Psyllid ID: psy8893

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820
MSTHLSGGKVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQTTTSSRRNRNTQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSGYLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSAKEQLKWSLLK
cccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHccccEEEEEEcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHccccccccEEEEEEccEEEcccccEEEcccHHHHHHcccccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccEEEEcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccEEEEEcccccHHHHHccccccccccHHHHHHHHHHHHHccccccEEEEEccEEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHccccEEEcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEEcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccc
cccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcHHHccHHHHHHHHHHHHHccccEEEEcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccHHHHHHHHHccccccEEEEEEEcEEEEcccccEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccEccccccccccHHHcccEEccccccccccccHHHHHcccHHHHHHHHHHHHccccccHHHHHHHcccccHHHcccccHHHccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccEEEccHHHHcEEEEcccEEEEEcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEEEEEEEcccccccHHHHHHHHHccccEEcEEEEcHHHHHHHcHHcHHHHHHHHHccEEEEEccccccccccccccccccEEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcc
msthlsggkvnISLVQDFARTQFLELLEKCsgkkaiiwddalagpvGLVANVQllnerdvkrnihlkpgslppmenianvifitrpivkHMDIIADNIKRkekekrsdtrridyhlffvprkslLCEQRLqengvlgnfnIIEAftcnlfpfdndLVSMEMELAYREYHLEKDPTCLYEVAQAIITLQNLygiiprvsgkgpcvQQVWDLTkrlslepknknvnqcktsqiSQLILIDRNVDVLTPLATQLTYEGLIDEIFGihnttakfpgakfsqseedsnFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFIsaqfdtqnyhEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFlgvdtdkalpYIENAIAHKKPLMKVLKLICMQsftssglkpkvLEYYKREIIQTYGFQHILTLSNLEqagllknsqnsgtRQYTLLRKMMRLtvedsselapadinfvhsiyAPLSIRLVQRltrepsiipqdllallpgavleetqtttssrrnrntqenkMLTFQEASLYTIkgiaildndghrllakyydpnilsTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEicdggiiqeadSSAVVQRVALrvddiplgeQTVAQVFQSGYLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMilsshsgcdgrlpslclrsptveiIQEADSSAVVQRVALrvddiplgeQTVAQVFQSAKEQLKWSLLK
msthlsggkvnisLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRnihlkpgslppmeNIANVIFITRPIVKHMDIIADnikrkekekrsdtrridyhlffvprkslLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSGKGPCVQQVWDLTkrlslepknknvnqcktSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSftssglkpkVLEYYKREIIQTYGFQHILTLSNLEQAgllknsqnsgtRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEetqtttssrrnrntqenkMLTFQEASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILrknvekrnvLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSGYLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSAKEQLKWSLLK
MSTHLSGGKVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLeetqtttssrrnrntqenKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSGYLQTrslsissnllaissarscsllsslcFNGIMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSAKEQLKWSLLK
********KVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMDIIADNI***********RRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFP****************VSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLK*******RQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVL********************LTFQEASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSGYLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQ************
*******GKVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKR*****************ISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFP************************LNSGDELFAALRDKIFTGVGPYLSKRA******************************INTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQA******************KMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQTTTSSRRNRNTQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVAL*********QTVAQVFQSGYLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSAKEQLKWSLLK
********KVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAK***********KIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLE************NTQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSGYLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSA**********
*******GKVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAK***************DKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQTTT*************LTFQEASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSGYLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSAKEQLKWSLLK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSTHLSGGKVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQTTTSSRRNRNTQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGLTCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLALDEICDGGIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSGYLQTRSLSISSNLLAISSARSCSLLSSLCFNGIMILSSHSGCDGRLPSLCLRSPTVEIIQEADSSAVVQRVALRVDDIPLGEQTVAQVFQSAKEQLKWSLLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query820 2.2.26 [Sep-21-2011]
Q63615597 Vacuolar protein sorting- yes N/A 0.662 0.909 0.485 1e-146
Q96AX1596 Vacuolar protein sorting- yes N/A 0.692 0.953 0.466 1e-145
Q9D2N9598 Vacuolar protein sorting- yes N/A 0.662 0.908 0.484 1e-145
Q9Y1I2617 Vacuolar protein sorting- yes N/A 0.712 0.946 0.372 1e-103
Q94KJ7592 Vacuolar protein sorting- yes N/A 0.615 0.853 0.317 7e-69
P35604177 Coatomer subunit zeta-1 O no N/A 0.202 0.937 0.646 2e-58
Q5R5F2177 Coatomer subunit zeta-1 O no N/A 0.202 0.937 0.646 2e-58
P61924177 Coatomer subunit zeta-1 O no N/A 0.202 0.937 0.646 2e-58
P61923177 Coatomer subunit zeta-1 O no N/A 0.202 0.937 0.646 2e-58
Q9H267617 Vacuolar protein sorting- no N/A 0.523 0.695 0.307 8e-56
>sp|Q63615|VP33A_RAT Vacuolar protein sorting-associated protein 33A OS=Rattus norvegicus GN=Vps33a PE=1 SV=1 Back     alignment and function desciption
 Score =  520 bits (1340), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/554 (48%), Positives = 380/554 (68%), Gaps = 11/554 (1%)

Query: 1   MSTHLSGGKVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDV 60
           M+ HLS G+VN++++++  R +  E L+KC+G KAI+WD+ L GP GL+A   LL E +V
Sbjct: 1   MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEV 60

Query: 61  KRNIHLKPGSLPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVP 120
           ++   LK GS  P  ++ N+IF+ RP ++ MD+IA+N+    +++R  TR  D+H+ FVP
Sbjct: 61  EKMFTLK-GSRLPAADVKNIIFLVRPRLELMDMIAENVL--SEDRRGPTR--DFHILFVP 115

Query: 121 RKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEV 180
           R+SLLCEQRL++ GVLG+F   E ++ +L PFD DL+SME E A++E +LE D T LY  
Sbjct: 116 RRSLLCEQRLKDLGVLGSFIYREEYSLDLIPFDGDLLSMESESAFKECYLEGDQTSLYHA 175

Query: 181 AQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRN 240
           A+ ++TLQ LYG IP++ GKG C +QV ++  R+  E      +         L+L+DRN
Sbjct: 176 AKGLMTLQALYGTIPQIFGKGECARQVANMMVRMKREFTGSQNSVFPV--FDNLLLLDRN 233

Query: 241 VDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEK-IVSDKKSIILNSG 299
           VD+LTPLA+QLTYEGLIDEI+GI N+  K P  KF+  ++     K + ++ K + LNS 
Sbjct: 234 VDLLTPLASQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGGGGGKDLPTEAKKLQLNSA 293

Query: 300 DELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLL 359
           +EL+A +RDK F  VG  LSK+AK ISA F+ + ++ K+V E+K  V QLPHM   +  L
Sbjct: 294 EELYAEIRDKNFNAVGSVLSKKAKIISAAFE-ERHNAKTVGEIKQFVSQLPHMQAARGSL 352

Query: 360 ANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLIC 419
           ANHT+IAELIKDVT + +F D L  EQE   G+DTDK   YIE+ IA K PL+KVL+L+C
Sbjct: 353 ANHTSIAELIKDVTTSEDFFDKLTVEQEFMSGIDTDKVNNYIEDCIAQKHPLIKVLRLVC 412

Query: 420 MQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMM 479
           +QS  +SGLK KVL+YYKREI+QTYG++HILTL+NLE+AGLLK +Q  G   Y  +RK +
Sbjct: 413 LQSMCNSGLKQKVLDYYKREILQTYGYEHILTLNNLEKAGLLK-AQTGGRNNYPTIRKTL 471

Query: 480 RLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQT-T 538
           RL ++D +E  P DI++V+S YAPLS+RL Q L+R      +++L +LPG   EE Q   
Sbjct: 472 RLWMDDVNEQNPTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQPLP 531

Query: 539 TSSRRNRNTQENKM 552
           T  ++ R   EN++
Sbjct: 532 TGVQKKRQPGENRV 545
May play a role in vesicle-mediated protein trafficking to lysosomal compartments and in membrane docking/fusion reactions of late endosomes/lysosomes.
Rattus norvegicus (taxid: 10116)
>sp|Q96AX1|VP33A_HUMAN Vacuolar protein sorting-associated protein 33A OS=Homo sapiens GN=VPS33A PE=1 SV=1 Back     alignment and function description
>sp|Q9D2N9|VP33A_MOUSE Vacuolar protein sorting-associated protein 33A OS=Mus musculus GN=Vps33a PE=1 SV=2 Back     alignment and function description
>sp|Q9Y1I2|VP33A_DROME Vacuolar protein sorting-associated protein 33A OS=Drosophila melanogaster GN=car PE=1 SV=1 Back     alignment and function description
>sp|Q94KJ7|VPS33_ARATH Vacuolar protein sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=2 SV=1 Back     alignment and function description
>sp|P35604|COPZ1_BOVIN Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5F2|COPZ1_PONAB Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1 Back     alignment and function description
>sp|P61924|COPZ1_MOUSE Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1 Back     alignment and function description
>sp|P61923|COPZ1_HUMAN Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1 Back     alignment and function description
>sp|Q9H267|VP33B_HUMAN Vacuolar protein sorting-associated protein 33B OS=Homo sapiens GN=VPS33B PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query820
156554339629 PREDICTED: vacuolar protein sorting-asso 0.709 0.925 0.526 1e-172
91087855594 PREDICTED: similar to vacuolar protein s 0.696 0.961 0.534 1e-170
48102413609 PREDICTED: vacuolar protein sorting-asso 0.734 0.988 0.507 1e-169
322790192619 hypothetical protein SINV_02075 [Solenop 0.701 0.928 0.524 1e-168
380016630609 PREDICTED: LOW QUALITY PROTEIN: vacuolar 0.731 0.985 0.504 1e-168
307174671608 Vacuolar protein sorting-associated prot 0.714 0.963 0.508 1e-168
350416473608 PREDICTED: vacuolar protein sorting-asso 0.731 0.986 0.5 1e-166
340727968608 PREDICTED: LOW QUALITY PROTEIN: vacuolar 0.731 0.986 0.5 1e-166
383852609606 PREDICTED: vacuolar protein sorting-asso 0.730 0.988 0.495 1e-166
242025172607 vacuolar protein sorting 33A, putative [ 0.725 0.980 0.502 1e-163
>gi|156554339|ref|XP_001603366.1| PREDICTED: vacuolar protein sorting-associated protein 33A-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 315/598 (52%), Positives = 415/598 (69%), Gaps = 16/598 (2%)

Query: 9   KVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKP 68
           ++NI L+Q+ AR Q L LLEKC G KAI+WD++L GP+GLVA   +L E +V +   L  
Sbjct: 31  RLNIGLIQEQARKQLLCLLEKCDGPKAIVWDESLGGPMGLVAKYDILEEHEVIKMYPLVG 90

Query: 69  GSLPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQ 128
           G LPP  ++ NVIFITRP +  MD+IA NI  +E  ++    R ++H+FFVPRKSLLC++
Sbjct: 91  GRLPPA-DVTNVIFITRPHLDLMDLIAQNIHGEEGNRQ----RKEFHIFFVPRKSLLCKK 145

Query: 129 RLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEVAQAIITLQ 188
           +LQ  GV GNF +IE F C+LFPFDNDLVSME+  AYRE++LE DPTCLY+VAQAI ++Q
Sbjct: 146 KLQNRGVFGNFTLIEEFACDLFPFDNDLVSMEISSAYREFYLENDPTCLYQVAQAIQSMQ 205

Query: 189 NLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRNVDVLTPLA 248
            LYG I RV+G+GP   +VWDL +RL  E ++  VN  +   I  L+L+DR+VD+L+PL 
Sbjct: 206 KLYGKISRVTGRGPAASKVWDLMQRLDRETEDTKVNNIQAPVIEHLLLLDRSVDLLSPLV 265

Query: 249 TQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRD 308
           TQLTYEGLIDEIFGI+NTT K P  KF  S+E      +   K+ IILNSG+ELFA +RD
Sbjct: 266 TQLTYEGLIDEIFGINNTTVKLPAEKFLSSDESPTVMSLEKKKQQIILNSGEELFAEIRD 325

Query: 309 KIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAEL 368
           K F GVGP LS++AK IS+Q D + + +KSV E+K  V +LPHM+ TK+ LA HT IAE+
Sbjct: 326 KNFNGVGPVLSRKAKVISSQLD-ERHGDKSVQEIKQFVARLPHMLATKQSLAKHTTIAEM 384

Query: 369 IKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICMQSFTSSGL 428
           IK+VTD+  FLD L  EQE+   +DTDK   YIE+ IA ++PL+KVL+L+C+QS T+SGL
Sbjct: 385 IKEVTDSTNFLDTLQVEQELLNCIDTDKPNSYIEDLIAQQEPLLKVLRLLCIQSITNSGL 444

Query: 429 KPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVEDSSE 488
           K K+L+YYKREIIQTYGFQH+ TL NLE+AGLLK  Q+   RQYT+LRK +RLTVED SE
Sbjct: 445 KQKLLDYYKREIIQTYGFQHLPTLLNLEKAGLLKVQQS--VRQYTVLRKALRLTVEDESE 502

Query: 489 LAPADINFVHSIYAPLSIRLVQRLTREPSIIP-QDLLALLPGAVLEET--QTTTSSRRNR 545
           +AP DI++VHSIYAPLS+RL ++L +        D+L LLPG  +     +  ++ RRN 
Sbjct: 503 IAPKDISYVHSIYAPLSVRLAEQLVQPGGWQGLNDILGLLPGPAISSVSQKAVSTGRRNS 562

Query: 546 NTQENKMLTFQEASL---YTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLF 600
            T E+   T +   L   + I G    +    R L++  D N+   +   K    N F
Sbjct: 563 ITSEDS--TSEPPKLILVFFIGGCTYAEISALRFLSQQEDSNVEFVIGTTKLINGNTF 618

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91087855|ref|XP_968688.1| PREDICTED: similar to vacuolar protein sorting-associated protein 33A [Tribolium castaneum] gi|270012007|gb|EFA08455.1| hypothetical protein TcasGA2_TC006102 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|48102413|ref|XP_395353.1| PREDICTED: vacuolar protein sorting-associated protein 33A [Apis mellifera] Back     alignment and taxonomy information
>gi|322790192|gb|EFZ15191.1| hypothetical protein SINV_02075 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|380016630|ref|XP_003692281.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 33A-like [Apis florea] Back     alignment and taxonomy information
>gi|307174671|gb|EFN65054.1| Vacuolar protein sorting-associated protein 33A [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350416473|ref|XP_003490960.1| PREDICTED: vacuolar protein sorting-associated protein 33A-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340727968|ref|XP_003402305.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 33A-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383852609|ref|XP_003701819.1| PREDICTED: vacuolar protein sorting-associated protein 33A-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|242025172|ref|XP_002433000.1| vacuolar protein sorting 33A, putative [Pediculus humanus corporis] gi|212518509|gb|EEB20262.1| vacuolar protein sorting 33A, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query820
UNIPROTKB|E2R7K6597 VPS33A "Uncharacterized protei 0.635 0.872 0.502 1.8e-133
UNIPROTKB|E1BVA6601 VPS33A "Uncharacterized protei 0.634 0.865 0.494 4.8e-133
UNIPROTKB|A5A780596 VPS33A "Vacuolar protein sorti 0.634 0.872 0.499 2.1e-132
RGD|620643597 Vps33a "vacuolar protein sorti 0.634 0.871 0.494 5.6e-132
MGI|MGI:1924823598 Vps33a "vacuolar protein sorti 0.634 0.869 0.493 1.9e-131
UNIPROTKB|F1MT37596 VPS33A "Uncharacterized protei 0.634 0.872 0.495 2.4e-131
UNIPROTKB|Q96AX1596 VPS33A "Vacuolar protein sorti 0.634 0.872 0.495 6.4e-131
ZFIN|ZDB-GENE-040914-82599 vps33a "vacuolar protein sorti 0.632 0.866 0.483 4.5e-130
UNIPROTKB|H3BMM5538 H3BMM5 "Uncharacterized protei 0.358 0.546 0.540 1.8e-118
UNIPROTKB|D4A3X5598 D4A3X5 "Uncharacterized protei 0.634 0.869 0.436 2.6e-109
UNIPROTKB|E2R7K6 VPS33A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 266/529 (50%), Positives = 366/529 (69%)

Query:     1 MSTHLSGGKVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDV 60
             M+ HLS G+VN++++++  R +  E L+KC+G KAI+WD+ L GP GL+A   LL E +V
Sbjct:     1 MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEV 60

Query:    61 KRNIHLKPGSLPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVP 120
             ++   LK GS  P  ++ N+IF  RP ++ MDIIA+N+    +++R  TR  D+H+ FVP
Sbjct:    61 EKMFTLK-GSRLPAADVKNIIFFVRPRLELMDIIAENVL--SEDRRGPTR--DFHILFVP 115

Query:   121 RKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHLEKDPTCLYEV 180
             R+SLLCEQRL++ GVLG+F   E ++ +L PFD DL+SME E A++E +LE D T LY  
Sbjct:   116 RRSLLCEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSMESEGAFKECYLESDQTSLYHA 175

Query:   181 AQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRN 240
             A+ ++TLQ LYG IP++ GKG C +QV ++  R+  E      N         L+L+DRN
Sbjct:   176 AKGLMTLQALYGTIPQIFGKGECARQVANMMIRMKREFTGSQ-NSI-FPVFDNLLLLDRN 233

Query:   241 VDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGD 300
             VD+LTPLATQLTYEGLIDEI+GI N+  K P  KF+  ++    + + ++ K + LNS +
Sbjct:   234 VDLLTPLATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAE 293

Query:   301 ELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLA 360
             EL+A +RDK F  VG  LSKRAK ISA F+ + ++ K+V E+K  V QLPHM   +  LA
Sbjct:   294 ELYAEIRDKNFNAVGSVLSKRAKVISAAFEVRQHNAKTVGEIKQFVSQLPHMQAARGSLA 353

Query:   361 NHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALPYIENAIAHKKPLMKVLKLICM 420
             NHT+IAELIKDVT + +F D L  EQE   GVDTDK   YIE+ IA K PL+KVL+L+C+
Sbjct:   354 NHTSIAELIKDVTTSEDFFDKLTVEQEFMSGVDTDKVNSYIEDCIAQKHPLIKVLRLVCL 413

Query:   421 QSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMR 480
             QS  +SGLK KVL+YYKREI+QTYG++HILTL NLE+AGLLK  Q  G   Y  +RK +R
Sbjct:   414 QSVCNSGLKQKVLDYYKREILQTYGYEHILTLYNLEKAGLLK-PQTGGRNNYPTIRKTLR 472

Query:   481 LTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPG 529
             L ++D +E  P DI++V+S YAPLS+RL Q L+R      +++L +LPG
Sbjct:   473 LWMDDVNEQNPTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPG 521
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
UNIPROTKB|E1BVA6 VPS33A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A5A780 VPS33A "Vacuolar protein sorting 33A homolog" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|620643 Vps33a "vacuolar protein sorting 33 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1924823 Vps33a "vacuolar protein sorting 33A (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MT37 VPS33A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q96AX1 VPS33A "Vacuolar protein sorting-associated protein 33A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040914-82 vps33a "vacuolar protein sorting 33A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|H3BMM5 H3BMM5 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D4A3X5 D4A3X5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q63615VP33A_RATNo assigned EC number0.48550.66210.9095yesN/A
Q9Y1I2VP33A_DROMENo assigned EC number0.37220.71210.9465yesN/A
Q94KJ7VPS33_ARATHNo assigned EC number0.31750.61580.8530yesN/A
Q9D2N9VP33A_MOUSENo assigned EC number0.48460.66210.9080yesN/A
Q96AX1VP33A_HUMANNo assigned EC number0.46650.69260.9530yesN/A
O17901COPZ_CAEELNo assigned EC number0.59870.19020.8478yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query820
pfam00995554 pfam00995, Sec1, Sec1 family 1e-87
pfam01217142 pfam01217, Clat_adaptor_s, Clathrin adaptor comple 1e-31
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 6e-31
COG5541187 COG5541, RET3, Vesicle coat complex COPI, zeta sub 5e-27
COG5030152 COG5030, APS2, Clathrin adaptor complex, small sub 0.004
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  288 bits (739), Expect = 1e-87
 Identities = 121/532 (22%), Positives = 224/532 (42%), Gaps = 39/532 (7%)

Query: 33  KKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVKHMD 92
            K ++ D      +  V  V  L E  V    +++     P+ ++   I+  RP  +++D
Sbjct: 1   WKVLVLDKETTKILSSVLTVSDLLEHGVTLVENIEN-KREPLPDL-PAIYFIRPTEENVD 58

Query: 93  IIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPF 152
            I D++K          +   YH+FF    S    +RL E  V      ++    +  P 
Sbjct: 59  RIIDDLKNP--------KYKSYHIFFTNSLSRSLLERLAEADVAELVKQVKEIYLDFIPL 110

Query: 153 DNDLVSMEMELAYREYHL-EKDPTCLYEVAQAIITLQNLYGIIPRVSGKGP-CVQQVWDL 210
           ++DL S+E+  ++R+ +  + D + L  +A+ + +L    G IP +  +G    +++ + 
Sbjct: 111 ESDLFSLELPNSFRDLYSPDGDESDLERIAEGLFSLLLTLGEIPIIRYQGNSAAERLAEK 170

Query: 211 TKRL----SLEPKNKNVNQCKTSQISQLILIDRNVDVLTPLATQLTYEGLIDEIFGIHNT 266
             +L           N +   +     L+++DR++D++TPL  Q TY+ ++ ++ GI N 
Sbjct: 171 LAQLLQENLDLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDLLGIKNN 230

Query: 267 TAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRAKFIS 326
                                   KK ++L+  D  +   R   F  V   + K  K   
Sbjct: 231 RVTLDTPGNGGES-----------KKEVVLDENDPFWVENRHLHFPDVAEKIKKELKEYK 279

Query: 327 AQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQ 386
            +    N  +KS+S++K  V++LP     K  L+ H N+AE +       +       EQ
Sbjct: 280 EENKNSNKKKKSISDLKEFVEKLPEFQKEKGKLSLHLNLAEELMKQIKERKLDKVSELEQ 339

Query: 387 EIFLGVDTDKALPYIENAI-AHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQT-Y 444
           ++  G D DK    I   +   K PL   L+L+ + S    G K K LE  ++ ++    
Sbjct: 340 DLATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSLR-DGGKGKDLEDLRKLLLHAGI 398

Query: 445 GFQHILTLSNLEQAGLLKNSQNSGTRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPL 504
           G + +  + NLEQ G L     +    ++ LR  ++L V++ S+  P  +  V S Y PL
Sbjct: 399 GPEALNLVKNLEQLGGL--LSRTSGSNFSDLRDKLKLLVKEVSKSLPKGVKNVLSRYKPL 456

Query: 505 SIRLVQRLTRE-------PSIIPQDLLALLPGAVLEETQTTTSSRRNRNTQE 549
             R+++ L +        P   P+   A  P   L   + T + +  +  Q 
Sbjct: 457 LKRILEDLIKGKLDTDSYPYFDPKLANASGPQGSLRSKRPTAAGQGRQPPQR 508

Length = 554
>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain Back     alignment and domain information
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227828 COG5541, RET3, Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227363 COG5030, APS2, Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 820
KOG1302|consensus600 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
KOG1300|consensus593 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1299|consensus549 100.0
KOG1301|consensus621 100.0
KOG3343|consensus175 100.0
KOG0936|consensus182 100.0
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 99.98
KOG0935|consensus143 99.96
KOG0934|consensus145 99.95
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.94
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 99.94
KOG3343|consensus175 98.69
KOG0938|consensus 446 98.3
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 97.98
KOG2740|consensus 418 97.54
KOG0937|consensus 424 97.1
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 96.94
KOG2635|consensus 512 94.54
PF15001189 AP-5_subunit_s1: AP-5 complex subunit sigma-1 90.75
>KOG1302|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.9e-96  Score=809.72  Aligned_cols=567  Identities=40%  Similarity=0.677  Sum_probs=516.6

Q ss_pred             CCCCCCC--CCCChHHHHHHHHHHHHHHhhcCCCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCC
Q psy8893           1 MSTHLSG--GKVNISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIA   78 (820)
Q Consensus         1 ~~~~~~~--~~~~l~~lre~~r~~L~~~L~~~~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~   78 (820)
                      ||||++.  ...|+..+|+.++++|.++|+++||.|.||+|+.++++|+++.+++.|++|||..+..++.++.|. .++.
T Consensus         1 m~~~~~d~~~~~~l~~lq~~a~~eL~~lLds~pG~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~-~~~~   79 (600)
T KOG1302|consen    1 MAPHLSDLGADLNLQGLQEVARRELISLLDSLPGKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPN-SEVK   79 (600)
T ss_pred             CCCCcccccccchHHHHHHHHHHHHHHHHhcCCCceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcc-cccC
Confidence            8999985  467789999999999999999999999999999999999999999999999999999999887555 5678


Q ss_pred             eEEEEECCChhhHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeE
Q psy8893          79 NVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVS  158 (820)
Q Consensus        79 ~aIY~i~Pt~~~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfs  158 (820)
                      ++|||+||+.++++.|++++++....+    ..+.|||+|+|++...|...|+++|+++. ..+++++|+++|+|.|++|
T Consensus        80 ~~vy~~Rp~~~~~~~ia~~v~~~~~d~----~~r~~~vi~~P~~~~~c~~~Lee~gv~~~-v~~~e~~~~~lpld~DllS  154 (600)
T KOG1302|consen   80 QVVYFVRPRLENMQLIAEHVENVQRDG----FTRDYHVIFVPRRSSLCETLLEEEGVYGL-VLVEEQILDLLPLDGDLLS  154 (600)
T ss_pred             eEEEEEcCchHHHHHHHHHHhhhhhch----hcceeEEEEeccHHHHHHHHHHhcccccc-cccchhhhhhccccccchh
Confidence            899999999999999999999876443    68999999999999999999999999965 6799999999999999999


Q ss_pred             ecCchhhhhhcCCCCccHHHHHHHHHHHHHHHhCCCCeEEecCchhHHHHHHHHHHhcCCCCCCCCccCCCCcceEEEEe
Q psy8893         159 MEMELAYREYHLEKDPTCLYEVAQAIITLQNLYGIIPRVSGKGPCVQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILID  238 (820)
Q Consensus       159 Le~p~~f~~l~~~~d~s~l~~iA~~L~sL~~~~G~~P~I~~~G~~a~~va~~l~~~~~e~~~~~~~~~~~~~~~~LIIlD  238 (820)
                      |++|++|.++|+++|.+.+..+|++|.++|..+|.||.|+++|++|+++++++.++.++....+.  +..++++++|++|
T Consensus       155 lEl~~~~~d~~~~gd~s~l~~va~~l~~LQ~~~G~ip~v~g~G~~ak~~~~l~~~l~~e~~t~n~--~~~~~~~~liLlD  232 (600)
T KOG1302|consen  155 LELPNSFLDLYLDGDQSSLYHVADALVSLQRLYGIIPKVYGKGECAKRVWELLKKLEREEATENN--GDRPEIDHLILLD  232 (600)
T ss_pred             ccchHHHHHHhhccccchhHHHHHHHHHHHHhhCCCcceeeccHHHHHHHHHHHHHhhccccccC--CCccccceEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999887765532  3457889999999


Q ss_pred             cCCCccccccccchhhHHhhhhhcccCCeeeeCCCccCCC-ccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHH
Q psy8893         239 RNVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQS-EEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPY  317 (820)
Q Consensus       239 Rs~DliTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~-~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~  317 (820)
                      |++|++||||||.||+||+||+|||++|.|+++++..... +|+ .. ...+.++.+.++..|++|+++|++||+.|++.
T Consensus       233 R~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~-~~-~~~~~~~~~l~~~~deIy~eiR~k~f~~v~~~  310 (600)
T KOG1302|consen  233 RDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGD-LG-KGKTEKKIVLLYSSDEIYAEIRNKHFNAVGPL  310 (600)
T ss_pred             ccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCC-Cc-cCccccceeccCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998765421 111 00 11133566777789999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCcccc
Q psy8893         318 LSKRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKA  397 (820)
Q Consensus       318 L~~~~~~~~~~~~~~~~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~~~  397 (820)
                      +++++++++.+++. +++.++++||++||++||+++++++.++.|+++|+.+++.+++.+|.+.+.+||+++.|.|.++.
T Consensus       311 lsk~ak~l~~~~~~-r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~~~f~~~l~lE~ell~~~d~~k~  389 (600)
T KOG1302|consen  311 LSKKAKELQAQYET-RRQAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKNEDFRKLLKLEHELLEGNDSDKD  389 (600)
T ss_pred             HHHHHHHHHHHHHh-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCcccc
Confidence            99999999999998 78899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCccHHHHHHHHHhcCCccccCCCCC-------C
Q psy8893         398 LPYIENAIAHKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGT-------R  470 (820)
Q Consensus       398 ~~~Ie~lI~~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~~~~~~l~nL~~lGll~~~~~~~~-------~  470 (820)
                      .++|+|+|....+...+|||+||.|++.+|+++|+|+.||+.++|.||++++.+|.||+++||++++...++       +
T Consensus       390 ~~~IeElI~~~~~~~~vLRLicL~Slt~~Gl~~k~l~~~rr~~lqsYG~ehl~tl~nL~kaGLl~~q~~~~~~~~~~~~~  469 (600)
T KOG1302|consen  390 FDYIEELIYQEVPLNNVLRLICLLSLTCNGLKPKDLDHYRREYLQSYGYEHLLTLQNLEKAGLLREQTGGRKLHTKSSKR  469 (600)
T ss_pred             hHHHHHHHhhcccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccccCCCcchhhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999873321       3


Q ss_pred             cchHhHHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcC-CCCChhhhhhccCCCcccccccccccccc--ccc
Q psy8893         471 QYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTRE-PSIIPQDLLALLPGAVLEETQTTTSSRRN--RNT  547 (820)
Q Consensus       471 ~~~~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~-~~~~~~~~l~~l~g~~~~~~~~~~~~~~~--~~~  547 (820)
                      .|++++|.+++++++.++++|+|++|+||||+||++||+|.++++ +|..+.+.+..+||+.+++.++.++....  +++
T Consensus       470 ~~st~~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i~~l~g~~~e~~~~~~~~~~~~~~~~  549 (600)
T KOG1302|consen  470 NYSTWANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKIRNLPGPHFEEVTWTPSDIASKNNSP  549 (600)
T ss_pred             HHHHHHhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhhHHHHccCCCCchhhcccChhhhcccccCC
Confidence            799999999999999999999999999999999999999999998 99999999999999999888887654322  223


Q ss_pred             ccccccccccceEEEEEEEEEeccchhhHHHHhhCC
Q psy8893         548 QENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDP  583 (820)
Q Consensus       548 ~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k~y~~  583 (820)
                      +.++.++     ||++||+|++|+++.|.+++..+.
T Consensus       550 g~~R~~l-----Vff~GG~T~~EIAalr~l~~~~~~  580 (600)
T KOG1302|consen  550 GALRVTL-----VFFLGGCTYAEIAALRFLAKLEGY  580 (600)
T ss_pred             CCcceEE-----EEEECCccHHHHHHHHHHHhhcCc
Confidence            3357777     999999999999999999998774

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>KOG1300|consensus Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1299|consensus Back     alignment and domain information
>KOG1301|consensus Back     alignment and domain information
>KOG3343|consensus Back     alignment and domain information
>KOG0936|consensus Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0935|consensus Back     alignment and domain information
>KOG0934|consensus Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3343|consensus Back     alignment and domain information
>KOG0938|consensus Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2740|consensus Back     alignment and domain information
>KOG0937|consensus Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635|consensus Back     alignment and domain information
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query820
3tjz_C153 Crystal Structure Of Arf1 Bound To The GammaZETA-Co 7e-53
2hf6_A149 Solution Structure Of Human Zeta-Cop Length = 149 5e-52
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 4e-05
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 5e-05
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 5e-05
>pdb|3TJZ|C Chain C, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 153 Back     alignment and structure 
Iteration: 1

 Score =  205 bits (522), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 97/148 (65%), Positives = 126/148 (85%), Gaps = 1/148 (0%)
Query: 557 EASLYTIKGIAILDNDGHRLLAKYYDPNILSTVKDQKAFEKNLFNKTHRANAEIIMLEGL 616
           E SLYT+K I ILDNDG RL AKYYD +   +VK+QKAFEKN+FNKTHR ++EI +LEGL
Sbjct: 7   EPSLYTVKAILILDNDGDRLFAKYYD-DTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGL 65
Query: 617 TCVYKSNVDLFFYVMGSSHENELILMSVLNCLYDAISQILRKNVEKRNVLDNLDIVMLAL 676
           T VYKS++DL+FYV+GSS+ENEL+LM+VLNCL+D++SQ+LRKNVEKR +L+N++ + LA+
Sbjct: 66  TVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAV 125
Query: 677 DEICDGGIIQEADSSAVVQRVALRVDDI 704
           DEI DGG+I E+D   VV RVALR +D+
Sbjct: 126 DEIVDGGVILESDPQQVVHRVALRGEDV 153
>pdb|2HF6|A Chain A, Solution Structure Of Human Zeta-Cop Length = 149 Back     alignment and structure
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query820
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 5e-66
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 2e-64
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 2e-57
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 3e-57
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 2e-50
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 4e-47
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 2e-25
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 2e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1w63_M 423 Adaptor-related protein complex 1, MU 1 subunit; e 8e-12
2vgl_M 435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 8e-12
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
 Score =  229 bits (585), Expect = 5e-66
 Identities = 75/573 (13%), Positives = 195/573 (34%), Gaps = 47/573 (8%)

Query: 12  ISLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSL 71
            + V +      +  ++K +  K +I D      V     +  +    +     +     
Sbjct: 4   KTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRR-R 62

Query: 72  PPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQ 131
            P+  +  V  I  P  + +  +  + +  +  +         H+FF         + L 
Sbjct: 63  EPLPLLEAVYLI-TPTEESVKCLMADFQNPDNPQYRG-----AHIFFTEACPEELFKELC 116

Query: 132 ENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYHL----EKDPTCLYEVAQAIITL 187
           ++        ++       P+++ + S++    ++ Y+     +         A+ I TL
Sbjct: 117 KSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATL 176

Query: 188 QNLYGIIPRVSGKGP---CVQQVWDLTKRL-SLEPKNKNVNQCKTSQISQLILIDRNVDV 243
               G  P V  +            + ++L +    +  + +      SQL+++DR  D 
Sbjct: 177 CATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDP 236

Query: 244 LTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELF 303
           ++PL  +LT++ +  ++  I N   K+     ++             +K ++L+  D+L+
Sbjct: 237 ISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVP-----------EKEVLLDEKDDLW 285

Query: 304 AALRDKIFTGVGPYLSKRAKFISAQFDT-QNYHEKSVSEMKTLVQQLPHMINTKKLLANH 362
             +R +    V   ++K+ K  + +        +  + ++  +++++P         + H
Sbjct: 286 VEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTH 345

Query: 363 TNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALP------YIENAIAHKKPLMKVLK 416
            ++AE                 EQ++ +G D D           +   +  K      ++
Sbjct: 346 LHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIR 404

Query: 417 LICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYTLLR 476
           +I +      G+  + L    +        +    +++++  G+          Q    R
Sbjct: 405 IILLYIIHKGGISEENLAKLVQH--AHIPAEEKWIINDMQNLGVPI-------IQDGGRR 455

Query: 477 KMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQ 536
           K+ +     + +   AD  +  S + P    +++    E  +  +    L  G      Q
Sbjct: 456 KIPQPYHTHNRKERQADHTYQMSRWTPYMKDIMEAA-VEDKLDTRHYPFLNGGGPRPSCQ 514

Query: 537 TTTSSRRNRNTQENKMLT---FQEASLYTIKGI 566
              S R     ++    +        ++ + GI
Sbjct: 515 QPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGI 547
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query820
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.94
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.94
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.88
2vgl_M 435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 99.81
1w63_M 423 Adaptor-related protein complex 1, MU 1 subunit; e 99.8
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 97.05
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 92.24
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 90.96
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
Probab=100.00  E-value=5.9e-84  Score=767.93  Aligned_cols=547  Identities=12%  Similarity=0.174  Sum_probs=443.1

Q ss_pred             HHHHHHHHHHH-HHhhcC---CCceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEEECCChh
Q psy8893          14 LVQDFARTQFL-ELLEKC---SGKKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVK   89 (820)
Q Consensus        14 ~lre~~r~~L~-~~L~~~---~g~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~i~Pt~~   89 (820)
                      +||+.+|++|+ ++| ++   +|||+||+|+.+.++||+++++++|+++||++++.|++.|.|. ++ .+|||||+|+.+
T Consensus         3 ~l~~~~r~~ll~~~l-~v~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~-~~-~~aIyfv~Pt~~   79 (650)
T 2xhe_A            3 SLKSAVKTVLTNSLR-SVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVL-PQ-FHGVYFIEPTEE   79 (650)
T ss_dssp             CHHHHHHHHHHHHHT-TCCCCSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCB-TT-SEEEEEECSCHH
T ss_pred             cHHHHHHHHHHHHHh-ccccCCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCC-CC-CCEEEEEcCCHH
Confidence            48999999999 999 88   7999999999999999999999999999999999999988764 65 479999999999


Q ss_pred             hHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCchhhhhhc
Q psy8893          90 HMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYH  169 (820)
Q Consensus        90 ~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~~f~~l~  169 (820)
                      ++++|++|+++...      .|+.|||+|+|.++...++.|+++++.+.+.++.|+++||+|+|+|+|||++|++|..+|
T Consensus        80 ni~~i~~d~~~~~~------~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~  153 (650)
T 2xhe_A           80 NLDYVIRDFADRTP------TYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYY  153 (650)
T ss_dssp             HHHHHHHHHHSSSC------SBSCEEEEESSCCCHHHHHHHHHSGGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHH
T ss_pred             HHHHHHHHHhhcCC------CcceEEEEeCCCCCHHHHHHHHhcchhhhcCEEEEEccceEeccCCEEEeCCchHHHHhc
Confidence            99999999998421      699999999999999999999999999988899999999999999999999999999999


Q ss_pred             C-CCCccHHHHHHHHHHHHHHHhCCCCeEEecCc---hhHHHHHHHHH-Hhc--CCCCCCCCccCCCCcceEEEEecCCC
Q psy8893         170 L-EKDPTCLYEVAQAIITLQNLYGIIPRVSGKGP---CVQQVWDLTKR-LSL--EPKNKNVNQCKTSQISQLILIDRNVD  242 (820)
Q Consensus       170 ~-~~d~s~l~~iA~~L~sL~~~~G~~P~I~~~G~---~a~~va~~l~~-~~~--e~~~~~~~~~~~~~~~~LIIlDRs~D  242 (820)
                      . .++.+.++.+|++|+++|.++|.+|.|||.|+   .|++||+++.+ +..  +...  ....+...++.|||+||++|
T Consensus       154 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~l~~~~~~~~--~~~~~~~~~~~LiIlDR~~D  231 (650)
T 2xhe_A          154 GSRSSSYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGL--INAREGKLKSQFLILDRAVD  231 (650)
T ss_dssp             STTGGGCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHHHHHHHTTTS--CCCCCCSSCCEEEEECGGGC
T ss_pred             CCccchHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHHHHhhccCCc--ccCCCCCCCCEEEEEcCCcc
Confidence            5 56788999999999999999999999999885   69999999985 432  2111  11123456899999999999


Q ss_pred             ccccccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHHHHHHH
Q psy8893         243 VLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLSKRA  322 (820)
Q Consensus       243 liTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~L~~~~  322 (820)
                      ++|||+||||||||+||+|||++|+|+++....   .+       ..+++++.||++|++|.++||+||++|++.|++++
T Consensus       232 ~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~---~~-------~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~  301 (650)
T 2xhe_A          232 LKSPLVHELTYQAAAYDLLNIENDIYSYSTVDA---GG-------REQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSF  301 (650)
T ss_dssp             SSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCS---SC-------CSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHHH
T ss_pred             hhhhccccchHHHHHHHHhcCcCCEEEEEecCC---CC-------CccceEEeCCCCCHHHHHHhccCHHHHHHHHHHHH
Confidence            999999999999999999999999999975421   11       12368899999999999999999999999999999


Q ss_pred             HHHHHHHhhhc------cccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCc--
Q psy8893         323 KFISAQFDTQN------YHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDT--  394 (820)
Q Consensus       323 ~~~~~~~~~~~------~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~--  394 (820)
                      ++|++++++.+      .+..+++||++||++||+++++++.++.|++||++|++.+++ .|.+++++||++++|.|.  
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g  380 (650)
T 2xhe_A          302 DEFCVSARRLQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDG  380 (650)
T ss_dssp             HHHHHHHHHTTTCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCSSC
T ss_pred             HHHHHHhhhhccccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccc
Confidence            99999887622      145689999999999999999999999999999999999999 999999999999999876  


Q ss_pred             ---ccchHHHHHHHh-CCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCc--cHHHHHHHHHhcCCccccCCCC
Q psy8893         395 ---DKALPYIENAIA-HKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGF--QHILTLSNLEQAGLLKNSQNSG  468 (820)
Q Consensus       395 ---~~~~~~Ie~lI~-~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~--~~~~~l~nL~~lGll~~~~~~~  468 (820)
                         +...+.|+++|. ...+..|+|||+|||+++++|+++++++    +++++||+  +++.++.||+++|+...+...+
T Consensus       381 ~~~~~~~~~i~~ll~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~----~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~  456 (650)
T 2xhe_A          381 NKVRDFIGEVASVVVDRRVSTEDKLRCLMLCVLAKNGTSSHELN----NLLDNANIATPSRSAIYNLEMLGATVVADRRG  456 (650)
T ss_dssp             CBCCCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHTCBCHHHHH----HHHHHTTCCGGGGHHHHGGGGGTCCCBGGGCC
T ss_pred             cchhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCHHHHH----HHHHHcCCCHHHHHHHHHHHHhCCcccccccc
Confidence               335788888886 5789999999999999999999999986    68999999  8999999999999988765212


Q ss_pred             CCcchHhHHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcC-----CCCChhhhhhc---------------cC
Q psy8893         469 TRQYTLLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTRE-----PSIIPQDLLAL---------------LP  528 (820)
Q Consensus       469 ~~~~~~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~-----~~~~~~~~l~~---------------l~  528 (820)
                      ++.|...+       ++      ++.+|+||||+|+++|+||.++++     +|+.++.-...               .+
T Consensus       457 ~~~~~~~r-------k~------~~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  523 (650)
T 2xhe_A          457 RKPKTMKR-------IE------RDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGP  523 (650)
T ss_dssp             CCCCCCCC-------CC------CCCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC-------------
T ss_pred             cccccccc-------cc------cCCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCccccccccccccccccccc
Confidence            22232111       01      223899999999999999999987     46544321111               11


Q ss_pred             CCccc-ccccccccc--------------cccc-----cccccccccccceEEEEEEEEEeccchhhHHHHhhCCCCC--
Q psy8893         529 GAVLE-ETQTTTSSR--------------RNRN-----TQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDPNIL--  586 (820)
Q Consensus       529 g~~~~-~~~~~~~~~--------------~~~~-----~~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k~y~~~~~--  586 (820)
                      ++... ...|.....              .+.+     ..++++++     ||+|||+||.|+++.|.+++..+.+++  
T Consensus       524 ~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vi-----VF~iGGvTysEi~al~~ls~~~~~~viig  598 (650)
T 2xhe_A          524 ATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLF-----VFINGTVSYNEIRCAYEVSQSSGYEVYIG  598 (650)
T ss_dssp             --------------------------------------CCCSCEEE-----EEEEEEECHHHHHHHHHHHTTSSSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCCCEEE-----EEEECCCCHHHHHHHHHHHhcCCCEEEEe
Confidence            11100 001110000              0000     12234455     999999999999999999987654432  


Q ss_pred             -CChHHHHHHHHHHHHHhh
Q psy8893         587 -STVKDQKAFEKNLFNKTH  604 (820)
Q Consensus       587 -~~~~~q~~~e~~i~~~~~  604 (820)
                       ++.-.-..|.+++-....
T Consensus       599 sT~Iln~~~fl~~l~~l~~  617 (650)
T 2xhe_A          599 AHNIATPAEFVELVSLLDK  617 (650)
T ss_dssp             EEEECCHHHHHHHHHTTTC
T ss_pred             eCCcCCHHHHHHHHHHcCC
Confidence             122234577777765543
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 820
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 2e-65
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 3e-64
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 9e-49
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 2e-26
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 6e-23
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  226 bits (578), Expect = 2e-65
 Identities = 76/576 (13%), Positives = 196/576 (34%), Gaps = 55/576 (9%)

Query: 13  SLVQDFARTQFLELLEKCSGKKAIIWDDALAGPVGLVANVQLLNERDVKR--NIHLKPGS 70
           + V +      +  ++K +  K +I D      V     +  +    +    +I+ +   
Sbjct: 4   TAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREP 63

Query: 71  LPPMENIANVIFITRPIVKHMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRL 130
           LP +      +++  P  + +  +  + +  +  +         H+FF         + L
Sbjct: 64  LPLL----EAVYLITPTEESVKCLMADFQNPDNPQYRG-----AHIFFTEACPEELFKEL 114

Query: 131 QENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYH----LEKDPTCLYEVAQAIIT 186
            ++        ++       P+++ + S++    ++ Y+     +         A+ I T
Sbjct: 115 CKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIAT 174

Query: 187 LQNLYGIIPRVSGKGPC------VQQVWDLTKRLSLEPKNKNVNQCKTSQISQLILIDRN 240
           L    G  P V  +          Q V         +              SQL+++DR 
Sbjct: 175 LCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEG--PQKDRSQLLILDRG 232

Query: 241 VDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGD 300
            D ++PL  +LT++ +  ++  I N   K+     ++             +K ++L+  D
Sbjct: 233 FDPISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVP-----------EKEVLLDEKD 281

Query: 301 ELFAALRDKIFTGVGPYLSKRAKFISAQFDTQNYHEK-SVSEMKTLVQQLPHMINTKKLL 359
           +L+  +R +    V   ++K+ K  + +       +K  + ++  +++++P         
Sbjct: 282 DLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKY 341

Query: 360 ANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDKALP------YIENAIAHKKPLMK 413
           + H ++AE                 EQ++ +G D D           +   +  K     
Sbjct: 342 STHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYD 400

Query: 414 VLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYT 473
            +++I +      G+  + L    +        +    +++++  G+             
Sbjct: 401 KIRIILLYIIHKGGISEENLAKLVQH--AHIPAEEKWIINDMQNLGVPIIQDGG------ 452

Query: 474 LLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLE 533
             RK+ +     + +   AD  +  S + P    +++    E  +  +    L  G    
Sbjct: 453 -RRKIPQPYHTHNRKERQADHTYQMSRWTPYMKDIMEAA-VEDKLDTRHYPFLNGGGPRP 510

Query: 534 ETQTTTSSRR---NRNTQENKMLTFQEASLYTIKGI 566
             Q   S R    +++  +    +     ++ + GI
Sbjct: 511 SCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGI 546
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query820
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.93
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 99.83
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 95.3
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 90.86
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.9e-77  Score=703.86  Aligned_cols=546  Identities=13%  Similarity=0.199  Sum_probs=427.7

Q ss_pred             HHHHHHHHHHHH-HhhcCCC---ceEEEEcCCcccchhcccChhHHhhcCceEEEecCCCCCCCCCCCCeEEEEECCChh
Q psy8893          14 LVQDFARTQFLE-LLEKCSG---KKAIIWDDALAGPVGLVANVQLLNERDVKRNIHLKPGSLPPMENIANVIFITRPIVK   89 (820)
Q Consensus        14 ~lre~~r~~L~~-~L~~~~g---~KvLv~D~~~~~iLs~i~~~s~L~e~gV~~i~~L~~~r~p~~~~~~~aIY~i~Pt~~   89 (820)
                      +||+++++++++ ++++++|   |||||+|+.++++||+++++++|++|||++++.|+..|.|. ++ .+|||||+|+.+
T Consensus         2 ~~~~~~~~~~l~~~~~~v~~~~~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~-~~-~~aIy~i~Pt~~   79 (589)
T d1dn1a_           2 GLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPL-PS-LEAVYLITPSEK   79 (589)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCC-TT-SEEEEEECCCHH
T ss_pred             ChHHHHHHHHHHHHHhccCCCCccEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccCCCCCC-CC-CCEEEEEcCCHH
Confidence            589999999875 8998864   99999999999999999999999999999999999888774 65 479999999999


Q ss_pred             hHHHHHHHHhhhhhcccccCCCccEEEEEeCCCCHHHHHHHHhcCccCCcceEEEEeeeeeeecCCeeEecCchhhhhhc
Q psy8893          90 HMDIIADNIKRKEKEKRSDTRRIDYHLFFVPRKSLLCEQRLQENGVLGNFNIIEAFTCNLFPFDNDLVSMEMELAYREYH  169 (820)
Q Consensus        90 ~i~~I~~d~~~~~~~~~~~~~y~~~~I~f~p~~~~~~~~~L~~~~v~~~i~~i~e~~ldfipld~dlfsLe~p~~f~~l~  169 (820)
                      ++++|++|++++...     .|+.|||+|+|.++..+++.|+++++++.+.++.|+++||+|+|+|+|||++|++|..+|
T Consensus        80 ni~~i~~d~~~~~~~-----~Y~~~~i~F~~~~~~~~le~La~~~~~~~i~~v~e~~~df~~le~d~fsl~~~~~~~~~~  154 (589)
T d1dn1a_          80 SVHSLISDFKDPPTA-----KYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFY  154 (589)
T ss_dssp             HHHHHHHTTSSGGGC-----CCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHH
T ss_pred             HHHHHHHHhcchhhc-----ccCeEEEEECCCCCHHHHHHHHhcCccccCCeEEEEecceeeCCCCEEEecCCchHHHhc
Confidence            999999999876532     699999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC----CccHHHHHHHHHHHHHHHhCCCCeEEecCc--hhHHHHHHHHHH----hcCCCCCCCCccCCCCcceEEEEec
Q psy8893         170 LEK----DPTCLYEVAQAIITLQNLYGIIPRVSGKGP--CVQQVWDLTKRL----SLEPKNKNVNQCKTSQISQLILIDR  239 (820)
Q Consensus       170 ~~~----d~s~l~~iA~~L~sL~~~~G~~P~I~~~G~--~a~~va~~l~~~----~~e~~~~~~~~~~~~~~~~LIIlDR  239 (820)
                      .++    +.+.++++|++|+++|.++|.+|.|||.|+  .|+.+|+++.++    .++....+.  ...+++++|||+||
T Consensus       155 ~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~la~~l~~~l~~~~~~~~~~~~--~~~~~~~~LiIlDR  232 (589)
T d1dn1a_         155 SPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGE--GPDKARSQLLILDR  232 (589)
T ss_dssp             CGGGTTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTC--STTGGGCEEEEEEG
T ss_pred             CCcccchhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHHHHHHHHHhcCcccCC--CcccCCceEEEecc
Confidence            744    456789999999999999999999999884  466777766543    333332211  34466789999999


Q ss_pred             CCCccccccccchhhHHhhhhhcccCCeeeeCCCccCCCccccccccccCcceEEEeCCCChHHHHhhcCCHhHHHHHHH
Q psy8893         240 NVDVLTPLATQLTYEGLIDEIFGIHNTTAKFPGAKFSQSEEDSNFEKIVSDKKSIILNSGDELFAALRDKIFTGVGPYLS  319 (820)
Q Consensus       240 s~DliTPLlh~~TYqaLlddl~~I~~g~v~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~i~~e~R~~h~~~v~~~L~  319 (820)
                      ++|++|||+||||||||+||+|||++|.|+++....    +       ..+++++.++++|++|.++||+||++|++.|.
T Consensus       233 ~~DliTPLlh~~TYq~li~e~~gI~~n~v~i~~~~~----~-------~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~i~  301 (589)
T d1dn1a_         233 GFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGI----G-------EARVKEVLLDEDDDLWIALRHKHIAEVSQEVT  301 (589)
T ss_dssp             GGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSS----S-------SCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred             CccccccccccccHHHHHHHHhcccCCeEEecCCCC----C-------cccceEeecCCCcHHHHHhhcccHHHHHHHHH
Confidence            999999999999999999999999999999976421    1       11257788999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCHHHHHHHHHHchhHHHHhhHHHHHHHHHHHHHHhhChhHHHHHHHHHHhhhcCCCccc---
Q psy8893         320 KRAKFISAQFDTQNYHEKSVSEMKTLVQQLPHMINTKKLLANHTNIAELIKDVTDTAEFLDALHAEQEIFLGVDTDK---  396 (820)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~si~em~~~v~~Lp~~~~~~~~l~~H~~ia~~i~~~~~~~~l~~~~~lEq~il~g~d~~~---  396 (820)
                      +++++++++++..+.+..+++||+++|+++|+++++++.++.|++||++|++.++ +.|.+++++||++++|.+.++   
T Consensus       302 ~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~-~~l~~~~~~Eq~i~~~~~~~~~~~  380 (589)
T d1dn1a_         302 RSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKI  380 (589)
T ss_dssp             HHHHHHHHHTTC-------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHSBCSSCCBC
T ss_pred             HHHHHHHHHhhhhccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCcchhhH
Confidence            9999999987763334568899999999999999999999999999999999996 689999999999999876532   


Q ss_pred             --chHHHHHHHh-CCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhCccHHHHHHHHHhcCCccccCCCCCCcch
Q psy8893         397 --ALPYIENAIA-HKKPLMKVLKLICMQSFTSSGLKPKVLEYYKREIIQTYGFQHILTLSNLEQAGLLKNSQNSGTRQYT  473 (820)
Q Consensus       397 --~~~~Ie~lI~-~~~~~~d~LRLl~Lysl~~~Gl~~k~~~~~k~~l~~~~G~~~~~~l~nL~~lGll~~~~~~~~~~~~  473 (820)
                        ....+.+++. ...+..++|||+|||+++++|+++++++.+++.+.  ++.+++..+.+|+++|+...+.+..     
T Consensus       381 ~~~~~~i~~~l~~~~~~~~d~LRL~~l~~l~~~g~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lg~~~~~~~~~-----  453 (589)
T d1dn1a_         381 KDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKLIQHAQ--IPPEDSEIITNMAHLGVPIVTDSTL-----  453 (589)
T ss_dssp             CCTHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCBCHHHHHHHHHHHT--CCHHHHHHHHHGGGGTCCCBCCCGG-----
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHcC--CChHHHHHHHHHHHhCCccccCchh-----
Confidence              4566666654 57899999999999999999999999986655441  3446788999999999877654211     


Q ss_pred             HhHHhhcccccccCCCCCCCccccccccchhHHHHHHHHhcCCCCChhhhhhccCCCcccccccc-ccc--------ccc
Q psy8893         474 LLRKMMRLTVEDSSELAPADINFVHSIYAPLSIRLVQRLTREPSIIPQDLLALLPGAVLEETQTT-TSS--------RRN  544 (820)
Q Consensus       474 ~i~k~l~l~~~~~~~~~~~d~~y~~sgY~Pl~~rlve~l~~~~~~~~~~~l~~l~g~~~~~~~~~-~~~--------~~~  544 (820)
                        .+..+.    .....+.+.+|+|+||+|+++|+++.+.++.+..-  .++.+.+......... ...        ...
T Consensus       454 --~~~~~~----~~~~~~~~~~~~~s~y~Pl~~~l~~~~~~~~l~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (589)
T d1dn1a_         454 --RRRSKP----ERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTK--HYPYISTRSSASFSTTAVSARYGHWHKNKAP  525 (589)
T ss_dssp             --GCCCCC----CCCCCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTT--TSCCSSCC-----------------------
T ss_pred             --hccccc----ccccCCcccccccccchHHHHHHHHHHHhCCCCcc--cCcccCCCccccccccccccccccccccCCC
Confidence              111111    11234567899999999999999999998754321  1222222110000000 000        000


Q ss_pred             cccccccccccccceEEEEEEEEEeccchhhHHHHhhCC-CCC---CChHHHHHHHHHHH
Q psy8893         545 RNTQENKMLTFQEASLYTIKGIAILDNDGHRLLAKYYDP-NIL---STVKDQKAFEKNLF  600 (820)
Q Consensus       545 ~~~~~~k~i~~~~~~v~~Iggi~~~e~~g~r~l~k~y~~-~~~---~~~~~q~~~e~~i~  600 (820)
                      .....+++++     ||+|||+||.|.+..|.+++.++. .++   +..-.-.+|..++-
T Consensus       526 ~~~~~~~~vi-----VF~vGGvTy~E~~~l~~l~~~~~~~~iiiGsT~iln~~~fl~~l~  580 (589)
T d1dn1a_         526 GEYRSGPRLI-----IFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLK  580 (589)
T ss_dssp             ---CCCCEEE-----EEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHT
T ss_pred             CcCCCCCEEE-----EEEECCcCHHHHHHHHHHHHHcCCceEEEEeCCEecHHHHHHHHH
Confidence            1111223444     999999999999999999988764 332   22222345665543
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure