Psyllid ID: psy88

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHT
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEcccccccEEEEccccccccccccccccccccccccccEEEEEEEcccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccEEcccccEEEEEEEEccccccEccEEEcccccccHHHcccEcccEccEccccEEEEEEEccccEEEEEccc
Coil and Loop (DISEMBL)
mlypknvcegdrVVVDVRNsmdglentihwhgihqrgtqysdgvpfvtqcpitqgntfryqftanagthfwhaht
Flexible Loop (DISEMBL)
mlypknvcegdrVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHT
Low Complexity Region (SEG)
MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHT
Disordered region (IsUnstruct)
******VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWH***
Disordered Region (DISOPRED)
MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHT
Disordered Region (DISEMBL)
MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHT
Disordered Region (DISPRO)
*LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAHT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
P38993	636	Iron transport multicoppe	yes	N/A	0.92	0.108	0.478	5e-13
Q96WT3	635	Iron transport multicoppe	yes	N/A	0.92	0.108	0.464	6e-13
P14133	587	L-ascorbate oxidase OS=Cu	N/A	N/A	0.866	0.110	0.484	5e-12
A2Y9C5	590	Putative laccase-19 OS=Or	N/A	N/A	0.893	0.113	0.513	2e-11
Q2R0L2	590	Laccase-19 OS=Oryza sativ	no	N/A	0.893	0.113	0.513	2e-11
Q941X2	567	Laccase-3 OS=Oryza sativa	no	N/A	0.92	0.121	0.5	2e-11
P37064	552	L-ascorbate oxidase OS=Cu	N/A	N/A	0.866	0.117	0.5	3e-11
Q2QYS3	567	Laccase-23 OS=Oryza sativ	no	N/A	0.893	0.118	0.458	4e-11
P24792	579	L-ascorbate oxidase OS=Cu	N/A	N/A	0.866	0.112	0.5	5e-11
Q2RBK2	567	Putative laccase-17 OS=Or	no	N/A	0.893	0.118	0.458	5e-11

>sp|P38993|FET3_YEAST Iron transport multicopper oxidase FET3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FET3 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-- 64
           V +GDRV + + N M+    ++H+HG+ Q GT   DGVPF+TQCPI  G+T  Y FT   
Sbjct: 59  VNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDY 118

Query: 65  NAGTHFWHAHT 75
           N GT+++H+HT
Sbjct: 119 NVGTYWYHSHT 129

Iron transport multicopper ferroxidase required for Fe(2+) ion high affinity uptake. Required to oxidize Fe(2+) and release it from the transporter. Essential component of copper-dependent iron transport.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q96WT3|FET3_CANGA Iron transport multicopper oxidase FET3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FET3 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-- 64
           V +GDR+ V + N  +    ++H+HG+ QRGT   DGVP++TQCPI  G+T  Y FT   
Sbjct: 55  VAKGDRIEVYLTNGFNNTNTSLHFHGMFQRGTNQMDGVPYLTQCPIGPGDTMLYNFTVDE 114

Query: 65  NAGTHFWHAHT 75
           N GT+++H+HT
Sbjct: 115 NVGTYWYHSHT 125

Iron transport multicopper ferroxidase required for Fe(2+) high affinity uptake. Required to oxidize Fe(2+) and release it from the transporter. Essential component of copper-dependent iron transport.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P14133|ASO_CUCSA L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AGT 68
           GD VVV++ N +      IHWHGI QRGT ++DG   ++QC I  G TF Y+F  + AGT
Sbjct: 76  GDIVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFTYRFVVDKAGT 135

Query: 69  HFWHAH 74
           +F+H H
Sbjct: 136 YFYHGH 141

May be involved in a redox system involving ascorbic acid.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 3

>sp|A2Y9C5|LAC19_ORYSI Putative laccase-19 OS=Oryza sativa subsp. indica GN=LAC19 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 5/72 (6%)

Query: 6   NVCEGDRVVVDVRNSMD-GLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGN--TFRYQF 62
           +V EGD VVV V N +  GL  TIHWHG+ Q  + ++DG  FVT+CPI  GN  T+R+  
Sbjct: 64  DVMEGDTVVVHVINKLPFGL--TIHWHGVRQMRSCWADGAGFVTECPIPPGNEHTYRFNV 121

Query: 63  TANAGTHFWHAH 74
           T   GT +WHAH
Sbjct: 122 TGQVGTLWWHAH 133

Lignin degradation and detoxification of lignin-derived products.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|Q2R0L2|LAC19_ORYSJ Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC19 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 5/72 (6%)

Query: 6   NVCEGDRVVVDVRNSMD-GLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGN--TFRYQF 62
           +V EGD VVV V N +  GL  TIHWHG+ Q  + ++DG  FVT+CPI  GN  T+R+  
Sbjct: 64  DVTEGDTVVVHVINKLPFGL--TIHWHGVRQMRSCWADGAGFVTECPIPPGNEHTYRFNV 121

Query: 63  TANAGTHFWHAH 74
           T   GT +WHAH
Sbjct: 122 TGQVGTLWWHAH 133

Lignin degradation and detoxification of lignin-derived products.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|Q941X2|LAC3_ORYSJ Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 6   NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
            V EGD VV++V N       TIHWHGI Q  T ++DG  FVTQCPI  G +++Y+FT  
Sbjct: 60  EVREGDTVVINVVNHAQ-YNVTIHWHGIRQFRTGWADGPEFVTQCPIKPGGSYKYRFTIE 118

Query: 66  A--GTHFWHAHT 75
              GT +WHAH+
Sbjct: 119 GQEGTLWWHAHS 130

Lignin degradation and detoxification of lignin-derived products.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|P37064|ASO_CUCPM L-ascorbate oxidase OS=Cucurbita pepo var. melopepo PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-NAGT 68
           GD VVV++ N +      IHWHGI QRGT ++DG   ++QC I  G TF Y FT  N GT
Sbjct: 41  GDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGT 100

Query: 69  HFWHAH 74
            F+H H
Sbjct: 101 FFYHGH 106

May be involved in a redox system involving ascorbic acid.

Cucurbita pepo var. melopepo (taxid: 3665)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 3

>sp|Q2QYS3|LAC23_ORYSJ Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC23 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 5/72 (6%)

Query: 7   VCEGDRVVVDVRNSMDGLEN-TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-- 63
           + EGD +++++ N   G  N T+HWHG+ Q  T +SDG  +VTQCP+  G ++RY+FT  
Sbjct: 59  IKEGDSLIINLINR--GRYNVTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVA 116

Query: 64  ANAGTHFWHAHT 75
           A  GT +WHAH+
Sbjct: 117 AQEGTLWWHAHS 128

Lignin degradation and detoxification of lignin-derived products.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

>sp|P24792|ASO_CUCMA L-ascorbate oxidase OS=Cucurbita maxima GN=AAO PE=1 SV=2

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-NAGT 68
           GD VVV++ N +      IHWHGI QRGT ++DG   ++QC I  G TF Y FT  N GT
Sbjct: 71  GDTVVVELINKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGT 130

Query: 69  HFWHAH 74
            F+H H
Sbjct: 131 FFYHGH 136

May be involved in a redox system involving ascorbic acid.

Cucurbita maxima (taxid: 3661)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 3

>sp|Q2RBK2|LAC17_ORYSJ Putative laccase-17 OS=Oryza sativa subsp. japonica GN=LAC17 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 5/72 (6%)

Query: 7   VCEGDRVVVDVRNSMDGLEN-TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-- 63
           + EGD +++++ N   G  N T+HWHG+ Q  T +SDG  +VTQCP+  G ++RY+FT  
Sbjct: 59  INEGDSLIINLINR--GRYNMTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVA 116

Query: 64  ANAGTHFWHAHT 75
           A  GT +WHAH+
Sbjct: 117 AQEGTLWWHAHS 128

Lignin degradation and detoxification of lignin-derived products.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 0

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
325302574	725	laccase 2 [Riptortus pedestris]	0.92	0.095	0.797	1e-28
325302576	729	laccase 2 [Megacopta punctatissima]	0.92	0.094	0.828	1e-27
61658224	753	laccase-2 isoform A [Anopheles gambiae]	0.92	0.091	0.826	2e-27
63079853	747	laccase-like multicopper oxidase 1 [Aede	0.92	0.092	0.826	2e-27
61658226	755	laccase-2 isoform B [Anopheles gambiae]	0.92	0.091	0.826	2e-27
312373563	795	hypothetical protein AND_17284 [Anophele	0.92	0.086	0.826	2e-27
158295492	754	AGAP006176-PB [Anopheles gambiae str. PE	0.92	0.091	0.826	2e-27
157116019	752	multicopper oxidase [Aedes aegypti] gi|1	0.92	0.091	0.826	2e-27
158295490	756	AGAP006176-PA [Anopheles gambiae str. PE	0.92	0.091	0.826	2e-27
195028474	1023	GH21733 [Drosophila grimshawi] gi|193903	0.92	0.067	0.797	4e-27

>gi|325302574|dbj|BAJ83487.1| laccase 2 [Riptortus pedestris]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 64/69 (92%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
           VCEGD+V++D+RN+M GLE +IHWHGIHQRGTQ SDGVPFVTQCPI +GNTFRYQ+ AN+
Sbjct: 190 VCEGDKVIIDLRNAMQGLELSIHWHGIHQRGTQISDGVPFVTQCPIPEGNTFRYQWVANS 249

Query: 67  GTHFWHAHT 75
           GTHFWHAHT
Sbjct: 250 GTHFWHAHT 258

Source: Riptortus pedestris

Species: Riptortus pedestris

Genus: Riptortus

Family: Alydidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325302576|dbj|BAJ83488.1| laccase 2 [Megacopta punctatissima]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/70 (82%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
           VCEGD+VV+DV N+M GLE TIHWHGIHQRGTQ SDGVPFVTQCPI++GNTFRYQ+ A N
Sbjct: 192 VCEGDKVVIDVHNAMQGLELTIHWHGIHQRGTQISDGVPFVTQCPISEGNTFRYQWIAGN 251

Query: 66  AGTHFWHAHT 75
           AGTHFWHAHT
Sbjct: 252 AGTHFWHAHT 261

Source: Megacopta punctatissima

Species: Megacopta punctatissima

Genus: Megacopta

Family: Plataspidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|61658224|gb|AAX49501.1| laccase-2 isoform A [Anopheles gambiae]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 61/69 (88%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
           VCE DRVV+DV N M+G+E TIHWHGI QRGTQY DGVPFVTQCPI QGNTFRYQ+T NA
Sbjct: 221 VCENDRVVIDVENHMEGMELTIHWHGIWQRGTQYYDGVPFVTQCPIQQGNTFRYQWTGNA 280

Query: 67  GTHFWHAHT 75
           GTHFWHAHT
Sbjct: 281 GTHFWHAHT 289

Source: Anopheles gambiae

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|63079853|gb|AAY29698.1| laccase-like multicopper oxidase 1 [Aedes aegypti]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 61/69 (88%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
           VCE DRVV+DV N M+G+E TIHWHGI QRGTQY DGVPFVTQCPI QGNTFRYQ+T NA
Sbjct: 215 VCENDRVVIDVENHMEGMELTIHWHGIWQRGTQYFDGVPFVTQCPIQQGNTFRYQWTGNA 274

Query: 67  GTHFWHAHT 75
           GTHFWHAHT
Sbjct: 275 GTHFWHAHT 283

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|61658226|gb|AAX49502.1| laccase-2 isoform B [Anopheles gambiae]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 61/69 (88%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
           VCE DRVV+DV N M+G+E TIHWHGI QRGTQY DGVPFVTQCPI QGNTFRYQ+T NA
Sbjct: 221 VCENDRVVIDVENHMEGMELTIHWHGIWQRGTQYYDGVPFVTQCPIQQGNTFRYQWTGNA 280

Query: 67  GTHFWHAHT 75
           GTHFWHAHT
Sbjct: 281 GTHFWHAHT 289

Source: Anopheles gambiae

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373563|gb|EFR21278.1| hypothetical protein AND_17284 [Anopheles darlingi]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 61/69 (88%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
           VCE DRVV+DV N M+G+E TIHWHGI QRGTQY DGVPFVTQCPI QGNTFRYQ+T NA
Sbjct: 263 VCENDRVVIDVENHMEGMELTIHWHGIWQRGTQYYDGVPFVTQCPIQQGNTFRYQWTGNA 322

Query: 67  GTHFWHAHT 75
           GTHFWHAHT
Sbjct: 323 GTHFWHAHT 331

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295492|ref|XP_001688810.1| AGAP006176-PB [Anopheles gambiae str. PEST] gi|157016064|gb|EDO63816.1| AGAP006176-PB [Anopheles gambiae str. PEST]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 61/69 (88%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
           VCE DRVV+DV N M+G+E TIHWHGI QRGTQY DGVPFVTQCPI QGNTFRYQ+T NA
Sbjct: 222 VCENDRVVIDVENHMEGMELTIHWHGIWQRGTQYYDGVPFVTQCPIQQGNTFRYQWTGNA 281

Query: 67  GTHFWHAHT 75
           GTHFWHAHT
Sbjct: 282 GTHFWHAHT 290

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116019|ref|XP_001658342.1| multicopper oxidase [Aedes aegypti] gi|108876642|gb|EAT40867.1| AAEL007415-PA [Aedes aegypti]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 61/69 (88%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
           VCE DRVV+DV N M+G+E TIHWHGI QRGTQY DGVPFVTQCPI QGNTFRYQ+T NA
Sbjct: 218 VCENDRVVIDVENHMEGMELTIHWHGIWQRGTQYYDGVPFVTQCPIQQGNTFRYQWTGNA 277

Query: 67  GTHFWHAHT 75
           GTHFWHAHT
Sbjct: 278 GTHFWHAHT 286

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295490|ref|XP_316236.4| AGAP006176-PA [Anopheles gambiae str. PEST] gi|157016063|gb|EAA11473.4| AGAP006176-PA [Anopheles gambiae str. PEST]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 61/69 (88%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
           VCE DRVV+DV N M+G+E TIHWHGI QRGTQY DGVPFVTQCPI QGNTFRYQ+T NA
Sbjct: 222 VCENDRVVIDVENHMEGMELTIHWHGIWQRGTQYYDGVPFVTQCPIQQGNTFRYQWTGNA 281

Query: 67  GTHFWHAHT 75
           GTHFWHAHT
Sbjct: 282 GTHFWHAHT 290

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028474|ref|XP_001987101.1| GH21733 [Drosophila grimshawi] gi|193903101|gb|EDW01968.1| GH21733 [Drosophila grimshawi]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 61/69 (88%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
           VCE D+VV+DV N M+G+E TIHWHGI QRG+QY DGVPFVTQCPI QGNTFRYQ+T NA
Sbjct: 245 VCENDKVVIDVENHMEGMEVTIHWHGIFQRGSQYYDGVPFVTQCPIQQGNTFRYQWTGNA 304

Query: 67  GTHFWHAHT 75
           GTHFWHAHT
Sbjct: 305 GTHFWHAHT 313

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
FB|FBgn0259247	784	laccase2 "laccase 2" [Drosophi	0.92	0.088	0.797	3.5e-28
FB|FBgn0032116	959	Mco1 "Multicopper oxidase-1" [	0.92	0.071	0.628	3.8e-21
FB|FBgn0052557	645	CG32557 [Drosophila melanogast	0.906	0.105	0.585	2.1e-16
SGD|S000004662	636	FET3 "Ferro-O2-oxidoreductase"	0.92	0.108	0.478	6.1e-14
TAIR|locus:2178973	573	AT5G21100 [Arabidopsis thalian	0.866	0.113	0.515	6.6e-14
ASPGD|ASPL0000035520	570	lccB [Emericella nidulans (tax	0.866	0.114	0.515	1.8e-13
UNIPROTKB|G4ND85	597	MGG_11608 "Laccase-2" [Magnapo	0.866	0.108	0.5	1.8e-12
TAIR|locus:2135242	582	AT4G39830 [Arabidopsis thalian	0.88	0.113	0.477	2.8e-12
TAIR|locus:505006625	588	AT5G21105 [Arabidopsis thalian	0.84	0.107	0.5	3.6e-12
UNIPROTKB|G5EGX4	595	MGCH7_ch7g635 "Laccase-1" [Mag	0.96	0.121	0.461	3.7e-12

FB|FBgn0259247 laccase2 "laccase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 3.5e-28, P = 3.5e-28
 Identities = 55/69 (79%), Positives = 61/69 (88%)

Query:     7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA 66
             VCE D+VV+DV N M+G+E TIHWHGI QRG+QY DGVPFVTQCPI QGNTFRYQ+T NA
Sbjct:   250 VCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFRYQWTGNA 309

Query:    67 GTHFWHAHT 75
             GTHFWHAHT
Sbjct:   310 GTHFWHAHT 318

GO:0052716 "hydroquinone:oxygen oxidoreductase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0040003 "chitin-based cuticle development" evidence=IMP

FB|FBgn0032116 Mco1 "Multicopper oxidase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 260 (96.6 bits), Expect = 3.8e-21, P = 3.8e-21
 Identities = 44/70 (62%), Positives = 54/70 (77%)

Query:     7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
             VCEGD +VVDV+N + G   +IHWHG+HQ+ T Y DGVP +TQCPIT   TFRY F A+ 
Sbjct:   313 VCEGDEIVVDVKNHLLGESTSIHWHGLHQKKTPYMDGVPHITQCPITPHATFRYSFPADL 372

Query:    66 AGTHFWHAHT 75
             +GTHFWH+HT
Sbjct:   373 SGTHFWHSHT 382

GO:0005381 "iron ion transmembrane transporter activity" evidence=ISS

GO:0004322 "ferroxidase activity" evidence=ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0031233 "intrinsic to external side of plasma membrane" evidence=ISM

GO:0009986 "cell surface" evidence=IDA

GO:0055072 "iron ion homeostasis" evidence=IMP

GO:0045178 "basal part of cell" evidence=IDA

FB|FBgn0052557 CG32557 [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 41/70 (58%), Positives = 48/70 (68%)

Query:     7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
             VC GD VV DV NSM     TIHWHG+HQR T + DGVP VTQ PI  G  FRY+F  + 
Sbjct:   152 VCYGDTVVADVINSMHET-TTIHWHGMHQRLTPFMDGVPHVTQYPIEAGQAFRYRFEVDH 210

Query:    66 AGTHFWHAHT 75
              GT++WH+HT
Sbjct:   211 GGTNWWHSHT 220

GO:0052716 "hydroquinone:oxygen oxidoreductase activity" evidence=ISS

GO:0005507 "copper ion binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

SGD|S000004662 FET3 "Ferro-O2-oxidoreductase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 190 (71.9 bits), Expect = 6.1e-14, P = 6.1e-14
 Identities = 34/71 (47%), Positives = 48/71 (67%)

Query:     7 VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-- 64
             V +GDRV + + N M+    ++H+HG+ Q GT   DGVPF+TQCPI  G+T  Y FT   
Sbjct:    59 VNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDY 118

Query:    65 NAGTHFWHAHT 75
             N GT+++H+HT
Sbjct:   119 NVGTYWYHSHT 129

GO:0005886 "plasma membrane" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046688 "response to copper ion" evidence=IGI;IMP

GO:0006827 "high-affinity iron ion transport" evidence=IMP

GO:0005381 "iron ion transmembrane transporter activity" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA;ISM

GO:0005507 "copper ion binding" evidence=IEA

GO:0033215 "iron assimilation by reduction and transport" evidence=IMP

GO:0033573 "high affinity iron permease complex" evidence=IGI;IDA

GO:0004322 "ferroxidase activity" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055072 "iron ion homeostasis" evidence=IEA

GO:0006810 "transport" evidence=IEA

TAIR|locus:2178973 AT5G21100 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.6e-14, P = 6.6e-14
 Identities = 34/66 (51%), Positives = 43/66 (65%)

Query:    10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AGT 68
             GD V++ V N +      IHWHGI Q+GT ++DG   VTQCPI  G TF Y+F  + AGT
Sbjct:    61 GDTVIIHVVNKLSTEGVVIHWHGIRQKGTPWADGAAGVTQCPINPGETFTYKFIVDKAGT 120

Query:    69 HFWHAH 74
             HF+H H
Sbjct:   121 HFYHGH 126

GO:0005507 "copper ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

ASPGD|ASPL0000035520 lccB [Emericella nidulans (taxid:162425)]

 Score = 185 (70.2 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 34/66 (51%), Positives = 44/66 (66%)

Query:    10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA-GT 68
             GD +V+ V N ++     IHWHGI QRGT   DGVP VTQCPI+ G T+ Y+F A   GT
Sbjct:    98 GDELVIHVTNGLEHNGTAIHWHGIWQRGTNQYDGVPGVTQCPISPGQTYTYRFRATQYGT 157

Query:    69 HFWHAH 74
              ++H+H
Sbjct:   158 TWYHSH 163

GO:0052716 "hydroquinone:oxygen oxidoreductase activity" evidence=ISS;IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0042438 "melanin biosynthetic process" evidence=IEA

GO:0070627 "ferrous iron import" evidence=IEA

GO:0043324 "pigment metabolic process involved in developmental pigmentation" evidence=IEA

UNIPROTKB|G4ND85 MGG_11608 "Laccase-2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 176 (67.0 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query:    10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA-GT 68
             GD +V+ V N+M      IHWHGIHQR T   DGVP VTQCPI  G +  Y+F A   G+
Sbjct:   110 GDNLVIHVTNNMQTNGTAIHWHGIHQRNTVEYDGVPGVTQCPIAPGKSLTYKFRATQYGS 169

Query:    69 HFWHAH 74
              ++H+H
Sbjct:   170 TWYHSH 175

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135242 AT4G39830 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 32/67 (47%), Positives = 43/67 (64%)

Query:     9 EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA-G 67
             +GD +VV+++NS       +HWHGI Q GT + DGV  VTQCPI  G  F YQF  +  G
Sbjct:    72 QGDTIVVELKNSFMTENVAVHWHGIRQIGTPWFDGVEGVTQCPILPGEVFIYQFVVDRPG 131

Query:    68 THFWHAH 74
             T+ +H+H
Sbjct:   132 TYMYHSH 138

GO:0005507 "copper ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:505006625 AT5G21105 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 34/68 (50%), Positives = 43/68 (63%)

Query:    10 GDRVVVDVRNSM--DGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA- 66
             GD +VV++ N +  +GL   IHWHGI Q G+ ++DG   VTQC I  G TF Y FT    
Sbjct:    75 GDTIVVNLTNKLTTEGL--VIHWHGIRQFGSPWADGAAGVTQCAINPGETFTYNFTVEKP 132

Query:    67 GTHFWHAH 74
             GTHF+H H
Sbjct:   133 GTHFYHGH 140

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0008447 "L-ascorbate oxidase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

UNIPROTKB|G5EGX4 MGCH7_ch7g635 "Laccase-1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 173 (66.0 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 36/78 (46%), Positives = 48/78 (61%)

Query:     3 YPKNVCE---GDRVVVDVRNSMDGLEN--TIHWHGIHQRGTQYSDGVPFVTQCPITQGNT 57
             YP  + E   GD V V V N++ G E    +HWHG+ QRGT Y DGVP VTQC I  G +
Sbjct:   105 YPGPMIEANWGDTVQVTVHNNITGPEEGTAMHWHGLLQRGTPYQDGVPGVTQCAIAPGQS 164

Query:    58 FRYQFTANA-GTHFWHAH 74
             + Y F A+  G+ ++H+H
Sbjct:   165 YTYSFLADQFGSSWYHSH 182

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
pfam07732	119	pfam07732, Cu-oxidase_3, Multicopper oxidase	1e-27
TIGR03388	541	TIGR03388, ascorbase, L-ascorbate oxidase, plant t	3e-21
PLN02604	566	PLN02604, PLN02604, oxidoreductase	1e-18
PLN02191	574	PLN02191, PLN02191, L-ascorbate oxidase	3e-18
TIGR03389	539	TIGR03389, laccase, laccase, plant	2e-17
TIGR03390	538	TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fu	3e-12
COG2132	451	COG2132, SufI, Putative multicopper oxidases [Seco	1e-10
TIGR01480	587	TIGR01480, copper_res_A, copper-resistance protein	6e-09
PRK10965	523	PRK10965, PRK10965, multicopper oxidase; Provision	2e-06
PLN02354	552	PLN02354, PLN02354, copper ion binding / oxidoredu	3e-06
PLN00044	596	PLN00044, PLN00044, multi-copper oxidase-related p	5e-06
PLN02792	536	PLN02792, PLN02792, oxidoreductase	6e-06
PLN02835	539	PLN02835, PLN02835, oxidoreductase	0.001

>gnl|CDD|219542 pfam07732, Cu-oxidase_3, Multicopper oxidase

 Score = 95.8 bits (239), Expect = 1e-27
 Identities = 40/72 (55%), Positives = 52/72 (72%), Gaps = 3/72 (4%)

Query: 6  NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
           V EGD VVV+V N++D    TIHWHG+ Q GT ++DGVP VTQCPI  G +F Y+FT  
Sbjct: 29 RVREGDTVVVNVTNNLD-EPTTIHWHGLRQPGTPWADGVPGVTQCPIPPGESFTYRFTVK 87

Query: 66 --AGTHFWHAHT 75
            AGT+++H+HT
Sbjct: 88 QQAGTYWYHSHT 99

This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. Length = 119

>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type

 Score = 84.8 bits (210), Expect = 3e-21
 Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-NAG 67
            GD +VV++ N +      IHWHGI Q GT ++DG   VTQC I  G TF Y F     G
Sbjct: 38  AGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPG 97

Query: 68  THFWHAH 74
           T+F+H H
Sbjct: 98  TYFYHGH 104

Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. Length = 541

>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase

 Score = 77.6 bits (191), Expect = 1e-18
 Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AG 67
           +GD V+V+++NS+      IHWHGI Q GT + DG   VTQCPI  G TF Y+F  +  G
Sbjct: 61  QGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPG 120

Query: 68  THFWHAH 74
           T+ +HAH
Sbjct: 121 TYLYHAH 127

Length = 566

>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase

 Score = 76.2 bits (187), Expect = 3e-18
 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AGT 68
           GD +VV + N +      IHWHGI Q+G+ ++DG   VTQC I  G TF Y+FT    GT
Sbjct: 61  GDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGT 120

Query: 69  HFWHAH 74
           HF+H H
Sbjct: 121 HFYHGH 126

Length = 574

>gnl|CDD|234194 TIGR03389, laccase, laccase, plant

 Score = 74.4 bits (183), Expect = 2e-17
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 9   EGDRVVVDVRNSMDGLEN-TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--AN 65
           EGD V+V+V N++    N TIHWHG+ Q    ++DG  ++TQCPI  G ++ Y FT    
Sbjct: 40  EGDTVIVNVTNNVQ--YNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQ 97

Query: 66  AGTHFWHAH 74
            GT +WHAH
Sbjct: 98  RGTLWWHAH 106

Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. Length = 539

>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type

 Score = 59.1 bits (143), Expect = 3e-12
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT---AN 65
           EG    + V N +     T+HWHG+ QR   +SDG P  +Q PI  G+ F Y+      +
Sbjct: 45  EGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGD 104

Query: 66  AGTHFWHAH 74
           AG++F+H+H
Sbjct: 105 AGSYFYHSH 113

This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized. Length = 538

>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AG 67
           +GD V +D+ N +   + ++HWHG+   G    DGVP +TQ P   G T  Y FT +  G
Sbjct: 70  KGDTVTLDLTNRLLV-DTSVHWHGLPVPGEM--DGVPPLTQIPPGPGETPTYTFTQDVPG 126

Query: 68  THFWHAHT 75
           T+++H HT
Sbjct: 127 TYWYHPHT 134

Length = 451

>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-NAG 67
           EGD V + V N++   + +IHWHGI        DGVP V+   I  G TF Y+F    +G
Sbjct: 82  EGDTVRLRVTNTLP-EDTSIHWHGILLPFQM--DGVPGVSFAGIAPGETFTYRFPVRQSG 138

Query: 68  THFWHAHT 75
           T+++H+H+
Sbjct: 139 TYWYHSHS 146

This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]. Length = 587

>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN--AG 67
           G  V VD+ N +   E T+HWHG+   G    DG P   Q  I  G      FT +  A 
Sbjct: 84  GKAVTVDITNQLPE-ETTLHWHGLEVPGEV--DGGP---QGIIAPGGKRTVTFTVDQPAA 137

Query: 68  THFWHAHT 75
           T ++H H 
Sbjct: 138 TCWFHPHQ 145

Length = 523

>gnl|CDD|177987 PLN02354, PLN02354, copper ion binding / oxidoreductase

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 6   NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
           N    + +V++V N++D     + W GI QR   + DGVP  T CPI  G  F Y F
Sbjct: 61  NSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHF 115

Length = 552

>gnl|CDD|165622 PLN00044, PLN00044, multi-copper oxidase-related protein; Provisional

 Score = 42.0 bits (98), Expect = 5e-06
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 4   PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 63
             NV     +VV+VRN++D     + WHG+ QR + + DGV   T C I  G  + YQF 
Sbjct: 61  ALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGV-GGTNCAIPAGWNWTYQFQ 118

Query: 64  A--NAGTHFWHAHT 75
                G+ F+   T
Sbjct: 119 VKDQVGSFFYAPST 132

Length = 596

>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 11  DRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA--NAGT 68
           D +V++V N +D     + W+G+H R   Y DGV + T CPI  G  + Y F      G+
Sbjct: 55  DNLVINVHNDLDE-PFLLSWNGVHMRKNSYQDGV-YGTTCPIPPGKNYTYDFQVKDQVGS 112

Query: 69  HFW 71
           +F+
Sbjct: 113 YFY 115

Length = 536

>gnl|CDD|178429 PLN02835, PLN02835, oxidoreductase

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 6   NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
           +V   D +++++ N +D     + W+GI QR   + DGV   T CPI   + + Y+F
Sbjct: 63  DVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKF 117

Length = 539

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
PF07732	117	Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01	99.97
PLN02835	539	oxidoreductase	99.96
PLN02168	545	copper ion binding / pectinesterase	99.96
PLN02792	536	oxidoreductase	99.96
PLN02354	552	copper ion binding / oxidoreductase	99.96
TIGR03389	539	laccase laccase, plant. Members of this protein fa	99.96
PLN00044	596	multi-copper oxidase-related protein; Provisional	99.96
PLN02991	543	oxidoreductase	99.96
TIGR03390	538	ascorbOXfungal L-ascorbate oxidase, fungal type. T	99.96
PLN02191	574	L-ascorbate oxidase	99.96
TIGR03388	541	ascorbase L-ascorbate oxidase, plant type. Members	99.95
PLN02604	566	oxidoreductase	99.94
TIGR01480	587	copper_res_A copper-resistance protein, CopA famil	99.94
KOG1263|consensus	563		99.94
PRK10965	523	multicopper oxidase; Provisional	99.92
PRK10883	471	FtsI repressor; Provisional	99.89
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	99.83
TIGR01480	587	copper_res_A copper-resistance protein, CopA famil	99.79
COG2132	451	SufI Putative multicopper oxidases [Secondary meta	99.79
TIGR03095	148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	99.72
PF07731	138	Cu-oxidase_2: Multicopper oxidase; InterPro: IPR01	99.52
TIGR03096	135	nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de	99.34
PLN02835	539	oxidoreductase	99.1
COG2132	451	SufI Putative multicopper oxidases [Secondary meta	98.99
TIGR03388	541	ascorbase L-ascorbate oxidase, plant type. Members	98.98
TIGR03389	539	laccase laccase, plant. Members of this protein fa	98.96
PLN02604	566	oxidoreductase	98.93
PLN02168	545	copper ion binding / pectinesterase	98.9
PLN02354	552	copper ion binding / oxidoreductase	98.89
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	98.88
PRK10965	523	multicopper oxidase; Provisional	98.83
PLN02991	543	oxidoreductase	98.82
PLN02792	536	oxidoreductase	98.8
PLN02191	574	L-ascorbate oxidase	98.79
TIGR03390	538	ascorbOXfungal L-ascorbate oxidase, fungal type. T	98.78
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	98.73
PLN00044	596	multi-copper oxidase-related protein; Provisional	98.67
PRK02888	635	nitrous-oxide reductase; Validated	98.64
TIGR02657	83	amicyanin amicyanin. Members of this family are am	98.59
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	98.54
PRK02710	119	plastocyanin; Provisional	98.43
PF00394	159	Cu-oxidase: Multicopper oxidase; InterPro: IPR0011	98.39
PRK10883	471	FtsI repressor; Provisional	98.35
PF00127	99	Copper-bind: Copper binding proteins, plastocyanin	98.3
KOG1263|consensus	563		98.14
TIGR03102	115	halo_cynanin halocyanin domain. Halocyanins are bl	97.98
TIGR02375	116	pseudoazurin pseudoazurin. Pseudoazurin, also call	97.79
COG3794	128	PetE Plastocyanin [Energy production and conversio	97.63
PF00116	120	COX2: Cytochrome C oxidase subunit II, periplasmic	97.38
TIGR03094	195	sulfo_cyanin sulfocyanin. Members of this family a	97.16
PF06525	196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	97.15
COG4263	637	NosZ Nitrous oxide reductase [Energy production an	96.7
TIGR02695	125	azurin azurin. Azurin is a blue copper-binding pro	96.69
TIGR02866	201	CoxB cytochrome c oxidase, subunit II. Cytochrome	95.42
PRK13202	104	ureB urease subunit beta; Reviewed	95.1
PRK13203	102	ureB urease subunit beta; Reviewed	94.33
TIGR00192	101	urease_beta urease, beta subunit. In a number of s	94.3
PF12690	82	BsuPI: Intracellular proteinase inhibitor; InterPr	93.89
cd00407	101	Urease_beta Urease beta-subunit; Urease is a nicke	93.88
PRK10378	375	inactive ferrous ion transporter periplasmic prote	93.35
PRK13201	136	ureB urease subunit beta; Reviewed	93.02
PRK13198	158	ureB urease subunit beta; Reviewed	93.0
PRK13205	162	ureB urease subunit beta; Reviewed	92.93
PRK13204	159	ureB urease subunit beta; Reviewed	92.88
COG4263	637	NosZ Nitrous oxide reductase [Energy production an	92.77
COG1622	247	CyoA Heme/copper-type cytochrome/quinol oxidases,	89.76
PRK13192	208	bifunctional urease subunit gamma/beta; Reviewed	89.37
PF05938	110	Self-incomp_S1: Plant self-incompatibility protein	88.71
PF00699	100	Urease_beta: Urease beta subunit CAUTION: The Pros	88.6
PF10989	146	DUF2808: Protein of unknown function (DUF2808); In	87.56
PRK13986	225	urease subunit alpha; Provisional	86.4
COG4454	158	Uncharacterized copper-binding protein [Inorganic	85.61
COG0832	106	UreB Urea amidohydrolase (urease) beta subunit [Am	85.13
TIGR03079	399	CH4_NH3mon_ox_B methane monooxygenase/ammonia mono	83.65
PF04744	381	Monooxygenase_B: Monooxygenase subunit B protein;	82.51
PF05506	89	DUF756: Domain of unknown function (DUF756); Inter	82.44
cd00918	120	Der-p2_like Several group 2 allergen proteins belo	80.89
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	80.25

>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=99.97  E-value=5.6e-32  Score=159.01  Aligned_cols=73  Identities=48%  Similarity=0.865  Sum_probs=69.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CC-CeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-AN-AGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~-~Gt~~YH~H~   75 (75)
                      .++||+++||+|+|+|+|.++ .+++|||||+.++..+++||++..++++|.||++++|+|+ .+ +||||||||+
T Consensus        25 GPtI~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~   99 (117)
T PF07732_consen   25 GPTIRVREGDTVRITVTNNLD-EPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHV   99 (117)
T ss_dssp             EEEEEEETTEEEEEEEEEESS-SGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECS
T ss_pred             CCEEEEEcCCeeEEEEEeccc-cccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCC
Confidence            579999999999999999998 8999999999998887899999999999999999999999 55 9999999995

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....

>PLN02835 oxidoreductase

Probab=99.96  E-value=9.6e-30  Score=178.84  Aligned_cols=73  Identities=29%  Similarity=0.559  Sum_probs=69.2

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+++|+++ ++++|||||+.+...+|+||+++ +||||+||++|+|+|+  +++||||||||.
T Consensus        58 PGP~I~~~~GD~v~v~v~N~L~-~~ttiHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~  132 (539)
T PLN02835         58 PGPRLDVVTNDNIILNLINKLD-QPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPST  132 (539)
T ss_pred             CCCCEEEECCCEEEEEEEeCCC-CCCcEEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCc
Confidence            4689999999999999999999 89999999999998889999998 8999999999999998  689999999994

>PLN02168 copper ion binding / pectinesterase

Probab=99.96  E-value=1.5e-29  Score=178.04  Aligned_cols=73  Identities=26%  Similarity=0.501  Sum_probs=69.4

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|++.|+++ ++++|||||+.+...+|+||+++ +||||+||++|+|+|+  +++||||||||.
T Consensus        55 PGP~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~  129 (545)
T PLN02168         55 PGPLLNATANDVINVNIFNNLT-EPFLMTWNGLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSL  129 (545)
T ss_pred             CCCcEEEECCCEEEEEEEeCCC-CCccEeeCCccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecCh
Confidence            4689999999999999999999 89999999999998889999999 9999999999999999  589999999994

>PLN02792 oxidoreductase

Probab=99.96  E-value=2.1e-29  Score=177.08  Aligned_cols=73  Identities=30%  Similarity=0.598  Sum_probs=69.2

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|.|+++ ++++|||||+.++..+|+||+++ +||||+||++|+|+|+  +++||||||||.
T Consensus        45 PGP~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~q~~~~~~DGv~~-tqcPI~PG~sftY~F~~~~q~GT~WYHsH~  119 (536)
T PLN02792         45 PGPEIRSLTNDNLVINVHNDLD-EPFLLSWNGVHMRKNSYQDGVYG-TTCPIPPGKNYTYDFQVKDQVGSYFYFPSL  119 (536)
T ss_pred             CCCcEEEECCCEEEEEEEeCCC-CCcCEeCCCcccCCCCccCCCCC-CcCccCCCCcEEEEEEeCCCccceEEecCc
Confidence            4689999999999999999999 89999999999999899999987 8999999999999999  589999999995

>PLN02354 copper ion binding / oxidoreductase

Probab=99.96  E-value=1.6e-29  Score=178.06  Aligned_cols=73  Identities=34%  Similarity=0.636  Sum_probs=69.5

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|++.|+++ ++++|||||+.+...+|+||+++ +||||+||++|+|+|+  +++||||||||.
T Consensus        56 PGP~I~~~~GD~v~V~v~N~l~-~~ttiHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~  130 (552)
T PLN02354         56 PGPNINSTSNNNIVINVFNNLD-EPFLLTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPST  130 (552)
T ss_pred             cCCcEEEeCCCEEEEEEEECCC-CCcccccccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCc
Confidence            4689999999999999999998 89999999999998889999999 9999999999999999  589999999995

>TIGR03389 laccase laccase, plant

Probab=99.96  E-value=3.4e-29  Score=175.94  Aligned_cols=74  Identities=42%  Similarity=0.824  Sum_probs=70.3

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++|++++||+|+|+++|+++ .+++|||||+.+...+++||+++++||||+||++++|+|+  +++||||||||.
T Consensus        32 PGP~i~~~~GD~v~v~v~N~l~-~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~  107 (539)
T TIGR03389        32 PGPTLYAREGDTVIVNVTNNVQ-YNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHI  107 (539)
T ss_pred             cCCEEEEEcCCEEEEEEEeCCC-CCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCc
Confidence            4689999999999999999999 8999999999998888999999999999999999999999  599999999994

Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.

>PLN00044 multi-copper oxidase-related protein; Provisional

Probab=99.96  E-value=3.3e-29  Score=177.56  Aligned_cols=73  Identities=36%  Similarity=0.604  Sum_probs=69.4

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|.|+++ .+++|||||+.+...+|+||+++ +||||+||++|+|+|+  +++||||||||+
T Consensus        58 PGPtI~~~~GD~v~V~V~N~L~-~~ttIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~  132 (596)
T PLN00044         58 PGPALNVTTNWNLVVNVRNALD-EPLLLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPST  132 (596)
T ss_pred             CCCcEEEECCCEEEEEEEeCCC-CCccEEECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccc
Confidence            4689999999999999999999 89999999999999899999987 9999999999999999  699999999995

>PLN02991 oxidoreductase

Probab=99.96  E-value=3.2e-29  Score=176.30  Aligned_cols=73  Identities=26%  Similarity=0.495  Sum_probs=69.1

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++|++++||+|+|+++|+++ ++++|||||+.+...+|+||+++ +||||+||++|+|+|+  +++||||||||.
T Consensus        57 PGP~I~~~~GD~v~V~V~N~L~-~~ttiHWHGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~  131 (543)
T PLN02991         57 PGPDIISVTNDNLIINVFNHLD-EPFLISWSGIRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSL  131 (543)
T ss_pred             CCCcEEEECCCEEEEEecCCCC-CCccEEECCcccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCc
Confidence            4689999999999999999999 89999999999988889999988 8999999999999999  589999999994

>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type

Probab=99.96  E-value=5.9e-29  Score=174.80  Aligned_cols=75  Identities=35%  Similarity=0.666  Sum_probs=70.0

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc---CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT---ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~---~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|.|+++..+++|||||+.+...+|+||+++++||||+||++|+|+|+   +++||||||||.
T Consensus        37 PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~  114 (538)
T TIGR03390        37 PGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHV  114 (538)
T ss_pred             CCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCC
Confidence            468999999999999999998646899999999998888999999999999999999999998   389999999995

This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.

>PLN02191 L-ascorbate oxidase

Probab=99.96  E-value=1.3e-28  Score=174.06  Aligned_cols=75  Identities=43%  Similarity=0.787  Sum_probs=70.7

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|++.|+++..+++|||||+.+...+|+||+++++||||+||++|+|+|+ +++||||||||.
T Consensus        52 pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~  127 (574)
T PLN02191         52 PGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHY  127 (574)
T ss_pred             CCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCc
Confidence            468999999999999999998746899999999999888999999999999999999999999 999999999995

>TIGR03388 ascorbase L-ascorbate oxidase, plant type

Probab=99.95  E-value=2.6e-27  Score=166.58  Aligned_cols=75  Identities=41%  Similarity=0.700  Sum_probs=70.0

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|.|++...+++|||||+.+...+|+||+++++||+|+||++++|+|+ +++||||||||.
T Consensus        30 pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~  105 (541)
T TIGR03388        30 PGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHY  105 (541)
T ss_pred             CCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecc
Confidence            368999999999999999998546899999999988888899999999999999999999999 999999999994

Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.

>PLN02604 oxidoreductase

Probab=99.94  E-value=1.1e-26  Score=164.13  Aligned_cols=74  Identities=45%  Similarity=0.730  Sum_probs=69.1

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .++||+++||+|+|+|+|++..++++|||||+.+...+++||+++++||+|+||++++|+|+ +++||||||||.
T Consensus        54 gP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~  128 (566)
T PLN02604         54 GPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHY  128 (566)
T ss_pred             CCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCc
Confidence            57899999999999999998437899999999988778899999999999999999999999 999999999995

>TIGR01480 copper_res_A copper-resistance protein, CopA family

Probab=99.94  E-value=8.3e-27  Score=165.26  Aligned_cols=72  Identities=38%  Similarity=0.582  Sum_probs=67.6

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|+++ .+++|||||+..+.  .+||+|+++|++|+||++++|+|+ .++||||||||.
T Consensus        74 PGP~ir~~~Gd~v~v~v~N~l~-~~tsiHwHGl~~~~--~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~  146 (587)
T TIGR01480        74 PGPLLRWREGDTVRLRVTNTLP-EDTSIHWHGILLPF--QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHS  146 (587)
T ss_pred             CCceEEEECCCEEEEEEEcCCC-CCceEEcCCCcCCc--cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCc
Confidence            4689999999999999999999 89999999998864  589999999999999999999999 999999999995

This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.

>KOG1263|consensus

Probab=99.94  E-value=9e-27  Score=164.24  Aligned_cols=73  Identities=44%  Similarity=0.830  Sum_probs=70.0

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++|++++||+|.|.+.|.++ ++.+|||||+++...+|+|| +.++||||+||++|+|+|+  ++.||||||+|+
T Consensus        57 PGP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~  131 (563)
T KOG1263|consen   57 PGPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHV  131 (563)
T ss_pred             CCCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeecc
Confidence            4689999999999999999999 89999999999999999999 9999999999999999999  699999999995

>PRK10965 multicopper oxidase; Provisional

Probab=99.92  E-value=3.4e-25  Score=155.54  Aligned_cols=69  Identities=35%  Similarity=0.564  Sum_probs=63.1

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-CCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-NAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+++|.++ .+++|||||+.++.  .+||+|   ||+|+||++++|+|+ + ++||||||||.
T Consensus        75 PGPtIr~~~Gd~v~v~~~N~L~-~~ttiHwHGl~~~~--~~DG~p---q~~I~PG~s~~Y~f~~~q~aGT~WYH~H~  145 (523)
T PRK10965         75 LGPAVRLQRGKAVTVDITNQLP-EETTLHWHGLEVPG--EVDGGP---QGIIAPGGKRTVTFTVDQPAATCWFHPHQ  145 (523)
T ss_pred             CCceEEEECCCEEEEEEEECCC-CCccEEcccccCCC--ccCCCC---CCCCCCCCEEEEEeccCCCCceEEEecCC
Confidence            4689999999999999999999 89999999999875  389987   789999999999999 5 58999999994

>PRK10883 FtsI repressor; Provisional

Probab=99.89  E-value=5e-23  Score=143.21  Aligned_cols=69  Identities=20%  Similarity=0.264  Sum_probs=60.0

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|++.|.++ ++++|||||+.++.. ..||++    ++|+||++++|.|+  +++||||||||.
T Consensus        75 pGPtir~~~Gd~v~v~v~N~L~-~~ttiHwHGl~~~~~-~~~g~~----~~I~PG~~~~y~f~~~~~aGT~WYH~H~  145 (471)
T PRK10883         75 LGPTIRVWKGDDVKLIYSNRLT-EPVSMTVSGLQVPGP-LMGGPA----RMMSPNADWAPVLPIRQNAATCWYHANT  145 (471)
T ss_pred             cCCeEEEECCCEEEEEEEeCCC-CCCceeECCccCCCC-CCCCcc----ccCCCCCeEEEEEecCCCceeeEEccCC
Confidence            3579999999999999999999 899999999998754 355543    46999999999998  569999999994

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=99.83  E-value=2.1e-20  Score=124.60  Aligned_cols=66  Identities=23%  Similarity=0.325  Sum_probs=57.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      .++||+++||+|+|+|+|.+.. .++++||||..     +.||.+..++  |+||++++|+|. +++||||||||
T Consensus        58 GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~~~~Gty~YH~H  125 (311)
T TIGR02376        58 GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKATRPGAFVYHCA  125 (311)
T ss_pred             CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEcCCCEEEEEEcC
Confidence            5789999999999999999741 48999999963     3577766554  899999999999 99999999999

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>TIGR01480 copper_res_A copper-resistance protein, CopA family

Probab=99.79  E-value=2.9e-19  Score=127.03  Aligned_cols=71  Identities=21%  Similarity=0.307  Sum_probs=59.7

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC--cccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP--FVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~--~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .+|++++||+|+|+|.|.+. ++|+|||||+.+... ..||..  ...+..|+||++++|+|. +++|+||||||.
T Consensus       499 ~pl~v~~Gervri~l~N~t~-~~HpmHlHG~~f~v~-~~~G~~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~  572 (587)
T TIGR01480       499 TPLRFNYGERLRVVLVNDTM-MAHPIHLHGMWSELE-DGQGEFQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHM  572 (587)
T ss_pred             CceEecCCCEEEEEEECCCC-CCcceeEcCceeeee-cCCCcccccCCceeeCCCCEEEEEEECCCCeEEEEcCCC
Confidence            47999999999999999998 899999999987643 235532  123467999999999999 999999999994

This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.

>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.79  E-value=4.2e-19  Score=122.73  Aligned_cols=72  Identities=38%  Similarity=0.604  Sum_probs=65.0

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +.++||+++||+|+|.++|.+. .++++||||+..+  ...||++..+++++.||++++|.|+ +.+||||||+|.
T Consensus        62 ~gP~i~~~~Gd~v~l~~~N~l~-~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~~~~gT~wyh~H~  134 (451)
T COG2132          62 PGPTIRVKKGDTVTLDLTNRLL-VDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHT  134 (451)
T ss_pred             cCceEEEecCCEEEEEEEeCCC-CCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecCCCCcceEeccCC
Confidence            3689999999999999999987 4599999998776  4589998888999999999999999 888899999995

>TIGR03095 rusti_cyanin rusticyanin

Probab=99.72  E-value=4.1e-17  Score=99.29  Aligned_cols=74  Identities=19%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             cccEEEecCCEEEEEEEeCCCC--CCceEEeCCccccCCCCCCCCCcccccccCCC----CE--EEEEEc-CCCeeeEEc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDG--LENTIHWHGIHQRGTQYSDGVPFVTQCPITQG----NT--FRYQFT-ANAGTHFWH   72 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~--~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG----~~--~~y~~~-~~~Gt~~YH   72 (75)
                      .++|++++||+|+|.+.|..+.  -...||++|...+..+.+||++..+++++.|+    +.  .++.|+ .++|+||||
T Consensus        51 ~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyh  130 (148)
T TIGR03095        51 NPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYL  130 (148)
T ss_pred             CCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEE
Confidence            4678999999999999999641  23567777765554455899988888888773    22  355666 789999999


Q ss_pred             cCC
Q psy88            73 AHT   75 (75)
Q Consensus        73 ~H~   75 (75)
                      ||.
T Consensus       131 C~~  133 (148)
T TIGR03095       131 CTY  133 (148)
T ss_pred             cCC
Confidence            984

Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).

>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=99.52  E-value=3e-14  Score=84.54  Aligned_cols=72  Identities=22%  Similarity=0.339  Sum_probs=58.5

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc---------------ccccccCCCCEEEEEEc-CC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF---------------VTQCPITQGNTFRYQFT-AN   65 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~---------------~~~~~i~pG~~~~y~~~-~~   65 (75)
                      ...++++.|+.+++.+.|... .++++|+||..+.... .++...               .....|+||+..+.+|. +.
T Consensus        33 ~~~~~~~~g~~v~~~l~N~~~-~~Hp~HlHG~~F~vl~-~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~  110 (138)
T PF07731_consen   33 TPVIEVKNGDVVEIVLQNNGS-MPHPFHLHGHSFQVLG-RGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN  110 (138)
T ss_dssp             TSEEEEETTSEEEEEEEECTT-SSEEEEETTSEEEEEE-ETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred             cceEEEeCCCEEEEEEECCCC-CccceEEEeeEEEeee-cCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence            357899999999999999988 8999999998875332 222221               23566899999999999 99


Q ss_pred             CeeeEEccCC
Q psy88            66 AGTHFWHAHT   75 (75)
Q Consensus        66 ~Gt~~YH~H~   75 (75)
                      +|.|.||||.
T Consensus       111 ~G~w~~HCHi  120 (138)
T PF07731_consen  111 PGPWLFHCHI  120 (138)
T ss_dssp             TEEEEEEESS
T ss_pred             ceEEEEEEch
Confidence            9999999994

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....

>TIGR03096 nitroso_cyanin nitrosocyanin

Probab=99.34  E-value=6.5e-12  Score=75.39  Aligned_cols=59  Identities=24%  Similarity=0.253  Sum_probs=45.9

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++++.|..+ .+     |++....    .|.    ...++||++.+++|+ +++|+|+|||-
T Consensus        60 P~~I~VkaGD~Vtl~vtN~d~-~~-----H~f~i~~----~gi----s~~I~pGet~TitF~adKpG~Y~y~C~  119 (135)
T TIGR03096        60 PEALVVKKGTPVKVTVENKSP-IS-----EGFSIDA----YGI----SEVIKAGETKTISFKADKAGAFTIWCQ  119 (135)
T ss_pred             CCEEEECCCCEEEEEEEeCCC-Cc-----cceEECC----CCc----ceEECCCCeEEEEEECCCCEEEEEeCC
Confidence            568999999999999999876 44     4433321    122    224899999999999 99999999994

Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.

>PLN02835 oxidoreductase

Probab=99.10  E-value=2.2e-10  Score=81.43  Aligned_cols=71  Identities=13%  Similarity=0.042  Sum_probs=55.5

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC--------------CCcccccccCCCCEEEEEEc-CCCee
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--------------VPFVTQCPITQGNTFRYQFT-ANAGT   68 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG--------------~~~~~~~~i~pG~~~~y~~~-~~~Gt   68 (75)
                      +++++.|+.|+|.+.|... .+|.||+||..+......+|              .+...+..|++++....+|. ++||.
T Consensus       412 ~~~~~~~~~Veivi~N~~~-~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~  490 (539)
T PLN02835        412 VMQTSLHDFLEVVFQNNEK-TMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGM  490 (539)
T ss_pred             EEEcCCCCEEEEEEECCCC-CCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEE
Confidence            4677889999999999987 79999999988654322233              11123455788999999999 99999


Q ss_pred             eEEccCC
Q psy88            69 HFWHAHT   75 (75)
Q Consensus        69 ~~YH~H~   75 (75)
                      |++|||.
T Consensus       491 Wl~HCHi  497 (539)
T PLN02835        491 WNMRSAI  497 (539)
T ss_pred             eeeeecc
Confidence            9999994

>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.99  E-value=1.4e-09  Score=75.55  Aligned_cols=71  Identities=17%  Similarity=0.264  Sum_probs=57.3

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCC-----CC-CcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSD-----GV-PFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~D-----G~-~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .++.++.||..++.+.|... +.+.+|.||..+.... .|     .. ..-....+.||++..++|. +.+|.|.||||.
T Consensus       357 ~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~-~~~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~  434 (451)
T COG2132         357 VTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLS-GDAPAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHI  434 (451)
T ss_pred             CceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEe-cCCCcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccc
Confidence            57799999999999999998 8999999998876432 21     01 1112455899999999999 999999999994

>TIGR03388 ascorbase L-ascorbate oxidase, plant type

Probab=98.98  E-value=1.7e-09  Score=76.79  Aligned_cols=72  Identities=21%  Similarity=0.212  Sum_probs=53.8

Q ss_pred             cEEEecCCEEEEEEEeCCC-----CCCceEEeCCccccCCCCCCC---------------CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEGDRVVVDVRNSMD-----GLENTIHWHGIHQRGTQYSDG---------------VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~-----~~~~~iH~HG~~~~~~~~~DG---------------~~~~~~~~i~pG~~~~y~~~   63 (75)
                      +++++.|+.|+|.|.|...     ..+|.||+||..+.......|               .+...+..|+|++....+|.
T Consensus       417 ~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~  496 (541)
T TIGR03388       417 IYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFV  496 (541)
T ss_pred             EEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEE
Confidence            4788999999999999741     257999999987653321111               12223455789999999999


Q ss_pred             -CCCeeeEEccCC
Q psy88            64 -ANAGTHFWHAHT   75 (75)
Q Consensus        64 -~~~Gt~~YH~H~   75 (75)
                       ++||.|++|||.
T Consensus       497 adNPG~W~~HCHi  509 (541)
T TIGR03388       497 ADNPGVWAFHCHI  509 (541)
T ss_pred             CCCCeEeeeeccc
Confidence             999999999994

Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.

>TIGR03389 laccase laccase, plant

Probab=98.96  E-value=2.3e-09  Score=76.06  Aligned_cols=72  Identities=19%  Similarity=0.207  Sum_probs=54.1

Q ss_pred             cEEEecCCEEEEEEEeCCC--CCCceEEeCCccccCCCCCCCC---------------CcccccccCCCCEEEEEEc-CC
Q psy88             4 PKNVCEGDRVVVDVRNSMD--GLENTIHWHGIHQRGTQYSDGV---------------PFVTQCPITQGNTFRYQFT-AN   65 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~--~~~~~iH~HG~~~~~~~~~DG~---------------~~~~~~~i~pG~~~~y~~~-~~   65 (75)
                      +++++.|+.|+|.+.|...  ..+|.||+||..+.......|.               +...+..+++++....+|+ ++
T Consensus       416 v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adN  495 (539)
T TIGR03389       416 VVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADN  495 (539)
T ss_pred             EEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCC
Confidence            4788999999999999742  1489999999876533222221               1112455789999999999 99


Q ss_pred             CeeeEEccCC
Q psy88            66 AGTHFWHAHT   75 (75)
Q Consensus        66 ~Gt~~YH~H~   75 (75)
                      ||.|++|||.
T Consensus       496 PG~W~~HCHi  505 (539)
T TIGR03389       496 PGVWFMHCHL  505 (539)
T ss_pred             CeEEEEEecc
Confidence            9999999994

Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.

>PLN02604 oxidoreductase

Probab=98.93  E-value=3.3e-09  Score=75.76  Aligned_cols=72  Identities=18%  Similarity=0.214  Sum_probs=53.8

Q ss_pred             cEEEecCCEEEEEEEeCCC-----CCCceEEeCCccccCCCCCCC---------------CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEGDRVVVDVRNSMD-----GLENTIHWHGIHQRGTQYSDG---------------VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~-----~~~~~iH~HG~~~~~~~~~DG---------------~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .++++.|+.|+|.|.|...     ..+|.||+||..+.......|               .+...+..|+|++....+|.
T Consensus       440 v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~  519 (566)
T PLN02604        440 IYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFR  519 (566)
T ss_pred             EEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEE
Confidence            3788999999999999742     257999999987653321112               11123455789999999999


Q ss_pred             -CCCeeeEEccCC
Q psy88            64 -ANAGTHFWHAHT   75 (75)
Q Consensus        64 -~~~Gt~~YH~H~   75 (75)
                       ++||.|++|||.
T Consensus       520 aDNPG~WlfHCHI  532 (566)
T PLN02604        520 ADNPGVWAFHCHI  532 (566)
T ss_pred             CCCCeEeeEeecc
Confidence             999999999994

>PLN02168 copper ion binding / pectinesterase

Probab=98.90  E-value=5.7e-09  Score=74.40  Aligned_cols=71  Identities=11%  Similarity=0.001  Sum_probs=54.4

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC--------------CCcccccccCCCCEEEEEEc-CCCee
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--------------VPFVTQCPITQGNTFRYQFT-ANAGT   68 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG--------------~~~~~~~~i~pG~~~~y~~~-~~~Gt   68 (75)
                      .++++.|+.|+|.+.|... .+|.||+||..+.......|              .+...+..+++|+-...+|+ ++||.
T Consensus       416 v~~~~~~~~VeiViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~  494 (545)
T PLN02168        416 VVDIHYKDFYHIVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGM  494 (545)
T ss_pred             EEEecCCCEEEEEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeE
Confidence            3688999999999999876 79999999987653211111              11112445789999999999 99999


Q ss_pred             eEEccCC
Q psy88            69 HFWHAHT   75 (75)
Q Consensus        69 ~~YH~H~   75 (75)
                      |++|||.
T Consensus       495 Wl~HCHi  501 (545)
T PLN02168        495 WNVRSQK  501 (545)
T ss_pred             EeeeecC
Confidence            9999993

>PLN02354 copper ion binding / oxidoreductase

Probab=98.89  E-value=3.9e-09  Score=75.27  Aligned_cols=71  Identities=14%  Similarity=0.019  Sum_probs=54.5

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC--------------CCcccccccCCCCEEEEEEc-CCCee
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--------------VPFVTQCPITQGNTFRYQFT-ANAGT   68 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG--------------~~~~~~~~i~pG~~~~y~~~-~~~Gt   68 (75)
                      .++++.|+.|+|.+.|..+ .+|.||+||..+......+|              .+...+..|++++-...+|+ ++||.
T Consensus       419 v~~~~~~~~VeiVi~n~~~-~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGv  497 (552)
T PLN02354        419 VLNITFRTFVEIIFENHEK-SMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGM  497 (552)
T ss_pred             eEEcCCCCEEEEEEeCCCC-CCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeE
Confidence            4677889999999999876 79999999988653322222              11112455788999999999 99999


Q ss_pred             eEEccCC
Q psy88            69 HFWHAHT   75 (75)
Q Consensus        69 ~~YH~H~   75 (75)
                      |++|||.
T Consensus       498 W~~HCHi  504 (552)
T PLN02354        498 WNIRSEN  504 (552)
T ss_pred             Eeeeccc
Confidence            9999994

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=98.88  E-value=1e-08  Score=58.65  Aligned_cols=59  Identities=15%  Similarity=0.109  Sum_probs=39.8

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|+++.|+.++|++.|... .++.+..-++..             ...+.||++.++.|. +.+|+|-|+|-
T Consensus        34 P~~i~v~~G~~v~l~~~N~~~-~~h~~~i~~~~~-------------~~~l~~g~~~~~~f~~~~~G~y~~~C~   93 (104)
T PF13473_consen   34 PSTITVKAGQPVTLTFTNNDS-RPHEFVIPDLGI-------------SKVLPPGETATVTFTPLKPGEYEFYCT   93 (104)
T ss_dssp             S-EEEEETTCEEEEEEEE-SS-S-EEEEEGGGTE-------------EEEE-TT-EEEEEEEE-S-EEEEEB-S
T ss_pred             cCEEEEcCCCeEEEEEEECCC-CcEEEEECCCce-------------EEEECCCCEEEEEEcCCCCEEEEEEcC
Confidence            568999999999999999977 565544433211             134899999999999 99999999994

>PRK10965 multicopper oxidase; Provisional

Probab=98.83  E-value=9.8e-09  Score=72.86  Aligned_cols=70  Identities=14%  Similarity=0.088  Sum_probs=50.3

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-------ccccccCCCCEEEEEEc-----CCCeeeEE
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-------VTQCPITQGNTFRYQFT-----ANAGTHFW   71 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-------~~~~~i~pG~~~~y~~~-----~~~Gt~~Y   71 (75)
                      .++++.|++.+++|.|......|.+|+||..+.... .||.+.       ..+..|+| ++.++.++     +..|.|.|
T Consensus       427 ~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~-~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~  504 (523)
T PRK10965        427 MFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILS-ENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMA  504 (523)
T ss_pred             ceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEE-ecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEE
Confidence            368999999999999997435899999999876542 455431       12344666 55555554     35679999


Q ss_pred             ccCC
Q psy88            72 HAHT   75 (75)
Q Consensus        72 H~H~   75 (75)
                      |||.
T Consensus       505 HCHi  508 (523)
T PRK10965        505 HCHL  508 (523)
T ss_pred             EeCc
Confidence            9994

>PLN02991 oxidoreductase

Probab=98.82  E-value=1.2e-08  Score=72.73  Aligned_cols=71  Identities=13%  Similarity=-0.033  Sum_probs=54.2

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC--------------CCcccccccCCCCEEEEEEc-CCCee
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--------------VPFVTQCPITQGNTFRYQFT-ANAGT   68 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG--------------~~~~~~~~i~pG~~~~y~~~-~~~Gt   68 (75)
                      .+.++.|+.|+|.|.|... .+|.||+||..+......+|              .+...+..|++++....+|. ++||.
T Consensus       411 v~~~~~~~~VeiViqn~~~-~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~  489 (543)
T PLN02991        411 VMQTDYKAFVEIVFENWED-IVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGM  489 (543)
T ss_pred             EEEcCCCCEEEEEEeCCCC-CCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEE
Confidence            3577889999999999877 79999999987653321111              11122455788999999999 99999


Q ss_pred             eEEccCC
Q psy88            69 HFWHAHT   75 (75)
Q Consensus        69 ~~YH~H~   75 (75)
                      |++|||.
T Consensus       490 W~~HCHi  496 (543)
T PLN02991        490 WNLRSEL  496 (543)
T ss_pred             eeeeeCc
Confidence            9999994

>PLN02792 oxidoreductase

Probab=98.80  E-value=1.8e-08  Score=71.80  Aligned_cols=71  Identities=8%  Similarity=0.012  Sum_probs=54.3

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC--------------CCcccccccCCCCEEEEEEc-CCCee
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--------------VPFVTQCPITQGNTFRYQFT-ANAGT   68 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG--------------~~~~~~~~i~pG~~~~y~~~-~~~Gt   68 (75)
                      .++++.|+.|+|.|.|... ..|++|+||..+......+|              .+...+..|+|++-...+|. ++||.
T Consensus       404 v~~~~~~~~VeiViqn~~~-~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGv  482 (536)
T PLN02792        404 VMGAHHNAFLEIIFQNREK-IVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGM  482 (536)
T ss_pred             EEEcCCCCEEEEEEECCCC-CCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEE
Confidence            4678899999999999866 68999999987653321122              11122455788999999999 99999


Q ss_pred             eEEccCC
Q psy88            69 HFWHAHT   75 (75)
Q Consensus        69 ~~YH~H~   75 (75)
                      |++|||.
T Consensus       483 W~~HCh~  489 (536)
T PLN02792        483 WNLRSQF  489 (536)
T ss_pred             EeeeEcc
Confidence            9999993

>PLN02191 L-ascorbate oxidase

Probab=98.79  E-value=2.5e-08  Score=71.50  Aligned_cols=72  Identities=22%  Similarity=0.201  Sum_probs=53.1

Q ss_pred             cEEEecCCEEEEEEEeCC-----CCCCceEEeCCccccCCCCCCC---------------CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEGDRVVVDVRNSM-----DGLENTIHWHGIHQRGTQYSDG---------------VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~-----~~~~~~iH~HG~~~~~~~~~DG---------------~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .++++.|+.|+|.|.|..     ...+|.||+||..+......+|               .+...+..++|++....+|+
T Consensus       440 v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~  519 (574)
T PLN02191        440 IYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFV  519 (574)
T ss_pred             eEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEE
Confidence            356777999999999975     1268999999987653211122               11223455789999999999


Q ss_pred             -CCCeeeEEccCC
Q psy88            64 -ANAGTHFWHAHT   75 (75)
Q Consensus        64 -~~~Gt~~YH~H~   75 (75)
                       ++||.|.+|||.
T Consensus       520 aDNPG~Wl~HCHi  532 (574)
T PLN02191        520 TDNPGVWFFHCHI  532 (574)
T ss_pred             CCCCEEEEEecCc
Confidence             999999999994

>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type

Probab=98.78  E-value=2.3e-08  Score=71.11  Aligned_cols=72  Identities=18%  Similarity=0.206  Sum_probs=50.9

Q ss_pred             cEEEecCCEEEEEEEeCC-------CCCCceEEeCCccccCCCCCCCC--------------C-ccccccc---------
Q psy88             4 PKNVCEGDRVVVDVRNSM-------DGLENTIHWHGIHQRGTQYSDGV--------------P-FVTQCPI---------   52 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~-------~~~~~~iH~HG~~~~~~~~~DG~--------------~-~~~~~~i---------   52 (75)
                      +++++.|+.|+|.|.|..       ...+|+||+||..+......+|.              | ...+..+         
T Consensus       413 ~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~  492 (538)
T TIGR03390       413 AFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVP  492 (538)
T ss_pred             EEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccc
Confidence            467899999999999974       12689999999775533222331              1 1112223         


Q ss_pred             -CCCCEEEEEEc-CCCeeeEEccCC
Q psy88            53 -TQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus        53 -~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                       .|+.....+|. ++||.|.+|||.
T Consensus       493 ~~~~~~~~ir~~~dNPG~W~~HCHi  517 (538)
T TIGR03390       493 GAPAGWRAWRIRVTNPGVWMMHCHI  517 (538)
T ss_pred             cCCCceEEEEEEcCCCeeEEEeccc
Confidence             36778888899 999999999994

This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.

>TIGR02656 cyanin_plasto plastocyanin

Probab=98.73  E-value=1.4e-07  Score=53.73  Aligned_cols=67  Identities=12%  Similarity=0.115  Sum_probs=42.9

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcc--cccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV--TQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~--~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..|++++||+|+  ++|... .+|++.+.....+... .+..+..  +...+.||+++++.|.. +|+|.|+|
T Consensus        16 P~~i~v~~G~~V~--~~N~~~-~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~-~G~y~y~C   84 (99)
T TIGR02656        16 PAKISIAAGDTVE--WVNNKG-GPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST-PGTYTFYC   84 (99)
T ss_pred             CCEEEECCCCEEE--EEECCC-CCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC-CEEEEEEc
Confidence            4679999999865  558765 6888776543222110 0000001  12246899999887775 89999999

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

>PLN00044 multi-copper oxidase-related protein; Provisional

Probab=98.67  E-value=5.4e-08  Score=70.08  Aligned_cols=70  Identities=13%  Similarity=-0.045  Sum_probs=53.6

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC--------------CCcccccccCCCCEEEEEEc-CCCee
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG--------------VPFVTQCPITQGNTFRYQFT-ANAGT   68 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG--------------~~~~~~~~i~pG~~~~y~~~-~~~Gt   68 (75)
                      .++++.++.|+|.|.|... .+|+||+||..+.......|              .+...+..+++|+-...+|. ++||.
T Consensus       434 v~~~~~n~~VeiV~qn~~~-~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~  512 (596)
T PLN00044        434 IINGTYKGFMEIIFQNNAT-NVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGI  512 (596)
T ss_pred             EEEcCCCCEEEEEEeCCCC-CCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEE
Confidence            3577889999999999865 69999999987653221121              11223455789999999999 99999


Q ss_pred             eEEccC
Q psy88            69 HFWHAH   74 (75)
Q Consensus        69 ~~YH~H   74 (75)
                      |+.|||
T Consensus       513 W~lHCH  518 (596)
T PLN00044        513 WNLRVE  518 (596)
T ss_pred             ehhhcc
Confidence            999999

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.64  E-value=1.3e-07  Score=68.25  Aligned_cols=62  Identities=27%  Similarity=0.290  Sum_probs=47.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++.++|....+..+   ||+..+.    .|...    -+.||++.+..|+ ++||.|||+|.
T Consensus       554 p~~i~Vk~GDeVt~~lTN~d~~~DVi---HGF~Ip~----~nI~~----dv~PG~t~svtF~adkPGvy~~~Ct  616 (635)
T PRK02888        554 LREFTVKQGDEVTVIVTNLDKVEDLT---HGFAIPN----YGVNM----EVAPQATASVTFTADKPGVYWYYCT  616 (635)
T ss_pred             CceEEecCCCEEEEEEEeCCcccccc---cceeecc----cCccE----EEcCCceEEEEEEcCCCEEEEEECC
Confidence            56799999999999999963312233   7776643    22222    3789999999999 99999999995

>TIGR02657 amicyanin amicyanin

Probab=98.59  E-value=5.9e-07  Score=49.58  Aligned_cols=62  Identities=18%  Similarity=0.208  Sum_probs=40.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|+++.||+|+  +.|... .+|++++..-....   .+    .....+.||+++++.| +.+|+|-|+|=
T Consensus        10 P~~i~v~~GdtVt--~~N~d~-~~Hnv~~~~g~~~~---~~----~~~~~~~~g~~~~~tf-~~~G~y~y~C~   71 (83)
T TIGR02657        10 TPELHVKVGDTVT--WINREA-MPHNVHFVAGVLGE---AA----LKGPMMKKEQAYSLTF-TEAGTYDYHCT   71 (83)
T ss_pred             CCEEEECCCCEEE--EEECCC-CCccEEecCCCCcc---cc----ccccccCCCCEEEEEC-CCCEEEEEEcC
Confidence            5679999999975  578866 68888765421110   11    0111256777777655 56899999993

Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=98.54  E-value=1.9e-07  Score=62.66  Aligned_cols=71  Identities=18%  Similarity=0.133  Sum_probs=56.6

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .+.++.|+.+++++.|........+|.+|...... ..||.+.      .....|.||+++...++ +++|.|+.+||.
T Consensus       203 ~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v-~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~  280 (311)
T TIGR02376       203 DNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYV-WVTGKFANPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHN  280 (311)
T ss_pred             CcccccCCcEEEEEEcCCCCCCCCCeEecCCceEE-EECCcccCCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcH
Confidence            46799999999999998764668899999776533 3577532      23456899999999999 889999999983

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>PRK02710 plastocyanin; Provisional

Probab=98.43  E-value=2.7e-06  Score=49.91  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=41.4

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..|+++.||+|+  +.|... .+|++.+.|..        +.. .+...+.||+++++.|.. +|+|-|+|
T Consensus        46 P~~i~v~~Gd~V~--~~N~~~-~~H~v~~~~~~--------~~~-~~~~~~~pg~t~~~tF~~-~G~y~y~C  104 (119)
T PRK02710         46 PSTLTIKAGDTVK--WVNNKL-APHNAVFDGAK--------ELS-HKDLAFAPGESWEETFSE-AGTYTYYC  104 (119)
T ss_pred             CCEEEEcCCCEEE--EEECCC-CCceEEecCCc--------ccc-ccccccCCCCEEEEEecC-CEEEEEEc
Confidence            4679999999855  568766 68887765421        100 011237899999988886 89999999

>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=98.39  E-value=8.4e-07  Score=54.10  Aligned_cols=71  Identities=18%  Similarity=0.191  Sum_probs=55.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcc----cccccCCCCEEEEEEc-CC-CeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV----TQCPITQGNTFRYQFT-AN-AGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~----~~~~i~pG~~~~y~~~-~~-~Gt~~YH~   73 (75)
                      ..+|.+++|++++++|.|........++..|..+... ..||.+..    ....|.||++++..++ ++ +|.||..+
T Consensus        59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Vi-a~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~  135 (159)
T PF00394_consen   59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVI-AADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRA  135 (159)
T ss_dssp             SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEE-EETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEE
T ss_pred             cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEe-eeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEE
Confidence            4689999999999999999875567889999866543 47886532    3455899999999999 65 99999876

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....

>PRK10883 FtsI repressor; Provisional

Probab=98.35  E-value=1.1e-06  Score=61.77  Aligned_cols=66  Identities=11%  Similarity=0.102  Sum_probs=46.6

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-------ccccccCCCCEEEEEEc-CCCe----eeEE
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-------VTQCPITQGNTFRYQFT-ANAG----THFW   71 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-------~~~~~i~pG~~~~y~~~-~~~G----t~~Y   71 (75)
                      .++++.|++.++++.|.   .+|.||.||..+.... .||.+.       -.+..| + ++.+..++ +..+    .|+|
T Consensus       376 ~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~-~~G~~~~~~~~gwkDTV~v-~-~~v~i~~~f~~~~~~~~~~m~  449 (471)
T PRK10883        376 DVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRN-VNGAMPFPEDRGWKDTVWV-D-GQVELLVYFGQPSWAHFPFLF  449 (471)
T ss_pred             eeecCCCCEEEEEEECC---CCcCEeECCccEEEEE-ecCCCCCccccCcCcEEEc-C-CeEEEEEEecCCCCCCCcEEe
Confidence            35799999999999996   4799999999877542 455421       123334 3 45777777 5444    7999


Q ss_pred             ccCC
Q psy88            72 HAHT   75 (75)
Q Consensus        72 H~H~   75 (75)
                      |||.
T Consensus       450 HCHi  453 (471)
T PRK10883        450 YSQT  453 (471)
T ss_pred             eccc
Confidence            9994

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=98.30  E-value=1.8e-06  Score=48.98  Aligned_cols=68  Identities=21%  Similarity=0.179  Sum_probs=40.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCC-CCCcccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSD-GVPFVTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~D-G~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..|++++||+|+  +.|... .+|++.+=--..+.....+ ..+......+.||+++++.|. .+|+|.|+|
T Consensus        16 P~~i~V~~G~tV~--~~n~~~-~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~-~~G~y~y~C   84 (99)
T PF00127_consen   16 PSEITVKAGDTVT--FVNNDS-MPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT-KPGTYEYYC   84 (99)
T ss_dssp             SSEEEEETTEEEE--EEEESS-SSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE-SSEEEEEEE
T ss_pred             CCEEEECCCCEEE--EEECCC-CCceEEEecccccccccccccCccccceecCCCCEEEEEeC-CCeEEEEEc
Confidence            4679999999865  555444 6777765221000000000 000001234779999888887 889999999

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....

>KOG1263|consensus

Probab=98.14  E-value=6.4e-06  Score=59.25  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=52.9

Q ss_pred             cEEEecCCEEEEEEEeCCCC--CCceEEeCCccccCCC-----CCC---C--------CCcccccccCCCCEEEEEEc-C
Q psy88             4 PKNVCEGDRVVVDVRNSMDG--LENTIHWHGIHQRGTQ-----YSD---G--------VPFVTQCPITQGNTFRYQFT-A   64 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~--~~~~iH~HG~~~~~~~-----~~D---G--------~~~~~~~~i~pG~~~~y~~~-~   64 (75)
                      .++++-++.|+|.+.|....  ..+++|+||..+....     |..   -        .+...+.-|+||.-...+|. +
T Consensus       431 v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ad  510 (563)
T KOG1263|consen  431 VMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVAD  510 (563)
T ss_pred             EEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcC
Confidence            36888999999999998652  3577799998754221     111   1        01112455899999999999 9


Q ss_pred             CCeeeEEccCC
Q psy88            65 NAGTHFWHAHT   75 (75)
Q Consensus        65 ~~Gt~~YH~H~   75 (75)
                      +||.|.+|||.
T Consensus       511 NPG~W~~HCHi  521 (563)
T KOG1263|consen  511 NPGVWLMHCHI  521 (563)
T ss_pred             CCcEEEEEEec
Confidence            99999999994

>TIGR03102 halo_cynanin halocyanin domain

Probab=97.98  E-value=0.0001  Score=43.28  Aligned_cols=60  Identities=18%  Similarity=0.212  Sum_probs=37.9

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..|+++.||+|+  ++|+.+..+|++..-+    ... .|    .......+|+++++.| +.+|+|-|+|
T Consensus        41 P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~-f~----s~~~~~~~G~t~s~Tf-~~~G~Y~Y~C  100 (115)
T TIGR03102        41 PPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGD-LD----ESERVSEEGTTYEHTF-EEPGIYLYVC  100 (115)
T ss_pred             CCEEEECCCCEEE--EEECCCCCCEEEEECC----CCC-cc----ccccccCCCCEEEEEe-cCCcEEEEEc
Confidence            4678999999977  5554332566665311    000 11    0111257899998888 5689999999

Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.

>TIGR02375 pseudoazurin pseudoazurin

Probab=97.79  E-value=0.0001  Score=43.37  Aligned_cols=58  Identities=10%  Similarity=0.116  Sum_probs=33.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEe-CCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHW-HGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~-HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..|+++.||+|++...|.    +++..+ -+.      ..+|....   ...+|+++++.| +.+|+|-|.|
T Consensus        14 P~~v~V~~GdTV~f~n~d~----~Hnv~~~~~~------~p~g~~~~---~s~~g~~~~~tF-~~~G~Y~Y~C   72 (116)
T TIGR02375        14 PAYIRAAPGDTVTFVPTDK----GHNVETIKGM------IPEGAEAF---KSKINEEYTVTV-TEEGVYGVKC   72 (116)
T ss_pred             CCEEEECCCCEEEEEECCC----CeeEEEccCC------CcCCcccc---cCCCCCEEEEEe-CCCEEEEEEc
Confidence            5679999999977765543    455443 111      11332211   123455544444 6789999999

Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=97.63  E-value=0.00051  Score=41.10  Aligned_cols=60  Identities=17%  Similarity=0.131  Sum_probs=36.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +-.|+++.||+|+  +.|... ..|+++.=+..     ..+|...   ....+|+++++.| +.+|.|-|.|
T Consensus        53 PA~v~v~pGDTVt--w~~~d~-~~Hnv~~~~~~-----~~~g~~~---~~~~~~~s~~~Tf-e~~G~Y~Y~C  112 (128)
T COG3794          53 PAEVTVKPGDTVT--WVNTDS-VGHNVTAVGGM-----DPEGSGT---LKAGINESFTHTF-ETPGEYTYYC  112 (128)
T ss_pred             CcEEEECCCCEEE--EEECCC-CCceEEEeCCC-----Ccccccc---cccCCCcceEEEe-cccceEEEEe
Confidence            4578999999965  567765 57777653332     1122221   1233445555555 4589999999

>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o

Probab=97.38  E-value=0.0016  Score=38.34  Aligned_cols=58  Identities=17%  Similarity=0.173  Sum_probs=42.6

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      ...|++..|+.|++.+++..  .-     ||+..+..    |.    ...+.||+.....|. +.+|+|...|-
T Consensus        45 ~~~l~lp~g~~v~~~ltS~D--Vi-----Hsf~ip~~----~~----k~d~~PG~~~~~~~~~~~~G~y~~~C~  103 (120)
T PF00116_consen   45 DNELVLPAGQPVRFHLTSED--VI-----HSFWIPEL----GI----KMDAIPGRTNSVTFTPDKPGTYYGQCA  103 (120)
T ss_dssp             SSEEEEETTSEEEEEEEESS--S------EEEEETTC----TE----EEEEBTTCEEEEEEEESSSEEEEEEE-
T ss_pred             cceecccccceEeEEEEcCC--cc-----cccccccc----Cc----ccccccccceeeeeeeccCCcEEEcCc
Confidence            35789999999999999964  23     45544321    11    123679999999999 99999999984

; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....

>TIGR03094 sulfo_cyanin sulfocyanin

Probab=97.16  E-value=0.0055  Score=38.78  Aligned_cols=69  Identities=16%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccC------CCCCCCCCcc----c-----ccccCCCCEEEEEEc-CC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRG------TQYSDGVPFV----T-----QCPITQGNTFRYQFT-AN   65 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~------~~~~DG~~~~----~-----~~~i~pG~~~~y~~~-~~   65 (75)
                      .++|.+-.|=+|.|+|.|... .+|++-.  +....      ....||....    +     ..-+.+|++..-.|. -+
T Consensus        84 ~mtIyiPaGw~V~V~f~N~e~-~pHnl~i--v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~~  160 (195)
T TIGR03094        84 AMTIYLPAGWNVYVTFTNYES-LPHNLKL--LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDTS  160 (195)
T ss_pred             ceEEEEeCCCEEEEEEEcCCC-CCccEEE--ecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccCC
Confidence            578999999999999999987 7877654  22111      1234553211    1     133568889777777 89


Q ss_pred             CeeeEEcc
Q psy88            66 AGTHFWHA   73 (75)
Q Consensus        66 ~Gt~~YH~   73 (75)
                      +|+|||=|
T Consensus       161 ~G~YwlvC  168 (195)
T TIGR03094       161 AGKYWLVC  168 (195)
T ss_pred             CeeEEEEc
Confidence            99999988

Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus

Probab=97.15  E-value=0.0059  Score=38.93  Aligned_cols=71  Identities=18%  Similarity=0.122  Sum_probs=47.9

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeC--Ccccc--CCCCCCCCCc----c-----cccccCCCCEEEEEEc-CCCe
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWH--GIHQR--GTQYSDGVPF----V-----TQCPITQGNTFRYQFT-ANAG   67 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~H--G~~~~--~~~~~DG~~~----~-----~~~~i~pG~~~~y~~~-~~~G   67 (75)
                      .++|.+-.|-+|.|+|+|... .+|++=.=  +...+  .....||...    .     ....|.+|++..-.|. -++|
T Consensus        85 ~m~i~VPAGw~V~i~f~N~~~-l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG  163 (196)
T PF06525_consen   85 QMTIYVPAGWNVQITFTNQES-LPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAG  163 (196)
T ss_pred             cEEEEEcCCCEEEEEEEcCCC-CCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCc
Confidence            478999999999999999876 67654321  11111  1223565221    0     1234778999988887 8899


Q ss_pred             eeEEcc
Q psy88            68 THFWHA   73 (75)
Q Consensus        68 t~~YH~   73 (75)
                      .||+=|
T Consensus       164 ~YwlvC  169 (196)
T PF06525_consen  164 YYWLVC  169 (196)
T ss_pred             eEEEEc
Confidence            999988

The most closely related proteins characterised as functionally different are the rusticyanins.

>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]

Probab=96.70  E-value=0.0034  Score=44.87  Aligned_cols=60  Identities=23%  Similarity=0.306  Sum_probs=39.0

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEcc
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHA   73 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~   73 (75)
                      .++.+++||+|++.+.|-.. ..-.+  ||...+    +-|+..    .+.|-++-.|.|. +.+|.+||.|
T Consensus       558 ~ef~Vkq~DEVt~l~tnld~-Ved~t--hgfv~p----~~~v~~----~v~pq~tasvtf~a~kpgv~w~yc  618 (637)
T COG4263         558 TEFKVKQGDEVTVLTTNLDE-VEDLT--HGFVIP----NYGVNM----EVKPQRTASVTFYADKPGVAWYYC  618 (637)
T ss_pred             EEEEEecCcEEEEEecccce-ecccc--ceeeec----cCceEE----EEccCCceEEEEEccCCeeeehhh
Confidence            45667777777777777644 22222  454433    223222    2778888899999 9999999987

>TIGR02695 azurin azurin

Probab=96.69  E-value=0.015  Score=34.63  Aligned_cols=70  Identities=14%  Similarity=0.151  Sum_probs=41.8

Q ss_pred             cEEEec-CCEEEEEEEeCCCCCCceEEeCCccccC--------------------CCCCCCCCcccccccCCCCEEEEEE
Q psy88             4 PKNVCE-GDRVVVDVRNSMDGLENTIHWHGIHQRG--------------------TQYSDGVPFVTQCPITQGNTFRYQF   62 (75)
Q Consensus         4 ~i~~~~-Gd~v~i~~~N~~~~~~~~iH~HG~~~~~--------------------~~~~DG~~~~~~~~i~pG~~~~y~~   62 (75)
                      .|.|+. +.+|+|+|+|... .|...--|-+....                    .+..|-.-...+..|.|||+.+..|
T Consensus        17 ~i~V~a~~k~vtv~l~h~G~-lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF   95 (125)
T TIGR02695        17 SISVPKSCKEFTVNLKHTGK-LPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF   95 (125)
T ss_pred             EEEEcCCCcEEEEEEecCCc-CchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence            678887 5899999999854 44322223211110                    0101100011244588999999999


Q ss_pred             c-C--CCee-eEEccC
Q psy88            63 T-A--NAGT-HFWHAH   74 (75)
Q Consensus        63 ~-~--~~Gt-~~YH~H   74 (75)
                      . .  .+|. |-|-|-
T Consensus        96 ~~~~l~~g~~Y~f~CS  111 (125)
T TIGR02695        96 DVSKLSAGEDYTFFCS  111 (125)
T ss_pred             ECCCCCCCCcceEEEc
Confidence            8 4  6885 999883

Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.

>TIGR02866 CoxB cytochrome c oxidase, subunit II

Probab=95.42  E-value=0.12  Score=32.65  Aligned_cols=57  Identities=16%  Similarity=0.081  Sum_probs=42.3

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      ..|.+..|+.|++.+++..-  -     ||+..+..    |+    +..+.||..-+..|. +++|+|...|-
T Consensus       117 ~~l~vp~g~~v~~~~ts~DV--~-----Hsf~ip~~----~~----k~da~PG~~~~~~~~~~~~G~y~~~c~  174 (201)
T TIGR02866       117 NELVVPAGTPVRLQVTSKDV--I-----HSFWVPEL----GG----KIDAIPGQYNALWFNADEPGVYYGYCA  174 (201)
T ss_pred             CEEEEEcCCEEEEEEEeCch--h-----hccccccc----Cc----eEEecCCcEEEEEEEeCCCEEEEEEeh
Confidence            47899999999999998632  2     66655421    21    123668999999999 99999998873

Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.

>PRK13202 ureB urease subunit beta; Reviewed

Probab=95.10  E-value=0.13  Score=29.70  Aligned_cols=60  Identities=17%  Similarity=0.135  Sum_probs=39.2

Q ss_pred             ccEEEecC--CEEEEEEEeCCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             3 YPKNVCEG--DRVVVDVRNSMDGLENTI--HWHGIHQRGTQYSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         3 ~~i~~~~G--d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      -.|++++|  ++++|.++|..+ +|..+  |+|=+........|     |    .|.-+...+.||++++.++.
T Consensus        11 ~~I~ln~grr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV   83 (104)
T PRK13202         11 GDIEMNAAALSRLQMRIINAGD-RPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV   83 (104)
T ss_pred             CCEEeCCCCCceEEEEEEeCCC-CceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence            46899999  589999999999 77655  55533322111111     1    22223455889999999887

>PRK13203 ureB urease subunit beta; Reviewed

Probab=94.33  E-value=0.28  Score=28.32  Aligned_cols=60  Identities=22%  Similarity=0.265  Sum_probs=39.1

Q ss_pred             ccEEEecC-CEEEEEEEeCCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             3 YPKNVCEG-DRVVVDVRNSMDGLENTI--HWHGIHQRGTQYSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         3 ~~i~~~~G-d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      ..|++++| ++++|.++|..+ +|..+  |+|=+........|     |    .|.-+...+.||++++.++.
T Consensus        11 ~~I~ln~gr~~~~l~V~NtGD-RPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV   82 (102)
T PRK13203         11 GEIELNAGRETVTLTVANTGD-RPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV   82 (102)
T ss_pred             CCEEeCCCCCEEEEEEEeCCC-CceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence            46788888 889999999999 78655  55543322111111     1    22223455889999999887

>TIGR00192 urease_beta urease, beta subunit

Probab=94.30  E-value=0.28  Score=28.21  Aligned_cols=60  Identities=23%  Similarity=0.277  Sum_probs=38.9

Q ss_pred             ccEEEecC-CEEEEEEEeCCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             3 YPKNVCEG-DRVVVDVRNSMDGLENTI--HWHGIHQRGTQYSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         3 ~~i~~~~G-d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      -.|+++.| ++++|.++|..+ +|..+  |+|=+........|     |    .|.-+...+.||++++.++.
T Consensus        11 ~~I~ln~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV   82 (101)
T TIGR00192        11 GDITINEGRKTVSVKVKNTGD-RPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV   82 (101)
T ss_pred             CCEEeCCCCcEEEEEEEeCCC-cceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence            35788888 889999999999 77655  55543322111111     1    22223455899999999887

In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.

>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo

Probab=93.89  E-value=0.34  Score=26.65  Aligned_cols=32  Identities=25%  Similarity=0.480  Sum_probs=17.7

Q ss_pred             CCCCCCc---ccccccCCCCEEEEEEc---CC--CeeeEE
Q psy88            40 YSDGVPF---VTQCPITQGNTFRYQFT---AN--AGTHFW   71 (75)
Q Consensus        40 ~~DG~~~---~~~~~i~pG~~~~y~~~---~~--~Gt~~Y   71 (75)
                      |++|...   +....|+||++.+|++.   ..  +|+|..
T Consensus        41 wS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~   80 (82)
T PF12690_consen   41 WSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL   80 (82)
T ss_dssp             TTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred             ecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence            4555332   23456899999999988   33  788753

It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.

>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide

Probab=93.88  E-value=0.42  Score=27.52  Aligned_cols=60  Identities=20%  Similarity=0.268  Sum_probs=38.6

Q ss_pred             ccEEEecC-CEEEEEEEeCCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             3 YPKNVCEG-DRVVVDVRNSMDGLENTI--HWHGIHQRGTQYSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         3 ~~i~~~~G-d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      -.|++++| ++++|.++|..+ +|..+  |+|=+........|     |    .|.-+...+.||++++.++.
T Consensus        11 ~~I~lN~gr~~~~l~V~NtGD-RpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV   82 (101)
T cd00407          11 GDIELNAGREAVTLKVKNTGD-RPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV   82 (101)
T ss_pred             CCeEeCCCCCEEEEEEEeCCC-cceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence            35778888 789999999998 77655  55543322111111     1    22223455889999999887

Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.

>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional

Probab=93.35  E-value=0.59  Score=32.65  Aligned_cols=60  Identities=13%  Similarity=0.040  Sum_probs=39.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC-cccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP-FVTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~-~~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..+.+..|+ +++.++|... .++-+-.          .+|.- ...-..|.||.+.++.++-.+|+|-|+|
T Consensus        43 p~~~tVpAG~-~~f~V~N~~~-~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L~pGtY~~~C  103 (375)
T PRK10378         43 PMTLTVNAGK-TQFIIQNHSQ-KALEWEI----------LKGVMVVEERENIAPGFSQKMTANLQPGEYDMTC  103 (375)
T ss_pred             cCceeeCCCC-EEEEEEeCCC-CcceEEe----------eccccccccccccCCCCceEEEEecCCceEEeec
Confidence            4567888996 8888899876 4433211          01110 0011358999998887665699999999

>PRK13201 ureB urease subunit beta; Reviewed

Probab=93.02  E-value=0.6  Score=28.17  Aligned_cols=60  Identities=17%  Similarity=0.239  Sum_probs=38.8

Q ss_pred             ccEEEecC-CEEEEEEEeCCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             3 YPKNVCEG-DRVVVDVRNSMDGLENTI--HWHGIHQRGTQYSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         3 ~~i~~~~G-d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      -.|+++.| ++++|.++|..+ +|..+  |+|=+........|     |    .|.-+...+.||++++.++.
T Consensus        11 ~~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV   82 (136)
T PRK13201         11 TEVEINNHHPETVIEVENTGD-RPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV   82 (136)
T ss_pred             CCeEeCCCCCEEEEEEEeCCC-cceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence            35788888 889999999998 77655  55533322111111     1    22223456889999999887

>PRK13198 ureB urease subunit beta; Reviewed

Probab=93.00  E-value=0.54  Score=29.02  Aligned_cols=60  Identities=20%  Similarity=0.211  Sum_probs=39.0

Q ss_pred             ccEEEecC-CEEEEEEEeCCCCCCceE--EeCCccccCCCC-----CCC----CCcccccccCCCCEEEEEEc
Q psy88             3 YPKNVCEG-DRVVVDVRNSMDGLENTI--HWHGIHQRGTQY-----SDG----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         3 ~~i~~~~G-d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~-----~DG----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      -+|.+++| ++++|.+.|..+ +|.-+  |+|=+.......     .-|    .|.-+...+.||++++.++.
T Consensus        39 g~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV  110 (158)
T PRK13198         39 TPITFNENKPVTKVKVRNTGD-RPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI  110 (158)
T ss_pred             CCeEeCCCCcEEEEEEEeCCC-CceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence            35888888 899999999998 77655  555333221111     111    22223455889999999887

>PRK13205 ureB urease subunit beta; Reviewed

Probab=92.93  E-value=0.57  Score=28.93  Aligned_cols=60  Identities=18%  Similarity=0.211  Sum_probs=38.7

Q ss_pred             ccEEEecC-CEEEEEEEeCCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             3 YPKNVCEG-DRVVVDVRNSMDGLENTI--HWHGIHQRGTQYSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         3 ~~i~~~~G-d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      -.|.+++| ++++|.++|..+ +|..+  |+|=+........|     |    .|.-+...+.||++++.++.
T Consensus        11 g~IelN~GR~~i~L~V~NtGD-RPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV   82 (162)
T PRK13205         11 ESLTGNVGREAKTIEIINTGD-RPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV   82 (162)
T ss_pred             CCeEeCCCCcEEEEEEEeCCC-CceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence            35788888 889999999998 78665  55533222111111     1    22223455889999999887

>PRK13204 ureB urease subunit beta; Reviewed

Probab=92.88  E-value=0.56  Score=28.98  Aligned_cols=60  Identities=25%  Similarity=0.329  Sum_probs=38.9

Q ss_pred             ccEEEecC-CEEEEEEEeCCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             3 YPKNVCEG-DRVVVDVRNSMDGLENTI--HWHGIHQRGTQYSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         3 ~~i~~~~G-d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      -.|+++.| ++++|.+.|..+ +|.-+  |+|=+........|     |    .|.-+...+.||++++.++.
T Consensus        34 ~~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV  105 (159)
T PRK13204         34 DPIEINQGRPRTTLTVRNTGD-RPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV  105 (159)
T ss_pred             CCeEeCCCCcEEEEEEEeCCC-CceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence            35788888 889999999998 77655  55543322111111     1    22223455889999999887

>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]

Probab=92.77  E-value=0.37  Score=34.87  Aligned_cols=60  Identities=7%  Similarity=-0.020  Sum_probs=46.6

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEcc
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHA   73 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~   73 (75)
                      ++.-+++++.+++.++|...   .+.-.||+..-    .|+..+.    +.|......+|. +++|++||.|
T Consensus       548 ~~staps~~l~ef~Vkq~DE---Vt~l~tnld~V----ed~thgf----v~p~~~v~~~v~pq~tasvtf~a  608 (637)
T COG4263         548 MTSTAPSFGLTEFKVKQGDE---VTVLTTNLDEV----EDLTHGF----VIPNYGVNMEVKPQRTASVTFYA  608 (637)
T ss_pred             EeeccCCCceEEEEEecCcE---EEEEeccccee----cccccee----eeccCceEEEEccCCceEEEEEc
Confidence            45567889999999999753   45666888643    4766654    778899999999 9999999987

>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]

Probab=89.76  E-value=2.9  Score=27.59  Aligned_cols=57  Identities=16%  Similarity=0.035  Sum_probs=41.5

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      ..|.+..|..|++.++-..  .-     ||+..+..    |.    +..+-||......++ +++|+|.-.|.
T Consensus       137 n~l~lPv~~~V~f~ltS~D--Vi-----HsF~IP~l----~~----k~d~iPG~~~~~~~~~~~~G~Y~g~Ca  194 (247)
T COG1622         137 NELVLPVGRPVRFKLTSAD--VI-----HSFWIPQL----GG----KIDAIPGMTTELWLTANKPGTYRGICA  194 (247)
T ss_pred             ceEEEeCCCeEEEEEEech--hc-----eeEEecCC----Cc----eeeecCCceEEEEEecCCCeEEEEEcH
Confidence            5789999999999988763  22     55554421    11    223678988888888 99999998884

>PRK13192 bifunctional urease subunit gamma/beta; Reviewed

Probab=89.37  E-value=2.1  Score=27.69  Aligned_cols=60  Identities=22%  Similarity=0.231  Sum_probs=38.5

Q ss_pred             ccEEEecC-CEEEEEEEeCCCCCCceE--EeCCccccCCCCC-----CC----CCcccccccCCCCEEEEEEc
Q psy88             3 YPKNVCEG-DRVVVDVRNSMDGLENTI--HWHGIHQRGTQYS-----DG----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         3 ~~i~~~~G-d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~~-----DG----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      -.|.+++| +++.+.++|..+ +|.-+  |+|=+.....-..     -|    .|.-+...+.||++++.++.
T Consensus       120 ~~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV  191 (208)
T PRK13192        120 GEIELNAGRPAVTLDVTNTGD-RPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV  191 (208)
T ss_pred             CCeeeCCCCCEEEEEEEeCCC-CceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence            35788888 889999999998 77655  5553322211111     11    22223455889999999887

>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein

Probab=88.71  E-value=3  Score=23.66  Aligned_cols=52  Identities=17%  Similarity=0.304  Sum_probs=31.1

Q ss_pred             EEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88            14 VVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus        14 ~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      .|.+.|.+. ....|..|=-.-    ..|    +....+.||+.+.++|. +-.|+-.|-|+
T Consensus         2 ~V~I~N~L~-~~~~L~vhC~S~----d~D----lg~~~l~~g~~~~~~F~~~~~~~t~f~C~   54 (110)
T PF05938_consen    2 HVVIINNLG-PGKILTVHCKSK----DDD----LGWHVLKPGQSYSFSFRDNFFGTTLFWCH   54 (110)
T ss_pred             EEEEEECCC-CCCeEEEEeeCC----Ccc----CCCEECCCCCEEEEEEecCcCCceeEEEE
Confidence            478899985 344443332211    122    11224899999999999 65566666664

Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].

>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3

Probab=88.60  E-value=0.64  Score=26.74  Aligned_cols=59  Identities=20%  Similarity=0.232  Sum_probs=31.4

Q ss_pred             cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .|.+++| ++++|.+.|..| +|..+=.|=.++..++  ..|     |    .|.-+...+.||++++.++.
T Consensus        11 ~I~lN~gr~~~~l~V~N~GD-RPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV   81 (100)
T PF00699_consen   11 DIELNAGRERITLEVTNTGD-RPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV   81 (100)
T ss_dssp             EEETTTTSEEEEEEEEE-SS-S-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred             cEEecCCCcEEEEEEEeCCC-cceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence            4666666 578999999999 8876633332222211  111     1    12223455889999999887

5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....

>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria

Probab=87.56  E-value=0.89  Score=27.43  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             ccccCCCCEEEEEEc-----CCCeeeEEcc
Q psy88            49 QCPITQGNTFRYQFT-----ANAGTHFWHA   73 (75)
Q Consensus        49 ~~~i~pG~~~~y~~~-----~~~Gt~~YH~   73 (75)
                      ..||+||.+.+..+.     ...|+|.|.|
T Consensus        96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v  125 (146)
T PF10989_consen   96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNV  125 (146)
T ss_pred             CCCCCCCCEEEEEEEeeeCCCCCCeEEEEE
Confidence            568999999999995     3469999876

>PRK13986 urease subunit alpha; Provisional

Probab=86.40  E-value=3.6  Score=26.90  Aligned_cols=59  Identities=19%  Similarity=0.169  Sum_probs=38.0

Q ss_pred             cEEEecC-CEEEEEEEeCCCCCCceE--EeCCccccCCCCC-----CC----CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEG-DRVVVDVRNSMDGLENTI--HWHGIHQRGTQYS-----DG----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~G-d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~~-----DG----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .|.+++| +++++.++|..+ +|.-+  |+|=+.....-..     -|    .|.-+...+.||++++.++.
T Consensus       117 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV  187 (225)
T PRK13986        117 DITINAGKKAVSVKVKNVGD-RPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI  187 (225)
T ss_pred             CeecCCCCcEEEEEEEeCCC-CceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence            5788888 889999999998 77655  5553332211111     11    22223455889999999887

>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]

Probab=85.61  E-value=5.8  Score=24.65  Aligned_cols=67  Identities=13%  Similarity=0.107  Sum_probs=42.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccC-----------CCCCCCCCcccccccCCCCEEEEEEc-CCCeee
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRG-----------TQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTH   69 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~-----------~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~   69 (75)
                      +-.+.++.|++++..+.|... -   .|=-.+..+.           .+..++-. .....+.||++-...|. ..+|.|
T Consensus        62 p~~~~v~aG~tv~~v~~n~~e-l---~hef~~~~~~~~~~~~~~~~~~~Dme~d~-~~~v~L~PG~s~elvv~ft~~g~y  136 (158)
T COG4454          62 PSSFEVKAGETVRFVLKNEGE-L---KHEFTMDAPDKNLEHVTHMILADDMEHDD-PNTVTLAPGKSGELVVVFTGAGKY  136 (158)
T ss_pred             CCcccccCCcEEeeeecCccc-c---eEEEeccCccccchhHHHhhhCCccccCC-cceeEeCCCCcEEEEEEecCCccE
Confidence            456789999999999999764 1   1211111110           01122211 12345899999999999 889999


Q ss_pred             EEcc
Q psy88            70 FWHA   73 (75)
Q Consensus        70 ~YH~   73 (75)
                      -+-|
T Consensus       137 e~~C  140 (158)
T COG4454         137 EFAC  140 (158)
T ss_pred             EEEe
Confidence            8877

>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]

Probab=85.13  E-value=5.3  Score=23.08  Aligned_cols=59  Identities=20%  Similarity=0.288  Sum_probs=35.4

Q ss_pred             cEEEecC-CEEEEEEEeCCCCCCceE--EeCCccccCCCCCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEG-DRVVVDVRNSMDGLENTI--HWHGIHQRGTQYSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~G-d~v~i~~~N~~~~~~~~i--H~HG~~~~~~~~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .|++++| .++.|.+.|..+ +|.-+  |+|=.........|     |    .|.-+.....||+.++.++.
T Consensus        12 ~IelN~gr~~~~i~V~NtGD-RPIQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV   82 (106)
T COG0832          12 DIELNAGRPTVTIEVANTGD-RPIQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV   82 (106)
T ss_pred             cEEEeCCCcceEEEEeecCC-CceEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence            4677777 467889999998 77654  55533322111111     1    12223455789999988876

>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B

Probab=83.65  E-value=2.2  Score=29.93  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=16.0

Q ss_pred             CCCcccccccCCCCEEEEEEc
Q psy88            43 GVPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus        43 G~~~~~~~~i~pG~~~~y~~~   63 (75)
                      |.......||.|||+++.++.
T Consensus       331 GL~v~d~~pI~PGETr~v~v~  351 (399)
T TIGR03079       331 GLEVDDQSAIAPGETVEVKME  351 (399)
T ss_pred             cceeCCCCCcCCCcceEEEEE
Confidence            433334668999999999987

Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.

>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []

Probab=82.51  E-value=2.2  Score=29.93  Aligned_cols=15  Identities=27%  Similarity=0.432  Sum_probs=10.0

Q ss_pred             ccccCCCCEEEEEEc
Q psy88            49 QCPITQGNTFRYQFT   63 (75)
Q Consensus        49 ~~~i~pG~~~~y~~~   63 (75)
                      ..||+|||+++.+..
T Consensus       318 ~~pI~PGETrtl~V~  332 (381)
T PF04744_consen  318 NSPIAPGETRTLTVE  332 (381)
T ss_dssp             -S-B-TT-EEEEEEE
T ss_pred             CCCcCCCceEEEEEE
Confidence            558999999999987

These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.

>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins

Probab=82.44  E-value=6.1  Score=21.56  Aligned_cols=46  Identities=13%  Similarity=0.132  Sum_probs=30.6

Q ss_pred             CCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc
Q psy88            10 GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus        10 Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~   63 (75)
                      ...|.|+|.|... .+..+......+     ..+.+  .+..|.||++.+..|.
T Consensus        19 ~g~l~l~l~N~g~-~~~~~~v~~~~y-----~~~~~--~~~~v~ag~~~~~~w~   64 (89)
T PF05506_consen   19 TGNLRLTLSNPGS-AAVTFTVYDNAY-----GGGGP--WTYTVAAGQTVSLTWP   64 (89)
T ss_pred             CCEEEEEEEeCCC-CcEEEEEEeCCc-----CCCCC--EEEEECCCCEEEEEEe
Confidence            3589999999977 666665443211     12222  2345899999999997

; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process

>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family

Probab=80.89  E-value=9  Score=22.45  Aligned_cols=57  Identities=16%  Similarity=0.436  Sum_probs=32.1

Q ss_pred             EEecCCEEEEEEEeCCC--CCCceEEeCC----cccc-CCCCCCCCCcccccccCCCCEEEEEEc
Q psy88             6 NVCEGDRVVVDVRNSMD--GLENTIHWHG----IHQR-GTQYSDGVPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         6 ~~~~Gd~v~i~~~N~~~--~~~~~iH~HG----~~~~-~~~~~DG~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .+++|..+.+.+.=..+  ......-.||    +..+ ..+..||=.. ..||+.+|+.++|.+.
T Consensus        23 ~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~   86 (120)
T cd00918          23 VIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYT   86 (120)
T ss_pred             EEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEe
Confidence            56788888777652111  1223333344    2222 1123455322 3799999999999885

They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=80.25  E-value=4.2  Score=21.56  Aligned_cols=20  Identities=25%  Similarity=0.429  Sum_probs=13.6

Q ss_pred             ccCCCCEEEEEEc-C-----CCeeeE
Q psy88            51 PITQGNTFRYQFT-A-----NAGTHF   70 (75)
Q Consensus        51 ~i~pG~~~~y~~~-~-----~~Gt~~   70 (75)
                      .|+||++.+..|. .     .+|+|.
T Consensus        45 ~l~pG~s~~~~~~V~vp~~a~~G~y~   70 (78)
T PF10633_consen   45 SLPPGESVTVTFTVTVPADAAPGTYT   70 (78)
T ss_dssp             -B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred             cCCCCCEEEEEEEEECCCCCCCceEE
Confidence            5899999999988 2     367764

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
1zpu_A	534	Crystal Structure Of Fet3p, A Multicopper Oxidase T		5e-14
3g5w_A	318	Crystal Structure Of Blue Copper Oxidase From Nitro		1e-12
1aoz_A	552	Refined Crystal Structure Of Ascorbate Oxidase At 1		2e-12
3sqr_A	580	Crystal Structure Of Laccase From Botrytis Aclada A		3e-11
3kw7_A	502	Crystal Structure Of Lacb From Trametes Sp. Ah28-2		3e-11
3v9e_A	580	Structure Of The L513m Mutant Of The Laccase From B		3e-11
3t6v_A	495	Crystal Structure Of Laccase From Steccherinum Ochr		1e-10
1hfu_A	503	Type-2 Cu-Depleted Laccase From Coprinus Cinereus A		2e-10
1a65_A	504	Type-2 Cu-depleted Laccase From Coprinus Cinereus L		2e-10
2hzh_A	499	Crystal Structure Of Laccase From Coriolus Zonatus		2e-10
2qt6_A	498	Crystal Structure Determination Of A Blue Laccase F		4e-10
1kya_A	499	Active Laccase From Trametes Versicolor Complexed W		6e-10
4a2f_A	497	Coriolopsis Gallica Laccase Collected At 12.65 Kev		9e-10
4a2d_A	496	Coriolopsis Gallica Laccase T2 Copper Depleted At P		9e-10
2hrg_A	496	Crystal Structure Of Blue Laccase From Trametes Tro		9e-10
1gyc_A	499	Crystal Structure Determination At Room Temperature		1e-09
2xyb_A	497	Crystal Structure Of A Fully Functional Laccase Fro		1e-09
3div_A	499	Crystal Structure Of Laccase From Cerrena Maxima At		2e-09
2h5u_A	499	Crystal Structure Of Laccase From Cerrena Maxima At		2e-09
3fpx_A	499	Native Fungus Laccase From Trametes Hirsuta Length		2e-09
3pxl_A	499	Type-2 Cu-Depleted Fungus Laccase From Trametes Hir		2e-09
1v10_A	521	Structure Of Rigidoporus Lignosus Laccase From Hemi		7e-08
3dkh_A	559	L559a Mutant Of Melanocarpus Albomyces Laccase Leng		7e-07
1gw0_A	559	Crystal Structure Of Laccase From Melanocarpus Albo		7e-07
3pps_A	604	Crystal Structure Of An Ascomycete Fungal Laccase F		7e-07
2q9o_A	559	Near-Atomic Resolution Structure Of A Melanocarpus		5e-06
3zx1_A	481	Multicopper Oxidase From Campylobacter Jejuni: A Me		4e-04
3gdc_A	288	Crystal Structure Of Multicopper Oxidase Length = 2		4e-04

>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That Functions In Iron Import Length = 534

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-- 64
           V +GDRV + + N M+    ++H+HG+ Q GT   DGVPF+TQCPI  G+T  Y FT   
Sbjct: 38  VNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDY 97
Query: 65  NAGTHFWHAHT 75
           N GT+++H+HT
Sbjct: 98  NVGTYWYHSHT 108

>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas Europaea Length = 318

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
           V EGD V V+V N M  L +TIHWHG+ QRGT  SDGVP  TQ  I  G+TF Y+F A  
Sbjct: 38  VMEGDDVTVNVTN-MTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEP 96
Query: 66  AGTHFWHAH 74
           AGT ++H H
Sbjct: 97  AGTMWYHCH 105

>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9 Angstroms Resolution Length = 552

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-NAGT 68
           GD VVV++ N +      IHWHGI QRGT ++DG   ++QC I  G TF Y FT  N GT
Sbjct: 41  GDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGT 100
Query: 69  HFWHAH 74
            F+H H
Sbjct: 101 FFYHGH 106

>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67 A Resolution Length = 580

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA-GT 68
           GD +++ V N+++    +IHWHGI Q G+   DGVP VTQCPI  G+T  Y+F     GT
Sbjct: 105 GDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGT 164
Query: 69  HFWHAH 74
            ++H+H
Sbjct: 165 TWYHSH 170

>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2 Length = 502

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 9/65 (13%)
Query: 19  NSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA--NAGTH 69
           N +D L N       TIHWHG+ Q GT ++DG  FV QCPI  GN+F Y FT    AGT 
Sbjct: 47  NVIDNLTNATMLKTTTIHWHGLFQHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTF 106
Query: 70  FWHAH 74
           ++H+H
Sbjct: 107 WYHSH 111

>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada Length = 580

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA-GT 68
           GD +++ V N+++    +IHWHGI Q G+   DGVP VTQCPI  G+T  Y+F     GT
Sbjct: 105 GDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGT 164
Query: 69  HFWHAH 74
            ++H+H
Sbjct: 165 TWYHSH 170

>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum Length = 495

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 24  LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN--AGTHFWHAH 74
           ++ +IHWHG  Q+GT ++DG  F+TQCPI  GN+F Y F     AGT+++H+H
Sbjct: 60  VDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSH 112

>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68 A Resolution Length = 503

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 13  VVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHF 70
           VV D+ N       +IHWHG+ QRGT ++DG   V QCPI+ G+ F Y+FT   +AGT +
Sbjct: 48  VVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFW 107
Query: 71  WHAH 74
           +H+H
Sbjct: 108 YHSH 111

>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus Length = 504

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 13  VVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHF 70
           VV D+ N       +IHWHG+ QRGT ++DG   V QCPI+ G+ F Y+FT   +AGT +
Sbjct: 48  VVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFW 107
Query: 71  WHAH 74
           +H+H
Sbjct: 108 YHSH 111

>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6 A Resolution Length = 499

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 9   EGDRVVVDVRNSMDGL----ENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA 64
           +GD+  ++V N++         ++HWHG  Q+GT ++DG  FV QCPI  G++F Y F+ 
Sbjct: 40  KGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWADGPAFVNQCPIAAGSSFLYDFST 99
Query: 65  --NAGTHFWHAH 74
              AGT ++H+H
Sbjct: 100 PIQAGTFWYHSH 111

>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From Lentinus Tigrinus Length = 498

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 10  GDRVVVDVRNSMDG---LENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF--T 63
           GD   +++ N M     L+ T IHWHG  Q+GT ++DG  F+ QCPI  GN+F Y F   
Sbjct: 41  GDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPAFINQCPIASGNSFLYDFQVP 100
Query: 64  ANAGTHFWHAH 74
             AGT ++H+H
Sbjct: 101 GQAGTFWYHSH 111

>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With 2,5-Xylidine Length = 499

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
Query: 10  GDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
           GDR  ++V   +D L N       +IHWHG  Q+GT ++DG  F+ QCPI+ G++F Y F
Sbjct: 41  GDRFQLNV---IDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDF 97
Query: 63  TA--NAGTHFWHAH 74
                AGT ++H+H
Sbjct: 98  QVPDQAGTFWYHSH 111

>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev Length = 497

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 9   EGDRVVVDVRNSMDG---LENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA 64
           +GDR  ++V ++M     L++T IHWHG  Q GT ++DG  FV QCPI+ G+ F Y F  
Sbjct: 40  KGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQV 99
Query: 65  --NAGTHFWHAH 74
              AGT ++H+H
Sbjct: 100 PDQAGTFWYHSH 111

>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5 Length = 496

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 9   EGDRVVVDVRNSMDG---LENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA 64
           +GDR  ++V ++M     L++T IHWHG  Q GT ++DG  FV QCPI+ G+ F Y F  
Sbjct: 40  KGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQV 99
Query: 65  --NAGTHFWHAH 74
              AGT ++H+H
Sbjct: 100 PDQAGTFWYHSH 111

>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii Complexed With P-Methylbenzoate Length = 496

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 9   EGDRVVVDVRNSMDG---LENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA 64
           +GDR  ++V ++M     L++T IHWHG  Q GT ++DG  FV QCPI+ G+ F Y F  
Sbjct: 40  KGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQV 99
Query: 65  --NAGTHFWHAH 74
              AGT ++H+H
Sbjct: 100 PDQAGTFWYHSH 111

>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A Laccase From Trametes Versicolor In Its Oxidised Form Containing A Full Complement Of Copper Ions Length = 499

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 9   EGDRV---VVDVRNSMDGLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF-- 62
           +GDR    VVD   +   L++T IHWHG  Q GT ++DG  FV QCPI  G++F Y F  
Sbjct: 40  KGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDFHV 99
Query: 63  TANAGTHFWHAH 74
              AGT ++H+H
Sbjct: 100 PDQAGTFWYHSH 111

>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The Ligninolytic Fungus Pycnoporus Cinnabarinus Length = 497

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 12/75 (16%)
Query: 9   EGDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
           +GDR  ++V   +D L N       +IHWHG  Q+GT ++DG  FV QCPI  G++F Y 
Sbjct: 40  KGDRFQLNV---IDQLTNHTMLKTSSIHWHGFFQQGTNWADGPAFVNQCPIASGHSFLYD 96
Query: 62  FTA--NAGTHFWHAH 74
           F     AGT ++H+H
Sbjct: 97  FQVPDQAGTFWYHSH 111

>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a Resolution Length = 499

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
Query: 10  GDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
           GDR  ++V   +D L N       ++HWHG  Q+GT ++DG  F+ QCPI+ G++F Y F
Sbjct: 41  GDRFQLNV---IDNLTNHTMLKTTSVHWHGFFQQGTNWADGPAFINQCPISPGHSFLYDF 97
Query: 63  TA--NAGTHFWHAH 74
                AGT ++H+H
Sbjct: 98  QVPNQAGTFWYHSH 111

>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a Resolution Length = 499

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 12/74 (16%)
Query: 10  GDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
           GDR  ++V   +D L N       ++HWHG  Q+GT ++DG  F+ QCPI+ G++F Y F
Sbjct: 41  GDRFQLNV---IDNLTNHTMLKTTSVHWHGFFQQGTNWADGPAFINQCPISPGHSFLYDF 97
Query: 63  TA--NAGTHFWHAH 74
                AGT ++H+H
Sbjct: 98  QVPNQAGTFWYHSH 111

>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta Length = 499

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 12/74 (16%)
Query: 10  GDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
           GDR  ++V   +D L N       +IHWHG  Q GT ++DG  F+ QCPI+ G++F Y F
Sbjct: 41  GDRFQLNV---IDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF 97
Query: 63  TA--NAGTHFWHAH 74
                AGT ++H+H
Sbjct: 98  QVPDQAGTFWYHSH 111

>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta Length = 499

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 12/74 (16%)
Query: 10  GDRVVVDVRNSMDGLEN-------TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
           GDR  ++V   +D L N       +IHWHG  Q GT ++DG  F+ QCPI+ G++F Y F
Sbjct: 41  GDRFQLNV---IDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF 97
Query: 63  TA--NAGTHFWHAH 74
                AGT ++H+H
Sbjct: 98  QVPDQAGTFWYHSH 111

>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From Hemihedrally Twinned Crystals Length = 521

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 27  TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH 74
           +IHWHG  Q GT   DG  FV QCPI    +F Y F     AGT+++H+H
Sbjct: 83  SIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSH 132

>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase Length = 559

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPI-TQGNTFRYQFTANA-G 67
           GD V V V N++     +IHWHGIHQ+ T   DG   VT+CPI  +G    Y++ A   G
Sbjct: 74  GDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYG 133
Query: 68  THFWHAH 74
           T ++H+H
Sbjct: 134 TSWYHSH 140

>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces In Four Copper Form Length = 559

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPI-TQGNTFRYQFTANA-G 67
           GD V V V N++     +IHWHGIHQ+ T   DG   VT+CPI  +G    Y++ A   G
Sbjct: 74  GDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYG 133
Query: 68  THFWHAH 74
           T ++H+H
Sbjct: 134 TSWYHSH 140

>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From Thielavia Arenaria Length = 604

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPI-TQGNTFRYQFTANA-G 67
           GD + V V N++     ++HWHG+ Q G  ++DG   VT+CPI  +G    Y+F A   G
Sbjct: 115 GDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTECPIPPKGGRKTYKFRATQYG 174
Query: 68  THFWHAH 74
           T ++H+H
Sbjct: 175 TSWYHSH 181

>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus Albomyces Laccase Length = 559

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPI-TQGNTFRYQFTANA-G 67
           GD V V V N++     +IHWHGI Q+ T   DG   VT+CPI  +G    Y++ A   G
Sbjct: 74  GDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYG 133
Query: 68  THFWHAH 74
           T ++H+H
Sbjct: 134 TSWYHSH 140

>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A Metallo-Oxidase Length = 481

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 4   PK-NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
           PK  V EGD++ + V+N +     TIHWHG+     Q  DG P     PI  G    Y+F
Sbjct: 82  PKIEVFEGDKLEILVKNKLKE-ATTIHWHGVPVPPDQ--DGSP---HDPILAGEERIYRF 135
Query: 63  TA---NAGTHFWHAH 74
                +AGT+++H H
Sbjct: 136 EIPQDSAGTYWYHPH 150

>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase Length = 288

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANA-G 67
           EGD + +   N+     +TIH+HG+H R T   DG P +    I  G +F Y+F A   G
Sbjct: 72  EGDALRIHFTNA-GAHPHTIHFHGVH-RATM--DGTPGIGAGSIAPGQSFTYEFDATPFG 127
Query: 68  THFWHAH 74
           TH +H H
Sbjct: 128 THLYHCH 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
1aoz_A	552	Ascorbate oxidase; oxidoreductase(oxygen acceptor)	5e-34
1zpu_A	534	Iron transport multicopper oxidase FET3; ferroxida	3e-32
3g5w_A	318	Multicopper oxidase type 1; two domain, laccase, n	2e-31
3t6v_A	495	Laccase; beta barrel, oxidoreductase; HET: CBS; 2.	6e-31
3pxl_A	499	Laccase; 4-copper protein, metal-binding, oxidored	7e-31
1v10_A	521	Laccase; multicopper blue oxidase, oxidase; 1.7A {	2e-30
3sqr_A	580	Laccase; multicopper oxidase, glycosylation, oxido	3e-30
2zwn_A	339	Two-domain type laccase; muticopper oxidase, oxido	4e-30
2q9o_A	559	Laccase-1; multicopper oxidase, 2-OXOH oxidoreduct	5e-30
1hfu_A	503	Laccase 1; oxidoreductase, blue multi-copper oxida	8e-30
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	6e-18
2xu9_A	439	Laccase; oxidoreductase, multicopper oxidases; 1.5	4e-16
3aw5_A	448	Multicopper oxidase; beta barrel, oxidoreductase;	5e-16
3od3_A	488	Blue copper oxidase CUEO; multicopper oxidase, Cu(	1e-15
3zx1_A	481	Oxidoreductase, putative; laccase, metallo-oxidase	3e-15
3abg_A	534	Bilirubin oxidase; cleavage on PAIR of basic resid	1e-14
3cg8_A	343	Laccase; oxidoreductase, multicopper blue protein;	2e-12
3kw8_A	276	Laccase, putative copper oxidase; two-domain lacca	3e-12
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	4e-12
2r7e_A	742	Coagulation factor VIII; ceruloplasmin fold, cuppe	5e-12
2r7e_A	742	Coagulation factor VIII; ceruloplasmin fold, cuppe	8e-10
2uxt_A	451	Protein SUFI, SUFI; oxidoreductase, periplasmic, c	5e-11
1kbv_A	327	ANIA, major outer membrane protein PAN 1; ANIA[NO2	7e-11
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	1e-10
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	4e-04
2bw4_A	340	Copper-containing nitrite reductase; oxidoreductas	6e-10
1sdd_A	306	Coagulation factor V; copper-binding protein, cofa	8e-10
1oe1_A	336	Dissimilatory copper-containing nitrite reductase;	1e-09
2j5w_A	1065	Ceruloplasmin, ferroxidase; oxidoreductase, plasma	2e-09
2j5w_A	1065	Ceruloplasmin, ferroxidase; oxidoreductase, plasma	1e-07
2j5w_A	1065	Ceruloplasmin, ferroxidase; oxidoreductase, plasma	2e-05
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	9e-09
2wsd_A	513	Spore coat protein A; oxidoreductase, multi-copper	2e-08
2g23_A	612	PHS, phenoxazinone synthase; copper, metalloprotei	3e-08
1sdd_B	647	Coagulation factor V; copper-binding protein, cofa	4e-05

>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A* Length = 552

 Score =  120 bits (302), Expect = 5e-34
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 6   NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
               GD VVV++ N +      IHWHGI QRGT ++DG   ++QC I  G TF Y FT +
Sbjct: 37  RANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVD 96

Query: 66  -AGTHFWHAHT 75
             GT F+H H 
Sbjct: 97  NPGTFFYHGHL 107

>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae} Length = 534

 Score =  115 bits (289), Expect = 3e-32
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 6   NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
            V +GDRV + + N M+    ++H+HG+ Q GT   DGVPF+TQCPI  G+T  Y FT +
Sbjct: 37  TVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVD 96

Query: 66  --AGTHFWHAHT 75
              GT+++H+HT
Sbjct: 97  YNVGTYWYHSHT 108

>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea} Length = 318

 Score =  110 bits (276), Expect = 2e-31
 Identities = 36/71 (50%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 7   VCEGDRVVVDVRNSMDGLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
           V EGD V V+V N         IHWHG+ QRGT  SDGVP  TQ  I  G+TF Y+F A 
Sbjct: 38  VMEGDDVTVNVTNMTT--LPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAE 95

Query: 66  -AGTHFWHAHT 75
            AGT ++H H 
Sbjct: 96  PAGTMWYHCHV 106

>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A* Length = 495

 Score =  111 bits (279), Expect = 6e-31
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 7   VCEGDRVVVDVRNSMDGLEN----TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
              GD   +   N +         +IHWHG  Q+GT ++DG  F+TQCPI  GN+F Y F
Sbjct: 39  GNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNF 98

Query: 63  TA--NAGTHFWHAHT 75
                AGT+++H+H 
Sbjct: 99  NVPGMAGTYWYHSHL 113

>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A* Length = 499

 Score =  110 bits (278), Expect = 7e-31
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 6/75 (8%)

Query: 7   VCEGDRVVVDVRNSMD---GLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
              GDR  ++V +++     L++T IHWHG  Q GT ++DG  F+ QCPI+ G++F Y F
Sbjct: 38  GNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDF 97

Query: 63  TAN--AGTHFWHAHT 75
                AGT ++H+H 
Sbjct: 98  QVPDQAGTFWYHSHL 112

>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 Length = 521

 Score =  109 bits (275), Expect = 2e-30
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 7   VCEGDRVVVDVRNSMD---GLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQF 62
               DR  ++V + +        T IHWHG  Q GT   DG  FV QCPI    +F Y F
Sbjct: 59  GNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDF 118

Query: 63  TAN--AGTHFWHAHT 75
                AGT+++H+H 
Sbjct: 119 VVPGQAGTYWYHSHL 133

>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada} Length = 580

 Score =  109 bits (275), Expect = 3e-30
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
              GD +++ V N+++    +IHWHGI Q G+   DGVP VTQCPI  G+T  Y+F    
Sbjct: 102 ADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQ 161

Query: 66  AGTHFWHAHT 75
            GT ++H+H 
Sbjct: 162 YGTTWYHSHF 171

>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes} Length = 339

 Score =  107 bits (268), Expect = 4e-30
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 7   VCEGDRVVVDVRNSMDGLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
           V EGD V+V+V N+        IHWHG+HQ+GT  SDGVP VTQ PI  G+++ Y+F A+
Sbjct: 39  VQEGDDVIVNVTNNTS--LPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKAD 96

Query: 66  -AGTHFWHAHT 75
             GT ++H H 
Sbjct: 97  RIGTLWYHCHV 107

>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A* Length = 559

 Score =  108 bits (273), Expect = 5e-30
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPIT-QGNTFRYQFTAN 65
              GD V V V N++     +IHWHGI Q+ T   DG   VT+CPI  +G    Y++ A 
Sbjct: 71  ANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRAR 130

Query: 66  -AGTHFWHAHT 75
             GT ++H+H 
Sbjct: 131 QYGTSWYHSHF 141

>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A* Length = 503

 Score =  108 bits (271), Expect = 8e-30
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 6/76 (7%)

Query: 6   NVCEGDRVVVDVRNSMD---GLENT-IHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
              + D   ++V N +D    L  T IHWHG+ QRGT ++DG   V QCPI+ G+ F Y+
Sbjct: 37  RGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYK 96

Query: 62  FTA--NAGTHFWHAHT 75
           FT   +AGT ++H+H 
Sbjct: 97  FTPAGHAGTFWYHSHF 112

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP} Length = 288

 Score = 74.1 bits (182), Expect = 6e-18
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN-AG 67
           EGD + +   N+     +TIH+HG+H+      DG P +    I  G +F Y+F A   G
Sbjct: 72  EGDALRIHFTNAGA-HPHTIHFHGVHRATM---DGTPGIGAGSIAPGQSFTYEFDATPFG 127

Query: 68  THFWHAHT 75
           TH +H H 
Sbjct: 128 THLYHCHQ 135

>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A Length = 439

 Score = 69.9 bits (171), Expect = 4e-16
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
           V   D V + + N +      +HWHG+        D         I  G ++ Y+FT   
Sbjct: 51  VRPRDTVRLTLENRLP-EPTNLHWHGLPISPK--VDDP----FLEIPPGESWTYEFTVPK 103

Query: 66  --AGTHFWHAHT 75
             AGT ++H H 
Sbjct: 104 ELAGTFWYHPHL 115

>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum} Length = 448

 Score = 69.6 bits (170), Expect = 5e-16
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
           +  G RV + ++N +      +HWHG        +D  P      IT G ++ Y F    
Sbjct: 42  LRRGQRVDMTLKNKLT-EPTIVHWHGFDVNWH--NDAHP---SFAITPGESYNYSFDVVN 95

Query: 66  -AGTHFWHAHT 75
            AGT+ +H H 
Sbjct: 96  RAGTYLYHPHP 106

>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ... Length = 488

 Score = 68.4 bits (167), Expect = 1e-15
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
           +  G  V VD+ N +   E T+HWHG+   G    DG P   Q  I  G         + 
Sbjct: 52  LQRGKAVTVDIYNQLT-EETTLHWHGLEVPGE--VDGGP---QGIIPPGGKRSVTLNVDQ 105

Query: 66  -AGTHFWHAHT 75
            A T ++H H 
Sbjct: 106 PAATCWFHPHQ 116

>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp} Length = 481

 Score = 67.3 bits (164), Expect = 3e-15
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 9/72 (12%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
           V EGD++ + V+N +     TIHWHG+        DG P     PI  G    Y+F    
Sbjct: 86  VFEGDKLEILVKNKLK-EATTIHWHGVPVPPD--QDGSP---HDPILAGEERIYRFEIPQ 139

Query: 66  --AGTHFWHAHT 75
             AGT+++H H 
Sbjct: 140 DSAGTYWYHPHP 151

>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A* Length = 534

 Score = 65.8 bits (160), Expect = 1e-14
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 10  GDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN--AG 67
           G   VV   N+ +   N++H HG   R     DG     +     G+   Y +     A 
Sbjct: 76  GVETVVRFINNAE-APNSVHLHGSFSRAA--FDGWA---EDITEPGSFKDYYYPNRQSAR 129

Query: 68  THFWHAHT 75
           T ++H H 
Sbjct: 130 TLWYHDHA 137

>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor} Length = 343

 Score = 59.3 bits (143), Expect = 2e-12
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 18/83 (21%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
           V EGD + ++  N+MD +  ++H HG+    +  SDG   + +  +  G T  Y +  + 
Sbjct: 81  VNEGDTLHIEFTNTMD-VRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYTWRTHK 136

Query: 66  -------------AGTHFWHAHT 75
                        AG   +H H 
Sbjct: 137 PGRRDDGTWRPGSAGYWHYHDHV 159

>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} Length = 276

 Score = 58.5 bits (141), Expect = 3e-12
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 18/83 (21%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-- 64
           V EGD + ++  N+MD +  ++H HG+    +  SDG   + +  +  G T  Y +    
Sbjct: 40  VNEGDTLHIEFTNTMD-VRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYTWRTHK 95

Query: 65  ------------NAGTHFWHAHT 75
                       +AG   +H H 
Sbjct: 96  PGRRDDGTWRPGSAGYWHYHDHV 118

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis} Length = 442

 Score = 58.4 bits (141), Expect = 4e-12
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 9/71 (12%)

Query: 7   VCEGDRVVVDVRNSMDGLEN-TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
           V EGD +  ++ N         I  H +                     G+T  + F A 
Sbjct: 64  VREGDEIEFNLSNHPSSKMPHNIDLHAVT-------GPGGGAESSFTAPGHTSTFNFKAL 116

Query: 66  -AGTHFWHAHT 75
             G + +H  T
Sbjct: 117 NPGLYIYHCAT 127

>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* Length = 742

 Score = 58.1 bits (139), Expect = 5e-12
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 16/82 (19%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQR----GTQYSDGVPFVTQCPITQGNTFRYQFTA 64
            GD +++  +N        I+ HGI         +   GV  +   PI  G  F+Y++T 
Sbjct: 458 VGDTLLIIFKNQAS-RPYNIYPHGITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTV 516

Query: 65  -----------NAGTHFWHAHT 75
                         T ++ +  
Sbjct: 517 TVEDGPTKSDPRCLTRYYSSFV 538

>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A* Length = 742

 Score = 51.9 bits (123), Expect = 8e-10
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 18/84 (21%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQR----GTQYSDGVPFVTQC--PITQGNTFRYQF 62
             D VV+ ++N       ++H  G+       G +Y D      +    +  G +  Y +
Sbjct: 81  VYDTVVITLKNMAS-HPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFPGGSHTYVW 139

Query: 63  TA-----------NAGTHFWHAHT 75
                           T+ + +H 
Sbjct: 140 QVLKENGPMASDPLCLTYSYLSHV 163

>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A Length = 451

 Score = 55.4 bits (133), Expect = 5e-11
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
           V +GD V +   N +     ++   G+   G     G P      ++    +        
Sbjct: 54  VWKGDDVKLIYSNRLTE-NVSMTVAGLQVPGPL--MGGP---ARMMSPNADWAPVLPIRQ 107

Query: 66  -AGTHFWHAHT 75
            A T ++HA+T
Sbjct: 108 NAATLWYHANT 118

>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A Length = 327

 Score = 54.9 bits (132), Expect = 7e-11
 Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 7/70 (10%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
           V EGD V V+  N+      +   H +                     G T  + F A  
Sbjct: 74  VREGDTVEVEFSNNPS----STVPHNVDFHAAT--GQGGGAAATFTAPGRTSTFSFKALQ 127

Query: 66  AGTHFWHAHT 75
            G + +H   
Sbjct: 128 PGLYIYHCAV 137

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Length = 447

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 7   VCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
           V  GD V + ++N  D  + +++ +HG          G    TQ     G      F A 
Sbjct: 199 VRVGDTVELHLKNHKDSLMVHSVDFHGATG-----PGGAAAFTQ--TDPGEETVVTFKAL 251

Query: 66  -AGTHFWHAHT 75
             G + +H  T
Sbjct: 252 IPGIYVYHCAT 262

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Length = 447

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 13/69 (18%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
           V EG+ V V++ N           H +        D     +     +  +  + F A  
Sbjct: 59  VHEGETVQVNLVN------GEGAQHDVV------VDQYAARSAIVNGKNASSTFSFVASK 106

Query: 66  AGTHFWHAH 74
            G   ++  
Sbjct: 107 VGEFNYYCS 115

>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ... Length = 340

 Score = 52.2 bits (125), Expect = 6e-10
 Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 7/70 (10%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
           V E D V + + N     +     H I          +       +  G     +F A  
Sbjct: 75  VHENDYVELRLINP----DTNTLLHNIDFHAAT--GALGGGALTQVNPGEETTLRFKATK 128

Query: 66  AGTHFWHAHT 75
            G   +H   
Sbjct: 129 PGVFVYHCAP 138

>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 Length = 306

 Score = 52.1 bits (124), Expect = 8e-10
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 18/84 (21%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQR----GTQYSDGVP--FVTQCPITQGNTFRYQF 62
            GD + V  +N       +IH  GI       G  YSD           +  G  + Y++
Sbjct: 66  VGDIMKVHFKNKAH-KPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEW 124

Query: 63  TA-----------NAGTHFWHAHT 75
                           TH ++++ 
Sbjct: 125 IISEHSGPTHDDPPCLTHIYYSYV 148

>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ... Length = 336

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 7/70 (10%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
           V EGD V + + N           H +   G      +       +  G     +F A  
Sbjct: 69  VHEGDYVQLTLVNPAT----NAMPHNVDFHGAT--GALGGAKLTNVNPGEQATLRFKADR 122

Query: 66  AGTHFWHAHT 75
           +GT  +H   
Sbjct: 123 SGTFVYHCAP 132

>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A* Length = 1065

 Score = 50.7 bits (120), Expect = 2e-09
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 22/86 (25%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF--------VTQCPITQGNTFRY 60
            GD+V V ++N       T H HGI        +G  +             +  G  + Y
Sbjct: 101 TGDKVYVHLKNLAS-RPYTFHSHGITYYKE--HEGAIYPDNTTDFQRADDKVYPGEQYTY 157

Query: 61  QFTA-----------NAGTHFWHAHT 75
              A           N  T  +H+H 
Sbjct: 158 MLLATEEQSPGEGDGNCVTRIYHSHI 183

>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A* Length = 1065

 Score = 45.7 bits (107), Expect = 1e-07
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 21/78 (26%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA---- 64
            GD+V +  +N       +IH HG+              T  P   G T  Y +      
Sbjct: 816 VGDKVKIIFKNMAT-RPYSIHAHGVQ---------TESSTVTPTLPGETLTYVWKIPERS 865

Query: 65  -------NAGTHFWHAHT 75
                        +++  
Sbjct: 866 GAGTEDSACIPWAYYSTV 883

>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A* Length = 1065

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 10/88 (11%), Positives = 20/88 (22%), Gaps = 22/88 (25%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIH----------QRGTQYSDGVPFVTQCPITQGNTF 58
            GD + V   N       +I   G+                        +   +    TF
Sbjct: 457 VGDTIRVTFHNKGA-YPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTETF 515

Query: 59  RYQFTA-----------NAGTHFWHAHT 75
            Y++T                  +++  
Sbjct: 516 TYEWTVPKEVGPTNADPVCLAKMYYSAV 543

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A Length = 333

 Score = 48.7 bits (116), Expect = 9e-09
 Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 7/70 (10%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
           V EGD V + + N  +        H I          +       I  G     +F A  
Sbjct: 68  VHEGDYVELTLINPPE----NTMPHNIDFHAAT--GALGGGGLTLINPGEKVVLRFKATR 121

Query: 66  AGTHFWHAHT 75
           AG   +H   
Sbjct: 122 AGAFVYHCAP 131

>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A Length = 513

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 30/97 (30%)

Query: 7   VCEGDRVVVDVRNSMDG---------------------LENTIHWHGIHQRGTQYSDGVP 45
           V   + V V   N++                       ++  +H HG        SDG P
Sbjct: 62  VKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPDD--SDGYP 119

Query: 46  --FVTQCPITQGNTFR---YQFTAN--AGTHFWHAHT 75
             + ++     G  F+   Y +         ++H H 
Sbjct: 120 EAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHA 156

>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 Length = 647

 Score = 38.6 bits (89), Expect = 4e-05
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 18/83 (21%)

Query: 9   EGDRVVVDVRNSMDGLENTIHWHGIH----QRGTQYSDGVP--FVTQCPITQGNTFRYQF 62
             D + V  +N       ++H HG+       G  Y D  P  F     I    T+ Y +
Sbjct: 75  VDDVIQVRFKNLAS-RPYSLHAHGLSYEKSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVW 133

Query: 63  TA-----------NAGTHFWHAH 74
            A                 +++ 
Sbjct: 134 HATTRSGPENPGSACRAWAYYSA 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
3sqr_A	580	Laccase; multicopper oxidase, glycosylation, oxido	99.96
3t6v_A	495	Laccase; beta barrel, oxidoreductase; HET: CBS; 2.	99.96
3pxl_A	499	Laccase; 4-copper protein, metal-binding, oxidored	99.96
1aoz_A	552	Ascorbate oxidase; oxidoreductase(oxygen acceptor)	99.96
1zpu_A	534	Iron transport multicopper oxidase FET3; ferroxida	99.96
1v10_A	521	Laccase; multicopper blue oxidase, oxidase; 1.7A {	99.96
2q9o_A	559	Laccase-1; multicopper oxidase, 2-OXOH oxidoreduct	99.95
1hfu_A	503	Laccase 1; oxidoreductase, blue multi-copper oxida	99.95
3g5w_A	318	Multicopper oxidase type 1; two domain, laccase, n	99.95
3t9w_A	299	Small laccase, multi-copper oxidase; two-domain co	99.95
2zwn_A	339	Two-domain type laccase; muticopper oxidase, oxido	99.94
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	99.94
3tas_A	313	Small laccase, multi-copper oxidase; two-domain la	99.94
3kw8_A	276	Laccase, putative copper oxidase; two-domain lacca	99.94
3zx1_A	481	Oxidoreductase, putative; laccase, metallo-oxidase	99.94
2uxt_A	451	Protein SUFI, SUFI; oxidoreductase, periplasmic, c	99.94
3aw5_A	448	Multicopper oxidase; beta barrel, oxidoreductase;	99.93
3abg_A	534	Bilirubin oxidase; cleavage on PAIR of basic resid	99.92
3od3_A	488	Blue copper oxidase CUEO; multicopper oxidase, Cu(	99.92
2j5w_A	1065	Ceruloplasmin, ferroxidase; oxidoreductase, plasma	99.92
1sdd_A	306	Coagulation factor V; copper-binding protein, cofa	99.92
2wsd_A	513	Spore coat protein A; oxidoreductase, multi-copper	99.92
2xu9_A	439	Laccase; oxidoreductase, multicopper oxidases; 1.5	99.91
2r7e_A	742	Coagulation factor VIII; ceruloplasmin fold, cuppe	99.91
3gyr_A	612	PHS, phenoxazinone synthase; metalloprotein, lacca	99.91
2r7e_B	770	Coagulation factor VIII; ceruloplasmin fold, cuppe	99.9
3cg8_A	343	Laccase; oxidoreductase, multicopper blue protein;	99.9
1sdd_B	647	Coagulation factor V; copper-binding protein, cofa	99.9
2g23_A	612	PHS, phenoxazinone synthase; copper, metalloprotei	99.88
2r7e_A	742	Coagulation factor VIII; ceruloplasmin fold, cuppe	99.88
1kbv_A	327	ANIA, major outer membrane protein PAN 1; ANIA[NO2	99.84
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	99.84
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	99.84
1oe1_A	336	Dissimilatory copper-containing nitrite reductase;	99.82
2bw4_A	340	Copper-containing nitrite reductase; oxidoreductas	99.82
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	99.73
3cvb_A	105	Plastocyanin; cupredoxin, SELF assembly, copper, e	99.69
3kw8_A	276	Laccase, putative copper oxidase; two-domain lacca	99.67
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	99.63
2j5w_A	1065	Ceruloplasmin, ferroxidase; oxidoreductase, plasma	99.61
3cg8_A	343	Laccase; oxidoreductase, multicopper blue protein;	99.53
1iby_A	112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	99.45
3t9w_A	299	Small laccase, multi-copper oxidase; two-domain co	99.44
3tas_A	313	Small laccase, multi-copper oxidase; two-domain la	99.4
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	99.4
2aan_A	139	Auracyanin A; cupredoxin fold, electron transport;	99.39
3g5w_A	318	Multicopper oxidase type 1; two domain, laccase, n	99.37
3zx1_A	481	Oxidoreductase, putative; laccase, metallo-oxidase	99.37
2g23_A	612	PHS, phenoxazinone synthase; copper, metalloprotei	99.35
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	99.32
2xu9_A	439	Laccase; oxidoreductase, multicopper oxidases; 1.5	99.31
1hfu_A	503	Laccase 1; oxidoreductase, blue multi-copper oxida	99.31
2gim_A	106	Plastocyanin; beta sheet, Cu, helix, electron tran	99.3
1v10_A	521	Laccase; multicopper blue oxidase, oxidase; 1.7A {	99.3
1zpu_A	534	Iron transport multicopper oxidase FET3; ferroxida	99.28
1sdd_B	647	Coagulation factor V; copper-binding protein, cofa	99.28
2cal_A	154	Rusticyanin; iron respiratory electron transport c	99.26
2zwn_A	339	Two-domain type laccase; muticopper oxidase, oxido	99.24
1aoz_A	552	Ascorbate oxidase; oxidoreductase(oxygen acceptor)	99.23
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.22
3abg_A	534	Bilirubin oxidase; cleavage on PAIR of basic resid	99.22
3t6v_A	495	Laccase; beta barrel, oxidoreductase; HET: CBS; 2.	99.22
3gyr_A	612	PHS, phenoxazinone synthase; metalloprotein, lacca	99.2
1sdd_A	306	Coagulation factor V; copper-binding protein, cofa	99.18
2plt_A	98	Plastocyanin; electron transport; 1.50A {Chlamydom	99.18
3pxl_A	499	Laccase; 4-copper protein, metal-binding, oxidored	99.16
4hci_A	100	Cupredoxin 1; structural genomics, niaid, national	99.15
1kbv_A	327	ANIA, major outer membrane protein PAN 1; ANIA[NO2	99.15
2wsd_A	513	Spore coat protein A; oxidoreductase, multi-copper	99.13
3od3_A	488	Blue copper oxidase CUEO; multicopper oxidase, Cu(	99.08
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	99.07
1qhq_A	140	Protein (auracyanin); electron transfer, cupredoxi	99.06
1pcs_A	98	Plastocyanin; electron transport; 2.15A {Synechocy	99.04
2q9o_A	559	Laccase-1; multicopper oxidase, 2-OXOH oxidoreduct	99.02
2r7e_B	770	Coagulation factor VIII; ceruloplasmin fold, cuppe	99.02
1byp_A	99	Protein (plastocyanin); electron transfer, photosy	99.01
1b3i_A	97	PETE protein, protein (plastocyanin); electron tra	98.98
1plc_A	99	Plastocyanin; electron transport; 1.33A {Populus n	98.97
3sqr_A	580	Laccase; multicopper oxidase, glycosylation, oxido	98.96
3erx_A	123	Pseudoazurin; copper protein, high-resolution, E t	98.96
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	98.92
1kdj_A	102	Plastocyanin; electron transfer, photosystem, PAI-	98.91
3tu6_A	127	Pseudoazurin (blue copper protein); cupredoxins, b	98.89
3ef4_A	124	Pseudoazurin, blue copper protein; electron transf	98.87
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	98.87
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	98.86
2bw4_A	340	Copper-containing nitrite reductase; oxidoreductas	98.86
2uxt_A	451	Protein SUFI, SUFI; oxidoreductase, periplasmic, c	98.82
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	98.77
3aw5_A	448	Multicopper oxidase; beta barrel, oxidoreductase;	98.75
1cuo_A	129	Protein (azurin ISO-2); beta barrel, periplasmic,	98.68
1paz_A	123	Pseudoazurin precursor; electron transfer(cupropro	98.68
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	98.67
1pmy_A	123	Pseudoazurin; electron transfer(cuproprotein); 1.5	98.65
2ux6_A	122	Pseudoazurin; type-1 copper, metal-binding, redox	98.63
3ay2_A	167	Lipid modified azurin protein; beta sandwich, bact	98.62
1oe1_A	336	Dissimilatory copper-containing nitrite reductase;	98.55
1nwp_A	128	Azurin; electron transport, cupredoxin, electron t	98.52
2ccw_A	129	Azurin II, AZN-2; electron transport (cuproprotein	98.5
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	98.44
2iaa_C	128	Azurin; quinoprotein, tryptophan tryptophylquinone	98.43
2cua_A	135	Protein (CUA); CUA center, electron transport; 1.6	98.01
3fsa_A	125	Azurin; copper, cupredoxin fold, metal-binding, pr	97.99
3s8f_B	168	Cytochrome C oxidase subunit 2; complex IV, respir	97.73
1cyx_A	205	CYOA; electron transport; 2.30A {Escherichia coli}	93.99
4ep8_B	101	Urease subunit beta; alpha-beta barrel, nickel met	93.0
2gsm_B	262	Cytochrome C oxidase subunit 2; transmembrane prot	92.22
4ac7_B	126	Urease subunit beta; hydrolase, bacillus pasteurii	91.94
4ubp_B	126	Protein (urease (chain B)); bacillus pasteurii, ni	91.94
3hb3_B	298	Cytochrome C oxidase subunit 2; electron transfer,	91.27
1v54_B	227	Cytochrome C oxidase polypeptide II; oxidoreductas	88.95
3isy_A	120	Bsupi, intracellular proteinase inhibitor; intrace	88.39
3rfr_A	419	PMOB; membrane, oxidoreductase; 2.68A {Methylocyst	88.0
3qga_A	225	UREA2, fusion of urease beta and gamma subunits; i	86.7
1yew_A	382	Particulate methane monooxygenase, B subunit; memb	85.82
1xwv_A	129	DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8	85.48
1nep_A	130	EPV20, BNPC2, epididymal secretory protein E1; nie	82.88
2wtp_A	131	ORF131 protein, CZCE; metal binding protein, heavy	82.51

>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}

Probab=99.96  E-value=1e-29  Score=178.88  Aligned_cols=75  Identities=40%  Similarity=0.699  Sum_probs=70.6

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|+++.++++|||||+.+...+++||+++++||||+||++|+|+|+ +++||||||||.
T Consensus        96 PGP~I~~~~GD~v~V~v~N~l~~~~tsIHwHGl~~~~t~~~DGvp~vTq~pI~PG~sftY~f~~~q~GT~WYHsH~  171 (580)
T 3sqr_A           96 PGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHF  171 (580)
T ss_dssp             SCCCEEEETTCEEEEEEEECCSSCCBCEEETTCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCCCEEEEEEECS
T ss_pred             CCceEEEeCCCEEEEEEEECCCCCcceEEecccccCCCccccCCCccccCCCCCCCeEEEEEECCCCcceEEeecc
Confidence            468999999999999999999746899999999998778999999999999999999999999 999999999995

>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*

Probab=99.96  E-value=1.5e-29  Score=175.29  Aligned_cols=75  Identities=39%  Similarity=0.698  Sum_probs=69.6

Q ss_pred             CcccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH   74 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H   74 (75)
                      ++++||+++||+|+|+|+|++++    .+++|||||+.+...+++||+++++||+|+||++|+|+|+  +++||||||||
T Consensus        33 PGP~I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vtq~pI~PG~sftY~f~~~~~~GT~wYHsH  112 (495)
T 3t6v_A           33 PGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSH  112 (495)
T ss_dssp             SCCEEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECTTCCEEEEEEEC
T ss_pred             cCCeEEEECCcEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccccCCCCCCCeEEEEEEeCCCCceeeeecc
Confidence            46899999999999999999983    3799999999998778999999999999999999999999  78999999999


Q ss_pred             C
Q psy88            75 T   75 (75)
Q Consensus        75 ~   75 (75)
                      .
T Consensus       113 ~  113 (495)
T 3t6v_A          113 L  113 (495)
T ss_dssp             S
T ss_pred             c
Confidence            5

>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*

Probab=99.96  E-value=1.7e-29  Score=175.18  Aligned_cols=75  Identities=37%  Similarity=0.749  Sum_probs=69.6

Q ss_pred             CcccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH   74 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H   74 (75)
                      ++++||+++||+|+|+|+|++++    .+++|||||+.+...+++||+++++||+|+||++|+|+|+  +++||||||||
T Consensus        32 PGP~I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vtq~pI~PG~s~tY~f~~~~~~GT~wYHsH  111 (499)
T 3pxl_A           32 PGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSH  111 (499)
T ss_dssp             SCCCEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEEEC
T ss_pred             cCCeEEEeCCCEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccccCCCCCCCeEEEEEEcCCCCceeeeecc
Confidence            46899999999999999999983    3799999999998778899999999999999999999999  78999999999


Q ss_pred             C
Q psy88            75 T   75 (75)
Q Consensus        75 ~   75 (75)
                      .
T Consensus       112 ~  112 (499)
T 3pxl_A          112 L  112 (499)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*

Probab=99.96  E-value=1.6e-29  Score=176.35  Aligned_cols=75  Identities=44%  Similarity=0.764  Sum_probs=70.7

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|+++.++++|||||+.+...+|+||+++++||+|+||++++|+|+ +++||||||||+
T Consensus        32 PGP~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq~~I~PG~s~tY~f~~~~~GT~wYHsH~  107 (552)
T 1aoz_A           32 PGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHL  107 (552)
T ss_dssp             SCCCEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEECS
T ss_pred             CCCcEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccccCCcCCCCeEEEEEECCCCEEEEEEECc
Confidence            368999999999999999999646999999999998888899999999999999999999999 999999999995

>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.7e-29  Score=174.36  Aligned_cols=75  Identities=45%  Similarity=0.817  Sum_probs=70.2

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-CCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-NAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|+++..+++|||||+.+...+++||+++++||+|+||++|+|+|+ . ++||||||||+
T Consensus        32 PGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~pI~PG~~~~Y~f~~~~~~GT~wYH~H~  108 (534)
T 1zpu_A           32 PWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHT  108 (534)
T ss_dssp             SCCCEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEECCS
T ss_pred             CCccEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCCcCCCCeEEEEEEeCccceeEEEEEcC
Confidence            468999999999999999999757999999999998777899999999999999999999999 5 99999999995

>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3

Probab=99.96  E-value=7.8e-29  Score=172.19  Aligned_cols=75  Identities=36%  Similarity=0.667  Sum_probs=69.9

Q ss_pred             CcccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH   74 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H   74 (75)
                      ++++||+++||+|+|+|+|+++.    .+++|||||+.+...+++||+++++||+|+||++++|+|+  +++||||||||
T Consensus        53 PGP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vtq~~I~PG~s~~Y~f~~~~~~GT~wYH~H  132 (521)
T 1v10_A           53 IAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSH  132 (521)
T ss_dssp             SCCCEEEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTEEEEEEEECTTCCEEEEEEEC
T ss_pred             CCCcEEEeCCCEEEEEEEECCCCccCCCCceEecCCeeccCCCccCCCcceeeCCcCCCCeEEEEEecCCCCccEEEEec
Confidence            36899999999999999999973    6999999999997777899999999999999999999999  78999999999


Q ss_pred             C
Q psy88            75 T   75 (75)
Q Consensus        75 ~   75 (75)
                      .
T Consensus       133 ~  133 (521)
T 1v10_A          133 L  133 (521)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*

Probab=99.95  E-value=7.5e-29  Score=173.47  Aligned_cols=75  Identities=37%  Similarity=0.580  Sum_probs=70.0

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCC-CCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQ-GNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~p-G~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|+++.++++|||||+.+...+++||+++++||+|+| |++++|+|+ +++||||||||.
T Consensus        65 PGP~i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~~tq~~I~P~G~~~~Y~f~~~q~GT~wYH~H~  141 (559)
T 2q9o_A           65 MGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHF  141 (559)
T ss_dssp             SCCCEEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTTEEEEEEEECCSCEEEEEEECS
T ss_pred             cCCcEEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCCCccccCccCCCCCeEEEEEECCCCEEEEEEEcc
Confidence            468999999999999999999437999999999998777899999999999999 999999999 999999999995

>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*

Probab=99.95  E-value=1.3e-28  Score=170.50  Aligned_cols=74  Identities=41%  Similarity=0.752  Sum_probs=69.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      +++||+++||+|+|+|+|+++.    ++++|||||+.+...+++||+++++||+|+||++++|+|+  +++||||||||.
T Consensus        33 GP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~GT~wYH~H~  112 (503)
T 1hfu_A           33 GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHF  112 (503)
T ss_dssp             SCEEEEETTCCEEEEEEECCCCTTSCCSBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEECCTTCCEEEEEEECS
T ss_pred             CCcEEEeCCCEEEEEEEeCCCCccCCCcccEeccceeccCCCccCCCcccccCCcCCCCeEEEEEEeCCCCccEEEEecc
Confidence            4799999999999999999972    6899999999997777899999999999999999999999  789999999995

>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}

Probab=99.95  E-value=3.5e-28  Score=160.81  Aligned_cols=74  Identities=50%  Similarity=0.785  Sum_probs=69.6

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|.++ .+++|||||+.+....++||++.+++|+|+||++++|+|+ +++||||||||.
T Consensus        32 pGP~i~~~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~~~~~DG~p~~t~~~i~PG~~~~y~f~~~~~Gt~wYH~H~  106 (318)
T 3g5w_A           32 PAPLIHVMEGDDVTVNVTNMTT-LPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHV  106 (318)
T ss_dssp             SCCEEEEETTCEEEEEEEECSS-SCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCS
T ss_pred             CCceEEEeCCCEEEEEEEeCCC-CceeEEecCcCCCCCcccCCCcccccccCCCCCEEEEEEEcCCCEEEEEEccC
Confidence            3679999999999999999998 8999999999988766799999999999999999999999 999999999995

>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}

Probab=99.95  E-value=1.7e-27  Score=156.48  Aligned_cols=71  Identities=28%  Similarity=0.408  Sum_probs=64.4

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-------------CC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-------------NA   66 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-------------~~   66 (75)
                      ++++||+++||+|+|+|+|+++ ++++|||||+.+..  ++||++ .+|++|+||++++|+|+ .             ++
T Consensus        56 PGP~i~~~~GD~v~v~~~N~l~-~~~siH~HG~~~~~--~~DG~~-~~~~~i~PG~t~~Y~~~~~~~~~~~~~~~~~~~~  131 (299)
T 3t9w_A           56 PGPVLEMWEGDTLEIDLVNTTD-RVLSLHPHGVDYDV--NSDGTL-MNGSAVMPGQTRRYTWRSHVGYRRADGSWAEGTA  131 (299)
T ss_dssp             SCCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCCG--GGSCCT-TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCCC
T ss_pred             cCceEEEECCeEEEEEEEECCC-CCccEEeCCcccCC--ccCCCc-cccCccCCCCeEEEEEEeecccccCCCcCCCCCc
Confidence            4689999999999999999999 89999999998764  589987 67999999999999998 4             57


Q ss_pred             eeeEEccCC
Q psy88            67 GTHFWHAHT   75 (75)
Q Consensus        67 Gt~~YH~H~   75 (75)
                      ||||||||+
T Consensus       132 gt~~YH~H~  140 (299)
T 3t9w_A          132 GYWHYHDHA  140 (299)
T ss_dssp             EEEEEECSS
T ss_pred             eeEEEecCC
Confidence            999999994

>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}

Probab=99.94  E-value=1.5e-27  Score=158.61  Aligned_cols=74  Identities=49%  Similarity=0.813  Sum_probs=69.8

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++|++++||+|+|+|+|.++ .+++|||||+.+...+++||++.++||+|+||++++|.|+ +++||||||||.
T Consensus        33 pGP~I~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGvp~vtq~~I~PG~~~~y~f~~~~~Gt~wyH~H~  107 (339)
T 2zwn_A           33 PGPLIHVQEGDDVIVNVTNNTS-LPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKADRIGTLWYHCHV  107 (339)
T ss_dssp             SCCEEEEETTCEEEEEEEEESS-SCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCS
T ss_pred             CCCeEEEECCCEEEEEEEECCC-CCccEEeCCCCcCCCcccCCCCccccCccCCCCeEEEEEECCCCEEEEEEecC
Confidence            3679999999999999999998 8999999999998777789999999999999999999999 999999999994

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}

Probab=99.94  E-value=4e-27  Score=153.79  Aligned_cols=70  Identities=33%  Similarity=0.570  Sum_probs=65.6

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +++||+++||+|+|+|+|.++ .+++|||||+..   .++||++.+++++|+||++++|+|+ +++||||||||.
T Consensus        65 gP~i~~~~Gd~v~v~~~N~~~-~~~~iH~HG~~~---~~~DG~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~  135 (288)
T 3gdc_A           65 GPTLWAREGDALRIHFTNAGA-HPHTIHFHGVHR---ATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQ  135 (288)
T ss_dssp             CCEEEEETTCEEEEEEEECSS-SCBCCEESSCCC---GGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECCC
T ss_pred             CCcEEEeCCCEEEEEEEeCCC-CcccEEeccccc---cccCCCCCccceeECCCCEEEEEEEcCCCccEEEEecC
Confidence            579999999999999999999 899999999973   3689999999999999999999999 999999999995

>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*

Probab=99.94  E-value=4.7e-27  Score=154.96  Aligned_cols=71  Identities=27%  Similarity=0.436  Sum_probs=63.9

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-------------CC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-------------NA   66 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-------------~~   66 (75)
                      ++++||+++||+|+|+|+|+++ ++++|||||+.+..  .+||++ .++++|+||++++|+|+ .             ++
T Consensus        40 PGP~i~~~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~--~~dG~~-~~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~  115 (313)
T 3tas_A           40 PGPLIELNEGDTLHIEFENTMD-VPVSLHVHGLDYEI--SSDGTK-QSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSA  115 (313)
T ss_dssp             SCCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCCG--GGSCST-TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCSC
T ss_pred             cCCeEEEECCCEEEEEEEECCC-CCccEeecCCcCCc--cCCCCc-cccCCcCCCCEEEEEEEeccCCccccccccCCCc
Confidence            4689999999999999999999 89999999998864  479988 47899999999999997 4             57


Q ss_pred             eeeEEccCC
Q psy88            67 GTHFWHAHT   75 (75)
Q Consensus        67 Gt~~YH~H~   75 (75)
                      ||||||||+
T Consensus       116 gt~~YH~h~  124 (313)
T 3tas_A          116 GYWHYHDHV  124 (313)
T ss_dssp             EEEEEECSS
T ss_pred             eEEEEeecC
Confidence            999999994

>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*

Probab=99.94  E-value=1.6e-26  Score=150.22  Aligned_cols=71  Identities=28%  Similarity=0.467  Sum_probs=65.0

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CC-------------C
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-AN-------------A   66 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~-------------~   66 (75)
                      ++++||+++||+|+|+|+|.++ .+++|||||+.+..  ++||++ ++||+|+||++++|+|+ .+             +
T Consensus        34 pGP~i~~~~Gd~v~v~~~N~~~-~~~siH~HG~~~~~--~~DG~~-~t~~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~  109 (276)
T 3kw8_A           34 PGPLIEVNEGDTLHIEFTNTMD-VRASLHVHGLDYEI--SSDGTA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSA  109 (276)
T ss_dssp             SCCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCCG--GGSCCT-TTTCSBCTTCEEEEEEECCCCEECTTSCEECCSC
T ss_pred             cCCeEEEECCCEEEEEEEECCC-CCccEeecCcccCC--ccCCCc-CCcCCCCCCCEEEEEEEcCCccccccCccCCCCC
Confidence            4689999999999999999998 89999999999875  489999 78999999999999999 53             7


Q ss_pred             eeeEEccCC
Q psy88            67 GTHFWHAHT   75 (75)
Q Consensus        67 Gt~~YH~H~   75 (75)
                      |+||||||+
T Consensus       110 gt~~YH~h~  118 (276)
T 3kw8_A          110 GYWHYHDHV  118 (276)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEecCc
Confidence            999999995

>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}

Probab=99.94  E-value=1e-26  Score=160.77  Aligned_cols=69  Identities=36%  Similarity=0.639  Sum_probs=62.9

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CC--CeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-AN--AGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~--~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|.++ ++++|||||+.++  +++||++   ||+|+||++++|+|+ .+  +||||||||.
T Consensus        80 PGPtIr~~~Gd~v~v~v~N~l~-~~tsiHwHGl~~~--~~~DG~p---q~~I~PG~s~~Y~f~~~~~~~GT~WYH~H~  151 (481)
T 3zx1_A           80 PAPKIEVFEGDKLEILVKNKLK-EATTIHWHGVPVP--PDQDGSP---HDPILAGEERIYRFEIPQDSAGTYWYHPHP  151 (481)
T ss_dssp             SCCBEEEETTCEEEEEEEECSS-SCBCCEEETCCCC--GGGSCCT---TSCBCTTCEEEEEEECCTTCCEEEEEECCC
T ss_pred             CCceEEEECCcEEEEEEEeCCC-CCeeEEecCcccC--CccCCCc---cCcCCCCCeEEEEEeCCCCCCceEEEeecC
Confidence            4689999999999999999999 8999999999885  4689986   899999999999999 54  8999999994

>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A

Probab=99.94  E-value=8.2e-27  Score=159.83  Aligned_cols=69  Identities=22%  Similarity=0.272  Sum_probs=63.6

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-CCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-NAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|+++ ++++|||||+.++..  +||++   ||+|+||++++|+|+ + ++||||||||+
T Consensus        48 pGP~i~~~~Gd~v~v~~~N~l~-~~tsiHwHG~~~~~~--~DG~~---~~~i~PG~~~~Y~f~~~~~~GT~wYH~H~  118 (451)
T 2uxt_A           48 LGPTIRVWKGDDVKLIYSNRLT-ENVSMTVAGLQVPGP--LMGGP---ARMMSPNADWAPVLPIRQNAATLWYHANT  118 (451)
T ss_dssp             BCCEEEEETTCEEEEEEEECSS-SCBCEEEETCCCCGG--GSCSG---GGCBCTTCEECCEEECCSCSEEEEEEECC
T ss_pred             cCceEEEeCCCEEEEEEEECCC-CCccEEECCccCCCC--CCCCC---cCcCCCCCeEEEEEEcCCCCcceEEecCC
Confidence            3689999999999999999999 899999999998764  79987   899999999999999 5 59999999995

>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}

Probab=99.93  E-value=2.3e-26  Score=157.63  Aligned_cols=67  Identities=30%  Similarity=0.571  Sum_probs=62.5

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-CCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-NAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-~~Gt~~YH~H   74 (75)
                      +++||+++||+|+|+|+|+++ ++++|||||+.++  +++||+++   |+|+||++++|+|+ . ++||||||||
T Consensus        37 GP~i~~~~Gd~v~v~~~N~l~-~~tsiHwHG~~~~--~~~DG~~~---~~i~PG~~~~Y~f~~~~~~GT~wYH~H  105 (448)
T 3aw5_A           37 NPTIILRRGQRVDMTLKNKLT-EPTIVHWHGFDVN--WHNDAHPS---FAITPGESYNYSFDVVNRAGTYLYHPH  105 (448)
T ss_dssp             SCEEEEETTCEEEEEEEECSS-SCBCEEEETCCCC--HHHHTCGG---GCBCTTCEEEEEEECCSCSEEEEEEEC
T ss_pred             CceEEEeCCCEEEEEEEECCC-CceeEEeCCccCC--CccCCCCC---ccCCCCCEEEEEEEcCCCCCceEeccC
Confidence            689999999999999999999 8999999999986  35899886   89999999999999 5 8999999999

>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*

Probab=99.92  E-value=2.2e-25  Score=155.54  Aligned_cols=69  Identities=26%  Similarity=0.321  Sum_probs=62.3

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|+++ .+++|||||+.++.  ++||++   +++|+||++++|+|+  +++||||||||.
T Consensus        67 PGPtI~~~~Gd~v~v~v~N~l~-~~tsiHwHGl~~~~--~~DG~~---~~~i~PG~~~~Y~f~~~~~~GT~WYH~H~  137 (534)
T 3abg_A           67 PGPTFQVPRGVETVVRFINNAE-APNSVHLHGSFSRA--AFDGWA---EDITEPGSFKDYYYPNRQSARTLWYHDHA  137 (534)
T ss_dssp             SEEEEEEETTCCEEEEEEECSS-SCBCEEEETCCCCT--TTTTCS---SSCBSSCSCCCEEECCCSSSCEEEEEECC
T ss_pred             cCceEEEeCCcEEEEEEEECCC-CCceEEECCCcCCC--CCCCCC---CCCCCCCCeEEEEEecCCcceeEEEecCc
Confidence            3679999999999999999999 89999999998764  489976   688999999999999  457999999995

>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...

Probab=99.92  E-value=2.1e-25  Score=154.49  Aligned_cols=68  Identities=32%  Similarity=0.520  Sum_probs=62.5

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C-CCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A-NAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~-~~Gt~~YH~H~   75 (75)
                      +++||+++||+|+|+|+|+++ .+++|||||+.++.  ++||++   +|+|+||++++|+|+ + ++||||||||.
T Consensus        47 GP~i~~~~Gd~v~v~~~N~l~-~~tsiHwHG~~~~~--~~DG~p---~~~i~PG~~~~Y~f~~~~~aGT~wYH~H~  116 (488)
T 3od3_A           47 GPAVKLQRGKAVTVDIYNQLT-EETTLHWHGLEVPG--EVDGGP---QGIIPPGGKRSVTLNVDQPAATCWFHPHQ  116 (488)
T ss_dssp             CCEEEEETTCEEEEEEEECSS-SCBCCEEETCCCCH--HHHCCT---TCCBCTTCEEEEEEECCSCSEEEEEECCC
T ss_pred             CCeEEEeCCeEEEEEEEeCCc-CceeEeecccccCc--ccCCCC---cCcCcCCCeEEEEEecCCCceeEEEEecC
Confidence            679999999999999999999 89999999999874  489987   789999999999999 5 47999999994

>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*

Probab=99.92  E-value=6.8e-25  Score=161.82  Aligned_cols=74  Identities=23%  Similarity=0.325  Sum_probs=65.6

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccC----CCCCCCCCc--ccccccCCCCEEEEEEc-CC--------
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRG----TQYSDGVPF--VTQCPITQGNTFRYQFT-AN--------   65 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~----~~~~DG~~~--~~~~~i~pG~~~~y~~~-~~--------   65 (75)
                      ++++||+++||+|+|+|+|.++ ++++|||||+.++.    .+|.||+++  ++||+|+||++++|+|+ .+        
T Consensus        93 PGP~Ir~~~GD~v~v~v~N~l~-~~tsiHwHGl~~~~~~DG~~~~dg~~g~~~t~~~I~PG~t~tY~f~~~~~~gp~~~d  171 (1065)
T 2j5w_A           93 LGPIIKAETGDKVYVHLKNLAS-RPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGD  171 (1065)
T ss_dssp             SCCCEEEETTCEEEEEEEEESS-SCBCCEESSSBCCGGGCCCCSCCCCCGGGTGGGCBCTTCEEEEEEECCSTTSCCTTS
T ss_pred             cCCeEEEeCCeEEEEEEEECCC-CCeeEEeCCccCCcccCCcccCCCCCcccccccccCCCCEEEEEEEeccccCCccCC
Confidence            3689999999999999999999 89999999998863    356777777  78999999999999999 44        


Q ss_pred             --CeeeEEccCC
Q psy88            66 --AGTHFWHAHT   75 (75)
Q Consensus        66 --~Gt~~YH~H~   75 (75)
                        +||||||||+
T Consensus       172 ~~aGT~wYHsH~  183 (1065)
T 2j5w_A          172 GNCVTRIYHSHI  183 (1065)
T ss_dssp             CSEEEEEEECCS
T ss_pred             CCceEEEEEecc
Confidence              4999999995

>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3

Probab=99.92  E-value=9e-25  Score=143.62  Aligned_cols=71  Identities=20%  Similarity=0.333  Sum_probs=60.9

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCccc--------ccccCCCCEEEEEEc-CC-------
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVT--------QCPITQGNTFRYQFT-AN-------   65 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~--------~~~i~pG~~~~y~~~-~~-------   65 (75)
                      +++||+++||+|+|+|+|.++ ++++|||||+.+..  .+||++...        +|+|+||++++|+|+ .+       
T Consensus        59 GP~I~v~~Gd~v~v~~~N~l~-~~~siH~HGl~~~~--~~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~~~~~gp~~~  135 (306)
T 1sdd_A           59 GPTLYAEVGDIMKVHFKNKAH-KPLSIHAQGIKYSK--FSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHD  135 (306)
T ss_dssp             CCCEEEETTCEEEEEEEECSS-SCBCCEEESSCCCT--TTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEECCGGGSCCSS
T ss_pred             CCEEEEeCCCEEEEEEEECCC-CcccEeecceeccc--ccCCCccCCCCcccccCCCccCCCCeEEEEEEeCCccCCCCC
Confidence            679999999999999999998 89999999999653  357766532        699999999999999 43       


Q ss_pred             ---CeeeEEccCC
Q psy88            66 ---AGTHFWHAHT   75 (75)
Q Consensus        66 ---~Gt~~YH~H~   75 (75)
                         +||||||||.
T Consensus       136 d~~~GT~wYHsH~  148 (306)
T 1sdd_A          136 DPPCLTHIYYSYV  148 (306)
T ss_dssp             SCSEEEEEEECCS
T ss_pred             CCCceEEEEeccC
Confidence               3799999994

>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A

Probab=99.92  E-value=4.6e-25  Score=153.00  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=63.4

Q ss_pred             CcccEEEecCCEEEEEEEeCCCC---------------------CCceEEeCCccccCCCCCCCCCc--ccccccCCC--
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDG---------------------LENTIHWHGIHQRGTQYSDGVPF--VTQCPITQG--   55 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~---------------------~~~~iH~HG~~~~~~~~~DG~~~--~~~~~i~pG--   55 (75)
                      ++++||+++||+|+|+|+|+++.                     .+++|||||+.++  +++||++.  +++++|+||  
T Consensus        56 PGPtI~~~~Gd~v~v~v~N~L~~~~~~~~~~t~~~~~~~~~~~~~~tsiHwHGl~~~--~~~DG~p~~~i~~g~i~pG~~  133 (513)
T 2wsd_A           56 PGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTP--DDSDGYPEAWFSKDFEQTGPY  133 (513)
T ss_dssp             SCCBEEEETTCCEEEEEEECCCSSCSSCCCTTSCC-----CCCSCCBCEEEETCCCC--GGGSCCTTSCBCGGGSSBCTT
T ss_pred             cCceEEECCCCEEEEEEEeCCCccccCccccccccccccccCCCCCcEEEcCCCcCC--CccCCCCcccccCCcccCCCc
Confidence            36899999999999999999972                     1899999999887  35899985  578999999  


Q ss_pred             -CEEEEEEc--CCCeeeEEccCC
Q psy88            56 -NTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus        56 -~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                       ++++|+|+  +++||||||||+
T Consensus       134 f~~~~Y~f~~~~~~GT~wYH~H~  156 (513)
T 2wsd_A          134 FKREVYHYPNQQRGAILWYHDHA  156 (513)
T ss_dssp             CCCSEEEECCCSCCEEEEEEECC
T ss_pred             cceEEEEEecCCCccceEECCCC
Confidence             55599999  579999999995

>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A

Probab=99.91  E-value=1e-24  Score=148.88  Aligned_cols=68  Identities=28%  Similarity=0.466  Sum_probs=61.1

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc---CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT---ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~---~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|+++ .+++|||||+.++.  ++||++ +   .|+||++++|+|+   +++||||||||.
T Consensus        45 pGP~i~~~~Gd~v~v~~~N~l~-~~tsiHwHG~~~~~--~~DG~~-~---~I~PG~~~~Y~f~~~~~~~GT~wYH~H~  115 (439)
T 2xu9_A           45 PGPTLRVRPRDTVRLTLENRLP-EPTNLHWHGLPISP--KVDDPF-L---EIPPGESWTYEFTVPKELAGTFWYHPHL  115 (439)
T ss_dssp             SCCEEEECTTCEEEEEEEECSS-SCBCCEEETCCCCT--TTSCTT-C---CBCTTCEEEEEEECCSSCCEEEEEECCC
T ss_pred             cCCEEEEeCCCEEEEEEEECCC-CCcceEeCCCCCCc--cccCCc-c---cCCCCCeEEEEEecCCCCCcceEeccCC
Confidence            3689999999999999999999 89999999998864  689976 3   4999999999998   379999999994

>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*

Probab=99.91  E-value=1.4e-25  Score=161.15  Aligned_cols=72  Identities=17%  Similarity=0.179  Sum_probs=63.2

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc--------ccccccCCCCEEEEEEc-C-------
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF--------VTQCPITQGNTFRYQFT-A-------   64 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~--------~~~~~i~pG~~~~y~~~-~-------   64 (75)
                      ++++||+++||+|+|+|+|+++ ++++|||||+.++.  ++||++.        ++||+|+||++++|+|+ .       
T Consensus        73 pGP~Ir~~~GD~v~V~v~N~l~-~~tsIHwHGl~~~~--~~DG~p~~Dg~~~~~vtq~~I~PG~s~tY~f~v~~~~gP~~  149 (742)
T 2r7e_A           73 LGPTIQAEVYDTVVITLKNMAS-HPVSLHAVGVSYWK--ASEGAEYDDQTSQREKEDDKVFPGGSHTYVWQVLKENGPMA  149 (742)
T ss_dssp             SEEEEEECSEEEEECCEECCSS-SCCCCCCSSSCCCS--SSSCCCSSCSCCSSSSSSSSCCTTCEECCEEEECGGGSCCS
T ss_pred             cCCeEEEECCCEEEEEEEECCC-CCEeEEecCcccCc--cccCCccCCCCcccccccCcCCCCCeEEEEEEeccccCCCc
Confidence            3579999999999999999999 89999999999764  3566654        77999999999999999 3       


Q ss_pred             ---CCeeeEEccCC
Q psy88            65 ---NAGTHFWHAHT   75 (75)
Q Consensus        65 ---~~Gt~~YH~H~   75 (75)
                         ++||||||||+
T Consensus       150 ~d~~~GT~wYHsH~  163 (742)
T 2r7e_A          150 SDPLCLTYSYLSHV  163 (742)
T ss_dssp             SSCSSCCEEECCCS
T ss_pred             CCCCcEEEEEccCC
Confidence               46999999995

>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}

Probab=99.91  E-value=1e-24  Score=152.31  Aligned_cols=69  Identities=20%  Similarity=0.282  Sum_probs=59.8

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCC-----------------------------------------ceEEeCCccccCCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLE-----------------------------------------NTIHWHGIHQRGTQ   39 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~-----------------------------------------~~iH~HG~~~~~~~   39 (75)
                      ++++||+++||+|+|+|+|+++ .+                                         ++|||||+.+.  +
T Consensus        63 PGPti~~~~Gd~v~v~~~N~L~-~~~~~h~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ttiHwHGl~~~--~  139 (612)
T 3gyr_A           63 PGPTIEVRRGQRVRIAWTNRIP-KGSEYPVTSVEVPLGPPGTPAPNTEPGRGGVEPNKDVAALPAWSVTHLHGAQTG--G  139 (612)
T ss_dssp             SCCEEEEETTCCEEEEEEECCC-TTCCCSEEEEEECCCSTTSCCGGGSCSCTTCCCCHHHHTCCCCBCEEEETCCCC--T
T ss_pred             cCcEEEEeCCcEEEEEEEECCC-CCcccccccccccCCCCCCccccccccccccccccccccCCCCceEEcCCCccC--C
Confidence            4689999999999999999986 43                                         67899998775  4


Q ss_pred             CCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88            40 YSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus        40 ~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++||++   ||+|+||++|+|+|+  +++||||||||.
T Consensus       140 ~~DGv~---q~~I~PG~~~~Y~f~~~q~~GT~WYHsH~  174 (612)
T 3gyr_A          140 GNDGWA---DNAVGFGDAQLSEYPNDHQATQWWYHDHA  174 (612)
T ss_dssp             TTSCCG---GGCBCTTCEEEEEECCCSCSEEEEEEECC
T ss_pred             cccCcc---cCccCCCCCEEEEEEcCCCCceEEEeeCC
Confidence            578876   899999999999999  568999999994

>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*

Probab=99.90  E-value=1.3e-24  Score=156.66  Aligned_cols=72  Identities=13%  Similarity=0.069  Sum_probs=65.5

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-C----------CCeee
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-A----------NAGTH   69 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~----------~~Gt~   69 (75)
                      ++++||+++||+|+|+|+|.++ ++++|||||+.++... .||++. ++++|+||++++|+|+ .          ++|||
T Consensus       197 pGP~Ir~~~GD~v~v~~~N~l~-~~~siH~HG~~~~~~~-~dG~~~-~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~  273 (770)
T 2r7e_B          197 LGPYIRAEVEDNIMVTFRNQAS-RPYSFYSSLISYEEDQ-RQGAEP-RKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAW  273 (770)
T ss_dssp             CCCCCCCCSSSCEEEEEECCSS-SCCCCCBTTCCCCCCS-SSCTTT-TSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEE
T ss_pred             CCCeEEEEcCCEEEEEEEECCC-CCcceeeccccccccc-CCCCcC-ccCccCCCCeEEEEEEecCccCCccCCCCCeeE
Confidence            3678999999999999999999 8999999999998764 269887 7999999999999999 5          89999


Q ss_pred             EEccCC
Q psy88            70 FWHAHT   75 (75)
Q Consensus        70 ~YH~H~   75 (75)
                      |||||+
T Consensus       274 wYHsh~  279 (770)
T 2r7e_B          274 AYSSDV  279 (770)
T ss_dssp             EECCCS
T ss_pred             EeeccC
Confidence            999995

>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}

Probab=99.90  E-value=9.5e-24  Score=140.80  Aligned_cols=70  Identities=29%  Similarity=0.498  Sum_probs=63.4

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CC-------------Ce
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-AN-------------AG   67 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~-------------~G   67 (75)
                      +++|++++||+|+|+|+|.++ .+++|||||+.+.  .++||++ +++|+|+||++++|.|+ .+             +|
T Consensus        76 GP~I~v~~Gd~v~v~~~N~l~-~~~sih~HG~~~~--~~~DG~~-~t~~~I~PG~~~~y~f~~~~pg~~~~g~~~~~~~G  151 (343)
T 3cg8_A           76 GPLIEVNEGDTLHIEFTNTMD-VRASLHVHGLDYE--ISSDGTA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAG  151 (343)
T ss_dssp             CCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCC--GGGSCCT-TTTCSBCTTCEEEEEEECCCCEECTTSCEECCSCE
T ss_pred             CCEEEEECCCEEEEEEEECCC-CCeeEEecCcccC--CcCCCcc-cccccccCCCEEEEEEEeCCCCcccccccCCCCce
Confidence            579999999999999999998 8999999999887  3689998 77999999999999998 54             48


Q ss_pred             eeEEccCC
Q psy88            68 THFWHAHT   75 (75)
Q Consensus        68 t~~YH~H~   75 (75)
                      +||||||+
T Consensus       152 t~~YH~h~  159 (343)
T 3cg8_A          152 YWHYHDHV  159 (343)
T ss_dssp             EEEEECSS
T ss_pred             EEEEecCc
Confidence            99999994

>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2

Probab=99.90  E-value=2.6e-24  Score=152.18  Aligned_cols=72  Identities=17%  Similarity=0.254  Sum_probs=54.8

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCccc--------ccccCCCCEEEEEEc-CC------
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVT--------QCPITQGNTFRYQFT-AN------   65 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~--------~~~i~pG~~~~y~~~-~~------   65 (75)
                      ++++||+++||+|+|+|+|.++ .+++|||||+.++.  ++||++.++        +|+|+||++++|+|+ .+      
T Consensus        67 pGP~I~~~~Gd~v~v~~~N~l~-~~~siH~HGl~~~~--~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~  143 (647)
T 1sdd_B           67 LGPVIRAEVDDVIQVRFKNLAS-RPYSLHAHGLSYEK--SSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPEN  143 (647)
T ss_dssp             SCCCEEEETTCEEEEEECCCSS-SCBCCEEETCC-----------------------CCBCTTCCEECCEECCTTTSCCS
T ss_pred             cCceEEEeCCCEEEEEEEECCC-CceEEecCcceeCC--CCCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCC
Confidence            3689999999999999999999 89999999999863  589999775        899999999999999 43      


Q ss_pred             Ce----eeEEccCC
Q psy88            66 AG----THFWHAHT   75 (75)
Q Consensus        66 ~G----t~~YH~H~   75 (75)
                      +|    |||||||+
T Consensus       144 ~G~~c~T~wYHsH~  157 (647)
T 1sdd_B          144 PGSACRAWAYYSAV  157 (647)
T ss_dssp             SSCSEEEEEEECCS
T ss_pred             CCCCceEEEEccCC
Confidence            57    99999995

>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*

Probab=99.88  E-value=1.8e-23  Score=150.21  Aligned_cols=73  Identities=22%  Similarity=0.323  Sum_probs=62.7

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCC-----CCCcccccccCCCCEEEEEEc--CCC-------
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSD-----GVPFVTQCPITQGNTFRYQFT--ANA-------   66 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~D-----G~~~~~~~~i~pG~~~~y~~~--~~~-------   66 (75)
                      ++++||+++||+|+|+|+|+++ ++++|||||+.+.. +++|     |++.+++|+|+||++++|+|+  +++       
T Consensus       450 pGP~Ir~~~GD~v~v~~~N~l~-~~~siHwHGl~~~~-~~~DG~~~~G~~~~~~~~I~PG~t~tY~f~~~~~agPg~~d~  527 (742)
T 2r7e_A          450 LGPLLYGEVGDTLLIIFKNQAS-RPYNIYPHGITDVR-PLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDP  527 (742)
T ss_dssp             CCCCCCCBTTCEEECCEECCSS-SCBCCEETTCSEEC-CTTCSCCSSSCSSTTTSCCBSSCEECCEEECCSTTSCCSSSC
T ss_pred             CCCeEEEECCCEEEEEEEeCCC-CCcCEEecccccCC-cccccccCCCCcccccccCCCCCeEEEEEEeccccCCcccCC
Confidence            3689999999999999999999 89999999998753 3455     566678999999999999999  444       


Q ss_pred             --eeeEEccCC
Q psy88            67 --GTHFWHAHT   75 (75)
Q Consensus        67 --Gt~~YH~H~   75 (75)
                        ||||||||+
T Consensus       528 ~~gT~wYHsH~  538 (742)
T 2r7e_A          528 RCLTRYYSSFV  538 (742)
T ss_dssp             SCCCCEEECCS
T ss_pred             CceEEEEecCc
Confidence              499999995

>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A

Probab=99.84  E-value=3.5e-21  Score=127.45  Aligned_cols=67  Identities=21%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +++|++++||+|+|+|+|.++. .+++|||||+..     .||.+..  ..|.||++++|.|+ +++||||||||.
T Consensus        69 gP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~-----~dG~~~~--~~i~PG~~~~y~f~~~~~Gt~wyH~h~  137 (327)
T 1kbv_A           69 GRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATG-----QGGGAAA--TFTAPGRTSTFSFKALQPGLYIYHCAV  137 (327)
T ss_dssp             CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGGTTT--TCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             CCeEEEeCCCEEEEEEEECCCCCCceeeEeCcccc-----CCCCCcc--eeecCCCEEEEEEECCCCeEEEEEeCC
Confidence            5799999999999999999862 489999999842     5887643  35999999999999 889999999994

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}

Probab=99.84  E-value=5.2e-21  Score=130.17  Aligned_cols=67  Identities=22%  Similarity=0.313  Sum_probs=58.1

Q ss_pred             cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +++|++++||+|+|+|.|.++. .+++|||||+..     .||.+..  .+|+||++++|+|+ +++||||||||.
T Consensus        59 gp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~-----~dG~~~~--~~i~pg~~~~y~f~~~~~Gt~~yH~H~  127 (442)
T 2zoo_A           59 GSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTG-----PGGGAES--SFTAPGHTSTFNFKALNPGLYIYHCAT  127 (442)
T ss_dssp             CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGGGGG--CCBCTTCEEEEEEECCSCEEEEEECCC
T ss_pred             CCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCcC-----CCCCCcc--EEECCCCEEEEEEEcCCCeEEEEecCC
Confidence            6799999999999999999752 599999999863     4777653  36999999999999 999999999973

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A

Probab=99.84  E-value=3.7e-21  Score=127.28  Aligned_cols=68  Identities=24%  Similarity=0.211  Sum_probs=56.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +++|++++||+|+|+|.|.    .+++||||+.+......||.+.++  .|+||++++|+|+ +++||||||||.
T Consensus        63 gP~i~~~~Gd~v~v~~~N~----~~~~h~Hg~~~~~~~~~~~~~~~~--~i~PG~~~~y~f~~~~~Gt~~yH~h~  131 (333)
T 1mzy_A           63 GPLMIVHEGDYVELTLINP----PENTMPHNIDFHAATGALGGGGLT--LINPGEKVVLRFKATRAGAFVYHCAP  131 (333)
T ss_dssp             CCEEEEETTCEEEEEEEEC----TTCCSCBCCEETTSCSGGGGGGGC--CBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             CCcEEecCCCEEEEEEEEC----CCCcccccceecCCCCCCCCCcee--EeCCCCEEEEEEECCCCEEEEEeecC
Confidence            5789999999999999998    358999999876543344445444  4999999999999 999999999995

>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...

Probab=99.82  E-value=1.6e-20  Score=124.29  Aligned_cols=67  Identities=22%  Similarity=0.338  Sum_probs=53.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +++|++++||+|+|+|+|.+.. .++.+|+||.     .+.||.+.++  .|+||++++|+|+ +++||||||||.
T Consensus        64 gP~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~-----~~~~~~~~~~--~i~pG~~~~y~f~~~~~Gt~~yH~h~  132 (336)
T 1oe1_A           64 GPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGA-----TGALGGAKLT--NVNPGEQATLRFKADRSGTFVYHCAP  132 (336)
T ss_dssp             CCCEEEETTCEEEEEEEECTTCCSCBCCEETTS-----CSGGGGGGGC--CBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             CCeEEEcCCCEEEEEEEcCCCCCccccceECCC-----CCCCCCcceE--EeCCCCEEEEEEECCCCeEEEEecCC
Confidence            5799999999999999999741 3566666664     2345555554  4999999999999 899999999994

>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...

Probab=99.82  E-value=1.5e-20  Score=124.47  Aligned_cols=68  Identities=19%  Similarity=0.192  Sum_probs=54.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +++|++++||+|+|+|.|.+    +++||||+.+......||....+  .|.||++++|+|+ +++||||||||.
T Consensus        70 gP~i~v~~Gd~v~v~~~N~~----~~~~~hg~~~~~~~~~~~~~~~~--~i~PG~~~~y~~~~~~~Gt~wyH~h~  138 (340)
T 2bw4_A           70 GPLMVVHENDYVELRLINPD----TNTLLHNIDFHAATGALGGGALT--QVNPGEETTLRFKATKPGVFVYHCAP  138 (340)
T ss_dssp             CCEEEEETTCEEEEEEEECT----TCCSCBCCEETTSCSGGGGGGGC--CBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             CCcEEEcCCCEEEEEEEeCC----CCCccCcceeCCcCCCCCCccce--EeCCCCEEEEEEECCCCeEEEEEcCC
Confidence            57899999999999999987    35777777655432233434343  4999999999999 889999999994

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=99.73  E-value=9.3e-18  Score=114.10  Aligned_cols=67  Identities=22%  Similarity=0.289  Sum_probs=57.5

Q ss_pred             cccEEEecCCEEEEEEEeCCC-CCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMD-GLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~-~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .++|++++||+++|+|.|.++ ...++|||||+..     .||.+...  .|.||++++|.|. +++|+||||||.
T Consensus       194 gp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~~~-----~DG~~~~~--~i~pG~~~~~~~~~~~~G~~~yh~h~  262 (447)
T 2dv6_A          194 GPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGATG-----PGGAAAFT--QTDPGEETVVTFKALIPGIYVYHCAT  262 (447)
T ss_dssp             CCCEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGGGGGC--CBCTTCEEEEEEECCSCEEEEEECCS
T ss_pred             CCeEEecCCCEEEEEEEeCCCCceeEEEeeccccC-----CCCCCccE--EeCCCCEEEEEEECCCCeEEEEEeCC
Confidence            468999999999999999975 2579999999742     58887543  4899999999999 889999999984

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A

Probab=99.69  E-value=1.8e-17  Score=93.47  Aligned_cols=69  Identities=20%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCC--CCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGT--QYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~--~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H   74 (75)
                      +.+|++++||+|+  |.|..+ .++++||||...+..  ...||.+ ..+..+.||++++|.|+  +++|+||||||
T Consensus        18 p~~i~v~~Gd~V~--~~N~~~-~~H~v~~~~~~~~~~~g~~~~~~~-~~~~~i~pG~~~~~~f~~~~~~G~y~y~C~   90 (105)
T 3cvb_A           18 PANVTVHPGDTVK--WVNNKL-PPHNILFDDKQVPGASKELADKLS-HSQLMFSPGESYEITFSSDFPAGTYTYYCA   90 (105)
T ss_dssp             SSEEEECTTEEEE--EEECSS-CCEEEEECTTSSGGGCHHHHHHHC-EEEEECSTTCEEEEEECTTSCSEEEEEECT
T ss_pred             CCEEEEcCCCEEE--EEECCC-CCCeEEEeCCCCCccccccccccc-ccccccCCCCeEEEEEecCCCCeeEEEEeC
Confidence            4689999999985  579987 799999999865421  0012211 23567999999999998  68999999998

>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*

Probab=99.67  E-value=3.7e-16  Score=101.37  Aligned_cols=71  Identities=21%  Similarity=0.332  Sum_probs=58.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCC--------CcccccccCCCCEEEEEEc-C---CCeee
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV--------PFVTQCPITQGNTFRYQFT-A---NAGTH   69 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~--------~~~~~~~i~pG~~~~y~~~-~---~~Gt~   69 (75)
                      ..+|++++||+|+|+|.|... ..+++|+||..+...  .+|.        ....+..|.||+++++.|. +   ++|+|
T Consensus       167 ~p~i~v~~G~~vri~l~N~~~-~~Hp~HlHG~~f~v~--~~G~~~~p~~~~~~~Dtv~v~pg~~~~~~~~~~~~~npG~w  243 (276)
T 3kw8_A          167 GPDFEATVGDRVEIVMITHGE-YYHTFHMHGHRWADN--RTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAW  243 (276)
T ss_dssp             CCCEEEETTCEEEEEEEEESS-CCEEEEETTCCEESS--SSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEE
T ss_pred             CCCEEEecCCEEEEEEecCCC-cceeEEEccceeEEe--ccCccCCCcccccCCccEEeCCCceEEEEEEeccCCCCCeE
Confidence            467999999999999999988 799999999876543  2442        1234567999999999999 5   69999


Q ss_pred             EEccCC
Q psy88            70 FWHAHT   75 (75)
Q Consensus        70 ~YH~H~   75 (75)
                      |||||.
T Consensus       244 ~~HCH~  249 (276)
T 3kw8_A          244 MYHCHV  249 (276)
T ss_dssp             EEEECS
T ss_pred             EEECCC
Confidence            999994

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=99.63  E-value=9.1e-16  Score=104.32  Aligned_cols=62  Identities=13%  Similarity=0.130  Sum_probs=54.3

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +++|++++||+|+|++.|.+. ..+++||||...           .++|+|.||++++|.|. .++|+||||||.
T Consensus        54 ~p~i~v~~Gd~v~~~~~N~~~-~~h~~~~~g~~~-----------~~~~~i~pG~~~~~~f~~~~~Gt~~y~~~~  116 (447)
T 2dv6_A           54 NPTLVVHEGETVQVNLVNGEG-AQHDVVVDQYAA-----------RSAIVNGKNASSTFSFVASKVGEFNYYCSI  116 (447)
T ss_dssp             SCCEEEETTCEEEEEEECSSS-SCBCCEETTTTE-----------ECCCBCSTTBEEEEEEECCSCEEEEEECCS
T ss_pred             CCeEEEcCCCEEEEEEEcCCC-CceEEEEccCCc-----------ccceecCCCCeEEEEEEcCCCEEEEEEeCC
Confidence            468999999999999999998 679999998632           24688999999999999 889999999983

>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*

Probab=99.61  E-value=2.8e-16  Score=116.24  Aligned_cols=69  Identities=23%  Similarity=0.192  Sum_probs=62.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccC-CCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRG-TQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~-~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++.|++++||+|+|+|.|..    +.+||||+.+.. ..+.||.+.++ |+|.||.+++|.|. +++||||||||+
T Consensus       631 ~P~l~~~~gd~v~~~v~~~g----~~~~~Hgl~~~g~t~~~dG~~~~t-~~i~pg~~~t~~~~~~~~Gt~~~h~h~  701 (1065)
T 2j5w_A          631 QPGLTMCKGDSVVWYLFSAG----NEADVHGIYFSGNTYLWRGERRDT-ANLFPQTSLTLHMWPDTEGTFNVECLT  701 (1065)
T ss_dssp             CCCCEEETTCCEEEEEECCC----STTCCEEEEETTCCEEETTEEESE-EEECTTCEEEEEECCCSCEEEEEEECS
T ss_pred             CCceEEeCCCEEEEEEEcCC----CcceEEeeEEeCCceeecCeecce-EeecCCceEEEEEecCCCeEEEEecCC
Confidence            36899999999999999764    359999998877 77899998887 99999999999999 999999999995

>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}

Probab=99.53  E-value=4.8e-14  Score=93.95  Aligned_cols=70  Identities=21%  Similarity=0.349  Sum_probs=57.1

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC--------cccccccCCCCEEEEEEc----CCCeeeE
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP--------FVTQCPITQGNTFRYQFT----ANAGTHF   70 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~--------~~~~~~i~pG~~~~y~~~----~~~Gt~~   70 (75)
                      .+|++++||+|+|+|.|... ..++||+||..+...  .+|..        ...+..|.||+++++.|.    +++|+|+
T Consensus       209 ~~l~v~~Ge~vri~l~N~g~-~~HpfHlHGh~f~v~--~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~pG~w~  285 (343)
T 3cg8_A          209 PDFEATVGDRVEIVMITHGE-YYHTFHMHGHRWADN--RTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWM  285 (343)
T ss_dssp             CCEEEETTCEEEEEEEEESS-CCEEEEETTCCEESS--SSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEE
T ss_pred             ccEEeCCCCEEEEEEEcCCc-cccccEecCcEEEEe--ccCcccCCCCcccceeeEEeCCCCEEEEEEEECCCCCCeeEE
Confidence            57999999999999999988 899999999876543  23321        123566999999999999    4799999


Q ss_pred             EccCC
Q psy88            71 WHAHT   75 (75)
Q Consensus        71 YH~H~   75 (75)
                      ||||.
T Consensus       286 ~HCHi  290 (343)
T 3cg8_A          286 YHCHV  290 (343)
T ss_dssp             EEECS
T ss_pred             EeCCC
Confidence            99994

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A

Probab=99.45  E-value=5e-13  Score=76.30  Aligned_cols=59  Identities=31%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++.++|... .     +||+..+.    .|.    +..+.||+++++.|. +++|+|+||||
T Consensus        37 p~~i~v~~G~~V~~~~~n~d~-~-----~H~~~i~~----~~~----~~~i~pG~~~~~~f~~~~~G~y~~~C~   96 (112)
T 1iby_A           37 PETLVVKKGDAVKVVVENKSP-I-----SEGFSIDA----FGV----QEVIKAGETKTISFTADKAGAFTIWCQ   96 (112)
T ss_dssp             SCEEEEETTCEEEEEEEECSS-S-----CEEEEEGG----GTE----EEEECTTCEEEEEEECCSCEEEEEBCS
T ss_pred             CCEEEEeCCCEEEEEEEECCC-C-----eEEEEEcC----CCc----eeEeCCCCEEEEEEECCCCEEEEEECC
Confidence            467999999999999999976 4     46655432    222    345899999999999 99999999997

>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}

Probab=99.44  E-value=7.5e-13  Score=86.77  Aligned_cols=72  Identities=19%  Similarity=0.252  Sum_probs=56.1

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCC-------CcccccccCCCCEEEEEEc----CCCeeeE
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV-------PFVTQCPITQGNTFRYQFT----ANAGTHF   70 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~-------~~~~~~~i~pG~~~~y~~~----~~~Gt~~   70 (75)
                      ..+|+++.||+++++|.|..+ ..+++|+||..+.... .++.       +......|.||+++++.+.    +.+|+|+
T Consensus       189 ~p~l~v~~Ge~Vr~~liN~~~-~~HpfHlHGh~F~v~~-~g~~~~~~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG~w~  266 (299)
T 3t9w_A          189 APTFEANLGERVEWIAIGHGS-NFHTFHLHGHRWLDNR-TGMRTSEYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWM  266 (299)
T ss_dssp             CCEEEEETTCEEEEEEEEESS-CCCEEEETTCCEESSS-SSSCCSTTCCCCEESEEECCTTCEEEEEEETTTTTCSEEEE
T ss_pred             cccceecCCCEEEEEEEeccc-cceeeeEecceEEEEe-cccccCCcCCCCceeeEEeCCceeEEEEEEEeeCCCCeeEE
Confidence            367899999999999999988 7899999997764321 2221       1123455899999999886    5799999


Q ss_pred             EccCC
Q psy88            71 WHAHT   75 (75)
Q Consensus        71 YH~H~   75 (75)
                      ||||.
T Consensus       267 ~HCHi  271 (299)
T 3t9w_A          267 YHCHV  271 (299)
T ss_dssp             EEECS
T ss_pred             EEcCC
Confidence            99995

>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*

Probab=99.40  E-value=1.6e-12  Score=85.62  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=57.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-------ccccccCCCCEEEEEEc----CCCeeeE
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-------VTQCPITQGNTFRYQFT----ANAGTHF   70 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-------~~~~~i~pG~~~~y~~~----~~~Gt~~   70 (75)
                      ...|+++.||++++++.|..+ ..+++|+||..+... ..||...       .....|.||+++++.+.    +.+|+|+
T Consensus       173 ~~~l~v~~Ge~vr~~liN~g~-~~hpfHlHGh~F~v~-~~~~~~~~~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG~w~  250 (313)
T 3tas_A          173 GPDFEATVGDRVEFVMITHGE-YYHTFHLHGHRWADN-RTGMLTGPDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWM  250 (313)
T ss_dssp             CCCEEEETTCEEEEEEEEESS-CCEEEEETTCCEESS-TTSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEE
T ss_pred             ccccccccCCEEEEEEecccc-cceeeeecCCeeEEE-EECCccCCCCCCeeeeEEEeCCCcceEEEEEeccCCCCEeEE
Confidence            357899999999999999987 899999999876543 2344221       23455899999999987    4699999


Q ss_pred             EccCC
Q psy88            71 WHAHT   75 (75)
Q Consensus        71 YH~H~   75 (75)
                      ||||.
T Consensus       251 ~HCHi  255 (313)
T 3tas_A          251 YHCHV  255 (313)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            99995

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=99.40  E-value=1.6e-12  Score=73.74  Aligned_cols=62  Identities=19%  Similarity=0.220  Sum_probs=47.8

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|..+ .+|++++++.       .||........+.||++++|.| +++|+|+|||+
T Consensus        32 P~~i~v~~Gd~V~~--~N~d~-~~H~v~~~~~-------~~g~~~~~~~~~~pG~~~~~tf-~~~G~y~y~C~   93 (105)
T 2ov0_A           32 TPELHVKVGDTVTW--INREA-MPHNVHFVAG-------VLGEAALKGPMMKKEQAYSLTF-TEAGTYDYHCT   93 (105)
T ss_dssp             SSEEEECTTCEEEE--EECSS-SCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE-CSCEEEEEECS
T ss_pred             CCEEEECCCCEEEE--EECCC-CCEEEEEcCC-------CCCcccccccccCCCCEEEEEe-CCCEEEEEEeC
Confidence            56899999999765  59877 7899988752       2454434344589999988877 78899999996

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}

Probab=99.39  E-value=2.5e-12  Score=75.95  Aligned_cols=73  Identities=14%  Similarity=0.092  Sum_probs=52.3

Q ss_pred             cccEEEecCCEEEEEEEeCCCCC-CceEEeCCccc-----------------cCCCCCCCCCcccccccCCCCEEEEEEc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGL-ENTIHWHGIHQ-----------------RGTQYSDGVPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~-~~~iH~HG~~~-----------------~~~~~~DG~~~~~~~~i~pG~~~~y~~~   63 (75)
                      +..|++++||+|+|+|+|... . +|.++.++...                 ...+..+.........|.||+++++.|.
T Consensus        34 p~~i~v~~G~~V~~~~~N~~~-~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~t~~l~pGet~~v~f~  112 (139)
T 2aan_A           34 KTELTVSAGQTVTIRFKNNSA-VQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVTFT  112 (139)
T ss_dssp             CSEEEECTTCEEEEEEECCCS-SCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEEEE
T ss_pred             CCeEEECCCCEEEEEEEeCCC-CCCeeEEEeccccccchhhhhhhhcccccccccCcccccccccccccCCCCEEEEEEE
Confidence            467999999999999999876 6 88888887431                 0000001000011234899999999999


Q ss_pred             -CCCeeeEEccCC
Q psy88            64 -ANAGTHFWHAHT   75 (75)
Q Consensus        64 -~~~Gt~~YH~H~   75 (75)
                       +++|+|+|||+.
T Consensus       113 ~~~pG~y~f~C~~  125 (139)
T 2aan_A          113 APAAGTYLYICTV  125 (139)
T ss_dssp             CCSSEEEEEECCS
T ss_pred             CCCCeEEEEEcCC
Confidence             999999999983

>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}

Probab=99.37  E-value=9.6e-13  Score=86.88  Aligned_cols=71  Identities=25%  Similarity=0.401  Sum_probs=59.8

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-----ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-----VTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-----~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .+|+++.|++++++|.|... ..+.+|+||..+... ..||.+.     .....|.||++++..|. +++|.|++|||.
T Consensus       178 ~~l~v~~G~~vrlrliN~~~-~~h~~hlhGh~f~vi-~~dG~~~~~p~~~dtv~l~pger~~v~~~a~~pG~w~~hCH~  254 (318)
T 3g5w_A          178 QPIRVKKGDVIRLRLIGAGD-HVHAIHTHGHISQIA-FKDGFPLDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHV  254 (318)
T ss_dssp             CCEEECTTCEEEEEEEECSS-SCEEEEETTSCEEEE-EETTEEEEEEEEESEEEECTTCEEEEEEECCSCSEEEEEESS
T ss_pred             ccEEeCCCCEEEEEEEeCCC-ceEEEEECCcEEEEE-ecCCcccCCCccccEEEECCCCEEEEEEECCCCeeEEEEecc
Confidence            35899999999999999987 789999999887643 3687542     23556899999999999 999999999994

>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}

Probab=99.37  E-value=1.3e-12  Score=90.40  Aligned_cols=72  Identities=15%  Similarity=0.180  Sum_probs=57.8

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCC-CCCC-------cccccccCCCCEEEEEEc-CCCeeeEEcc
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYS-DGVP-------FVTQCPITQGNTFRYQFT-ANAGTHFWHA   73 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~-DG~~-------~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~   73 (75)
                      ..+++++|++++++|.|... ..|+||+||..+...... +|.+       ...+..|.||++.+..|+ +.+|.|+|||
T Consensus       385 ~~~~~~~G~~v~w~l~N~~~-~~Hp~HlHG~~F~vl~~~~~g~~~~~~~~~~kDTv~v~Pg~~~~i~~~~d~pG~w~~HC  463 (481)
T 3zx1_A          385 IDLSSKLGVVEDWIVINKSH-MDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHC  463 (481)
T ss_dssp             CCEEEETTCCEEEEEEECSS-SCEEEEETTCCEEEEEEEETTEEEECSSCCEESEEEECTTCEEEEEECCCSCEEEEEEE
T ss_pred             ceEEeCCCCEEEEEEEcCCC-CceeEEEeccEEEEEEecccCCCCCcccCcccceEEECCCCEEEEEEEcCCCeeEEEEc
Confidence            45899999999999999877 899999999877643210 3421       123556899999999999 9999999999


Q ss_pred             CC
Q psy88            74 HT   75 (75)
Q Consensus        74 H~   75 (75)
                      |.
T Consensus       464 Hi  465 (481)
T 3zx1_A          464 HI  465 (481)
T ss_dssp             SS
T ss_pred             CC
Confidence            94

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}

Probab=99.32  E-value=4.1e-12  Score=82.75  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=55.9

Q ss_pred             ccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCC-----cccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVP-----FVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~-----~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .+|.++.||++++++.|.... ..+++|+||..+...  .+|..     ......|.||++.+..|. +++|+|.||||.
T Consensus       195 ~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~--~~g~~~~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~  272 (288)
T 3gdc_A          195 FPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYY--PTGTMLTPSEYTDTISQVQGQRGILELRFPYPGKFMFHAHK  272 (288)
T ss_dssp             SCEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEE--ETTCCSSCSEEESEEEEETTCEEEEEECCCSCEEEEEECSS
T ss_pred             cccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEE--cCCCccCCCceeeEEEeCCCceEEEEEECCCCEEEEEEecC
Confidence            368999999999999998751 249999999876532  23321     123456899999999999 999999999994

>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A

Probab=99.31  E-value=6e-12  Score=85.85  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=57.2

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCC-----CcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV-----PFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~-----~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++.++.|+.+++.+.|... .+|.||+||..+.... .+|.     +...+..|+||+..+..|+ +.+|.|+||||.
T Consensus       349 ~~~~~~g~~~~~~~~N~~~-~~HP~HLHG~~F~Vl~-~~g~~~~~p~~rDTv~v~p~~~v~i~f~adnpG~w~~HCHi  424 (439)
T 2xu9_A          349 DLKGQAQTVEVWEVENQGD-MDHPFHLHVHPFQVLS-VGGRPFPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHI  424 (439)
T ss_dssp             CEEECTTCEEEEEEEECSS-SCEEEEESSCCBEEEE-ETTEECSSCCCBSEEEECTTCEEEEEEECCSCEEEEEEESS
T ss_pred             ceecCCCCEEEEEEEcCCC-CCCCceeCCCcEEEEe-eCCCCCCCCCCeEEEEeCCCCEEEEEEEcCCCCCEEEECCc
Confidence            5789999999999999987 8999999998875432 2332     1223556899999999999 999999999994

>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*

Probab=99.31  E-value=6.4e-12  Score=87.03  Aligned_cols=72  Identities=21%  Similarity=0.285  Sum_probs=55.7

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC--------ccccccc-CCCCEEEEEEc-CCCeeeEEc
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP--------FVTQCPI-TQGNTFRYQFT-ANAGTHFWH   72 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~--------~~~~~~i-~pG~~~~y~~~-~~~Gt~~YH   72 (75)
                      .+++++.|+.++|.+.|+....+|.||+||..+.... .+|.+        ...+..| +||+.....|+ +++|.|+||
T Consensus       373 ~~~~v~~g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~-~~~~~~~n~~~p~~rDTV~V~ppg~~v~irf~adnPG~W~~H  451 (503)
T 1hfu_A          373 SVYELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVR-SAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFH  451 (503)
T ss_dssp             SEEEECSSCEEEEEEECCSTTCCCEEEETTCCEEEEE-CTTCCCCCCSSBCEESEEECCSTTCEEEEEEECCSCEEEEEE
T ss_pred             eEEEccCCCEEEEEEECCCCCCCCCEEEecceEEEEe-cCCCCccccCCCCeeeeEEecCCCceEEEEEEcCCCeeeeEe
Confidence            3589999999999999543227999999998876432 22222        1234568 89999999999 999999999


Q ss_pred             cCC
Q psy88            73 AHT   75 (75)
Q Consensus        73 ~H~   75 (75)
                      ||.
T Consensus       452 CHi  454 (503)
T 1hfu_A          452 CHI  454 (503)
T ss_dssp             ESS
T ss_pred             cCc
Confidence            994

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A

Probab=99.30  E-value=8.7e-12  Score=70.19  Aligned_cols=67  Identities=15%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC----cccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP----FVTQCPITQGNTFRYQFT--ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~----~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|... .+|++++++...+.   .+|..    ......+.||+++++.|+  +.+|+|||||+
T Consensus        19 P~~i~v~~Gd~V~~--~n~~~-~~H~~~~~~~~~~~---~~g~~~~~~~~~~~~~~pG~~~~~~f~~~~~~G~y~y~C~   91 (106)
T 2gim_A           19 PAKLTIKPGDTVEF--LNNKV-PPHNVVFDAALNPA---KSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCE   91 (106)
T ss_dssp             SSEEEECTTCEEEE--EECSS-SCCCBEECSSSSTT---CCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSEEEEEECT
T ss_pred             CCEEEECCCCEEEE--EECCC-CCceEEEeCCCCcc---cccccchhccccceeeCCCCEEEEEEecCCCCceEEEEeC
Confidence            45799999999765  58876 78999988754421   12310    011234889999999997  78999999996

>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3

Probab=99.30  E-value=6.5e-12  Score=87.35  Aligned_cols=69  Identities=17%  Similarity=0.313  Sum_probs=55.0

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC--------ccccccc-CCCCEEEEEEc-CCCeeeEEc
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP--------FVTQCPI-TQGNTFRYQFT-ANAGTHFWH   72 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~--------~~~~~~i-~pG~~~~y~~~-~~~Gt~~YH   72 (75)
                      .+++++.|+.++|.+.|  . .+|.||+||..+.... .+|.+        ...+..| +||+.....|+ +++|.|+||
T Consensus       397 ~~~~v~~g~~vei~l~N--~-~~HP~HLHGh~F~Vl~-~~~~~~~n~~~p~~rDTV~V~p~gg~v~Irf~aDNPG~W~~H  472 (521)
T 1v10_A          397 AVISLPANQVIEISIPG--G-GNHPFHLHGHNFDVVR-TPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLH  472 (521)
T ss_dssp             TEEEECTTCEEEEEEEC--C-BSCEEEESSCCEEEEE-CTTCSCCCCSSCCEESEEECCBSSCEEEEEEECCSCEEEEEE
T ss_pred             eEEEecCCCEEEEEEcC--C-CCCCEEEccceEEEEe-cCCCCccccCCCCeeeeEEeCCCCcEEEEEEEeCCCeeEEEe
Confidence            35889999999999999  5 7999999998876432 22222        1235568 79999999999 999999999


Q ss_pred             cCC
Q psy88            73 AHT   75 (75)
Q Consensus        73 ~H~   75 (75)
                      ||.
T Consensus       473 CHi  475 (521)
T 1v10_A          473 CHI  475 (521)
T ss_dssp             ESC
T ss_pred             eCh
Confidence            994

>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}

Probab=99.28  E-value=7.5e-12  Score=87.35  Aligned_cols=71  Identities=20%  Similarity=0.230  Sum_probs=55.7

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCC-------CC----------------CcccccccCCCCEEEE
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSD-------GV----------------PFVTQCPITQGNTFRY   60 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~D-------G~----------------~~~~~~~i~pG~~~~y   60 (75)
                      .++++.|+.++|.|.|... .+|.||+||..+.......       |.                +...+..|+||+....
T Consensus       371 ~~~~~~g~~v~ivi~N~~~-~~HP~HLHGh~F~Vl~~~~~~~~~~~G~p~~~~~~~~~~~~~~p~~RDTv~V~pgg~v~I  449 (534)
T 1zpu_A          371 TFILEKDEIVEIVLNNQDT-GTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFVI  449 (534)
T ss_dssp             EEEECTTCEEEEEEEECSS-SCEEEEETTCCEEEEEECCCCCGGGTCCCCCCBTTBCCCCCSSCEEESEEEECTTCEEEE
T ss_pred             EEEeCCCCEEEEEEeCCCC-CCCCeEecCCceEEEeecCCccccccCcccccCccccccccCCCCeeeEEEeCCCCEEEE
Confidence            5889999999999999987 8999999998765322111       20                0112455889999999


Q ss_pred             EEc-CCCeeeEEccCC
Q psy88            61 QFT-ANAGTHFWHAHT   75 (75)
Q Consensus        61 ~~~-~~~Gt~~YH~H~   75 (75)
                      .|+ +.+|.|+||||.
T Consensus       450 rF~aDNPG~W~~HCHi  465 (534)
T 1zpu_A          450 RFKADNPGVWFFHCHI  465 (534)
T ss_dssp             EEECCSCEEEEEEECC
T ss_pred             EEEeCCCeeEEEEeCc
Confidence            999 999999999994

>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2

Probab=99.28  E-value=1.2e-11  Score=87.55  Aligned_cols=71  Identities=13%  Similarity=0.124  Sum_probs=58.9

Q ss_pred             ccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++|++++|++++++|.|.... ..+++|+||..+... ..||. ......|.||+++++.|. +++|+|+||||.
T Consensus       239 p~l~v~~G~~vrlrliN~~~~~~~h~~hlhG~~f~vi-~~d~~-~~d~v~l~pg~r~~v~~~~~~pG~w~~hch~  311 (647)
T 1sdd_B          239 PGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLEN-GTQQH-QLGVWPLLPGSFKTLEMKASKPGWWLLDTEV  311 (647)
T ss_dssp             CCCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEEC-SSSCE-EESSEEECTTEEEEEEEECCSSEEEEEECCC
T ss_pred             CCeEEcCCCEEEEEEEeCCCCCcceeEEEcCcEEEEe-cCCCc-ccceEEECCCeEEEEEEEeccceEeecccCc
Confidence            578999999999999998752 379999999887643 24653 334567999999999999 889999999995

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A

Probab=99.26  E-value=2.8e-11  Score=73.00  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=43.9

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCC------CCCccc-ccccCCCC--EEEEEEcCCCeeeEEcc
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSD------GVPFVT-QCPITQGN--TFRYQFTANAGTHFWHA   73 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~D------G~~~~~-~~~i~pG~--~~~y~~~~~~Gt~~YH~   73 (75)
                      ++|++++||+|+|+++|..+   ...|.+.+......+.+      ...... ...|.||+  +.+|.|+-++|+|||||
T Consensus        61 p~i~V~~GD~V~~~~tN~~~---~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~~pGtY~y~C  137 (154)
T 2cal_A           61 PTLEIPAGATVDVTFINTNK---GFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVC  137 (154)
T ss_dssp             CEEEECTTCEEEEEEEECCT---TCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECCCSEEEEEEC
T ss_pred             CEEEEeCCCEEEEEEEcCCC---CeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEECCceEEEEC
Confidence            68999999999999999742   12333433322111111      000000 01578999  88887776899999999


Q ss_pred             C
Q psy88            74 H   74 (75)
Q Consensus        74 H   74 (75)
                      +
T Consensus       138 ~  138 (154)
T 2cal_A          138 Q  138 (154)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}

Probab=99.24  E-value=1.6e-11  Score=81.45  Aligned_cols=71  Identities=24%  Similarity=0.380  Sum_probs=59.2

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-----ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-----VTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-----~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .+|+++.|++++++|.|... ..+.+|+||..+... ..||.+.     .....|.||++++..|. +++|.|++|||.
T Consensus       179 ~~~~v~~G~~vrlrliN~~~-~~h~~hlhGh~f~vi-~~DG~~~~~p~~~dtv~l~pg~r~~v~~~~~~pG~w~~hch~  255 (339)
T 2zwn_A          179 QPLRVKKGDVVKIRFFGAGG-GIHAMHSHGHDMLVT-HKDGLPLDSPYYADTVLVSPGERYDVIIEADNPGRFIFHDHV  255 (339)
T ss_dssp             CCEEECTTCEEEEEEEECSS-SCEEEEETTCCEEEE-EETTEEEEEEEEESEEEECTTCEEEEEEECCSCSEEEEEECC
T ss_pred             ccEEECCCCEEEEEEEeCCC-ceEEEEECCcEEEEE-EeCCeecCCCcEEEEEEECCCCEEEEEEEeCCCeeEEEEEec
Confidence            35899999999999999987 799999999877643 3688532     23556889999999999 999999999994

>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*

Probab=99.23  E-value=1.5e-11  Score=85.96  Aligned_cols=72  Identities=24%  Similarity=0.240  Sum_probs=55.2

Q ss_pred             cEEEecCCEEEEEEEeCCC-----CCCceEEeCCccccCCCCCCCC--------------CcccccccCCCCEEEEEEc-
Q psy88             4 PKNVCEGDRVVVDVRNSMD-----GLENTIHWHGIHQRGTQYSDGV--------------PFVTQCPITQGNTFRYQFT-   63 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~-----~~~~~iH~HG~~~~~~~~~DG~--------------~~~~~~~i~pG~~~~y~~~-   63 (75)
                      .++++.|+.|+|.|.|...     ..+|.||+||..+......+|.              +...+..|+||+.....|+ 
T Consensus       418 ~~~~~~g~~v~ivi~N~~~~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~n~~~p~~RDTv~vpp~g~v~Irf~a  497 (552)
T 1aoz_A          418 VYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVA  497 (552)
T ss_dssp             CEEECTTCEEEEEEEECCCSSTTCCCCEEEEETTCCEEEEEEEESSCCGGGGGGSCCSSCCEESEEEECTTEEEEEEEEC
T ss_pred             EEEecCCCEEEEEEeCCcccccccCCCCCEEEcCCceEEEecccCccCcccccccccCCCCccCeEEeCCCceEEEEEEc
Confidence            4789999999999999863     1469999999886532211221              1123556899999999999 


Q ss_pred             CCCeeeEEccCC
Q psy88            64 ANAGTHFWHAHT   75 (75)
Q Consensus        64 ~~~Gt~~YH~H~   75 (75)
                      +++|.|++|||.
T Consensus       498 DNPG~W~~HCHi  509 (552)
T 1aoz_A          498 DNPGVWAFHCHI  509 (552)
T ss_dssp             CSCEEEEEEESS
T ss_pred             CCCeEEEEEeee
Confidence            999999999994

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.22  E-value=3.4e-11  Score=85.29  Aligned_cols=62  Identities=29%  Similarity=0.348  Sum_probs=47.4

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++.++|..+ ..-.  +||+..+.    .|.    ...+.||++++|.|. +++|+||||||
T Consensus       512 pp~I~V~~Gd~V~~~ltN~d~-~~Dv--~Hgf~ip~----~gv----~~~i~PG~t~t~~Fta~~pGtY~yhC~  574 (595)
T 1fwx_A          512 IESFTVKEGDEVTVIVTNLDE-IDDL--THGFTMGN----YGV----AMEIGPQMTSSVTFVAANPGVYWYYCQ  574 (595)
T ss_dssp             CSEEEEETTCEEEEEEEECCC-STTC--CEEEEETT----TTE----EEEECTTCEEEEEEECCSCEEEEEECC
T ss_pred             CCEEEEECCCEEEEEEEeCCC-CCCc--eeeEEecC----CCc----ceeeCCCCeEEEEEECCCCEEEEEECC
Confidence            578999999999999999854 2111  25554432    222    245899999999999 99999999998

>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*

Probab=99.22  E-value=3.1e-11  Score=84.33  Aligned_cols=72  Identities=18%  Similarity=0.181  Sum_probs=55.5

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCC----------CcccccccCCCCEEEEEEc--CCCeeeEE
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV----------PFVTQCPITQGNTFRYQFT--ANAGTHFW   71 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~----------~~~~~~~i~pG~~~~y~~~--~~~Gt~~Y   71 (75)
                      .+.++.|+.+++.|.|.....+|.||+||..+......+|.          +...+..|+||+..+..|.  +.+|.|+|
T Consensus       376 l~~v~~G~~~~w~i~N~~~~~~HP~HLHG~~F~Vl~~~~g~~~~~~~~~~~~~rDTV~v~pg~~v~I~~~~adnpG~w~~  455 (534)
T 3abg_A          376 LANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWLGRRETVVVEAHYAPFPGVYMF  455 (534)
T ss_dssp             CCEECTTCEEEEEEEECSSSCCCCEEESSCCEEEEEESSCCSSSCCCSGGGSCBSEECCCSSEEEEEEEECCSCCEEEEE
T ss_pred             eeeccCCCEEEEEEEcCCCCCCcCEEECCeeEEEEEEcCCCCcCcCCccccCCcCeEEcCCCCEEEEEEEECCCCccEEE
Confidence            35789999999999998742589999999887644322331          1123456889999999987  89999999


Q ss_pred             ccCC
Q psy88            72 HAHT   75 (75)
Q Consensus        72 H~H~   75 (75)
                      |||.
T Consensus       456 HCHi  459 (534)
T 3abg_A          456 HCHN  459 (534)
T ss_dssp             EESC
T ss_pred             ecCh
Confidence            9994

>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*

Probab=99.22  E-value=5.3e-11  Score=82.57  Aligned_cols=70  Identities=17%  Similarity=0.273  Sum_probs=53.6

Q ss_pred             cEEEecCCEEEEEEE-eCCCCCCceEEeCCccccCCCCCCCC--------CcccccccCC-CCEEEEEEc-CCCeeeEEc
Q psy88             4 PKNVCEGDRVVVDVR-NSMDGLENTIHWHGIHQRGTQYSDGV--------PFVTQCPITQ-GNTFRYQFT-ANAGTHFWH   72 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~-N~~~~~~~~iH~HG~~~~~~~~~DG~--------~~~~~~~i~p-G~~~~y~~~-~~~Gt~~YH   72 (75)
                      +++++.|+.|+|.|. |... .+|+||+||..+.... .+|.        +...+..|+| |+...++|. ++||.|+||
T Consensus       375 v~~~~~g~~V~ivl~~n~~~-~~HP~HLHGh~F~vl~-~~g~~~~n~~~P~~rDtv~v~~~g~~~~irf~adnPG~W~~H  452 (495)
T 3t6v_A          375 VISLPSNSTIEIALPAGAAG-GPHPFHLHGHDFAVSE-SASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLH  452 (495)
T ss_dssp             EEEECTTCEEEEEEECCSSS-CCCEEEETTCCEEEEE-CTTCCCCCSSSCCEESEEECCSTTCEEEEEEECCSCEEEEEE
T ss_pred             eEEecCCCEEEEEEccCCCC-CCcceeecCCcEEEEe-cCCCCCcccCCCCCccEEEcCCCCcEEEEEEEcCCCeeEEEE
Confidence            489999999999998 5555 7999999998765321 2221        1122445776 999999999 999999999


Q ss_pred             cCC
Q psy88            73 AHT   75 (75)
Q Consensus        73 ~H~   75 (75)
                      ||.
T Consensus       453 CHi  455 (495)
T 3t6v_A          453 CHI  455 (495)
T ss_dssp             ESC
T ss_pred             ecc
Confidence            994

>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}

Probab=99.20  E-value=2.7e-11  Score=84.62  Aligned_cols=71  Identities=14%  Similarity=0.112  Sum_probs=54.2

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC-------------------------------CCcccccc
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG-------------------------------VPFVTQCP   51 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG-------------------------------~~~~~~~~   51 (75)
                      ..+.++.|+.+++.|.|... .+|.||+||..+.... .+|                               ...-.+..
T Consensus       472 ~~~~~~~g~~~~w~i~N~~~-~~HP~HLHG~~F~Vl~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kDTv~  549 (612)
T 3gyr_A          472 LGFTIGEGTHEQWTFLNLSP-ILHPMHIHLADFQVLG-RDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQ  549 (612)
T ss_dssp             CCEEEETTCEEEEEEEECSS-SCEEEEESSCEEEEEE-EEEEECTTEETTTTEESSCEEEEEEEECCCCTTCSSCBSEEE
T ss_pred             cceEeCCCCEEEEEEEcCCC-CCcCEeECCCcEEEEe-ecCCcCccccccccccccccccccccccCcccccCCCCcEEE
Confidence            45789999999999999988 8999999998764321 000                               00012345


Q ss_pred             cCCCCEEEEEEc--CCCeeeEEccCC
Q psy88            52 ITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus        52 i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      |+||+..+..|+  +.+|.|+||||.
T Consensus       550 v~~~~~v~i~~rfadnpG~w~~HCHi  575 (612)
T 3gyr_A          550 VPGPQGLRVMGKFDGAYGRFMYHCHL  575 (612)
T ss_dssp             ECSSEEEEEEEECCSCCEEEEEEESS
T ss_pred             ECCCCEEEEEEEeCCCCcceEEcCCC
Confidence            889999999987  889999999994

>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3

Probab=99.18  E-value=9e-13  Score=86.47  Aligned_cols=68  Identities=13%  Similarity=0.167  Sum_probs=43.9

Q ss_pred             ccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +.|++++||+++++|.|.... ..+++|+||..+.    .||.. ..+..|.||+++++.|. +++|+|+||||.
T Consensus       215 p~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~----~dG~~-~dtv~l~pger~~v~~~~~~pG~~~~hch~  284 (306)
T 1sdd_A          215 PDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLE----QNHHK-ISAITLVSATSTTANMTVSPEGRWTIASLI  284 (306)
T ss_dssp             CCCCCCCC------BBCCCSSSCEECCBCSSTTCE----ETTEE-CSCCCEETTCCBC--------CCCCCBCCS
T ss_pred             cceEEcCCCEEEEEEEeCCCCCccEEEEECCcEee----eCCEE-cceEEECCCcEEEEEEEcCCCeEEEEEeCC
Confidence            568999999999999999762 3578999997654    37743 34566899999999999 999999999994

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1

Probab=99.18  E-value=1.9e-10  Score=63.84  Aligned_cols=64  Identities=17%  Similarity=0.173  Sum_probs=46.8

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc----ccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|..+ .+|++++++...+     +|...    .....+.||+++++.|. .+|+|+|||+
T Consensus        17 P~~i~v~~G~~V~~--~n~~~-~~H~~~~~~~~~p-----~~~~~~~~~~~~~~~~pG~~~~~tf~-~~G~y~y~C~   84 (98)
T 2plt_A           17 PKTLTIKSGETVNF--VNNAG-FPHNIVFDEDAIP-----SGVNADAISRDDYLNAPGETYSVKLT-AAGEYGYYCE   84 (98)
T ss_dssp             SSEEEECTTCEEEE--EECSS-CCEEEEECGGGSC-----TTCCHHHHCEEEEECSTTCEEEEECC-SCEEEEEECG
T ss_pred             CCEEEECCCCEEEE--EECCC-CceEEEEeCCCCC-----CccccccccccceecCCCCEEEEEeC-CCeEEEEEcC
Confidence            45799999998765  78876 7999999986433     22110    11235889999988765 7899999996

>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*

Probab=99.16  E-value=1.6e-10  Score=80.22  Aligned_cols=70  Identities=19%  Similarity=0.279  Sum_probs=52.8

Q ss_pred             cEEEecCCEEEEEEE---eCCCCCCceEEeCCccccCCCCCCCC--------CcccccccCC---CCEEEEEEc-CCCee
Q psy88             4 PKNVCEGDRVVVDVR---NSMDGLENTIHWHGIHQRGTQYSDGV--------PFVTQCPITQ---GNTFRYQFT-ANAGT   68 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~---N~~~~~~~~iH~HG~~~~~~~~~DG~--------~~~~~~~i~p---G~~~~y~~~-~~~Gt   68 (75)
                      +++++.|+.|+|.|.   |... .+|+||+||..+.... .+|.        +...+..|+|   |+...++|+ ++||.
T Consensus       371 v~~~~~g~~V~ivl~~~~n~~~-~~HP~HLHGh~F~Vl~-~~g~~~~n~~~P~~rDtv~v~~~~pg~~~~irf~adnPG~  448 (499)
T 3pxl_A          371 VYVLPSNASIEISFPATAAAPG-APHPFHLHGHTFAVVR-SAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGP  448 (499)
T ss_dssp             EEEECTTCEEEEEEECCTTSCS-CSCEEEETTCCEEEEE-CTTCCCCCSSSCCEESEEECCCGGGTCEEEEEEECCSCEE
T ss_pred             eEEecCCCEEEEEEecCcccCC-CCccceecCCcEEEEe-ccCCcccccCCCCccceEEcCCcCCCcEEEEEEEcCCCce
Confidence            589999999999999   5555 7899999998764321 1221        1122344665   999999999 99999


Q ss_pred             eEEccCC
Q psy88            69 HFWHAHT   75 (75)
Q Consensus        69 ~~YH~H~   75 (75)
                      |+||||.
T Consensus       449 W~~HCHi  455 (499)
T 3pxl_A          449 WFLHCHI  455 (499)
T ss_dssp             EEEEESS
T ss_pred             EEEEeCC
Confidence            9999994

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A

Probab=99.15  E-value=1.4e-10  Score=64.93  Aligned_cols=59  Identities=12%  Similarity=0.057  Sum_probs=47.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|+++.||+|++.++|... .++.+...+...             ...+.||++.++.|+ +.+|+|.|+|.
T Consensus        27 P~~i~v~~G~tV~~~~~n~d~-~~H~~~~~~~~~-------------~~~~~pg~~~~~~~t~~~~G~Y~y~C~   86 (100)
T 4hci_A           27 PNVITIPINESTTLLLKNKGK-SEHTFTIKKLGI-------------DVVVESGKEKNITVKPKSAGTYELICR   86 (100)
T ss_dssp             SSEEEECTTSCEEEEEEECSS-SCEEEEEGGGTE-------------EEEECTTCEEEEEECCCSCEEEEEECT
T ss_pred             CCEEEECCCCEEEEEEEcCCC-ceEEEEEecCCc-------------ceeecCCcceeEEEecccCceEEEECc
Confidence            457999999999999999876 566665443321             123789999999999 99999999994

>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A

Probab=99.15  E-value=5.2e-11  Score=78.67  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=58.6

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc----ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .+|+++.|++++++|.|......+.+|+||..+... +.||.+.    .....|.||++++..+. +++|.||+|||.
T Consensus       214 ~~l~v~~G~~vRlRliN~~~~~~~~~~l~Gh~f~vi-~~DG~~~~p~~~d~l~l~pGer~dv~v~~~~pG~y~l~~h~  290 (327)
T 1kbv_A          214 NALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKV-YVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHS  290 (327)
T ss_dssp             GCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSEE-EGGGSSCEECSBSEEEECTTEEEEEEEEECSCEEEEEEESS
T ss_pred             eeEEeCCCCEEEEEEECCCCCCceeEEEeCCEEEEE-EcCCCcCCCCceeEEEECCCCEEEEEEEeCCCeEEEEEecc
Confidence            368999999999999998654689999999876543 3677532    23456899999999999 889999999994

>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A

Probab=99.13  E-value=4.6e-11  Score=82.92  Aligned_cols=72  Identities=19%  Similarity=0.280  Sum_probs=54.1

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCC---------------CCCC---------cccccccCCCCEE
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYS---------------DGVP---------FVTQCPITQGNTF   58 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~---------------DG~~---------~~~~~~i~pG~~~   58 (75)
                      ..+.++.|+.+++.|.|... .+|.||+||..+......               .|.+         ...+..|+||+..
T Consensus       397 ~~~~~~~g~~~~w~l~N~~~-~~HP~HlHG~~F~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rDTv~v~pg~~~  475 (513)
T 2wsd_A          397 VTETPKVGTTEIWSIINPTR-GTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVL  475 (513)
T ss_dssp             CCBCCBTTCEEEEEEEECSS-SCEEEEESSCCEEEEEEEEBCHHHHHHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEEE
T ss_pred             ccEecCCCCEEEEEEEcCCC-CCcCEeEeCceEEEEEecCcccccccccccccccCCCCCCCccccCcccEEEeCCCCEE
Confidence            34678999999999999887 799999999886532110               1111         1224558899998


Q ss_pred             EEEEc--CCCeeeEEccCC
Q psy88            59 RYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus        59 ~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++.++  +.+|.|+||||.
T Consensus       476 ~i~~~f~dnpG~w~~HCHi  494 (513)
T 2wsd_A          476 RIAATFGPYSGRYVWHCHA  494 (513)
T ss_dssp             EEEEECCSCCEEEEEEESC
T ss_pred             EEEEEecCCCCCEEEEcCC
Confidence            88888  689999999994

>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...

Probab=99.08  E-value=2.2e-10  Score=79.49  Aligned_cols=70  Identities=17%  Similarity=0.158  Sum_probs=53.7

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-------ccccccCCCCEEEEEEc-CC----CeeeEE
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-------VTQCPITQGNTFRYQFT-AN----AGTHFW   71 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-------~~~~~i~pG~~~~y~~~-~~----~Gt~~Y   71 (75)
                      .+++++|++++++|.|..+..+|+||+||..+.... .+|.+.       -.+..|. |++.+..+. +.    +|.|+|
T Consensus       393 ~~~~~~G~~e~w~l~N~~~~~~Hp~HlHg~~F~Vl~-~~g~~~~~~~~~~kDTV~v~-g~~~~i~~~f~~~~~~~G~~m~  470 (488)
T 3od3_A          393 MFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILS-ENGKPPAAHRAGWKDTVKVE-GNVSEVLVKFNHDAPKEHAYMA  470 (488)
T ss_dssp             SEECCBSSCEEEEEECTTCCCCEEEEETTCCBEEEE-BTTBCCCGGGSSSBSEEEES-SSEEEEEECBCSCCCGGGCEEE
T ss_pred             ceEcCCCCEEEEEEEeCCCCCCccEEEcCceEEEec-cCCCccccccCCceeEEEeC-CCEEEEEEEeccCCCCCCCEEE
Confidence            479999999999999998436899999998876532 345331       1234477 999999998 43    579999


Q ss_pred             ccCC
Q psy88            72 HAHT   75 (75)
Q Consensus        72 H~H~   75 (75)
                      |||.
T Consensus       471 HCH~  474 (488)
T 3od3_A          471 HCHL  474 (488)
T ss_dssp             EESS
T ss_pred             eCCc
Confidence            9994

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=99.07  E-value=7.4e-10  Score=60.48  Aligned_cols=60  Identities=18%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|..+ .+|+++.++....      +   .....+.||+++++.| +.+|+|+|||+
T Consensus        18 P~~i~v~~Gd~V~~--~n~~~-~~H~v~~~~~~~~------~---~~~~~~~~g~~~~~~f-~~~G~y~~~C~   77 (91)
T 1bxv_A           18 PSTIEIQAGDTVQW--VNNKL-APHNVVVEGQPEL------S---HKDLAFSPGETFEATF-SEPGTYTYYCE   77 (91)
T ss_dssp             SSEEEECTTCEEEE--EECSS-CCEEEEETTCGGG------C---EEEEECSTTCEEEEEC-CSCEEEEEECT
T ss_pred             CCEEEECCCCEEEE--EECCC-CCcEEEEeCCCcc------C---cccceeCCCCEEEEEe-CCCEEEEEEeC
Confidence            45789999999865  58765 6889888762100      0   1123488999888866 78999999997

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A

Probab=99.06  E-value=1.5e-09  Score=63.84  Aligned_cols=72  Identities=11%  Similarity=0.052  Sum_probs=49.8

Q ss_pred             cccEEEecCCEEEEEEEe--CCCCCCceEEeCCcc--cc--------------CCCCCCCCC-cccccccCCCCEEEEEE
Q psy88             2 LYPKNVCEGDRVVVDVRN--SMDGLENTIHWHGIH--QR--------------GTQYSDGVP-FVTQCPITQGNTFRYQF   62 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N--~~~~~~~~iH~HG~~--~~--------------~~~~~DG~~-~~~~~~i~pG~~~~y~~   62 (75)
                      +..|+++.||+|+++++|  ..+ .+|.++.+...  ..              ..+..|... ......|.||++.++.|
T Consensus        32 P~~i~v~~G~tV~~~~~N~~~~~-~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG~~~~~~~  110 (140)
T 1qhq_A           32 QTSLSLPANTVVRLDFVNQNNLG-VQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTF  110 (140)
T ss_dssp             CSEEEEETTCEEEEEEEECCSSC-CCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEE
T ss_pred             CCeEEECCCCEEEEEEECCCCCC-CceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCCceeEEEE
Confidence            457999999999999999  665 78888877321  00              000001101 01123588999999999


Q ss_pred             c-CCCeeeEEccC
Q psy88            63 T-ANAGTHFWHAH   74 (75)
Q Consensus        63 ~-~~~Gt~~YH~H   74 (75)
                      . +.+|+|+|+|+
T Consensus       111 ~~~~~G~y~f~C~  123 (140)
T 1qhq_A          111 RTPAPGTYLYICT  123 (140)
T ss_dssp             ECCSSEEEEEECC
T ss_pred             EeCCCeeEEEEeC
Confidence            9 99999999996

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A

Probab=99.04  E-value=2.3e-10  Score=63.55  Aligned_cols=67  Identities=13%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|... .+|+++.++...+.. ..++.. .....+.||+++++.| +.+|+|+|||+
T Consensus        18 P~~i~v~~G~~V~~--~n~~~-~~H~~~~~~~~~pg~-~~~~~~-~~~~~~~pG~~~~~tf-~~~G~y~~~C~   84 (98)
T 1pcs_A           18 PSTVTIKAGEEVKW--VNNKL-SPHNIVFDADGVPAD-TAAKLS-HKGLLFAAGESFTSTF-TEPGTYTYYCE   84 (98)
T ss_dssp             SSEEEECTTCEEEE--EECSS-CCEEEEECCSSSCHH-HHHHHC-EEEEECSTTCEEEEEC-CSCEEEEEECG
T ss_pred             CCEEEECCCCEEEE--EECCC-CCcEEEEeCCCCCcc-cccccc-ccccccCCCCEEEEEc-CCCeEEEEEcC
Confidence            45799999998765  48765 689998876432100 000000 1123588999998877 68999999995

>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*

Probab=99.02  E-value=5.7e-10  Score=78.22  Aligned_cols=72  Identities=21%  Similarity=0.183  Sum_probs=50.3

Q ss_pred             cEEEecCCEEEEEEEeCCC----CCCceEEeCCccccCCCCCC---------CC---------------CcccccccCCC
Q psy88             4 PKNVCEGDRVVVDVRNSMD----GLENTIHWHGIHQRGTQYSD---------GV---------------PFVTQCPITQG   55 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~----~~~~~iH~HG~~~~~~~~~D---------G~---------------~~~~~~~i~pG   55 (75)
                      .+.+.+++++++.+.|...    ..+|.||+||..+.......         |.               +...+..|+||
T Consensus       405 ~~~~~~~~~v~~~vi~n~~~~~~~~~HP~HLHGh~F~Vl~~g~~~~~~~~~~g~~~~~~~~~~~n~~~p~~RDTV~Vp~~  484 (559)
T 2q9o_A          405 IVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAG  484 (559)
T ss_dssp             EEEECCSSCEEEEEEEECTTSSCCCCEEEEESSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCCEESEEEECTT
T ss_pred             EEEcCCCCEEEEEEEeCCCccccCCCCcEEECCCceEEEecccccccccccccccCccccccccccCCCCccceEEccCC
Confidence            3677777777765555432    27999999998765322111         21               11234558899


Q ss_pred             CEEEEEEc-CCCeeeEEccCC
Q psy88            56 NTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus        56 ~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +.....|+ +.+|.|+||||.
T Consensus       485 g~v~IrF~adNPG~W~~HCHi  505 (559)
T 2q9o_A          485 GWLLLAFRTDNPGAWLFHCHI  505 (559)
T ss_dssp             SEEEEEEECCSCEEEEEEECC
T ss_pred             ccEEEEEEcCCCeeEEEEecc
Confidence            99999999 999999999994

>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*

Probab=99.02  E-value=1.2e-10  Score=84.26  Aligned_cols=71  Identities=10%  Similarity=-0.018  Sum_probs=58.3

Q ss_pred             ccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ..|+++.|++++++|.|.... ..+++|+||..+... ..||. ......|.||++.+..|. +++|.|++|||.
T Consensus       368 ~~l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv-~~dg~-~~Dtv~l~Pg~~~~v~~~ad~pG~w~~hcH~  440 (770)
T 2r7e_B          368 PGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVR-KKEEY-KMALYNLYPGVFETVEMLPSKAGIWRVECLI  440 (770)
T ss_dssp             CCCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECC-SSSCC-EESEEECCTTCCCEEEECCSSCBCCCBCCCS
T ss_pred             CCeEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEEE-ecCCc-eeeEEEECCCeEEEEEEEeCCCCceEEEecc
Confidence            458899999999999998641 379999999987754 35653 333566899999999999 999999999995

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A

Probab=99.01  E-value=2e-09  Score=59.77  Aligned_cols=64  Identities=13%  Similarity=0.203  Sum_probs=45.1

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|+  |.|... .+|+++.++...+     +|...      .....+.||+++++.|. .+|+|+|+|+
T Consensus        16 P~~i~v~~G~tV~--~~n~~~-~~H~~~~~~~~~p-----~g~~~~~~~~~~~~~~~~~G~~~~~~f~-~~G~y~~~C~   85 (99)
T 1byp_A           16 PSDLSIASGEKIT--FKNNAG-FPHNDLFDKKEVP-----AGVDVTKISMPEEDLLNAPGEEYSVTLT-EKGTYKFYCA   85 (99)
T ss_dssp             SSEEEECTTEEEE--EEECSS-CCBCCEECTTSSC-----TTCCHHHHSCCTTCCBCSTTCEEEEEEC-SCEEEEEECG
T ss_pred             CCEEEECCCCEEE--EEECCC-CcceEEEeCCCCc-----cccccccccccccceeeCCCCEEEEEeC-CCcEEEEEcC
Confidence            4578999999865  478876 7889888874332     22110      11224789999888774 8999999996

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*

Probab=98.98  E-value=8.7e-10  Score=61.05  Aligned_cols=64  Identities=14%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc--ccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF--VTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~--~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|+  |.|... .+|+++.++...+     +|...  .....+.||+++++.| +.+|+|+|+|+
T Consensus        18 P~~i~v~~G~~V~--~~n~~~-~~H~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~tf-~~~G~y~y~C~   83 (97)
T 1b3i_A           18 PKALSISAGDTVE--FVMNKV-GPHNVIFDKVPAG-----ESAPALSNTKLAIAPGSFYSVTL-GTPGTYSFYCT   83 (97)
T ss_dssp             SSEEEECTTCEEE--EEECSS-CCCCBEEEECCTT-----SCHHHHCBCCCCCSCSCCEEEEC-CSCSEEEEECS
T ss_pred             CCEEEECCCCEEE--EEECCC-CCeEEEEeCCCCc-----cccccccccceecCCCCEEEEEe-CCCeEEEEEcc
Confidence            4579999999865  558765 6788887764331     22111  0123478999988876 78999999996

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A

Probab=98.97  E-value=3.7e-09  Score=58.75  Aligned_cols=64  Identities=17%  Similarity=0.264  Sum_probs=44.3

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|... .+|+++.++...+     +|...      .....+.||+++++.| +.+|+|+|+|.
T Consensus        16 P~~i~v~~G~tV~~--~n~~~-~~H~v~~~~~~~p-----~~~~~~~~~~~~~~~~~~~G~~~~~tf-~~~G~y~~~C~   85 (99)
T 1plc_A           16 PSEFSISPGEKIVF--KNNAG-FPHNIVFDEDSIP-----SGVDASKISMSEEDLLNAKGETFEVAL-SNKGEYSFYCS   85 (99)
T ss_dssp             SSEEEECTTCEEEE--EECSS-CCBCCEECTTSSC-----TTCCHHHHCCCTTCCBCSTTCEEEEEC-CSCEEEEEECG
T ss_pred             CCEEEECCCCEEEE--EECCC-CceEEEEeCCCCc-----ccccccccccccCccccCCCCEEEEEE-CCCceEEEEcC
Confidence            45799999998755  78876 6888887764321     22110      0112478999988866 58999999995

>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}

Probab=98.96  E-value=1.2e-09  Score=77.13  Aligned_cols=67  Identities=19%  Similarity=0.267  Sum_probs=49.7

Q ss_pred             ecCCEEEEEEEeCC--CCCCceEEeCCccccCCCCCCCC---------------CcccccccCCCCEEEEEEc-CCCeee
Q psy88             8 CEGDRVVVDVRNSM--DGLENTIHWHGIHQRGTQYSDGV---------------PFVTQCPITQGNTFRYQFT-ANAGTH   69 (75)
Q Consensus         8 ~~Gd~v~i~~~N~~--~~~~~~iH~HG~~~~~~~~~DG~---------------~~~~~~~i~pG~~~~y~~~-~~~Gt~   69 (75)
                      +.|+.|+|.|.|..  . .+|+||+||..+.......|.               +...+..|+||+....+|+ ++||.|
T Consensus       444 ~~~~~VeiVi~n~~~~~-~~HP~HLHGh~F~vv~~g~G~f~~~~~~~~~nl~nP~~rDTv~v~~~g~~~irf~adNPG~W  522 (580)
T 3sqr_A          444 ANEEWVVYVIEDLTGFG-IWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW  522 (580)
T ss_dssp             --CCEEEEEEEECSSSC-CCEEEEESSCCEEEEEEESSCCCTTTSGGGCCCBSCCEESEEEECTTSEEEEEEESCSCEEE
T ss_pred             CCCcEEEEEEeCCCccc-cceeeEecCceEEEEecCCCccCccccccccccCCCceeeEEEeCCCceEEEEEEcCCCeee
Confidence            46999999999987  6 799999999875432111110               1123455889999999999 999999


Q ss_pred             EEccCC
Q psy88            70 FWHAHT   75 (75)
Q Consensus        70 ~YH~H~   75 (75)
                      ++|||.
T Consensus       523 ~~HCHi  528 (580)
T 3sqr_A          523 LLHCHI  528 (580)
T ss_dssp             EEEECS
T ss_pred             EEEECc
Confidence            999994

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A

Probab=98.96  E-value=2.1e-09  Score=62.73  Aligned_cols=60  Identities=10%  Similarity=0.060  Sum_probs=39.1

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++.+.|.    +     |++........+|....   .+.||+++++.| +.+|+|+|+|-
T Consensus        20 P~~i~V~~GdtV~f~~~~~----~-----H~v~~~~~~~P~g~~~f---~~~pg~t~s~TF-~~pG~y~y~C~   79 (123)
T 3erx_A           20 PAFVRAEPGDVINFVPTDK----S-----HNVEAIKEILPEGVESF---KSKINESYTLTV-TEPGLYGVKCT   79 (123)
T ss_dssp             SSEEEECTTEEEEEEESST----T-----CCCEECTTSSCTTCCCC---BCCTTCCEEEEE-CSCEEEEEECG
T ss_pred             CCEEEECCCCEEEEEECCC----C-----ceEEEcCCcCCCCccce---ecCCCCEEEEEe-CCCeEEEEEeC
Confidence            4679999999988876662    3     44332211112443222   267999887777 67899999993

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}

Probab=98.92  E-value=2.1e-09  Score=73.04  Aligned_cols=72  Identities=21%  Similarity=0.243  Sum_probs=58.0

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc----ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ..|+++.|++++++|.|......+++|+||..+... ..||.+.    .....|.||++++..+. +++|.|++|||.
T Consensus       204 ~~l~v~~G~~vrlrliN~~~~~~~~~~i~g~~~~vi-~~DG~~~~p~~~~~~~l~pg~r~~v~v~~~~~G~y~~~~~~  280 (442)
T 2zoo_A          204 NSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTV-YVEGGSLKNHNVQTTLIPAGGAAIVEFKVEVPGTFILVDHS  280 (442)
T ss_dssp             GCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEE-EGGGSSCEECSBSEEEECTTEEEEEEEECCSCEEEEEEESS
T ss_pred             CceEeCCCCEEEEEEEeCCCCCceeeEEcCCEEEEE-ecCCccCCCccceEEEECCCeeEEEEEEcCCCCeEEEEecc
Confidence            479999999999999997543679999999876643 3677532    22345889999999999 889999999984

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A

Probab=98.91  E-value=4.4e-09  Score=58.63  Aligned_cols=64  Identities=13%  Similarity=0.108  Sum_probs=42.8

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCC-------CCcc--cccccCCCCEEEEEEcCCCeeeEEc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDG-------VPFV--TQCPITQGNTFRYQFTANAGTHFWH   72 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG-------~~~~--~~~~i~pG~~~~y~~~~~~Gt~~YH   72 (75)
                      +..|++++||+|+  |.|... .+|+++++.-   ..  .++       .+..  ....+.||+++++.| +.+|+|+|+
T Consensus        16 P~~i~v~~G~tV~--~~n~~~-~~H~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf-~~~G~y~y~   86 (102)
T 1kdj_A           16 PDSITVSAGEAVE--FTLVGE-TGHNIVFDIP---AG--APGTVASELKAASMDENDLLSEDEPSFKAKV-STPGTYTFY   86 (102)
T ss_dssp             SSEEEECTTCCEE--EEECSS-SCBCCEECCC---TT--CCHHHHHHHHHTSCCTTCCBBTTBCEEEECC-CSCEEEEEE
T ss_pred             CCEEEECCCCEEE--EEECCC-CCeEEEEeCc---cc--ccccccchhhcccccccceecCCCCEEEEEe-CCCeEEEEE
Confidence            4679999999977  458865 6788877631   00  000       0001  123478999888766 889999999


Q ss_pred             cC
Q psy88            73 AH   74 (75)
Q Consensus        73 ~H   74 (75)
                      |+
T Consensus        87 C~   88 (102)
T 1kdj_A           87 CT   88 (102)
T ss_dssp             CS
T ss_pred             eC
Confidence            96

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}

Probab=98.89  E-value=2.7e-09  Score=62.62  Aligned_cols=60  Identities=10%  Similarity=0.080  Sum_probs=38.1

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++.+.|.    +     |++........+|....   .+.||+++++.| +.+|+|+|+|-
T Consensus        22 P~~i~V~~GDtVtf~n~~~----~-----H~v~~~~~~~P~g~~~f---~s~pGet~s~TF-~~pG~y~y~C~   81 (127)
T 3tu6_A           22 PAVIRAQPGDTVTFVAKDK----G-----HNSALMKGGAPEGAETW---KGKINEEITVTL-SKPGVYMYQCA   81 (127)
T ss_dssp             SSEEEECTTCEEEEECSSS----S-----CCCEECTTCSCTTCCCC---BCCTTCCCEEEC-CSCEEEEEECT
T ss_pred             CCEEEECCCCEEEEEECCC----C-----ceEEEccCcCCCCccce---ecCCCCEEEEEe-CCCeEEEEEeC
Confidence            5689999999977665442    3     44433211112332222   257999877777 68899999993

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0

Probab=98.87  E-value=4.8e-09  Score=61.40  Aligned_cols=60  Identities=12%  Similarity=-0.016  Sum_probs=39.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|+++.||+|++.  |..  .+|++..+...     ..+|...   ..+.||+++++.| +.+|+|+|+|-
T Consensus        21 P~~i~V~~GDTV~f~--n~~--~~Hnv~~~~~~-----~p~g~~~---~~~~pg~t~s~TF-~~~G~y~Y~C~   80 (124)
T 3ef4_A           21 PGFVKVEAGDTVKFV--PTD--KSHNAESVREV-----WPEGVAP---VKGGFSKEVVFNA-EKEGLYVLKCA   80 (124)
T ss_dssp             SSEEEECTTCEEEEE--CSS--SSCCCEECTTT-----SCTTSCC---CBCCTTCCEEEEC-CSSEEEEEECT
T ss_pred             CCEEEECCCCEEEEE--ECC--CCccEEEeCCc-----CCCCccc---cccCCCCEEEEEe-CCCeEEEEEcC
Confidence            468999999997655  543  35555544211     1233222   2367999888777 67899999993

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.87  E-value=1.2e-08  Score=59.89  Aligned_cols=62  Identities=13%  Similarity=0.126  Sum_probs=42.8

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|... .+|++++...       .+|........+.||+++++.| +++|+|+|+|-
T Consensus        59 P~~i~V~~GdtV~~--~N~d~-~~H~v~~~~~-------~~g~~~~~s~~l~pG~t~~~tF-~~~G~y~y~C~  120 (132)
T 3c75_A           59 TPEVTIKAGETVYW--VNGEV-MPHNVAFKKG-------IVGEDAFRGEMMTKDQAYAITF-NEAGSYDYFCT  120 (132)
T ss_dssp             SSEEEECTTCEEEE--EECSS-SCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE-CSCEEEEEECS
T ss_pred             CCEEEECCCCEEEE--EECCC-CceEEEEeCC-------CCCcccccccccCCCCEEEEEc-CCCEEEEEEeC
Confidence            46799999999875  48876 6776665321       1222222223478999998877 67899999994

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A

Probab=98.86  E-value=9.3e-09  Score=67.78  Aligned_cols=69  Identities=16%  Similarity=0.074  Sum_probs=49.0

Q ss_pred             ccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      .+|++++|++++|.+.|.... ..+.+|.|++.+.    .||...      .....|.||++.+..+. +++|.||||||
T Consensus       225 ~~l~v~~Ger~Rl~n~~~~~~~~~h~i~~h~~~Vi----~dG~~~~~p~~~~dtv~l~pGer~~v~v~a~~pG~y~~~ch  300 (333)
T 1mzy_A          225 GALKAKVGDNVLFVHSQPNRDSRPHLIGGHGDLVW----ETGKFHNAPERDLETWFIRGGTAGAALYKFLQPGVYAYVNH  300 (333)
T ss_dssp             GCEEEETTCEEEEEEEESSSCBCEEEETCCEEEEE----TTCCTTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEES
T ss_pred             cceEecCCCEEEEEECCCCCccccEEECCCCeEEE----eCCcccCCCccCcceEEECCCceEEEEEEcCCCEEEEEecC
Confidence            459999999999988876431 1233444554432    366431      23456899999999999 88999999999


Q ss_pred             C
Q psy88            75 T   75 (75)
Q Consensus        75 ~   75 (75)
                      .
T Consensus       301 ~  301 (333)
T 1mzy_A          301 N  301 (333)
T ss_dssp             S
T ss_pred             h
Confidence            4

>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...

Probab=98.86  E-value=1.1e-08  Score=67.63  Aligned_cols=70  Identities=16%  Similarity=0.045  Sum_probs=49.8

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ..|++++|++++|.+.|... .....|.||..+...  .||...      .....|.||++++..+. +++|.||+|||.
T Consensus       231 ~~l~v~~G~r~Rl~n~~~~~-~~~~~~i~gh~~~Vi--~dG~~~~~p~~~~dtv~l~pGer~~v~v~~~~pG~y~~~~h~  307 (340)
T 2bw4_A          231 HALTAAVGERVLVVHSQANR-DTRPHLIGGHGDYVW--ATGKFRNPPDLDQETWLIPGGTAGAAFYTFRQPGVYAYVNHN  307 (340)
T ss_dssp             GCEEEETTCEEEEEEEESSS-CBCEEEETCCEEEEE--TTCCTTSCCEEEESCCCBCTTEEEEEEEECCSCEEEEEEESS
T ss_pred             CceEcCCCCEEEEEECCCCC-ccceEEecCcceEEe--CCCcccCCccccceEEEeCCCceEEEEEECCCCeeeEEEcCc
Confidence            67999999999988877654 333333455444322  366431      23456899999999999 889999999994

>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A

Probab=98.82  E-value=3.3e-09  Score=72.70  Aligned_cols=66  Identities=11%  Similarity=0.140  Sum_probs=50.6

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC-------cccccccCCCCEEEEEEc-CCCee----eEE
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP-------FVTQCPITQGNTFRYQFT-ANAGT----HFW   71 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~-------~~~~~~i~pG~~~~y~~~-~~~Gt----~~Y   71 (75)
                      .+.++.|+++++.|.|.   .+|.||+||..+.... .||.+       ...+..|  |++.+..|+ +++|.    |+|
T Consensus       348 ~~~~~~G~~~~~~l~N~---~~HP~HLHGh~F~Vl~-~~G~~~~~~~p~~rDTv~v--g~~~~i~~~~dnpg~~~g~w~~  421 (451)
T 2uxt_A          348 DVTAQQGTWERWTVRAD---EPQAFHIEGVMFQIRN-VNGAMPFPEDRGWKDTVWV--DGQVELLVYFGQPSWAHFPFYF  421 (451)
T ss_dssp             CEEEETTCEEEEEEEEE---EEEEEEETTCEEEEEE-ETTBCCCGGGSSCBSEEEE--EEEEEEEEECCSCCBTTBCEEE
T ss_pred             cEEcCCCCEEEEEEECC---CCcCeEECCceEEEEe-eCCcCCCcccCCCccEEEE--CCEEEEEEEeCCCCCCCCceEE
Confidence            58999999999999997   4899999998876432 35532       1123345  888888998 77777    999


Q ss_pred             ccCC
Q psy88            72 HAHT   75 (75)
Q Consensus        72 H~H~   75 (75)
                      |||.
T Consensus       422 HCHi  425 (451)
T 2uxt_A          422 NSQT  425 (451)
T ss_dssp             EESS
T ss_pred             eCCc
Confidence            9994

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=98.77  E-value=5.9e-08  Score=53.86  Aligned_cols=64  Identities=14%  Similarity=0.125  Sum_probs=43.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc----ccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|... .+|++....-..     .+|...    .....+.||+++++.| +.+|+|+|+|-
T Consensus        17 P~~i~v~~GdtV~~--~n~~~-~~H~v~~~~~~~-----p~g~~~~~~~~~~~~~~~g~~~~~tf-~~~G~y~y~C~   84 (98)
T 1iuz_A           17 PSKISVAAGEAIEF--VNNAG-FPHNIVFDEDAV-----PAGVDADAISYDDYLNSKGETVVRKL-STPGVYGVYCE   84 (98)
T ss_dssp             SSEEEECTTCEEEE--EECSS-CCEEEEECTTSS-----CTTCCHHHHCEEEEECSTTCEEEEEC-CSCEEEEEECT
T ss_pred             CCEEEECCCCEEEE--EECCC-CCEEEEEeCCCC-----ccccccccccccccccCCCCEEEEEc-CCCEEEEEEch
Confidence            46799999999665  58765 677776554211     123211    0112478999888877 78999999994

>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}

Probab=98.75  E-value=1.1e-08  Score=70.07  Aligned_cols=67  Identities=18%  Similarity=0.273  Sum_probs=49.6

Q ss_pred             EE-EecCCEEEEEEEeCC-CCCCceEEeCCccccCCCCCCCCC-------------------cccccccCCCCEEEEE--
Q psy88             5 KN-VCEGDRVVVDVRNSM-DGLENTIHWHGIHQRGTQYSDGVP-------------------FVTQCPITQGNTFRYQ--   61 (75)
Q Consensus         5 i~-~~~Gd~v~i~~~N~~-~~~~~~iH~HG~~~~~~~~~DG~~-------------------~~~~~~i~pG~~~~y~--   61 (75)
                      +. ++.|+.+++.|.|.. . .+|.||+||..+.... .+|..                   ...+..|+||++.+..  
T Consensus       340 ~~~~~~g~~v~~~i~N~~~~-~~HP~HLHG~~F~Vl~-~~G~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vr  417 (448)
T 3aw5_A          340 FEHVSVEGVELWEIVNDKAS-MPHPMHLHGFPMWIIE-RKDSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVN  417 (448)
T ss_dssp             CCCEEECEEEEEEEEECSSS-CCEEEEESSSCBEEEE-EESCCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEE
T ss_pred             eeccCCCCeEEEEEEcCCCC-CCcCEEECCceEEEEE-ecCCCcccccccccccCCCccccCCccEEEeCCCCEEEEEEE
Confidence            45 899999999999998 6 7999999998865432 23321                   1234558899999888  


Q ss_pred             Ec----CCCeeeEEccCC
Q psy88            62 FT----ANAGTHFWHAHT   75 (75)
Q Consensus        62 ~~----~~~Gt~~YH~H~   75 (75)
                      |.    +.+  |+||||.
T Consensus       418 F~~~~adnp--w~~HCHi  433 (448)
T 3aw5_A          418 FDAKKRGQL--FPFHCHN  433 (448)
T ss_dssp             ECGGGTTCE--EEEEESS
T ss_pred             ecccCCCCc--EEEEcCC
Confidence            53    244  9999994

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A

Probab=98.68  E-value=4.5e-08  Score=57.50  Aligned_cols=71  Identities=11%  Similarity=0.023  Sum_probs=44.6

Q ss_pred             cccEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCC--------------------CCCCCCCcccccccCCCCEEEE
Q psy88             2 LYPKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGT--------------------QYSDGVPFVTQCPITQGNTFRY   60 (75)
Q Consensus         2 ~~~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~--------------------~~~DG~~~~~~~~i~pG~~~~y   60 (75)
                      +..|.+++| |+|+|+|+|... .+...=-|++.....                    +..|.........|.||++.++
T Consensus        17 p~~i~V~~G~~~vtv~~~N~g~-~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~sv   95 (129)
T 1cuo_A           17 TRSISVPASCAEFTVNFEHKGH-MPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSV   95 (129)
T ss_dssp             CSEEEEETTCSEEEEEEEECSS-SCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEE
T ss_pred             cCeEEEcCCCeEEEEEEEECCC-CcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCCCEEEE
Confidence            457999999 999999999865 330000133321110                    0011100011234789999999


Q ss_pred             EEc-C---CCeeeEEcc
Q psy88            61 QFT-A---NAGTHFWHA   73 (75)
Q Consensus        61 ~~~-~---~~Gt~~YH~   73 (75)
                      .|. .   ++|+|+|.|
T Consensus        96 tf~~~~~~~~G~Y~f~C  112 (129)
T 1cuo_A           96 KFKVSALSKDEAYTYFC  112 (129)
T ss_dssp             EEEGGGCCTTSCEEEEC
T ss_pred             EEeccccCCCceEEEEe
Confidence            999 7   999999999

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*

Probab=98.68  E-value=6.6e-08  Score=56.27  Aligned_cols=60  Identities=10%  Similarity=0.083  Sum_probs=36.8

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|...  +     |.+........+|....   ...||+++++.| +.+|+|+|+|-
T Consensus        20 P~~i~V~~GdtV~f--~~~~~--~-----H~v~~~~~~~p~~~~~~---~~~pG~t~~~tF-~~~G~y~y~C~   79 (123)
T 1paz_A           20 PAYIKANPGDTVTF--IPVDK--G-----HNVESIKDMIPEGAEKF---KSKINENYVLTV-TQPGAYLVKCT   79 (123)
T ss_dssp             SSEEEECTTCEEEE--EESSS--S-----CCCEECTTCSCTTCCCC---BCCTTCCEEEEC-CSCEEEEEECT
T ss_pred             CCEEEECCCCEEEE--EECCC--C-----eEEEEecccCCCCccce---ecCCCCEEEEEe-CCCEEEEEEeC
Confidence            46799999999765  55532  3     44333211112332222   256899877666 67899999993

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=98.67  E-value=1.4e-07  Score=53.23  Aligned_cols=62  Identities=13%  Similarity=0.119  Sum_probs=40.6

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|+++.||+|++.  |... .+|++......       .|........+.||+++++.| +.+|+|.|+|-
T Consensus        33 P~~i~V~~G~tV~~~--N~d~-~~H~v~~~~~~-------~~~~~~~s~~l~~g~~~~~tf-~~~G~y~~~C~   94 (106)
T 1id2_A           33 TPEVTIKAGETVYWV--NGEV-MPHNVAFKKGI-------VGEDAFRGEMMTKDQAYAITF-NEAGSYDYFCT   94 (106)
T ss_dssp             SSEEEECTTCEEEEE--ECSS-SCBCCEECTTT-------SSSSCEECCCBCTTEEEEEEE-CSCEEEEEECS
T ss_pred             CCEEEECCCCEEEEE--ECCC-CcEEEEEeCCC-------CCcccccccccCCCCEEEEEe-CCCEEEEEEeC
Confidence            467999999998654  8765 55555443211       111111122478999988877 68899999994

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1

Probab=98.65  E-value=6.2e-08  Score=56.38  Aligned_cols=60  Identities=17%  Similarity=0.187  Sum_probs=37.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|+  |.|...  +     |.+........||....   .+.||+++++.| +.+|+|+|+|-
T Consensus        20 P~~i~V~~GdtV~--f~n~~~--~-----H~v~~~~~~~p~~~~~~---~~~pG~t~~~tF-~~~G~y~y~C~   79 (123)
T 1pmy_A           20 PALVRLKPGDSIK--FLPTDK--G-----HNVETIKGMAPDGADYV---KTTVGQEAVVKF-DKEGVYGFKCA   79 (123)
T ss_dssp             SSEEEECTTCEEE--EECSSS--S-----CCCEECTTSSCTTCCCC---BCCTTSCEEEEC-CSCEEEEEECS
T ss_pred             CCEEEECCCCEEE--EEECCC--C-----cEEEEecccCCCCccce---ecCCCCEEEEEe-CCCeEEEEEeC
Confidence            4679999999965  456532  3     44432211112332222   267999877666 67899999993

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A

Probab=98.63  E-value=1.1e-07  Score=55.23  Aligned_cols=60  Identities=13%  Similarity=0.122  Sum_probs=37.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|...  .|++....     ....+|....   .+.||+++++.| +.+|+|+|+|-
T Consensus        20 P~~i~V~~GdtV~f--~n~d~--~H~v~~~~-----~~~p~~~~~~---~~~~g~t~~~tF-~~~G~y~y~C~   79 (122)
T 2ux6_A           20 PASLKVAPGDTVTF--IPTDK--GHNVETIK-----GMIPDGAEAF---KSKINENYKVTF-TAPGVYGVKCT   79 (122)
T ss_dssp             SSEEEECTTEEEEE--EESSS--SCCCEECT-----TCSCTTCCCC---BCCTTCCEEEEE-CSCEEEEEEET
T ss_pred             CCEEEECCCCEEEE--EECCC--CcEEEEcc-----cccCCCccee---ecCCCCEEEEEe-CCCEEEEEEeC
Confidence            45799999998665  56632  44443322     1112332222   357899887777 67899999994

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}

Probab=98.62  E-value=3.9e-08  Score=60.11  Aligned_cols=72  Identities=10%  Similarity=0.033  Sum_probs=45.0

Q ss_pred             cccEEE-ecCCEEEEEEEeCCCCCCceEEeCCccccCC-------------------CCCCCCCcccccccCCCCEEEEE
Q psy88             2 LYPKNV-CEGDRVVVDVRNSMDGLENTIHWHGIHQRGT-------------------QYSDGVPFVTQCPITQGNTFRYQ   61 (75)
Q Consensus         2 ~~~i~~-~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~-------------------~~~DG~~~~~~~~i~pG~~~~y~   61 (75)
                      +..|.| +.||+|+|+|+|... .+..-=-|++.....                   +..|.........|.||+++++.
T Consensus        57 P~~itV~kaG~~Vtv~~~N~g~-~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pGet~svt  135 (167)
T 3ay2_A           57 TKDIQVSKACKEFTITLKHTGT-QPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLT  135 (167)
T ss_dssp             CSEEEEETTCSSEEEEEEECSC-SCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTTCEEEEE
T ss_pred             cceEEEecCCCEEEEEEEECCC-CccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceeeCCCCEEEEE
Confidence            356899 999999999999976 430000133322110                   00011000112347999999999


Q ss_pred             Ec-C--CCeeeEEccC
Q psy88            62 FT-A--NAGTHFWHAH   74 (75)
Q Consensus        62 ~~-~--~~Gt~~YH~H   74 (75)
                      |. .  ++|+|+|+|-
T Consensus       136 f~~~~lkpG~Y~f~Ct  151 (167)
T 3ay2_A          136 LDPAKLADGDYKFACT  151 (167)
T ss_dssp             ECGGGGTTSCEEEECC
T ss_pred             EecCCCCCcEEEEEcC
Confidence            99 6  8999999993

>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...

Probab=98.55  E-value=3e-07  Score=60.54  Aligned_cols=69  Identities=14%  Similarity=0.088  Sum_probs=48.3

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEe-CCccccCCCCCCCCCc------ccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHW-HGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~-HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      ..|.+++|++++|...|...  ...+|. ||..+...  .||...      .....|.||++++..+. +++|.|++|||
T Consensus       225 ~~l~v~~GervRlin~~~~~--~~~~~~i~gh~~~Vi--~DG~~~~p~~~~~dtv~i~pGer~dvlv~~~~pG~y~~~~h  300 (336)
T 1oe1_A          225 NALTAKVGETVLLIHSQANR--DTRPHLIGGHGDWVW--ETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNH  300 (336)
T ss_dssp             GCEEEETTCEEEEEEEESSS--CBCEEETTCCEEEEE--TTCCTTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEES
T ss_pred             cceEcCCCCEEEEEecCCCC--ccceEEECCcCceEe--CCCcCcCCccccceEEEECCCCcEEEEEEcCCCceEEEEec
Confidence            57999999999876555532  334343 45443322  377532      12456899999999999 88999999999


Q ss_pred             C
Q psy88            75 T   75 (75)
Q Consensus        75 ~   75 (75)
                      .
T Consensus       301 ~  301 (336)
T 1oe1_A          301 N  301 (336)
T ss_dssp             S
T ss_pred             h
Confidence            4

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A

Probab=98.52  E-value=8e-07  Score=52.06  Aligned_cols=72  Identities=11%  Similarity=0.043  Sum_probs=44.4

Q ss_pred             cccEEE-ecCCEEEEEEEeCCCCCC-----ceEEe--CCcc-------ccCCCCC-----CCCCcc-cccccCCCCEEEE
Q psy88             2 LYPKNV-CEGDRVVVDVRNSMDGLE-----NTIHW--HGIH-------QRGTQYS-----DGVPFV-TQCPITQGNTFRY   60 (75)
Q Consensus         2 ~~~i~~-~~Gd~v~i~~~N~~~~~~-----~~iH~--HG~~-------~~~~~~~-----DG~~~~-~~~~i~pG~~~~y   60 (75)
                      +..|.+ +.||+|+|+|+|... .+     |.+-+  .+..       +......     |....+ ....|.||++.++
T Consensus        17 p~~i~V~k~G~~vtv~~~N~g~-~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGet~sv   95 (128)
T 1nwp_A           17 TKDIAIDKSCKTFTVELTHSGS-LPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKDSV   95 (128)
T ss_dssp             CSEEEECTTCSEEEEEEEECSS-CCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEEEE
T ss_pred             cCEEEEecCCCEEEEEEEECCC-CcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeCCCCEEEE
Confidence            457899 999999999999875 43     44332  1100       0000000     100001 1224899999999


Q ss_pred             EEc-C--CCee-eEEccC
Q psy88            61 QFT-A--NAGT-HFWHAH   74 (75)
Q Consensus        61 ~~~-~--~~Gt-~~YH~H   74 (75)
                      .|. .  .+|+ |+|.|-
T Consensus        96 tf~~~~l~~G~~Y~f~C~  113 (128)
T 1nwp_A           96 TFDVSKLAAGEKYGFFCS  113 (128)
T ss_dssp             EEEGGGSCTTSCEEEECC
T ss_pred             EEeccccCCCceEEEEEC
Confidence            999 6  7887 999993

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A

Probab=98.50  E-value=8.4e-07  Score=52.00  Aligned_cols=72  Identities=11%  Similarity=0.080  Sum_probs=43.9

Q ss_pred             cccEEE-ecCCEEEEEEEeCCCCCC-----ceEEeC--Cccc-------------cCCCCCCCCCcccccccCCCCEEEE
Q psy88             2 LYPKNV-CEGDRVVVDVRNSMDGLE-----NTIHWH--GIHQ-------------RGTQYSDGVPFVTQCPITQGNTFRY   60 (75)
Q Consensus         2 ~~~i~~-~~Gd~v~i~~~N~~~~~~-----~~iH~H--G~~~-------------~~~~~~DG~~~~~~~~i~pG~~~~y   60 (75)
                      +..|.+ ++||+|+|+|+|... .+     |.+-+=  |...             .-.+..|..-......|.||++.++
T Consensus        17 p~~i~V~k~G~~vtv~~~N~g~-~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~sv   95 (129)
T 2ccw_A           17 VKEIVVDKSCKQFTMHLKHVGK-MAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSV   95 (129)
T ss_dssp             CSEEEECTTCSEEEEEEEECSC-CCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEE
T ss_pred             cceEEEecCCCEEEEEEEECCC-cccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEECCCCEEEE
Confidence            457899 999999999999975 43     433221  1000             0000011100001234799999999


Q ss_pred             EEc-C--CCee-eEEccC
Q psy88            61 QFT-A--NAGT-HFWHAH   74 (75)
Q Consensus        61 ~~~-~--~~Gt-~~YH~H   74 (75)
                      .|. .  .+|. |+|.|-
T Consensus        96 tf~~~~l~~G~~Y~f~C~  113 (129)
T 2ccw_A           96 TFDVSKIAAGENYAYFCS  113 (129)
T ss_dssp             EEEGGGSCTTCCEEEECC
T ss_pred             EEeccccCCCceEEEEeC
Confidence            999 7  7876 999993

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=98.44  E-value=8.1e-07  Score=63.23  Aligned_cols=60  Identities=25%  Similarity=0.385  Sum_probs=44.7

Q ss_pred             cccEEEecCCEEEEEEEeCCC--CCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMD--GLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~--~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++.++|...  ...     ||+..+.    .|..    ..+.||++.++.|. +++|+|+|+|.
T Consensus       557 P~eI~VP~GdtVrfiLTN~D~veDVi-----HSF~IPs----lGIK----~DaiPGrtnsvtFtadkPGvY~y~CS  619 (638)
T 3sbq_A          557 VQEFTVKQGDEVTVTITNIDQIEDVS-----HGFVVVN----HGVS----MEISPQQTSSITFVADKPGLHWYYCS  619 (638)
T ss_dssp             CCEEEEETTCEEEEEEEECCCSTTCC-----EEEEETT----TTEE----EEECTTCEEEEEEECCSCEEEEEECC
T ss_pred             CCEEEEecCceeEEEEecCCcCCCce-----eeeEecC----CCce----eeeCCCCeEEEEEEcCCCEEEEEECC
Confidence            467999999999999999732  134     4443331    1211    23789999999999 99999999995

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*

Probab=98.43  E-value=1.7e-06  Score=50.68  Aligned_cols=72  Identities=11%  Similarity=0.085  Sum_probs=44.5

Q ss_pred             cccEEE-ecCCEEEEEEEeCCCCCC-----ceEEeCCcc---------------ccCCCCCCCCCcccccccCCCCEEEE
Q psy88             2 LYPKNV-CEGDRVVVDVRNSMDGLE-----NTIHWHGIH---------------QRGTQYSDGVPFVTQCPITQGNTFRY   60 (75)
Q Consensus         2 ~~~i~~-~~Gd~v~i~~~N~~~~~~-----~~iH~HG~~---------------~~~~~~~DG~~~~~~~~i~pG~~~~y   60 (75)
                      +..|.+ +.||+|+|+++|... .+     |.+-+=.-.               ..-.+..|..-......|.||+++++
T Consensus        16 p~~i~V~k~G~~vtv~~~N~g~-~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGes~~v   94 (128)
T 2iaa_C           16 TKSIVVDKTCKEFTINLKHTGK-LPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSV   94 (128)
T ss_dssp             CSEEEECTTCSEEEEEEEECSC-SCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEE
T ss_pred             cCEEEEecCCcEEEEEEEECCC-CcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCCCCEEEE
Confidence            457899 999999999999975 44     443321100               00000011100011234799999999


Q ss_pred             EEc-C--CCee-eEEccC
Q psy88            61 QFT-A--NAGT-HFWHAH   74 (75)
Q Consensus        61 ~~~-~--~~Gt-~~YH~H   74 (75)
                      .|. .  .+|+ |+|.|-
T Consensus        95 tf~~~~l~~G~~Y~f~C~  112 (128)
T 2iaa_C           95 TFDVSKLKEGEDYAFFCS  112 (128)
T ss_dssp             EEESSCCCTTCCEEEECC
T ss_pred             EEeccccCCCceEEEEEC
Confidence            999 7  8995 999993

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*

Probab=98.01  E-value=2.2e-05  Score=46.18  Aligned_cols=57  Identities=21%  Similarity=0.385  Sum_probs=42.5

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~   73 (75)
                      +..|+++.|++|++.++|. + ..     |++..+.    .|..    ..+.||+..++.|. +++|+|.|.|
T Consensus        59 P~~l~Vp~G~~V~~~vts~-D-V~-----Hsf~ip~----~~~k----~d~~PG~~~~~~~~~~~~G~y~~~C  116 (135)
T 2cua_A           59 PNPIEVPQGAEIVFKITSP-D-VI-----HGFHVEG----TNIN----VEVLPGEVSTVRYTFKRPGEYRIIC  116 (135)
T ss_dssp             SSSEEEETTSEEEEEEEBS-S-SC-----EEEEETT----SSCE----EEECBTBCEEEEEECCSCEEEEEEC
T ss_pred             CCEEEEcCCCEEEEEEEeC-C-cc-----ceEEecC----CCce----eEeCCCCcEEEEEEcCCCEEEEEEC
Confidence            3578999999999999997 3 34     4443331    1211    23679999999999 9999999999

>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...

Probab=97.99  E-value=6e-05  Score=44.05  Aligned_cols=72  Identities=11%  Similarity=0.097  Sum_probs=42.4

Q ss_pred             cccEEEec-CCEEEEEEEeCCCCCC-----ceEEeC-----------Cccc----cCCCCCCCCCcccccccCCCCEEEE
Q psy88             2 LYPKNVCE-GDRVVVDVRNSMDGLE-----NTIHWH-----------GIHQ----RGTQYSDGVPFVTQCPITQGNTFRY   60 (75)
Q Consensus         2 ~~~i~~~~-Gd~v~i~~~N~~~~~~-----~~iH~H-----------G~~~----~~~~~~DG~~~~~~~~i~pG~~~~y   60 (75)
                      +-.|.|++ |++|+|+|+|... .+     |.+=+=           |+..    .-.+..|.........|.||++.+.
T Consensus        17 p~~i~V~~~Ge~V~~~l~N~G~-~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~v   95 (125)
T 3fsa_A           17 TNAITVDKSCKQFTVNLSHPGN-LPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSV   95 (125)
T ss_dssp             CSEEEECTTCSEEEEEEECCSS-CCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEE
T ss_pred             cCEEEEecCCCEEEEEEEECCc-ccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEE
Confidence            35689976 9999999999985 43     332210           0000    0000011111112334799999999


Q ss_pred             EEc-C---CCeeeEEccC
Q psy88            61 QFT-A---NAGTHFWHAH   74 (75)
Q Consensus        61 ~~~-~---~~Gt~~YH~H   74 (75)
                      .|. .   .+|+|.|.|-
T Consensus        96 tf~~~~l~~~G~y~f~C~  113 (125)
T 3fsa_A           96 TFDVSKLKEGEQYMFFCA  113 (125)
T ss_dssp             EEEGGGC---CCEEEECS
T ss_pred             EEeCcCcCCCccEEEEcC
Confidence            999 6   8999999993

>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...

Probab=97.73  E-value=0.00013  Score=44.53  Aligned_cols=58  Identities=22%  Similarity=0.409  Sum_probs=43.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|+++.|++|++.++|. + ..     |++..+..    |.    ..-+.||+..+..|. +++|+|++.|.
T Consensus        92 Pn~l~VP~G~~Vr~~vTS~-D-Vi-----Hsf~IP~l----gi----k~da~PG~~n~~~~~~~kpG~y~g~Cs  150 (168)
T 3s8f_B           92 PNPIEVPQGAEIVFKITSP-D-VI-----HGFHVEGT----NI----NVEVLPGEVSTVRYTFKRPGEYRIICN  150 (168)
T ss_dssp             SSSEEEETTSEEEEEEECS-S-SC-----EEEEETTS----SC----EEEECTTBCEEEEEECCSCEEEEEECC
T ss_pred             cCEEEEeCCCeEEEEEecC-C-ce-----EEEEECCC----Ce----EEEecCCceeEEEEEeCCCEEEEEECC
Confidence            3578999999999999997 4 34     44433321    11    112679999999999 99999999994

>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A

Probab=93.99  E-value=0.21  Score=31.19  Aligned_cols=57  Identities=16%  Similarity=0.058  Sum_probs=41.9

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      ..|++..|+.|++.+++..  .-     ||+..+..    |+    +.-+-||..-...|. +++|+|+..|-
T Consensus        41 n~l~lP~g~~V~~~lTS~D--Vi-----HSF~IP~l----gv----K~daiPGr~n~l~~~~~~pG~y~g~Cs   98 (205)
T 1cyx_A           41 NEIAFPANTPVYFKVTSNS--VM-----HSFFIPRL----GS----QIYAMAGMQTRLHLIANEPGTYDGICA   98 (205)
T ss_dssp             SEEEEETTSCEEEEEEESS--SC-----EEEEEGGG----TE----EEEECTTCCEEEEECCSSSEEEEEEEC
T ss_pred             ceEEEeCCCEEEEEEecCC--ce-----eeEEeccc----Cc----EEEecCCceEEEEEEeCCCeEEEEEcc
Confidence            3588999999999999873  22     55544421    11    223668999999999 99999999883

>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...

Probab=93.00  E-value=0.4  Score=26.77  Aligned_cols=59  Identities=19%  Similarity=0.121  Sum_probs=37.4

Q ss_pred             cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .|++++| +++++.+.|..+ +|..+=.|=.++..++  ..|     |    .|.-+...+.||++++.++.
T Consensus        12 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~r~V~LV   82 (101)
T 4ep8_B           12 QIALNTGRATCRVVVENHGD-RPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELV   82 (101)
T ss_dssp             EEECSTTCCEEEEEEEECSS-SCEEEETTSCGGGSCTTEESCTTTTTTEEECSSTTCEEEECTTCEEEEEEE
T ss_pred             cEEEcCCCCEEEEEEEeCCC-cceEEccccChhHcCcceeecHhhccCceecccCCCeEeeCCCCeEEEEEE
Confidence            5677777 789999999999 8876633333322211  111     1    12223455889999999887

>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*

Probab=92.22  E-value=0.58  Score=30.06  Aligned_cols=57  Identities=21%  Similarity=0.195  Sum_probs=41.2

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      ..|++..|+.|++.+++..  .-     ||...+..    |+    ..-+-||+.-...|. +++|+|...|-
T Consensus       171 n~l~lP~g~~v~~~~tS~D--Vi-----Hsf~ip~l----~~----k~da~PG~~n~~~~~~~~~G~y~g~Cs  228 (262)
T 2gsm_B          171 TAMVVPVNKTVVVQVTGAD--VI-----HSWTVPAF----GV----KQDAVPGRLAQLWFRAEREGIFFGQCS  228 (262)
T ss_dssp             SCEEEETTSEEEEEEEESS--SC-----EEEEEGGG----TE----EEEECBTCCEEEEEECCSCEEEEECCC
T ss_pred             ceEEEecCCEEEEEEEECc--cc-----ceeeeccc----Cc----eEEecCCceeEEEEecCCcEEEEEECh
Confidence            3689999999999999874  23     45444321    11    112568998888999 99999999884

>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*

Probab=91.94  E-value=0.38  Score=27.90  Aligned_cols=59  Identities=19%  Similarity=0.250  Sum_probs=37.5

Q ss_pred             cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .|++++| ++++|.+.|..+ +|..+=.|=.++..++  ..|     |    .|.-+...+.||++++.++.
T Consensus        18 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV   88 (126)
T 4ac7_B           18 EIEINAGREKTTIRVSNTGD-RPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELT   88 (126)
T ss_dssp             EEETTTTSCEEEEEEEECSS-SCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred             CEEeCCCCcEEEEEEEeCCC-CCEEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeEEEEEE
Confidence            5777777 689999999999 8877633332222211  111     1    12223455889999999887

>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*

Probab=91.94  E-value=0.38  Score=27.90  Aligned_cols=59  Identities=19%  Similarity=0.250  Sum_probs=37.5

Q ss_pred             cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .|++++| ++++|.+.|..+ +|..+=.|=.++..++  ..|     |    .|.-+...+.||++++.++.
T Consensus        18 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV   88 (126)
T 4ubp_B           18 EIEINAGREKTTIRVSNTGD-RPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELT   88 (126)
T ss_dssp             EEETTTTSCEEEEEEEECSS-SCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred             CEEeCCCCcEEEEEEEeCCC-CCEEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeEEEEEE
Confidence            5777777 689999999999 8877633332222211  111     1    12223455889999999887

>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*

Probab=91.27  E-value=0.94  Score=29.73  Aligned_cols=57  Identities=21%  Similarity=0.249  Sum_probs=41.1

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      ..|.+..|+.|++.+++..  .-     |+...+..    |.    ..-+-||..-...|. +++|+|...|-
T Consensus       189 N~lvlP~g~~V~~~ltS~D--Vi-----Hsf~iP~l----g~----k~daiPG~~n~~~~~~~~~G~y~g~Cs  246 (298)
T 3hb3_B          189 NPVVVPVGKKVLVQVTATD--VI-----HAWTIPAF----AV----KQDAVPGRIAQLWFSVDQEGVYFGQCS  246 (298)
T ss_dssp             SCEEEESSSEEEEEEEESS--SC-----EEEEEGGG----TE----EEEECTTCCEEEEEECSSSEEEEECCC
T ss_pred             ceEEEEcCCEEEEEEEeCC--cc-----ceeeEccc----Cc----eEEecCCceEEEEEEeCCCEEEEEEcc
Confidence            4689999999999999964  23     44444321    11    122568998888999 99999999884

>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...

Probab=88.95  E-value=1.8  Score=27.20  Aligned_cols=57  Identities=9%  Similarity=0.026  Sum_probs=40.1

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      ..+.+..|+.|++.++...  .-     |+...+..    |   + ..-.-||+.-...|. +++|+|...|-
T Consensus       140 n~lvlP~~~~Vr~~vtS~D--Vi-----Hsf~vP~l----g---~-K~DaiPGr~n~~~~~~~~~G~y~g~Cs  197 (227)
T 1v54_B          140 NRVVLPMEMTIRMLVSSED--VL-----HSWAVPSL----G---L-KTDAIPGRLNQTTLMSSRPGLYYGQCS  197 (227)
T ss_dssp             SCEEEETTSCEEEEEEESS--SC-----EEEEEGGG----T---E-EEEECTTCCEEEEECCSSCEEEEECCC
T ss_pred             ceEEEecCCEEEEEEEeCc--cc-----ceeeeccc----C---c-EEEecCCceEEEEEecCCcEEEEEEeh
Confidence            4688899999999999863  33     44433321    1   1 112567888888999 99999999884

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}

Probab=88.39  E-value=2.3  Score=24.29  Aligned_cols=63  Identities=14%  Similarity=0.216  Sum_probs=37.5

Q ss_pred             cCCE--EEEEEEeCCCCCCceEEeCC-cccc--C--------CCCCCCCCc---ccccccCCCCEEEEEEc-C---CCee
Q psy88             9 EGDR--VVVDVRNSMDGLENTIHWHG-IHQR--G--------TQYSDGVPF---VTQCPITQGNTFRYQFT-A---NAGT   68 (75)
Q Consensus         9 ~Gd~--v~i~~~N~~~~~~~~iH~HG-~~~~--~--------~~~~DG~~~---~~~~~i~pG~~~~y~~~-~---~~Gt   68 (75)
                      .|+.  +.++++|..+ .+..+.+.- ..+.  .        -.|+||-..   .....++||++.+|... +   .||+
T Consensus        16 ~g~~v~~~ltv~N~s~-~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~   94 (120)
T 3isy_A           16 EPEQIKFNMSLKNQSE-RAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGT   94 (120)
T ss_dssp             CSSCEEEEEEEEECSS-SCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEE
T ss_pred             CCCeEEEEEEEEcCCC-CcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCcc
Confidence            4554  4556679887 676665433 2211  0        013454322   23455899999999988 4   5898


Q ss_pred             eEEc
Q psy88            69 HFWH   72 (75)
Q Consensus        69 ~~YH   72 (75)
                      |...
T Consensus        95 Ytl~   98 (120)
T 3isy_A           95 YEVK   98 (120)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8654

>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A

Probab=88.00  E-value=1.8  Score=29.73  Aligned_cols=14  Identities=14%  Similarity=0.086  Sum_probs=12.6

Q ss_pred             cccCCCCEEEEEEc
Q psy88            50 CPITQGNTFRYQFT   63 (75)
Q Consensus        50 ~~i~pG~~~~y~~~   63 (75)
                      .||+|||+++.+..
T Consensus       352 ~pI~PGETrt~~V~  365 (419)
T 3rfr_A          352 DVIAPGESKEIVVK  365 (419)
T ss_dssp             CCBCTTCEEEEEEE
T ss_pred             CCcCCCcceEEEEE
Confidence            39999999999887

>3qga_A UREA2, fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, hydrolase; HET: FME KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A*

Probab=86.70  E-value=1.2  Score=28.23  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=37.4

Q ss_pred             cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .|++++| +++++.+.|..+ +|..+=.|=.++..++  ..|     |    .|.-+...+.||++++.++.
T Consensus       117 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV  187 (225)
T 3qga_A          117 DIELNAGKEITELKVTNKGP-KSLHVGSHFHFFEANRALEFDREKAYGKRLDIPSGNTLRIGAGETKTVHLI  187 (225)
T ss_dssp             CEETTTTCCCEEEEEEECSS-SCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred             ceecCCCCceEEEEEEECCC-CceeeccccchhhcCchhhccHHHhCCcccccCCCCeEeeCCCCeeEEEEE
Confidence            4777777 689999999999 8877633332322211  111     1    12223455889999999887

>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A

Probab=85.82  E-value=2  Score=29.15  Aligned_cols=16  Identities=25%  Similarity=0.430  Sum_probs=13.7

Q ss_pred             cccccCCCCEEEEEEc
Q psy88            48 TQCPITQGNTFRYQFT   63 (75)
Q Consensus        48 ~~~~i~pG~~~~y~~~   63 (75)
                      ...||+|||+++.+..
T Consensus       318 d~~pI~PGETr~~~v~  333 (382)
T 1yew_A          318 DNSPLAPGETRTVDVT  333 (382)
T ss_dssp             CCSCBCTTCEEEEEEE
T ss_pred             CCCCcCCCceeEEEEE
Confidence            3668999999999876

>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A

Probab=85.48  E-value=3.1  Score=23.59  Aligned_cols=57  Identities=16%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             EEEecCCEEEEEEE---eCCCCCCc--eEE--eCCccccC-CCCCCCCCcccccccCCCCEEEEEEc
Q psy88             5 KNVCEGDRVVVDVR---NSMDGLEN--TIH--WHGIHQRG-TQYSDGVPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         5 i~~~~Gd~v~i~~~---N~~~~~~~--~iH--~HG~~~~~-~~~~DG~~~~~~~~i~pG~~~~y~~~   63 (75)
                      =.+++|+.+.|.+.   |... ...  .++  .-|+..+- ....|+=.+ ..||+.+|+.++|.+.
T Consensus        27 C~l~rG~~~~i~~~f~~~~~~-~~l~~~v~~~~~g~~ip~p~~~~daC~~-~~CPl~~G~~~~y~~~   91 (129)
T 1xwv_A           27 CIIHRGKPFTLEALFDANQNT-KTAKIEIKASLDGLEIDVPGIDTNACHF-MKCPLVKGQQYDAKYT   91 (129)
T ss_dssp             EEEETTSEEEEEEEEECCSCB-SCCEEEEEEEETTEEECCCSCCCBGGGT-SCSSBCTTCEEEEEEE
T ss_pred             CEEeCCCeEEEEEEEECCCcc-ceEEEEEEEEEcCEEeecCCCCCCccCC-ccCcccCCEEEEEEEE
Confidence            36788998888877   2211 222  222  23443331 112343222 5899999999999965

>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*

Probab=82.88  E-value=3.7  Score=23.29  Aligned_cols=58  Identities=26%  Similarity=0.370  Sum_probs=33.2

Q ss_pred             EEEecCCEEEEEEE---eCCCCCCceEEeC----Ccccc-CCCCCCCCCcccccccCCCCEEEEEEc
Q psy88             5 KNVCEGDRVVVDVR---NSMDGLENTIHWH----GIHQR-GTQYSDGVPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         5 i~~~~Gd~v~i~~~---N~~~~~~~~iH~H----G~~~~-~~~~~DG~~~~~~~~i~pG~~~~y~~~   63 (75)
                      =.+++|..+.|.+.   |... .......+    |+..+ ..+..|+=.....||+.+|+.++|...
T Consensus        28 C~l~rG~~~~i~i~f~~~~~~-~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~   93 (130)
T 1nep_A           28 CKLHRGQSYSVNVTFTSNTQS-QSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNK   93 (130)
T ss_dssp             EEEETTCEEEEEEEEEESSCB-SCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEE
T ss_pred             CEEEcCCeEEEEEEEEccccc-ceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEE
Confidence            35788998888877   2222 22222333    33332 112234422224899999999999866

>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*

Probab=82.51  E-value=0.52  Score=27.52  Aligned_cols=18  Identities=22%  Similarity=0.268  Sum_probs=16.0

Q ss_pred             cEEEecCCEEEEEEEeCC
Q psy88             4 PKNVCEGDRVVVDVRNSM   21 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~   21 (75)
                      -|.++.|++|++.+.|+.
T Consensus        72 ~InV~~GETVrF~v~nkt   89 (131)
T 2wtp_A           72 YVNVDSGETVAFRAGEKI   89 (131)
T ss_dssp             EEEEETTCEEEEEETTEE
T ss_pred             EEEecCCCEEEEEeCCcE
Confidence            489999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1hfua1	131	b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprin	9e-18
d1v10a1	136	b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [T	5e-16
d1gyca1	130	b.6.1.3 (A:1-130) Laccase {Trametes versicolor, la	8e-16
d1aoza1	129	b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cuc	2e-12
d2j5wa1	192	b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapie	6e-11
d1oe2a1	159	b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcalige	3e-10
d2j5wa3	207	b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sap	9e-10
d1kbva1	151	b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisser	2e-09
d1sdda1	180	b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos t	2e-09
d2q9oa1	162	b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces	3e-09
d1mzya1	153	b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodoba	7e-09
d1e30a_	153	b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidan	3e-08
d1gska1	181	b.6.1.3 (A:2-182) Spore coat protein A, CotA {Baci	3e-08
d2bw4a1	157	b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcalige	4e-08
d1kv7a1	140	b.6.1.3 (A:31-170) multi-copper oxidase CueO {Esch	3e-07
d2j5wa4	179	b.6.1.3 (A:706-884) Ceruloplasmin {Human (Homo sap	4e-07
d1sddb2	139	b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (B	2e-06
d2j5wa5	149	b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sa	3e-06
d2j5wa2	145	b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sap	9e-06
d1sdda2	116	b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos	1e-04
d1kcwa2	146	b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sap	3e-04

>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Length = 131

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

 Score = 69.3 bits (169), Expect = 9e-18
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 6/76 (7%)

Query: 6   NVCEGDRVVVDVRNSMDGLEN----TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
              + D   ++V N +D        +IHWHG+ QRGT ++DG   V QCPI+ G+ F Y+
Sbjct: 37  RGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYK 96

Query: 62  FTA--NAGTHFWHAHT 75
           FT   +AGT ++H+H 
Sbjct: 97  FTPAGHAGTFWYHSHF 112

>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId: 219653]} Length = 136

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Rigidoporus lignosus [TaxId: 219653]

 Score = 65.0 bits (158), Expect = 5e-16
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 6   NVCEGDRVVVDVRNSMDGLEN----TIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
                DR  ++V + +         +IHWHG  Q GT   DG  FV QCPI    +F Y 
Sbjct: 37  TGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYD 96

Query: 62  FTA--NAGTHFWHAHT 75
           F     AGT+++H+H 
Sbjct: 97  FVVPGQAGTYWYHSHL 112

>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Length = 130

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

 Score = 64.3 bits (156), Expect = 8e-16
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)

Query: 6   NVCEGDRVVVDVRNSMDGLE----NTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
              +GDR  ++V +++         +IHWHG  Q GT ++DG  FV QCPI  G++F Y 
Sbjct: 37  TGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYD 96

Query: 62  FTA--NAGTHFWHAHT 75
           F     AGT ++H+H 
Sbjct: 97  FHVPDQAGTFWYHSHL 112

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Length = 129

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

 Score = 55.9 bits (134), Expect = 2e-12
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 6   NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
               GD VVV++ N +      IHWHGI QRGT ++DG   ++QC I  G TF Y FT +
Sbjct: 37  RANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVD 96

Query: 66  -AGTHFWHAHT 75
             GT F+H H 
Sbjct: 97  NPGTFFYHGHL 107

>d2j5wa1 b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 6e-11
 Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 18/87 (20%)

Query: 6   NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQ----YSDGVP--FVTQCPITQGNTFR 59
               GD+V V ++N         H HGI          Y D           +  G  + 
Sbjct: 79  KAETGDKVYVHLKNLASRPYT-FHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYT 137

Query: 60  YQFTA-----------NAGTHFWHAHT 75
           Y   A           N  T  +H+H 
Sbjct: 138 YMLLATEEQSPGEGDGNCVTRIYHSHI 164

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Length = 159

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

 Score = 50.9 bits (121), Expect = 3e-10
 Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 7/70 (10%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
           V EGD V + + N           H +   G      +       +  G     +F A  
Sbjct: 69  VHEGDYVQLTLVNPA----TNAMPHNVEFHGAT--GALGGAKLTNVNPGEQATLRFKADR 122

Query: 66  AGTHFWHAHT 75
           +GT  +H   
Sbjct: 123 SGTFVYHCAP 132

>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Length = 207

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 9e-10
 Identities = 10/90 (11%), Positives = 20/90 (22%), Gaps = 22/90 (24%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQ----------RGTQYSDGVPFVTQCPITQGN 56
              GD + V   N       +I   G+                        +   +    
Sbjct: 90  AEVGDTIRVTFHNKGAY-PLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVPPSASHVAPTE 148

Query: 57  TFRYQFTA-----------NAGTHFWHAHT 75
           TF Y++T                  +++  
Sbjct: 149 TFTYEWTVPKEVGPTNADPVCLAKMYYSAV 178

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Length = 151

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

 Score = 48.5 bits (115), Expect = 2e-09
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 7/71 (9%)

Query: 6   NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN 65
            V EGD V V+  N+      +   H +         G           G T  + F A 
Sbjct: 61  RVREGDTVEVEFSNNPS----STVPHNVDFHAATGQGGGA--AATFTAPGRTSTFSFKAL 114

Query: 66  -AGTHFWHAHT 75
             G + +H   
Sbjct: 115 QPGLYIYHCAV 125

>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Length = 180

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (115), Expect = 2e-09
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 18/86 (20%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQ----YSDGVPFVTQC--PITQGNTFRY 60
              GD + V  +N       +IH  GI          YSD    + +    +  G  + Y
Sbjct: 64  AEVGDIMKVHFKNKAHK-PLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTY 122

Query: 61  QFTA-----------NAGTHFWHAHT 75
           ++                TH ++++ 
Sbjct: 123 EWIISEHSGPTHDDPPCLTHIYYSYV 148

>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]} Length = 162

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

 Score = 48.2 bits (114), Expect = 3e-09
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 6   NVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA- 64
               GD V V V N++     +IHWHGIHQ+ T   DG   VT+CPI      R      
Sbjct: 70  VANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRA 129

Query: 65  -NAGTHFWHAHT 75
              GT ++H+H 
Sbjct: 130 RQYGTSWYHSHF 141

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Length = 153

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 46.7 bits (110), Expect = 7e-09
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 7/70 (10%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
           V EGD V + + N  +        H I       + G   +T   I  G     +F A  
Sbjct: 66  VHEGDYVELTLINPPE----NTMPHNIDFHAATGALGGGGLT--LINPGEKVVLRFKATR 119

Query: 66  AGTHFWHAHT 75
           AG   +H   
Sbjct: 120 AGAFVYHCAP 129

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Length = 153

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

 Score = 45.6 bits (107), Expect = 3e-08
 Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 12/78 (15%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQY-------SDGVPFVTQCPITQGNTFR 59
           +  G  V V   N+  G     H   I ++G  Y                     G    
Sbjct: 64  IPAGATVDVTFINTNKGF---GHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGY 120

Query: 60  YQFTA--NAGTHFWHAHT 75
             FT    AGT+++    
Sbjct: 121 TNFTWHPTAGTYYYVCQI 138

>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]} Length = 181

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Spore coat protein A, CotA
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.6 bits (107), Expect = 3e-08
 Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 26/96 (27%)

Query: 6   NVCEGDRVVVDVRNSM---------------------DGLENTIHWHGIHQRGTQYSDGV 44
            V   + V V   N++                       ++  +H HG            
Sbjct: 60  EVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPDDSDGYPE 119

Query: 45  PFVTQCPITQG---NTFRYQFTAN--AGTHFWHAHT 75
            + ++     G       Y +         ++H H 
Sbjct: 120 AWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHA 155

>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Length = 157

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

 Score = 45.1 bits (106), Expect = 4e-08
 Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 7/70 (10%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
           V E D V + + N           H I          +       +  G     +F A  
Sbjct: 68  VHENDYVELRLINPDT----NTLLHNIDFHAAT--GALGGGALTQVNPGEETTLRFKATK 121

Query: 66  AGTHFWHAHT 75
            G   +H   
Sbjct: 122 PGVFVYHCAP 131

>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]} Length = 140

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: multi-copper oxidase CueO
species: Escherichia coli [TaxId: 562]

 Score = 42.4 bits (99), Expect = 3e-07
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTAN- 65
           +  G  V VD+ N +   E T+HWHG+   G    DG P   Q  I  G         + 
Sbjct: 50  LQRGKAVTVDIYNQLT-EETTLHWHGLEVPGEV--DGGP---QGIIPPGGKRSVTLNVDQ 103

Query: 66  -AGTHFWHAHT 75
            A T ++H H 
Sbjct: 104 PAATCWFHPHQ 114

>d2j5wa4 b.6.1.3 (A:706-884) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 4e-07
 Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 21/80 (26%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-- 64
              GD+V +  +N       +IH HG+    +         T  P   G T  Y +    
Sbjct: 90  ADVGDKVKIIFKNMAT-RPYSIHAHGVQTESS---------TVTPTLPGETLTYVWKIPE 139

Query: 65  ---------NAGTHFWHAHT 75
                          +++  
Sbjct: 140 RSGAGTEDSACIPWAYYSTV 159

>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Length = 139

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (93), Expect = 2e-06
 Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 2/75 (2%)

Query: 2   LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQ 61
           L    + E + V + + N + G  +    H   Q   +       +   P+  G+    +
Sbjct: 51  LPGLRMYEQEWVRLHLLN-LGGSRDIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLE 109

Query: 62  FTA-NAGTHFWHAHT 75
             A   G        
Sbjct: 110 MKASKPGWWLLDTEV 124

>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 3e-06
 Identities = 11/70 (15%), Positives = 16/70 (22%), Gaps = 2/70 (2%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
           +  GD V   +    +   +    H           GV       I  G     +     
Sbjct: 64  MHVGDEVNWYLMGMGN-EIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQTLEMFPRT 122

Query: 66  AGTHFWHAHT 75
            G    H H 
Sbjct: 123 PGIWLLHCHV 132

>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Length = 145

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 9e-06
 Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 5/70 (7%)

Query: 7   VCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTA-N 65
           +C+GD VV  + ++     N    HGI+  G  Y           +    +         
Sbjct: 63  MCKGDSVVWYLFSAG----NEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDT 118

Query: 66  AGTHFWHAHT 75
            GT      T
Sbjct: 119 EGTFNVECLT 128

>d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]} Length = 116

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.1 bits (80), Expect = 1e-04
 Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 5/76 (6%)

Query: 1   MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRY 60
            +    VC  D +   +        +      IH  G         ++   +    +   
Sbjct: 33  TMPDITVCAHDHISWHLIGMS----SGPELFSIHFNGQVLEQNHHKISAITLVSATSTTA 88

Query: 61  QFTA-NAGTHFWHAHT 75
             T    G     +  
Sbjct: 89  NMTVSPEGRWTIASLI 104

>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 3e-04
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 5/73 (6%)

Query: 4   PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT 63
             ++C  DRV   +        N +  H     G   ++    +    +     F     
Sbjct: 61  GLSMCAEDRVKWYLFGMG----NEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMV 116

Query: 64  A-NAGTHFWHAHT 75
           A N G        
Sbjct: 117 AQNPGEWMLSCQN 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1v10a1	136	Laccase {Rigidoporus lignosus [TaxId: 219653]}	99.97
d1hfua1	131	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	99.97
d1aoza1	129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	99.96
d1gyca1	130	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	99.96
d1kv7a1	140	multi-copper oxidase CueO {Escherichia coli [TaxId	99.94
d2q9oa1	162	Laccase {Melanocarpus albomyces [TaxId: 204285]}	99.93
d1sdda1	180	Coagulation factor V {Cow (Bos taurus) [TaxId: 991	99.91
d2j5wa3	207	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2bw4a1	157	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	99.9
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	99.9
d2j5wa1	192	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2j5wa4	179	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	99.88
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	99.87
d1gska1	181	Spore coat protein A, CotA {Bacillus subtilis [Tax	99.87
d1kbva2	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	99.78
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	99.78
d1sddb2	139	Coagulation factor V {Cow (Bos taurus) [TaxId: 991	99.78
d2j5wa5	149	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2j5wa2	145	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1kcwa2	146	Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1sdda2	116	Coagulation factor V {Cow (Bos taurus) [TaxId: 991	99.67
d1ibya_	112	Red copper protein nitrosocyanin {Nitrosomonas eur	99.61
d1fwxa1	132	Nitrous oxide reductase, C-terminal domain {Paraco	99.58
d2bw4a2	173	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	99.35
d1aoza3	214	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	99.3
d1kv7a3	181	multi-copper oxidase CueO {Escherichia coli [TaxId	99.28
d1hfua3	200	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	99.25
d1gska3	154	Spore coat protein A, CotA {Bacillus subtilis [Tax	99.23
d1oe1a2	177	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	99.23
d1qnia1	131	Nitrous oxide reductase, C-terminal domain {Pseudo	99.23
d1v10a3	190	Laccase {Rigidoporus lignosus [TaxId: 219653]}	99.14
d1qhqa_	139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	99.12
d1gyca3	199	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	99.1
d1sddb1	67	Coagulation factor V {Cow (Bos taurus) [TaxId: 991	98.96
d2q9oa3	216	Laccase {Melanocarpus albomyces [TaxId: 204285]}	98.85
d2plta_	98	Plastocyanin {Green alga (Chlamydomonas reinhardti	98.67
d2ov0a1	105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	98.64
d2q5ba1	105	Plastocyanin {Cyanobacterium (Phormidium laminosum	98.56
d1pcsa_	98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.56
d1plca_	99	Plastocyanin {Poplar (Populus nigra), variant ital	98.51
d1bypa_	99	Plastocyanin {White campion (Silene pratensis) [Ta	98.46
d1v10a2	168	Laccase {Rigidoporus lignosus [TaxId: 219653]}	98.37
d1bxua_	91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.36
d2q9oa2	181	Laccase {Melanocarpus albomyces [TaxId: 204285]}	98.31
d1kdja_	102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	98.31
d2jxma1	97	Plastocyanin {Photosynthetic prokaryote (Prochloro	98.28
d1gyca2	170	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	98.28
d2cj3a1	105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	98.27
d1hfua2	172	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	98.27
d2cuaa_	122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	98.26
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	98.23
d1aoza2	209	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	98.23
d2ccwa1	129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	98.22
d1iuza_	98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	98.19
d1cuoa_	129	Azurin {Methylomonas sp. j [TaxId: 32038]}	98.06
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	98.02
d1nwpa_	128	Azurin {Pseudomonas putida [TaxId: 303]}	98.01
d1jzga_	128	Azurin {Pseudomonas aeruginosa [TaxId: 287]}	98.01
d1mzya2	178	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	97.87
d1paza_	120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	97.86
d1bqka_	124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	97.78
d1adwa_	123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	97.74
d1kv7a2	165	multi-copper oxidase CueO {Escherichia coli [TaxId	95.84
d1gska2	174	Spore coat protein A, CotA {Bacillus subtilis [Tax	95.7
d1cyxa_	158	Quinol oxidase (CyoA) {Escherichia coli [TaxId: 56	94.2
d1ejxb_	101	Urease, beta-subunit {Klebsiella aerogenes [TaxId:	91.88
d2nqda1	108	Chagasin {Trypanosoma cruzi [TaxId: 5693]}	89.63
d4ubpb_	122	Urease, beta-subunit {Bacillus pasteurii [TaxId: 1	89.45
d1xvsa_	124	ApaG {Vibrio cholerae [TaxId: 666]}	85.71
d1nepa_	130	Epididymal secretory protein E1 (Niemann-Pick C2 p	85.4
d1e9ya1	133	Urease, beta-subunit {Helicobacter pylori [TaxId:	84.97
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	83.27
d1xwva_	129	Major mite allergen {House-dust mite (Dermatophago	82.38
d1tzaa_	132	ApaG {Shewanella oneidensis [TaxId: 70863]}	82.33
d2vzsa2	122	Exochitosanase CsxA, domains 2, 4 and 5 {Amycolato	80.07

>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId: 219653]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Rigidoporus lignosus [TaxId: 219653]

Probab=99.97  E-value=2.4e-31  Score=157.56  Aligned_cols=75  Identities=36%  Similarity=0.667  Sum_probs=68.8

Q ss_pred             CcccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH   74 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H   74 (75)
                      ++++||+++||+|+|+|+|+++.    ++++|||||+.+...++.||+++++||+|+||++++|+|+  +++||||||||
T Consensus        32 PGP~i~~~~GD~v~v~~~N~l~~~~~~~~tsiH~HGl~~~~~~~~dgv~~~t~~~I~PG~~~~Y~~~~~~~~Gt~wYH~H  111 (136)
T d1v10a1          32 IAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSH  111 (136)
T ss_dssp             SCCCEEEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTEEEEEEEECTTCCEEEEEEEC
T ss_pred             cCCeEEEECCcEEEEEEEeCCCCcccCcceeEEecccccccccccCCCCccccceECCCCeEEEEEECCCCccceEEecC
Confidence            46899999999999999998752    5899999999998888899999999999999999999998  67999999999


Q ss_pred             C
Q psy88            75 T   75 (75)
Q Consensus        75 ~   75 (75)
                      +
T Consensus       112 ~  112 (136)
T d1v10a1         112 L  112 (136)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=99.97  E-value=5.3e-31  Score=155.20  Aligned_cols=75  Identities=40%  Similarity=0.736  Sum_probs=68.5

Q ss_pred             CcccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH   74 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H   74 (75)
                      ++++||+++||+|+|+|+|+++.    .+++|||||+.+....+.||++++++|+|.||++|+|+|+  +++||||||||
T Consensus        32 pGP~I~v~~GD~v~v~l~N~l~~~~~~~~tsiH~HGl~~~~~~~~dgv~g~~~~~I~PG~~~~y~~~~~~~~Gt~wYH~H  111 (131)
T d1hfua1          32 HGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSH  111 (131)
T ss_dssp             SSCEEEEETTCCEEEEEEECCCCTTSCCSBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEECCTTCCEEEEEEEC
T ss_pred             CCCeEEEECCCEEEEEEEECCCCccccccceEEeCCcccCCCCCCCCCcccccceECCCCeEEEEEeCCCCcceEEEecC
Confidence            36789999999999999999873    3589999999988778899999999999999999999999  78999999999


Q ss_pred             C
Q psy88            75 T   75 (75)
Q Consensus        75 ~   75 (75)
                      +
T Consensus       112 ~  112 (131)
T d1hfua1         112 F  112 (131)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=99.96  E-value=5e-30  Score=150.37  Aligned_cols=75  Identities=44%  Similarity=0.764  Sum_probs=69.8

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++|++++||+|+|+|+|+++..+++|||||+.+...++.||.+.+++++|+||++++|+|+ +++||||||||+
T Consensus        32 PGP~i~v~~GD~v~i~l~N~l~~~~~~iH~Hg~~~~~~~~~~~~~~~~~~~I~PG~s~~y~f~a~~~Gt~~YH~H~  107 (129)
T d1aoza1          32 PGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHL  107 (129)
T ss_dssp             SCCCEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEECS
T ss_pred             CCCeEEEECCcEEEEEEEeCCCCCCeeeeeccceeeccCccccccccccceECCCCEEEEEEECCCCCceEEecCC
Confidence            468999999999999999998656899999999988888899999999999999999999999 999999999995

>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=99.96  E-value=2.3e-29  Score=147.90  Aligned_cols=75  Identities=39%  Similarity=0.771  Sum_probs=68.3

Q ss_pred             CcccEEEecCCEEEEEEEeCCCC----CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDG----LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAH   74 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~----~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H   74 (75)
                      ++++||+++||+|+|+|+|+++.    .+++|||||+.+...++.||++..++++|.||++++|+|+  +++||||||||
T Consensus        32 PGPtI~~~~GD~v~v~~~N~~~~~~~~~~~~iH~HG~~~~~~~~~d~~~~~s~~~i~PG~s~~Y~~~~~~~~Gt~wYH~H  111 (130)
T d1gyca1          32 PSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSH  111 (130)
T ss_dssp             SCCCEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTEEEEEEEECSSCCEEEEEEEC
T ss_pred             cCCeEEEECCeEEEEEEEecCCCcccCCceeEEeccccccccCCCCCccccccCCCCCCCeEEEEEECCCCCceeEEecC
Confidence            46899999999999999999652    4789999999998888899999999999999999999998  68999999999


Q ss_pred             C
Q psy88            75 T   75 (75)
Q Consensus        75 ~   75 (75)
                      +
T Consensus       112 ~  112 (130)
T d1gyca1         112 L  112 (130)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: multi-copper oxidase CueO
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.4e-27  Score=141.79  Aligned_cols=69  Identities=32%  Similarity=0.527  Sum_probs=61.6

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|.|+++ ++++|||||+....  .+||++   +++|.||++++|.|+  +++||||||||.
T Consensus        44 PGP~i~~~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~--~~dG~~---~~~i~pg~~~~y~~~~~~~aGt~wyH~H~  114 (140)
T d1kv7a1          44 LGPAVKLQRGKAVTVDIYNQLT-EETTLHWHGLEVPG--EVDGGP---QGIIPPGGKRSVTLNVDQPAATCWFHPHQ  114 (140)
T ss_dssp             BCCEEEEETTCEEEEEEEECSS-SCBCCEEETCCCCG--GGSCCT---TCCBCTTCEEEEEEECCSCSEEEEEECCC
T ss_pred             CCceEEEECCCEEEEEEEeCcc-ccccEeeeeeecCC--ccCCCc---cceEccCCceeEEEEEecCCeeEEEEECC
Confidence            3678999999999999999999 89999999998763  479876   567999999999999  557999999994

>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=99.93  E-value=2.6e-26  Score=138.85  Aligned_cols=75  Identities=39%  Similarity=0.618  Sum_probs=67.8

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCccccccc-CCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPI-TQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i-~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|.|++....++|||||+.+...++.||.+..+++++ +||++++|.|. +++||||||||+
T Consensus        65 PGPtI~~~~Gd~v~v~l~N~l~~~~~~ih~Hg~~~~~~~~~~g~~~~~~~~i~~pg~~~~y~f~~~~~Gt~wYH~H~  141 (162)
T d2q9oa1          65 MGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHF  141 (162)
T ss_dssp             SCCCEEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTTEEEEEEEECCSCEEEEEEECS
T ss_pred             cCCeEEEECCcEEEEEEEecCcccccccccccccccCCCcCCCCcccccceecCCCCEEEeeecCCCCEEEEeecCC
Confidence            3689999999999999999986578999999999888788999998888887 56999999999 999999999995

>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=6.8e-25  Score=134.58  Aligned_cols=74  Identities=20%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCC----CCCCCCCccc--ccccCCCCEEEEEEc-C---------
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGT----QYSDGVPFVT--QCPITQGNTFRYQFT-A---------   64 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~----~~~DG~~~~~--~~~i~pG~~~~y~~~-~---------   64 (75)
                      ++++||+++||+|+|+|+|.++ ++++|||||+.+...    .+.||.+...  +++|+||++++|+|. .         
T Consensus        58 ~GP~Ira~~GD~i~V~f~N~~~-~~~siH~HG~~~~~~~~~~~~~d~~~~~~~~~~~V~PGet~tY~w~v~~~~gp~~~d  136 (180)
T d1sdda1          58 LGPTLYAEVGDIMKVHFKNKAH-KPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDD  136 (180)
T ss_dssp             CCCCEEEETTCEEEEEEEECSS-SCBCCEEESSCCCTTTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEECCGGGSCCSSS
T ss_pred             cCCeEEEECCcEEeeEEEeCCC-CCccccccccccccccccccccccCCCCCccccccCCCCEEEEEEEeCCcccCccCC
Confidence            4689999999999999999999 899999999987643    2345554433  347999999999998 3         


Q ss_pred             -CCeeeEEccCC
Q psy88            65 -NAGTHFWHAHT   75 (75)
Q Consensus        65 -~~Gt~~YH~H~   75 (75)
                       ++||||||||+
T Consensus       137 ~~~gt~~YHshv  148 (180)
T d1sdda1         137 PPCLTHIYYSYV  148 (180)
T ss_dssp             CSEEEEEEECCS
T ss_pred             CCCEEEEEecCC
Confidence             35899999995

>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.7e-25  Score=136.31  Aligned_cols=72  Identities=17%  Similarity=0.206  Sum_probs=59.7

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC------------cccccccCCCCEEEEEEc--CCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP------------FVTQCPITQGNTFRYQFT--ANA   66 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~------------~~~~~~i~pG~~~~y~~~--~~~   66 (75)
                      ++++||+++||+|+|+|+|+++ ++++|||||+.+...  +||.+            ..++++|+||++++|+|.  +..
T Consensus        84 lGP~Ira~~GD~v~V~~~N~~~-~p~siH~HG~~~~~~--~dg~~~~~~~~~~~~~~~~~~~~V~PGet~tY~w~v~~~~  160 (207)
T d2j5wa3          84 LGPVIWAEVGDTIRVTFHNKGA-YPLSIEPIGVRFNKN--NEGTYYSPNYNPQSRSVPPSASHVAPTETFTYEWTVPKEV  160 (207)
T ss_dssp             SCCCEEEETTEEEEEEEEECSS-SCBCCEEESSBCCGG--GCSBCCBCC-------CCCCSSCBCTTCEEEEEEECCGGG
T ss_pred             cCceEEEECCCEEEEEEEECCC-CCccccccccccCcc--cccccccCCCCcccCCcCcccceecCCCEEEEEEEecCCC
Confidence            4689999999999999999999 899999999986532  34432            345788999999999998  444


Q ss_pred             e---------eeEEccCC
Q psy88            67 G---------THFWHAHT   75 (75)
Q Consensus        67 G---------t~~YH~H~   75 (75)
                      |         |||||||+
T Consensus       161 gP~~~d~~c~T~~YHshv  178 (207)
T d2j5wa3         161 GPTNADPVCLAKMYYSAV  178 (207)
T ss_dssp             SCCSSSCSEEEEEEECBS
T ss_pred             CCccCCCCceeEEEccCC
Confidence            4         99999995

>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=99.90  E-value=3e-24  Score=129.15  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=55.8

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|..    .++||||+.+...  .++.+....++|.||++++|+|+ +++|+||||||.
T Consensus        62 PGP~I~v~~GD~V~i~l~N~~----~~~~~Hg~~~h~~--~~~~~~~~~~~i~PGet~ty~f~a~~pGt~~YH~H~  131 (157)
T d2bw4a1          62 PGPLMVVHENDYVELRLINPD----TNTLLHNIDFHAA--TGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAP  131 (157)
T ss_dssp             SCCEEEEETTCEEEEEEEECT----TCCSCBCCEETTS--CSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             CCceEEEECCcEEEEEEEeCC----CCcceEeeeeccc--CCCcCCcceeeECcCCEEeEEEECCCCccceEEECC
Confidence            357899999999999999964    3667788776654  34444445567999999999999 999999999993

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=99.90  E-value=3.6e-24  Score=129.09  Aligned_cols=67  Identities=19%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +++||+++||+|+|+|+|.++. .+++||+||..       ++..+.++++|.||++++|+|+ +++|+||||||.
T Consensus        64 GPtI~v~~Gd~v~v~~~N~~~~~h~h~ih~hg~~-------~~~~g~~~~~I~PG~t~ty~f~a~~~Gt~~yH~H~  132 (159)
T d1oe2a1          64 GPTLVVHEGDYVQLTLVNPATNAMPHNVEFHGAT-------GALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAP  132 (159)
T ss_dssp             CCCEEEETTCEEEEEEEECTTCCSCBCCEETTSC-------SGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             CCeEEEECCcEEEEEEECCCccccccceeecccc-------CCCCCcccccCCCCCeEEEEEEcCCCceEEEEeCC
Confidence            5789999999999999998752 35677777752       3334445678999999999999 999999999994

>d2j5wa1 b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-23  Score=129.84  Aligned_cols=74  Identities=24%  Similarity=0.358  Sum_probs=60.6

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCC----CCCCCC--cccccccCCCCEEEEEEc-C---------
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQ----YSDGVP--FVTQCPITQGNTFRYQFT-A---------   64 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~----~~DG~~--~~~~~~i~pG~~~~y~~~-~---------   64 (75)
                      ++++||+++||+|+|+|+|+++ ++++|||||+.+....    ..||..  ...+++|+||++++|.|. .         
T Consensus        74 lGP~Ira~~GD~v~V~~~N~~~-~p~siH~HG~~~~~~~~g~~~~dg~~~~~~~~~~v~PG~t~tY~~~~~~~~~p~~~d  152 (192)
T d2j5wa1          74 LGPIIKAETGDKVYVHLKNLAS-RPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGD  152 (192)
T ss_dssp             SCCCEEEETTCEEEEEEEEESS-SCBCCEESSSBCCGGGCCCCSCCCCCGGGTGGGCBCTTCEEEEEEECCSTTSCCTTS
T ss_pred             cCCeEEEECCcEEEEEEEeCCC-CCcceeccCcccCCcccccccCCCCCCCCcccCcccCCCEEEEEEEccCccccccCC
Confidence            3689999999999999999999 8999999999876431    234433  235788999999999998 3         


Q ss_pred             -CCeeeEEccCC
Q psy88            65 -NAGTHFWHAHT   75 (75)
Q Consensus        65 -~~Gt~~YH~H~   75 (75)
                       ++||||||||+
T Consensus       153 ~~~gt~~YHsHv  164 (192)
T d2j5wa1         153 GNCVTRIYHSHI  164 (192)
T ss_dssp             CSEEEEEEECCS
T ss_pred             CCCceEEEeCCC
Confidence             36899999995

>d2j5wa4 b.6.1.3 (A:706-884) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.4e-23  Score=126.80  Aligned_cols=65  Identities=18%  Similarity=0.277  Sum_probs=55.6

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc--CCC---------eee
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT--ANA---------GTH   69 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~--~~~---------Gt~   69 (75)
                      ++++||+++||+|+|+|+|+++ ++++|||||+.....  .|       ++|+||++++|+|.  +..         +||
T Consensus        84 lGP~IraevGD~i~V~f~N~a~-~p~SiH~HGv~~~~~--~~-------~~v~PGet~tY~w~v~~~~gp~~~d~~c~t~  153 (179)
T d2j5wa4          84 LGPQLHADVGDKVKIIFKNMAT-RPYSIHAHGVQTESS--TV-------TPTLPGETLTYVWKIPERSGAGTEDSACIPW  153 (179)
T ss_dssp             SCCCEEEETTEEEEEEEEECSS-SCBCCEESSCBCSCS--CC-------CCBCTTCEEEEEEECCGGGSCCTTSCSEEEE
T ss_pred             cCCeEEEECCCEEEEEEEeCCC-CCEeEeeccccCCCC--CC-------CcccCCccEEEEEEecCccCCccCCCCceeE
Confidence            4689999999999999999999 899999999987543  33       35899999999998  333         499


Q ss_pred             EEccCC
Q psy88            70 FWHAHT   75 (75)
Q Consensus        70 ~YH~H~   75 (75)
                      |||||+
T Consensus       154 ~YHShv  159 (179)
T d2j5wa4         154 AYYSTV  159 (179)
T ss_dssp             EEECCT
T ss_pred             EEecCC
Confidence            999995

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=99.88  E-value=2.7e-23  Score=124.10  Aligned_cols=68  Identities=21%  Similarity=0.231  Sum_probs=53.6

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +++||+++||+|+|+|+|..+    ++||||+.+....+.||.  ..++.|.||++++|+|+ +++|+||||||.
T Consensus        57 GP~i~v~~Gd~v~v~~~N~~~----~~~~H~~~~h~~~~~~~~--~~~~~i~PG~t~~y~f~a~~~Gt~~YH~H~  125 (151)
T d1kbva1          57 GRMIRVREGDTVEVEFSNNPS----STVPHNVDFHAATGQGGG--AAATFTAPGRTSTFSFKALQPGLYIYHCAV  125 (151)
T ss_dssp             CCBEEEETTCEEEEEEEECTT----CSSCBCCEETTCCSGGGG--TTTTCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             CCeEEEECCCEEEEEEEcCCC----CceeeeccccccccCCCC--cceeeeCCCCEEEEEEeCCCCeEEEEECCC
Confidence            578999999999999999754    355566555544334543  34667999999999999 999999999993

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.87  E-value=6.5e-23  Score=122.79  Aligned_cols=69  Identities=22%  Similarity=0.171  Sum_probs=50.9

Q ss_pred             CcccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++++||+++||+|+|+|+|..+  ....|+||++..  ...+|...  ..+|+||++++|+|+ +++|+||||||.
T Consensus        60 PGPti~v~~Gd~v~i~~~N~~~--~~~~H~~~~h~~--~~~~~~~~--~~~i~PG~t~ty~f~a~~~Gt~~YH~H~  129 (153)
T d1mzya1          60 PGPLMIVHEGDYVELTLINPPE--NTMPHNIDFHAA--TGALGGGG--LTLINPGEKVVLRFKATRAGAFVYHCAP  129 (153)
T ss_dssp             SCCEEEEETTCEEEEEEEECTT--CCSCBCCEETTS--CSGGGGGG--GCCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             CCCcEEEeCCCEEEEEEEcCCC--CceEccCccccC--CcCCCCCc--cccccCCCEEEEEEEcCCCceEEEEeCC
Confidence            3578999999999999999754  233344443322  22344333  347999999999999 999999999994

>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Spore coat protein A, CotA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2.3e-22  Score=122.99  Aligned_cols=73  Identities=19%  Similarity=0.231  Sum_probs=58.4

Q ss_pred             CcccEEEecCCEEEEEEEeCCCC---------------------CCceEEeCCccccCCCCCCCCCc--cc---ccccCC
Q psy88             1 MLYPKNVCEGDRVVVDVRNSMDG---------------------LENTIHWHGIHQRGTQYSDGVPF--VT---QCPITQ   54 (75)
Q Consensus         1 ~~~~i~~~~Gd~v~i~~~N~~~~---------------------~~~~iH~HG~~~~~~~~~DG~~~--~~---~~~i~p   54 (75)
                      ++++||+++||+|+|++.|+++.                     .+++|||||+..+.  .+||.+.  ++   ..+..+
T Consensus        55 PGPtI~v~~Gd~v~v~~~N~Lp~~~~~~~~~~~~~~~~~~~~~~~~t~iH~HG~~~~~--~~DG~~~~~~~~~~~~~~~~  132 (181)
T d1gska1          55 PGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPD--DSDGYPEAWFSKDFEQTGPY  132 (181)
T ss_dssp             SCCBEEEETTCCEEEEEEECCCSSCSSCCCTTCC-------CCSCCBCEEEETCCCCG--GGSCCTTSCBCGGGSSBCTT
T ss_pred             CCCeEEEeCCeEEEEEEEeCCCcCccccccccccccccccccCCCcceeeeeccccCC--ccCCCcccccccCcccCCCC
Confidence            36899999999999999999851                     35899999998764  4788764  23   334556


Q ss_pred             CCEEEEEEc--CCCeeeEEccCC
Q psy88            55 GNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus        55 G~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      |++++|+|+  +++||||||||.
T Consensus       133 ~~~~~y~~~~~~~~Gt~WYH~H~  155 (181)
T d1gska1         133 FKREVYHYPNQQRGAILWYHDHA  155 (181)
T ss_dssp             CCCSEEEECCCSCSEEEEEEECC
T ss_pred             CcceeEEeecCCCCEEEEeCCCC
Confidence            788899999  567999999994

>d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=99.78  E-value=9e-20  Score=108.70  Aligned_cols=72  Identities=19%  Similarity=0.187  Sum_probs=59.6

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC----cccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP----FVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~----~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .+|++++||+|+|.+.|.....++++|+||..+... +.||.+    ...++.|+||++.+++|+ ++||+||||||.
T Consensus        51 ~~l~~~~Ge~vri~v~N~~~~~~~~~H~hG~~f~~v-~~~G~~~~~~~~~T~~v~pg~~~~~~f~a~~PG~y~~h~H~  127 (151)
T d1kbva2          51 NALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKV-YVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHS  127 (151)
T ss_dssp             GCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSEE-EGGGSSCEECSBSEEEECTTEEEEEEEEECSCEEEEEEESS
T ss_pred             cceEEEeCCeEEEEEEcCCccccccceeecceeeEE-ecCCCcCCcccceeEecccCceeEEeeecCCCceEEEECCc
Confidence            369999999999999996543789999999887543 456643    234678999999999999 999999999993

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=99.78  E-value=2.3e-19  Score=106.43  Aligned_cols=73  Identities=18%  Similarity=0.040  Sum_probs=54.0

Q ss_pred             ccEEEecCCEEEEEEEeCCCCC--CceEEeCCccccCC--CCCCCCCcccccccCCCCEEEEEEc--CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGL--ENTIHWHGIHQRGT--QYSDGVPFVTQCPITQGNTFRYQFT--ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~--~~~iH~HG~~~~~~--~~~DG~~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H~   75 (75)
                      ++|++++||+|+|+|.|..+..  +..||+||..+...  ...++.+...++.+.||++++|.|.  ++||+||||||.
T Consensus        60 Pti~v~~Gd~V~i~v~N~~~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~f~~~~~pGty~YhCh~  138 (153)
T d1e30a_          60 PTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQI  138 (153)
T ss_dssp             CEEEECTTCEEEEEEEECCTTCCCCCEEESCCSSCCSSCCCCSEEEEBCCCCCCBTTEEEEEEEEECCCSEEEEEECCS
T ss_pred             CeEEEeCCCEEEEEEEeCCCCCcccEEEEcCCCCccccccccccCCCccceeeecCCCEEEEEEEeCCCCeEEEEeCCc
Confidence            5899999999999999975423  45566666554321  1123333345778999999999997  789999999984

>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=4e-19  Score=104.36  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++.+++++||.|++++.|.... ..+++|+||..+...  .+|.....+.+|.||++++++|+ +++|+|+||||.
T Consensus        51 ~p~~~v~~gd~v~~~l~n~g~~~~~h~iH~HG~~f~~~--~~~~~~~dt~~i~pg~~~t~~~~~~~pG~w~~HcH~  124 (139)
T d1sddb2          51 LPGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLEN--GTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEV  124 (139)
T ss_dssp             CCCCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEEC--SSSCEEESSEEECTTEEEEEEEECCSSEEEEEECCC
T ss_pred             CCccccccCCcEEEEEEecCCCCCcccEEEcceEEEec--cCCCCcCCeEEECCCCEEEEEEecCCCEeEEEEeCC
Confidence            3578999999999999997531 469999999887643  35555566788999999999999 999999999995

>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6e-19  Score=104.58  Aligned_cols=72  Identities=21%  Similarity=0.190  Sum_probs=61.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .++|++++||+++++|.|.... ..+++|+||..+...  .+|.+...++.|+||++.+++|. +.+|+|+||||.
T Consensus        59 ~~~l~v~~Gd~v~~~l~n~g~~~~~h~~H~HG~~f~~~--~~g~~~~dtv~i~pg~~~~~~~~a~~pG~w~~HCHi  132 (149)
T d2j5wa5          59 LQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYK--HRGVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHV  132 (149)
T ss_dssp             CCCCEEETTCEEEEEEEECCSTTCCEEEEESSCCEEET--TTTCEEESEEEECTTCEEEEEECCCSCEEEEEEECC
T ss_pred             CCCeEEEcCCcEEEEEEecCCCCCccceEEEeeEeeee--ccCCCCcceEEECCCceEEEEEeCCCCeeEEEEcCC
Confidence            3679999999999999997542 479999999876543  46766666788999999999999 999999999995

>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.8e-18  Score=100.30  Aligned_cols=69  Identities=16%  Similarity=0.106  Sum_probs=56.4

Q ss_pred             cccEEEecCCEEEEEEEeCCC-CCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMD-GLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~-~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .++|++++||+|++++.|... ...+++|+||..+...    + ....++.|+||++.+++|. +.+|+|+||||.
T Consensus        58 ~p~l~v~~Gd~v~~~l~n~g~~~~~h~iH~hG~~f~~~----~-~~~dt~~i~pg~~~t~~~~a~~pG~w~~HCH~  128 (145)
T d2j5wa2          58 QPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWR----G-ERRDTANLFPQTSLTLHMWPDTEGTFNVECLT  128 (145)
T ss_dssp             CCCCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEET----T-EEESEEEECTTCEEEEEECCCSCEEEEEEECS
T ss_pred             CCCeEEEcCCeEEEEEEecCCCCcccceEecccEEEec----c-cCccceEECCCCEEEEEEEcCCCEeEEEEcCC
Confidence            367999999999999999543 1469999999876532    2 2334667999999999999 999999999995

>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ceruloplasmin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=98.55  Aligned_cols=68  Identities=13%  Similarity=0.124  Sum_probs=56.3

Q ss_pred             ccEEEecCCEEEEEEEeCCC-CCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMD-GLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~-~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      ++|++++||++++.|.|... ...+++|+||..+....     ....+++|+||++++++|. ++||+|+||||.
T Consensus        60 p~l~~~~gd~v~~~l~n~g~~~~~h~~H~hg~~~~~~~-----~~~dt~~i~pg~~~~v~f~~~~pG~w~~HCH~  129 (146)
T d1kcwa2          60 PGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKN-----YRIDTINLFPATLFDAYMVAQNPGEWMLSCQN  129 (146)
T ss_dssp             CCCEEETTEEEEEEEECCCSTTCCEEEEETTSCCCCSS-----SCCSEEEECTTCEEEEEEEECSCEEEEEEECC
T ss_pred             CcceEecCCeEEEEEEEcCCCCcccceEeeeeeeeccC-----CCcceEEecCCCEEEEEEEcCCCeeEEEEcCC
Confidence            67999999999999999653 24699999998765321     2334677999999999999 999999999995

>d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=6.7e-19  Score=100.81  Aligned_cols=69  Identities=13%  Similarity=0.159  Sum_probs=43.1

Q ss_pred             cccEEEecCCEEEEEEEeCCCC-CCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDG-LENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .++|++++||+|++.|.|.... ..+++|+||..+..    +|. ...+.+|.||++.+++|. +.+|+|+||||.
T Consensus        34 ~~~~~v~~Gd~v~~~v~n~g~~~~~h~iH~Hg~~f~~----~~~-~~dtv~i~pg~~~~v~~~a~~pG~w~~HCH~  104 (116)
T d1sdda2          34 MPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ----NHH-KISAITLVSATSTTANMTVSPEGRWTIASLI  104 (116)
T ss_dssp             CCCCCCCCC------BBCCCSSSCEECCBCSSTTCEE----TTE-ECSCCCEETTCCBC--------CCCCCBCCS
T ss_pred             CCCeEEeCCCEEEEEEeccccCCCceeEEEecccccc----CCc-ccceEeecccEEEEEEEEcCCCeEEEEEcCC
Confidence            3578999999999999995431 56899999987753    222 223567999999999999 999999999995

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Red copper protein nitrosocyanin
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.61  E-value=1.1e-15  Score=86.78  Aligned_cols=60  Identities=25%  Similarity=0.195  Sum_probs=50.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +.+|++++||+|+|.++|... .++++++++...             +..+.||++.++.|+ +++|+||||||.
T Consensus        37 P~~i~v~~Gd~V~~~~~n~d~-~~H~~~i~~~~~-------------~~~~~pG~t~~~~f~~~~~G~y~y~C~~   97 (112)
T d1ibya_          37 PETLVVKKGDAVKVVVENKSP-ISEGFSIDAFGV-------------QEVIKAGETKTISFTADKAGAFTIWCQL   97 (112)
T ss_dssp             SCEEEEETTCEEEEEEEECSS-SCEEEEEGGGTE-------------EEEECTTCEEEEEEECCSCEEEEEBCSS
T ss_pred             CCEEEEeCCCEEEEEEEeCCC-Cceeeeeccccc-------------ccccCCcceEEEEEEeccceEEEEECcc
Confidence            457999999999999999976 678888877532             124789999999999 999999999983

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=2.8e-15  Score=87.40  Aligned_cols=62  Identities=27%  Similarity=0.320  Sum_probs=52.4

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|++++||+|+|+|+|... .+..+|++++....      .    ...+.||++.+|+|+ +++|+|+|||+
T Consensus        51 p~~i~V~~Gd~V~~~ltN~d~-~~~v~H~~~i~~~~------~----~~~~~PG~~~~~~F~a~~~G~y~~~C~  113 (132)
T d1fwxa1          51 IESFTVKEGDEVTVIVTNLDE-IDDLTHGFTMGNYG------V----AMEIGPQMTSSVTFVAANPGVYWYYCQ  113 (132)
T ss_dssp             CSEEEEETTCEEEEEEEECCC-STTCCEEEEETTTT------E----EEEECTTCEEEEEEECCSCEEEEEECC
T ss_pred             CCEEEEcCCCEEEEEEEcCCC-CccceEeechhhhc------c----ccccCCCEEEEEEEeCCCCeEEEEECc
Confidence            568999999999999999887 67889998874432      1    224889999999999 99999999997

>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=99.35  E-value=1e-12  Score=79.42  Aligned_cols=69  Identities=19%  Similarity=0.194  Sum_probs=55.3

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      +|++++||+|+|...|. . +.+++|.||..+... |.+|...      +.+..|+||+....+|+ ++||+|.||||.
T Consensus        67 ~l~akvGErV~i~~~~~-n-~~s~fHliG~hFD~V-~~~G~~~~~p~~~~qTv~VppG~a~~ve~~f~~PG~y~~v~H~  142 (173)
T d2bw4a2          67 ALTAAVGERVLVVHSQA-N-RDTRPHLIGGHGDYV-WATGKFRNPPDLDQETWLIPGGTAGAAFYTFRQPGVYAYVNHN  142 (173)
T ss_dssp             CEEEETTCEEEEEEEES-S-SCBCEEEETCCEEEE-ETTCCTTSCCEEEESCCCBCTTEEEEEEEECCSCEEEEEEESS
T ss_pred             CcccccCCeEEEEecCC-C-CCccceeccceeEEE-CCCCcccCCCcCCceeEEccCCccEEEEEEecCceEEEEEech
Confidence            59999999998865443 4 789999999887654 4566421      22567899999999999 999999999994

>d1aoza3 b.6.1.3 (A:339-552) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=99.30  E-value=2.3e-12  Score=79.98  Aligned_cols=72  Identities=22%  Similarity=0.188  Sum_probs=53.7

Q ss_pred             cEEEecCCEEEEEEEeCCC-----CCCceEEeCCccccCCCCCCCCC--------------cccccccCCCCEEEEEEc-
Q psy88             4 PKNVCEGDRVVVDVRNSMD-----GLENTIHWHGIHQRGTQYSDGVP--------------FVTQCPITQGNTFRYQFT-   63 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~-----~~~~~iH~HG~~~~~~~~~DG~~--------------~~~~~~i~pG~~~~y~~~-   63 (75)
                      .++++.|+.|+|.|.|...     ...|++|+||..+......+|..              ...+..|+||+..+++|+ 
T Consensus        80 v~~~~~g~~veivl~n~~~~~~~~~~~HP~HlHG~~F~vl~~~~g~~~~~~~~~~n~~~p~~rDTv~v~~g~~~~ir~~a  159 (214)
T d1aoza3          80 VYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVA  159 (214)
T ss_dssp             CEEECTTCEEEEEEEECCCSSTTCCCCEEEEETTCCEEEEEEEESSCCGGGGGGSCCSSCCEESEEEECTTEEEEEEEEC
T ss_pred             eEEecCCCEEEEEEeccccccCCCCCCcceEeecceeEEeccCCCcccccccccccccCCceecCcccCCCceEEEEEec
Confidence            5799999999999999642     14799999997764321112211              112445889999999999 


Q ss_pred             CCCeeeEEccCC
Q psy88            64 ANAGTHFWHAHT   75 (75)
Q Consensus        64 ~~~Gt~~YH~H~   75 (75)
                      +.+|.|+||||.
T Consensus       160 dnpG~w~~HCH~  171 (214)
T d1aoza3         160 DNPGVWAFHCHI  171 (214)
T ss_dssp             CSCEEEEEEESS
T ss_pred             CCCeeEEEEECc
Confidence            999999999994

>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: multi-copper oxidase CueO
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.7e-12  Score=78.86  Aligned_cols=72  Identities=15%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc-------ccccccCCCCEE-EEEEc---CCCeeeEE
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF-------VTQCPITQGNTF-RYQFT---ANAGTHFW   71 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~-------~~~~~i~pG~~~-~y~~~---~~~Gt~~Y   71 (75)
                      +.|.+++|+.++++|.|..+...+++|+||..+.... .+|.+.       ..+..|+||+++ ..+|.   +.+|.|.|
T Consensus        85 p~~~~~~G~~erw~i~N~~~~~~HP~HlHG~~F~Vl~-~~g~~~~~~~~~~kDTv~v~~~~~~v~v~f~~~~~~~G~w~f  163 (181)
T d1kv7a3          85 PMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILS-ENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMA  163 (181)
T ss_dssp             CSEECCSSSCEEEEEECTTCCCCEEEEETTCCBEEEE-BTTBCCCGGGSSSBSEEEESSSEEEEEECCCSCCCGGGCEEE
T ss_pred             CceEeCCCCEEEEEEEeCCCCCccCceEeceEEEEEe-cccCCccccCCcceeEEEeCCCceEEEEEEEeeCCCCCeEEE
Confidence            3589999999999999987635899999998875432 233221       124457777653 45565   44699999


Q ss_pred             ccCC
Q psy88            72 HAHT   75 (75)
Q Consensus        72 H~H~   75 (75)
                      |||.
T Consensus       164 HCHi  167 (181)
T d1kv7a3         164 HCHL  167 (181)
T ss_dssp             EESS
T ss_pred             eCCh
Confidence            9994

>d1hfua3 b.6.1.3 (A:304-503) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=99.25  E-value=1.7e-11  Score=75.24  Aligned_cols=72  Identities=21%  Similarity=0.290  Sum_probs=54.4

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc--------cccccc-CCCCEEEEEEc-CCCeeeEEc
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF--------VTQCPI-TQGNTFRYQFT-ANAGTHFWH   72 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~--------~~~~~i-~pG~~~~y~~~-~~~Gt~~YH   72 (75)
                      .+++++.|+.+++.+.|.....+|+||+||..+.... .+|.+.        ..+..| ++|+...++|. +.+|.|.||
T Consensus        70 ~v~~~~~~~~~~~v~~~~~~~~~Hp~HlHg~~F~vl~-~~g~~~~~~~~~~~rDtv~v~~~G~~~~ir~~adnpG~w~~H  148 (200)
T d1hfua3          70 SVYELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVR-SAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFH  148 (200)
T ss_dssp             SEEEECSSCEEEEEEECCSTTCCCEEEETTCCEEEEE-CTTCCCCCCSSBCEESEEECCSTTCEEEEEEECCSCEEEEEE
T ss_pred             ceEEecCCcceEEEEeeccccccCceeecCCcEEEEe-ccCCCCCccccCcccceEEeCCCCEEEEEEEECCCCeeeEEE
Confidence            4689999999999999887646899999998765432 222211        123346 46788889999 999999999


Q ss_pred             cCC
Q psy88            73 AHT   75 (75)
Q Consensus        73 ~H~   75 (75)
                      ||.
T Consensus       149 CHi  151 (200)
T d1hfua3         149 CHI  151 (200)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            994

>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Spore coat protein A, CotA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.23  E-value=5.3e-12  Score=74.76  Aligned_cols=71  Identities=20%  Similarity=0.276  Sum_probs=52.9

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCC---------------CCCCC---------cccccccCCCCEEE
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQY---------------SDGVP---------FVTQCPITQGNTFR   59 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~---------------~DG~~---------~~~~~~i~pG~~~~   59 (75)
                      +..++.|++.+++|.|... .++++|.||..+.....               .++..         .-....++||+..+
T Consensus        42 ~~~~~~G~~e~W~i~N~~~-~~HP~HiHg~~F~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kDTv~v~pg~~~~  120 (154)
T d1gska3          42 TETPKVGTTEIWSIINPTR-GTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLR  120 (154)
T ss_dssp             CBCCBTTCEEEEEEEECSS-SCEEEEESSCCEEEEEEEEBCHHHHHHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEEEE
T ss_pred             ccccCCCCEEEEEEEeCCC-CCCCEEECCceEEEEEecCCCcccccccccccccCCCcCCCcccCcccccEEeCCCCEEE
Confidence            4467899999999999987 89999999976543210               00000         01234588999999


Q ss_pred             EEEc--CCCeeeEEccCC
Q psy88            60 YQFT--ANAGTHFWHAHT   75 (75)
Q Consensus        60 y~~~--~~~Gt~~YH~H~   75 (75)
                      ..++  +.+|.|.||||.
T Consensus       121 i~~~~~d~pG~w~~HCHi  138 (154)
T d1gska3         121 IAATFGPYSGRYVWHCHI  138 (154)
T ss_dssp             EEEECCSCCEEEEEEESC
T ss_pred             EEEEeCCCCcceEEecCc
Confidence            9997  889999999995

>d1oe1a2 b.6.1.3 (A:160-336) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=99.23  E-value=1.5e-11  Score=74.38  Aligned_cols=69  Identities=16%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .|+++.||+|+|- .+..+ +.+++|.||-.+... |.+|...      +.+..|+||+....+++ ++||+|.||||.
T Consensus        67 ~l~akvGe~Vri~-~~~~N-~~ssfHlIG~hfD~V-~~~G~~~n~p~~~~qT~~V~pG~~~~v~~tf~~PG~Y~fV~H~  142 (177)
T d1oe1a2          67 ALTAKVGETVLLI-HSQAN-RDTRPHLIGGHGDWV-WETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHN  142 (177)
T ss_dssp             CEEEETTCEEEEE-EEESS-SCBCEEETTCCEEEE-ETTCCTTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESS
T ss_pred             CcccccCCeEEEE-ecCCC-CCccceecccccceE-ccCCeeCCCCCcCceeEEecCCccEEEEEEecCceEEEEEecH
Confidence            6999999999984 45666 899999999887644 4566321      23667999999999999 999999999994

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.23  E-value=1.7e-11  Score=71.00  Aligned_cols=62  Identities=26%  Similarity=0.323  Sum_probs=47.3

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++.++|... ..-.+|...+  +.    -|.    ...+.||++.++.|+ +++|+|+|+|+
T Consensus        50 p~~i~V~~Gd~V~~~vtn~~~-s~Dv~H~f~i--p~----~~v----~~~~~PG~t~~~~f~~~~~G~y~~~C~  112 (131)
T d1qnia1          50 MTDFKVKEGDEVTVYITNLDM-VEDVTHGFCM--VN----HGV----SMEISPQQTASVTFTAGKPGVYWYYCN  112 (131)
T ss_dssp             CSEEEEETTCEEEEEEEECCC-STTCCEEEEE--TT----TTE----EEEECTTCEEEEEEECCSSEEEEEECC
T ss_pred             cceEEecCCCEEEEEEEccCC-CCcceEEEEE--ec----cCc----ccccCCCceEEEEEEcCCCEEEEEECc
Confidence            467999999999999999865 3445544443  21    111    123789999999999 99999999997

>d1v10a3 b.6.1.3 (A:305-494) Laccase {Rigidoporus lignosus [TaxId: 219653]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Rigidoporus lignosus [TaxId: 219653]

Probab=99.14  E-value=8.4e-11  Score=71.31  Aligned_cols=68  Identities=18%  Similarity=0.329  Sum_probs=49.9

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC--------cccccccCCC-CEEEEEEc-CCCeeeEEcc
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP--------FVTQCPITQG-NTFRYQFT-ANAGTHFWHA   73 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~--------~~~~~~i~pG-~~~~y~~~-~~~Gt~~YH~   73 (75)
                      .+.+..++.++|.+.|.   .++.+|+||..+.... .+|..        ...+..|+|| +...++|. +.+|.|.|||
T Consensus        73 ~~~~~~~~~~~i~~~~~---~~HP~HlHG~~F~Vl~-~~~~~~~~~~~~~~rDTv~v~~~g~~~~irf~adnpG~w~~HC  148 (190)
T d1v10a3          73 VISLPANQVIEISIPGG---GNHPFHLHGHNFDVVR-TPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHC  148 (190)
T ss_dssp             EEEECTTCEEEEEEECC---BSCEEEESSCCEEEEE-CTTCSCCCCSSCCEESEEECCBSSCEEEEEEECCSCEEEEEEE
T ss_pred             eEEccCccEEEEEeccC---ccccccccCceEEEEE-cCCCcccccccCcccCEEEeCCCeEEEEEEEEcCCCeeEEEec
Confidence            57888999999988885   5799999998875432 22221        1123447775 56779999 9999999999


Q ss_pred             CC
Q psy88            74 HT   75 (75)
Q Consensus        74 H~   75 (75)
                      |.
T Consensus       149 Hi  150 (190)
T d1v10a3         149 HI  150 (190)
T ss_dssp             SC
T ss_pred             Cc
Confidence            94

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.12  E-value=2.5e-10  Score=65.90  Aligned_cols=73  Identities=12%  Similarity=0.083  Sum_probs=47.6

Q ss_pred             cccEEEecCCEEEEEEEeCCC-CCCceEEeCCcccc----------------CCCCCCCC-CcccccccCCCCEEEEEEc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMD-GLENTIHWHGIHQR----------------GTQYSDGV-PFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~-~~~~~iH~HG~~~~----------------~~~~~DG~-~~~~~~~i~pG~~~~y~~~   63 (75)
                      +.+|+++.||+|++.|.|... ..++++..-.....                .....|.. .......+.||++.++.|+
T Consensus        31 p~~i~v~aG~~V~~~~~N~~~~~~~Hn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~t~~~~pg~s~~i~f~  110 (139)
T d1qhqa_          31 QTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFR  110 (139)
T ss_dssp             CSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEEE
T ss_pred             CCeEEECCCCEEEEEEeCCcccceeEEEeecccchhhHHHHHHhhhccchhccccCCCcccccccccccCCcceEEEEEe
Confidence            457999999999999999864 13555544322100                00000100 0112345789999999999


Q ss_pred             -CCCeeeEEccC
Q psy88            64 -ANAGTHFWHAH   74 (75)
Q Consensus        64 -~~~Gt~~YH~H   74 (75)
                       ..+|+|+||||
T Consensus       111 ~~~~G~y~f~Ct  122 (139)
T d1qhqa_         111 TPAPGTYLYICT  122 (139)
T ss_dssp             CCSSEEEEEECC
T ss_pred             cCCCeEEEEEcC
Confidence             99999999997

>d1gyca3 b.6.1.3 (A:301-499) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=99.10  E-value=1.8e-10  Score=70.44  Aligned_cols=72  Identities=15%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             cEEEecCCEEEEEEEeCCC--CCCceEEeCCccccCCCCCCCCCcc----------cccccCCCCEEEEEEc-CCCeeeE
Q psy88             4 PKNVCEGDRVVVDVRNSMD--GLENTIHWHGIHQRGTQYSDGVPFV----------TQCPITQGNTFRYQFT-ANAGTHF   70 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~--~~~~~iH~HG~~~~~~~~~DG~~~~----------~~~~i~pG~~~~y~~~-~~~Gt~~   70 (75)
                      .+.+..++.+++.+.|...  ..+|++|+||..+......++....          ....++||+...++|. +.+|.|+
T Consensus        71 v~~~~~~~~~eiv~~~~~~~~~~~HP~HlHG~~F~vv~~~~~~~~~~~~p~~rdt~~~~~~~~g~~~~irf~adnpG~w~  150 (199)
T d1gyca3          71 VYPLPAHSTIEITLPATALAPGAPHPFHLHGHAFAVVRSAGSTTYNYNDPIFRDVVSTGTPAAGDNVTIRFQTDNPGPWF  150 (199)
T ss_dssp             EEEECTTCEEEEEEECCTTSCSCSCEEEETTCCEEEEECTTCCCCCSSSCCEESEEECCCGGGTCEEEEEEECCSCEEEE
T ss_pred             eEEeccCceeEEEeecccccCCCceeeeecCCcEEEEeecCCCccCccCcccccceeeeccCCCcEEEEEEECCCCeeEE
Confidence            4678889999999887532  2579999999887643322332211          0123479999999999 9999999


Q ss_pred             EccCC
Q psy88            71 WHAHT   75 (75)
Q Consensus        71 YH~H~   75 (75)
                      ||||.
T Consensus       151 ~HCHi  155 (199)
T d1gyca3         151 LHCHI  155 (199)
T ss_dssp             EEESS
T ss_pred             EEcCc
Confidence            99994

>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Coagulation factor V
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.96  E-value=8.8e-11  Score=61.00  Aligned_cols=25  Identities=16%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             ccCCCCEEEEEEc--CCCe---------eeEEccCC
Q psy88            51 PITQGNTFRYQFT--ANAG---------THFWHAHT   75 (75)
Q Consensus        51 ~i~pG~~~~y~~~--~~~G---------t~~YH~H~   75 (75)
                      +|+||++|+|+|.  +..|         |||||||+
T Consensus         2 ~V~PG~t~tY~w~v~~~~gp~~~d~~c~t~~YHsHv   37 (67)
T d1sddb1           2 AIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAV   37 (67)
T ss_dssp             CBCTTCCEECCEECCTTTSCCSSSCSEEEEEEECCS
T ss_pred             cCCCCCeEEEEEEcCCcCCCccCCCCceeEEEEccc
Confidence            4899999999999  4444         99999995

>d2q9oa3 b.6.1.3 (A:344-559) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=98.85  E-value=5.8e-10  Score=68.90  Aligned_cols=71  Identities=21%  Similarity=0.236  Sum_probs=47.1

Q ss_pred             cEEEecCCEEEEEEEeC-----CCCCCceEEeCCccccCCCCCCCC------------------------CcccccccCC
Q psy88             4 PKNVCEGDRVVVDVRNS-----MDGLENTIHWHGIHQRGTQYSDGV------------------------PFVTQCPITQ   54 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~-----~~~~~~~iH~HG~~~~~~~~~DG~------------------------~~~~~~~i~p   54 (75)
                      .+++...+..++.+.+.     .. .+|.||+||..+.......|.                        +...+..++|
T Consensus        62 ~~~~~~~~~~~~~~i~~~~~n~~~-~~HP~HlHG~~F~Vlg~~~~~~~~~~~~~~~~~~~~~~~~n~~~p~~rDTv~v~~  140 (216)
T d2q9oa3          62 IVQVDAVDQWTYWLIENDPEGPFS-LPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPA  140 (216)
T ss_dssp             EEEECCSSCEEEEEEEECTTSSCC-CCEEEEESSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCCEESEEEECT
T ss_pred             eeeccccccceeEEEEeccCCccc-cccceeecCceEEEEeecCCCCCcccccccccccccccccccCCCceeceEEeCC
Confidence            34556656555555432     33 579999999876532111111                        1112345889


Q ss_pred             CCEEEEEEc-CCCeeeEEccCC
Q psy88            55 GNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus        55 G~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      |+..+.+|. +.+|.|.+|||.
T Consensus       141 ~g~~~ir~~adnpG~Wl~HCHi  162 (216)
T d2q9oa3         141 GGWLLLAFRTDNPGAWLFHCHI  162 (216)
T ss_dssp             TSEEEEEEECCSCEEEEEEECC
T ss_pred             CCEEEEEEECCCCeEEEEEccC
Confidence            999999999 999999999994

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.67  E-value=1.2e-08  Score=55.33  Aligned_cols=67  Identities=13%  Similarity=0.136  Sum_probs=39.8

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|++++||+|+  +.|... .++.+.......+.....++... ......|+.  +|+++ ..+|+|+|+|.
T Consensus        17 P~~i~v~~GdtV~--f~n~~~-~~h~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--t~~~tf~~~G~y~y~C~   84 (98)
T d2plta_          17 PKTLTIKSGETVN--FVNNAG-FPHNIVFDEDAIPSGVNADAISR-DDYLNAPGE--TYSVKLTAAGEYGYYCE   84 (98)
T ss_dssp             SSEEEECTTCEEE--EEECSS-CCEEEEECGGGSCTTCCHHHHCE-EEEECSTTC--EEEEECCSCEEEEEECG
T ss_pred             CCEEEECCCCEEE--EEECCC-CceeEEEecCCccccccCCcccc-cccccCCCc--eEEEEecCCceEEEEeC
Confidence            4579999999865  567766 67777666543332111111111 112234555  45666 78899999994

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.64  E-value=9.8e-08  Score=52.60  Aligned_cols=61  Identities=20%  Similarity=0.225  Sum_probs=41.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..|++++||+|+  +.|... .+|++.+..-       .++........+.+|++++|.| +.+|+|.|+|
T Consensus        32 P~~i~V~~GdtV~--f~N~d~-~~H~v~~~~~-------~~~~~~~~~~~~~~g~~~~~tf-~~pG~y~y~C   92 (105)
T d2ov0a1          32 TPELHVKVGDTVT--WINREA-MPHNVHFVAG-------VLGEAALKGPMMKKEQAYSLTF-TEAGTYDYHC   92 (105)
T ss_dssp             SSEEEECTTCEEE--EEECSS-SCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE-CSCEEEEEEC
T ss_pred             CCEEEECCCCEEE--EEECCC-CceeEEEecc-------cCCcccccccccCCCceEEEEe-cCCeEEEEEe
Confidence            4679999999876  578766 6777654321       1111222233477899887766 5789999999

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Phormidium laminosum) [TaxId: 32059]

Probab=98.56  E-value=3.7e-08  Score=53.86  Aligned_cols=69  Identities=19%  Similarity=0.164  Sum_probs=45.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCC--CcccccccCCCCEEEEEEc--CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV--PFVTQCPITQGNTFRYQFT--ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~--~~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~H   74 (75)
                      +..|+++.||+|+  |.|... .++............. ..+.  .......+.||+++.+.|.  +.+|+|+|+|.
T Consensus        18 P~~l~v~~GdtV~--f~n~~~-~~h~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~G~y~y~C~   90 (105)
T d2q5ba1          18 PANVTVHPGDTVK--WVNNKL-PPHNILFDDKQVPGAS-KELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCA   90 (105)
T ss_dssp             SSEEEECTTEEEE--EEECSS-CCEEEEECGGGSGGGC-HHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECS
T ss_pred             CCEEEECCCCEEE--EEECCC-CCceeEeecCcccccc-cccCCccccccccccCCceEEEEEEeccCCceEEEEeC
Confidence            4579999999865  567765 6777665543322110 0000  0012345789999999998  78999999995

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=98.56  E-value=3.8e-08  Score=53.64  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=39.4

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC--cccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP--FVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~--~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|... .+|++.......+    .+...  ......+.+|++++|.| +.+|+|.|+|.
T Consensus        18 P~~i~v~~GdtV~~--~n~~~-~~H~~~~~~~~~~----~~~~~~~~~~~~~~~~g~t~~~tf-~~~G~y~Y~C~   84 (98)
T d1pcsa_          18 PSTVTIKAGEEVKW--VNNKL-SPHNIVFDADGVP----ADTAAKLSHKGLLFAAGESFTSTF-TEPGTYTYYCE   84 (98)
T ss_dssp             SSEEEECTTCEEEE--EECSS-CCEEEEECCSSSC----HHHHHHHCEEEEECSTTCEEEEEC-CSCEEEEEECG
T ss_pred             CCEEEECCCCEEEE--eECCC-CccceEEeccccC----CCccccccccccccCCCcEEEEec-cCCceEEEEec
Confidence            45799999998665  47655 5676654322111    00000  01122367898777766 67899999993

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Poplar (Populus nigra), variant italica [TaxId: 3691]

Probab=98.51  E-value=1.7e-07  Score=51.13  Aligned_cols=63  Identities=17%  Similarity=0.269  Sum_probs=39.8

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc------ccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF------VTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~------~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..|+++.||+|++  .|... .+|++-+-....+     .|...      .......||+++++.| ..+|+|.|+|
T Consensus        16 P~~iti~~GdtV~f--~n~~~-~~Hnv~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~t~~~tF-~~~G~y~Y~C   84 (99)
T d1plca_          16 PSEFSISPGEKIVF--KNNAG-FPHNIVFDEDSIP-----SGVDASKISMSEEDLLNAKGETFEVAL-SNKGEYSFYC   84 (99)
T ss_dssp             SSEEEECTTCEEEE--EECSS-CCBCCEECTTSSC-----TTCCHHHHCCCTTCCBCSTTCEEEEEC-CSCEEEEEEC
T ss_pred             CCEEEECCCCEEEE--EECCC-CCccEEEccCcCC-----CccccccCcccccccccCCCceEEEec-CCCceEEEEe
Confidence            45799999998764  68665 6777654432221     11110      0122357899776655 5789999999

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: White campion (Silene pratensis) [TaxId: 52853]

Probab=98.46  E-value=9.4e-08  Score=51.80  Aligned_cols=68  Identities=7%  Similarity=0.056  Sum_probs=37.4

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCC-CCCcccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSD-GVPFVTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~D-G~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..|++++||+|+  +.|... .++.+.+............ +..........|++++++.| ..+|+|+|+|
T Consensus        16 P~~i~v~~GdtV~--f~n~~~-~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tf-~~~G~y~y~C   84 (99)
T d1bypa_          16 PSDLSIASGEKIT--FKNNAG-FPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTL-TEKGTYKFYC   84 (99)
T ss_dssp             SSEEEECTTEEEE--EEECSS-CCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEE-CSCEEEEEEC
T ss_pred             CCEEEECCCCEEE--EEECCC-CceeEEEecCCCCCccccccCcccccccccCCCceEEEEe-cCCceEEEEE
Confidence            4679999999865  568765 5666554332221110000 00000112245666665555 6789999999

>d1v10a2 b.6.1.3 (A:137-304) Laccase {Rigidoporus lignosus [TaxId: 219653]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Rigidoporus lignosus [TaxId: 219653]

Probab=98.37  E-value=6.3e-07  Score=53.20  Aligned_cols=70  Identities=16%  Similarity=0.119  Sum_probs=56.1

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcc----cccccCCCCEEEEEEc--CCCeeeEEcc
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV----TQCPITQGNTFRYQFT--ANAGTHFWHA   73 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~----~~~~i~pG~~~~y~~~--~~~Gt~~YH~   73 (75)
                      .+|.++.|++++++|.|........++.+|..+... ..||.+..    ....|.|||+++..++  +.+|.||...
T Consensus        55 ~~~~v~~g~~~rlRlina~~~~~~~~~id~H~~~Vi-a~DG~~v~P~~~d~i~i~~GqR~dvlv~~~~~~~~y~ira  130 (168)
T d1v10a2          55 AVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVI-EVDGVSHQPLTVDSLTIFAGQRYSVVVEANQAVGNYWIRA  130 (168)
T ss_dssp             CEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEE-EETTEEEEEEEESBEEECTTCEEEEEEECCSCSSEEEEEE
T ss_pred             eEEEECCCCEEEEEEEecccCceEEEEECCCeEEEE-EeCCeecCceEEeEEEEccCceEEEEEECCCCCCcEEEEE
Confidence            468999999999999999875568889999887654 47997532    3455899999999999  5688888653

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]

Probab=98.36  E-value=7e-07  Score=47.98  Aligned_cols=60  Identities=18%  Similarity=0.209  Sum_probs=39.4

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|+  +.|... ..+.+...+...       + .. ....+.||++++|.| +.+|+|.|+|-
T Consensus        18 P~~i~I~~GdtV~--f~n~d~-~~h~~~~~~~~~-------~-~~-~~~~~~~g~~~~~tF-~~~G~y~Y~C~   77 (91)
T d1bxua_          18 PSTIEIQAGDTVQ--WVNNKL-APHNVVVEGQPE-------L-SH-KDLAFSPGETFEATF-SEPGTYTYYCE   77 (91)
T ss_dssp             SSEEEECTTCEEE--EEECSS-CCEEEEETTCGG-------G-CE-EEEECSTTCEEEEEC-CSCEEEEEECT
T ss_pred             CCEEEECCCCEEE--EEECCc-CCceEEeccccc-------c-cc-cccccCCCCCEEEEe-ccCceEEEEeC
Confidence            5679999999865  578776 566554433211       1 00 122467899877655 67899999994

>d2q9oa2 b.6.1.3 (A:163-343) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=98.31  E-value=9.6e-07  Score=52.97  Aligned_cols=69  Identities=10%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcc----cccccCCCCEEEEEEc--CCCeeeEEc
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV----TQCPITQGNTFRYQFT--ANAGTHFWH   72 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~----~~~~i~pG~~~~y~~~--~~~Gt~~YH   72 (75)
                      ..+.+++|++.+++|.|........++++|..+... ..||.+..    ....|.|||+++..+.  +.+|.||.-
T Consensus        53 ~~~~v~~g~~~rlR~iN~~~~~~~~~~id~h~~~vi-a~DG~~v~P~~~~~~~i~~GqRydvlv~a~~~~~~Y~ir  127 (181)
T d2q9oa2          53 ANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVI-AADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYWFN  127 (181)
T ss_dssp             CEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEE-EETTEEEEEEEESCEEECTTCEEEEEEECCSCSSEEEEE
T ss_pred             eEEEECCCCEEEEEEecccCCccEEEEECCceEEEE-EeCCeEccceEeCEEEecCCcEEEEEEeCCCCCccEEEE
Confidence            468999999999999999865677899999877654 47996542    2455899999999999  678888864

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=98.31  E-value=6.8e-08  Score=52.52  Aligned_cols=65  Identities=11%  Similarity=0.113  Sum_probs=35.9

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCC-------CcccccccCCCCEEEEEEc-CCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGV-------PFVTQCPITQGNTFRYQFT-ANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~-------~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~   73 (75)
                      +..|++++||+|+  |.|... .++...+-   ....  .++.       .........++...+|+++ +.+|+|+|+|
T Consensus        16 P~~l~v~~GdtV~--f~n~~~-~~h~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~G~y~Y~C   87 (102)
T d1kdja_          16 PDSITVSAGEAVE--FTLVGE-TGHNIVFD---IPAG--APGTVASELKAASMDENDLLSEDEPSFKAKVSTPGTYTFYC   87 (102)
T ss_dssp             SSEEEECTTCCEE--EEECSS-SCBCCEEC---CCTT--CCHHHHHHHHHTSCCTTCCBBTTBCEEEECCCSCEEEEEEC
T ss_pred             CCEEEECCCCEEE--EEECCC-CceeEEEe---cCCC--CCcccccccccCcccccccccCCccEEEEeeCCCceEEEEe
Confidence            4679999999876  557655 44443321   1100  0000       0001112334455566777 8899999999


Q ss_pred             C
Q psy88            74 H   74 (75)
Q Consensus        74 H   74 (75)
                      .
T Consensus        88 ~   88 (102)
T d1kdja_          88 T   88 (102)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]

Probab=98.28  E-value=3.4e-07  Score=49.40  Aligned_cols=64  Identities=13%  Similarity=0.144  Sum_probs=32.1

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~   73 (75)
                      +..|++++||+|++.  |... .++....    ..... ....+........++...+|+++ +.+|+|.|+|
T Consensus        18 P~~i~V~~GdtV~f~--~~~~-~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~tf~~~G~y~Y~C   82 (97)
T d2jxma1          18 PKALSISAGDTVEFV--MNKV-GPHNVIF----DKVPA-GESAPALSNTKLAIAPGSFYSVTLGTPGTYSFYC   82 (97)
T ss_dssp             SSEEEECTTCEEEEE--ECSS-CCCCBEE----EECCT-TSCHHHHCBCCCCCSCSCCEEEECCSCSEEEEEC
T ss_pred             CCEEEECCCCEEEEE--ECCC-cceeEEE----ecCCC-ccccccccccccccCcceEEEEecCCCeEEEEEE
Confidence            457999999998765  4433 2222111    11100 01111001111233333455666 7899999999

>d1gyca2 b.6.1.3 (A:131-300) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=98.28  E-value=1.5e-06  Score=51.57  Aligned_cols=70  Identities=16%  Similarity=0.148  Sum_probs=56.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcc----cccccCCCCEEEEEEc--CCCeeeEEc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV----TQCPITQGNTFRYQFT--ANAGTHFWH   72 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~----~~~~i~pG~~~~y~~~--~~~Gt~~YH   72 (75)
                      ..++.++.|++++++|.|........++..|..+... ..||.+..    ....|.|||++++.++  +.+|.||-.
T Consensus        55 ~~~~~v~~g~~~rlRlIN~~~~~~~~~~id~h~~~vi-a~DG~~v~P~~~d~l~i~~gqRydvlv~~~~~~~~y~ir  130 (170)
T d1gyca2          55 LAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVI-EVDGINSQPLLVDSIQIFAAQRYSFVLNANQTVGNYWIR  130 (170)
T ss_dssp             CCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEE-EETTEEEEEEEESBEEECTTCEEEEEEECCSCSSEEEEE
T ss_pred             ceEEEECCCCEEEEEEeecCCCceeeEEeCCCeEEEE-EeCCeeccceEeeEEEecCCeEEEEEEeCCCCCCcEEEE
Confidence            3578999999999999999865678888888876644 47997532    3455899999999999  568999875

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Anabaena variabilis [TaxId: 1172]

Probab=98.27  E-value=2e-07  Score=50.87  Aligned_cols=65  Identities=15%  Similarity=0.112  Sum_probs=41.3

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC------cccccccCCCCEEEEEEc--CCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP------FVTQCPITQGNTFRYQFT--ANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~------~~~~~~i~pG~~~~y~~~--~~~Gt~~YH~   73 (75)
                      +..|+++.||+|+  |.|... ..+......-...     ++..      ........|+++.++.|.  ..+|+|+|.|
T Consensus        18 P~~i~v~~GdtV~--f~n~~~-~~h~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~y~y~C   89 (105)
T d2cj3a1          18 PAKLTIKPGDTVE--FLNNKV-PPHNVVFDAALNP-----AKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYC   89 (105)
T ss_dssp             SSEEEECTTCEEE--EEECSS-CCEEEEECSSSST-----TCCHHHHHHHCEEEEECSTTCEEEEECCTTCCSEEEEEEC
T ss_pred             CCEEEECCCCEEE--EEECCC-CceeeEeccCCCC-----ccccccCCcccccccccCCCcceEEEEEeccCCceEEEEe
Confidence            4579999999866  567655 4554433221111     1110      011334679999999998  7899999999


Q ss_pred             C
Q psy88            74 H   74 (75)
Q Consensus        74 H   74 (75)
                      -
T Consensus        90 ~   90 (105)
T d2cj3a1          90 E   90 (105)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1hfua2 b.6.1.3 (A:132-303) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=98.27  E-value=1.7e-06  Score=51.46  Aligned_cols=71  Identities=14%  Similarity=0.089  Sum_probs=56.1

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcc----cccccCCCCEEEEEEc--CCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFV----TQCPITQGNTFRYQFT--ANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~----~~~~i~pG~~~~y~~~--~~~Gt~~YH~   73 (75)
                      ..+|.+++|++++++|.|........+...|..+... ..||.+..    ....|.|||+++..+.  +.+|.||...
T Consensus        53 ~~~~~v~~g~~~rlR~iN~~~~~~~~~~i~~H~~~vi-a~DG~~v~P~~~~~l~i~~gqR~dvlv~~~~~~~~Y~ira  129 (172)
T d1hfua2          53 LSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTII-EVDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRA  129 (172)
T ss_dssp             CCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEE-EETTEEEEEEEESBEEECTTCEEEEEEECCSCSSEEEEEE
T ss_pred             ceEEEECCCCEEEEEEeeecCCceEEEEeCCCeEEEE-EeCCEEcccEEeceEeccCCeEEEEEEEcCCCCCcEEEEE
Confidence            3578999999999999999865678888888876644 47996532    2455899999999999  5679998754

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]

Probab=98.26  E-value=1.9e-06  Score=48.72  Aligned_cols=58  Identities=19%  Similarity=0.359  Sum_probs=43.8

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|.++.|++|+++++|..  ..     ||+..+.   . |+    +..+.||+..+..|+ +++|+|.|.|+
T Consensus        46 p~~l~vp~G~~V~~~lts~D--V~-----H~f~ip~---~-~v----~~d~~PG~~~~~~~~~~~~G~y~~~C~  104 (122)
T d2cuaa_          46 PNPIEVPQGAEIVFKITSPD--VI-----HGFHVEG---T-NI----NVEVLPGEVSTVRYTFKRPGEYRIICN  104 (122)
T ss_dssp             SSSEEEETTSEEEEEEEBSS--SC-----EEEEETT---S-SC----EEEECBTBCEEEEEECCSCEEEEEECC
T ss_pred             CCEEEEeCCCEEEEEEEcCC--cc-----ceeEecC---C-Ce----eEEEecCceEEEEEEeccceeEEEEeh
Confidence            45799999999999999974  23     4544331   1 11    223679999999999 99999999995

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=98.23  E-value=3.4e-06  Score=46.16  Aligned_cols=61  Identities=13%  Similarity=0.150  Sum_probs=38.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..|.+++||+|+  |.|... .+|++-.......    .++   .....+.+|++++|.| +.+|+|.|+|
T Consensus        33 P~~i~V~~GdtV~--f~N~d~-~~H~v~~~~~~~~----~~~---f~s~~~~~~~~~~~tf-~~~G~y~y~C   93 (106)
T d1id2a_          33 TPEVTIKAGETVY--WVNGEV-MPHNVAFKKGIVG----EDA---FRGEMMTKDQAYAITF-NEAGSYDYFC   93 (106)
T ss_dssp             SSEEEECTTCEEE--EEECSS-SCBCCEECTTTSS----SSC---EECCCBCTTEEEEEEE-CSCEEEEEEC
T ss_pred             CCEEEECCCCEEE--EEECCC-CceeEEeccccCC----ccc---ccccccCCCceEEEec-CCCeEEEEEc
Confidence            4579999999864  678765 5666543221111    111   1112367888877666 5789999999

>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=98.23  E-value=1.4e-06  Score=52.53  Aligned_cols=68  Identities=12%  Similarity=0.074  Sum_probs=52.5

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCc----ccccccCCCCEEEEEEc-C-CC-eeeEE
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPF----VTQCPITQGNTFRYQFT-A-NA-GTHFW   71 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~pG~~~~y~~~-~-~~-Gt~~Y   71 (75)
                      .+|+++.|++++++|.|........++++|..+... ..||.+.    +....|.|||+++..++ + .+ +.||-
T Consensus        75 ~~~~v~~g~~~RlRliNa~~~~~~~~~idgh~~~VI-a~DG~~v~P~~v~~l~i~pGqRydvlv~~~~~~~~~y~i  149 (209)
T d1aoza2          75 YIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVV-EADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWV  149 (209)
T ss_dssp             CCEEECTTCEEEEEEEECCSSCEEEEEETTCCEEEE-EETTEEEEEEEESCEEECTTCEEEEEEECCSCTTCCEEE
T ss_pred             eEEEEcCCCEEEEEEEecCCceeEEEEeCCCcEEEE-ecCCEEcccceeeeEEEccCcEEEEEEEecCCCCCceEE
Confidence            468999999999999999875578999999876654 4798753    23445899999999999 4 33 45664

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]

Probab=98.22  E-value=2.1e-06  Score=48.83  Aligned_cols=70  Identities=9%  Similarity=0.042  Sum_probs=45.7

Q ss_pred             ccEEE-ecCCEEEEEEEeCCCCCCceEEeCCccccC--------------------CCCCCCCCcccccccCCCCEEEEE
Q psy88             3 YPKNV-CEGDRVVVDVRNSMDGLENTIHWHGIHQRG--------------------TQYSDGVPFVTQCPITQGNTFRYQ   61 (75)
Q Consensus         3 ~~i~~-~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~--------------------~~~~DG~~~~~~~~i~pG~~~~y~   61 (75)
                      -.|.| +.|++|+|+|+|... .++.+=.|-+....                    ....|.........+.||++.+..
T Consensus        18 ~~i~V~k~G~~V~l~~~N~g~-l~h~~m~hn~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~via~t~~l~pget~~i~   96 (129)
T d2ccwa1          18 KEIVVDKSCKQFTMHLKHVGK-MAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSVT   96 (129)
T ss_dssp             SEEEECTTCSEEEEEEEECSC-CCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEE
T ss_pred             ceEEEecCCCEEEEEEEcCCc-CchheeeccccccCcccHHHHHHHHHHhhhccccCCCccccccccccccCCCceEEEE
Confidence            46888 789999999999987 66443334332110                    000111111124458899999999


Q ss_pred             Ec-C---CCeeeEEcc
Q psy88            62 FT-A---NAGTHFWHA   73 (75)
Q Consensus        62 ~~-~---~~Gt~~YH~   73 (75)
                      |+ .   ++|+|.|-|
T Consensus        97 f~~p~~~~~G~Y~f~C  112 (129)
T d2ccwa1          97 FDVSKIAAGENYAYFC  112 (129)
T ss_dssp             EEGGGSCTTCCEEEEC
T ss_pred             EEecccCCCccEEEEe
Confidence            98 3   799999999

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]

Probab=98.19  E-value=1.1e-06  Score=47.33  Aligned_cols=68  Identities=12%  Similarity=0.103  Sum_probs=36.7

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +.+|++++||+|++  .|... .++......-..+.....++.. .......|++++++.| +.+|+|+|+|-
T Consensus        17 P~~i~i~~GdtV~f--~n~~~-~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f-~~~G~y~y~C~   84 (98)
T d1iuza_          17 PSKISVAAGEAIEF--VNNAG-FPHNIVFDEDAVPAGVDADAIS-YDDYLNSKGETVVRKL-STPGVYGVYCE   84 (98)
T ss_dssp             SSEEEECTTCEEEE--EECSS-CCEEEEECTTSSCTTCCHHHHC-EEEEECSTTCEEEEEC-CSCEEEEEECT
T ss_pred             CCEEEECCCCEEEE--EECCC-CcccEEEeCCCccccccccccc-ccCcccCCCcEEEEec-CCCceEEEEeC
Confidence            45799999998765  57655 4554443221111100000000 1122356777655443 67899999994

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Methylomonas sp. j [TaxId: 32038]

Probab=98.06  E-value=5.8e-06  Score=46.97  Aligned_cols=71  Identities=11%  Similarity=0.020  Sum_probs=45.6

Q ss_pred             cccEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCC--------------CCCCCC------CcccccccCCCCEEEE
Q psy88             2 LYPKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGT--------------QYSDGV------PFVTQCPITQGNTFRY   60 (75)
Q Consensus         2 ~~~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~--------------~~~DG~------~~~~~~~i~pG~~~~y   60 (75)
                      +-.|.|+.| ++|+|+|+|... .++.+=.|-+.....              ...+..      .......+.||++.+.
T Consensus        17 ~~~i~V~aG~e~v~i~~~N~g~-lph~~~~Hn~vi~~~~~~~~~~~~~~~~~~~~~~~~p~~~~via~t~~l~pGe~~~i   95 (129)
T d1cuoa_          17 TRSISVPASCAEFTVNFEHKGH-MPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSV   95 (129)
T ss_dssp             CSEEEEETTCSEEEEEEEECSS-SCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEE
T ss_pred             ccEEEEeCCCEEEEEEEEeCCc-CCceeEEeeeeecccccHHHHHHHHHhhcccccCCCCCchhhhhhccccCccccceE
Confidence            357899999 799999999987 674432232211100              000110      1112345899999999


Q ss_pred             EEc----CCCeeeEEcc
Q psy88            61 QFT----ANAGTHFWHA   73 (75)
Q Consensus        61 ~~~----~~~Gt~~YH~   73 (75)
                      .|+    ..+|+|.|-|
T Consensus        96 ~f~~p~~~~~G~Y~f~C  112 (129)
T d1cuoa_          96 KFKVSALSKDEAYTYFC  112 (129)
T ss_dssp             EEEGGGCCTTSCEEEEC
T ss_pred             EEEccccCCCceEEEEe
Confidence            998    3599999999

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=98.02  E-value=7.2e-06  Score=46.08  Aligned_cols=60  Identities=17%  Similarity=0.138  Sum_probs=34.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|... ..+..-..+.      ..++..   .....+|+++++.| +.+|+|.|+|-
T Consensus        20 P~~ltV~~GDTV~f--~n~d~-~~h~~~~~~~------~~~~~~---~~~~~~~~~~~~tF-~~~G~Y~Y~C~   79 (123)
T d1pmya_          20 PALVRLKPGDSIKF--LPTDK-GHNVETIKGM------APDGAD---YVKTTVGQEAVVKF-DKEGVYGFKCA   79 (123)
T ss_dssp             SSEEEECTTCEEEE--ECSSS-SCCCEECTTS------SCTTCC---CCBCCTTSCEEEEC-CSCEEEEEECS
T ss_pred             CCEEEECCCCEEEE--eeCCC-Cccccccccc------Cccccc---cccccccccccccc-CCCceEEEEec
Confidence            46799999999766  45433 2222211111      122222   12345667655444 66899999994

>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas putida [TaxId: 303]

Probab=98.01  E-value=1.1e-05  Score=45.75  Aligned_cols=72  Identities=11%  Similarity=0.051  Sum_probs=47.4

Q ss_pred             cccEEEe-cCCEEEEEEEeCCCCCCceEEeCCccccC--------------------CCCCCCCCcccccccCCCCEEEE
Q psy88             2 LYPKNVC-EGDRVVVDVRNSMDGLENTIHWHGIHQRG--------------------TQYSDGVPFVTQCPITQGNTFRY   60 (75)
Q Consensus         2 ~~~i~~~-~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~--------------------~~~~DG~~~~~~~~i~pG~~~~y   60 (75)
                      +..|.|+ .|++|+|+|+|... .++.+=.|-+....                    .+..|..-......|.||++.+.
T Consensus        17 ~~~i~V~~~ge~v~i~~~N~g~-~pH~~~~hn~vi~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vla~t~~l~pGes~~i   95 (128)
T d1nwpa_          17 TKDIAIDKSCKTFTVELTHSGS-LPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKDSV   95 (128)
T ss_dssp             CSEEEECTTCSEEEEEEEECSS-CCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEEEE
T ss_pred             CCeEEEecCCcEEEEEEEeCCc-cccceeeecccccccchhHHHHHHHHhhhccccCCCCCchhheeecccccCCCceEE
Confidence            3468996 59999999999987 77766444322110                    01111111112456899999999


Q ss_pred             EEc-C---CCeeeEEccC
Q psy88            61 QFT-A---NAGTHFWHAH   74 (75)
Q Consensus        61 ~~~-~---~~Gt~~YH~H   74 (75)
                      .|+ .   .+|+|-|=|-
T Consensus        96 ~f~~p~~~~~G~Y~f~Ct  113 (128)
T d1nwpa_          96 TFDVSKLAAGEKYGFFCS  113 (128)
T ss_dssp             EEEGGGSCTTSCEEEECC
T ss_pred             EEEecccCCCceEEEEEC
Confidence            998 3   6899999983

>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.01  E-value=6.5e-06  Score=46.77  Aligned_cols=70  Identities=11%  Similarity=0.080  Sum_probs=46.8

Q ss_pred             cccEEE-ecCCEEEEEEEeCCCCCCceEEeCCccccC---------------------CCCCCCCCcccccccCCCCEEE
Q psy88             2 LYPKNV-CEGDRVVVDVRNSMDGLENTIHWHGIHQRG---------------------TQYSDGVPFVTQCPITQGNTFR   59 (75)
Q Consensus         2 ~~~i~~-~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~---------------------~~~~DG~~~~~~~~i~pG~~~~   59 (75)
                      +..|.| +.|++|+|+|+|... .++.+=.|-.....                     .+..+.+. .....|.||++.+
T Consensus        17 ~~~i~V~k~Ge~v~l~~~N~g~-~pH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vi-~~t~~l~pGes~~   94 (128)
T d1jzga_          17 TNAITVDKSCKQFTVNLSHPGN-LPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVI-AHTKLIGSGEKDS   94 (128)
T ss_dssp             CSEEEECTTCSEEEEEEECCSS-SCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCC-EECCCBCTTCEEE
T ss_pred             cceEEEecCCCEEEEEEEeCCc-cchheeecCcccccchhHHHHHHHHHhhhhccccCCCCccchh-hcccccCCCceEE
Confidence            357899 589999999999987 77655433321100                     01111111 1245589999999


Q ss_pred             EEEc-C---CCeeeEEcc
Q psy88            60 YQFT-A---NAGTHFWHA   73 (75)
Q Consensus        60 y~~~-~---~~Gt~~YH~   73 (75)
                      ..|+ .   .+|+|-|-|
T Consensus        95 i~f~~p~~~~~G~Y~f~C  112 (128)
T d1jzga_          95 VTFDVSKLKEGEQYMFFC  112 (128)
T ss_dssp             EEEEGGGCCTTCCEEEEC
T ss_pred             EEEEeeccCCCceEEEEE
Confidence            9998 3   799999999

>d1mzya2 b.6.1.3 (A:194-371) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.87  E-value=3e-05  Score=46.26  Aligned_cols=70  Identities=17%  Similarity=0.124  Sum_probs=53.7

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCC------cccccccCCCCEEEEEEc-CCCeeeEEccCC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVP------FVTQCPITQGNTFRYQFT-ANAGTHFWHAHT   75 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~------~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H~   75 (75)
                      .+|+++.||+|.|  .|.-+...++.|.-|-..... |.+|..      .+.+..|+||+.-..+++ .+||.|-|-.|.
T Consensus        70 ~aL~AkvGEtV~~--~~~gpN~~SsfHvIGg~~D~V-~~~G~~~n~p~~~~qT~~v~~G~a~~~~~tf~~PG~Y~~VdH~  146 (178)
T d1mzya2          70 GALKAKVGDNVLF--VHSQPNRDSRPHLIGGHGDLV-WETGKFHNAPERDLETWFIRGGTAGAALYKFLQPGVYAYVNHN  146 (178)
T ss_dssp             GCEEEETTCEEEE--EEEESSSCBCEEEETCCEEEE-ETTCCTTSCCEEEESBCCBCTTEEEEEEEECCSCEEEEEEESS
T ss_pred             CCcccccCCeEEE--ecccCCCCCCcccccCccceE-ccCCccCCCCCCCceEEEecCCceeEEEEEeCCCeEEEEEccH
Confidence            3699999999854  555444889999999877644 455532      124667899999999999 999999998884

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Probab=97.86  E-value=2.9e-05  Score=43.51  Aligned_cols=59  Identities=12%  Similarity=0.069  Sum_probs=33.2

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      +..|+++.||+|++.  |...  .++.+.-.     ....+|...   ....++++  |+++ +.+|+|.|+|-
T Consensus        20 P~~itI~~GDTV~f~--n~~~--~Hnv~~~~-----~~~~~~~~~---~~~~~~~~--~s~tF~~~G~y~Y~Ct   79 (120)
T d1paza_          20 PAYIKANPGDTVTFI--PVDK--GHNVESIK-----DMIPEGAEK---FKSKINEN--YVLTVTQPGAYLVKCT   79 (120)
T ss_dssp             SSEEEECTTCEEEEE--ESSS--SCCCEECT-----TCSCTTCCC---CBCCTTCC--EEEECCSCEEEEEECT
T ss_pred             CCEEEECCCCEEEEe--eCCC--cceEeecc-----ccCcccccc---cccccCce--EEEEecCCCeEEEEEe
Confidence            457899999998654  5533  44433211     111222221   11344555  4555 77899999994

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Achromobacter cycloclastes [TaxId: 223]

Probab=97.78  E-value=3.3e-05  Score=43.52  Aligned_cols=60  Identities=13%  Similarity=0.096  Sum_probs=34.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEccC
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHAH   74 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~H   74 (75)
                      +..|++++||+|++  .|...  .+..+.-..   ..  .+|..   .....+++++++.| +.+|+|.|+|-
T Consensus        20 P~~itI~~GdTV~w--~n~~~--~~~~~~~~~---~~--p~~~~---~~~~~~~~~~s~Tf-~~~G~Y~Y~C~   79 (124)
T d1bqka_          20 PASLKVAPGDTVTF--IPTDK--GHNVETIKG---MI--PDGAE---AFKSKINENYKVTF-TAPGVYGVKCT   79 (124)
T ss_dssp             SSEEEECTTCEEEE--ECSSS--SCCCEECTT---CS--CTTCC---CCBCCTTCCEEEEC-CSCEEEEEECT
T ss_pred             CCEEEECCCCeEEE--EECCC--Ccccccccc---cC--CCccc---cccccCCccEEEec-CCCceEEEEec
Confidence            45799999999655  45533  222222111   11  12222   12355677666555 67799999994

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Thiosphaera pantotropha [TaxId: 82367]

Probab=97.74  E-value=2.1e-05  Score=44.03  Aligned_cols=59  Identities=10%  Similarity=0.008  Sum_probs=33.0

Q ss_pred             cccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEcCCCeeeEEcc
Q psy88             2 LYPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFTANAGTHFWHA   73 (75)
Q Consensus         2 ~~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~~~~Gt~~YH~   73 (75)
                      +..|+++.||+|++.  |... ..+..-..+     .. .++.   ......+++++++.| +.+|+|.|+|
T Consensus        20 P~~itI~~GdtV~f~--n~~~-~~~~~~~~~-----~~-~~~~---~~~~~~~~~~~~~tF-~~~G~Y~Y~C   78 (123)
T d1adwa_          20 PAFVRAEPGDVINFV--PTDK-SHNVEAIKE-----IL-PEGV---ESFKSKINESYTLTV-TEPGLYGVKC   78 (123)
T ss_dssp             SSEEEECTTEEEEEE--ESSS-SCCCEECTT-----SC-CTTC---CCCBCCTTCCEEEEE-CSCEEEEEEC
T ss_pred             CCEEEECCCCEEEEE--eCCC-CcceecccC-----cc-cccc---ccccccCCcceEEec-cCCCeEEEEE
Confidence            457999999997774  5543 222211111     11 1111   112355666655555 6689999999

>d1kv7a2 b.6.1.3 (A:171-335) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: multi-copper oxidase CueO
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.012  Score=33.92  Aligned_cols=63  Identities=11%  Similarity=0.081  Sum_probs=42.6

Q ss_pred             cEEEecCCEEEEEEEeCCCCCCceEEe-CCccccCCCCCCCCCcc-----cccccCCCCEEEEEEc-CCCee
Q psy88             4 PKNVCEGDRVVVDVRNSMDGLENTIHW-HGIHQRGTQYSDGVPFV-----TQCPITQGNTFRYQFT-ANAGT   68 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~~~~~~iH~-HG~~~~~~~~~DG~~~~-----~~~~i~pG~~~~y~~~-~~~Gt   68 (75)
                      ++.+ +|.++++++.|........+.+ +|..+... ..||.+..     ....+.|||+++.-+. .+.++
T Consensus        53 ~~~~-~~~~~RlR~iNa~~~~~~~~~~~~g~~~~vi-a~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~~~  122 (165)
T d1kv7a2          53 QHAA-PRGWLRLRLLNGCNARSLNFATSDNRPLYVI-ASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKP  122 (165)
T ss_dssp             EEEE-EEEEEEEEEEECCSSCCEEEEETTCCCEEEE-EETTEEEEEEEEESCEEECTTCEEEEEEEECTTCC
T ss_pred             eEec-cCcEEEEEEEEcccCceeeEEecCCCeEEEE-EeCCccccCceEeCeEEECCCCEEEEEEECCCCCc
Confidence            3444 4779999999987645556665 67654432 47886532     2455899999999998 54443

>d1gska2 b.6.1.3 (A:183-356) Spore coat protein A, CotA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Spore coat protein A, CotA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.70  E-value=0.01  Score=34.54  Aligned_cols=62  Identities=15%  Similarity=0.115  Sum_probs=43.4

Q ss_pred             cCCEEEEEEEeCCCCCCceEEe-CCccccCCCCCCCCCcc-----cccccCCCCEEEEEEc--CCCeeeEE
Q psy88             9 EGDRVVVDVRNSMDGLENTIHW-HGIHQRGTQYSDGVPFV-----TQCPITQGNTFRYQFT--ANAGTHFW   71 (75)
Q Consensus         9 ~Gd~v~i~~~N~~~~~~~~iH~-HG~~~~~~~~~DG~~~~-----~~~~i~pG~~~~y~~~--~~~Gt~~Y   71 (75)
                      ++.+++++|.|........+.+ .|..+... ..||....     ....+.|||++..-+.  +.+|..++
T Consensus        64 ~~~~~RlRliNa~~~~~~~l~~~~g~~~~vI-a~DG~~l~~P~~~~~l~l~pgeR~dvlv~~~~~~g~~~~  133 (174)
T d1gska2          64 EPRKYRFRVINASNTRTYNLSLDNGGDFIQI-GSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESII  133 (174)
T ss_dssp             CSSEEEEEEEECCSSCCEEEEETTCCCEEEE-EETTEEEEEEEEESEEEECTTCEEEEEEECGGGTTCEEE
T ss_pred             cCceEEEEEEecccCceeeEeecCCCcEEEE-EECCCcccCceEeCEEEEcCCcEEEEEEECCCCCCceEE
Confidence            5778999999998766778888 57554322 36886531     2445789999999987  44565543

>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Quinol oxidase (CyoA)
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.098  Score=29.94  Aligned_cols=57  Identities=14%  Similarity=0.001  Sum_probs=42.0

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccccccCCCCEEEEEEc-CCCeeeEEccC
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQCPITQGNTFRYQFT-ANAGTHFWHAH   74 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~-~~~Gt~~YH~H   74 (75)
                      ..|++..|+.|++.++...-  -     ||+..+..   .+     +.-+.||...+..|. +.+|+|...|.
T Consensus        27 n~l~lP~g~pV~~~ltS~DV--i-----HsF~vP~l---~~-----k~daiPG~~~~~~~~~~~~G~y~g~Ca   84 (158)
T d1cyxa_          27 NEIAFPANTPVYFKVTSNSV--M-----HSFFIPRL---GS-----QIYAMAGMQTRLHLIANEPGTYDGICA   84 (158)
T ss_dssp             SEEEEETTSCEEEEEEESSS--C-----EEEEEGGG---TE-----EEEECTTCCEEEEECCSSSEEEEEEEC
T ss_pred             eeEEeeCCCeEEEEEEcCCc--c-----hhhhhhhc---ce-----eeccCCCceeeeeeeecCCCcEEEEch
Confidence            46888999999999998742  3     45544321   11     223678999999999 99999999884

>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}

class: All beta proteins
fold: beta-clip
superfamily: Urease, beta-subunit
family: Urease, beta-subunit
domain: Urease, beta-subunit
species: Klebsiella aerogenes [TaxId: 28451]

Probab=91.88  E-value=0.21  Score=26.59  Aligned_cols=59  Identities=19%  Similarity=0.121  Sum_probs=36.9

Q ss_pred             cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .|.+++| +++++.++|..+ +|.-+=.|=.++..++  ..|     |    .|.-+...++||++++.++.
T Consensus        12 ~I~lN~gr~~~~l~V~NtGD-RpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV   82 (101)
T d1ejxb_          12 QIALNTGRATCRVVVENHGD-RPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELV   82 (101)
T ss_dssp             EEECSTTCCEEEEEEEECSS-SCEEEETTSCGGGSCTTEESCHHHHTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred             cEEEcCCCcEEEEEEEeCCC-cceeeccccChHHcCccccccHHHhcCceeCccCCCEEeeCCCCcEEEEEE
Confidence            4666666 789999999999 8876633333322211  111     1    12223455899999999887

>d2nqda1 b.1.26.1 (A:3-110) Chagasin {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ICP-like
family: ICP-like
domain: Chagasin
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.63  E-value=0.75  Score=24.26  Aligned_cols=63  Identities=17%  Similarity=0.178  Sum_probs=34.9

Q ss_pred             ccEEEecCCEEEEEEEeCCCCCCceEEeCCccccCCCCCCCCCcccc-------cccCCCCEEEEEEc-CCCee
Q psy88             3 YPKNVCEGDRVVVDVRNSMDGLENTIHWHGIHQRGTQYSDGVPFVTQ-------CPITQGNTFRYQFT-ANAGT   68 (75)
Q Consensus         3 ~~i~~~~Gd~v~i~~~N~~~~~~~~iH~HG~~~~~~~~~DG~~~~~~-------~~i~pG~~~~y~~~-~~~Gt   68 (75)
                      -+|.++.||+++|.|.=+-. ...+=.+.+..-.  .-.+|...+..       ..+..|+.+.+.|+ ..+|+
T Consensus        10 ~tI~v~~Ge~~~I~L~~NPt-TGY~W~~~~~~~~--~l~~~l~~~~~~y~p~~~~~vG~gG~~~w~f~a~~~G~   80 (108)
T d2nqda1          10 ATLTVAVGELVEIQLPSNPT-TGFAWYFEGGTKE--SPNESMFTVENKYFPPDSKLLGAGGTEHFHVTVKAAGT   80 (108)
T ss_dssp             CEEECCTTCEEEEEEEECGG-GTCEEEBTTTBSS--CSCTTTEEEEEEEECCCCSSBSCCEEEEEEEEECSSEE
T ss_pred             cEEEEeCCCEEEEEeCCCCC-CCeEEEeecCCcc--cccccceeeccceecCCCCCcCCCeEEEEEEEeccCce
Confidence            47999999999999996533 2333333222110  01232222211       12455777888888 77774

>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}

class: All beta proteins
fold: beta-clip
superfamily: Urease, beta-subunit
family: Urease, beta-subunit
domain: Urease, beta-subunit
species: Bacillus pasteurii [TaxId: 1474]

Probab=89.45  E-value=0.41  Score=26.22  Aligned_cols=59  Identities=19%  Similarity=0.250  Sum_probs=36.6

Q ss_pred             cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .|+++.| +++.|.++|..+ +|.-+=.|=.++..++  ..|     |    .|.-+...++||++++.++.
T Consensus        14 ~I~lN~gr~~~~l~V~NtGD-RpIQVGSH~HF~E~N~aL~FDR~~a~G~RLdIpaGTavRFEPG~~k~V~LV   84 (122)
T d4ubpb_          14 EIEINAGREKTTIRVSNTGD-RPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELT   84 (122)
T ss_dssp             EEETTTTSCEEEEEEEECSS-SCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred             cEEecCCCCEEEEEEEeCCC-cceeeccccChhhcCccccccHHHHhhcccCCCCCCeEEECCCCeEEEEEE
Confidence            4566666 788999999999 8876633332322211  111     1    22223455899999999887

>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Vibrio cholerae [TaxId: 666]

Probab=85.71  E-value=0.56  Score=25.64  Aligned_cols=48  Identities=21%  Similarity=0.289  Sum_probs=26.9

Q ss_pred             EEEEEEeCCCCCCc---eEEeCCccccCCC---CCCCCCcccccccCCCCEEEEEE
Q psy88            13 VVVDVRNSMDGLEN---TIHWHGIHQRGTQ---YSDGVPFVTQCPITQGNTFRYQF   62 (75)
Q Consensus        13 v~i~~~N~~~~~~~---~iH~HG~~~~~~~---~~DG~~~~~~~~i~pG~~~~y~~   62 (75)
                      -+|++.|..+ .+.   +-||.=.+.....   .-+|+-+. |--|.||++|.|.-
T Consensus        32 Y~I~I~N~~~-~~vQLlsR~W~I~d~~g~~~~V~G~GVVG~-qPvl~PGe~f~Y~S   85 (124)
T d1xvsa_          32 YLITIKNLSS-QTVQLMSRRWLITDADGKQTVVEGDGVVGE-QPRIKANDEYTYSS   85 (124)
T ss_dssp             EEEEEEECSS-SCEEEEEEEEEEEETTCCEEEEEEESBTTB-CCEECTTCEEEEEE
T ss_pred             EEEEEEeCCC-CCEEEEeeEEEEEeCCCCEEEeccCcccCC-CCCcCCCCCEEEeC
Confidence            4688889987 443   4477432221100   12333322 34479999999964

>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.40  E-value=1.1  Score=24.05  Aligned_cols=59  Identities=24%  Similarity=0.331  Sum_probs=32.7

Q ss_pred             EEEecCCEEEEEEEeCC--CCC--CceEE--eCCccccC-CCCCCCCCcccccccCCCCEEEEEEc
Q psy88             5 KNVCEGDRVVVDVRNSM--DGL--ENTIH--WHGIHQRG-TQYSDGVPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         5 i~~~~Gd~v~i~~~N~~--~~~--~~~iH--~HG~~~~~-~~~~DG~~~~~~~~i~pG~~~~y~~~   63 (75)
                      =.+++|+.+.|.+.=..  +..  .+.++  .-|+..+- ....|+-.....||+.+|+.++|.+.
T Consensus        28 C~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gi~ip~p~~~~d~C~~g~~CPl~~G~~~~y~~~   93 (130)
T d1nepa_          28 CKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNK   93 (130)
T ss_dssp             EEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEE
T ss_pred             CEeeCCCEEEEEEEEEcCcccceEEEEEEEEECCEEecccCCCCcccccCCcCCccCCceEEEEEE
Confidence            35788988887766221  101  12222  34443321 12234432224799999999999876

>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: beta-clip
superfamily: Urease, beta-subunit
family: Urease, beta-subunit
domain: Urease, beta-subunit
species: Helicobacter pylori [TaxId: 210]

Probab=84.97  E-value=0.61  Score=25.87  Aligned_cols=59  Identities=22%  Similarity=0.151  Sum_probs=36.0

Q ss_pred             cEEEecC-CEEEEEEEeCCCCCCceEEeCCccccCCC--CCC-----C----CCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEG-DRVVVDVRNSMDGLENTIHWHGIHQRGTQ--YSD-----G----VPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~G-d~v~i~~~N~~~~~~~~iH~HG~~~~~~~--~~D-----G----~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .|.++.| .++.|.++|..+ +|.-+=.|=.++..+.  ..|     |    .|.-+...+.||++++.++.
T Consensus        12 ~I~lN~gr~~~~l~V~NtGD-RpIQVGSH~HF~E~N~aL~FDR~~a~G~RLdIpaGtavRFEPG~~k~V~LV   82 (133)
T d1e9ya1          12 DITINEGKKAVSVKVKNVGD-RPVQIGSHFHFFEVNRCLDFDREKTFGKRLDIAAGTAVRFEPGEEKSVELI   82 (133)
T ss_dssp             EEETTTTCCCCEEEEEECSS-SCEEEETTSCGGGSCTTEESCGGGGTTEEECSSTTCEEEECTTCEEEEEEE
T ss_pred             cEEecCCCcEEEEEEEeCCC-cceeeccccChhhcCccccccHHHHhhcccCCCCCCeEEECCCCeEEEEEE
Confidence            4566666 678999999999 8876633332322211  111     1    12223455899999999887

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=83.27  E-value=1.9  Score=22.36  Aligned_cols=61  Identities=16%  Similarity=0.118  Sum_probs=34.8

Q ss_pred             ccEEEecCCEEEE--EEEeCCCCCCce-EEeCCccccCCCCCCCCC-cccccccCCCCEEEEEEc------CCCeeeE
Q psy88             3 YPKNVCEGDRVVV--DVRNSMDGLENT-IHWHGIHQRGTQYSDGVP-FVTQCPITQGNTFRYQFT------ANAGTHF   70 (75)
Q Consensus         3 ~~i~~~~Gd~v~i--~~~N~~~~~~~~-iH~HG~~~~~~~~~DG~~-~~~~~~i~pG~~~~y~~~------~~~Gt~~   70 (75)
                      +.+-++.|+.+.+  ++.|... .+.. +-+ -+..+     .|.. ......++||++.+..|.      -.+|+|.
T Consensus         9 p~~~v~pG~~~~~~vtVtN~g~-~~~~~~~~-~~~~P-----~GW~v~~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~   79 (103)
T d1w8oa1           9 PDVALEPGQQVTVPVAVTNQSG-IAVPKPSL-QLDAS-----PDWQVQGSVEPLMPGRQAKGQVTITVPAGTTPGRYR   79 (103)
T ss_dssp             CCEEECTTCEEEEEEEEECCSS-SCBSSCEE-EEECC-----TTSEEEEEECCBCTTCEEEEEEEEECCTTCCCEEEE
T ss_pred             cceeeCCCCeEEEEEEEEeCCC-CceeeeeE-EEcCC-----CCccccCcceeeCCCCcEEEEEEEECCCCCCCceEE
Confidence            4577889997665  5568865 2221 000 01112     2211 123446899999999998      2467774

>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Major mite allergen
species: House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]

Probab=82.38  E-value=2.4  Score=22.82  Aligned_cols=59  Identities=15%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             cEEEecCCEEEEEEEeCCC--CCCceEEeC----CccccC-CCCCCCCCcccccccCCCCEEEEEEc
Q psy88             4 PKNVCEGDRVVVDVRNSMD--GLENTIHWH----GIHQRG-TQYSDGVPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus         4 ~i~~~~Gd~v~i~~~N~~~--~~~~~iH~H----G~~~~~-~~~~DG~~~~~~~~i~pG~~~~y~~~   63 (75)
                      +=.+++|..+.+.+.=..+  ......-.+    |+..+- ....|+=.+ ..||+..|++++|.+.
T Consensus        26 PC~l~rG~~~~~~~~F~~~~d~~~l~~~v~~~~~gv~vP~p~~~~daC~~-~~CPl~~G~~~~y~~~   91 (129)
T d1xwva_          26 PCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHF-MKCPLVKGQQYDAKYT   91 (129)
T ss_dssp             CEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGT-SCSSBCTTCEEEEEEE
T ss_pred             CCEEECCCeEEEEEEEEcCcccceEEEEEEEEECCEEecCcccCcCCCCC-ccCCccCCeEEEEEEE
Confidence            4467888888777662211  112222222    333221 122344333 3799999999999876

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

Probab=82.33  E-value=0.71  Score=25.47  Aligned_cols=49  Identities=18%  Similarity=0.247  Sum_probs=26.2

Q ss_pred             EEEEEEeCCCCCCc---eEEeCCccccCCC---CCCCCCcccccccCCCCEEEEEEc
Q psy88            13 VVVDVRNSMDGLEN---TIHWHGIHQRGTQ---YSDGVPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus        13 v~i~~~N~~~~~~~---~iH~HG~~~~~~~---~~DG~~~~~~~~i~pG~~~~y~~~   63 (75)
                      -.|++.|..+ .+.   +-||.=.+.....   .-+|+-+ .|--|.||++|.|.--
T Consensus        30 Y~ItI~N~~~-~~vQLlsR~W~I~d~~G~~~eV~G~GVVG-~qPvl~PGe~f~Y~S~   84 (132)
T d1tzaa_          30 YTITIINLGE-QAAKLETRHWIITDANGKTSEVQGAGVVG-ETPTIPPNTAYQYTSG   84 (132)
T ss_dssp             EEEEEEECSS-SCEEEEEEEEEEEETTSCEEEEEEESBTT-BCCEECTTEEEEEEEE
T ss_pred             EEEEEEeCCC-CCEEEEeeEEEEECCCCCEEEEeCCCccC-CcCccCCCCCEEEeCC
Confidence            3678889877 443   4466433222110   0123322 1334789999999643

>d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: beta-Galactosidase/glucuronidase domain
family: beta-Galactosidase/glucuronidase domain
domain: Exochitosanase CsxA, domains 2, 4 and 5
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=80.07  E-value=3  Score=22.48  Aligned_cols=47  Identities=15%  Similarity=0.174  Sum_probs=27.0

Q ss_pred             EEEEEEEeCCCCC--CceEEeCCc-----cccCCCCCCCCCcccccccCCCCEEEEEEc
Q psy88            12 RVVVDVRNSMDGL--ENTIHWHGI-----HQRGTQYSDGVPFVTQCPITQGNTFRYQFT   63 (75)
Q Consensus        12 ~v~i~~~N~~~~~--~~~iH~HG~-----~~~~~~~~DG~~~~~~~~i~pG~~~~y~~~   63 (75)
                      .++|++.|..+..  ..-+++.=+     ......|+|+  .++   +.|||+++..+.
T Consensus        41 ~v~vtl~N~s~~~~pAff~rL~l~d~~g~~IlPv~~sDN--Y~s---L~PGE~~~v~i~   94 (122)
T d2vzsa2          41 TTTVTLKNTSGGRLPAFYVDSKVVDSAGKPVLPVEWNDN--AVS---LWPGETTTLTAK   94 (122)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEEECTTSCBCSSCEESSC--SEE---ECTTCEEEEEEE
T ss_pred             EEEEEEEcCCCCccEEEEEEEEeEcCCCCEecceEeeCC--eEE---EcCCCeEEEEEE
Confidence            6899999986621  223332222     1222234452  333   789999999886