Psyllid ID: psy8922

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
MIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIRTTTRPTCTKPGIRTITSTACTEPGIRTITRSTCTKPGIRTITKPLLVPLALSRELEPLLVPLALSRELEPLLVPLALSRELEPLLVPLALRRELELLLVVLELSRELEPSLALSRELEPLLVPPTLSRELEPLLEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSKNSFTL
cccccccccEEEEEEcccccccHHHHccEEEEEccHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHccEEEEEEccHHHHHHHHccccccccccccccccEEEccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHccccccccccEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccEEEc
ccccEEEEEEEEEEEccccccccHHHEEEEEEEEEHHHHHHHHcccccHHHcccccccHHHHcccccccccccHcccccEEEEEEccccccEEEEccccccccccEEEEccccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccHcccccccccccccccccccccccccccccHHccccEEEEEEEEEEEccccccccHHHEEEEEEEEEHHHcccccccccccccccccccHHccccEEEEEEEEEEEccccccccHHHEEEEEEEEEHHHHHHHHHHcccHHHcccccEEEEEEcccccccccccccccEEEEEEccccHHHHcHHHHHHHHHHHHHccccHHHHHHEEEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccEEEEHHHHHHcccccccccEEc
mikhplhnkwtlwyfendknkgweenqrEITSFSTVEDFWWYFRSIdnekelsqmssdqsyyrprtraitsstrtepgirtttrptctkpgirtitstactepgirtitrstctkpgirtitkpllvplalsreleplLVPLALSRELEPLLVPLALSRELEPLLVPLALRRELELLLVVLELSRELepslalsrelepllvpptlsrelepllekeqqpqenttttavttpeveselmikhplhnkwtlwyfendknkgweenQREITSFstekeqqpqenttttavttpeveselmikhplhnkwtlwyfendknkgweenqrEITSFSTVEDFWCVFNHikqasdlrvgcdyslfksgirpmwedetnknggrWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVrakgdkigiwtvdasrsksdgILSIGRKIKERLGIGAEYQIVYQShrdtasrtsstsknsftl
mikhplhnkwtlwyfendknkgweeNQREItsfstvedFWWYFRSIdnekelsqmssdqsyyrprtraitsstrtepgirtttrptctkpgirtitstactepgirtitrstctkpgirtiTKPLLVPLALSRELEPLLVPLALSRELEPLLVPLALSRELEPLLVPLALRRELELLLVVLELSRELEpslalsrelepllvpPTLSRELEPLlekeqqpqenttttavttpeveSELMIKHPLHNKWTLWYFENDKNKGWEENQREITSfstekeqqpqenttttavttpeVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHikqasdlrvgCDYSLFKSgirpmwedetnknggRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVrakgdkigiwtvdasrsksdgilSIGRKIKERLGIGAEYQIVYqshrdtasrtsstsknsftl
MIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIRTTTRPTCTKPGIRTITSTACTEPGIRTITRSTCTKPGIRTITKPLLVPLALSRELEPLLVPLALSRELEPLLVPLALSRelepllvplalrrelelllvvlelsrelepslalsrelepllvPPTLSRelepllekeqqpqeNttttavttPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTEKEQQPQENttttavttPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSKNSFTL
*****LHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSI****************************************CTKPGIRTITSTACTEPGIRTITRSTCTKPGIRTITKPLLVPLALSRELEPLLVPLALSRELEPLLVPLALSRELEPLLVPLALRRELELLLVVLELSREL**************************************************LMIKHPLHNKWTLWYFEND****************************************LMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQ*******************
MIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIRTTTRPTCTKPGIRTITSTACT*************************************************************************************************************************************************KWTL***********************************************MIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQ****************FTL
MIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKE*************RTRAITSSTRTEPGIRTTTRPTCTKPGIRTITSTACTEPGIRTITRSTCTKPGIRTITKPLLVPLALSRELEPLLVPLALSRELEPLLVPLALSRELEPLLVPLALRRELELLLVVLELSRELEPSLALSRELEPLLVPPTLSRELEPLLE**************TTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQRE********************VTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQ*******************
MIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIRTTTRPTCTKPGIRTITSTACTEPGIRTITRSTCTKPGIRTITKPLLVPLALSRELEPLLVPLALSRELEPLLVPLALSRELEPLLVPLALRRELELLLVVLELSRELEPSLALSRELEPLLVPPT**************************PEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTEKEQ**************EVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSST*******
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MIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWWYFRSIDNEKELSQMSSDQSYYRPRTRAITSSTRTEPGIRTTTRPTCTKPGIRTITSTACTEPGIRTITRSTCTKPGIRTITKPLLVPLALSRELEPLLVPLALSRELEPLLVPLALSRELEPLLVPLALRRELELLLVVLELSRELEPSLALSRELEPLLVPPTLSRELEPLLEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSKNSFTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
P63074217 Eukaryotic translation in yes N/A 0.385 0.857 0.617 6e-67
P63073217 Eukaryotic translation in yes N/A 0.385 0.857 0.617 6e-67
Q9DFS6215 Eukaryotic translation in no N/A 0.391 0.879 0.602 7e-67
P29338217 Eukaryotic translation in yes N/A 0.385 0.857 0.617 7e-67
P06730217 Eukaryotic translation in no N/A 0.385 0.857 0.611 2e-66
P48597213 Eukaryotic translation in N/A N/A 0.426 0.967 0.547 3e-66
Q9N0T5217 Eukaryotic translation in yes N/A 0.385 0.857 0.606 5e-66
O77210215 Eukaryotic translation in N/A N/A 0.389 0.874 0.552 2e-61
A6NMX2242 Eukaryotic translation in no N/A 0.387 0.772 0.531 2e-59
Q9PW28214 Eukaryotic translation in no N/A 0.385 0.869 0.547 3e-59
>sp|P63074|IF4E_RAT Eukaryotic translation initiation factor 4E OS=Rattus norvegicus GN=Eif4e PE=1 SV=1 Back     alignment and function desciption
 Score =  255 bits (651), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 116/188 (61%), Positives = 145/188 (77%), Gaps = 2/188 (1%)

Query: 296 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDY 355
           E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW ++NHI+ +S+L  GCDY
Sbjct: 32  EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 91

Query: 356 SLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICG 415
           SLFK GI PMWEDE NK GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CG
Sbjct: 92  SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 151

Query: 416 AVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSS 475
           AVVNVRAKGDKI IWT +      D +  IGR  KERLG+  +  I YQSH DTA+++ S
Sbjct: 152 AVVNVRAKGDKIAIWTTEC--ENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGS 209

Query: 476 TSKNSFTL 483
           T+KN F +
Sbjct: 210 TTKNRFVV 217
Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates the binding to the mRNA cap (By similarity). Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. May play an important role in spermatogenesis through translational regulation of stage-specific mRNAs during germ cell development.
Rattus norvegicus (taxid: 10116)
>sp|P63073|IF4E_MOUSE Eukaryotic translation initiation factor 4E OS=Mus musculus GN=Eif4e PE=1 SV=1 Back     alignment and function description
>sp|Q9DFS6|IF4EA_DANRE Eukaryotic translation initiation factor 4E-1A OS=Danio rerio GN=eif4e1a PE=1 SV=1 Back     alignment and function description
>sp|P29338|IF4E_RABIT Eukaryotic translation initiation factor 4E OS=Oryctolagus cuniculus GN=EIF4E PE=1 SV=1 Back     alignment and function description
>sp|P06730|IF4E_HUMAN Eukaryotic translation initiation factor 4E OS=Homo sapiens GN=EIF4E PE=1 SV=2 Back     alignment and function description
>sp|P48597|IF4E_XENLA Eukaryotic translation initiation factor 4E OS=Xenopus laevis GN=eif4e PE=1 SV=1 Back     alignment and function description
>sp|Q9N0T5|IF4E_BOVIN Eukaryotic translation initiation factor 4E OS=Bos taurus GN=EIF4E PE=2 SV=2 Back     alignment and function description
>sp|O77210|IF4E_APLCA Eukaryotic translation initiation factor 4E OS=Aplysia californica PE=1 SV=1 Back     alignment and function description
>sp|A6NMX2|I4E1B_HUMAN Eukaryotic translation initiation factor 4E type 1B OS=Homo sapiens GN=EIF4E1B PE=2 SV=3 Back     alignment and function description
>sp|Q9PW28|IF4EB_DANRE Eukaryotic translation initiation factor 4E-1B OS=Danio rerio GN=eif4e1b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
307205416320 Eukaryotic translation initiation factor 0.455 0.687 0.585 9e-74
307189344214 Eukaryotic translation initiation factor 0.436 0.985 0.601 2e-71
332017990214 Eukaryotic translation initiation factor 0.438 0.990 0.595 1e-70
383862752213 PREDICTED: eukaryotic translation initia 0.403 0.915 0.609 1e-69
350410875213 PREDICTED: eukaryotic translation initia 0.403 0.915 0.598 2e-68
110764913213 PREDICTED: eukaryotic translation initia 0.403 0.915 0.588 5e-68
321474832185 hypothetical protein DAPPUDRAFT_98425 [D 0.383 1.0 0.620 6e-68
363733928411 PREDICTED: eukaryotic translation initia 0.422 0.496 0.594 1e-67
327281681217 PREDICTED: eukaryotic translation initia 0.434 0.967 0.575 4e-67
326919063224 PREDICTED: eukaryotic translation initia 0.422 0.910 0.594 8e-67
>gi|307205416|gb|EFN83757.1| Eukaryotic translation initiation factor 4E [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 168/222 (75%), Gaps = 2/222 (0%)

Query: 262 EENQREITSFSTEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWE 321
           E   R   + ST +E +  +   T AV + E   E +IKHPL N WTLWY+E DK+K WE
Sbjct: 101 ERPHRRDMATSTTEEIEEIDRKQTEAVNSGEFPPEYLIKHPLQNTWTLWYYEPDKSKSWE 160

Query: 322 ENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLISL 381
           E+QREITSF T EDFW ++NHIK AS+LR GCDYS+FK GIRPMWEDE NK GGRWLI+L
Sbjct: 161 ESQREITSFDTAEDFWSLYNHIKTASELRQGCDYSMFKQGIRPMWEDEQNKCGGRWLINL 220

Query: 382 DRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDG 441
           D+KQR ++L+ FWLEILLC+IGEAF++YS+D+CGAVVN+R KGDKIG+WT +A  +  D 
Sbjct: 221 DKKQRFADLDNFWLEILLCMIGEAFNEYSDDVCGAVVNIRPKGDKIGVWTSNA--NSEDS 278

Query: 442 ILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSKNSFTL 483
           ++ IGRK+KERL I  +  + YQ+H+DT  +  S +KN++TL
Sbjct: 279 VMEIGRKLKERLRITPKMSMGYQAHKDTMVKAGSQTKNTYTL 320

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307189344|gb|EFN73765.1| Eukaryotic translation initiation factor 4E [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332017990|gb|EGI58627.1| Eukaryotic translation initiation factor 4E [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383862752|ref|XP_003706847.1| PREDICTED: eukaryotic translation initiation factor 4E-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350410875|ref|XP_003489164.1| PREDICTED: eukaryotic translation initiation factor 4E-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|110764913|ref|XP_624290.2| PREDICTED: eukaryotic translation initiation factor 4E [Apis mellifera] gi|380023863|ref|XP_003695730.1| PREDICTED: eukaryotic translation initiation factor 4E-like [Apis florea] Back     alignment and taxonomy information
>gi|321474832|gb|EFX85796.1| hypothetical protein DAPPUDRAFT_98425 [Daphnia pulex] Back     alignment and taxonomy information
>gi|363733928|ref|XP_420655.3| PREDICTED: eukaryotic translation initiation factor 4E-1A [Gallus gallus] Back     alignment and taxonomy information
>gi|327281681|ref|XP_003225575.1| PREDICTED: eukaryotic translation initiation factor 4E-like isoform 1 [Anolis carolinensis] Back     alignment and taxonomy information
>gi|326919063|ref|XP_003205803.1| PREDICTED: eukaryotic translation initiation factor 4E-like [Meleagris gallopavo] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
UNIPROTKB|D6RBW1245 EIF4E "Eukaryotic translation 0.467 0.922 0.549 2.5e-65
UNIPROTKB|F1NI97215 EIF4E "Uncharacterized protein 0.432 0.972 0.575 5.2e-65
UNIPROTKB|Q4R7N0240 Q4R7N0 "Testis cDNA, clone: Qt 0.447 0.9 0.544 3.7e-64
UNIPROTKB|F1S0B9217 EIF4E "Uncharacterized protein 0.385 0.857 0.617 4.7e-64
UNIPROTKB|P29338217 EIF4E "Eukaryotic translation 0.385 0.857 0.617 4.7e-64
MGI|MGI:95305217 Eif4e "eukaryotic translation 0.385 0.857 0.617 4.7e-64
RGD|69647217 Eif4e "eukaryotic translation 0.385 0.857 0.617 4.7e-64
ZFIN|ZDB-GENE-041121-14216 eif4eb "eukaryotic translation 0.391 0.875 0.607 9.7e-64
ZFIN|ZDB-GENE-040413-1215 eif4ea "eukaryotic translation 0.391 0.879 0.602 1.2e-63
UNIPROTKB|P06730217 EIF4E "Eukaryotic translation 0.385 0.857 0.611 1.2e-63
UNIPROTKB|D6RBW1 EIF4E "Eukaryotic translation initiation factor 4E" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 127/231 (54%), Positives = 160/231 (69%)

Query:   254 ENDKNKGWEENQREITSFSTEKEQQPQENXXXXXXXXPEVES-ELMIKHPLHNKWTLWYF 312
             END  K   E+ RE  S  T     P            EV + E  IKHPL N+W LW+F
Sbjct:    19 ENDAIKKQAESLRE--SQETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFF 76

Query:   313 ENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNK 372
             +NDK+K W+ N R I+ F TVEDFW ++NHI+ +S+L  GCDYSLFK GI PMWEDE NK
Sbjct:    77 KNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNK 136

Query:   373 NGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTV 432
              GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CGAVVNVRAKGDKI IWT 
Sbjct:   137 RGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTT 196

Query:   433 DASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSKNSFTL 483
             +    ++  +  IGR  KERLG+  +  I YQSH DTA+++ ST+KN F +
Sbjct:   197 ECENREA--VTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV 245
GO:0005737 "cytoplasm" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=IEA
UNIPROTKB|F1NI97 EIF4E "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R7N0 Q4R7N0 "Testis cDNA, clone: QtsA-14777, similar to human eukaryotic translation initiation factor 4E (EIF4E),mRNA, RefSeq: NM_001968.1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|F1S0B9 EIF4E "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P29338 EIF4E "Eukaryotic translation initiation factor 4E" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
MGI|MGI:95305 Eif4e "eukaryotic translation initiation factor 4E" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|69647 Eif4e "eukaryotic translation initiation factor 4E" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041121-14 eif4eb "eukaryotic translation initiation factor 4eb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040413-1 eif4ea "eukaryotic translation initiation factor 4ea" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P06730 EIF4E "Eukaryotic translation initiation factor 4E" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9N0T5IF4E_BOVINNo assigned EC number0.60630.38500.8571yesN/A
P63074IF4E_RATNo assigned EC number0.61700.38500.8571yesN/A
P63073IF4E_MOUSENo assigned EC number0.61700.38500.8571yesN/A
P29338IF4E_RABITNo assigned EC number0.61700.38500.8571yesN/A
P48598IF4E_DROMENo assigned EC number0.50480.41820.7799yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
pfam01652162 pfam01652, IF4E, Eukaryotic initiation factor 4E 3e-75
COG5053217 COG5053, CDC33, Translation initiation factor 4E ( 1e-41
pfam01652162 pfam01652, IF4E, Eukaryotic initiation factor 4E 5e-14
PTZ00040233 PTZ00040, PTZ00040, translation initiation factor 2e-13
COG5053217 COG5053, CDC33, Translation initiation factor 4E ( 1e-09
pfam01652162 pfam01652, IF4E, Eukaryotic initiation factor 4E 1e-06
>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E Back     alignment and domain information 
 Score =  233 bits (596), Expect = 3e-75
 Identities = 85/168 (50%), Positives = 113/168 (67%), Gaps = 9/168 (5%)

Query: 302 PLHNKWTLWYF---ENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLF 358
           PL NKWTLWY      DK+K +E+N + I +F TVEDFW ++N+I + S L +G DY LF
Sbjct: 1   PLQNKWTLWYDRRPPGDKSKDYEDNLKPIGTFDTVEDFWRLYNNIPRPSKLPLGSDYHLF 60

Query: 359 KSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVV 418
           K GI+PMWED  NKNGG+W I L + Q       FW E+LL LIGE FD+ S++ICG V+
Sbjct: 61  KKGIKPMWEDPANKNGGKWTIRLPKSQNLDR---FWEELLLALIGEQFDE-SDEICGVVL 116

Query: 419 NVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSH 466
           +VR K DKI +WT +A  S  + +L IG+K+KE LG+    +I Y+ H
Sbjct: 117 SVRKKEDKISVWTKNA--SNEEALLRIGKKLKEVLGLPPNDKIEYKPH 162

Length = 162
>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E Back     alignment and domain information
>gnl|CDD|240238 PTZ00040, PTZ00040, translation initiation factor E4; Provisional Back     alignment and domain information
>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
KOG1670|consensus212 100.0
KOG1669|consensus208 100.0
PF01652165 IF4E: Eukaryotic initiation factor 4E; InterPro: I 100.0
PTZ00040233 translation initiation factor E4; Provisional 100.0
COG5053217 CDC33 Translation initiation factor 4E (eIF-4E) [T 100.0
KOG1670|consensus212 99.96
PTZ00040233 translation initiation factor E4; Provisional 99.93
KOG1669|consensus208 99.92
PF01652165 IF4E: Eukaryotic initiation factor 4E; InterPro: I 99.91
COG5053217 CDC33 Translation initiation factor 4E (eIF-4E) [T 99.85
PF08939243 DUF1917: Domain of unknown function (DUF1917); Int 94.39
>KOG1670|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.9e-57  Score=430.56  Aligned_cols=182  Identities=55%  Similarity=1.063  Sum_probs=175.2

Q ss_pred             ccccCCCCcceEEEEEeCCCccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCCcE
Q psy8922         297 LMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGR  376 (483)
Q Consensus       297 ~~~~HpLq~~WTfWy~~~~~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nGGr  376 (483)
                      ...+|||++.|||||.+++++.+|++.|+.|++|+|||+||++|++|++||+|+.+|||++||+||+||||||+|+||||
T Consensus        31 ~~~~hpL~~~WTlW~l~~d~~ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~GGr  110 (212)
T KOG1670|consen   31 NHIKHPLQNNWTLWFLKNDRNKSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKNGGR  110 (212)
T ss_pred             cccccccccceeEEeecCCccccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccCCCe
Confidence            34589999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCC
Q psy8922         377 WLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIG  456 (483)
Q Consensus       377 wiiri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~L~  456 (483)
                      |.|.++++ +++.+|++|.++|||+|||+|+ ++++|||+|+++|+++++||||++++  +|++.+.+||..+|++|+++
T Consensus       111 W~~~~~k~-~k~~lD~~WL~tLlalIGE~fd-~~deICGaV~NiR~k~~KISvWT~~~--~ne~~~l~IG~~~Ke~L~~~  186 (212)
T KOG1670|consen  111 WLITVPKS-GKAELDELWLETLLALIGEQFD-HSDEICGAVVNIRGKGDKISVWTKNA--GNEEAVLRIGRVLKEVLGLP  186 (212)
T ss_pred             EEEEecCc-chhhHHHHHHHHHHHHHhhhcc-ccccceeEEEEeccCCceEEEEecCC--CchHHHHHHHHHHHHHhCCC
Confidence            99999987 5678999999999999999998 79999999999999999999999999  89999999999999999998


Q ss_pred             CcceEEEEecccccccCCCCCcceeEC
Q psy8922         457 AEYQIVYQSHRDTASRTSSTSKNSFTL  483 (483)
Q Consensus       457 ~~~~I~YksH~~s~~~~gs~~k~~y~~  483 (483)
                      + .+|.|..|+++++++||..|++|++
T Consensus       187 ~-~~i~y~~H~ds~~k~~s~~K~~~tv  212 (212)
T KOG1670|consen  187 R-DVIGYQLHKDSSKKSGSTAKNRYTV  212 (212)
T ss_pred             c-ceEEEEechhhHhhcCCcccceecC
Confidence            7 7899999999999999999999986

>KOG1669|consensus Back     alignment and domain information
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs Back     alignment and domain information
>PTZ00040 translation initiation factor E4; Provisional Back     alignment and domain information
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1670|consensus Back     alignment and domain information
>PTZ00040 translation initiation factor E4; Provisional Back     alignment and domain information
>KOG1669|consensus Back     alignment and domain information
>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs Back     alignment and domain information
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
1ej1_A190 Cocrystal Structure Of The Messenger Rna 5' Cap-Bin 4e-67
4dt6_A240 Co-Crystal Structure Of Eif4e With Inhibitor Length 5e-67
1ipb_A217 Crystal Structure Of Eukaryotic Initiation Factor 4 6e-67
1wkw_A191 Crystal Structure Of The Ternary Complex Of Eif4e-M 1e-66
2w97_B217 Crystal Structure Of Eif4e Bound To Glycerol And Ei 3e-66
4axg_A248 Structure Of Eif4e-Cup Complex Length = 248 3e-57
3m93_A189 Complex Crystal Structure Of Ascaris Suum Eif4e-3 W 6e-49
2idv_A177 Crystal Structure Of Wheat C113s Mutant Eif4e Bound 7e-32
2idr_A177 Crystal Structure Of Translation Initiation Factor 2e-31
3hxg_A189 Crystal Structure Of Schistsome Eif4e Complexed Wit 3e-31
1ap8_A213 Translation Initiation Factor Eif4e In Complex With 5e-30
2wmc_A178 Crystal Structure Of Eukaryotic Initiation Factor 4 3e-29
1rf8_A213 Solution Structure Of The Yeast Translation Initiat 3e-28
2jgb_A195 Structure Of Human Eif4e Homologous Protein 4ehp Wi 4e-26
4b6v_A207 The Third Member Of The Eif4e Family Represses Gene 2e-19
>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding Protein (Eif4e) Bound To 7-Methyl-Gdp Length = 190 Back     alignment and structure 
Iteration: 1

 Score =  252 bits (643), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 116/188 (61%), Positives = 145/188 (77%), Gaps = 2/188 (1%)
Query: 296 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDY 355
           E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW ++NHI+ +S+L  GCDY
Sbjct: 5   EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 64
Query: 356 SLFKSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICG 415
           SLFK GI PMWEDE NK GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CG
Sbjct: 65  SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 124
Query: 416 AVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSS 475
           AVVNVRAKGDKI IWT +      D +  IGR  KERLG+  +  I YQSH DTA+++ S
Sbjct: 125 AVVNVRAKGDKIAIWTTEC--ENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGS 182
Query: 476 TSKNSFTL 483
           T+KN F +
Sbjct: 183 TTKNRFVV 190
>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor Length = 240 Back     alignment and structure
>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e Complexed With 7-methyl Gpppa Length = 217 Back     alignment and structure
>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa- 4ebp1 Peptide Length = 191 Back     alignment and structure
>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1 Peptide Length = 217 Back     alignment and structure
>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex Length = 248 Back     alignment and structure
>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g Cap Length = 189 Back     alignment and structure
>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7- Methyl-Gdp Length = 177 Back     alignment and structure
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e From Wheat Length = 177 Back     alignment and structure
>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With M7gpppa And 4e-Bp Length = 189 Back     alignment and structure
>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp, Nmr, 20 Structures Length = 213 Back     alignment and structure
>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From Pisum Sativum Length = 178 Back     alignment and structure
>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation Factor Eif4e In Complex With M7gdp And Eif4gi Residues 393 To 490 Length = 213 Back     alignment and structure
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With M7gtp Length = 195 Back     alignment and structure
>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene Expression Via A Novel Mode Of Recognition Of The Methyl-7 Guanosine Cap Moiety Length = 207 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3m94_A189 Translation initiation factor 4E; EIF4E, berkeley 2e-67
3m94_A189 Translation initiation factor 4E; EIF4E, berkeley 2e-13
3m94_A189 Translation initiation factor 4E; EIF4E, berkeley 7e-09
1l8b_A190 Eukaryotic translation initiation factor 4E; eukar 5e-67
1l8b_A190 Eukaryotic translation initiation factor 4E; eukar 2e-12
1ipb_A217 Eukaryotic translation initiation factor 4E; prote 2e-65
1ipb_A217 Eukaryotic translation initiation factor 4E; prote 1e-11
1ipb_A217 Eukaryotic translation initiation factor 4E; prote 4e-08
3hxi_A189 Eukaryotic translation initiation 4E; protein-mRNA 4e-63
3hxi_A189 Eukaryotic translation initiation 4E; protein-mRNA 5e-14
3hxi_A189 Eukaryotic translation initiation 4E; protein-mRNA 2e-08
2idr_A177 Eukaryotic translation initiation factor 4E-1; euk 8e-60
2idr_A177 Eukaryotic translation initiation factor 4E-1; euk 1e-11
2idr_A177 Eukaryotic translation initiation factor 4E-1; euk 6e-06
1ap8_A213 Translation initiation factor EIF4E; RNA CAP; HET: 4e-59
1ap8_A213 Translation initiation factor EIF4E; RNA CAP; HET: 4e-11
2jgb_A195 Eukaryotic translation initiation factor 4E type 2 2e-54
2jgb_A195 Eukaryotic translation initiation factor 4E type 2 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189 Back     alignment and structure
 Score =  213 bits (543), Expect = 2e-67
 Identities = 89/185 (48%), Positives = 125/185 (67%), Gaps = 2/185 (1%)

Query: 299 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLF 358
           ++HPL   W LWY + D++K WE+  +++  F TVEDFW ++NHI+ AS L  G DY LF
Sbjct: 1   MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLF 60

Query: 359 KSGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVV 418
           K GI+PMWEDE N  GGRWL+ +D+++R+  L+ +WLE+L+ +IGE F+D  E ICGAVV
Sbjct: 61  KEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVV 120

Query: 419 NVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSK 478
           NVR KGDK+ +WT D+   K D  L IG+ +K +L I     I Y+ H+D++ RT S  K
Sbjct: 121 NVRQKGDKVSLWTRDS--LKDDVNLRIGQILKAKLEIPDTEPIRYEVHKDSSVRTGSMVK 178

Query: 479 NSFTL 483
               +
Sbjct: 179 PRIVI 183
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189 Back     alignment and structure
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189 Back     alignment and structure
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190 Back     alignment and structure
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190 Back     alignment and structure
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217 Back     alignment and structure
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217 Back     alignment and structure
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217 Back     alignment and structure
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189 Back     alignment and structure
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189 Back     alignment and structure
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189 Back     alignment and structure
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177 Back     alignment and structure
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177 Back     alignment and structure
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177 Back     alignment and structure
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213 Back     alignment and structure
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213 Back     alignment and structure
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195 Back     alignment and structure
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
3m94_A189 Translation initiation factor 4E; EIF4E, berkeley 100.0
1l8b_A190 Eukaryotic translation initiation factor 4E; eukar 100.0
1ipb_A217 Eukaryotic translation initiation factor 4E; prote 100.0
3hxi_A189 Eukaryotic translation initiation 4E; protein-mRNA 100.0
1ap8_A213 Translation initiation factor EIF4E; RNA CAP; HET: 100.0
2idr_A177 Eukaryotic translation initiation factor 4E-1; euk 100.0
4axg_A248 Eukaryotic translation initiation factor 4E; 4E-BP 100.0
2jgb_A195 Eukaryotic translation initiation factor 4E type 2 100.0
3m94_A189 Translation initiation factor 4E; EIF4E, berkeley 99.96
1l8b_A190 Eukaryotic translation initiation factor 4E; eukar 99.96
2idr_A177 Eukaryotic translation initiation factor 4E-1; euk 99.95
1ipb_A217 Eukaryotic translation initiation factor 4E; prote 99.95
3hxi_A189 Eukaryotic translation initiation 4E; protein-mRNA 99.95
2jgb_A195 Eukaryotic translation initiation factor 4E type 2 99.95
1ap8_A213 Translation initiation factor EIF4E; RNA CAP; HET: 99.95
4axg_A248 Eukaryotic translation initiation factor 4E; 4E-BP 99.94
1ztp_A251 Basophilic leukemia expressed protein BLES03; HS.4 99.36
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A* Back     alignment and structure
Probab=100.00  E-value=3.3e-58  Score=434.67  Aligned_cols=183  Identities=49%  Similarity=0.980  Sum_probs=170.6

Q ss_pred             ccCCCCcceEEEEEeCCCccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCCcEEE
Q psy8922         299 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWL  378 (483)
Q Consensus       299 ~~HpLq~~WTfWy~~~~~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nGGrwi  378 (483)
                      ++|||+++|||||+..+++.+|+++|++|++|+|||+||++|+||++||+|+.+++|||||+||+||||||+|++||+|+
T Consensus         1 ~~HpL~~~Wt~W~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GGkw~   80 (189)
T 3m94_A            1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGGRWL   80 (189)
T ss_dssp             CCCEEEEEEEEEEECCCSSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCEEEE
T ss_pred             CCCCCCCcEEEEEECCCCccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCCEEE
Confidence            47999999999999988899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCCc
Q psy8922         379 ISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAE  458 (483)
Q Consensus       379 iri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~L~~~  458 (483)
                      |+++|..+++.+|++|++|||++|||+|++.+++|||||||+|+++++|+||++++  ++++.+..|++.||++|+++++
T Consensus        81 i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~--~~~~~~~~Ig~~lk~~L~l~~~  158 (189)
T 3m94_A           81 VVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDS--LKDDVNLRIGQILKAKLEIPDT  158 (189)
T ss_dssp             EEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCT--TCHHHHHHHHHHHHHHHTCCTT
T ss_pred             EEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCC--CCHHHHHHHHHHHHHHhCcCCC
Confidence            99998655568999999999999999997678999999999999999999999999  7889999999999999999999


Q ss_pred             ceEEEEecccccccCCCCCcceeEC
Q psy8922         459 YQIVYQSHRDTASRTSSTSKNSFTL  483 (483)
Q Consensus       459 ~~I~YksH~~s~~~~gs~~k~~y~~  483 (483)
                      ..|+|++|+++++++||++|++|+|
T Consensus       159 ~~i~y~~H~d~~~~~~s~~k~~~~v  183 (189)
T 3m94_A          159 EPIRYEVHKDSSVRTGSMVKPRIVI  183 (189)
T ss_dssp             SCEEEEECC-----CCSCCCCSEEE
T ss_pred             CEEEEEEchHhhhccCCCCceEEEE
Confidence            9999999999999999999999986
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Back     alignment and structure
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Back     alignment and structure
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A* Back     alignment and structure
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Back     alignment and structure
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Back     alignment and structure
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster} Back     alignment and structure
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Back     alignment and structure
>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A* Back     alignment and structure
>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Back     alignment and structure
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Back     alignment and structure
>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Back     alignment and structure
>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A* Back     alignment and structure
>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Back     alignment and structure
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Back     alignment and structure
>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster} Back     alignment and structure
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 483
d1l8ba_182 d.86.1.1 (A:) Translation initiation factor eIF4e 1e-72
d1l8ba_182 d.86.1.1 (A:) Translation initiation factor eIF4e 3e-15
d1l8ba_182 d.86.1.1 (A:) Translation initiation factor eIF4e 1e-08
d1ap8a_213 d.86.1.1 (A:) Translation initiation factor eIF4e 9e-62
d1ap8a_213 d.86.1.1 (A:) Translation initiation factor eIF4e 1e-13
d1ap8a_213 d.86.1.1 (A:) Translation initiation factor eIF4e 1e-09
>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  225 bits (575), Expect = 1e-72
 Identities = 114/183 (62%), Positives = 142/183 (77%), Gaps = 2/183 (1%)

Query: 300 KHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFK 359
           KHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW ++NHI+ +S+L  GCDYSLFK
Sbjct: 1   KHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFK 60

Query: 360 SGIRPMWEDETNKNGGRWLISLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVN 419
            GI PMWEDE NK GGRWLI+L+++QR S+L+ FWLE LLCLIGE+FDDYS+D+CGAVVN
Sbjct: 61  DGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVN 120

Query: 420 VRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEYQIVYQSHRDTASRTSSTSKN 479
           VRAKGDKI IWT +      D +  IGR  KERLG+  +  I YQSH DTA+++ ST+KN
Sbjct: 121 VRAKGDKIAIWTTEC--ENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKN 178

Query: 480 SFT 482
            F 
Sbjct: 179 RFV 181
>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182 Back     information, alignment and structure
>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182 Back     information, alignment and structure
>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d1l8ba_182 Translation initiation factor eIF4e {Mouse (Mus mu 100.0
d1ap8a_213 Translation initiation factor eIF4e {Baker's yeast 100.0
d1l8ba_182 Translation initiation factor eIF4e {Mouse (Mus mu 99.92
d1ap8a_213 Translation initiation factor eIF4e {Baker's yeast 99.92
d1ztpa1234 Basophilic leukemia expressed protein BLES03 {Huma 89.81
>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-52  Score=391.10  Aligned_cols=182  Identities=63%  Similarity=1.188  Sum_probs=168.6

Q ss_pred             cCCCCcceEEEEEeCCCccchhhcceeeeeeecHHHHHHHhcCCcccCCCCCCcceeEEcCCCccCCCcCCCCCCcEEEE
Q psy8922         300 KHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWCVFNHIKQASDLRVGCDYSLFKSGIRPMWEDETNKNGGRWLI  379 (483)
Q Consensus       300 ~HpLq~~WTfWy~~~~~s~~ye~~Lk~I~tF~TVEeFW~~yn~I~~pS~L~~gsd~~LFK~GIkPmWEDp~N~nGGrwii  379 (483)
                      +|||+++|||||+.++.+.+|.+++++|++|+|||+||++|++|++|++|+.+++|||||+||+||||||+|+|||+|+|
T Consensus         1 kHpL~~~Wt~w~~~~~~~~~~~~~~~~i~~f~tvE~Fw~~~~~i~~~~~l~~~~~~~lFk~gI~P~WED~~N~~GG~~~~   80 (182)
T d1l8ba_           1 KHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLI   80 (182)
T ss_dssp             CCEEEEEEEEEEEECCSSSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCEEEEE
T ss_pred             CCCCCCeEEEEEEeCCCCchhhhcceEEEEEcCHHHHHHHHHcCCChHHCCccceEEEEecCccCCCCCcccCCCCEEEE
Confidence            59999999999999998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCcCchhHHHHHHHHHHHHccCcccCCCCCcceEEEEEcCCCcEEEEeccCCCCCChHHHHHHHHHHHHHhCCCCcc
Q psy8922         380 SLDRKQRSSELNAFWLEILLCLIGEAFDDYSEDICGAVVNVRAKGDKIGIWTVDASRSKSDGILSIGRKIKERLGIGAEY  459 (483)
Q Consensus       380 ri~k~~~~~~~d~iWe~LLLalIGE~f~e~~d~IcGiVvSvR~~~~rIsIW~kd~~~sne~~v~~I~~~LK~~L~L~~~~  459 (483)
                      ++++....+.++++|++||++||||+|.+..++||||++|+|+++++|+||++++  ++++.+..|++.++++|+++++.
T Consensus        81 ~i~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~--~~~~~~~~i~~~~~~~L~l~~~~  158 (182)
T d1l8ba_          81 TLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTEC--ENRDAVTHIGRVYKERLGLPPKI  158 (182)
T ss_dssp             EEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCT--TCHHHHHHHHHHHHHHHTCCTTS
T ss_pred             EECcccccchHHHHHHHHHHHHHhcccccCCCeeccEEEEecCCCcEEEEEeCCC--ccHHHHHHHHHHHHHHhCcCCCC
Confidence            9987655568999999999999999997667889999999999999999999998  78888999999999999999999


Q ss_pred             eEEEEecccccccCCCCCcceeEC
Q psy8922         460 QIVYQSHRDTASRTSSTSKNSFTL  483 (483)
Q Consensus       460 ~I~YksH~~s~~~~gs~~k~~y~~  483 (483)
                      .|+|++|++++++.|+.+|++|+|
T Consensus       159 ~~~yk~H~d~~~~~~~~~k~~~~~  182 (182)
T d1l8ba_         159 VIGYQSHADTATKSGSTTKNRFVV  182 (182)
T ss_dssp             CCEEEEHHHHHTC-----CCSEEC
T ss_pred             eEEEEechhhhhccCCccccceeC
Confidence            999999999999999999999997
>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein BLES03 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure