (751)
T 2xe4_A          258 Q  258 (751)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.37  E-value=0.24  Score=38.27  Aligned_cols=127  Identities=9%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceE-E--EEeCCCC---E-EEEecC--CCeEEEEECCC-ceEEEeeee
Q psy8891           8 DPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDL-V--TYDGAGT---T-IISGHF--DKKVRFWDFRA-EEKVRDIEL   76 (203)
Q Consensus         8 ~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~-~--~~~~~~~---~-l~s~~~--D~~i~vwd~~~-~~~~~~~~~   76 (203)
                      ...+++.....+-+.+||+........ ....+.+ +  .+.-.++   + ++|.-.  +++|.+|++.. ...+..+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            345577777788999999954333222 1222221 1  1111222   2 333334  58999997742 222333311


Q ss_pred             C-CeEEEEE-ecCCCceEEEecCCceEEEE-cCC-CC-EEEEeeCCCeEEEEECC-------CCceEEEEeccceEEEEE
Q psy8891          77 H-GKITSLD-LSKGTETKFAGSSCNDLVTY-DGA-GT-TIISGHFDKKVRFWDFR-------AEEKVRDIELHGKITSLD  144 (203)
Q Consensus        77 ~-~~v~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~-~l~s~s~d~~i~iWd~~-------~~~~~~~~~~~~~v~~~~  144 (203)
                      - .++ .-. ..+.+           +..| ++. +. +++....++.+..|++.       +++.++++.+.+++..+.
T Consensus       119 ~~~pv-~t~~~~pyG-----------lcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egcv  186 (355)
T 3amr_A          119 PDHPI-ATAINEVYG-----------FTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMA  186 (355)
T ss_dssp             TTSCE-ECCCSSCCC-----------EEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEE
T ss_pred             cccCc-CCCCCCeeE-----------EEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEE
Confidence            0 011 000 11111           1122 343 33 57777888999999883       234456676666665544


Q ss_pred             ec
Q psy8891         145 LS  146 (203)
Q Consensus       145 ~~  146 (203)
                      +.
T Consensus       187 vD  188 (355)
T 3amr_A          187 AD  188 (355)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.93  E-value=0.31  Score=40.79  Aligned_cols=111  Identities=13%  Similarity=0.163  Sum_probs=64.5

Q ss_pred             ceEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCCeE----EecCc--CceEEEEeCCCCEEEEecC-CCeEEE
Q psy8891           2 CAKFLG-DPTKVVSGSCDR-----------TLKIWDLRSTETK----FAGSS--CNDLVTYDGAGTTIISGHF-DKKVRF   62 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~-----------~v~lwdl~~~~~~----~~~~~--~~~~~~~~~~~~~l~s~~~-D~~i~v   62 (203)
                      .+++.+ +++.++.|+.+.           .+.+||+.+.+-.    .....  ....+++..++..++.||. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            356677 888888888654           5889999875421    11111  1112445578889999985 458999


Q ss_pred             EECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CC-----CeEEEEECCCCc
Q psy8891          63 WDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FD-----KKVRFWDFRAEE  129 (203)
Q Consensus        63 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d-----~~i~iWd~~~~~  129 (203)
                      ||..+.+-...-....        +         ......+.-++|++++.|+ .+     ..+.+||..+++
T Consensus       270 yd~~t~~W~~~~~~~~--------~---------R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQV--------A---------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSS--------C---------CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCc--------c---------ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            9987664321110000        0         0001122234667777777 34     578889987653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=95.75  E-value=0.43  Score=35.82  Aligned_cols=106  Identities=8%  Similarity=0.063  Sum_probs=55.1

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCe-EEec----C--cCceEEEEeC-CCCEEEEecC-----------------C
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTET-KFAG----S--SCNDLVTYDG-AGTTIISGHF-----------------D   57 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-~~~~----~--~~~~~~~~~~-~~~~l~s~~~-----------------D   57 (203)
                      +++.+++..|+.+...+.|..+|..++.. ....    .  ....-+.+++ +++..++-..                 +
T Consensus        85 i~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~  164 (322)
T 2fp8_A           85 ISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT  164 (322)
T ss_dssp             EEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred             EEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence            56676334555555556688888765321 1111    0  1112355677 7765554322                 2


Q ss_pred             CeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEe-eCCCeEEEEECCC
Q psy8891          58 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISG-HFDKKVRFWDFRA  127 (203)
Q Consensus        58 ~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~~i~iWd~~~  127 (203)
                      +.|..||...++......                   ......-++++++|+.|+.+ ..++.|..+|+..
T Consensus       165 g~v~~~d~~~~~~~~~~~-------------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLK-------------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEEEEETTTTEEEEEEE-------------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             ceEEEEeCCCCEEEEecc-------------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            556666655443221110                   00111125677888766555 4568999999874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.72  E-value=0.29  Score=41.76  Aligned_cols=69  Identities=10%  Similarity=0.041  Sum_probs=42.1

Q ss_pred             EEEEe-CCCCEEEEe-cC----CCeEEEEECCCc-eEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEE
Q psy8891          41 LVTYD-GAGTTIISG-HF----DKKVRFWDFRAE-EKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS  113 (203)
Q Consensus        41 ~~~~~-~~~~~l~s~-~~----D~~i~vwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  113 (203)
                      ...++ ||++.|+-+ +.    ..+|+++|+.++ +.+.     ..+... .              .-..|+|||+.|+.
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----~~~~~~-~--------------~~~~WspDg~~l~y  237 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-----DKVSGT-N--------------GEIVWGPDHTSLFY  237 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-----CCEEEE-C--------------SCCEECSSTTEEEE
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-----ccccCc-e--------------eeEEEecCCCEEEE
Confidence            35789 999977643 22    236999999887 5321     111111 0              01458888887777


Q ss_pred             eeCC-----CeEEEEECCCCc
Q psy8891         114 GHFD-----KKVRFWDFRAEE  129 (203)
Q Consensus       114 ~s~d-----~~i~iWd~~~~~  129 (203)
                      ...|     ..|.++++.+++
T Consensus       238 ~~~d~~~~~~~v~~~~lgt~~  258 (751)
T 2xe4_A          238 VTKDETLRENKVWRHVMGKLQ  258 (751)
T ss_dssp             EEECTTCCEEEEEEEETTSCG
T ss_pred             EEECCCCCCCEEEEEECCCCc
Confidence            7665     257777776543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.70  E-value=0.39  Score=34.94  Aligned_cols=114  Identities=8%  Similarity=-0.011  Sum_probs=64.2

Q ss_pred             ceEEcCCCCEEEEEeC---CCcEEEEeCCCCCe-EEe-c-CcCceEEEEeCCCCEEE-EecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPTKVVSGSC---DRTLKIWDLRSTET-KFA-G-SSCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~---D~~v~lwdl~~~~~-~~~-~-~~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      .++++|++..|+-+..   .+.|..+++..... ... . .....-++++++++.|+ +-...+.|.++|+........+
T Consensus       126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~  205 (267)
T 1npe_A          126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL  205 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE
T ss_pred             EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe
Confidence            3578887776665554   36788888865332 121 1 11223467888766654 4455679999998754322211


Q ss_pred             eeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEec
Q psy8891          75 ELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      ..-.....+                   +.  ++..|+.+. .++.|..+|..+++.+..+..
T Consensus       206 ~~~~~P~gi-------------------~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          206 EGLQYPFAV-------------------TS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             ECCCSEEEE-------------------EE--ETTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             cCCCCceEE-------------------EE--eCCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence            110111111                   11  223455454 457999999988877766643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.63  E-value=0.62  Score=36.87  Aligned_cols=108  Identities=10%  Similarity=0.067  Sum_probs=58.2

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCC-C----eEEEEECCCceEE--
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFD-K----KVRFWDFRAEEKV--   71 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D-~----~i~vwd~~~~~~~--   71 (203)
                      .++++| ++..|+.+...+.|+.+|+.......  .......-++++++++.|+.+... +    .+.+.+ ..+...  
T Consensus       141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~  219 (430)
T 3tc9_A          141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVI  219 (430)
T ss_dssp             EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSE
T ss_pred             EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeee
Confidence            467787 46667776666889999998754321  212222346788888866655542 2    222233 222211  


Q ss_pred             EeeeeCCeEEEEEecCCCceEEEecCCceEEEEcC-CCCEEEEeeCCCeEEEEECCCCc
Q psy8891          72 RDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                      ..+.        .+           ....-+.++| +|.+.++-..++.|..+|...+.
T Consensus       220 ~~l~--------~~-----------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~  259 (430)
T 3tc9_A          220 TELT--------KG-----------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE  259 (430)
T ss_dssp             EEEE--------EC-----------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred             eeec--------cC-----------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence            1110        01           0111244677 56655555567889999987554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.40  E-value=0.081  Score=40.71  Aligned_cols=121  Identities=13%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             CEEEEecCCCeEEEEECCCceEEEeeeeC--CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEe-eCCCeEEEEEC
Q psy8891          49 TTIISGHFDKKVRFWDFRAEEKVRDIELH--GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISG-HFDKKVRFWDF  125 (203)
Q Consensus        49 ~~l~s~~~D~~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~d~~i~iWd~  125 (203)
                      ..|+.++.||.|.-.|..+++..+.+...  .++.... .+.         .      ..++..++.. +.||.|..+|.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-~~~---------~------~~~~~~~vv~p~~dG~l~a~~~   74 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-EPS---------R------LETYETLIIEPFGDGNIYYFNA   74 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-CSC---------T------TTSSEEEEECCSTTTEEEEEET
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-CCc---------c------ccCCcEEEEEECCCCEEEEEEC
Confidence            47888999999999999999988877543  1111100 000         0      0122223332 57999999998


Q ss_pred             CCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEE----cCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         126 RAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV----VDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       126 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .+|.....+.....+.   .++  ...   .+       ..+...    ..+..+++|+.++.+.-.|+.+|+.+.++.
T Consensus        75 ~~G~~~~~~~~~~lv~---~SP--~~~---~~-------~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           75 HQGLQKLPLSIRQLVS---TSP--LHL---KT-------NIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TTEEEEEEEEHHHHHT---TCS--EEE---EC-------C----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             CCCcEEeeecccccee---ccc--ccc---CC-------CceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            8775443333321110   000  000   00       000000    145678899999999999999999988775

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.38  E-value=0.47  Score=35.27  Aligned_cols=60  Identities=17%  Similarity=0.186  Sum_probs=32.3

Q ss_pred             EEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         110 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       110 ~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      .|+.++.++.|..+|. +++....+......                       +......++ ..|..|+.+|.+++..
T Consensus       267 ~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~-----------------------~~~~~~d~~-g~l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          267 TIYFGSYDGHLYAINP-DGTEKWNFETGSWI-----------------------IATPVIDEN-GTIYFGTRNGKFYALF  321 (330)
T ss_dssp             CEEEECTTCEEEEECT-TSCEEEEEECSSCC-----------------------CSCCEECTT-CCEEEECTTSCEEEEE
T ss_pred             eEEEecCCCCEEEECC-CCcEEEEEEcCCcc-----------------------ccceEEcCC-CEEEEEcCCCeEEEEe
Confidence            4666677778888885 55554444322110                       001112233 4566789999999988


Q ss_pred             CCCce
Q psy8891         190 CNTEQ  194 (203)
Q Consensus       190 ~~~~~  194 (203)
                      ....+
T Consensus       322 ~~~~~  326 (330)
T 3hxj_A          322 NLEHH  326 (330)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            76543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.67  E-value=1.1  Score=34.39  Aligned_cols=118  Identities=10%  Similarity=0.138  Sum_probs=66.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEe-C----CCCEEEEe-cCCCeEEEEECCCceEEEeeeeCCeEE
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYD-G----AGTTIISG-HFDKKVRFWDFRAEEKVRDIELHGKIT   81 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~-~----~~~~l~s~-~~D~~i~vwd~~~~~~~~~~~~~~~v~   81 (203)
                      ..++.++.||.|.-.|..+++.+  +........+... +    ++..++-. ..||.+..+|..++.....+.....+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46788999999999999887643  2221001112111 1    22333333 689999999988875544333211110


Q ss_pred             EEEecCCCceEEEecCCceEEEEcC----CCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891          82 SLDLSKGTETKFAGSSCNDLVTYDG----AGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                         .+|   ....+.    .+..++    .+..++++++++++...|+++|+.+.++...
T Consensus        91 ---~SP---~~~~~~----pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 ---TSP---LHLKTN----IVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             ---TCS---EEEECC--------------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ---ccc---cccCCC----ceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence               000   000000    000000    2347899999999999999999999888654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.45  E-value=1.5  Score=35.07  Aligned_cols=99  Identities=14%  Similarity=0.221  Sum_probs=59.9

Q ss_pred             CCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEec
Q psy8891          17 CDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGS   96 (203)
Q Consensus        17 ~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (203)
                      .+.+|-+-|+..+.......-..+..-..|..+.++--. ..++.|+|+++.+.++.......|.-+.|-.+        
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~--------  116 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--------  116 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET--------
T ss_pred             CCCeEEEEECCCCCcceecccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC--------
Confidence            344788888876443221111122234566666555444 78999999999998888776665544433221        


Q ss_pred             CCceEEEEcCCCCEEEEeeCCCeEEEEECCC-CceEEEEecc
Q psy8891          97 SCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELH  137 (203)
Q Consensus        97 ~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~~~~~~~~~  137 (203)
                                  +.|+-.+ +..|.-|++.. ..+.+.+.-+
T Consensus       117 ------------~~l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A          117 ------------NTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             ------------TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             ------------CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence                        2454444 56899999863 3566666654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=93.78  E-value=1.8  Score=33.41  Aligned_cols=90  Identities=11%  Similarity=0.211  Sum_probs=50.9

Q ss_pred             CCcEEEEeCC--CCCeEEec----------CcCceEEEE-eCC-CC-EEEEecCCCeEEEEECCC-------ceEEEeee
Q psy8891          18 DRTLKIWDLR--STETKFAG----------SSCNDLVTY-DGA-GT-TIISGHFDKKVRFWDFRA-------EEKVRDIE   75 (203)
Q Consensus        18 D~~v~lwdl~--~~~~~~~~----------~~~~~~~~~-~~~-~~-~l~s~~~D~~i~vwd~~~-------~~~~~~~~   75 (203)
                      +++|++|++.  +.+.....          .....++.+ ++. +. +++....++.+..|++..       .+.++++.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            5889999773  33322111          111222332 453 33 688888899999999832       23344444


Q ss_pred             eCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          76 LHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                      ..+++..                   +..++....|+.+-.|.-|..+|.+
T Consensus       178 lgsq~Eg-------------------cvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          178 MNSQTEG-------------------MAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             CSSCEEE-------------------EEEETTTTEEEEEETTTEEEEEECS
T ss_pred             CCCCcce-------------------EEEcCCCCeEEEecccceEEEEeCC
Confidence            4433332                   2345556688888888665555643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.58  E-value=2.3  Score=35.95  Aligned_cols=68  Identities=9%  Similarity=-0.027  Sum_probs=37.7

Q ss_pred             ceEEcCCCCEEEEE-eCCCcEEEEeCCC----CCe--EEe-cCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCce
Q psy8891           2 CAKFLGDPTKVVSG-SCDRTLKIWDLRS----TET--KFA-GSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         2 ~~~~~~~~~~l~t~-s~D~~v~lwdl~~----~~~--~~~-~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~   69 (203)
                      .++|.+++..|+-+ ...+.|+.+++.+    ...  ... .......+++++.+. +.++-...+.|.+.++....
T Consensus       410 gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            46778766666554 4567899998874    111  111 111112245554333 44454567789999886543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=93.13  E-value=2  Score=31.92  Aligned_cols=69  Identities=9%  Similarity=-0.073  Sum_probs=42.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-ecCcCceEEEEeCCCCEEEEecCC-C-eEEEEECCCceE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-AGSSCNDLVTYDGAGTTIISGHFD-K-KVRFWDFRAEEK   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~D-~-~i~vwd~~~~~~   70 (203)
                      .+++.+++..+++-..++.|..||........ ........+++.++++.+++.... + .|..+|..+++.
T Consensus        36 gia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           36 NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             eEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            46788999877777688999999987643221 112222335678888865554332 2 466667666654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=91.50  E-value=4.3  Score=32.08  Aligned_cols=130  Identities=11%  Similarity=0.064  Sum_probs=69.8

Q ss_pred             EEEEeCC--CCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCC----ceE-------------
Q psy8891          41 LVTYDGA--GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSC----NDL-------------  101 (203)
Q Consensus        41 ~~~~~~~--~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~-------------  101 (203)
                      .++++++  +..|+.+...+.|+.+|+..+........-.....+++.+++...++....    ..+             
T Consensus       143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~  222 (433)
T 4hw6_A          143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERL  222 (433)
T ss_dssp             EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEE
T ss_pred             eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccc
Confidence            3567773  456666555589999998777655443333456778888877632222110    001             


Q ss_pred             ----------EEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEE
Q psy8891         102 ----------VTYDG-AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV  170 (203)
Q Consensus       102 ----------~~~~~-~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (203)
                                +++++ +|.+.++-..++.|+.+|..++.....+....        ..        .     ....++++
T Consensus       223 ~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~--------~~--------~-----~~~~ia~d  281 (433)
T 4hw6_A          223 SLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD--------TK--------G-----SNFHIVWH  281 (433)
T ss_dssp             EEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS--------CC--------S-----SCEEEEEC
T ss_pred             cccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC--------CC--------C-----CcccEEEe
Confidence                      23455 44444444455667777766554322111000        00        0     00135677


Q ss_pred             cCCC-EEEEecCCCcEEEEeCC
Q psy8891         171 VDDD-YVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       171 ~~~~-~l~s~s~d~~v~~wd~~  191 (203)
                      |+++ ++++-...+.|+.++.+
T Consensus       282 pdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          282 PTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             TTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCCEEEEEeCCCCEEEEEeCC
Confidence            8887 45555667888887765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=91.11  E-value=4.9  Score=32.01  Aligned_cols=103  Identities=11%  Similarity=0.100  Sum_probs=61.9

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCC-eE-EecC---c--CceEEEEeCCCCEEEEecCCCeEEEEECCCceE---------
Q psy8891           7 GDPTKVVSGSCDRTLKIWDLRSTE-TK-FAGS---S--CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK---------   70 (203)
Q Consensus         7 ~~~~~l~t~s~D~~v~lwdl~~~~-~~-~~~~---~--~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~---------   70 (203)
                      .+|..++.+- ++.||.-++.... .+ ....   .  ....+..+|+|++|+-.+ +..|.|-.+..+..         
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence            4666676664 5888888886322 11 1111   1  123366789998888764 45788888763221         


Q ss_pred             ---EEeeee-------CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCC
Q psy8891          71 ---VRDIEL-------HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA  127 (203)
Q Consensus        71 ---~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~  127 (203)
                         .+++..       ..+|..+-|+|-+.                .+..|++-..|++||+||+..
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~----------------~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSY----------------RDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBG----------------GGCEEEEEETTSCEEEEETTC
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccC----------------CCCeEEEEecCCEEEEEEccc
Confidence               111111       23355555555322                356889999999999999985

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=89.33  E-value=7.1  Score=31.10  Aligned_cols=64  Identities=9%  Similarity=0.037  Sum_probs=43.0

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCe-------------E-Eec-------CcCceEEEEeC---CCCEEEEecCCC
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTET-------------K-FAG-------SSCNDLVTYDG---AGTTIISGHFDK   58 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-------------~-~~~-------~~~~~~~~~~~---~~~~l~s~~~D~   58 (203)
                      +-.+|+|+.||-.+ +.+|.+-.+..+..             . +..       .....-+.|.|   .+..|+.--.|+
T Consensus        71 lvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~  149 (452)
T 3pbp_A           71 VISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD  149 (452)
T ss_dssp             EEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS
T ss_pred             EEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC
Confidence            34689999888775 57999999873210             0 111       11123345666   456899999999


Q ss_pred             eEEEEECCC
Q psy8891          59 KVRFWDFRA   67 (203)
Q Consensus        59 ~i~vwd~~~   67 (203)
                      +||+||+..
T Consensus       150 ~Ir~yDl~~  158 (452)
T 3pbp_A          150 TITMFDILN  158 (452)
T ss_dssp             CEEEEETTC
T ss_pred             EEEEEEccc
Confidence            999999975

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.11  E-value=2.6  Score=37.12  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891         102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus       102 ~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      ....++..++++.+.|+++|+|++.+++++.+..+
T Consensus       241 ~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          241 MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             EEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             EeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            34556778999999999999999999998877654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=89.08  E-value=5.2  Score=29.25  Aligned_cols=66  Identities=9%  Similarity=0.021  Sum_probs=43.7

Q ss_pred             eEEcCCCCEEEE-EeCCCcEEEEeCCCCCeEE----ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCce
Q psy8891           3 AKFLGDPTKVVS-GSCDRTLKIWDLRSTETKF----AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         3 ~~~~~~~~~l~t-~s~D~~v~lwdl~~~~~~~----~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~   69 (203)
                      ++|.|++..|++ ...++.|...|+. ++...    .+.....-+++.+++.++++.-.++.+.++++....
T Consensus        32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            577888777665 6667888888887 44321    111223446677777777776677889999886544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=88.39  E-value=6.6  Score=29.54  Aligned_cols=67  Identities=13%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             ceEEcCCCCE-EEEEeCCCcEEEEeCCCCC---eEE-ecCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCc
Q psy8891           2 CAKFLGDPTK-VVSGSCDRTLKIWDLRSTE---TKF-AGSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         2 ~~~~~~~~~~-l~t~s~D~~v~lwdl~~~~---~~~-~~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~   68 (203)
                      ++.|.+.+.. .++-...+.|..+++....   ... .......-+++++.+. +.++-...+.|.++++...
T Consensus        39 ~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           39 AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            4567765444 4455567788888887642   121 1111223356676444 4455556778999998654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.61  E-value=2  Score=38.59  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=28.7

Q ss_pred             EEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891         103 TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus       103 ~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      ...++..++++.+.|+++|+||+.+++++.+..+
T Consensus       244 ~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          244 IFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             EEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence            3456678999999999999999999999887654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=87.36  E-value=8.6  Score=29.71  Aligned_cols=67  Identities=9%  Similarity=0.024  Sum_probs=38.6

Q ss_pred             ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCc
Q psy8891           2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~   68 (203)
                      .++|.+.+..| ++-...+.|..+++.......  . ......-+++++.+..| ++-...+.|.+.++...
T Consensus       120 gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~  191 (386)
T 3v65_B          120 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  191 (386)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence            36677655554 455567888888887654321  1 11111235667654444 55555678888887644

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=86.69  E-value=11  Score=30.44  Aligned_cols=56  Identities=7%  Similarity=0.022  Sum_probs=32.8

Q ss_pred             eEEcC-CCCEEEEEeC-CCcEEEEeCCCCCeEE--ecCc----CceEEEE-------eCCCCEEEEecCCC
Q psy8891           3 AKFLG-DPTKVVSGSC-DRTLKIWDLRSTETKF--AGSS----CNDLVTY-------DGAGTTIISGHFDK   58 (203)
Q Consensus         3 ~~~~~-~~~~l~t~s~-D~~v~lwdl~~~~~~~--~~~~----~~~~~~~-------~~~~~~l~s~~~D~   58 (203)
                      ++|.| +...|+.+.. .+.|++.|+.......  ....    ....+++       +++++.|+.+.+.+
T Consensus       144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence            56787 3555555544 4678888988755432  1111    1234667       88888666665554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=86.53  E-value=10  Score=29.80  Aligned_cols=89  Identities=11%  Similarity=0.100  Sum_probs=46.3

Q ss_pred             ceEEcCCCCEEEEEeC-CC----cEEEEeCCCCC----eEEecCcCceEEEEeC-CCCEEEEecCCCeEEEEECCCceEE
Q psy8891           2 CAKFLGDPTKVVSGSC-DR----TLKIWDLRSTE----TKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-D~----~v~lwdl~~~~----~~~~~~~~~~~~~~~~-~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      .++|+++++.|+.+.. ++    .+...+.....    .......+ ..++++| ++.+.++-..++.|..+|...+...
T Consensus       183 ~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p-~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~  261 (430)
T 3tc9_A          183 TICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNC-NGAETHPINGELYFNSWNAGQVFRYDFTTQETT  261 (430)
T ss_dssp             EEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSC-CCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCc-eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            4678899996665554 22    23333332211    11111222 2356778 5666666667789999998766542


Q ss_pred             Eeeee--CCeEEEEEecCCCce
Q psy8891          72 RDIEL--HGKITSLDLSKGTET   91 (203)
Q Consensus        72 ~~~~~--~~~v~~~~~~~~~~~   91 (203)
                      .....  ......+++++++..
T Consensus       262 ~~~~~~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          262 PLFTIQDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             EEEECSSSSCCEEEEECTTSSE
T ss_pred             EEEEcCCCCcceeEEEcCCCCE
Confidence            22111  122455666666553

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=86.02  E-value=1.4  Score=38.80  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=28.9

Q ss_pred             EEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         166 RAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       166 ~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                      .....++..++++-+.|+++|+|++.+++++.+.
T Consensus       240 ~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          240 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            3445567789999999999999999999999875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=85.75  E-value=8.8  Score=28.29  Aligned_cols=70  Identities=13%  Similarity=0.117  Sum_probs=40.2

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC--C
Q psy8891          41 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD--K  118 (203)
Q Consensus        41 ~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--~  118 (203)
                      -++++++++.+++-..++.|..||.... ....+...+....+                   .++++|+.+++....  .
T Consensus        36 gia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gi-------------------a~~~dG~l~vad~~~~~~   95 (306)
T 2p4o_A           36 NLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGL-------------------AFTSNGDLVATGWNADSI   95 (306)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEE-------------------EECTTSCEEEEEECTTSC
T ss_pred             eEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeE-------------------EEcCCCcEEEEeccCCcc
Confidence            3677888887777667889999987653 22222222333333                   345566644443322  2


Q ss_pred             eEEEEECCCCce
Q psy8891         119 KVRFWDFRAEEK  130 (203)
Q Consensus       119 ~i~iWd~~~~~~  130 (203)
                      .|..+|..+++.
T Consensus        96 ~v~~~d~~~g~~  107 (306)
T 2p4o_A           96 PVVSLVKSDGTV  107 (306)
T ss_dssp             EEEEEECTTSCE
T ss_pred             eEEEEcCCCCeE
Confidence            466667666654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=85.37  E-value=4.1  Score=37.66  Aligned_cols=97  Identities=13%  Similarity=0.213  Sum_probs=55.9

Q ss_pred             CCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEec
Q psy8891          17 CDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGS   96 (203)
Q Consensus        17 ~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (203)
                      ...+|-+-|+..+......+-..+..-..|..+.++--. ..++.|+|+.+.+.++.......|.-+.|-..        
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~--------  116 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--------  116 (1630)
T ss_pred             CCceEEEEECCCCCCcccccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCC--------
Confidence            344677888876443221111112223456555555443 78999999999888777766666655544322        


Q ss_pred             CCceEEEEcCCCCEEEEeeCCCeEEEEECCC-CceEEEEe
Q psy8891          97 SCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIE  135 (203)
Q Consensus        97 ~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~~~~~~~  135 (203)
                                  +.|+-++ +..|.-|++.. ..|.+.+.
T Consensus       117 ------------~~l~lVT-~~aVyHW~~~~~s~P~k~fd  143 (1630)
T 1xi4_A          117 ------------NTVALVT-DNAVYHWSMEGESQPVKMFD  143 (1630)
T ss_pred             ------------CeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence                        2344443 46899999963 23444443

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=85.23  E-value=1.4  Score=37.45  Aligned_cols=30  Identities=13%  Similarity=0.321  Sum_probs=26.6

Q ss_pred             EcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         170 VVDDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       170 ~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                      ..+..++++-+.|.++|+|++++++++.+.
T Consensus       228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~  257 (729)
T 3f7f_A          228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDY  257 (729)
T ss_dssp             EETTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ccCCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence            346789999999999999999999998875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=83.12  E-value=15  Score=28.89  Aligned_cols=64  Identities=8%  Similarity=-0.007  Sum_probs=40.8

Q ss_pred             eEEcC-CCCEEEEEeCCCcEEEEeCCCCCe---EEecC--cCceEEEEeCCCCEE-EEecCCCeEEEEECC
Q psy8891           3 AKFLG-DPTKVVSGSCDRTLKIWDLRSTET---KFAGS--SCNDLVTYDGAGTTI-ISGHFDKKVRFWDFR   66 (203)
Q Consensus         3 ~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~---~~~~~--~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~   66 (203)
                      +++.| ++...++-..++.|+.+|..++..   .....  ....-++++|+++.| ++-...+.|+.+|+.
T Consensus       233 iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          233 CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            56778 555555655678899999875543   11111  112237889999855 444566899998865

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=82.48  E-value=2.3  Score=36.10  Aligned_cols=34  Identities=12%  Similarity=0.181  Sum_probs=28.5

Q ss_pred             EEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q psy8891         103 TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL  136 (203)
Q Consensus       103 ~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~  136 (203)
                      +...+..++++.+.|+++|+||+.+++++.+..+
T Consensus       226 ~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          226 CKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             EeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            3344567999999999999999999998877665

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.39  E-value=1.6  Score=39.08  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=27.9

Q ss_pred             EEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         168 VFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       168 ~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                      +..++..++++-+.|+++|+|++.+++++.+.
T Consensus       244 ~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          244 IFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             EEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            34467789999999999999999999999875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=81.82  E-value=16  Score=28.32  Aligned_cols=87  Identities=9%  Similarity=-0.030  Sum_probs=45.1

Q ss_pred             ceEEcCCCCEEE-EEeCCCcEEEEeCCCC-----Ce-EEe-cCcCceEEEEeCCCC-EEEEecCCCeEEEEECCCceEEE
Q psy8891           2 CAKFLGDPTKVV-SGSCDRTLKIWDLRST-----ET-KFA-GSSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~-t~s~D~~v~lwdl~~~-----~~-~~~-~~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~~~~   72 (203)
                      .++|.+.+..|+ +-...+.|+.+++...     .. ... .......+++++.+. +.++-...+.|.+.|+.......
T Consensus       116 ~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~  195 (400)
T 3p5b_L          116 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT  195 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE
T ss_pred             EEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE
Confidence            467777665554 4445678888888652     11 111 111223456776444 44455567789888886554332


Q ss_pred             eeee-CCeEEEEEecCC
Q psy8891          73 DIEL-HGKITSLDLSKG   88 (203)
Q Consensus        73 ~~~~-~~~v~~~~~~~~   88 (203)
                      .+.. -.....+++.|.
T Consensus       196 l~~~~~~~P~~iavdp~  212 (400)
T 3p5b_L          196 LFRENGSKPRAIVVDPV  212 (400)
T ss_dssp             EEECSSCCEEEEEEETT
T ss_pred             EEeCCCCCcceEEEecc
Confidence            2221 123455555553

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=80.44  E-value=15  Score=26.86  Aligned_cols=140  Identities=14%  Similarity=0.200  Sum_probs=75.9

Q ss_pred             eEEEEeCCCCEEEE-ecCCCeEEEEECCCceEEEeeeeCC--eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC
Q psy8891          40 DLVTYDGAGTTIIS-GHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF  116 (203)
Q Consensus        40 ~~~~~~~~~~~l~s-~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  116 (203)
                      .-+++.|+++.|++ ...++.|...|+. ++.++.+...+  ..-.++                   +.+++.++++.-.
T Consensus        30 SGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa-------------------~~~~g~~~vs~E~   89 (255)
T 3qqz_A           30 SSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIE-------------------YIGDNQFVISDER   89 (255)
T ss_dssp             EEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEE-------------------ECSTTEEEEEETT
T ss_pred             ceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeE-------------------EeCCCEEEEEECC
Confidence            34678887776655 5678889899987 77666654322  223333                   3344444454445


Q ss_pred             CCeEEEEECCCCce---EEEEecc-------ceEEEEEecCCc-EEEEeec-Ce---------------eE---------
Q psy8891         117 DKKVRFWDFRAEEK---VRDIELH-------GKITSLDLSKGK-YYFVFAE-GF---------------KV---------  160 (203)
Q Consensus       117 d~~i~iWd~~~~~~---~~~~~~~-------~~v~~~~~~~~~-~~~~~~~-~~---------------~~---------  160 (203)
                      ++.+.++++.....   .....+.       .....+++.+.. .+++..+ ..               .+         
T Consensus        90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~  169 (255)
T 3qqz_A           90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ  169 (255)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred             CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc
Confidence            56666666654332   1222211       113566665442 2222211 11               00         


Q ss_pred             --EeeeEEEEEEcCC-CEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         161 --QCDFTRAVFVVDD-DYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       161 --~~~~~~~~~~~~~-~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                        ..++..+.+.|.. .+++.....+.+..+|.. |+++..++
T Consensus       170 ~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~  211 (255)
T 3qqz_A          170 FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMS  211 (255)
T ss_dssp             CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEE
T ss_pred             cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEE
Confidence              1133456677764 456667778889999976 66776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.002

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 3e-12
 Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 27/201 (13%)

Query: 8   DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGA----------------GTTI 51
             +  VS S D  LK+WD +  + +           +                      +
Sbjct: 23  CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82

Query: 52  ISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTT 110
            +  F   + F+    E++ + +      +   D+ K +       + ND +        
Sbjct: 83  ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH----R 138

Query: 111 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFV 170
           +++         W F       +        +L+L       +    F    D +     
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS----- 193

Query: 171 VDDDYVAVGSIDGNIYVWDCN 191
            +   +A G  +G + + + +
Sbjct: 194 -ERGLIATGFNNGTVQISELS 213

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 10/96 (10%), Positives = 23/96 (23%), Gaps = 10/96 (10%)

Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRA 167
            +  +S   D  ++ WD +  +     +                 + A            
Sbjct: 24  NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA----------IE 73

Query: 168 VFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH 203
               +   VA  S  G++  +    E     +    
Sbjct: 74  RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 109

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (149), Expect = 4e-12
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 35/200 (17%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL----------VTYDGAGTT 50
             A   GD   + +GS DR +++WD  +        S N+           V +   G +
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268

Query: 51  IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTT 110
           ++SG  D+ V+ W+ +      D +     T         T          V        
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV------TYIGHKDFVLSVATTQNDEY 322

Query: 111 IISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVF 169
           I+SG  D+ V FWD ++   +  ++ H   + S+ ++ G                  +  
Sbjct: 323 ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG------------------SSL 364

Query: 170 VVDDDYVAVGSIDGNIYVWD 189
             + +  A GS D    +W 
Sbjct: 365 GPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 6e-11
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 29/142 (20%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL---------------VTYD 45
               F  D   VVSGS DR++K+W+L++   K    + N                 V   
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 46  GAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTY 104
                I+SG  D+ V FWD ++   +  ++ H   + S+ ++ G              + 
Sbjct: 318 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG-------------SSL 364

Query: 105 DGAGTTIISGHFDKKVRFWDFR 126
                   +G  D K R W ++
Sbjct: 365 GPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 6e-07
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 22/165 (13%)

Query: 36  SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAG 95
                +    G G  I +G  D+ VR WD      V  ++   +  +             
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS----- 259

Query: 96  SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFA 155
                 V +   G +++SG  D+ V+ W+ +      D +     T      G   FV +
Sbjct: 260 ------VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
                           +D+Y+  GS D  +  WD  +     +L+
Sbjct: 314 -----------VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (141), Expect = 4e-11
 Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 44/181 (24%)

Query: 13  VSGSCDRTLKIWDLRSTETKFAGSSCNDLVT---YDGAGTTIISGHFDKKVRFWDFRAEE 69
           VSG+CD + K+WD+R    +   +     +    +   G    +G  D   R +D RA++
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259

Query: 70  KVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE 129
           ++        I  +                  V++  +G  +++G+ D     WD    +
Sbjct: 260 ELMTYSHDNIICGITS----------------VSFSKSGRLLLAGYDDFNCNVWDALKAD 303

Query: 130 KVRDIELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVW 188
           +   +  H  +++ L ++                         D   VA GS D  + +W
Sbjct: 304 RAGVLAGHDNRVSCLGVTD------------------------DGMAVATGSWDSFLKIW 339

Query: 189 D 189
           +
Sbjct: 340 N 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 2e-09
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 25/130 (19%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL-----VTYDGAGTTIISGH 55
               F  +     +GS D T +++DLR+ +     S  N +     V++  +G  +++G+
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 56  FDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISG 114
            D     WD    ++   +  H  +++ L ++                     G  + +G
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-------------------GMAVATG 330

Query: 115 HFDKKVRFWD 124
            +D  ++ W+
Sbjct: 331 SWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 20/114 (17%), Positives = 27/114 (23%), Gaps = 21/114 (18%)

Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFA----------- 155
               +SG  D   + WD R     +    H   I ++        F              
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 156 ---------EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
                        + C  T   F      +  G  D N  VWD        VL 
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 4e-11
 Identities = 39/214 (18%), Positives = 72/214 (33%), Gaps = 68/214 (31%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETK-----------------------FAGSS 37
              +   D T + S S D+T+++W + + E K                        + ++
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 38  CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGS 96
            ++       G  ++SG  DK ++ WD      +  +  H   +  +    G        
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG-------- 258

Query: 97  SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFA 155
                      G  I+S   DK +R WD++ +  ++ +  H   +TSLD  K        
Sbjct: 259 -----------GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-------- 299

Query: 156 EGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189
                              YV  GS+D  + VW+
Sbjct: 300 ----------------TAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 5e-11
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 28/205 (13%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE---TKFAGSSCNDLVTYDGAGTTIISGHFD 57
                + +   +VS S D+T+K+W++++     T         +V  +  GT I S   D
Sbjct: 105 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164

Query: 58  KKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVT--YDGAGTTIISGH 115
           + VR W    +E   ++  H  +          +  + S      T      G  ++SG 
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224

Query: 116 FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDY 175
            DK ++ WD      +  +  H                              +F     +
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVGHDNW-----------------------VRGVLFHSGGKF 261

Query: 176 VAVGSIDGNIYVWDCNTEQVEAVLK 200
           +   + D  + VWD   ++    L 
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 33/226 (14%), Positives = 56/226 (24%), Gaps = 30/226 (13%)

Query: 2   CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVR 61
              F    + +VS S D T+K+WD  + + +       D V       +           
Sbjct: 22  RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81

Query: 62  FWDFRAEEKVRDIEL---------------------------HGKITSLDLSKGTETKFA 94
                  +    I                               K+  +      +T   
Sbjct: 82  TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 141

Query: 95  GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVF 154
                 +V  +  GT I S   D+ VR W    +E   ++  H  +              
Sbjct: 142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE---CISWAPESS 198

Query: 155 AEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
                               ++  GS D  I +WD +T      L 
Sbjct: 199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 4e-09
 Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 37/183 (20%)

Query: 8   DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDG-AGTTIISGHFDKKVRFWDFR 66
           D   +VS S DRT+K+W+  + E     +     +         ++SG  D  +R WD  
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 206

Query: 67  AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126
               +R +E H                       +         I+SG +D K++ WD  
Sbjct: 207 CGACLRVLEGH--------------------EELVRCIRFDNKRIVSGAYDGKIKVWDLV 246

Query: 127 AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIY 186
           A    R       + +L    G+ + +                  D+  +   S D  I 
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRL----------------QFDEFQIVSSSHDDTIL 290

Query: 187 VWD 189
           +WD
Sbjct: 291 IWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 5e-05
 Identities = 36/200 (18%), Positives = 57/200 (28%), Gaps = 9/200 (4%)

Query: 8   DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA 67
           D  K+VSG  D T+KIWD  + E K   +     V        +I               
Sbjct: 24  DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83

Query: 68  EEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD----KKVRFW 123
             ++ +  +H     L L          S    +  +D A  T I+        +     
Sbjct: 84  TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 143

Query: 124 DFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG 183
               ++ +        I   + S  ++                A     D  V  GS D 
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSDN 198

Query: 184 NIYVWDCNTEQVEAVLKDMH 203
            I +WD        VL+   
Sbjct: 199 TIRLWDIECGACLRVLEGHE 218

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 3e-08
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 44/193 (22%)

Query: 8   DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVT-YDGAGTTIISGHFDKKVRFWDFR 66
           D   VVSGS D ++++WD+ +       +    L +  +     ++SG+ D  V+ WD +
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 245

Query: 67  AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126
             + ++ ++   K                   + +         +I+   D  V+ WD +
Sbjct: 246 TGQCLQTLQGPNK-----------------HQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 127 AEEKVRDIELH------GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS 180
             E +R++         G +  +  S  K                        +    G+
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG----------------SRN----GT 328

Query: 181 IDGNIYVWDCNTE 193
            +  + V D + +
Sbjct: 329 EETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 4e-05
 Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 45/194 (23%)

Query: 12  VVSGSCDRTLKIWDLRSTE--TKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE 69
           VVSG+ D  +K+WD  +        G +     +    G  ++SG  D  +R WD     
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRV-YSLQFDGIHVVSGSLDTSIRVWDVETGN 208

Query: 70  KVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE 129
            +  +  H  +TS                      +     ++SG+ D  V+ WD +   
Sbjct: 209 CIHTLTGHQSLTS--------------------GMELKDNILVSGNADSTVKIWDIK--- 245

Query: 130 KVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD 189
                                  +       +          + ++V   S DG + +WD
Sbjct: 246 -------------------TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 286

Query: 190 CNTEQVEAVLKDMH 203
             T +    L  + 
Sbjct: 287 LKTGEFIRNLVTLE 300

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 7e-05
 Identities = 33/197 (16%), Positives = 50/197 (25%), Gaps = 6/197 (3%)

Query: 8   DPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVT-YDGAGTTIISGHFDKKVRFWDFR 66
              ++VSGS D TLK+W   + +           V         IISG  D+ ++ W+  
Sbjct: 26  CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85

Query: 67  AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFR 126
             E +  +  H                        V     G  +               
Sbjct: 86  TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145

Query: 127 AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIY 186
              +V        +   D                           D  +V  GS+D +I 
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ-----FDGIHVVSGSLDTSIR 200

Query: 187 VWDCNTEQVEAVLKDMH 203
           VWD  T      L    
Sbjct: 201 VWDVETGNCIHTLTGHQ 217

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-07
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 24/88 (27%)

Query: 102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQ 161
           + +   G   +S   D  +  W       +   +    + S D+S               
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-------------- 316

Query: 162 CDFTRAVFVVDDDYVAVGSIDGNIYVWD 189
                     DD Y+  GS D    V++
Sbjct: 317 ----------DDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-06
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 19/83 (22%)

Query: 42  VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDL 101
           + +   G   +S   D  +  W       +   +    + S D+S               
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVD------------- 317

Query: 102 VTYDGAGTTIISGHFDKKVRFWD 124
                    I++G  DKK   ++
Sbjct: 318 ------DKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-06
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL--VTYDGAGTTIISGHFDK 58
           +  KF       VS   D  L  W      + F     + +           I++G  DK
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328

Query: 59  KVRFWD 64
           K   ++
Sbjct: 329 KATVYE 334

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 4e-06
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 22/82 (26%)

Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRA 167
           GT I S   DK ++ W+    +  + I +  +I    L                      
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG--------------------- 288

Query: 168 VFVVDDDYVAVGSIDGNIYVWD 189
             +     +   S +G I   +
Sbjct: 289 -IIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 1e-05
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET----KFAGSSCNDLVTYDGAGTTIISGHF 56
               +  D TK+ S S D+T+KIW++ + +            +  +        ++S   
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301

Query: 57  DKKVRFWD 64
           +  + F +
Sbjct: 302 NGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 5e-05
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 17/77 (22%)

Query: 48  GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA 107
           GT I S   DK ++ W+    +  + I +  +I    L                + +   
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG---------------IIWT-- 292

Query: 108 GTTIISGHFDKKVRFWD 124
              ++S   +  + F +
Sbjct: 293 KQALVSISANGFINFVN 309

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 5e-06
 Identities = 10/82 (12%), Positives = 22/82 (26%), Gaps = 20/82 (24%)

Query: 108 GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRA 167
                +   D  +R WD    + V+   L  +                       +    
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG--------------------NQQVG 302

Query: 168 VFVVDDDYVAVGSIDGNIYVWD 189
           V    +  +   S+DG +  ++
Sbjct: 303 VVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 1e-04
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTE--TKFAGSSCNDLVTYDG----AGTTIISG 54
           + A    D  K  +   D T+++WD+ +++   K+            G        IIS 
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314

Query: 55  HFDKKVRFWD 64
             D  + F++
Sbjct: 315 SLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 15/77 (19%)

Query: 48  GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA 107
                +   D  +R WD    + V+   L  +                     +      
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQ---------------QLGNQQVGVVATG 307

Query: 108 GTTIISGHFDKKVRFWD 124
              IIS   D  + F++
Sbjct: 308 NGRIISLSLDGTLNFYE 324

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 2e-05
 Identities = 22/203 (10%), Positives = 45/203 (22%), Gaps = 36/203 (17%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 60
               F  D   +   S        D       F   S   ++                  
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM- 240

Query: 61  RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGA----GTTIISGHF 116
                    +    +++ + + +++  G          + L+                  
Sbjct: 241 ----TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE 296

Query: 117 DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYV 176
              +  +D    +  +  E+   +T L LS                         D   V
Sbjct: 297 KGVLLKYDV---KTRKVTEVKNNLTDLRLSA------------------------DRKTV 329

Query: 177 AVGSIDGNIYVWDCNTEQVEAVL 199
            V   DG IY +     + E  +
Sbjct: 330 MVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 6e-04
 Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 5   FLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD 64
                           L  +D+++ +     ++  D +       T++    D K+  + 
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTD-LRLSADRKTVMVRKDDGKIYTFP 342

Query: 65  FRAEEKVRDIELHGK 79
               E  R +E   +
Sbjct: 343 LEKPEDERTVETDKR 357

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 8e-05
 Identities = 14/203 (6%), Positives = 51/203 (25%), Gaps = 34/203 (16%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL-------VTYDGAGTTIIS 53
                  + ++++ G  +  ++ + L   E        + L                   
Sbjct: 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC 211

Query: 54  GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIIS 113
              D +V    F  +    +           L+          +    + +      + +
Sbjct: 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS---IEFSPRHKFLYT 268

Query: 114 GHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDD 173
              D  +  W+ +  +K+++     + + + ++                          D
Sbjct: 269 AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA------------------------CSD 304

Query: 174 DYVAVGSIDGNIYVWDCNTEQVE 196
           + + + + D          + +E
Sbjct: 305 NILCLATSDDTFKTNAAIDQTIE 327

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 5e-04
 Identities = 10/136 (7%), Positives = 37/136 (27%), Gaps = 19/136 (13%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDL------------------V 42
             A    +       S D  + +         +  S                       +
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257

Query: 43  TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLV 102
            +      + +   D  +  W+ +  +K+++     + + + ++  ++     ++ +D  
Sbjct: 258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC-SDNILCLATSDDTF 316

Query: 103 TYDGAGTTIISGHFDK 118
             + A    I  +   
Sbjct: 317 KTNAAIDQTIELNASS 332

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 4e-04
 Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 17/133 (12%)

Query: 1   MCAKFLGDPTKVVSGSCDRT-LKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDK 58
           +   F+ + + V +G      L  +D  + +  F G        +  G        + DK
Sbjct: 247 LAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306

Query: 59  KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDK 118
           K       A     D      ++ + +  G                    +   +   D 
Sbjct: 307 KASSEGSAAAGAGLDSLHKNSVSQISVLSGG---------------KAKCSQFCTTGMDG 351

Query: 119 KVRFWDFRAEEKV 131
            +  WD R+ E  
Sbjct: 352 GMSIWDVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 5/69 (7%)

Query: 2  CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-----AGSSCNDLVTYDGAGTTIISGHF 56
          C  +  D T++     +  + I++    +          +     V +      I++   
Sbjct: 12 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 57 DKKVRFWDF 65
          D+    W  
Sbjct: 72 DRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 27/93 (29%)

Query: 102 VTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG---KITSLDLSKGKYYFVFAEGF 158
             ++   T I     + +V  ++    + V+  EL     ++T +D +            
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP----------- 61

Query: 159 KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN 191
                        D + +     D N YVW   
Sbjct: 62  -------------DSNRIVTCGTDRNAYVWTLK 81

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 6e-04
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 9/59 (15%)

Query: 13  VSGSCDRTLKIWDLRS-------TETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD 64
            +GS D ++ +W++          +   A SS N ++  +   TTI+S   D  ++FW+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFWN 296

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 21/202 (10%), Positives = 53/202 (26%), Gaps = 31/202 (15%)

Query: 5   FLGDPTKVVSGSC-DRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFW 63
              D +        + T +I        +       +   Y      ++   +  K+   
Sbjct: 164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI--NHPAYSQKAGRLVWPTYTGKIHQI 221

Query: 64  DFRAEEKVRDIELHGKIT---SLDLSKGTETKFAGSSCNDLVTYDGA-GTTIISGHFDKK 119
           D  + +      +        +     G   + A     D +                + 
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281

Query: 120 VRFWDFRAEEKVRDIELHGKITSLDLSK-GKYYFVFAEGFKVQCDFTRAVFVVDDDYVAV 178
           V   D +  E++   E+  +I S+++S+  K                           A+
Sbjct: 282 VVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLY-----------------------AL 318

Query: 179 GSIDGNIYVWDCNTEQVEAVLK 200
            + D  +Y+ D  + +    + 
Sbjct: 319 STGDKTLYIHDAESGEELRSVN 340

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 8/143 (5%)

Query: 5   FLGDPTKVVSGSCDRTLKIWDLRSTETKF-----AGSSCNDLVTYDGAGTTIISGHFDKK 59
           +     ++V  +    +   DL S + KF     A +       +   G   ++ H    
Sbjct: 202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 261

Query: 60  VRFWDFRAEEKVRDIELHGKITSLDLSKGTETKF--AGSSCNDL-VTYDGAGTTIISGHF 116
             +      ++ R       +  LD   G        G   + + V+ D           
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321

Query: 117 DKKVRFWDFRAEEKVRDIELHGK 139
           DK +   D  + E++R +   G 
Sbjct: 322 DKTLYIHDAESGEELRSVNQLGH 344

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 8e-04
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-----GSSCNDLVTYDGAGTTIISGH 55
              +   +   V +GS D  + I+ ++                N+L+      +T++S  
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSG 276

Query: 56  FDKKVRFWD 64
            D  ++ W+
Sbjct: 277 ADACIKRWN 285

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 10/197 (5%), Positives = 40/197 (20%), Gaps = 24/197 (12%)

Query: 5   FLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWD 64
                +   S               +   A +  +     +  G  + +           
Sbjct: 181 GSCPASLAASDLAAAPAAAGI-VGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239

Query: 65  FRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFW 123
                    I+ +     + +         A     D +       +       +     
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299

Query: 124 DFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDG 183
                +    I       ++  ++               D     +          +   
Sbjct: 300 TASVGQTSGPISNGHDSDAIIAAQ---------------DGASDNYAN-------SAGTE 337

Query: 184 NIYVWDCNTEQVEAVLK 200
            + ++D  ++Q ++ ++
Sbjct: 338 VLDIYDAASDQDQSSVE 354

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 20/205 (9%), Positives = 48/205 (23%), Gaps = 29/205 (14%)

Query: 1   MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV 60
               +  D +K+     D  +   +  +        S             + + H    V
Sbjct: 138 TMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197

Query: 61  RFWDFRAEE----KVRDIELHGKITSLDLSKGTETKFA-GSSCNDLVTYDGAGTTIISGH 115
               F                  + ++DL  G               +         +  
Sbjct: 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG 257

Query: 116 FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDY 175
               +  +D      ++ + L     S+++S                         D   
Sbjct: 258 AYNVLESFDLEKNASIKRVPLPHSYYSVNVST------------------------DGST 293

Query: 176 VAVGSIDGNIYVWDCNTEQVEAVLK 200
           V +G   G++  +D  T + +  + 
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVD 318

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 24/100 (24%)

Query: 101 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKV 160
           L   D      ++     ++   D  +++ V+ I+    +    +S              
Sbjct: 25  LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA------------- 71

Query: 161 QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK 200
                         Y+ V   D  I + D   ++   V +
Sbjct: 72  -----------SGRYLLVIGRDARIDMIDLWAKEPTKVAE 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.89
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.88
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.86
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.82
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.78
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.76
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.74
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.74
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.73
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.72
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.68
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.61
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.54
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.5
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.5
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.44
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.34
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.24
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.91
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.81
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.63
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.58
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.4
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.26
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.17
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.68
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.65
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.44
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.38
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.27
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.13
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.95
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.87
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.89
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.81
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.79
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.28
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.85
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.76
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.72
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.61
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.49
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.92
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	93.11
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	92.82
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.52
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	91.59
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.38
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	90.32
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	89.95
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	85.51
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	85.22
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	82.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	81.8

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-27  Score=180.69  Aligned_cols=199  Identities=17%  Similarity=0.262  Sum_probs=153.4

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCe-----EEec---CcCceEEEEeCCCCEEEEecCCCeEEEEECCCce--E
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTET-----KFAG---SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE--K   70 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-----~~~~---~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~--~   70 (203)
                      .|++|+|++++|+||+ ||.|++||+.....     ....   ......++|+|++++|++|+.|++|++||+....  .
T Consensus        55 ~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~  133 (337)
T d1gxra_          55 CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI  133 (337)
T ss_dssp             CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred             EEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccc
Confidence            4789999999999997 89999999976331     1111   1223457899999999999999999999987543  3


Q ss_pred             EEeeeeC-CeEEEEEecCCCceEEEecCCc-----------------------eEEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          71 VRDIELH-GKITSLDLSKGTETKFAGSSCN-----------------------DLVTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        71 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                      ...+..+ ..+..+.+++++..++.+....                       ..+.|++++..+++++.|++|++||++
T Consensus       134 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~  213 (337)
T d1gxra_         134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455544 4688888998887766544322                       135688999999999999999999999


Q ss_pred             CCceEEEEeccceEEEEEecCCcEEEEeec--Ce----------e-----EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         127 AEEKVRDIELHGKITSLDLSKGKYYFVFAE--GF----------K-----VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~----------~-----~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      +++.++.+.....+.++.+++....++...  +.          .     ....+..+.|+|++++|++|+.|+.|++||
T Consensus       214 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd  293 (337)
T d1gxra_         214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEE
Confidence            999998888888899999887765554321  10          0     112456778999999999999999999999


Q ss_pred             CCCceeeeeec
Q psy8891         190 CNTEQVEAVLK  200 (203)
Q Consensus       190 ~~~~~~~~~~~  200 (203)
                      +.+++++..++
T Consensus       294 ~~~~~~~~~~~  304 (337)
T d1gxra_         294 TPYGASIFQSK  304 (337)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CCCCCEEEEcc
Confidence            99999988764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.3e-27  Score=180.51  Aligned_cols=202  Identities=20%  Similarity=0.325  Sum_probs=154.7

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---------------------cCcCceEEEEeCCCCEEEEecCCCe
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---------------------GSSCNDLVTYDGAGTTIISGHFDKK   59 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---------------------~~~~~~~~~~~~~~~~l~s~~~D~~   59 (203)
                      .|++|+|||++|+||+ |++|++||+.+++....                     .......++|+|++++|++|+.|++
T Consensus        66 ~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~  144 (388)
T d1erja_          66 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL  144 (388)
T ss_dssp             CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccc
Confidence            4899999999999987 89999999987553211                     0111234678999999999999999


Q ss_pred             EEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEE-----------------------EEcCCCCEEEEee
Q psy8891          60 VRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLV-----------------------TYDGAGTTIISGH  115 (203)
Q Consensus        60 i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~l~s~s  115 (203)
                      |++||...++.+..+..| ..|.++++.++...++.+.....+.                       .+.+++.+|++++
T Consensus       145 v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  224 (388)
T d1erja_         145 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS  224 (388)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEc
Confidence            999999999887777654 6799999999888777765554332                       2345788999999


Q ss_pred             CCCeEEEEECCCCceEEEEec--------cceEEEEEecCCcEEEEeec--Cee--------------------------
Q psy8891         116 FDKKVRFWDFRAEEKVRDIEL--------HGKITSLDLSKGKYYFVFAE--GFK--------------------------  159 (203)
Q Consensus       116 ~d~~i~iWd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~--~~~--------------------------  159 (203)
                      .|+.|++||.+++.....+..        ...|.++.++++...++...  +..                          
T Consensus       225 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  304 (388)
T d1erja_         225 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY  304 (388)
T ss_dssp             TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred             CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeec
Confidence            999999999999887766542        24588888887655444321  100                          


Q ss_pred             --EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         160 --VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       160 --~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                        ....+..+.++|++++|++|+.|++|++||+++++++.++++|.
T Consensus       305 ~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~  350 (388)
T d1erja_         305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR  350 (388)
T ss_dssp             ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             ccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC
Confidence              01134567788999999999999999999999999999998763

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=3.6e-27  Score=179.56  Aligned_cols=183  Identities=18%  Similarity=0.182  Sum_probs=126.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----Ee-cCcCceEEEEeCCCCEEEEecC--CCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----FA-GSSCNDLVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~~-~~~~~~~~~~~~~~~~l~s~~~--D~~i~vwd~~~~~~~~~~   74 (203)
                      |++|+|+|++|+||+.|++|++||+......    +. +......+.|+|++++|++++.  +..++||++++++....+
T Consensus        63 ~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l  142 (311)
T d1nr0a1          63 VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL  142 (311)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC
T ss_pred             EEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccc
Confidence            7899999999999999999999999875421    22 2233455788999999999975  567999999998887777


Q ss_pred             eeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEE
Q psy8891          75 ELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYF  152 (203)
Q Consensus        75 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~  152 (203)
                      ..| ..|.+++++|++..                  .|++++.|++|++||+++++....+..+ ..+.++.++++..++
T Consensus       143 ~~h~~~v~~v~~~~~~~~------------------~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l  204 (311)
T d1nr0a1         143 TGQARAMNSVDFKPSRPF------------------RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF  204 (311)
T ss_dssp             CCCSSCEEEEEECSSSSC------------------EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccee------------------eecccccccccccccccccccccccccccccccccccCcccccc
Confidence            655 45888887775543                  2444555555555555554444444332 234444444443333


Q ss_pred             Eeec--Ce-----------------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         153 VFAE--GF-----------------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       153 ~~~~--~~-----------------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      +...  +.                       .+...+..+.|+|++++|++|+.|++|+|||+++++++++++.+
T Consensus       205 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence            2211  00                       00123556788999999999999999999999999999998755

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=5.1e-27  Score=182.35  Aligned_cols=196  Identities=13%  Similarity=0.142  Sum_probs=140.1

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--E--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeee-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET--K--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIE-   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~-   75 (203)
                      |++|+||++.|++|+.|++|++||+.+.+.  .  +.+ ......+.|+|++++|+||+.|++|+|||++.+.....+. 
T Consensus        12 ~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~   91 (371)
T d1k8kc_          12 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI   91 (371)
T ss_dssp             EEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccc
Confidence            789999999999999999999999986542  1  222 3345567899999999999999999999998776543332 


Q ss_pred             --eCCeEEEEEecCCCceEEEecCCce---------------------------EEEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          76 --LHGKITSLDLSKGTETKFAGSSCND---------------------------LVTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        76 --~~~~v~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                        ....|.+++++|++..++.++....                           .+.|+|++++|++++.|++|++||..
T Consensus        92 ~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~  171 (371)
T d1k8kc_          92 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  171 (371)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeec
Confidence              2467999999999888776554322                           25688999999999999999999987


Q ss_pred             CCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         127 AEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      ..............  ...........   .......+..++|+|++++|++++.|++|++||+.+++.+.+++.|
T Consensus       172 ~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  242 (371)
T d1k8kc_         172 IKEVEERPAPTPWG--SKMPFGELMFE---SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  242 (371)
T ss_dssp             CTTTSCCCCCBTTB--SCCCTTCEEEE---CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             cCcccccccccccc--ccccceeeeee---ccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecc
Confidence            54322111100000  00000001110   0011123456778999999999999999999999999999988765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-24  Score=166.83  Aligned_cols=189  Identities=21%  Similarity=0.299  Sum_probs=145.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe--E--Eec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET--K--FAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~--~--~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~   76 (203)
                      +++|+||++.|++|+.|++|++||+.....  .  ... ......+.+.+++..+++++.|+.|++||+++++.......
T Consensus       102 ~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~  181 (337)
T d1gxra_         102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             EEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            689999999999999999999999976432  1  122 22234467889999999999999999999999887766654


Q ss_pred             -CCeEEEEEecCCCceEEEecCCce----------------------EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE
Q psy8891          77 -HGKITSLDLSKGTETKFAGSSCND----------------------LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD  133 (203)
Q Consensus        77 -~~~v~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~  133 (203)
                       ...+.++++++++..++.+...+.                      .+.|+|++..|++++.|+.|++||+++++....
T Consensus       182 ~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  261 (337)
T d1gxra_         182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL  261 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccc
Confidence             467999999998877776544322                      246789999999999999999999998887665


Q ss_pred             EeccceEEEEEecCCcEEEEeec--Ce---------------eEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         134 IELHGKITSLDLSKGKYYFVFAE--GF---------------KVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       134 ~~~~~~v~~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      ......+..+.++++..+++...  +.               .....+..+.++|++++|++|+.|++|+|||+
T Consensus       262 ~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            55556789998887755554321  11               01124567789999999999999999999995

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.1e-24  Score=163.55  Aligned_cols=201  Identities=19%  Similarity=0.272  Sum_probs=144.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE----EEee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK----VRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~----~~~~   74 (203)
                      |++|+|++.+|+|||.||+|++||+.+++...  . +......+.+.|+++++++|+.|+.+++|+......    ...+
T Consensus        60 ~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~  139 (340)
T d1tbga_          60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL  139 (340)
T ss_dssp             EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEE
T ss_pred             EEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceec
Confidence            78999999999999999999999998876432  2 223345578899999999999999999999765432    2233


Q ss_pred             eeCCe-EEEEEecCCCceEE---------E-------------ecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceE
Q psy8891          75 ELHGK-ITSLDLSKGTETKF---------A-------------GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV  131 (203)
Q Consensus        75 ~~~~~-v~~~~~~~~~~~~~---------~-------------~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~  131 (203)
                      ..+.. ........+.....         .             .........+.+.+..+++++.|+.|++||+++++++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~  219 (340)
T d1tbga_         140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR  219 (340)
T ss_dssp             CCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEE
Confidence            32221 11111111110000         0             0111123456778889999999999999999999998


Q ss_pred             EEEecc-ceEEEEEecCCcEEEEeecC--e-e-----------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         132 RDIELH-GKITSLDLSKGKYYFVFAEG--F-K-----------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       132 ~~~~~~-~~v~~~~~~~~~~~~~~~~~--~-~-----------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      ..+..+ ..|.++.++++...++....  . .                 ....+..+.++|++++|++|+.|+.|++||+
T Consensus       220 ~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~  299 (340)
T d1tbga_         220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred             EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEEC
Confidence            888765 56899999887655544321  1 0                 0123567788999999999999999999999


Q ss_pred             CCceeeeeeccC
Q psy8891         191 NTEQVEAVLKDM  202 (203)
Q Consensus       191 ~~~~~~~~~~~~  202 (203)
                      .+++++.++++|
T Consensus       300 ~~~~~~~~~~~H  311 (340)
T d1tbga_         300 LKADRAGVLAGH  311 (340)
T ss_dssp             TTCCEEEEECCC
T ss_pred             CCCcEEEEEcCC
Confidence            999999999876

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.2e-24  Score=161.18  Aligned_cols=182  Identities=20%  Similarity=0.327  Sum_probs=115.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Eec-CcCc---------------------------------------
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAG-SSCN---------------------------------------   39 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~-~~~~---------------------------------------   39 (203)
                      +++|+|++.+|+|||.|++||+||+.+++..  +.. ....                                       
T Consensus        22 ~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (317)
T d1vyhc1          22 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD  101 (317)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccccccc
Confidence            7899999999999999999999999764321  110 0001                                       


Q ss_pred             ---eEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee
Q psy8891          40 ---DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH  115 (203)
Q Consensus        40 ---~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  115 (203)
                         ....+.++++.+++++.|+.+++||+++++....+..+ ..+..++                   |++++.+|++++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~  162 (317)
T d1vyhc1         102 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR-------------------PNQDGTLIASCS  162 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-------------------ECTTSSEEEEEE
T ss_pred             ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeee-------------------cccCCCEEEEEe
Confidence               11234556677888888888888888777766666543 3344444                   445556677777


Q ss_pred             CCCeEEEEECCCCceEEEEeccc-eEEEEEec---------------------CCcEEEEee-----------cCee---
Q psy8891         116 FDKKVRFWDFRAEEKVRDIELHG-KITSLDLS---------------------KGKYYFVFA-----------EGFK---  159 (203)
Q Consensus       116 ~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~---------------------~~~~~~~~~-----------~~~~---  159 (203)
                      .|+.|++||+.+++....+..+. .+..+.+.                     ++..+....           .+..   
T Consensus       163 ~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence            77777777776666555443221 12222110                     011111000           0000   


Q ss_pred             ---EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         160 ---VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       160 ---~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                         ....+..+.++|++++|++|+.|+.|++||+.++++++++++|
T Consensus       243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h  288 (317)
T d1vyhc1         243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH  288 (317)
T ss_dssp             EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC
Confidence               0113456678899999999999999999999999999999876

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=7.1e-24  Score=159.06  Aligned_cols=195  Identities=15%  Similarity=0.201  Sum_probs=140.3

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec----CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE----Ee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG----SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV----RD   73 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~----~~   73 (203)
                      |++|+||+++|+|||.|++|++||+++++.....    ......+.+.|+++ +++++.|+++++|++......    ..
T Consensus        17 ~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~   95 (299)
T d1nr0a2          17 ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVA   95 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccccccccc
Confidence            7899999999999999999999999987654321    22234567888875 667788999999998654321    11


Q ss_pred             eeeCCeEEEEEecCCCceEEEecCC------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE--
Q psy8891          74 IELHGKITSLDLSKGTETKFAGSSC------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD--  133 (203)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~--  133 (203)
                      ......+..+++++++..+..+...                  ...+.|+|+++.|++++.|+.|++||+++++....  
T Consensus        96 ~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~  175 (299)
T d1nr0a2          96 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT  175 (299)
T ss_dssp             EECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2234567888888887655443221                  23467899999999999999999999987765432  


Q ss_pred             EeccceEEEEEecCCcEEEEeecC--e----------e---------EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCC
Q psy8891         134 IELHGKITSLDLSKGKYYFVFAEG--F----------K---------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNT  192 (203)
Q Consensus       134 ~~~~~~v~~~~~~~~~~~~~~~~~--~----------~---------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~  192 (203)
                      ......|.++.+++....++....  .          .         ....+..+.++|++++|++|+.|++|++||+++
T Consensus       176 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         176 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCC
Confidence            233456889988876544443211  0          0         012356678999999999999999999999987


Q ss_pred             ceeee
Q psy8891         193 EQVEA  197 (203)
Q Consensus       193 ~~~~~  197 (203)
                      ++...
T Consensus       256 ~~~~~  260 (299)
T d1nr0a2         256 PSDHP  260 (299)
T ss_dssp             TTSCC
T ss_pred             CCcce
Confidence            65544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.8e-23  Score=159.48  Aligned_cols=179  Identities=17%  Similarity=0.215  Sum_probs=129.9

Q ss_pred             ceEEcC--CCCEEEEEeCCCcEEEEeCCCCCe----E------E-ecCcCceEEEEeCCCCEEEEec--CCCeEEEEECC
Q psy8891           2 CAKFLG--DPTKVVSGSCDRTLKIWDLRSTET----K------F-AGSSCNDLVTYDGAGTTIISGH--FDKKVRFWDFR   66 (203)
Q Consensus         2 ~~~~~~--~~~~l~t~s~D~~v~lwdl~~~~~----~------~-~~~~~~~~~~~~~~~~~l~s~~--~D~~i~vwd~~   66 (203)
                      +++|+|  ++.+|+||+.||+|++||+...+.    .      . ........+.|+++++.|++++  .++.+++|+..
T Consensus        68 ~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~  147 (325)
T d1pgua1          68 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD  147 (325)
T ss_dssp             EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred             EEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeec
Confidence            689997  668999999999999999864221    1      0 1122334577899999887765  47789999999


Q ss_pred             CceEEEeeeeC-CeEEEEEecCCCceE-EEecCCce--------------------------EEEEcCC-CCEEEEeeCC
Q psy8891          67 AEEKVRDIELH-GKITSLDLSKGTETK-FAGSSCND--------------------------LVTYDGA-GTTIISGHFD  117 (203)
Q Consensus        67 ~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~~~~~--------------------------~~~~~~~-~~~l~s~s~d  117 (203)
                      +++.+..+..| ..|.+++++++.... +++...+.                          .+.|+|+ +.+|++++.|
T Consensus       148 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d  227 (325)
T d1pgua1         148 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  227 (325)
T ss_dssp             TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             ccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccc
Confidence            99888887754 568999998876653 33322211                          2467775 5788888899


Q ss_pred             CeEEEEECCCCceEEEEeccce-EEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         118 KKVRFWDFRAEEKVRDIELHGK-ITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       118 ~~i~iWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      ++|++||+++++.++.+..+.. +..                     .......+++++|++++.|+.|+|||+++++++
T Consensus       228 ~~i~iwd~~~~~~~~~l~~~~~~v~~---------------------~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         228 RKISCFDGKSGEFLKYIEDDQEPVQG---------------------GIFALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCS---------------------CEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cceeeeeecccccccccccccccccc---------------------ceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            9999999888887776654321 100                     011122368899999999999999999999999


Q ss_pred             eeecc
Q psy8891         197 AVLKD  201 (203)
Q Consensus       197 ~~~~~  201 (203)
                      +.+..
T Consensus       287 ~~~~~  291 (325)
T d1pgua1         287 QKWTL  291 (325)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            98764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=2.2e-23  Score=158.36  Aligned_cols=168  Identities=14%  Similarity=0.148  Sum_probs=126.5

Q ss_pred             ceEEcCCCCEEEEEeC--CCcEEEEeCCCCCeEE--ec-CcCceEEEEeCCCC-EEEEecCCCeEEEEECCCceEEEeee
Q psy8891           2 CAKFLGDPTKVVSGSC--DRTLKIWDLRSTETKF--AG-SSCNDLVTYDGAGT-TIISGHFDKKVRFWDFRAEEKVRDIE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~--D~~v~lwdl~~~~~~~--~~-~~~~~~~~~~~~~~-~l~s~~~D~~i~vwd~~~~~~~~~~~   75 (203)
                      +++|+|++++|++++.  +..+++||+++.+...  .. ......+.++|+++ .|++|+.|+.|++||+++++....+.
T Consensus       107 ~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~  186 (311)
T d1nr0a1         107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG  186 (311)
T ss_dssp             EEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccc
Confidence            6899999999999886  4569999998755422  11 22234567888877 58999999999999999998887776


Q ss_pred             eC-CeEEEEEecCCCceEEEecCCc------------------------------eEEEEcCCCCEEEEeeCCCeEEEEE
Q psy8891          76 LH-GKITSLDLSKGTETKFAGSSCN------------------------------DLVTYDGAGTTIISGHFDKKVRFWD  124 (203)
Q Consensus        76 ~~-~~v~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~s~s~d~~i~iWd  124 (203)
                      .+ ..|.++.++|++..++.+...+                              ..+.|+|++++|++++.|++|++||
T Consensus       187 ~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  266 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEE
Confidence            54 5799999999888776554322                              1356888899999999999999999


Q ss_pred             CCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         125 FRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       125 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      +++++++++++.+..+.                      ...+.+.+++++|++++.||.|++||++
T Consensus       267 ~~t~~~~~~l~~~~~~~----------------------~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         267 VATLKVEKTIPVGTRIE----------------------DQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TTTTEEEEEEECCSSGG----------------------GCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCCCcEEEEEECCCCcc----------------------ceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99888877776543210                      0012234567789999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.3e-23  Score=156.05  Aligned_cols=202  Identities=13%  Similarity=0.139  Sum_probs=126.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCe----E--EecCcCceEEEEeCC-CCEEEEecCCCeEEEEECCCceEEEee
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTET----K--FAGSSCNDLVTYDGA-GTTIISGHFDKKVRFWDFRAEEKVRDI   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~----~--~~~~~~~~~~~~~~~-~~~l~s~~~D~~i~vwd~~~~~~~~~~   74 (203)
                      +++|+|++.+|+|||.|++||+||++....    .  ..+......++|.++ +..|+||+.|++|++|++.........
T Consensus        16 ~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~   95 (342)
T d1yfqa_          16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL   95 (342)
T ss_dssp             EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC
T ss_pred             EEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccc
Confidence            689999999999999999999999975431    1  123333445667664 558999999999999999877654433


Q ss_pred             eeC--CeEEEEEecCCCceEEEecCCce-----------------------------EEEEcCCCCEEEEeeCCCeEEEE
Q psy8891          75 ELH--GKITSLDLSKGTETKFAGSSCND-----------------------------LVTYDGAGTTIISGHFDKKVRFW  123 (203)
Q Consensus        75 ~~~--~~v~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~s~s~d~~i~iW  123 (203)
                      ..+  .........++...++.+.....                             ...+.+.+..+++++.|++|++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  175 (342)
T d1yfqa_          96 TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF  175 (342)
T ss_dssp             BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEE
Confidence            222  11122222223333333222222                             23455667889999999999999


Q ss_pred             ECCCCceEEEEe----ccceEEEEEecC-CcEEEEe-e-cC-------------------------------eeEEeeeE
Q psy8891         124 DFRAEEKVRDIE----LHGKITSLDLSK-GKYYFVF-A-EG-------------------------------FKVQCDFT  165 (203)
Q Consensus       124 d~~~~~~~~~~~----~~~~v~~~~~~~-~~~~~~~-~-~~-------------------------------~~~~~~~~  165 (203)
                      |++..+......    ...........+ ....+.. . .+                               ......+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  255 (342)
T d1yfqa_         176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN  255 (342)
T ss_dssp             ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred             ecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccce
Confidence            998665422111    111222222111 1111110 0 00                               00112345


Q ss_pred             EEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccCC
Q psy8891         166 RAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDMH  203 (203)
Q Consensus       166 ~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  203 (203)
                      .+.|+|++++|+||+.||.|++||+++++.++++..+|
T Consensus       256 ~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~  293 (342)
T d1yfqa_         256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN  293 (342)
T ss_dssp             EEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             eEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence            67899999999999999999999999999999886543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=8.4e-24  Score=165.19  Aligned_cols=164  Identities=16%  Similarity=0.265  Sum_probs=117.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCC------------e-E----Ee----cCcCceEEEEeCCCCEEEEecCCCeEEEEECCC
Q psy8891           9 PTKVVSGSCDRTLKIWDLRSTE------------T-K----FA----GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRA   67 (203)
Q Consensus         9 ~~~l~t~s~D~~v~lwdl~~~~------------~-~----~~----~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~   67 (203)
                      +..+++++.|+++++||+....            . .    ..    .......+.++|++ +|+||+.|++|+|||+++
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            4578999999999999974211            0 0    00    01112346788876 999999999999999999


Q ss_pred             ceEEEeeeeC-------CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCe---EEEEECCCCceEEEEecc
Q psy8891          68 EEKVRDIELH-------GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKK---VRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        68 ~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~---i~iWd~~~~~~~~~~~~~  137 (203)
                      ++++..+...       .+|.+                   +.|+|+|++|++|+.|++   |++||+.+++.+..+...
T Consensus       215 ~~~~~~~~~~~~l~~h~~~V~~-------------------l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~  275 (393)
T d1sq9a_         215 LRPLYNFESQHSMINNSNSIRS-------------------VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  275 (393)
T ss_dssp             TEEEEEEECCC---CCCCCEEE-------------------EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             cccccccccccccccccceEEE-------------------cccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence            8877665432       23444                   446667889999999974   999999999888776543


Q ss_pred             ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         138 GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       138 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      .......          .....+...++.++|+|++++|+||+.|++|++||+.+|++++++++|
T Consensus       276 ~~~~~~~----------~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH  330 (393)
T d1sq9a_         276 THSSQAS----------LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH  330 (393)
T ss_dssp             ------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccccce----------eeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCc
Confidence            2111000          000112224567889999999999999999999999999999999987

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.7e-23  Score=158.94  Aligned_cols=172  Identities=24%  Similarity=0.423  Sum_probs=132.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--cCc-CceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeee--
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--GSS-CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL--   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~~~-~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~--   76 (203)
                      ++.|++++..+++|+.++.+++||+.+......  ... ...+..+.+++++|++|+.|+.|++||++++.....+..  
T Consensus       168 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  247 (388)
T d1erja_         168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN  247 (388)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---
T ss_pred             ccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccc
Confidence            567899999999999999999999987654322  222 223334456888999999999999999998877665532  


Q ss_pred             ------CCeEEEEEecCCCceEEEecCCce-----------------------------------EEEEcCCCCEEEEee
Q psy8891          77 ------HGKITSLDLSKGTETKFAGSSCND-----------------------------------LVTYDGAGTTIISGH  115 (203)
Q Consensus        77 ------~~~v~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~l~s~s  115 (203)
                            .+.|.++++++++..+++++..+.                                   .+.|+|++++|++|+
T Consensus       248 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~  327 (388)
T d1erja_         248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS  327 (388)
T ss_dssp             ---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred             ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe
Confidence                  357999999999888776654332                                   245778899999999


Q ss_pred             CCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         116 FDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       116 ~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      .|++|++||+++++++..+..|. .|.++.+..                  ...++|++.+|+||+.|++|+|||++
T Consensus       328 ~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~------------------~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN------------------GSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECS------------------SCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCCEEEEEEec------------------CcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999999999988887653 455554332                  12356789999999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3e-22  Score=149.41  Aligned_cols=188  Identities=19%  Similarity=0.319  Sum_probs=130.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--e-cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--A-GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~-~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-   77 (203)
                      ++.|++++..+++++.|+.+++||+++++...  . .......+.+.++++.|++++.|+.|++|+++.++....+..+ 
T Consensus       106 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~  185 (317)
T d1vyhc1         106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR  185 (317)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             eeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCC
Confidence            46789999999999999999999998866432  2 2233455678899999999999999999999999887777654 


Q ss_pred             CeEEEEEecCCCceEEEec-CCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEee
Q psy8891          78 GKITSLDLSKGTETKFAGS-SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFA  155 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~  155 (203)
                      ..+..+++.++........ ...........+..+++++.|+.|++||+++++++..+..+ ..+.++.++++..+++..
T Consensus       186 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  265 (317)
T d1vyhc1         186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC  265 (317)
T ss_dssp             SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            5688888887654322111 11122333445667778888888888888877777776654 357777766654433322


Q ss_pred             c--Ce-------------e---EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         156 E--GF-------------K---VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       156 ~--~~-------------~---~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      .  +.             .   +...++.+.++|++++|+||+.|++|++||
T Consensus       266 ~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            1  10             0   012456677889999999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-21  Score=146.97  Aligned_cols=195  Identities=19%  Similarity=0.282  Sum_probs=124.5

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec---CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC---
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG---SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH---   77 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~---~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~---   77 (203)
                      +++++|++|+|||.|++||+||+.+++.....   ......+.+.+  +.|+||+.|+++++|+.............   
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~   99 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTST   99 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceecccccccccccccceeccccccee
Confidence            47788999999999999999999987754322   12223345554  59999999999999998766543322111   


Q ss_pred             -----------------CeEEEEEecC-------------------CCceEEEecCCc---------------------e
Q psy8891          78 -----------------GKITSLDLSK-------------------GTETKFAGSSCN---------------------D  100 (203)
Q Consensus        78 -----------------~~v~~~~~~~-------------------~~~~~~~~~~~~---------------------~  100 (203)
                                       ..+...+...                   .....+.+....                     .
T Consensus       100 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  179 (342)
T d2ovrb2         100 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR  179 (342)
T ss_dssp             EEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC
T ss_pred             EeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccc
Confidence                             1111111100                   001111111111                     1


Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-eEEEEEecCCcEEEEeecCee---------EEe--------
Q psy8891         101 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG-KITSLDLSKGKYYFVFAEGFK---------VQC--------  162 (203)
Q Consensus       101 ~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~---------~~~--------  162 (203)
                      ...+.+++..+++++.|++|++||++.++++..+..+. .+.++..+++........+..         ...        
T Consensus       180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  259 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH  259 (342)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC
T ss_pred             cccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEeccccccccccccccee
Confidence            23455678899999999999999999999888776653 466666665432222111110         000        


Q ss_pred             eeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         163 DFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       163 ~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ......+.++++++++|+.||+|++||++++++++++.
T Consensus       260 ~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            11223455678899999999999999999999998874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=5.5e-22  Score=150.01  Aligned_cols=145  Identities=24%  Similarity=0.423  Sum_probs=113.9

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe--c-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC--
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA--G-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH--   77 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~--~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~--   77 (203)
                      ..+.+++..+++|+.|++|++||+++.+....  . ......++++|++++|++|+.|+.|++||++.......+...  
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~  269 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI  269 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred             eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccc
Confidence            45678889999999999999999988765332  2 223445788999999999999999999999988876554322  


Q ss_pred             -CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeec
Q psy8891          78 -GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAE  156 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  156 (203)
                       ..+.++                   .|+|++++|++++.|+.|++||+.+++++..+..|..                 
T Consensus       270 ~~~i~~~-------------------~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~-----------------  313 (340)
T d1tbga_         270 ICGITSV-------------------SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-----------------  313 (340)
T ss_dssp             CSCEEEE-------------------EECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-----------------
T ss_pred             cCceEEE-------------------EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC-----------------
Confidence             234444                   4566778999999999999999999998887765421                 


Q ss_pred             CeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         157 GFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                            .+..+.++|++.+|+||+.||+|++||
T Consensus       314 ------~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         314 ------RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ------CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                  123455678999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.1e-21  Score=151.94  Aligned_cols=166  Identities=17%  Similarity=0.228  Sum_probs=122.9

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--Ee--c-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee--
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FA--G-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI--   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~--~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~--   74 (203)
                      +++|+|++++|+|||.|++|++||+.+....  ..  . ......+.|+|+++.|++|+.|++|++|++.........  
T Consensus        56 ~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~  135 (371)
T d1k8kc_          56 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH  135 (371)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccc
Confidence            6889999999999999999999999865422  11  1 222445678999999999999999999998765432221  


Q ss_pred             --e-eCCeEEEEEecCCCceEEEecCCc-----------------------------------------eEEEEcCCCCE
Q psy8891          75 --E-LHGKITSLDLSKGTETKFAGSSCN-----------------------------------------DLVTYDGAGTT  110 (203)
Q Consensus        75 --~-~~~~v~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~  110 (203)
                        . ..+.|.+++++|++..++.++...                                         ..++|+|+|+.
T Consensus       136 ~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  215 (371)
T d1k8kc_         136 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  215 (371)
T ss_dssp             ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             cccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence              1 235799999999888776553211                                         12568999999


Q ss_pred             EEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         111 IISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       111 l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                      |++++.|++|++||+.+++.+..+..+..                       .+..+.|+|++++|++|+ |+.+++|..
T Consensus       216 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------------------~v~s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         216 VAWVSHDSTVCLADADKKMAVATLASETL-----------------------PLLAVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             EEEEETTTEEEEEEGGGTTEEEEEECSSC-----------------------CEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             ccccccCCcceEEeeecccceeeeecccc-----------------------cceeeeecCCCCEEEEEc-CCceEEEEe
Confidence            99999999999999998888777665431                       123455778887777655 777777654


Q ss_pred             C
Q psy8891         191 N  191 (203)
Q Consensus       191 ~  191 (203)
                      .
T Consensus       272 ~  272 (371)
T d1k8kc_         272 D  272 (371)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.7e-21  Score=139.99  Aligned_cols=193  Identities=23%  Similarity=0.270  Sum_probs=118.1

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEE
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITS   82 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~   82 (203)
                      ++++|+++|+|||.|++||+||+.+.+..... .+...+.++.+++++|+||+.|++|++|++..+..............
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~   99 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL   99 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccccc
Confidence            36789999999999999999999987754321 12234556677889999999999999999988876544432211111


Q ss_pred             EEecCCCceEEEecC------------------------CceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc
Q psy8891          83 LDLSKGTETKFAGSS------------------------CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG  138 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~  138 (203)
                       ........++.+..                        ...+....+....+++++.|++|++||+++++++..+..+.
T Consensus       100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~  178 (293)
T d1p22a2         100 -HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK  178 (293)
T ss_dssp             -EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             -cccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcccc
Confidence             11111111111111                        11122334445678899999999999999998887776543


Q ss_pred             -eEEEEEecCCcEEEEeecCeeE---------E-----eeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeee
Q psy8891         139 -KITSLDLSKGKYYFVFAEGFKV---------Q-----CDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEA  197 (203)
Q Consensus       139 -~v~~~~~~~~~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~  197 (203)
                       .+..+...+.........+...         .     .......+.+++.+|++|+.|+.|++||+.++....
T Consensus       179 ~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  252 (293)
T d1p22a2         179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR  252 (293)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred             cccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCcccc
Confidence             3444444432221111111100         0     011234456778888888888888888877655443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=6.9e-22  Score=148.04  Aligned_cols=150  Identities=15%  Similarity=0.310  Sum_probs=108.0

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE----EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee---
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK----FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI---   74 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~---   74 (203)
                      +++|+|++..|++|+.|+.|++||+++.+..    ..+......+.++|++++|++++.|+.|++||+.++......   
T Consensus       141 ~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  220 (299)
T d1nr0a2         141 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW  220 (299)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999999999999999875432    122333455778999999999999999999999877654322   


Q ss_pred             eeC-CeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEE
Q psy8891          75 ELH-GKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFV  153 (203)
Q Consensus        75 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  153 (203)
                      ..| ..|.+++                   |+|++.+|++++.|++|++||++++...........       .      
T Consensus       221 ~~h~~~v~~l~-------------------~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-------~------  268 (299)
T d1nr0a2         221 TFHTAKVACVS-------------------WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH-------A------  268 (299)
T ss_dssp             CCCSSCEEEEE-------------------ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS-------T------
T ss_pred             ccccccccccc-------------------ccccccceEEEcCCCEEEEEECCCCCcceEEEecCC-------C------
Confidence            222 3455544                   556777999999999999999987654322221110       0      


Q ss_pred             eecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         154 FAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                              .......+.+++++|++|+.|++|++||+.
T Consensus       269 --------~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         269 --------MSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             --------TSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             --------CCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence                    001123345678899999999999999973

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=5.9e-22  Score=154.59  Aligned_cols=176  Identities=17%  Similarity=0.316  Sum_probs=116.5

Q ss_pred             CceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---------ecCcCceEEEEeCCCCEEEEecCCCe---EEEEECCCc
Q psy8891           1 MCAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---------AGSSCNDLVTYDGAGTTIISGHFDKK---VRFWDFRAE   68 (203)
Q Consensus         1 ~~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---------~~~~~~~~~~~~~~~~~l~s~~~D~~---i~vwd~~~~   68 (203)
                      +|++|+|++ .|+||+.|++|++||+.+.+...         .+......++|+|++++|++|+.|++   |++||++++
T Consensus       188 ~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g  266 (393)
T d1sq9a_         188 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  266 (393)
T ss_dssp             CEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc
Confidence            478999997 88999999999999998765421         11223455789999999999999974   999999999


Q ss_pred             eEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccce-EE----EE
Q psy8891          69 EKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK-IT----SL  143 (203)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~-v~----~~  143 (203)
                      +.+..+.............     ..+......+.|+|++++|+|++.|++|++||+++++++.++..|.. |.    .+
T Consensus       267 ~~~~~l~~~~~~~~~~~~~-----~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~  341 (393)
T d1sq9a_         267 ERIGSLSVPTHSSQASLGE-----FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL  341 (393)
T ss_dssp             CEEEEECBC--------CC-----BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred             eeeeeeccccccccceeee-----ecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEE
Confidence            8877765321110000000     00111223456778888999999999999999999999999877632 22    12


Q ss_pred             EecCCcEEEEeecCeeEEeeeEEEEEEc----------CCCEEEEecCCCcEEEEe
Q psy8891         144 DLSKGKYYFVFAEGFKVQCDFTRAVFVV----------DDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~s~s~d~~v~~wd  189 (203)
                      .+++....+...       ....+.+.+          .++.|++++.|+.||+|.
T Consensus       342 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         342 AVDEHGDSLAEP-------GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             CBCTTSCBCSSC-------CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EECCCCCEEEEc-------ccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            233322111100       111222322          235799999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.5e-20  Score=141.03  Aligned_cols=192  Identities=20%  Similarity=0.313  Sum_probs=114.5

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC--
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG--   78 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--   78 (203)
                      ++++++++|+|||.|++|++||+.+++...  .+ ......++++++ +.|+||+.|++|++|++...+.........  
T Consensus        18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~   96 (355)
T d1nexb2          18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNST   96 (355)
T ss_dssp             EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccc
Confidence            356688999999999999999998876532  22 233445677774 699999999999999998887654433221  


Q ss_pred             -eEEEEEecCCCceEEEecCCce--------------------------------------------EEEEcCCCCEEEE
Q psy8891          79 -KITSLDLSKGTETKFAGSSCND--------------------------------------------LVTYDGAGTTIIS  113 (203)
Q Consensus        79 -~v~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~l~s  113 (203)
                       ........++...++.+.....                                            +..+.+++..+++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  176 (355)
T d1nexb2          97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS  176 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             ccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeee
Confidence             1222223333333332222221                                            1233445677778


Q ss_pred             eeCCCeEEEEECCCCceEEEEecc-ceEEEEEecCCcEEEEeec--Cee-E--------Eee-----eEEEEEEcCCCEE
Q psy8891         114 GHFDKKVRFWDFRAEEKVRDIELH-GKITSLDLSKGKYYFVFAE--GFK-V--------QCD-----FTRAVFVVDDDYV  176 (203)
Q Consensus       114 ~s~d~~i~iWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~--~~~-~--------~~~-----~~~~~~~~~~~~l  176 (203)
                      +..|+.|++||+++++.+.....+ ..+....+++....+....  +.. +        ...     -.-..+.+++++|
T Consensus       177 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l  256 (355)
T d1nexb2         177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFL  256 (355)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEE
T ss_pred             ecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccccee
Confidence            888888888888777666555433 2344444444333222211  100 0        000     0113355677788


Q ss_pred             EEecCCCcEEEEeCCCceee
Q psy8891         177 AVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       177 ~s~s~d~~v~~wd~~~~~~~  196 (203)
                      ++|+.|++|++||+++++..
T Consensus       257 ~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         257 VSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             EEECTTSEEEEEETTTCCEE
T ss_pred             eeeeccccccccccccccee
Confidence            88888888888888766544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.8e-20  Score=140.15  Aligned_cols=154  Identities=20%  Similarity=0.292  Sum_probs=96.9

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEE
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITS   82 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~   82 (203)
                      .+++++..+++|+.|++|++||++..+..... .+...+.++.+++++|++|+.|+.|++||+...+....+..+..   
T Consensus       182 ~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~---  258 (342)
T d2ovrb2         182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK---  258 (342)
T ss_dssp             EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTS---
T ss_pred             cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccce---
Confidence            34567777777777777777777765543221 11122233444556777777777777777776665544432110   


Q ss_pred             EEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEe
Q psy8891          83 LDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQC  162 (203)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  162 (203)
                                    ....+..+.+++.++++++.|++|++||+++++.++++.....                  .....
T Consensus       259 --------------~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~------------------~~~~~  306 (342)
T d2ovrb2         259 --------------HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES------------------GGSGG  306 (342)
T ss_dssp             --------------CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTT------------------GGGTC
T ss_pred             --------------eeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccC------------------CCCCC
Confidence                          0011223334556899999999999999999998877643110                  00011


Q ss_pred             eeEEEEEEcCCCEEEEecCCCc----EEEEeCCC
Q psy8891         163 DFTRAVFVVDDDYVAVGSIDGN----IYVWDCNT  192 (203)
Q Consensus       163 ~~~~~~~~~~~~~l~s~s~d~~----v~~wd~~~  192 (203)
                      .+..+.++|++.+|++|+.||+    |++||.+.
T Consensus       307 ~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            2345566778889999999986    99999873

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3e-20  Score=141.48  Aligned_cols=182  Identities=14%  Similarity=0.163  Sum_probs=111.0

Q ss_pred             ceEEcCCCCEEEEEeCCCc-EEEEeCCCCC---e-EEecC--cCceEEEEeC--CCCEEEEecCCCeEEEEECCCceEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRT-LKIWDLRSTE---T-KFAGS--SCNDLVTYDG--AGTTIISGHFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~-v~lwdl~~~~---~-~~~~~--~~~~~~~~~~--~~~~l~s~~~D~~i~vwd~~~~~~~~   72 (203)
                      +++|+|++..|+.++.+.. |+.||....+   . .+.++  .....++|+|  ++++|+||+.||+|+|||+..++...
T Consensus        22 ~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~  101 (325)
T d1pgua1          22 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN  101 (325)
T ss_dssp             CCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCccee
Confidence            6789999999998876543 6777764422   1 22222  2345678876  56799999999999999997654332


Q ss_pred             eee---------eCCeEEEEEecCCCceEEEecCC-------------------------ceEEEEcCCCC-EEEEeeCC
Q psy8891          73 DIE---------LHGKITSLDLSKGTETKFAGSSC-------------------------NDLVTYDGAGT-TIISGHFD  117 (203)
Q Consensus        73 ~~~---------~~~~v~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~-~l~s~s~d  117 (203)
                      .+.         ..++|.++++++++..++.....                         ...+.|+|++. .+++++.|
T Consensus       102 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d  181 (325)
T d1pgua1         102 SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD  181 (325)
T ss_dssp             EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             eeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecc
Confidence            221         12456666666655443322100                         01133444443 24445555


Q ss_pred             CeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcC-CCEEEEecCCCcEEEEeCCCceee
Q psy8891         118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVD-DDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       118 ~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      +.|++||....+.........                    .....+..+.|+|+ +.+|++|+.|+.|++||.++++++
T Consensus       182 ~~v~~~d~~~~~~~~~~~~~~--------------------~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         182 GSVVFYQGPPFKFSASDRTHH--------------------KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             TEEEEEETTTBEEEEEECSSS--------------------CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             cccccccccccccceeccccc--------------------CCCCccEEeeeccccceeccccccccceeeeeecccccc
Confidence            555555554433222221110                    00112455678886 688999999999999999999999


Q ss_pred             eeeccCC
Q psy8891         197 AVLKDMH  203 (203)
Q Consensus       197 ~~~~~~~  203 (203)
                      +++++|+
T Consensus       242 ~~l~~~~  248 (325)
T d1pgua1         242 KYIEDDQ  248 (325)
T ss_dssp             EECCBTT
T ss_pred             ccccccc
Confidence            9998763

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=2.5e-19  Score=136.46  Aligned_cols=128  Identities=13%  Similarity=0.091  Sum_probs=97.6

Q ss_pred             ceEEcC-CCCEEEEEeCCCcEEEEeCCCCCeEEe-cCcCceEEEEeCCCCEEEEecCCC--eEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLG-DPTKVVSGSCDRTLKIWDLRSTETKFA-GSSCNDLVTYDGAGTTIISGHFDK--KVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~-~~~~l~t~s~D~~v~lwdl~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D~--~i~vwd~~~~~~~~~~~~~   77 (203)
                      .-.||| ||+++++++. +.|++||+.++..... +......+.|+|+++.|++++.|.  .|++||++.++........
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~   85 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL   85 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCC
Confidence            347999 9999999875 7999999988665432 233345678999999988776553  8999999998877666666


Q ss_pred             CeEEEEEecCCCceEEEecCCce-----------------------EEEEcCCCCEEEEee----------CCCeEEEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSCND-----------------------LVTYDGAGTTIISGH----------FDKKVRFWD  124 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~s~s----------~d~~i~iWd  124 (203)
                      +.+..++++|++..++.+.....                       .+.|+|+|++|+.+.          .++.+++||
T Consensus        86 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d  165 (360)
T d1k32a3          86 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  165 (360)
T ss_dssp             CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             ceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence            88999999999988776544332                       256889999998543          456799999


Q ss_pred             CCCCce
Q psy8891         125 FRAEEK  130 (203)
Q Consensus       125 ~~~~~~  130 (203)
                      +.+++.
T Consensus       166 ~~~~~~  171 (360)
T d1k32a3         166 MEGRKI  171 (360)
T ss_dssp             TTTTEE
T ss_pred             cccCce
Confidence            987654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=3.9e-19  Score=132.17  Aligned_cols=156  Identities=13%  Similarity=0.238  Sum_probs=110.1

Q ss_pred             ceEEcCCCCEEEEEeCCC-cEEEEeCCCCCeEEe----cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEe-ee
Q psy8891           2 CAKFLGDPTKVVSGSCDR-TLKIWDLRSTETKFA----GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD-IE   75 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~-~v~lwdl~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~-~~   75 (203)
                      +.++++++..++.++.|+ .+++|++...+....    .......+.++|++.+|++|+.|+.|++||+..++.... +.
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  202 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA  202 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccc
Confidence            356778888888887775 799999975433221    122245578999999999999999999999998876533 33


Q ss_pred             e-CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEeccceEEEEEecCCcEEEE
Q psy8891          76 L-HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE-EKVRDIELHGKITSLDLSKGKYYFV  153 (203)
Q Consensus        76 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~  153 (203)
                      . .+.|.+++++|.....         ..+.+++.++++++.|++|++||++++ +.+..+..|..              
T Consensus       203 ~h~~~v~~~~~~p~~~~~---------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~--------------  259 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGA---------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD--------------  259 (287)
T ss_dssp             CCSSCEEEEEECCCC---------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT--------------
T ss_pred             ccccccceeeeccccccc---------ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC--------------
Confidence            3 3679999999866532         234567789999999999999999764 33433333211              


Q ss_pred             eecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeC
Q psy8891         154 FAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDC  190 (203)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~  190 (203)
                               .+..+.++|++ .|+|++.|++|++||+
T Consensus       260 ---------~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         260 ---------GVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ---------CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ---------CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                     23345566664 6899999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.5e-18  Score=131.17  Aligned_cols=150  Identities=22%  Similarity=0.371  Sum_probs=108.3

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC-Ce
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH-GK   79 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~-~~   79 (203)
                      .+.+++..+++++.|+.|++||+.+.+....   .........++++++.+++++.|++|++||++++..+..+..| +.
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~  245 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL  245 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccc
Confidence            3567889999999999999999988664322   1222334567899999999999999999999999888777655 33


Q ss_pred             EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCee
Q psy8891          80 ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFK  159 (203)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  159 (203)
                      |.+++++                     ++.|++++.|++|++||+++.......... .+.                  
T Consensus       246 v~~~~~~---------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~------------------  285 (355)
T d1nexb2         246 VGLLRLS---------------------DKFLVSAAADGSIRGWDANDYSRKFSYHHT-NLS------------------  285 (355)
T ss_dssp             CCEEEEC---------------------SSEEEEECTTSEEEEEETTTCCEEEEEECT-TCC------------------
T ss_pred             ccccccc---------------------cceeeeeecccccccccccccceecccccC-Cce------------------
Confidence            4444432                     358999999999999999876543222110 010                  


Q ss_pred             EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy8891         160 VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVL  199 (203)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~  199 (203)
                           ....+.+++.+|++| .|++|++||+++|++++..
T Consensus       286 -----~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~  319 (355)
T d1nexb2         286 -----AITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN  319 (355)
T ss_dssp             -----CCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSC
T ss_pred             -----EEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEE
Confidence                 112345666766665 5899999999999998653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=1.6e-16  Score=117.99  Aligned_cols=199  Identities=15%  Similarity=0.150  Sum_probs=141.5

Q ss_pred             ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCE-EEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTT-IISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~-l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      .++|+|||++| ++++.+++|++||+.+.+...  ........+.+.+++.. ++++..++.+++||..+++....+..+
T Consensus        36 ~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (301)
T d1l0qa2          36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG  115 (301)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeeeecccc
Confidence            47899999987 577889999999999876532  22222344667888874 556678889999999999988888888


Q ss_pred             CeEEEEEecCCCceEEEecC-Cc----------------------eEEEEcCCCCEEEEeeCC-CeEEEEECCCCceEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSS-CN----------------------DLVTYDGAGTTIISGHFD-KKVRFWDFRAEEKVRD  133 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~-~~----------------------~~~~~~~~~~~l~s~s~d-~~i~iWd~~~~~~~~~  133 (203)
                      .....+.+++++..++.... ..                      ..+.+++++..+++++.+ +.+.+|+....+....
T Consensus       116 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeec
Confidence            88888999998877654321 11                      134678888888777765 5777888877777666


Q ss_pred             EeccceEEEEEecCCcE-EEEee-c-------------Cee-----EEeeeEEEEEEcCCCEE-EEecCCCcEEEEeCCC
Q psy8891         134 IELHGKITSLDLSKGKY-YFVFA-E-------------GFK-----VQCDFTRAVFVVDDDYV-AVGSIDGNIYVWDCNT  192 (203)
Q Consensus       134 ~~~~~~v~~~~~~~~~~-~~~~~-~-------------~~~-----~~~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~~  192 (203)
                      ......+..+.++++.. .++.. .             +..     .......++++||+++| ++++.|+.|++||+++
T Consensus       196 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            66666666666654422 22211 0             000     01134567899999976 6788899999999999


Q ss_pred             ceeeeeec
Q psy8891         193 EQVEAVLK  200 (203)
Q Consensus       193 ~~~~~~~~  200 (203)
                      ++++++++
T Consensus       276 ~~~~~~~~  283 (301)
T d1l0qa2         276 NTITATMA  283 (301)
T ss_dssp             TEEEEEEE
T ss_pred             CeEEEEEe
Confidence            99999886

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.78  E-value=2.2e-18  Score=135.67  Aligned_cols=72  Identities=10%  Similarity=0.028  Sum_probs=52.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE----e-cCcCceE---EEEeCCCCEE-EEecCCCeEEEEECCCceEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF----A-GSSCNDL---VTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~----~-~~~~~~~---~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~   72 (203)
                      .++|||||++|++++.|++|++||+.+.+...    . ...+...   +.++|||++| +++..++++++||...++...
T Consensus        66 ~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~  145 (426)
T d1hzua2          66 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ  145 (426)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeE
Confidence            47899999999999999999999998865321    1 1112122   2346789976 555689999999998876654


Q ss_pred             e
Q psy8891          73 D   73 (203)
Q Consensus        73 ~   73 (203)
                      .
T Consensus       146 ~  146 (426)
T d1hzua2         146 I  146 (426)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=6.4e-17  Score=121.70  Aligned_cols=199  Identities=13%  Similarity=0.042  Sum_probs=128.2

Q ss_pred             ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeEEe--cC------cCceEEEEeCCCCEEEEec------------CCCeE
Q psy8891           2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETKFA--GS------SCNDLVTYDGAGTTIISGH------------FDKKV   60 (203)
Q Consensus         2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~~~--~~------~~~~~~~~~~~~~~l~s~~------------~D~~i   60 (203)
                      +++|+|||+++ ++++.|++|++||+.+++....  ..      .....+.++|+++.++.++            .+..+
T Consensus        38 ~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~  117 (337)
T d1pbyb_          38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV  117 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEE
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccce
Confidence            57899999987 5778899999999998775321  11      1112367889999888776            46789


Q ss_pred             EEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEE---------E-----------EcCCCCE----------
Q psy8891          61 RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLV---------T-----------YDGAGTT----------  110 (203)
Q Consensus        61 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------~-----------~~~~~~~----------  110 (203)
                      .+||..+++....+.....+..+++++++..++.+.....++         .           +.+++..          
T Consensus       118 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (337)
T d1pbyb_         118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV  197 (337)
T ss_dssp             EEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTE
T ss_pred             eeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccce
Confidence            999999999888887777778888888888776554322111         0           1111110          


Q ss_pred             --------------EEEeeCCCeEEEEECCCCceEEE-Eec-cceEEEEEecCCcEEEEeecC----------ee-----
Q psy8891         111 --------------IISGHFDKKVRFWDFRAEEKVRD-IEL-HGKITSLDLSKGKYYFVFAEG----------FK-----  159 (203)
Q Consensus       111 --------------l~s~s~d~~i~iWd~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~----------~~-----  159 (203)
                                    ....+.++.+.+||..++..... +.. ...+..+.+.++..++....+          ..     
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  277 (337)
T d1pbyb_         198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP  277 (337)
T ss_dssp             EEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEE
T ss_pred             eeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEEEEECCCCcEEEEEc
Confidence                          11112234577777776654332 111 122444444444332221111          00     


Q ss_pred             EEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         160 VQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ....+..+.|+|||++|++++.|++|++||..+++.+++++
T Consensus       278 ~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            01123467789999999999999999999999999999886

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.4e-16  Score=113.04  Aligned_cols=181  Identities=19%  Similarity=0.349  Sum_probs=103.6

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE---Eeeee-CC
Q psy8891           4 KFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV---RDIEL-HG   78 (203)
Q Consensus         4 ~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~---~~~~~-~~   78 (203)
                      +++++++.|+|||.|++|++|++......... ..........+....++++..++.+++||.......   ..+.. ..
T Consensus        60 ~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (293)
T d1p22a2          60 CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  139 (293)
T ss_dssp             EEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred             eeecccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccc
Confidence            34568899999999999999999876543321 111222334455667778888888888887654421   11111 12


Q ss_pred             eEEEEEecCCCceEEEecC---------------------CceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc
Q psy8891          79 KITSLDLSKGTETKFAGSS---------------------CNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      .+....+.+..  ...++.                     ...+..+.+++..+++++.|++|++||+++.+.+.....+
T Consensus       140 ~v~~~~~~~~~--~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  217 (293)
T d1p22a2         140 AVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH  217 (293)
T ss_dssp             CEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             ccccceecccc--cccccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeeccc
Confidence            33333322211  111111                     1112233445678999999999999999988887766554


Q ss_pred             ce-EEEEEecCCcEEEEee-cCee-------------------------EEeeeEEEEEEcCCCEEEEecCCCcEEEEe
Q psy8891         138 GK-ITSLDLSKGKYYFVFA-EGFK-------------------------VQCDFTRAVFVVDDDYVAVGSIDGNIYVWD  189 (203)
Q Consensus       138 ~~-v~~~~~~~~~~~~~~~-~~~~-------------------------~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd  189 (203)
                      .. +..+.... ..++... .+..                         +...+..+.  .++.+|+|||.|++|++||
T Consensus       218 ~~~v~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~--~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         218 EELVRCIRFDN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ--FDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SSCEEEEECCS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE--ECSSCEEECCSSSEEEEEC
T ss_pred             ceeeeeccccc-eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEE--EcCCEEEEEecCCEEEEeC
Confidence            33 33333222 1111111 1100                         001123333  4778999999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.3e-16  Score=116.93  Aligned_cols=88  Identities=19%  Similarity=0.331  Sum_probs=62.9

Q ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE-Eecc-ceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEE
Q psy8891         101 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRD-IELH-GKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAV  178 (203)
Q Consensus       101 ~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  178 (203)
                      .+.|+|++.+|++++.|+.|++||+.+++.... +..| ..+.++++++.....              ..+.+++.+|++
T Consensus       167 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~--------------~~~~~~~~~l~s  232 (287)
T d1pgua2         167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA--------------NEEEIEEDLVAT  232 (287)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--------------------CCSCCEEEE
T ss_pred             EEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccc--------------ccccCCCCeeEe
Confidence            356777888999999999999999998765433 2333 457777776644321              223457889999


Q ss_pred             ecCCCcEEEEeCCC-ceeeeeeccC
Q psy8891         179 GSIDGNIYVWDCNT-EQVEAVLKDM  202 (203)
Q Consensus       179 ~s~d~~v~~wd~~~-~~~~~~~~~~  202 (203)
                      |+.|++|++||+++ +++++.+.+|
T Consensus       233 gs~D~~i~iw~~~~~~~~~~~~~~h  257 (287)
T d1pgua2         233 GSLDTNIFIYSVKRPMKIIKALNAH  257 (287)
T ss_dssp             EETTSCEEEEESSCTTCCEEETTSS
T ss_pred             ecCCCeEEEEECCCCCeEEEEeCCC
Confidence            99999999999876 5666666655

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.74  E-value=1.5e-16  Score=120.08  Aligned_cols=92  Identities=10%  Similarity=0.048  Sum_probs=68.6

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE--ec--CcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKF--AG--SSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~--~~--~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      .+|++++++|++++.|++|.+||+.+.+...  ..  ......+.++||++++ ++++.++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4789999999999999999999999876532  11  2223357889999976 66678999999999999887665432


Q ss_pred             C-------eEEEEEecCCCceEEE
Q psy8891          78 G-------KITSLDLSKGTETKFA   94 (203)
Q Consensus        78 ~-------~v~~~~~~~~~~~~~~   94 (203)
                      .       .+..+++++++..++.
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v  105 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYA  105 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEE
Confidence            1       2345677777766543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.73  E-value=6.6e-15  Score=109.02  Aligned_cols=189  Identities=10%  Similarity=0.090  Sum_probs=134.5

Q ss_pred             EEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCC
Q psy8891          12 VVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKG   88 (203)
Q Consensus        12 l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~   88 (203)
                      .++++.|++|++||+.+.+...  ........++++|++++| ++++.++.|++||+.+++.+..+..+..+..+.+.++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~   84 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD   84 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccc
Confidence            3578899999999999876432  222222347889999977 5778899999999999999988888777888888888


Q ss_pred             CceEEEecCC-----------------------ceEEEEcCCCCEEE-EeeCCCeEEEEECCCCceEEEEeccceEEEEE
Q psy8891          89 TETKFAGSSC-----------------------NDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVRDIELHGKITSLD  144 (203)
Q Consensus        89 ~~~~~~~~~~-----------------------~~~~~~~~~~~~l~-s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~  144 (203)
                      +..++.....                       .....++|++..++ ++..++.+.+|+..++.....+.....+..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIA  164 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEE
T ss_pred             cccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEE
Confidence            7765543211                       12356788888765 55568899999999998888887777777777


Q ss_pred             ecCCcEEE-EeecCe-----------eE------EeeeEEEEEEcCCCEEEEec---CCCcEEEEeCCCceeeeeec
Q psy8891         145 LSKGKYYF-VFAEGF-----------KV------QCDFTRAVFVVDDDYVAVGS---IDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       145 ~~~~~~~~-~~~~~~-----------~~------~~~~~~~~~~~~~~~l~s~s---~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ++++...+ ....+.           ..      ........+.+++..++.++   .++.|++||+.+++++.+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~  241 (301)
T d1l0qa2         165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP  241 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred             eeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc
Confidence            76654332 222110           00      01223456788888876554   45689999999999988775

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.4e-15  Score=119.97  Aligned_cols=176  Identities=15%  Similarity=0.090  Sum_probs=117.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE--EEeeeeCCeEEEEEe
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK--VRDIELHGKITSLDL   85 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~--~~~~~~~~~v~~~~~   85 (203)
                      -++++.+.|++|++||..+.+...  ..+.....++++|||+++++++.|+++++||+.+++.  +.++..-.....+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            346899999999999999877542  2333345578999999999999999999999987663  333332222333333


Q ss_pred             cCCCceEEEecCCceEEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEecc------------ceEEEEEecCCcEEE
Q psy8891          86 SKGTETKFAGSSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELH------------GKITSLDLSKGKYYF  152 (203)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s~d~~i~iWd~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~  152 (203)
                      ++               .|+|||++| ++++.+++|++||..+++++..+..+            +....+..+++...+
T Consensus       113 s~---------------~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         113 SK---------------MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             CC---------------STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             ec---------------ccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE
Confidence            32               357788875 67888999999999999988766532            223334444432222


Q ss_pred             -Eeec--C----------e--eE-----EeeeEEEEEEcCCCEEEEecC-CCcEEEEeCCCceeeeeec
Q psy8891         153 -VFAE--G----------F--KV-----QCDFTRAVFVVDDDYVAVGSI-DGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       153 -~~~~--~----------~--~~-----~~~~~~~~~~~~~~~l~s~s~-d~~v~~wd~~~~~~~~~~~  200 (203)
                       +...  +          .  ..     ........++|+++++++++. ++.+.++|..+++.+..+.
T Consensus       178 ~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         178 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence             1110  0          0  00     012235678999998777665 6678999999988887664

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.9e-17  Score=123.02  Aligned_cols=166  Identities=11%  Similarity=0.146  Sum_probs=107.1

Q ss_pred             ceEEcCCC-CEEEEEeCCCcEEEEeCCCCCeEEec----CcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEee--
Q psy8891           2 CAKFLGDP-TKVVSGSCDRTLKIWDLRSTETKFAG----SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI--   74 (203)
Q Consensus         2 ~~~~~~~~-~~l~t~s~D~~v~lwdl~~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~--   74 (203)
                      |++|+|++ ..|+||+.|++|++|++.........    ..........+++..+++++.|+++++||++.+......  
T Consensus        61 ~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~  140 (342)
T d1yfqa_          61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             EEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeec
Confidence            68899865 57999999999999999875432211    111233445567789999999999999997533211000  


Q ss_pred             ----------------e----------eCCeEEE------------------------EEecC-CCceEEEecCC-----
Q psy8891          75 ----------------E----------LHGKITS------------------------LDLSK-GTETKFAGSSC-----   98 (203)
Q Consensus        75 ----------------~----------~~~~v~~------------------------~~~~~-~~~~~~~~~~~-----   98 (203)
                                      .          .++.+..                        ....+ +...+..+...     
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v  220 (342)
T d1yfqa_         141 NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV  220 (342)
T ss_dssp             ESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred             ccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEE
Confidence                            0          0111111                        11111 11111111111     


Q ss_pred             ---------------------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEe
Q psy8891          99 ---------------------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDL  145 (203)
Q Consensus        99 ---------------------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~  145 (203)
                                                       ...+.|+|++++|+||+.||+|++||+++++.++.+......     
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~-----  295 (342)
T d1yfqa_         221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-----  295 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-----
T ss_pred             EEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCC-----
Confidence                                             123679999999999999999999999998877665432221     


Q ss_pred             cCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         146 SKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                                         ..+.++|++++|++|+.|.++++|...
T Consensus       296 -------------------~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         296 -------------------SVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             -------------------EEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             -------------------EEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence                               124467889999999999999888753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.68  E-value=1.7e-14  Score=113.12  Aligned_cols=175  Identities=12%  Similarity=0.108  Sum_probs=114.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE--eeeeCCeEEEEEec
Q psy8891          11 KVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR--DIELHGKITSLDLS   86 (203)
Q Consensus        11 ~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~--~~~~~~~v~~~~~~   86 (203)
                      ++++++.|++|++||+.+.+..  +..+.....++++|||++|++++.|+++++||+.+++...  ++........+.++
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s  113 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS  113 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEe
Confidence            5689999999999999987753  2233334557899999999999999999999998876543  33322223333333


Q ss_pred             CCCceEEEecCCceEEEEcCCCCEEE-EeeCCCeEEEEECCCCceEEEEecc------------ceEEEEEecCCcEEEE
Q psy8891          87 KGTETKFAGSSCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKVRDIELH------------GKITSLDLSKGKYYFV  153 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~l~-s~s~d~~i~iWd~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~  153 (203)
                      +               .|+|||++++ ++..++++++||..++++......+            +....+..+++...+.
T Consensus       114 ~---------------~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~  178 (426)
T d1hzua2         114 K---------------FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  178 (426)
T ss_dssp             C---------------STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             e---------------eecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEE
Confidence            2               3567888764 4457899999999998877665432            1222333333222211


Q ss_pred             e-ecC--e------------e-----EEeeeEEEEEEcCCCEEEEec-CCCcEEEEeCCCceeeeeec
Q psy8891         154 F-AEG--F------------K-----VQCDFTRAVFVVDDDYVAVGS-IDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       154 ~-~~~--~------------~-----~~~~~~~~~~~~~~~~l~s~s-~d~~v~~wd~~~~~~~~~~~  200 (203)
                      . ..+  .            .     .........+.|++++++.+. .+..+.+++..+++++..+.
T Consensus       179 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         179 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  246 (426)
T ss_dssp             EEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred             EecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence            1 110  0            0     011223567889999877765 56679999999999988764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=6.5e-14  Score=104.93  Aligned_cols=153  Identities=11%  Similarity=0.028  Sum_probs=104.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCeEEe--c---CcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEEEeeeeCCeEEEE
Q psy8891          10 TKVVSGSCDRTLKIWDLRSTETKFA--G---SSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKVRDIELHGKITSL   83 (203)
Q Consensus        10 ~~l~t~s~D~~v~lwdl~~~~~~~~--~---~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~   83 (203)
                      ++++|++.|++|++||+.+.+....  .   ......++++||+++| ++++.++.|.+||+.+++.+..+..+......
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            4789999999999999998765321  1   1112347889999987 57788999999999999887776544221100


Q ss_pred             EecCCCceEEEecCCceEEEEcCCCCEEEEee------------CCCeEEEEECCCCceEEEEeccceEEEEEecCCcEE
Q psy8891          84 DLSKGTETKFAGSSCNDLVTYDGAGTTIISGH------------FDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYY  151 (203)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s------------~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~  151 (203)
                      .             ....+.|+|+++.++.+.            .+..+.+||..+++....+.....+.          
T Consensus        82 ~-------------~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------  138 (337)
T d1pbyb_          82 K-------------SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT----------  138 (337)
T ss_dssp             E-------------CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC----------
T ss_pred             c-------------ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCce----------
Confidence            0             000134555555555554            46788889988887766665443322          


Q ss_pred             EEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         152 FVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                                    .+.++|+++++++++.  .+.+||..++++..+++.
T Consensus       139 --------------~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~  172 (337)
T d1pbyb_         139 --------------MLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPI  172 (337)
T ss_dssp             --------------CEEECTTSSCEEEESS--SEEEEETTTTEEEEEECS
T ss_pred             --------------EEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeec
Confidence                          3456689999988864  477899999998887753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=6.4e-13  Score=100.58  Aligned_cols=200  Identities=10%  Similarity=0.102  Sum_probs=123.1

Q ss_pred             ceEEcCCCCEEEEE----------eCCCcEEEEeCCCCCeEEe---c-------CcCceEEEEeCCCCEEEEe--cCCCe
Q psy8891           2 CAKFLGDPTKVVSG----------SCDRTLKIWDLRSTETKFA---G-------SSCNDLVTYDGAGTTIISG--HFDKK   59 (203)
Q Consensus         2 ~~~~~~~~~~l~t~----------s~D~~v~lwdl~~~~~~~~---~-------~~~~~~~~~~~~~~~l~s~--~~D~~   59 (203)
                      .++|+|||+.|+.+          +.|+.|++||+.+.+....   .       ......+.++++++.++.+  +.+..
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  130 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  130 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence            46899999988764          4588999999998664321   0       0111236788999877665  45678


Q ss_pred             EEEEECCCceEEEeeeeCCe--------EEEEEecCCCceEEEecCC-c------------------eEEEEcCCCCEEE
Q psy8891          60 VRFWDFRAEEKVRDIELHGK--------ITSLDLSKGTETKFAGSSC-N------------------DLVTYDGAGTTII  112 (203)
Q Consensus        60 i~vwd~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~l~  112 (203)
                      +.+||..+++.+..+.....        ...+.+.+++..++..... .                  ....+.+++..++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (355)
T d2bbkh_         131 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV  210 (355)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             eeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEE
Confidence            99999999988776654432        2234566665554432111 0                  1124566777888


Q ss_pred             EeeCCCeEEEEECCCCceEE--EEe------------cc-ceEEEEEecCCcE------------------EEEe--ecC
Q psy8891         113 SGHFDKKVRFWDFRAEEKVR--DIE------------LH-GKITSLDLSKGKY------------------YFVF--AEG  157 (203)
Q Consensus       113 s~s~d~~i~iWd~~~~~~~~--~~~------------~~-~~v~~~~~~~~~~------------------~~~~--~~~  157 (203)
                      .++.++++.+|++..++...  ...            .. .....+.......                  +.+.  ..+
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~  290 (355)
T d2bbkh_         211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  290 (355)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC
Confidence            99999999999998765321  000            00 0111111111111                  1111  001


Q ss_pred             -----eeEEeeeEEEEEEcCCC--EEEEecCCCcEEEEeCCCceeeeeecc
Q psy8891         158 -----FKVQCDFTRAVFVVDDD--YVAVGSIDGNIYVWDCNTEQVEAVLKD  201 (203)
Q Consensus       158 -----~~~~~~~~~~~~~~~~~--~l~s~s~d~~v~~wd~~~~~~~~~~~~  201 (203)
                           .........+.++||++  ++++++.|+.|++||+.+++.++++++
T Consensus       291 ~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         291 ERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             CEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             cEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeC
Confidence                 11122345677899987  467788899999999999999999874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.54  E-value=1.4e-13  Score=104.17  Aligned_cols=199  Identities=14%  Similarity=0.069  Sum_probs=137.7

Q ss_pred             ceEEcCCCCEEEEEeCCC--cEEEEeCCCCCeEEe--cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVSGSCDR--TLKIWDLRSTETKFA--GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~--~v~lwdl~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +++|+|||+.|++++.|.  .|++||+++++....  +......+.|+|++++|++++.++.+++|++..++....+..+
T Consensus        47 ~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1k32a3          47 YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  126 (360)
T ss_dssp             EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecc
Confidence            689999999998877664  799999998765432  2233455789999999999999999999999998877666654


Q ss_pred             -CeEEEEEecCCCceEEEecC--------------------------------CceEEEEcCCCCEEEEeeCCCeEEEEE
Q psy8891          78 -GKITSLDLSKGTETKFAGSS--------------------------------CNDLVTYDGAGTTIISGHFDKKVRFWD  124 (203)
Q Consensus        78 -~~v~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~l~s~s~d~~i~iWd  124 (203)
                       ..+..++++|++..++....                                ......|+|+|+.|++++.|+.+++||
T Consensus       127 ~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccc
Confidence             45778889988877653210                                011257899999999999999999999


Q ss_pred             CCCCce-------EEEEecc-------------------------------------ceEEEEEecCCcEEEEee-----
Q psy8891         125 FRAEEK-------VRDIELH-------------------------------------GKITSLDLSKGKYYFVFA-----  155 (203)
Q Consensus       125 ~~~~~~-------~~~~~~~-------------------------------------~~v~~~~~~~~~~~~~~~-----  155 (203)
                      ......       ...+..+                                     +....+...++....+..     
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (360)
T d1k32a3         207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE  286 (360)
T ss_dssp             SSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCS
T ss_pred             ccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCC
Confidence            754322       1111110                                     001111111111111100     


Q ss_pred             -------------------cC---eeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         156 -------------------EG---FKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       156 -------------------~~---~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                         ..   ..+...+..+.|+|||++|++++.||+|++||+++++.+++++
T Consensus       287 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         287 FAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             HHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred             CeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence                               00   0112345567899999999999999999999999999988875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=3.7e-13  Score=105.86  Aligned_cols=114  Identities=14%  Similarity=0.076  Sum_probs=85.3

Q ss_pred             EEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCc
Q psy8891          50 TIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE  129 (203)
Q Consensus        50 ~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~  129 (203)
                      .+++.+.|++|.|||+++++.+..+..+..+..+                   .|+|||+++++++.|++|++||+.+++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v-------------------~fSpDG~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHIS-------------------RLSASGRYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEE-------------------EECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEE-------------------EECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence            4689999999999999999999888766555554                   456678899999999999999998876


Q ss_pred             eEEE--EeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEE-EEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         130 KVRD--IELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYV-AVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       130 ~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                      ....  +........+.                    ....|+|||++| ++++.+++|++||..+++++++++.+
T Consensus        95 ~~~~~~i~~~~~~~~~~--------------------~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2          95 PTTVAEIKIGSEARSIE--------------------TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             CCEEEEEECCSEEEEEE--------------------ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             ceEEEEEecCCCCCCeE--------------------EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC
Confidence            4332  22211111111                    112356799975 77888999999999999999987653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.50  E-value=1.7e-11  Score=93.38  Aligned_cols=176  Identities=10%  Similarity=0.028  Sum_probs=111.5

Q ss_pred             ceEEcCCCCEE-EEEeCCCcEEEEeCCCCCeEEe---c-----CcC-ceEEEEeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891           2 CAKFLGDPTKV-VSGSCDRTLKIWDLRSTETKFA---G-----SSC-NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         2 ~~~~~~~~~~l-~t~s~D~~v~lwdl~~~~~~~~---~-----~~~-~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      ++.|+|+++.+ ++.+.|+++.+||....+....   .     ... .....+.++ ..++..+.++.+.+|+.......
T Consensus       169 ~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  247 (373)
T d2madh_         169 CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGAT  247 (373)
T ss_pred             eEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC-ceEEEecCCceEEEEEcCCCeEE
Confidence            56789998754 6899999999999987543211   0     011 111233443 35666778999999998877543


Q ss_pred             EeeeeC---CeEEEEEecCCCceEEEecCCc-eEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccceEEEEEecC
Q psy8891          72 RDIELH---GKITSLDLSKGTETKFAGSSCN-DLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSK  147 (203)
Q Consensus        72 ~~~~~~---~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~  147 (203)
                      ......   .......+.+............ .+......+..+++...++++.+||..+++.+..+.....+.      
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~------  321 (373)
T d2madh_         248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVD------  321 (373)
T ss_pred             EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCee------
Confidence            222211   1222233333222222221111 122334455667788888999999999998877766544433      


Q ss_pred             CcEEEEeecCeeEEeeeEEEEEEcCCCE--EEEecCCCcEEEEeCCCceeeeeeccC
Q psy8891         148 GKYYFVFAEGFKVQCDFTRAVFVVDDDY--VAVGSIDGNIYVWDCNTEQVEAVLKDM  202 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~s~s~d~~v~~wd~~~~~~~~~~~~~  202 (203)
                                        .+.|+|||+.  +++++.|++|++||+.+|+.+++++++
T Consensus       322 ------------------~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~  360 (373)
T d2madh_         322 ------------------AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             ------------------EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence                              3446678873  578899999999999999999999753

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=3.5e-12  Score=97.65  Aligned_cols=196  Identities=7%  Similarity=-0.069  Sum_probs=110.6

Q ss_pred             eEEcCCCCEEEEEe----------CCCcEEEEeCCCCCeEEe--c--------CcCceEEEEeCCCCEEEEec-CCCeEE
Q psy8891           3 AKFLGDPTKVVSGS----------CDRTLKIWDLRSTETKFA--G--------SSCNDLVTYDGAGTTIISGH-FDKKVR   61 (203)
Q Consensus         3 ~~~~~~~~~l~t~s----------~D~~v~lwdl~~~~~~~~--~--------~~~~~~~~~~~~~~~l~s~~-~D~~i~   61 (203)
                      ++|+|||+.|+.++          .|++|++||..+.+....  .        ......+.++||+++|+.++ .++.+.
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~  149 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA  149 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEE
Confidence            68999999988754          588899999988664321  1        01112367899999887775 579999


Q ss_pred             EEECCCceEEEeeeeCC--------eEEEEEecCCCceEEEecCC-------------------ceEEEEcCCCCEEEEe
Q psy8891          62 FWDFRAEEKVRDIELHG--------KITSLDLSKGTETKFAGSSC-------------------NDLVTYDGAGTTIISG  114 (203)
Q Consensus        62 vwd~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~s~  114 (203)
                      +||+.+++.+..+..+.        ....+.+++++.........                   .....+.+++..+.+.
T Consensus       150 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         150 GLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             EEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             EEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            99999998877765432        11233445555443321100                   0113345555444433


Q ss_pred             eCCCeEEEEECCCCceEEEE--------------ec-cceEEEEEecCCcEEEE-----------------e--ecCe--
Q psy8891         115 HFDKKVRFWDFRAEEKVRDI--------------EL-HGKITSLDLSKGKYYFV-----------------F--AEGF--  158 (203)
Q Consensus       115 s~d~~i~iWd~~~~~~~~~~--------------~~-~~~v~~~~~~~~~~~~~-----------------~--~~~~--  158 (203)
                        ++.+.+++...+......              .. ..+...+.......+..                 .  ..+.  
T Consensus       230 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~  307 (368)
T d1mdah_         230 --ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS  307 (368)
T ss_dssp             --SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred             --CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe
Confidence              344555554433221100              00 00112222111111111                 0  0111  


Q ss_pred             ---eEEeeeEEEEEEcCCC--EEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         159 ---KVQCDFTRAVFVVDDD--YVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       159 ---~~~~~~~~~~~~~~~~--~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                         .....+..+.++||++  .++++..|+.|++||..+|+.+++++
T Consensus       308 ~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         308 GPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             ECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence               1122344567889987  35677889999999999999999987

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.3e-11  Score=89.94  Aligned_cols=118  Identities=9%  Similarity=0.182  Sum_probs=79.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCC--eE---EecCcCceEEEEeCCCCEEE-EecCCCeEEEEECCCceEE----EeeeeCCeE
Q psy8891          11 KVVSGSCDRTLKIWDLRSTE--TK---FAGSSCNDLVTYDGAGTTII-SGHFDKKVRFWDFRAEEKV----RDIELHGKI   80 (203)
Q Consensus        11 ~l~t~s~D~~v~lwdl~~~~--~~---~~~~~~~~~~~~~~~~~~l~-s~~~D~~i~vwd~~~~~~~----~~~~~~~~v   80 (203)
                      .+++++.|++|++||+....  ..   .........++++||+++|+ ++..|+.|++|++......    ........+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            45788899999999997532  11   22233334578999999885 5556899999999765422    222333456


Q ss_pred             EEEEecCCCceEEEecCCc-eE-------------------------EEEcCCCCEEEEeeCC-CeEEEEECCCC
Q psy8891          81 TSLDLSKGTETKFAGSSCN-DL-------------------------VTYDGAGTTIISGHFD-KKVRFWDFRAE  128 (203)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~-------------------------~~~~~~~~~l~s~s~d-~~i~iWd~~~~  128 (203)
                      ..++++|++..++...... .+                         +.++|+++.++.++.+ ..|.+|+....
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            7789999988877654321 11                         3467888887777654 57888887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.34  E-value=1.9e-10  Score=87.35  Aligned_cols=160  Identities=11%  Similarity=-0.083  Sum_probs=104.0

Q ss_pred             ceEEcCCCCEEEEE-----eCCCcEEEEeCCCCCeEEecC-cCceEEEEeCCCCEEEEec----------CCCeEEEEEC
Q psy8891           2 CAKFLGDPTKVVSG-----SCDRTLKIWDLRSTETKFAGS-SCNDLVTYDGAGTTIISGH----------FDKKVRFWDF   65 (203)
Q Consensus         2 ~~~~~~~~~~l~t~-----s~D~~v~lwdl~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~----------~D~~i~vwd~   65 (203)
                      +++++|||++++..     +.++.|.+||..+++...... .....+.++||+++|+.++          .++.|++||+
T Consensus        25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~  104 (373)
T d2madh_          25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             ccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEEC
Confidence            46789999998754     344679999998877542211 1122367899999988874          4688999999


Q ss_pred             CCceEEEeeeeCCe-EEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEeccceEEE
Q psy8891          66 RAEEKVRDIELHGK-ITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF--DKKVRFWDFRAEEKVRDIELHGKITS  142 (203)
Q Consensus        66 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--d~~i~iWd~~~~~~~~~~~~~~~v~~  142 (203)
                      .+++.+..+..+.. .......+.            -+.|+++++.++...+  ++.+.+|+....+........     
T Consensus       105 ~t~~~~~~~~~~~~~~~~~~~~~~------------~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----  167 (373)
T d2madh_         105 VTFLPIADIELPDAPRFDVGPYSW------------MNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP-----  167 (373)
T ss_pred             CCCcEEEEEecCCcceeEeccCCC------------cEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc-----
Confidence            99988777655432 222212111            2456777776655544  567888887765543332211     


Q ss_pred             EEecCCcEEEEeecCeeEEeeeEEEEEEcCCCE-EEEecCCCcEEEEeCCCceeeeeec
Q psy8891         143 LDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDY-VAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                                            ....+.|+++. +++.+.|+.+.+||...+++.....
T Consensus       168 ----------------------~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         168 ----------------------TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             ----------------------eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence                                  12335566654 5788899999999998888777653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=1.5e-10  Score=87.28  Aligned_cols=181  Identities=12%  Similarity=0.033  Sum_probs=112.7

Q ss_pred             EEcCCCCEEEEE-----eCCCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEe----------cCCCeEEEEECC
Q psy8891           4 KFLGDPTKVVSG-----SCDRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISG----------HFDKKVRFWDFR   66 (203)
Q Consensus         4 ~~~~~~~~l~t~-----s~D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~----------~~D~~i~vwd~~   66 (203)
                      +.+||+++++..     +.+.+|.+||..+++...  .... ...++++||++.|+..          +.|+.|++||+.
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~   86 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV   86 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC-CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence            458999998765     356789999999876432  1111 1247899999977654          458899999999


Q ss_pred             CceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee--CCCeEEEEECCCCceEEEEeccceEEE--
Q psy8891          67 AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH--FDKKVRFWDFRAEEKVRDIELHGKITS--  142 (203)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~i~iWd~~~~~~~~~~~~~~~v~~--  142 (203)
                      +++.+..+..+..-          ....+ .....+.|+++++.++.++  .+..+.+||..+++.+..+..+.....  
T Consensus        87 t~~~~~~~~~~~~~----------~~~~~-~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d2bbkh_          87 TLLPTADIELPDAP----------RFLVG-TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP  155 (355)
T ss_dssp             TCCEEEEEEETTCC----------CCCBS-CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred             CCCEEEEEecCCcc----------eeecC-CCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEee
Confidence            99887665433110          00000 0112356888888877664  467899999999988877765433222  


Q ss_pred             ------EEecCCcEE-EEeecC-e--eE----------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         143 ------LDLSKGKYY-FVFAEG-F--KV----------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       143 ------~~~~~~~~~-~~~~~~-~--~~----------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                            +.++++... ++.... .  ..          ...+....+.+++..++.++.++.+++|+...+++.
T Consensus       156 ~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE
T ss_pred             cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE
Confidence                  223332221 111100 0  00          001122345678888999999999999999877643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.24  E-value=4e-11  Score=89.64  Aligned_cols=121  Identities=7%  Similarity=0.014  Sum_probs=82.8

Q ss_pred             EEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCC--eEEEEEecCCCceEEEecCCceEEEEcCCCCEE-EEeeCCCe
Q psy8891          43 TYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHG--KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTI-ISGHFDKK  119 (203)
Q Consensus        43 ~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s~d~~  119 (203)
                      ++++++++|++++.|++|.|||+.+++.++++..+.  .+..                   +.|+|||+++ ++++.++.
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~-------------------l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGT-------------------AMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCE-------------------EEECTTSSEEEEEETTTTE
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcce-------------------EEECCCCCEEEEEECCCCc
Confidence            356788999999999999999999999888776431  2223                   4566777776 55567899


Q ss_pred             EEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEec------------CCCcEEE
Q psy8891         120 VRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGS------------IDGNIYV  187 (203)
Q Consensus       120 i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s------------~d~~v~~  187 (203)
                      |++||+.+++.+..+..........                 .....+.++||+++++.++            .+..+.+
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~~~-----------------~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~  126 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGEVG-----------------RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV  126 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEE-----------------ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred             EEEEeCccCeeeeeecccccccccC-----------------CceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEE
Confidence            9999999998877665432110000                 0112234556666665543            5788999


Q ss_pred             EeCCCceeeeee
Q psy8891         188 WDCNTEQVEAVL  199 (203)
Q Consensus       188 wd~~~~~~~~~~  199 (203)
                      ||..+++..+.+
T Consensus       127 ~~~~~~~~~~~~  138 (346)
T d1jmxb_         127 FSTADGLEAKPV  138 (346)
T ss_dssp             EEGGGGGGBCCS
T ss_pred             EecccceeeeEE
Confidence            998887766654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=7.9e-09  Score=76.66  Aligned_cols=110  Identities=15%  Similarity=0.227  Sum_probs=68.4

Q ss_pred             EEEEecCCCeEEEEECCCceE---EEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEEC
Q psy8891          50 TIISGHFDKKVRFWDFRAEEK---VRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDF  125 (203)
Q Consensus        50 ~l~s~~~D~~i~vwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~  125 (203)
                      .+++++.|++|+|||+.....   ++.+...+.+..++                   |+|||++|++++ .|+.|++|++
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la-------------------~spDG~~L~v~~~~d~~i~~~~i   66 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMV-------------------VSPDKRYLYVGVRPEFRVLAYRI   66 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEE-------------------ECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEE-------------------EeCCCCEEEEEECCCCeEEEEEE
Confidence            457888999999999976432   33444444555544                   556777775544 5899999999


Q ss_pred             CCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecC-CCcEEEEeCCCceeeee
Q psy8891         126 RAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSI-DGNIYVWDCNTEQVEAV  198 (203)
Q Consensus       126 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-d~~v~~wd~~~~~~~~~  198 (203)
                      .......++..+.     ..               ......+.++||+++|++++. ++.|.+|+.........
T Consensus        67 ~~~~~~~~~~~~~-----~~---------------~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~  120 (333)
T d1ri6a_          67 APDDGALTFAAES-----AL---------------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV  120 (333)
T ss_dssp             CTTTCCEEEEEEE-----EC---------------SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred             eCCCCcEEEeeec-----cc---------------CCCceEEEEcCCCCEEeecccCCCceeeeccccccceec
Confidence            7654332221110     00               001123557789998888775 77888888776554443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.81  E-value=2.3e-08  Score=75.92  Aligned_cols=122  Identities=10%  Similarity=-0.055  Sum_probs=78.5

Q ss_pred             EEcCCCCE---EEEEeCCCcEE--EEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEe----------cCCCeEEEEECC
Q psy8891           4 KFLGDPTK---VVSGSCDRTLK--IWDLRSTETKF--AGSSCNDLVTYDGAGTTIISG----------HFDKKVRFWDFR   66 (203)
Q Consensus         4 ~~~~~~~~---l~t~s~D~~v~--lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~----------~~D~~i~vwd~~   66 (203)
                      +..++++.   .++++.+++.+  +||..+++...  .... ...+.++|+++.|+..          +.|++|++||..
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~  104 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV  104 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCccccccccCCeEEEEECC
Confidence            45677775   33456666655  55877765432  1121 2246789999977764          458899999999


Q ss_pred             CceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecc
Q psy8891          67 AEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      +++.+..+..+..          .....+.. ...+.|+|||++|+.+. .++++.+||+.+++....+..+
T Consensus       105 t~~~~~~i~~p~~----------~~~~~g~~-p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~  165 (368)
T d1mdah_         105 TFLPIADIELPDA----------PRFSVGPR-VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA  165 (368)
T ss_dssp             TCCEEEEEEETTS----------CSCCBSCC-TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECS
T ss_pred             CCcEeeeecCCcc----------ceecccCC-ccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeecc
Confidence            9988776654311          00000000 11256889998888776 4689999999998887776554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.70  E-value=2.6e-08  Score=78.09  Aligned_cols=109  Identities=8%  Similarity=0.156  Sum_probs=75.4

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecC------cCceEEEEeCCCCEEEEec---------CCCeEEEEE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGS------SCNDLVTYDGAGTTIISGH---------FDKKVRFWD   64 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~------~~~~~~~~~~~~~~l~s~~---------~D~~i~vwd   64 (203)
                      .+.|.+|++.++.  .|+.+.+||+.+++..  +...      .....+.++||++.|+.++         .++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4678999987764  4789999999987643  2111      1224467899999988874         357889999


Q ss_pred             CCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q psy8891          65 FRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR  132 (203)
Q Consensus        65 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~  132 (203)
                      +.+++..........+..                   ..|+|||+.|+.. .++.+.+|+...++..+
T Consensus        99 ~~~~~~~~l~~~~~~~~~-------------------~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQW-------------------VTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             TTTTEECCSSCCCTTEEE-------------------EEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             CCCCcccccccCCccccc-------------------cccccCcceeeEe-ecccceEEECCCCceee
Confidence            998775322222222322                   4577788888886 47799999998876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.63  E-value=6.2e-08  Score=75.35  Aligned_cols=163  Identities=11%  Similarity=-0.026  Sum_probs=99.8

Q ss_pred             EcCCCCEEEE-EeCCCcEEEEeCCCCCeEE--ec--CcCceEEEEeCCCC--EEEEecCCC-----------------eE
Q psy8891           5 FLGDPTKVVS-GSCDRTLKIWDLRSTETKF--AG--SSCNDLVTYDGAGT--TIISGHFDK-----------------KV   60 (203)
Q Consensus         5 ~~~~~~~l~t-~s~D~~v~lwdl~~~~~~~--~~--~~~~~~~~~~~~~~--~l~s~~~D~-----------------~i   60 (203)
                      ++|||++|+. ...+..|.++|+.+.+...  ..  ......++++|+++  +++..+.+.                 .+
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~  158 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF  158 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence            4689998854 5678999999999866432  22  22233467888887  555554432                 34


Q ss_pred             EEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCce---------------E--------EEEcCCCCEEEEeeCC
Q psy8891          61 RFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCND---------------L--------VTYDGAGTTIISGHFD  117 (203)
Q Consensus        61 ~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~--------~~~~~~~~~l~s~s~d  117 (203)
                      ..+|..+.+...++...+....+++++++..++..+....               +        ..+.++|+++..+ .+
T Consensus       159 ~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~-~~  237 (441)
T d1qnia2         159 TAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG-DS  237 (441)
T ss_dssp             EEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT-TC
T ss_pred             EeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC-CC
Confidence            5678888777777766666677777887776665443211               0        1123456554433 34


Q ss_pred             CeEEEEECCCCceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEE-EEecCCCcEEEEeCCC
Q psy8891         118 KKVRFWDFRAEEKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYV-AVGSIDGNIYVWDCNT  192 (203)
Q Consensus       118 ~~i~iWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s~d~~v~~wd~~~  192 (203)
                      +.+.+++......+..++......                        -+.++|||+++ +++..+++|.+||+.+
T Consensus       238 ~v~vvd~~~~~~v~~~IPvgksPh------------------------Gv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPVPKNPH------------------------GLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CCCEEECSSSCSSEEEECCBSSCC------------------------CEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CcEEEEcccCCceEEEEeCCCCcc------------------------CceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            556665554444444443222111                        24456899986 5678899999999764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.58  E-value=1.7e-08  Score=79.22  Aligned_cols=70  Identities=11%  Similarity=0.042  Sum_probs=52.5

Q ss_pred             ceEEcCCCCEEEEEeC---------CCcEEEEeCCCCCeEE--ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE
Q psy8891           2 CAKFLGDPTKVVSGSC---------DRTLKIWDLRSTETKF--AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~---------D~~v~lwdl~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~   70 (203)
                      ++.|||||++|+.++.         ++.+.+||+.+++...  ........+.|+|||+.++.. .++.+.+|++..++.
T Consensus        66 ~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~  144 (470)
T d2bgra1          66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS  144 (470)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC
T ss_pred             eeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCce
Confidence            5789999999998753         5678899999865432  122233457899999999884 678999999988765


Q ss_pred             EE
Q psy8891          71 VR   72 (203)
Q Consensus        71 ~~   72 (203)
                      .+
T Consensus       145 ~~  146 (470)
T d2bgra1         145 YR  146 (470)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.40  E-value=0.00013  Score=53.29  Aligned_cols=171  Identities=9%  Similarity=0.019  Sum_probs=98.2

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE-ecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceE-EEeee---e
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKF-AGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK-VRDIE---L   76 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~-~~~~~---~   76 (203)
                      .++++|||+.++|...+++|..||.......+ ........++++++++++++...++.+..|+...... ...+.   .
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD  111 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCC
Confidence            36889999999999999999999876543322 2222234567899999988888888888888654321 11111   1


Q ss_pred             CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-----------cceEEEEEe
Q psy8891          77 HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIEL-----------HGKITSLDL  145 (203)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~-----------~~~v~~~~~  145 (203)
                      ......+                   .+.++++++++-+.++.+..+|...+........           ......+..
T Consensus       112 ~~~~n~i-------------------~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~  172 (302)
T d2p4oa1         112 AIFLNGI-------------------TPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR  172 (302)
T ss_dssp             CSCEEEE-------------------EESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE
T ss_pred             cccccee-------------------EEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc
Confidence            1122333                   3455666666666667777777665432211110           011333333


Q ss_pred             cCCcEEEEeecCeeE-------------------EeeeEEEEEEcCCCEEEEecCCCcEEEEeCC
Q psy8891         146 SKGKYYFVFAEGFKV-------------------QCDFTRAVFVVDDDYVAVGSIDGNIYVWDCN  191 (203)
Q Consensus       146 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~  191 (203)
                      ..+..+........+                   ......+++.++|.++++...++.|..++..
T Consensus       173 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         173 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             cCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            332222211110000                   0011235677888888888888999999876

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.26  E-value=0.00026  Score=50.53  Aligned_cols=152  Identities=14%  Similarity=0.074  Sum_probs=85.3

Q ss_pred             ceEEcCCCCEEEE-EeCCCcEEEEeCCCCCeEEe---cCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeC
Q psy8891           2 CAKFLGDPTKVVS-GSCDRTLKIWDLRSTETKFA---GSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         2 ~~~~~~~~~~l~t-~s~D~~v~lwdl~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      .+++.++|...++ .+..+.+..++.........   ......-++++++++..++....+.+++++-.....+......
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~   97 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL   97 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSC
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeee
Confidence            4678889986665 44557777776654332211   1111233677888888887777778877776555444333322


Q ss_pred             CeEEEEEecCCCceEEEecCC-----------------------ceEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q psy8891          78 GKITSLDLSKGTETKFAGSSC-----------------------NDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDI  134 (203)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~~~~~  134 (203)
                      .....+++.+++...+.....                       ..-+.++++|+.+++...++.|..+|....... .+
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~  176 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VL  176 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-EC
T ss_pred             eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee-ee
Confidence            345667776655433321111                       122566788888887778888999987654322 22


Q ss_pred             e-c-cceEEEEEecCCcEEEEe
Q psy8891         135 E-L-HGKITSLDLSKGKYYFVF  154 (203)
Q Consensus       135 ~-~-~~~v~~~~~~~~~~~~~~  154 (203)
                      . . -.....+.+.++..+++.
T Consensus       177 ~~~~~~~p~gi~~d~~g~l~vs  198 (260)
T d1rwia_         177 PFTDITAPWGIAVDEAGTVYVT  198 (260)
T ss_dssp             CCSSCCSEEEEEECTTCCEEEE
T ss_pred             eccccCCCccceeeeeeeeeee
Confidence            1 1 133566777655444443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.17  E-value=1.5e-05  Score=60.25  Aligned_cols=172  Identities=10%  Similarity=0.055  Sum_probs=88.0

Q ss_pred             ceEEcCCCCEEEEEeC-CCcEEEEeCCC-CCeE----Eec---CcCceEEEEeCCCCEE-EEecCCCeEEEEECCCceEE
Q psy8891           2 CAKFLGDPTKVVSGSC-DRTLKIWDLRS-TETK----FAG---SSCNDLVTYDGAGTTI-ISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~-D~~v~lwdl~~-~~~~----~~~---~~~~~~~~~~~~~~~l-~s~~~D~~i~vwd~~~~~~~   71 (203)
                      +++|+|||++++.++. ...|.+|+... +...    ...   .....-+.++|+++++ ++.-.+++|.+||+..++..
T Consensus       149 ~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~  228 (365)
T d1jofa_         149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM  228 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             EEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCce
Confidence            5789999998877654 45788887654 2211    111   1112346788999977 44557899999998765432


Q ss_pred             EeeeeCCeEEEEEecCCCceE-----EEecCCceEEEEcCCCCEEEEeeCC------CeEEEEECCCCceEEEEeccceE
Q psy8891          72 RDIELHGKITSLDLSKGTETK-----FAGSSCNDLVTYDGAGTTIISGHFD------KKVRFWDFRAEEKVRDIELHGKI  140 (203)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~s~d------~~i~iWd~~~~~~~~~~~~~~~v  140 (203)
                      ....    +..+.+.+.....     ..+......+.++|+|++|+++...      ..|..|++.....+........ 
T Consensus       229 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-  303 (365)
T d1jofa_         229 PVYT----HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP-  303 (365)
T ss_dssp             EEEE----EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE-
T ss_pred             EEEE----eeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE-
Confidence            1111    1111111110000     0000011235678999998887542      2366666543222211100000 


Q ss_pred             EEEEecCCcEEEEeecCeeEEeeeEEEEEEc-CCCEEEEe-cCCCcEEEEeCCCce
Q psy8891         141 TSLDLSKGKYYFVFAEGFKVQCDFTRAVFVV-DDDYVAVG-SIDGNIYVWDCNTEQ  194 (203)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~-s~d~~v~~wd~~~~~  194 (203)
                         ....+.             ......++| +|++|+.+ ..+++|.+|+.+...
T Consensus       304 ---~~~~G~-------------~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         304 ---TPTSGG-------------HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             ---CSSCCT-------------TCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             ---EEcCCC-------------CccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence               000000             011234556 67876555 568899999876443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.08  E-value=1.4e-05  Score=61.80  Aligned_cols=81  Identities=12%  Similarity=0.088  Sum_probs=53.4

Q ss_pred             EEEEeCCCcEEEEeCCCCCeEEecC-------------------------------cCceEE--EEeCCCCEEEEe-cCC
Q psy8891          12 VVSGSCDRTLKIWDLRSTETKFAGS-------------------------------SCNDLV--TYDGAGTTIISG-HFD   57 (203)
Q Consensus        12 l~t~s~D~~v~lwdl~~~~~~~~~~-------------------------------~~~~~~--~~~~~~~~l~s~-~~D   57 (203)
                      ++||+.+|+|++||+.+.+......                               ++....  ...|||++|+.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            6789999999999997654321100                               001111  124678877554 578


Q ss_pred             CeEEEEECCCceEEEeeee--CCeEEEEEecCCCceE
Q psy8891          58 KKVRFWDFRAEEKVRDIEL--HGKITSLDLSKGTETK   92 (203)
Q Consensus        58 ~~i~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~   92 (203)
                      +.|.++|+++.+....+..  ...+..+.+++++.+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~  130 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTN  130 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCC
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEE
Confidence            8999999999987765543  3457777787776654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.0036  Score=43.99  Aligned_cols=53  Identities=13%  Similarity=0.144  Sum_probs=28.5

Q ss_pred             ceEEcCCCCEEEEEeCCC-c--EEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEe
Q psy8891           2 CAKFLGDPTKVVSGSCDR-T--LKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISG   54 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~-~--v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~   54 (203)
                      +-+|||||++||-.+... .  +.+.+.......  ...........++|++..++..
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~  100 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFA  100 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEe
Confidence            457999999987554433 2  555555554422  1122222334566666655443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.65  E-value=0.0051  Score=44.93  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-----C---cCceEEEEeCCCCEEEE
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-----S---SCNDLVTYDGAGTTIIS   53 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-----~---~~~~~~~~~~~~~~l~s   53 (203)
                      ++|.+++..++.+...+.|...|..........     .   .+++ +.++++|+..+|
T Consensus        76 l~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pnd-l~~d~~G~lyvt  133 (314)
T d1pjxa_          76 CQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCND-CAFDYEGNLWIT  133 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCE-EEECTTSCEEEE
T ss_pred             EEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcE-EEECCCCCEEEe
Confidence            678899998888887778888888764332111     0   1222 456777776665

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.44  E-value=0.01  Score=43.28  Aligned_cols=67  Identities=6%  Similarity=-0.016  Sum_probs=44.7

Q ss_pred             eEEcCCCCEEEEEeC-------CCcEEEEeCCCCCeEE-ecC------cCceEEEEeCCCCEEEEecCCCeEEEEECCCc
Q psy8891           3 AKFLGDPTKVVSGSC-------DRTLKIWDLRSTETKF-AGS------SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE   68 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~-------D~~v~lwdl~~~~~~~-~~~------~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~   68 (203)
                      .+|.++|+..++...       +++|..||..+..... ...      ....-+.+.++++.++.++..+.|...|....
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~  102 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGT  102 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSC
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCc
Confidence            568899987766433       4678889988765322 111      11123677888888888887788888887654


Q ss_pred             e
Q psy8891          69 E   69 (203)
Q Consensus        69 ~   69 (203)
                      .
T Consensus       103 ~  103 (314)
T d1pjxa_         103 F  103 (314)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.38  E-value=0.013  Score=42.79  Aligned_cols=181  Identities=8%  Similarity=0.004  Sum_probs=95.6

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEE---ecCcCceEEEEeCCCCEEEEecC--CCeEEEE--ECCCceEEEeee
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKF---AGSSCNDLVTYDGAGTTIISGHF--DKKVRFW--DFRAEEKVRDIE   75 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~--D~~i~vw--d~~~~~~~~~~~   75 (203)
                      ++|.++|...++-...+.|.-||..+.....   ........+++.++++++++...  .....++  +...........
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~  124 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE  124 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc
Confidence            5788999877777788999999887754321   12222234677889887776533  2333344  433333222211


Q ss_pred             e---CCeEEEEEecCCCceEEEe----------------------------cCCceEEEEcCCCCEEEEe-eCCCeEEEE
Q psy8891          76 L---HGKITSLDLSKGTETKFAG----------------------------SSCNDLVTYDGAGTTIISG-HFDKKVRFW  123 (203)
Q Consensus        76 ~---~~~v~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~l~s~-s~d~~i~iW  123 (203)
                      .   ......+.+.+++...+..                            .....=+.|+++++.|+.+ +..++|..+
T Consensus       125 ~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~  204 (319)
T d2dg1a1         125 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRI  204 (319)
T ss_dssp             SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEE
Confidence            1   1124445555544322211                            0111115677887765444 456788888


Q ss_pred             ECCCC-ceEEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         124 DFRAE-EKVRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       124 d~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      |+... .........  + ......          .   ....-+++.++|.+.++....+.|.++|. +|+++.+++
T Consensus       205 d~~~~g~~~~~~~~~--~-~~~~~~----------~---~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         205 ALEDDGVTIQPFGAT--I-PYYFTG----------H---EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             EECTTSSSEEEEEEE--E-EEECCS----------S---SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             EEcCCCceeccccce--e-eeccCC----------c---cceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEe
Confidence            77532 221111100  0 000000          0   00123455677888788788899999996 488877764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.27  E-value=0.014  Score=42.03  Aligned_cols=114  Identities=13%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeE
Q psy8891          41 LVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKV  120 (203)
Q Consensus        41 ~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  120 (203)
                      -+++.++|+++++...+++|..||.... ........+.+..+                   .++++|+.+++...++.+
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~~~~~~~gl-------------------a~~~dG~l~v~~~~~~~~   91 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGL-------------------AFTSNGDLVATGWNADSI   91 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEE-------------------EECTTSCEEEEEECTTSC
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEEEcCCCCcceE-------------------EEcCCCCeEEEecCCceE
Confidence            3678899999999999999988885433 22222233444444                   455677777777777888


Q ss_pred             EEEECCCCce--EEEEeccceEEEEEecCCcEEEEeecCeeEEeeeEEEEEEcCCCEEEEecCCCcEEEEeCCCceee
Q psy8891         121 RFWDFRAEEK--VRDIELHGKITSLDLSKGKYYFVFAEGFKVQCDFTRAVFVVDDDYVAVGSIDGNIYVWDCNTEQVE  196 (203)
Q Consensus       121 ~iWd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~v~~wd~~~~~~~  196 (203)
                      ..|+......  .......         ...             ......+.+++.++++-+.++.+..+|...+...
T Consensus        92 ~~~~~~~~~~~~~~~~~~~---------~~~-------------~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~  147 (302)
T d2p4oa1          92 PVVSLVKSDGTVETLLTLP---------DAI-------------FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  147 (302)
T ss_dssp             EEEEEECTTSCEEEEEECT---------TCS-------------CEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEecccccceeeccccC---------Ccc-------------ccceeEEccCCCEEeeccccccceeeeccCCcce
Confidence            8887643221  1111110         000             0122334567777777777888888887765443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.13  E-value=0.021  Score=40.54  Aligned_cols=190  Identities=11%  Similarity=0.162  Sum_probs=100.9

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCe-EEecC------c-CceEEEEeCC-CCEEE-EecCCCeEEEEECCCceEEE
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTET-KFAGS------S-CNDLVTYDGA-GTTII-SGHFDKKVRFWDFRAEEKVR   72 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~-~~~~~------~-~~~~~~~~~~-~~~l~-s~~~D~~i~vwd~~~~~~~~   72 (203)
                      +++.++++.+++-...+.|++||.+..-. .+...      . ...-+.+..+ +..++ ..+.++.|.+++.. ++...
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~  106 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVR  106 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEE
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-cccee
Confidence            57789999888877888999999764221 11110      0 0111233333 33333 33455677777753 33333


Q ss_pred             eeeeC--CeEEEEEecCCCceEEEecCCceE------------------------EEEcCCCCEEEEeeCCCeEEEEECC
Q psy8891          73 DIELH--GKITSLDLSKGTETKFAGSSCNDL------------------------VTYDGAGTTIISGHFDKKVRFWDFR  126 (203)
Q Consensus        73 ~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~s~s~d~~i~iWd~~  126 (203)
                      .+...  .....+++.+++...++......+                        ++++++++.+++....+.|+++|..
T Consensus       107 ~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~  186 (279)
T d1q7fa_         107 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  186 (279)
T ss_dssp             EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             ecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeecC
Confidence            33211  223445555544433333222222                        3455666666666667788888864


Q ss_pred             CCceEEEEecc---ceEEEEEecCCcEEEEeecC--eeE---------E---------eeeEEEEEEcCCCEEEEecCCC
Q psy8891         127 AEEKVRDIELH---GKITSLDLSKGKYYFVFAEG--FKV---------Q---------CDFTRAVFVVDDDYVAVGSIDG  183 (203)
Q Consensus       127 ~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~--~~~---------~---------~~~~~~~~~~~~~~l~s~s~d~  183 (203)
                       ++.+..+-..   ..+..+++.+...+++....  ..+         .         .....+++.+++.+++ ++.++
T Consensus       187 -G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~  264 (279)
T d1q7fa_         187 -GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDY  264 (279)
T ss_dssp             -CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTT
T ss_pred             -CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCC
Confidence             5555555322   23566666555444433211  001         0         0123456777876554 55789


Q ss_pred             cEEEEeCCCcee
Q psy8891         184 NIYVWDCNTEQV  195 (203)
Q Consensus       184 ~v~~wd~~~~~~  195 (203)
                      .|++|...+..+
T Consensus       265 ~v~~fr~~~~~~  276 (279)
T d1q7fa_         265 RLYIYRYVQLAP  276 (279)
T ss_dssp             EEEEEECSCCCC
T ss_pred             eEEEEEeeeecC
Confidence            999999876544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.06  E-value=0.023  Score=40.34  Aligned_cols=105  Identities=10%  Similarity=0.172  Sum_probs=66.3

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEec-C---cCceEEEEeCCCCEEEEecC-CCeEEEEECCCceEEEeeeeC
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAG-S---SCNDLVTYDGAGTTIISGHF-DKKVRFWDFRAEEKVRDIELH   77 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~-~---~~~~~~~~~~~~~~l~s~~~-D~~i~vwd~~~~~~~~~~~~~   77 (203)
                      +++.+++..+++....+.|++||.........+ .   ....-++++++++.+++-.. ++.|.+|+ .+++.+.++...
T Consensus       162 i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~  240 (279)
T d1q7fa_         162 VVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESK  240 (279)
T ss_dssp             EEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEES
T ss_pred             eeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCC
Confidence            456778888888888899999998654322211 1   11234678899987776544 45799998 456655554322


Q ss_pred             C---eEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCC
Q psy8891          78 G---KITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAE  128 (203)
Q Consensus        78 ~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~  128 (203)
                      .   ....                   ++++++|. |+.++.++.|++|.....
T Consensus       241 ~~~~~p~~-------------------vav~~dG~-l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         241 VKHAQCFD-------------------VALMDDGS-VVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             SCCSCEEE-------------------EEEETTTE-EEEEETTTEEEEEECSCC
T ss_pred             CCCCCEeE-------------------EEEeCCCc-EEEEeCCCeEEEEEeeee
Confidence            1   1222                   34566765 455668999999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.024  Score=39.47  Aligned_cols=75  Identities=7%  Similarity=-0.010  Sum_probs=47.8

Q ss_pred             cEEEEeCCCCC--eEEecCcCceEEEEeCCCCEEEEecCCC---eEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEE
Q psy8891          20 TLKIWDLRSTE--TKFAGSSCNDLVTYDGAGTTIISGHFDK---KVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFA   94 (203)
Q Consensus        20 ~v~lwdl~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~D~---~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (203)
                      .|.+-|.....  .............|+|||+.|+-.....   .+.+.+...+.........+......++|++..++.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            56777776533  2333333334467999999887654333   566777766665444444566777888888887664

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0046  Score=47.84  Aligned_cols=119  Identities=9%  Similarity=0.064  Sum_probs=65.9

Q ss_pred             EEcCCCCEEEEE---------eCCCcEEEEeCCCCCeEEe--c---CcCceEEEEeCCCCEEEEecCCCeEEEEECCCce
Q psy8891           4 KFLGDPTKVVSG---------SCDRTLKIWDLRSTETKFA--G---SSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEE   69 (203)
Q Consensus         4 ~~~~~~~~l~t~---------s~D~~v~lwdl~~~~~~~~--~---~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~   69 (203)
                      .||||++.++-+         |..+...++|+.++.....  .   ........|+|+|+.|+-. .++.|.+.+...++
T Consensus        67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~~  145 (465)
T d1xfda1          67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCAHVGKQ  145 (465)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEESSSSSC
T ss_pred             EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE-ecceEEEEecCCCc
Confidence            589999987665         3457788899987654321  1   1111225689999987765 46788888887665


Q ss_pred             EEEeeee--CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCC-CeEEEEEC
Q psy8891          70 KVRDIEL--HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFD-KKVRFWDF  125 (203)
Q Consensus        70 ~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-~~i~iWd~  125 (203)
                      .++....  .+.+..-.  ++...--..........|+|||+.||....| ..|..+.+
T Consensus       146 ~~~lt~~g~~~~i~nG~--~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         146 AIRVVSTGKEGVIYNGL--SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             CEEEECCCBTTTEEEEE--CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             eEEEecccCcceeeccc--cchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence            4332211  11121100  0000000000112356789999999887654 45666654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.87  E-value=0.034  Score=38.69  Aligned_cols=90  Identities=12%  Similarity=0.020  Sum_probs=53.0

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEeCCCCCeE--EecCcCceEEEEeCCCCEEEEec----CCC--eEEEEECCCceEEEe
Q psy8891           4 KFLGD--PTKVVSGSCDRTLKIWDLRSTETK--FAGSSCNDLVTYDGAGTTIISGH----FDK--KVRFWDFRAEEKVRD   73 (203)
Q Consensus         4 ~~~~~--~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~----~D~--~i~vwd~~~~~~~~~   73 (203)
                      ..+||  |++++-.+ ++.|.+.|+.+++..  ...........|+|||+.|+-..    .+.  .|.+.++..++..+.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            35899  99887654 456777799886643  22323334467999999887543    222  467777776665322


Q ss_pred             eeeC-------CeEEEEEecCCCceEEE
Q psy8891          74 IELH-------GKITSLDLSKGTETKFA   94 (203)
Q Consensus        74 ~~~~-------~~v~~~~~~~~~~~~~~   94 (203)
                      ....       .......++|++..++.
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEE
Confidence            1111       11244567777766553

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.40  E-value=0.11  Score=38.37  Aligned_cols=76  Identities=13%  Similarity=0.109  Sum_probs=44.4

Q ss_pred             EEEEeCCCCEEEEecC-CCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEee-CCC
Q psy8891          41 LVTYDGAGTTIISGHF-DKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGH-FDK  118 (203)
Q Consensus        41 ~~~~~~~~~~l~s~~~-D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~d~  118 (203)
                      .+.++|++++|++++. ...|.+|+......+...      ..+...+.+.       ....+.|+|++++++... .++
T Consensus       149 ~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~------~~~~~~~~g~-------gPr~i~f~pdg~~~yv~~e~~~  215 (365)
T d1jofa_         149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELV------GSVDAPDPGD-------HPRWVAMHPTGNYLYALMEAGN  215 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE------EEEECSSTTC-------CEEEEEECTTSSEEEEEETTTT
T ss_pred             EEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec------cceeecCCCC-------ceEEEEECCCCceEEEeccCCC
Confidence            4778999998887764 457888876543322111      0111111010       112356777777775554 578


Q ss_pred             eEEEEECCCCc
Q psy8891         119 KVRFWDFRAEE  129 (203)
Q Consensus       119 ~i~iWd~~~~~  129 (203)
                      +|.+||+..+.
T Consensus       216 ~V~v~~~~~~~  226 (365)
T d1jofa_         216 RICEYVIDPAT  226 (365)
T ss_dssp             EEEEEEECTTT
T ss_pred             EEEEEEecCCC
Confidence            99999987654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.89  E-value=0.09  Score=41.46  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=25.9

Q ss_pred             cCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         171 VDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       171 ~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ..+.+++.|+.|+.++.+|.++|+.+=.++
T Consensus       486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         486 TAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            367888899999999999999999986653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.81  E-value=0.16  Score=35.23  Aligned_cols=106  Identities=9%  Similarity=0.066  Sum_probs=57.7

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEecC--cCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEE-eeeeCC
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFAGS--SCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVR-DIELHG   78 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~~~--~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~-~~~~~~   78 (203)
                      .+++++++...++....+.+++++-..........  .....+++++++++.++-.....+..++........ ....-.
T Consensus        61 gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  140 (260)
T d1rwia_          61 GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLN  140 (260)
T ss_dssp             CEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCC
T ss_pred             EEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccC
Confidence            46788899888887777777777655444332211  112335677888777766666667777654433211 111112


Q ss_pred             eEEEEEecCCCceEEEecCCceEEEEcCC
Q psy8891          79 KITSLDLSKGTETKFAGSSCNDLVTYDGA  107 (203)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (203)
                      ....+++.+++...++......+..++++
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~  169 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAE  169 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             CcceeeecCCCCEeeeccccccccccccc
Confidence            23456666665544443333334444433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.79  E-value=0.11  Score=40.71  Aligned_cols=29  Identities=10%  Similarity=0.232  Sum_probs=25.2

Q ss_pred             CCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         172 DDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       172 ~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .+.+++.|+.|+.++-+|.++|+.+=.++
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence            56788889999999999999999986654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.28  E-value=0.12  Score=40.68  Aligned_cols=29  Identities=17%  Similarity=0.155  Sum_probs=24.9

Q ss_pred             CCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         172 DDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       172 ~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .+..++.|+.|+.++-+|.++|+.+=.++
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            56678889999999999999999986553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.85  E-value=0.16  Score=39.90  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=28.5

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceEEEEeccce
Q psy8891         107 AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK  139 (203)
Q Consensus       107 ~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~  139 (203)
                      .|..|+.++.|+.++.+|.++|+.+.++.+...
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~  519 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCC
Confidence            456888899999999999999999999887643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.76  E-value=0.21  Score=39.39  Aligned_cols=30  Identities=17%  Similarity=0.234  Sum_probs=25.8

Q ss_pred             cCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         171 VDDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       171 ~~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      ..+..++.|+.|+.++-+|.++|+.+=.++
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            467788889999999999999999986654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.72  E-value=0.25  Score=38.80  Aligned_cols=33  Identities=9%  Similarity=0.200  Sum_probs=28.3

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceEEEEeccce
Q psy8891         107 AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK  139 (203)
Q Consensus       107 ~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~  139 (203)
                      .+..++.++.|+.++.+|.++|+.+.++++...
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~  506 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSG  506 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCC
Confidence            355788899999999999999999999887654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.05  Score=41.78  Aligned_cols=107  Identities=8%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             eEEcCCCCEEEEEeCCCcEEEEeCCCCCeE--EecCc----CceEEEEeCCCCEEEEe---------cCCCeEEEEECCC
Q psy8891           3 AKFLGDPTKVVSGSCDRTLKIWDLRSTETK--FAGSS----CNDLVTYDGAGTTIISG---------HFDKKVRFWDFRA   67 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~--~~~~~----~~~~~~~~~~~~~l~s~---------~~D~~i~vwd~~~   67 (203)
                      ..|.+++..++. ..||.|.+||+.+++..  .....    ......++||++.|+-.         +..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            457777766554 45789999999875532  22211    12234678999976654         3457888999987


Q ss_pred             ceEEEeeee---CCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeCCCeEEEEECCCCce
Q psy8891          68 EEKVRDIEL---HGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEK  130 (203)
Q Consensus        68 ~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~~~~  130 (203)
                      +........   .+.+.                   ...|+|||+.||-+. ++.|.+.+...+..
T Consensus       101 ~~~~~l~~~~~~~~~l~-------------------~~~wSPDG~~iafv~-~~nl~~~~~~~~~~  146 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQ-------------------YAGWGPKGQQLIFIF-ENNIYYCAHVGKQA  146 (465)
T ss_dssp             CCCEECCCTTCCSCCCS-------------------BCCBCSSTTCEEEEE-TTEEEEESSSSSCC
T ss_pred             CceeeccCccCCccccc-------------------eeeeccCCceEEEEe-cceEEEEecCCCce
Confidence            754221111   11111                   134667777766654 45666666655443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.49  E-value=0.3  Score=38.21  Aligned_cols=33  Identities=15%  Similarity=0.259  Sum_probs=28.1

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceEEEEeccce
Q psy8891         107 AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK  139 (203)
Q Consensus       107 ~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~  139 (203)
                      .+.+++.++.|+.++.+|..+|+.+.++++...
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~  500 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG  500 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCC
Confidence            345788899999999999999999998887643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.92  E-value=0.34  Score=38.24  Aligned_cols=29  Identities=28%  Similarity=0.381  Sum_probs=25.1

Q ss_pred             CCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy8891         172 DDDYVAVGSIDGNIYVWDCNTEQVEAVLK  200 (203)
Q Consensus       172 ~~~~l~s~s~d~~v~~wd~~~~~~~~~~~  200 (203)
                      .+..++.|+.|+.++-+|.++|+.+=.++
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            56788889999999999999999986653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.11  E-value=0.94  Score=31.95  Aligned_cols=67  Identities=10%  Similarity=0.039  Sum_probs=35.5

Q ss_pred             ceEEcCCCCEEEEEeCCCcEEEEeCCCCCeEEe-c----CcC--ceEEEEeCCCCEEEEecC----CCeEEEEECCCceE
Q psy8891           2 CAKFLGDPTKVVSGSCDRTLKIWDLRSTETKFA-G----SSC--NDLVTYDGAGTTIISGHF----DKKVRFWDFRAEEK   70 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D~~v~lwdl~~~~~~~~-~----~~~--~~~~~~~~~~~~l~s~~~----D~~i~vwd~~~~~~   70 (203)
                      ++++.+++..+++ +.+ -+.++|..+++.... .    ...  ..-+.++++|+..++...    .+.-.+|.+..++.
T Consensus        63 ~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~  140 (295)
T d2ghsa1          63 ALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV  140 (295)
T ss_dssp             EEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE
T ss_pred             EEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE
Confidence            3455667766654 344 577888887664321 1    111  122456778876555432    23445666655543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.82  E-value=1.1  Score=31.91  Aligned_cols=135  Identities=13%  Similarity=0.053  Sum_probs=69.7

Q ss_pred             ceEEcCCCCEEEEEeCC--Cc--EEEEeCCCCCeE--EecC---cCceEEEEeCCCCEEEEecC------CCeEEEEECC
Q psy8891           2 CAKFLGDPTKVVSGSCD--RT--LKIWDLRSTETK--FAGS---SCNDLVTYDGAGTTIISGHF------DKKVRFWDFR   66 (203)
Q Consensus         2 ~~~~~~~~~~l~t~s~D--~~--v~lwdl~~~~~~--~~~~---~~~~~~~~~~~~~~l~s~~~------D~~i~vwd~~   66 (203)
                      .++|.+||.++++...+  ..  +...+.......  ....   ....-+.+.++|++.++-..      -+.+..++..
T Consensus        86 gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d  165 (319)
T d2dg1a1          86 AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD  165 (319)
T ss_dssp             EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred             EEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc
Confidence            36778888877765433  23  333344333221  1111   11123567888876665322      1224444433


Q ss_pred             CceEEEeeeeCCeEEEEEecCCCceEEEec-CCce-------------------------------EEEEcCCCCEEEEe
Q psy8891          67 AEEKVRDIELHGKITSLDLSKGTETKFAGS-SCND-------------------------------LVTYDGAGTTIISG  114 (203)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~-------------------------------~~~~~~~~~~l~s~  114 (203)
                      .+........-...+.+++++++..++... ..+.                               =++++.+|++.++.
T Consensus       166 g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         166 FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            222211111112345667777766554321 1111                               14566778877777


Q ss_pred             eCCCeEEEEECCCCceEEEEecc
Q psy8891         115 HFDKKVRFWDFRAEEKVRDIELH  137 (203)
Q Consensus       115 s~d~~i~iWd~~~~~~~~~~~~~  137 (203)
                      ..++.|.++|. .++.+.++.++
T Consensus       246 ~~~g~V~~~~p-~G~~l~~i~~P  267 (319)
T d2dg1a1         246 YGQGRVLVFNK-RGYPIGQILIP  267 (319)
T ss_dssp             ETTTEEEEECT-TSCEEEEEECT
T ss_pred             cCCCEEEEECC-CCcEEEEEeCC
Confidence            77889999995 58877777665

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.52  E-value=1.2  Score=31.45  Aligned_cols=66  Identities=14%  Similarity=-0.004  Sum_probs=39.8

Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEeCCCCCeE-EecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEE
Q psy8891           4 KFLGDPT-KVVSGSCDRTLKIWDLRSTETK-FAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKV   71 (203)
Q Consensus         4 ~~~~~~~-~l~t~s~D~~v~lwdl~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~   71 (203)
                      .|.+... ...+=-..+.|.-||..+++.. .........++..+++.+++++ .+ -+.++|..+++..
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~   91 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT   91 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceee
Confidence            4565444 4444446678888898876543 2223223345566677666654 44 5889998887653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.59  E-value=1.3  Score=30.04  Aligned_cols=67  Identities=15%  Similarity=0.132  Sum_probs=36.8

Q ss_pred             EeCC--CCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEecCCceEEEEcCCCCEEEEeeC----C
Q psy8891          44 YDGA--GTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGSSCNDLVTYDGAGTTIISGHF----D  117 (203)
Q Consensus        44 ~~~~--~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d  117 (203)
                      .+|+  |+.|+-.+ ++.|.+.|+..++..+-....+.....                   .|+|||+.|+-...    +
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p-------------------~~SPDG~~iaf~~~~~~~~   65 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNA-------------------RFFPDGRKIAIRVMRGSSL   65 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEE-------------------EECTTSSEEEEEEEESTTC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCE-------------------EECCCCCEEEEEEeeCCCC
Confidence            4566  77766543 456888899877654322222333333                   45666666664432    2


Q ss_pred             C--eEEEEECCCCce
Q psy8891         118 K--KVRFWDFRAEEK  130 (203)
Q Consensus       118 ~--~i~iWd~~~~~~  130 (203)
                      .  .|.+.+...++.
T Consensus        66 ~~~~i~~~~~~~g~~   80 (281)
T d1k32a2          66 NTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEEEETTTTEE
T ss_pred             CceEEEEEEecCCce
Confidence            2  356666665543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.38  E-value=0.23  Score=39.14  Aligned_cols=33  Identities=15%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceEEEEeccce
Q psy8891         107 AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK  139 (203)
Q Consensus       107 ~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~  139 (203)
                      .|.++++++.|+.++.+|.++|+.+.++++...
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~  528 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC
Confidence            456888899999999999999999999887643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.32  E-value=2.7  Score=31.58  Aligned_cols=72  Identities=7%  Similarity=-0.072  Sum_probs=41.0

Q ss_pred             CCCCEEEEE-eCCCcEEEEeCCCCCeE--EecC--cCceEEEEe--CCCCEEEEecCCC------------------eEE
Q psy8891           7 GDPTKVVSG-SCDRTLKIWDLRSTETK--FAGS--SCNDLVTYD--GAGTTIISGHFDK------------------KVR   61 (203)
Q Consensus         7 ~~~~~l~t~-s~D~~v~lwdl~~~~~~--~~~~--~~~~~~~~~--~~~~~l~s~~~D~------------------~i~   61 (203)
                      +||++|+.. ..+..|-+-|+++.++.  ....  .....++..  |+..+++..+.+.                  .+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            378877654 47888999999886652  2221  111122333  3445787776632                  355


Q ss_pred             EEECCCceEEEeeeeCC
Q psy8891          62 FWDFRAEEKVRDIELHG   78 (203)
Q Consensus        62 vwd~~~~~~~~~~~~~~   78 (203)
                      +.|..+.+....+...+
T Consensus       177 ~ID~~tm~V~~QV~V~g  193 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVSG  193 (459)
T ss_dssp             EEETTTTEEEEEEEESS
T ss_pred             EEecCCceEEEEeeeCC
Confidence            67777766655544433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=89.95  E-value=2.4  Score=30.37  Aligned_cols=65  Identities=17%  Similarity=0.227  Sum_probs=42.0

Q ss_pred             cCCCCEEEEEeCCC-----------cEEEEeCCCCCeE----EecC--cCceEEEEeCCCCEEEEecCC-CeEEEEECCC
Q psy8891           6 LGDPTKVVSGSCDR-----------TLKIWDLRSTETK----FAGS--SCNDLVTYDGAGTTIISGHFD-KKVRFWDFRA   67 (203)
Q Consensus         6 ~~~~~~l~t~s~D~-----------~v~lwdl~~~~~~----~~~~--~~~~~~~~~~~~~~l~s~~~D-~~i~vwd~~~   67 (203)
                      ..+|+.++-|+.+.           .+.+||..+.+-.    ....  .......+.+++.+++.|+.+ ..+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            45788888888632           2678999875421    1111  111224567889999998766 5899999877


Q ss_pred             ceE
Q psy8891          68 EEK   70 (203)
Q Consensus        68 ~~~   70 (203)
                      ..-
T Consensus       108 ~~w  110 (387)
T d1k3ia3         108 DSW  110 (387)
T ss_dssp             TEE
T ss_pred             Ccc
Confidence            653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.51  E-value=0.63  Score=36.66  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=28.3

Q ss_pred             CCCEEEEeeCCCeEEEEECCCCceEEEEeccce
Q psy8891         107 AGTTIISGHFDKKVRFWDFRAEEKVRDIELHGK  139 (203)
Q Consensus       107 ~~~~l~s~s~d~~i~iWd~~~~~~~~~~~~~~~  139 (203)
                      .|..++.++.|+.++.+|.++|+.+.++.+...
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~  515 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCCC
Confidence            456788899999999999999999999887643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.22  E-value=4.9  Score=28.66  Aligned_cols=99  Identities=14%  Similarity=0.221  Sum_probs=61.2

Q ss_pred             CCCcEEEEeCCCCCeEEecCcCceEEEEeCCCCEEEEecCCCeEEEEECCCceEEEeeeeCCeEEEEEecCCCceEEEec
Q psy8891          17 CDRTLKIWDLRSTETKFAGSSCNDLVTYDGAGTTIISGHFDKKVRFWDFRAEEKVRDIELHGKITSLDLSKGTETKFAGS   96 (203)
Q Consensus        17 ~D~~v~lwdl~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (203)
                      ...+|-+-|+..+.......-..+..-..|..+.|+--+ ..++.|+|+++.+.++.....+.|.-+.|-.+        
T Consensus        43 ~~~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~--------  113 (327)
T d1utca2          43 EQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--------  113 (327)
T ss_dssp             TEEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS--------
T ss_pred             CCceEEEEECCCCCcceecccchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC--------
Confidence            345788888876443221111122234567766665554 56899999999999988887777655554432        


Q ss_pred             CCceEEEEcCCCCEEEEeeCCCeEEEEECCC-CceEEEEecc
Q psy8891          97 SCNDLVTYDGAGTTIISGHFDKKVRFWDFRA-EEKVRDIELH  137 (203)
Q Consensus        97 ~~~~~~~~~~~~~~l~s~s~d~~i~iWd~~~-~~~~~~~~~~  137 (203)
                                  +.|+-.. +..|.-|++.. .++.+.+..+
T Consensus       114 ------------~~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2         114 ------------NTVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             ------------SEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             ------------CEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence                        2454444 46899999853 2456666544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.00  E-value=7.7  Score=28.49  Aligned_cols=67  Identities=10%  Similarity=0.071  Sum_probs=41.2

Q ss_pred             eEEcCCCCEEE-EEe----CCCcEEEEeCCCCCeEEec-C-cCceEEEEeCCCCEEEEecCC----------------Ce
Q psy8891           3 AKFLGDPTKVV-SGS----CDRTLKIWDLRSTETKFAG-S-SCNDLVTYDGAGTTIISGHFD----------------KK   59 (203)
Q Consensus         3 ~~~~~~~~~l~-t~s----~D~~v~lwdl~~~~~~~~~-~-~~~~~~~~~~~~~~l~s~~~D----------------~~   59 (203)
                      .++|||+++++ +-+    .--++++.|+.+++..... . .....+.|.++++.|+-...|                ..
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~  209 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK  209 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence            45789999876 333    3346999999987643211 1 111336788888877644322                35


Q ss_pred             EEEEECCCce
Q psy8891          60 VRFWDFRAEE   69 (203)
Q Consensus        60 i~vwd~~~~~   69 (203)
                      +..|.+.+..
T Consensus       210 v~~h~lgt~~  219 (430)
T d1qfma1         210 LYYHVLGTDQ  219 (430)
T ss_dssp             EEEEETTSCG
T ss_pred             EEEEECCCCc
Confidence            7777776653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=81.80  E-value=3.5  Score=29.42  Aligned_cols=67  Identities=15%  Similarity=0.103  Sum_probs=44.7

Q ss_pred             eEEcCCCCEEEEEeCC-CcEEEEeCCCCCeEEec----CcCceEEEEeCCCCEEEEecCC------CeEEEEECCCce
Q psy8891           3 AKFLGDPTKVVSGSCD-RTLKIWDLRSTETKFAG----SSCNDLVTYDGAGTTIISGHFD------KKVRFWDFRAEE   69 (203)
Q Consensus         3 ~~~~~~~~~l~t~s~D-~~v~lwdl~~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~D------~~i~vwd~~~~~   69 (203)
                      +.+.+|++.++.|+.+ .++.+||..+..-....    .......+..++++.++.|+.+      ..+.+||..+.+
T Consensus        81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          81 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            4577899999998765 68999998764432111    1111224456788888888753      468899987664